Query 001165
Match_columns 1134
No_of_seqs 564 out of 3958
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 17:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2006 WD40 repeat protein [G 100.0 1.7E-99 4E-104 894.8 31.4 827 228-1122 121-985 (1023)
2 PF07064 RIC1: RIC1; InterPro 100.0 1.2E-64 2.6E-69 547.2 22.6 247 690-947 4-257 (258)
3 KOG0276 Vesicle coat complex C 100.0 1.1E-36 2.4E-41 341.4 38.7 634 66-934 12-690 (794)
4 KOG0291 WD40-repeat-containing 100.0 7.8E-34 1.7E-38 325.0 43.0 401 22-493 99-552 (893)
5 KOG0271 Notchless-like WD40 re 100.0 4.1E-35 8.9E-40 312.9 26.3 345 38-489 85-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 1E-33 2.3E-38 302.2 26.1 324 20-428 114-479 (480)
7 KOG0291 WD40-repeat-containing 100.0 1.8E-29 3.9E-34 289.4 48.6 462 24-581 60-612 (893)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-31 5.2E-36 288.3 22.7 277 67-428 175-458 (459)
9 KOG0318 WD40 repeat stress pro 100.0 4.1E-28 9E-33 269.0 47.9 461 23-581 63-602 (603)
10 KOG0272 U4/U6 small nuclear ri 100.0 7.2E-31 1.6E-35 284.6 21.9 269 134-489 179-458 (459)
11 KOG0319 WD40-repeat-containing 100.0 6.1E-29 1.3E-33 285.4 35.9 422 23-490 66-618 (775)
12 KOG0318 WD40 repeat stress pro 100.0 1.7E-26 3.8E-31 256.2 49.5 479 25-620 24-582 (603)
13 KOG0286 G-protein beta subunit 100.0 3E-26 6.6E-31 238.5 30.3 284 125-489 48-343 (343)
14 KOG0263 Transcription initiati 99.9 6.1E-27 1.3E-31 272.5 22.1 243 206-492 376-650 (707)
15 KOG0279 G protein beta subunit 99.9 2E-25 4.3E-30 231.4 30.8 287 203-537 10-311 (315)
16 KOG0319 WD40-repeat-containing 99.9 6E-26 1.3E-30 261.0 28.8 318 24-428 287-617 (775)
17 KOG0263 Transcription initiati 99.9 1.1E-26 2.4E-31 270.2 22.6 247 203-480 446-703 (707)
18 KOG0286 G-protein beta subunit 99.9 3.4E-25 7.4E-30 230.7 29.4 285 203-537 50-343 (343)
19 KOG0292 Vesicle coat complex C 99.9 3.1E-23 6.7E-28 241.1 48.2 268 137-491 16-321 (1202)
20 KOG0273 Beta-transducin family 99.9 4.5E-25 9.8E-30 242.4 28.8 330 66-491 177-523 (524)
21 KOG0279 G protein beta subunit 99.9 1.5E-24 3.3E-29 224.8 29.6 277 255-581 14-313 (315)
22 KOG0645 WD40 repeat protein [G 99.9 8.4E-24 1.8E-28 218.5 31.0 277 256-581 14-311 (312)
23 KOG0284 Polyadenylation factor 99.9 1.8E-25 4E-30 241.6 16.9 272 134-490 100-379 (464)
24 KOG0306 WD40-repeat-containing 99.9 2.8E-22 6.1E-27 230.6 39.2 277 202-539 367-664 (888)
25 KOG0315 G-protein beta subunit 99.9 7.3E-23 1.6E-27 208.9 29.8 290 32-408 11-305 (311)
26 KOG0266 WD40 repeat-containing 99.9 2.4E-23 5.3E-28 249.0 31.2 275 135-491 164-454 (456)
27 KOG0645 WD40 repeat protein [G 99.9 8.3E-23 1.8E-27 211.2 30.4 281 203-538 9-310 (312)
28 KOG0284 Polyadenylation factor 99.9 1.3E-24 2.8E-29 235.1 17.6 276 207-539 95-380 (464)
29 KOG0273 Beta-transducin family 99.9 4.2E-23 9.1E-28 227.0 28.9 263 207-525 234-513 (524)
30 KOG1408 WD40 repeat protein [F 99.9 2.9E-22 6.4E-27 227.9 36.3 407 136-582 264-714 (1080)
31 KOG0266 WD40 repeat-containing 99.9 8.3E-23 1.8E-27 244.4 31.9 280 207-538 158-453 (456)
32 KOG0293 WD40 repeat-containing 99.9 3.3E-23 7.2E-28 223.9 22.3 277 25-392 230-514 (519)
33 KOG0296 Angio-associated migra 99.9 2.9E-22 6.4E-27 214.6 29.3 321 66-491 63-398 (399)
34 KOG0285 Pleiotropic regulator 99.9 6.1E-23 1.3E-27 218.4 23.9 279 203-539 146-439 (460)
35 KOG0315 G-protein beta subunit 99.9 3.1E-22 6.6E-27 204.4 28.0 257 23-362 44-303 (311)
36 PLN00181 protein SPA1-RELATED; 99.9 4.4E-22 9.6E-27 255.1 36.8 291 204-538 479-792 (793)
37 KOG0276 Vesicle coat complex C 99.9 1E-22 2.3E-27 229.6 26.8 353 134-579 15-378 (794)
38 cd00200 WD40 WD40 domain, foun 99.9 2.9E-21 6.3E-26 213.0 34.6 275 204-537 5-289 (289)
39 cd00200 WD40 WD40 domain, foun 99.9 2.3E-21 4.9E-26 213.9 33.5 267 137-489 16-289 (289)
40 KOG0306 WD40-repeat-containing 99.9 4.6E-22 1E-26 228.8 28.3 311 33-428 337-662 (888)
41 KOG0292 Vesicle coat complex C 99.9 5.7E-21 1.2E-25 222.4 36.8 241 205-493 6-282 (1202)
42 KOG0281 Beta-TrCP (transducin 99.9 1.8E-23 3.9E-28 221.2 14.7 277 133-493 198-479 (499)
43 PLN00181 protein SPA1-RELATED; 99.9 1.5E-21 3.3E-26 250.2 35.3 319 40-490 458-792 (793)
44 KOG0295 WD40 repeat-containing 99.9 1.9E-22 4.2E-27 215.8 21.4 267 204-522 104-394 (406)
45 KOG0285 Pleiotropic regulator 99.9 7.8E-22 1.7E-26 210.1 24.8 273 255-579 150-437 (460)
46 KOG0265 U5 snRNP-specific prot 99.9 1.8E-21 3.9E-26 203.9 26.6 272 203-522 42-326 (338)
47 KOG0281 Beta-TrCP (transducin 99.9 7.8E-23 1.7E-27 216.4 15.1 271 207-543 196-482 (499)
48 KOG0640 mRNA cleavage stimulat 99.9 5.3E-22 1.1E-26 207.6 21.0 245 203-490 167-425 (430)
49 KOG0293 WD40 repeat-containing 99.9 6.5E-22 1.4E-26 214.0 22.2 237 205-491 266-513 (519)
50 KOG0295 WD40 repeat-containing 99.9 1.2E-21 2.7E-26 209.7 23.5 242 204-490 146-405 (406)
51 KOG0296 Angio-associated migra 99.9 1.2E-20 2.7E-25 202.2 29.8 243 203-496 101-361 (399)
52 KOG0643 Translation initiation 99.9 7.8E-21 1.7E-25 196.0 23.7 299 20-492 9-318 (327)
53 KOG0265 U5 snRNP-specific prot 99.9 4.4E-20 9.6E-25 193.6 26.2 271 255-577 46-334 (338)
54 KOG1408 WD40 repeat protein [F 99.9 1.3E-19 2.7E-24 206.7 30.7 215 257-492 460-714 (1080)
55 KOG0275 Conserved WD40 repeat- 99.9 3.2E-21 6.9E-26 202.2 16.1 235 208-489 263-507 (508)
56 KOG0313 Microtubule binding pr 99.9 9.1E-20 2E-24 196.4 26.5 289 132-490 105-417 (423)
57 KOG0275 Conserved WD40 repeat- 99.9 2.8E-21 6.1E-26 202.7 14.2 276 203-525 208-498 (508)
58 KOG0316 Conserved WD40 repeat- 99.9 8.8E-20 1.9E-24 185.0 24.4 251 256-560 17-275 (307)
59 KOG0278 Serine/threonine kinas 99.9 4.8E-21 1.1E-25 195.4 15.1 239 203-493 54-299 (334)
60 KOG0310 Conserved WD40 repeat- 99.9 8.5E-20 1.8E-24 202.6 25.3 237 205-490 23-267 (487)
61 PTZ00421 coronin; Provisional 99.9 3.9E-19 8.5E-24 212.4 32.8 205 255-495 74-294 (493)
62 KOG1407 WD40 repeat protein [F 99.8 2.9E-19 6.3E-24 184.1 24.9 259 23-372 24-284 (313)
63 KOG0772 Uncharacterized conser 99.8 1.2E-19 2.6E-24 201.3 23.2 297 69-427 169-484 (641)
64 KOG0973 Histone transcription 99.8 3.9E-19 8.5E-24 214.2 27.9 247 205-493 66-357 (942)
65 KOG0641 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 173.2 28.7 272 25-372 38-331 (350)
66 KOG0305 Anaphase promoting com 99.8 4.1E-19 8.9E-24 205.0 25.8 233 208-492 217-462 (484)
67 KOG0313 Microtubule binding pr 99.8 2.8E-19 6.1E-24 192.6 22.6 279 206-539 103-418 (423)
68 PTZ00421 coronin; Provisional 99.8 1.7E-18 3.7E-23 206.9 31.7 206 204-433 71-293 (493)
69 KOG2106 Uncharacterized conser 99.8 2E-17 4.3E-22 183.5 37.2 408 1-490 181-625 (626)
70 KOG0288 WD40 repeat protein Ti 99.8 7.4E-20 1.6E-24 198.8 16.2 270 204-522 171-449 (459)
71 KOG2096 WD40 repeat protein [G 99.8 1.3E-18 2.8E-23 183.3 24.3 331 41-487 62-398 (420)
72 KOG0277 Peroxisomal targeting 99.8 6.5E-19 1.4E-23 180.8 21.5 236 208-490 60-308 (311)
73 KOG1407 WD40 repeat protein [F 99.8 2.5E-18 5.5E-23 177.2 25.9 265 203-522 15-288 (313)
74 KOG2048 WD40 repeat protein [G 99.8 3.5E-17 7.6E-22 187.9 37.6 281 69-428 27-317 (691)
75 KOG0305 Anaphase promoting com 99.8 2.2E-18 4.7E-23 199.0 28.1 265 31-432 188-463 (484)
76 KOG0282 mRNA splicing factor [ 99.8 1.5E-19 3.3E-24 200.2 17.3 280 202-536 208-502 (503)
77 KOG0973 Histone transcription 99.8 1.6E-18 3.5E-23 208.9 27.4 299 206-538 11-354 (942)
78 KOG1539 WD repeat protein [Gen 99.8 7.2E-17 1.6E-21 188.7 39.5 453 26-581 40-564 (910)
79 KOG2048 WD40 repeat protein [G 99.8 3.6E-16 7.9E-21 179.7 44.5 415 23-522 29-536 (691)
80 KOG0283 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 205.5 25.0 241 203-492 261-577 (712)
81 KOG0277 Peroxisomal targeting 99.8 1.3E-18 2.8E-23 178.6 21.3 273 212-537 12-307 (311)
82 KOG1539 WD repeat protein [Gen 99.8 6.4E-17 1.4E-21 189.1 36.0 404 31-491 173-648 (910)
83 KOG0274 Cdc4 and related F-box 99.8 3.6E-18 7.9E-23 204.3 26.3 269 134-494 210-485 (537)
84 KOG2096 WD40 repeat protein [G 99.8 1.3E-17 2.7E-22 175.9 26.2 300 203-537 81-400 (420)
85 KOG0316 Conserved WD40 repeat- 99.8 7E-18 1.5E-22 171.3 22.6 239 203-494 12-260 (307)
86 PTZ00420 coronin; Provisional 99.8 3.3E-17 7.3E-22 196.7 32.3 227 228-494 52-296 (568)
87 KOG0283 WD40 repeat-containing 99.8 3.3E-18 7.1E-23 201.8 22.9 199 203-431 364-577 (712)
88 KOG0310 Conserved WD40 repeat- 99.8 8.9E-18 1.9E-22 186.7 24.7 227 208-486 68-303 (487)
89 KOG0641 WD40 repeat protein [G 99.8 1E-16 2.3E-21 161.3 29.7 256 256-539 32-303 (350)
90 KOG0299 U3 snoRNP-associated p 99.8 1E-17 2.3E-22 184.7 24.6 283 204-522 138-443 (479)
91 KOG0274 Cdc4 and related F-box 99.8 1.7E-17 3.8E-22 198.5 28.2 266 257-581 209-482 (537)
92 KOG0308 Conserved WD40 repeat- 99.8 1.2E-18 2.6E-23 198.5 17.1 233 218-492 35-286 (735)
93 PTZ00420 coronin; Provisional 99.8 4E-17 8.7E-22 196.0 30.8 226 204-474 70-318 (568)
94 KOG1063 RNA polymerase II elon 99.8 2.4E-15 5.2E-20 173.0 41.3 315 31-391 25-391 (764)
95 KOG0300 WD40 repeat-containing 99.8 1.9E-17 4.1E-22 173.8 22.0 282 203-520 143-458 (481)
96 KOG1446 Histone H3 (Lys4) meth 99.8 3.2E-16 7E-21 166.6 31.5 277 67-429 14-302 (311)
97 KOG0282 mRNA splicing factor [ 99.8 2.3E-18 4.9E-23 190.9 15.6 277 128-489 210-503 (503)
98 KOG1446 Histone H3 (Lys4) meth 99.8 2E-16 4.3E-21 168.2 29.4 285 23-394 18-306 (311)
99 KOG0640 mRNA cleavage stimulat 99.8 1.1E-17 2.4E-22 175.4 18.9 218 203-442 107-346 (430)
100 KOG1274 WD40 repeat protein [G 99.8 7.3E-17 1.6E-21 190.8 27.9 268 65-517 11-281 (933)
101 KOG1063 RNA polymerase II elon 99.8 7.9E-16 1.7E-20 176.9 33.7 438 25-539 151-699 (764)
102 KOG0772 Uncharacterized conser 99.8 6.1E-17 1.3E-21 180.0 23.2 296 127-490 162-487 (641)
103 KOG0294 WD40 repeat-containing 99.8 1.5E-16 3.3E-21 168.1 24.9 236 204-493 39-283 (362)
104 KOG2106 Uncharacterized conser 99.8 2E-15 4.4E-20 167.7 34.7 275 208-538 200-520 (626)
105 KOG0288 WD40 repeat protein Ti 99.8 1.2E-17 2.6E-22 181.8 16.3 265 137-488 182-458 (459)
106 KOG0289 mRNA splicing factor [ 99.7 1.3E-16 2.8E-21 174.6 23.3 221 256-522 219-450 (506)
107 KOG0289 mRNA splicing factor [ 99.7 3.1E-16 6.7E-21 171.6 25.5 279 208-538 219-505 (506)
108 KOG0643 Translation initiation 99.7 4.4E-16 9.6E-21 161.1 25.1 276 256-581 10-317 (327)
109 KOG0308 Conserved WD40 repeat- 99.7 1.9E-16 4.1E-21 180.7 22.5 340 77-493 35-395 (735)
110 KOG0294 WD40 repeat-containing 99.7 2.9E-16 6.4E-21 166.0 22.2 240 255-586 42-286 (362)
111 KOG0647 mRNA export protein (c 99.7 1E-15 2.2E-20 161.1 24.3 271 206-520 25-309 (347)
112 KOG1332 Vesicle coat complex C 99.7 2.4E-16 5.1E-21 161.3 18.7 258 205-500 8-296 (299)
113 KOG0301 Phospholipase A2-activ 99.7 6.2E-16 1.3E-20 177.9 24.3 230 204-495 53-292 (745)
114 KOG1274 WD40 repeat protein [G 99.7 1.4E-15 3E-20 180.1 26.7 262 23-372 17-282 (933)
115 KOG2055 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 167.5 24.3 229 67-380 213-451 (514)
116 KOG0647 mRNA export protein (c 99.7 1E-15 2.2E-20 161.1 21.8 268 23-380 31-309 (347)
117 KOG0299 U3 snoRNP-associated p 99.7 8.7E-16 1.9E-20 169.7 22.1 276 255-568 141-442 (479)
118 KOG0264 Nucleosome remodeling 99.7 4E-16 8.6E-21 172.7 19.4 269 204-494 120-407 (422)
119 KOG0301 Phospholipase A2-activ 99.7 8.3E-16 1.8E-20 176.9 22.3 266 203-539 9-288 (745)
120 KOG0268 Sof1-like rRNA process 99.7 2.3E-16 5E-21 169.2 15.5 247 256-538 66-344 (433)
121 KOG0268 Sof1-like rRNA process 99.7 2E-16 4.4E-21 169.7 14.6 275 68-492 67-346 (433)
122 KOG0278 Serine/threonine kinas 99.7 8E-16 1.7E-20 157.6 17.9 277 67-433 14-300 (334)
123 KOG0639 Transducin-like enhanc 99.7 1.4E-15 3.1E-20 168.4 20.9 235 205-490 462-703 (705)
124 KOG0300 WD40 repeat-containing 99.7 1.3E-15 2.8E-20 160.2 19.0 217 222-494 126-389 (481)
125 KOG4283 Transcription-coupled 99.7 4.5E-15 9.8E-20 155.2 22.9 228 256-495 43-280 (397)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5E-14 1.1E-18 158.9 33.5 274 32-400 2-288 (300)
127 KOG0267 Microtubule severing p 99.7 5.8E-17 1.3E-21 186.8 9.4 230 206-485 26-261 (825)
128 KOG1273 WD40 repeat protein [G 99.7 3.6E-15 7.8E-20 157.4 21.3 236 257-539 24-280 (405)
129 KOG0646 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 167.5 20.2 229 231-494 62-310 (476)
130 KOG1036 Mitotic spindle checkp 99.7 1.4E-14 3.1E-19 153.4 25.6 243 207-494 12-265 (323)
131 KOG2919 Guanine nucleotide-bin 99.7 5.8E-15 1.3E-19 156.4 22.6 228 217-482 120-360 (406)
132 KOG0646 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 167.6 19.5 245 18-371 80-330 (476)
133 KOG2055 WD40 repeat protein [G 99.7 6.7E-15 1.4E-19 162.6 22.7 283 23-391 217-512 (514)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 7.2E-14 1.6E-18 157.5 31.0 230 211-494 33-282 (300)
135 KOG0639 Transducin-like enhanc 99.7 2.6E-15 5.7E-20 166.3 18.3 269 25-383 425-693 (705)
136 KOG0269 WD40 repeat-containing 99.6 5.3E-15 1.2E-19 172.1 19.5 278 69-424 41-334 (839)
137 KOG2445 Nuclear pore complex c 99.6 4.4E-14 9.5E-19 149.2 24.3 281 67-433 13-321 (361)
138 KOG0264 Nucleosome remodeling 99.6 7.5E-15 1.6E-19 162.7 19.4 251 255-539 123-404 (422)
139 KOG2445 Nuclear pore complex c 99.6 1.2E-13 2.6E-18 146.0 25.5 271 205-491 10-318 (361)
140 KOG1332 Vesicle coat complex C 99.6 1.7E-14 3.7E-19 147.8 18.6 249 259-584 14-289 (299)
141 KOG1036 Mitotic spindle checkp 99.6 1E-13 2.2E-18 147.0 24.5 277 18-383 10-293 (323)
142 KOG0267 Microtubule severing p 99.6 1.4E-15 3E-20 175.5 9.6 218 257-521 29-253 (825)
143 KOG4283 Transcription-coupled 99.6 9.3E-14 2E-18 145.5 21.8 287 133-490 44-364 (397)
144 KOG0269 WD40 repeat-containing 99.6 1.8E-14 3.9E-19 167.8 18.3 242 257-539 40-296 (839)
145 KOG1538 Uncharacterized conser 99.6 6E-13 1.3E-17 151.7 30.0 254 22-348 15-294 (1081)
146 KOG1273 WD40 repeat protein [G 99.6 5E-13 1.1E-17 141.4 24.9 289 6-372 12-305 (405)
147 KOG4378 Nuclear protein COP1 [ 99.6 1.8E-13 3.8E-18 151.9 20.5 255 211-516 37-303 (673)
148 KOG0302 Ribosome Assembly prot 99.6 9.1E-14 2E-18 150.3 17.3 227 64-348 148-379 (440)
149 KOG1034 Transcriptional repres 99.6 5.2E-13 1.1E-17 142.3 22.5 239 207-491 88-383 (385)
150 KOG4328 WD40 protein [Function 99.5 3.2E-13 6.9E-18 149.4 19.6 278 256-578 186-492 (498)
151 KOG1524 WD40 repeat-containing 99.5 1.4E-12 3E-17 146.1 23.6 165 142-372 75-239 (737)
152 COG2319 FOG: WD40 repeat [Gene 99.5 1.8E-10 3.8E-15 133.8 42.3 357 25-492 71-443 (466)
153 KOG0303 Actin-binding protein 99.5 5.7E-13 1.2E-17 144.8 18.3 170 315-544 79-254 (472)
154 KOG0307 Vesicle coat complex C 99.5 1.2E-13 2.7E-18 167.8 14.3 253 207-497 63-333 (1049)
155 KOG4378 Nuclear protein COP1 [ 99.5 2.1E-12 4.5E-17 143.6 21.7 292 33-417 5-309 (673)
156 KOG0650 WD40 repeat nucleolar 99.5 1.3E-12 2.7E-17 148.5 20.2 323 66-488 399-732 (733)
157 KOG4328 WD40 protein [Function 99.5 3.9E-12 8.4E-17 141.0 23.2 282 67-428 186-493 (498)
158 KOG0307 Vesicle coat complex C 99.5 3E-13 6.5E-18 164.5 15.4 201 204-431 112-328 (1049)
159 KOG1538 Uncharacterized conser 99.5 1.4E-12 3E-17 148.7 19.4 263 257-581 13-293 (1081)
160 COG2319 FOG: WD40 repeat [Gene 99.5 2.4E-10 5.2E-15 132.6 37.8 283 204-539 61-359 (466)
161 KOG1445 Tumor-specific antigen 99.5 5.6E-13 1.2E-17 151.2 14.6 205 264-546 587-805 (1012)
162 KOG0302 Ribosome Assembly prot 99.5 1.1E-12 2.3E-17 142.1 16.1 198 269-493 166-380 (440)
163 KOG1034 Transcriptional repres 99.4 3.5E-12 7.5E-17 136.1 18.6 252 203-493 33-339 (385)
164 KOG1009 Chromatin assembly com 99.4 8.8E-12 1.9E-16 136.5 20.6 166 207-382 12-183 (434)
165 KOG0270 WD40 repeat-containing 99.4 2.6E-12 5.7E-17 142.0 16.6 200 267-493 191-406 (463)
166 KOG2919 Guanine nucleotide-bin 99.4 2.8E-11 6E-16 128.9 23.2 272 209-522 50-356 (406)
167 KOG1963 WD40 repeat protein [G 99.4 2.4E-10 5.2E-15 136.3 32.8 360 23-493 164-540 (792)
168 KOG0270 WD40 repeat-containing 99.4 5.6E-12 1.2E-16 139.4 17.5 230 219-493 191-451 (463)
169 PRK01742 tolB translocation pr 99.4 1.5E-11 3.3E-16 146.9 22.1 236 40-371 184-426 (429)
170 PRK11028 6-phosphogluconolacto 99.4 4E-10 8.7E-15 130.1 32.5 249 209-499 35-314 (330)
171 KOG0321 WD40 repeat-containing 99.4 2.7E-11 5.8E-16 139.0 21.9 277 214-539 55-391 (720)
172 KOG2111 Uncharacterized conser 99.4 6E-11 1.3E-15 126.6 23.1 237 25-349 11-258 (346)
173 KOG0771 Prolactin regulatory e 99.4 7.6E-12 1.6E-16 138.2 16.9 75 256-348 281-355 (398)
174 KOG0321 WD40 repeat-containing 99.4 3.6E-11 7.8E-16 138.0 21.1 260 203-493 95-393 (720)
175 KOG4497 Uncharacterized conser 99.4 1.8E-10 3.9E-15 122.8 24.7 366 23-522 12-420 (447)
176 PF04053 Coatomer_WDAD: Coatom 99.4 2.2E-11 4.7E-16 143.3 19.3 336 464-937 34-374 (443)
177 KOG0642 Cell-cycle nuclear pro 99.4 7.4E-12 1.6E-16 142.2 14.5 257 203-493 289-563 (577)
178 PRK11028 6-phosphogluconolacto 99.3 1.1E-09 2.4E-14 126.4 32.6 279 35-390 7-303 (330)
179 KOG0303 Actin-binding protein 99.3 1.1E-10 2.5E-15 127.2 22.0 202 204-431 77-295 (472)
180 PF04762 IKI3: IKI3 family; I 99.3 3.3E-06 7.1E-11 108.7 65.1 395 67-539 75-519 (928)
181 KOG1007 WD repeat protein TSSC 99.3 3E-10 6.5E-15 119.4 23.1 269 203-489 58-358 (370)
182 KOG0644 Uncharacterized conser 99.3 2.8E-12 6.1E-17 150.1 8.7 237 203-490 185-467 (1113)
183 KOG0649 WD40 repeat protein [G 99.3 3.7E-10 7.9E-15 116.2 22.6 239 136-429 16-273 (325)
184 KOG0650 WD40 repeat nucleolar 99.3 1.3E-10 2.7E-15 132.5 20.8 251 203-489 395-678 (733)
185 KOG0771 Prolactin regulatory e 99.3 2.3E-11 4.9E-16 134.5 14.4 192 260-491 148-354 (398)
186 KOG1963 WD40 repeat protein [G 99.3 2.5E-08 5.3E-13 119.5 39.9 295 259-586 163-492 (792)
187 KOG1188 WD40 repeat protein [G 99.3 1.6E-10 3.5E-15 124.3 19.4 272 143-491 41-346 (376)
188 KOG0322 G-protein beta subunit 99.3 7.3E-11 1.6E-15 122.7 15.5 265 22-346 17-322 (323)
189 KOG1009 Chromatin assembly com 99.3 6.3E-11 1.4E-15 129.9 15.8 161 253-428 10-193 (434)
190 KOG1240 Protein kinase contain 99.3 1.2E-09 2.5E-14 133.6 28.0 226 66-356 1047-1282(1431)
191 KOG1188 WD40 repeat protein [G 99.3 6.8E-11 1.5E-15 127.1 15.6 186 269-494 41-245 (376)
192 PRK01742 tolB translocation pr 99.3 3.6E-10 7.9E-15 135.1 23.8 216 206-473 201-426 (429)
193 KOG2394 WD40 protein DMR-N9 [G 99.3 9.6E-11 2.1E-15 132.1 17.1 146 207-372 218-386 (636)
194 KOG1587 Cytoplasmic dynein int 99.3 3.7E-10 8.1E-15 134.8 22.2 270 18-348 241-517 (555)
195 KOG1517 Guanine nucleotide bin 99.2 6.4E-10 1.4E-14 133.7 23.8 294 22-391 1067-1381(1387)
196 KOG1524 WD40 repeat-containing 99.2 2E-10 4.4E-15 129.1 17.1 202 36-343 81-282 (737)
197 KOG1587 Cytoplasmic dynein int 99.2 6E-10 1.3E-14 133.1 22.1 258 206-493 240-518 (555)
198 PRK03629 tolB translocation pr 99.2 1.3E-09 2.8E-14 130.1 24.7 236 40-370 179-427 (429)
199 KOG0649 WD40 repeat protein [G 99.2 5.5E-09 1.2E-13 107.7 24.3 261 67-398 10-280 (325)
200 KOG1007 WD repeat protein TSSC 99.2 5.8E-10 1.3E-14 117.3 16.8 161 207-391 122-289 (370)
201 KOG0322 G-protein beta subunit 99.2 7.8E-10 1.7E-14 115.2 16.3 255 204-490 10-322 (323)
202 PF08662 eIF2A: Eukaryotic tra 99.2 1.9E-09 4.1E-14 114.2 19.3 115 207-351 58-183 (194)
203 KOG4227 WD40 repeat protein [G 99.1 3.8E-09 8.3E-14 114.7 21.2 265 208-497 105-393 (609)
204 KOG1445 Tumor-specific antigen 99.1 3.9E-10 8.4E-15 128.6 14.0 122 206-349 625-752 (1012)
205 KOG1517 Guanine nucleotide bin 99.1 5.3E-09 1.1E-13 126.0 23.6 303 71-493 1068-1383(1387)
206 PF08662 eIF2A: Eukaryotic tra 99.1 4.5E-09 9.7E-14 111.3 20.4 149 212-393 9-181 (194)
207 KOG1310 WD40 repeat protein [G 99.1 6.8E-10 1.5E-14 125.2 14.2 233 315-581 48-303 (758)
208 KOG4227 WD40 repeat protein [G 99.1 4.1E-09 9E-14 114.4 18.3 250 255-538 55-321 (609)
209 KOG0642 Cell-cycle nuclear pro 99.1 1.7E-09 3.7E-14 123.3 15.9 228 67-354 294-568 (577)
210 KOG1523 Actin-related protein 99.1 7.7E-09 1.7E-13 110.7 19.7 237 256-522 10-266 (361)
211 KOG2394 WD40 protein DMR-N9 [G 99.0 5.1E-09 1.1E-13 118.5 17.6 118 207-349 289-454 (636)
212 KOG2139 WD40 repeat protein [G 99.0 5.9E-09 1.3E-13 112.9 17.2 191 257-491 99-309 (445)
213 KOG2139 WD40 repeat protein [G 99.0 3.4E-08 7.5E-13 107.2 22.4 219 207-485 139-368 (445)
214 PRK03629 tolB translocation pr 99.0 5.5E-08 1.2E-12 116.2 26.8 213 207-472 197-427 (429)
215 KOG1523 Actin-related protein 99.0 1.9E-08 4.2E-13 107.8 19.8 248 208-499 10-287 (361)
216 PRK04922 tolB translocation pr 99.0 2.2E-08 4.8E-13 120.0 23.0 235 41-370 185-432 (433)
217 PRK02889 tolB translocation pr 99.0 2.3E-08 5E-13 119.5 23.1 218 68-370 196-424 (427)
218 PRK05137 tolB translocation pr 99.0 1.5E-07 3.3E-12 112.8 28.2 192 257-497 202-418 (435)
219 KOG1240 Protein kinase contain 99.0 7.1E-08 1.5E-12 118.5 24.7 275 203-493 1043-1336(1431)
220 KOG0644 Uncharacterized conser 99.0 5.9E-10 1.3E-14 131.0 6.7 212 255-493 189-428 (1113)
221 KOG2321 WD40 repeat protein [G 99.0 9.4E-08 2E-12 109.1 23.6 168 213-401 138-312 (703)
222 KOG0290 Conserved WD40 repeat- 99.0 1.7E-07 3.7E-12 99.2 23.8 243 205-484 93-358 (364)
223 KOG2321 WD40 repeat protein [G 99.0 6.1E-08 1.3E-12 110.6 21.6 261 22-372 54-325 (703)
224 KOG2110 Uncharacterized conser 98.9 6.6E-07 1.4E-11 98.0 28.4 249 207-492 45-331 (391)
225 KOG0290 Conserved WD40 repeat- 98.9 4.9E-08 1.1E-12 103.2 18.4 204 255-493 95-320 (364)
226 PRK02889 tolB translocation pr 98.9 8.9E-08 1.9E-12 114.5 23.5 183 207-421 194-391 (427)
227 PRK05137 tolB translocation pr 98.9 3.5E-07 7.5E-12 109.8 27.0 181 205-418 198-394 (435)
228 KOG2315 Predicted translation 98.9 2.3E-06 4.9E-11 98.4 31.4 309 22-429 37-389 (566)
229 KOG2110 Uncharacterized conser 98.9 5.2E-07 1.1E-11 98.8 24.8 232 208-493 5-250 (391)
230 KOG4497 Uncharacterized conser 98.9 3.6E-07 7.7E-12 98.1 22.4 272 214-522 14-379 (447)
231 COG2706 3-carboxymuconate cycl 98.9 6.5E-06 1.4E-10 90.7 32.7 267 206-539 37-321 (346)
232 KOG2111 Uncharacterized conser 98.9 1.4E-06 3.1E-11 93.8 26.5 179 40-289 75-259 (346)
233 KOG1272 WD40-repeat-containing 98.9 5.7E-09 1.2E-13 116.3 8.7 225 257-538 130-361 (545)
234 PRK04922 tolB translocation pr 98.8 4E-07 8.6E-12 109.2 25.3 181 206-419 201-397 (433)
235 PF10282 Lactonase: Lactonase, 98.8 6.4E-06 1.4E-10 95.7 34.5 272 23-353 40-330 (345)
236 KOG4547 WD40 repeat-containing 98.8 4.4E-07 9.6E-12 104.9 23.6 170 217-411 2-192 (541)
237 PF02239 Cytochrom_D1: Cytochr 98.8 8.8E-07 1.9E-11 103.2 25.8 293 25-399 42-355 (369)
238 KOG1310 WD40 repeat protein [G 98.8 5.8E-08 1.2E-12 110.0 15.0 132 203-348 45-179 (758)
239 KOG1334 WD40 repeat protein [G 98.8 5.5E-08 1.2E-12 109.3 14.2 306 21-395 144-470 (559)
240 KOG1272 WD40-repeat-containing 98.8 1.1E-08 2.4E-13 114.1 8.4 225 208-489 129-360 (545)
241 KOG1334 WD40 repeat protein [G 98.8 4E-08 8.8E-13 110.3 12.8 286 128-430 138-466 (559)
242 PF10282 Lactonase: Lactonase, 98.8 4.4E-05 9.5E-10 88.7 38.9 166 136-347 42-222 (345)
243 TIGR02800 propeller_TolB tol-p 98.8 6.7E-07 1.4E-11 106.7 24.2 188 69-341 191-388 (417)
244 PRK04792 tolB translocation pr 98.8 9.2E-07 2E-11 106.3 25.1 237 41-370 199-446 (448)
245 PF02239 Cytochrom_D1: Cytochr 98.7 6.3E-05 1.4E-09 87.8 38.1 283 212-541 40-349 (369)
246 KOG4547 WD40 repeat-containing 98.7 2.5E-07 5.3E-12 106.9 17.6 212 76-348 2-221 (541)
247 PF15492 Nbas_N: Neuroblastoma 98.7 2.8E-06 6E-11 91.1 24.0 72 25-99 3-75 (282)
248 PRK00178 tolB translocation pr 98.7 2.3E-06 4.9E-11 102.7 25.0 216 68-370 199-427 (430)
249 TIGR02800 propeller_TolB tol-p 98.7 2.3E-06 5E-11 102.1 24.9 180 257-484 190-386 (417)
250 KOG1912 WD40 repeat protein [G 98.7 1.2E-05 2.5E-10 95.2 29.2 468 6-581 4-551 (1062)
251 PF04762 IKI3: IKI3 family; I 98.7 4.7E-06 1E-10 107.2 28.9 227 206-497 73-339 (928)
252 PRK01029 tolB translocation pr 98.7 2.8E-06 6E-11 101.4 24.9 133 212-371 284-425 (428)
253 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.7E-05 3.7E-10 90.7 29.4 121 215-357 200-340 (352)
254 KOG1354 Serine/threonine prote 98.7 1.5E-06 3.2E-11 94.2 18.9 299 68-390 26-358 (433)
255 KOG2041 WD40 repeat protein [G 98.6 4.3E-05 9.4E-10 89.4 31.8 359 66-490 13-407 (1189)
256 KOG1354 Serine/threonine prote 98.6 2.4E-06 5.1E-11 92.6 18.2 288 24-349 30-361 (433)
257 KOG0974 WD-repeat protein WDR6 98.6 6.6E-07 1.4E-11 109.2 15.1 188 216-432 95-290 (967)
258 COG5354 Uncharacterized protei 98.6 3.1E-05 6.6E-10 88.3 26.7 133 316-484 273-421 (561)
259 KOG2006 WD40 repeat protein [G 98.5 9.2E-08 2E-12 116.7 6.8 86 984-1069 903-991 (1023)
260 PRK04792 tolB translocation pr 98.5 1.8E-05 3.9E-10 95.2 26.4 189 257-491 218-425 (448)
261 PRK00178 tolB translocation pr 98.5 9.4E-06 2E-10 97.4 23.7 180 206-418 196-391 (430)
262 KOG0974 WD-repeat protein WDR6 98.5 1.5E-06 3.3E-11 106.2 16.5 148 214-392 139-289 (967)
263 PRK01029 tolB translocation pr 98.5 2.3E-05 5E-10 93.5 25.2 180 209-416 185-386 (428)
264 KOG2315 Predicted translation 98.5 1.1E-05 2.3E-10 93.0 20.4 117 206-352 268-395 (566)
265 KOG3881 Uncharacterized conser 98.4 1.2E-05 2.6E-10 88.9 18.3 208 133-397 106-326 (412)
266 COG2706 3-carboxymuconate cycl 98.4 0.0005 1.1E-08 76.2 30.5 283 33-352 6-328 (346)
267 KOG4532 WD40-like repeat conta 98.4 3.9E-05 8.4E-10 80.9 20.7 209 71-352 71-287 (344)
268 KOG1409 Uncharacterized conser 98.4 5E-05 1.1E-09 82.7 21.6 242 68-394 25-273 (404)
269 COG4946 Uncharacterized protei 98.3 0.0001 2.2E-09 83.0 23.3 139 206-372 357-500 (668)
270 PF00400 WD40: WD domain, G-be 98.3 1.5E-06 3.3E-11 66.1 6.4 39 303-345 1-39 (39)
271 KOG0309 Conserved WD40 repeat- 98.3 1.5E-06 3.2E-11 101.8 9.0 203 204-430 110-339 (1081)
272 KOG3881 Uncharacterized conser 98.3 2.2E-05 4.7E-10 86.9 17.5 136 210-371 204-342 (412)
273 COG4946 Uncharacterized protei 98.2 0.0017 3.6E-08 73.6 29.0 198 260-495 270-481 (668)
274 PRK04043 tolB translocation pr 98.2 0.00015 3.2E-09 86.2 22.3 107 213-349 281-402 (419)
275 KOG1064 RAVE (regulator of V-A 98.2 6.9E-06 1.5E-10 104.6 10.5 181 256-492 2208-2399(2439)
276 KOG1409 Uncharacterized conser 98.1 0.0003 6.4E-09 76.9 20.7 243 205-494 21-273 (404)
277 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0055 1.2E-07 70.4 32.3 280 40-399 27-338 (352)
278 KOG1064 RAVE (regulator of V-A 98.1 7.8E-06 1.7E-10 104.2 9.8 189 135-400 2211-2407(2439)
279 KOG2041 WD40 repeat protein [G 98.1 0.00016 3.5E-09 84.8 19.5 149 204-372 10-168 (1189)
280 KOG3914 WD repeat protein WDR4 98.1 2.4E-05 5.3E-10 87.0 12.0 163 209-399 63-231 (390)
281 PLN02919 haloacid dehalogenase 98.1 0.0012 2.5E-08 87.1 29.3 177 212-395 686-892 (1057)
282 PF15492 Nbas_N: Neuroblastoma 98.1 0.0016 3.5E-08 70.3 24.8 236 214-497 3-269 (282)
283 PLN02919 haloacid dehalogenase 98.0 0.0015 3.2E-08 86.2 29.0 265 212-494 571-891 (1057)
284 KOG0309 Conserved WD40 repeat- 98.0 5.6E-05 1.2E-09 89.0 12.6 219 208-475 24-258 (1081)
285 KOG3914 WD repeat protein WDR4 98.0 6.4E-05 1.4E-09 83.8 12.2 83 255-356 150-232 (390)
286 KOG0280 Uncharacterized conser 97.9 0.00062 1.3E-08 73.1 18.4 117 211-348 124-242 (339)
287 KOG0280 Uncharacterized conser 97.9 0.00053 1.1E-08 73.6 17.4 208 70-349 72-286 (339)
288 PRK04043 tolB translocation pr 97.9 0.0034 7.5E-08 74.7 26.4 135 258-419 189-337 (419)
289 PF06433 Me-amine-dh_H: Methyl 97.8 0.0037 8.1E-08 70.2 23.8 258 25-359 41-332 (342)
290 COG5354 Uncharacterized protei 97.8 0.0067 1.4E-07 69.8 26.0 192 257-493 174-397 (561)
291 TIGR03300 assembly_YfgL outer 97.8 0.012 2.7E-07 69.2 29.2 287 220-579 65-377 (377)
292 TIGR03300 assembly_YfgL outer 97.8 0.0071 1.5E-07 71.2 27.0 143 269-434 191-342 (377)
293 KOG4532 WD40-like repeat conta 97.8 0.0018 4E-08 68.7 18.6 203 223-499 131-339 (344)
294 KOG1920 IkappaB kinase complex 97.8 0.0052 1.1E-07 77.3 25.3 70 208-284 68-137 (1265)
295 KOG2314 Translation initiation 97.8 0.0046 9.9E-08 71.6 22.9 70 22-100 213-293 (698)
296 KOG2114 Vacuolar assembly/sort 97.7 0.0038 8.3E-08 75.8 22.6 223 134-413 27-266 (933)
297 KOG1912 WD40 repeat protein [G 97.7 0.0033 7.2E-08 75.2 21.6 117 259-397 18-149 (1062)
298 KOG2314 Translation initiation 97.7 0.016 3.4E-07 67.3 25.4 275 212-539 214-525 (698)
299 KOG4714 Nucleoporin [Nuclear s 97.6 0.0011 2.4E-08 70.0 14.7 153 316-493 88-256 (319)
300 PF04841 Vps16_N: Vps16, N-ter 97.6 0.077 1.7E-06 63.1 31.8 258 4-349 20-289 (410)
301 PF00400 WD40: WD domain, G-be 97.6 0.00012 2.7E-09 55.5 5.4 35 455-489 4-39 (39)
302 PF08450 SGL: SMP-30/Gluconola 97.6 0.031 6.8E-07 61.5 26.5 141 207-369 84-233 (246)
303 KOG1920 IkappaB kinase complex 97.6 0.014 3E-07 73.7 25.0 232 68-349 69-324 (1265)
304 KOG4190 Uncharacterized conser 97.5 0.00014 3.1E-09 82.7 6.4 160 315-494 733-909 (1034)
305 PF11768 DUF3312: Protein of u 97.5 0.00061 1.3E-08 80.1 11.3 73 256-349 259-331 (545)
306 KOG3621 WD40 repeat-containing 97.4 0.0047 1E-07 73.8 18.0 122 209-348 34-155 (726)
307 KOG3617 WD40 and TPR repeat-co 97.4 0.0035 7.6E-08 75.3 15.9 72 257-347 60-131 (1416)
308 PF07433 DUF1513: Protein of u 97.3 0.037 8E-07 61.7 22.1 94 259-372 7-110 (305)
309 PF07433 DUF1513: Protein of u 97.3 0.023 4.9E-07 63.4 20.1 249 21-337 6-276 (305)
310 COG5170 CDC55 Serine/threonine 97.3 0.0026 5.6E-08 68.6 11.8 270 66-358 25-321 (460)
311 KOG4714 Nucleoporin [Nuclear s 97.2 0.003 6.5E-08 66.9 11.8 76 257-350 180-257 (319)
312 PF04841 Vps16_N: Vps16, N-ter 97.2 0.22 4.7E-06 59.3 29.3 71 461-538 215-286 (410)
313 KOG4640 Anaphase-promoting com 97.2 0.0012 2.6E-08 77.8 9.6 77 257-353 21-98 (665)
314 KOG2695 WD40 repeat protein [G 97.2 0.0013 2.7E-08 72.1 9.0 126 256-400 252-385 (425)
315 COG5170 CDC55 Serine/threonine 97.2 0.0058 1.3E-07 66.0 13.4 228 257-497 27-315 (460)
316 KOG2695 WD40 repeat protein [G 97.0 0.001 2.2E-08 72.9 6.3 133 207-357 251-386 (425)
317 KOG2114 Vacuolar assembly/sort 97.0 0.05 1.1E-06 66.6 20.8 129 207-356 124-252 (933)
318 KOG2066 Vacuolar assembly/sort 97.0 0.015 3.3E-07 70.4 16.0 186 257-538 40-232 (846)
319 KOG4190 Uncharacterized conser 97.0 0.0043 9.3E-08 71.2 10.7 182 128-357 731-916 (1034)
320 PF08450 SGL: SMP-30/Gluconola 97.0 0.58 1.3E-05 51.4 27.7 131 213-372 4-145 (246)
321 KOG4640 Anaphase-promoting com 96.9 0.003 6.4E-08 74.5 8.9 71 209-286 21-92 (665)
322 KOG2066 Vacuolar assembly/sort 96.9 0.018 3.9E-07 69.8 15.5 151 135-357 42-197 (846)
323 KOG1275 PAB-dependent poly(A) 96.9 0.013 2.8E-07 71.6 14.3 177 268-489 147-340 (1118)
324 KOG1832 HIV-1 Vpr-binding prot 96.9 0.00061 1.3E-08 81.9 3.2 182 256-492 1101-1292(1516)
325 smart00320 WD40 WD40 repeats. 96.8 0.0031 6.7E-08 45.7 5.8 30 316-345 11-40 (40)
326 PRK11138 outer membrane biogen 96.8 0.62 1.4E-05 55.2 28.3 248 268-579 120-392 (394)
327 PF00930 DPPIV_N: Dipeptidyl p 96.7 0.34 7.4E-06 56.5 24.3 75 22-98 45-132 (353)
328 PRK02888 nitrous-oxide reducta 96.5 0.16 3.4E-06 61.8 19.9 88 338-431 295-405 (635)
329 PF04053 Coatomer_WDAD: Coatom 96.5 1 2.2E-05 53.8 26.4 108 771-933 298-412 (443)
330 KOG1645 RING-finger-containing 96.4 0.13 2.9E-06 58.0 17.0 72 257-348 194-267 (463)
331 PF11768 DUF3312: Protein of u 96.3 0.055 1.2E-06 64.2 14.1 75 205-287 256-330 (545)
332 PF00930 DPPIV_N: Dipeptidyl p 96.2 0.72 1.6E-05 53.8 23.2 79 208-287 42-132 (353)
333 KOG0882 Cyclophilin-related pe 96.2 0.049 1.1E-06 62.0 12.5 97 255-356 143-240 (558)
334 PF13360 PQQ_2: PQQ-like domai 96.0 0.97 2.1E-05 49.0 21.8 179 267-494 35-233 (238)
335 PF13360 PQQ_2: PQQ-like domai 96.0 2.1 4.6E-05 46.3 24.4 212 276-538 1-229 (238)
336 KOG1832 HIV-1 Vpr-binding prot 95.9 0.0089 1.9E-07 72.4 5.0 150 316-493 1100-1257(1516)
337 KOG0882 Cyclophilin-related pe 95.8 0.045 9.8E-07 62.3 10.0 205 266-495 18-235 (558)
338 PRK11138 outer membrane biogen 95.7 1.8 3.8E-05 51.4 23.6 214 328-580 119-352 (394)
339 PF06433 Me-amine-dh_H: Methyl 95.6 5 0.00011 45.7 24.8 165 221-400 148-329 (342)
340 KOG3621 WD40 repeat-containing 95.5 0.064 1.4E-06 64.5 10.3 117 135-286 38-154 (726)
341 KOG2079 Vacuolar assembly/sort 95.4 0.19 4.1E-06 63.2 14.1 102 219-346 98-202 (1206)
342 PF06977 SdiA-regulated: SdiA- 95.4 1.7 3.6E-05 47.9 20.1 129 204-348 17-148 (248)
343 COG0823 TolB Periplasmic compo 95.4 0.22 4.8E-06 59.2 14.3 110 26-163 199-317 (425)
344 PF08596 Lgl_C: Lethal giant l 95.4 2.4 5.3E-05 50.0 22.8 238 69-356 3-299 (395)
345 COG0823 TolB Periplasmic compo 95.0 0.31 6.7E-06 58.0 14.2 101 213-338 286-390 (425)
346 PRK02888 nitrous-oxide reducta 95.0 0.47 1E-05 57.9 15.6 76 211-287 323-405 (635)
347 KOG1008 Uncharacterized conser 95.0 0.014 3.1E-07 68.9 2.7 192 256-491 56-275 (783)
348 KOG2079 Vacuolar assembly/sort 94.8 0.083 1.8E-06 66.2 8.6 80 261-358 92-171 (1206)
349 smart00320 WD40 WD40 repeats. 94.6 0.058 1.3E-06 38.6 4.4 34 456-489 6-40 (40)
350 PF14783 BBS2_Mid: Ciliary BBS 94.3 1.3 2.9E-05 41.9 13.4 95 217-343 11-110 (111)
351 KOG4441 Proteins containing BT 94.3 1.5 3.2E-05 54.5 18.1 68 471-539 473-546 (571)
352 PF08596 Lgl_C: Lethal giant l 94.1 0.97 2.1E-05 53.3 15.2 121 210-346 3-172 (395)
353 PF12894 Apc4_WD40: Anaphase-p 94.0 0.12 2.7E-06 41.0 5.1 30 257-286 12-41 (47)
354 COG3391 Uncharacterized conser 93.8 18 0.00038 42.7 27.1 115 257-397 74-196 (381)
355 KOG4649 PQQ (pyrrolo-quinoline 93.4 14 0.0003 40.1 24.4 83 267-370 62-145 (354)
356 KOG1897 Damage-specific DNA bi 93.3 32 0.00069 44.0 37.2 104 319-427 776-895 (1096)
357 PRK13616 lipoprotein LpqB; Pro 93.2 8.2 0.00018 48.1 21.9 92 257-372 350-459 (591)
358 KOG3617 WD40 and TPR repeat-co 93.2 0.13 2.8E-06 62.6 5.8 106 260-391 19-131 (1416)
359 PRK13616 lipoprotein LpqB; Pro 93.2 5.4 0.00012 49.7 20.1 116 209-343 350-472 (591)
360 cd00216 PQQ_DH Dehydrogenases 93.1 27 0.00059 42.7 29.8 74 472-555 364-437 (488)
361 COG3204 Uncharacterized protei 93.1 17 0.00038 40.3 22.0 171 203-399 80-251 (316)
362 PF12894 Apc4_WD40: Anaphase-p 92.9 0.26 5.6E-06 39.2 5.3 33 317-349 11-43 (47)
363 PF14783 BBS2_Mid: Ciliary BBS 91.3 7 0.00015 37.1 13.7 61 264-347 10-71 (111)
364 COG3391 Uncharacterized conser 91.1 38 0.00082 40.0 24.1 208 71-357 77-293 (381)
365 KOG1275 PAB-dependent poly(A) 90.9 4.3 9.4E-05 50.8 14.9 157 135-346 180-341 (1118)
366 PF08553 VID27: VID27 cytoplas 90.8 1.7 3.7E-05 55.0 12.0 104 221-346 543-646 (794)
367 PF00780 CNH: CNH domain; Int 90.8 30 0.00066 38.4 25.3 121 210-351 37-169 (275)
368 PF07995 GSDH: Glucose / Sorbo 90.7 6.7 0.00014 45.3 16.2 119 211-340 4-136 (331)
369 PF06977 SdiA-regulated: SdiA- 90.4 21 0.00045 39.3 18.8 120 23-161 25-148 (248)
370 PF00780 CNH: CNH domain; Int 90.4 33 0.00071 38.1 26.2 61 266-348 5-65 (275)
371 PF02897 Peptidase_S9_N: Proly 90.4 45 0.00098 39.6 30.5 58 261-338 128-190 (414)
372 COG3490 Uncharacterized protei 90.0 21 0.00046 39.4 17.5 30 257-286 280-310 (366)
373 KOG1008 Uncharacterized conser 90.0 0.088 1.9E-06 62.6 -0.1 156 209-389 57-223 (783)
374 KOG2444 WD40 repeat protein [G 89.7 1.1 2.3E-05 47.7 7.5 104 220-347 70-177 (238)
375 PF10168 Nup88: Nuclear pore c 89.5 6.3 0.00014 50.1 15.5 76 25-100 90-182 (717)
376 PF03178 CPSF_A: CPSF A subuni 89.5 44 0.00096 38.2 22.5 151 79-287 42-203 (321)
377 PF10647 Gmad1: Lipoprotein Lp 88.7 15 0.00032 40.7 16.3 116 210-339 67-187 (253)
378 PF10647 Gmad1: Lipoprotein Lp 88.7 25 0.00055 38.9 18.1 95 258-372 25-123 (253)
379 PF07995 GSDH: Glucose / Sorbo 88.6 53 0.0011 37.9 30.0 59 25-86 7-71 (331)
380 KOG3630 Nuclear pore complex, 87.1 6.7 0.00014 50.4 13.1 106 207-334 154-260 (1405)
381 KOG2395 Protein involved in va 87.0 3.6 7.8E-05 48.6 10.1 115 211-346 378-499 (644)
382 PF10168 Nup88: Nuclear pore c 86.4 12 0.00025 47.7 15.2 129 210-348 32-180 (717)
383 TIGR02604 Piru_Ver_Nterm putat 86.2 22 0.00048 41.7 16.7 115 209-337 14-143 (367)
384 KOG2280 Vacuolar assembly/sort 86.0 31 0.00067 42.9 17.5 31 208-238 216-246 (829)
385 KOG2280 Vacuolar assembly/sort 85.9 20 0.00043 44.5 15.8 59 462-522 216-275 (829)
386 PF03178 CPSF_A: CPSF A subuni 85.3 51 0.0011 37.7 19.0 151 319-491 28-202 (321)
387 PF12657 TFIIIC_delta: Transcr 84.8 3.1 6.8E-05 43.1 7.8 77 21-98 6-122 (173)
388 COG3490 Uncharacterized protei 84.4 73 0.0016 35.4 19.8 67 462-539 279-348 (366)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 84.3 99 0.0021 36.8 27.8 46 316-361 306-351 (415)
390 PF02897 Peptidase_S9_N: Proly 83.7 1E+02 0.0022 36.6 27.0 34 319-352 125-163 (414)
391 KOG2377 Uncharacterized conser 83.5 1E+02 0.0022 36.4 20.4 113 214-347 28-140 (657)
392 PF15390 DUF4613: Domain of un 83.3 1.1E+02 0.0023 37.6 19.9 60 261-337 343-404 (671)
393 KOG1645 RING-finger-containing 82.7 6.4 0.00014 45.0 9.3 74 314-392 190-267 (463)
394 KOG2444 WD40 repeat protein [G 82.7 4.2 9.1E-05 43.3 7.5 74 268-358 70-143 (238)
395 KOG1897 Damage-specific DNA bi 82.5 1.6E+02 0.0035 38.1 37.3 131 208-355 530-667 (1096)
396 KOG4649 PQQ (pyrrolo-quinoline 82.4 82 0.0018 34.5 22.1 62 219-287 62-124 (354)
397 TIGR02604 Piru_Ver_Nterm putat 81.4 48 0.001 38.8 16.9 99 257-372 14-135 (367)
398 PF12234 Rav1p_C: RAVE protein 81.0 43 0.00094 41.8 16.5 72 257-346 30-103 (631)
399 KOG3630 Nuclear pore complex, 80.7 7.6 0.00016 49.9 9.8 124 206-348 98-229 (1405)
400 PRK10115 protease 2; Provision 80.3 1.8E+02 0.004 37.2 24.6 59 259-338 129-192 (686)
401 COG3386 Gluconolactonase [Carb 78.7 1.3E+02 0.0028 34.4 20.1 97 258-368 164-262 (307)
402 KOG2377 Uncharacterized conser 78.5 90 0.0019 36.8 16.6 70 25-100 28-99 (657)
403 PRK13684 Ycf48-like protein; P 78.3 1.4E+02 0.003 34.6 21.0 123 208-354 172-294 (334)
404 PF08553 VID27: VID27 cytoplas 78.3 17 0.00037 46.4 12.1 85 271-372 545-630 (794)
405 PF14781 BBS2_N: Ciliary BBSom 77.9 46 0.001 32.8 12.3 119 215-355 5-133 (136)
406 PF11635 Med16: Mediator compl 77.8 2.1E+02 0.0045 37.1 22.1 76 206-281 257-345 (753)
407 PF05694 SBP56: 56kDa selenium 77.8 70 0.0015 37.9 15.8 75 258-336 313-392 (461)
408 PF10313 DUF2415: Uncharacteri 76.8 6.6 0.00014 30.5 4.9 31 318-348 1-34 (43)
409 COG5290 IkappaB kinase complex 76.5 14 0.00031 45.6 10.1 71 212-287 250-325 (1243)
410 KOG1916 Nuclear protein, conta 76.1 0.81 1.8E-05 56.6 -0.2 144 264-428 191-372 (1283)
411 TIGR03606 non_repeat_PQQ dehyd 75.5 49 0.0011 39.8 14.4 60 209-268 30-90 (454)
412 PF14781 BBS2_N: Ciliary BBSom 75.4 89 0.0019 30.9 14.3 122 262-398 4-132 (136)
413 PHA02713 hypothetical protein; 74.1 86 0.0019 39.1 16.8 27 473-499 512-541 (557)
414 PF12234 Rav1p_C: RAVE protein 73.9 22 0.00049 44.2 11.3 83 5-96 17-103 (631)
415 PF11715 Nup160: Nucleoporin N 73.4 7.2 0.00016 48.4 7.2 87 266-355 156-256 (547)
416 PF14761 HPS3_N: Hermansky-Pud 72.9 67 0.0015 34.4 13.0 111 140-286 25-163 (215)
417 KOG4499 Ca2+-binding protein R 72.7 1.5E+02 0.0032 32.2 16.0 102 259-370 160-263 (310)
418 PF15390 DUF4613: Domain of un 71.6 46 0.00099 40.5 12.5 122 208-347 56-186 (671)
419 PHA03098 kelch-like protein; P 71.5 1.3E+02 0.0029 37.0 17.9 28 473-500 487-520 (534)
420 cd00216 PQQ_DH Dehydrogenases 71.3 2.5E+02 0.0054 34.3 26.6 27 330-356 111-137 (488)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 71.3 13 0.00029 44.0 8.3 84 258-356 309-407 (415)
422 PF10313 DUF2415: Uncharacteri 71.3 8.6 0.00019 29.9 4.4 31 68-98 1-34 (43)
423 PF07676 PD40: WD40-like Beta 70.1 6.9 0.00015 29.4 3.8 27 68-94 9-38 (39)
424 PF08728 CRT10: CRT10; InterP 69.6 1.2E+02 0.0026 38.4 16.1 121 209-346 101-245 (717)
425 KOG4441 Proteins containing BT 69.4 2.2E+02 0.0048 35.6 18.8 67 471-539 425-499 (571)
426 KOG2395 Protein involved in va 67.9 52 0.0011 39.4 11.7 142 327-490 343-499 (644)
427 PHA02790 Kelch-like protein; P 67.6 1.5E+02 0.0033 36.1 16.8 64 471-538 405-469 (480)
428 PLN00033 photosystem II stabil 67.0 2.6E+02 0.0057 33.2 17.9 115 259-399 241-363 (398)
429 COG4590 ABC-type uncharacteriz 67.0 33 0.00072 40.0 9.8 166 69-287 222-387 (733)
430 PHA03098 kelch-like protein; P 64.9 1.3E+02 0.0029 37.1 15.9 67 471-538 435-510 (534)
431 PF07676 PD40: WD40-like Beta 63.5 22 0.00049 26.5 5.5 29 316-344 7-38 (39)
432 PF14761 HPS3_N: Hermansky-Pud 61.6 2.3E+02 0.005 30.4 14.8 46 330-381 29-76 (215)
433 PF05694 SBP56: 56kDa selenium 60.8 3.6E+02 0.0077 32.2 18.1 30 464-493 313-344 (461)
434 PF12341 DUF3639: Protein of u 60.7 14 0.00031 25.7 3.4 24 70-95 4-27 (27)
435 PF14583 Pectate_lyase22: Olig 60.4 3.4E+02 0.0074 31.9 20.2 227 215-494 42-331 (386)
436 PLN00033 photosystem II stabil 60.1 3.6E+02 0.0077 32.1 18.3 148 210-383 240-389 (398)
437 TIGR03074 PQQ_membr_DH membran 58.1 5.3E+02 0.012 33.5 21.4 22 473-494 455-480 (764)
438 KOG1898 Splicing factor 3b, su 56.8 5.9E+02 0.013 33.6 31.9 76 20-100 538-621 (1205)
439 PF07569 Hira: TUP1-like enhan 54.5 46 0.001 36.0 8.1 70 216-286 18-95 (219)
440 COG3386 Gluconolactonase [Carb 54.3 3.8E+02 0.0083 30.6 22.2 109 209-337 163-275 (307)
441 PHA02713 hypothetical protein; 52.9 5.5E+02 0.012 32.0 19.9 64 471-538 461-532 (557)
442 PF10214 Rrn6: RNA polymerase 50.7 5.9E+02 0.013 33.2 18.6 158 206-371 77-257 (765)
443 PF07569 Hira: TUP1-like enhan 50.1 63 0.0014 34.9 8.2 81 263-349 17-97 (219)
444 PF11715 Nup160: Nucleoporin N 49.9 59 0.0013 40.4 9.2 69 218-286 156-248 (547)
445 KOG1916 Nuclear protein, conta 49.7 23 0.00049 44.7 5.1 24 216-239 243-266 (1283)
446 PHA02790 Kelch-like protein; P 49.3 5.7E+02 0.012 31.1 17.4 27 472-498 445-477 (480)
447 COG5290 IkappaB kinase complex 47.7 3.4E+02 0.0074 34.4 14.2 29 209-237 113-141 (1243)
448 TIGR01063 gyrA DNA gyrase, A s 47.6 7.8E+02 0.017 32.2 23.3 79 209-287 639-719 (800)
449 PF13449 Phytase-like: Esteras 47.6 2.4E+02 0.0052 32.4 13.1 124 209-338 20-167 (326)
450 PRK13684 Ycf48-like protein; P 46.2 5.2E+02 0.011 29.8 29.3 119 257-399 173-295 (334)
451 KOG4460 Nuclear pore complex, 45.5 2.4E+02 0.0051 34.1 12.1 84 257-350 104-201 (741)
452 KOG4460 Nuclear pore complex, 44.8 96 0.0021 37.2 8.9 75 25-99 109-200 (741)
453 COG4590 ABC-type uncharacteriz 44.1 3E+02 0.0064 32.6 12.4 154 361-539 221-386 (733)
454 COG5167 VID27 Protein involved 44.0 1.2E+02 0.0026 36.3 9.4 61 268-348 573-633 (776)
455 PF14870 PSII_BNR: Photosynthe 41.0 5.9E+02 0.013 29.0 30.1 120 257-400 145-269 (302)
456 TIGR03075 PQQ_enz_alc_DH PQQ-d 40.8 7.9E+02 0.017 30.4 19.9 195 268-494 69-336 (527)
457 PF12657 TFIIIC_delta: Transcr 40.2 1.3E+02 0.0028 31.0 8.5 32 318-349 86-123 (173)
458 TIGR02276 beta_rpt_yvtn 40-res 39.7 1.1E+02 0.0023 22.8 6.0 31 327-357 1-32 (42)
459 KOG1983 Tomosyn and related SN 39.0 1.1E+03 0.024 31.6 20.4 26 326-351 243-268 (993)
460 PF11134 Phage_stabilise: Phag 38.6 7.5E+02 0.016 29.5 15.2 50 473-522 296-350 (469)
461 KOG1062 Vesicle coat complex A 38.5 1.7E+02 0.0036 37.1 10.0 162 768-944 178-402 (866)
462 KOG3616 Selective LIM binding 36.5 2E+02 0.0043 35.9 9.9 21 410-430 23-44 (1636)
463 PF08728 CRT10: CRT10; InterP 32.8 7.8E+02 0.017 31.5 14.7 76 208-286 163-246 (717)
464 KOG1900 Nuclear pore complex, 31.3 3.3E+02 0.0071 36.7 11.3 167 39-239 98-273 (1311)
465 PF12768 Rax2: Cortical protei 31.2 3.4E+02 0.0075 30.5 10.5 96 483-581 16-121 (281)
466 TIGR03606 non_repeat_PQQ dehyd 30.3 8.2E+02 0.018 29.6 14.0 30 257-286 30-59 (454)
467 PF13432 TPR_16: Tetratricopep 28.8 1.8E+02 0.004 23.9 6.2 59 882-942 5-63 (65)
468 COG2133 Glucose/sorbosone dehy 28.3 8.6E+02 0.019 28.9 13.4 75 321-402 180-260 (399)
469 cd07357 HN_L-whirlin_R2_like S 26.7 76 0.0016 28.2 3.3 51 987-1048 3-56 (81)
470 PF12768 Rax2: Cortical protei 26.6 4.5E+02 0.0098 29.6 10.4 53 316-369 35-97 (281)
471 TIGR01063 gyrA DNA gyrase, A s 26.1 1.6E+03 0.034 29.4 22.0 78 209-286 689-769 (800)
472 PF14870 PSII_BNR: Photosynthe 25.7 1E+03 0.022 27.1 26.0 249 207-498 15-268 (302)
473 PF01436 NHL: NHL repeat; Int 23.1 1.9E+02 0.004 20.1 4.2 25 259-283 4-28 (28)
474 PRK05560 DNA gyrase subunit A; 22.8 1.8E+03 0.039 28.9 20.5 223 77-346 496-720 (805)
475 PF03378 CAS_CSE1: CAS/CSE pro 22.3 3.8E+02 0.0081 32.3 9.3 110 799-939 156-270 (435)
476 KOG1983 Tomosyn and related SN 22.1 1.1E+03 0.025 31.6 14.4 42 457-498 229-271 (993)
477 TIGR01062 parC_Gneg DNA topois 21.8 1.8E+03 0.039 28.6 18.2 78 209-287 525-606 (735)
478 PF14559 TPR_19: Tetratricopep 21.5 2.1E+02 0.0047 23.6 5.3 57 884-942 1-57 (68)
479 PF01417 ENTH: ENTH domain; I 21.5 5.5E+02 0.012 24.8 8.8 83 836-922 22-121 (125)
480 PF04840 Vps16_C: Vps16, C-ter 21.4 4.9E+02 0.011 29.9 9.7 60 863-933 220-285 (319)
481 KOG2247 WD40 repeat-containing 20.4 19 0.00041 42.6 -2.0 112 209-348 75-189 (615)
482 PRK10115 protease 2; Provision 20.4 1.9E+03 0.04 28.1 30.1 70 209-286 127-207 (686)
No 1
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-99 Score=894.84 Aligned_cols=827 Identities=33% Similarity=0.439 Sum_probs=657.9
Q ss_pred cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE
Q 001165 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY 307 (1134)
Q Consensus 228 sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~ 307 (1134)
+||+...+..+..+......+...+ ...++++|++++..++++|+|...|.+.+|+.++.++.......
T Consensus 121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~---------- 189 (1023)
T KOG2006|consen 121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNR---------- 189 (1023)
T ss_pred ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecc----------
Confidence 7888777666553333222222211 12478999999999999999999999999999854432211111
Q ss_pred EeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEE
Q 001165 308 TFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQ 387 (1134)
Q Consensus 308 ~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~ 387 (1134)
...+++-++..+.|+|+++.++.++..|...+|+..++..+.+...-.........|+|.-.....+-.+......
T Consensus 190 ----~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q 265 (1023)
T KOG2006|consen 190 ----DDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQ 265 (1023)
T ss_pred ----cCccccccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhh
Confidence 1112555889999999999999999999999999999887777665434455566666654222223333346667
Q ss_pred EeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCC---CccccccccccceeeccCCCc
Q 001165 388 WDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWP 464 (1134)
Q Consensus 388 W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~---~~~~~w~~~~~~~~~~~h~~~ 464 (1134)
|...+..++.........+..+.....+ + ..+++.......+.....+....+ ++...|.++++|.+|...|||
T Consensus 266 ~~e~~~~L~~~~~~~~~~~~~~~s~sc~-~--~S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwp 342 (1023)
T KOG2006|consen 266 WEEVGIVLFPHGEQILTISDFKVSKSCL-V--ESKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWP 342 (1023)
T ss_pred ccceeeeeecccccccchhheeeccccc-c--cccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCc
Confidence 8877777766533222222111111111 0 022222222233333333332222 344579999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEccCCcEEEeCCccceeeeEEE-EEEeeCCEEEEEEEecCCCeeEEEEEeCC-CCC
Q 001165 465 VQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLD 542 (1134)
Q Consensus 465 V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk~F~~~~~e~~~~v~-gl~W~~~~lv~~~~~~~~~~~eLrly~~~-~ld 542 (1134)
|++++.++||.++|+||..|.++|+..+++||.|+++.||+.+.|+ |+.|+++++++||+...+..+++++|+++ ++|
T Consensus 343 iry~s~~~dg~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~d 422 (1023)
T KOG2006|consen 343 IRYVSIDYDGKHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLD 422 (1023)
T ss_pred eeEEeecCCccEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccc
Confidence 9999999999999999999999999999999999999999999988 49999999999999999999999999998 777
Q ss_pred CcceeEEEecCCccEEEEecCCEEEEEEcCCeEEEEEEEEecccCCCCCCeEEEEEEEEEEeeccccCCceeEEccCCCc
Q 001165 543 QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVP 622 (1134)
Q Consensus 543 ~~~~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~p~~v~~i~~~~~ 622 (1134)
+. +.+.......+..+.+.++.+++++.++.+.+|++..+. ...+.+..+++++++.++.||++|++++.+.|
T Consensus 423 n~-~a~k~~~~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~ 495 (1023)
T KOG2006|consen 423 NN-LAHKSAASAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSP 495 (1023)
T ss_pred hh-hccchhhhhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCc
Confidence 74 444333333344456677888889999999999886433 45678889999999999999999999999887
Q ss_pred ccccccCCCCCcccccccCCcceEEEeeCCEEEEEecCC-------CceeeeccceeEEEEccCCCcccccccceeeEEE
Q 001165 623 RECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLD 695 (1134)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~lil~~~g~l~~l~~~~-------~~~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~ 695 (1134)
++....+ .+ .+.+ ..+....+|.+.++.... ..+..++.+||++|++. +. .. ..+.+..|+.
T Consensus 496 ~l~~i~~-~~-l~~~------~~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~s-s~-~~-~~~~d~~Wl~ 564 (1023)
T KOG2006|consen 496 SLANIGN-DN-LQFY------KSITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNS-SF-ED-QQVLDLHWLG 564 (1023)
T ss_pred cccccCc-cc-hhHh------hhhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCc-HH-hh-hhhhhceeec
Confidence 6432110 11 1111 222333455555544322 24578999999999883 22 22 2455778889
Q ss_pred ECCCC-----cEEe---------ccC-----CCCCCCCccccccCCCccccCCCceeeeeccCCcEEEEEEEeeeecccC
Q 001165 696 YGYRG-----MQVW---------YPS-----PGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACT 756 (1134)
Q Consensus 696 ~~~~g-----~~vw---------~~~-----~~~~~~~~~~~~~~~~~l~f~~~~yPl~i~~~~~~i~G~~~~~~~~~~~ 756 (1134)
+|..| |+.| ++. .+.+.+..++|.++++|++|++++|||.++++++++.|++|++....+.
T Consensus 565 ~g~~~~~~~~~~g~~~~l~~~~~~~~g~~~~~~~~~~~~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa 644 (1023)
T KOG2006|consen 565 DGANGCHMKNMDGCPNHLCLALWLSEGNVWDLVMDAYRVPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASA 644 (1023)
T ss_pred cCCCccccccccCCccccccceeecccchhhcccccccCchhhhhccccccchhhceeeeecccceeeeccchhhhhhhc
Confidence 99999 6655 333 3456778899999999999999999999999999999999987654433
Q ss_pred -----CCcccccCCcccccHHHHHH--HHHhcCcHHHHHHHHHHcCCCCCchhHHHHHHHHHhhcccccccccccccCCc
Q 001165 757 -----EFPCFEPTPQAQTILHCLLR--HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIP 829 (1134)
Q Consensus 757 -----~~~~~~~~~~~~~~L~~il~--~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vLe~e~~~~~~~~~~~~i~ 829 (1134)
.+++.-..++|++|+|.+++ ++|+||.++.|+.+|+.|+.+|||+|+||+|||+|||+|+++++| ||
T Consensus 645 ~~~~~~~~f~v~~~~h~~~l~~i~~l~q~lkrnl~~~aLllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p------~~ 718 (1023)
T KOG2006|consen 645 EIILFTLTFDVQERLHQIYLHIILHLYQLLKRNLGEDALLLAQECAILPHFTHALELLLHFVLEEEATSSEP------IP 718 (1023)
T ss_pred cccccccchHHhhhhhhhHHHHHHHHHHHHHhhccHHHHHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCC------cc
Confidence 34444556889999999999 999999999999999999999999999999999999999999864 88
Q ss_pred cccchhhhHHHHHHHHhcCchhHHHHHhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHHhHHhhhhhccCchhh
Q 001165 830 KRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVS 909 (1134)
Q Consensus 830 ~~~~~~~ll~~v~~fi~~f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~ 909 (1134)
| ++||++++||++||+|+++|||||||||.++|++||+++|.|+||||+||++.+++|||+||||+||+|+++++
T Consensus 719 d-----~~l~~i~d~I~eFp~fl~~vv~caRKTe~~lW~~lF~~~G~PkdLfe~Clqt~~~~tAA~~Liilqnle~savs 793 (1023)
T KOG2006|consen 719 D-----KLLPKIIDFIREFPEFLKTVVNCARKTEAALWPDLFSAVGIPKDLFEECLQTEDLDTAASYLIILQNLEGSAVS 793 (1023)
T ss_pred c-----hhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhcCCcHHHHHHHhhccchhhhceeeeeeeccccchhH
Confidence 7 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchHhHHHHHHHhhhccccccccCCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCcchHHHH
Q 001165 910 QYSALRLLQATLDECLYELAGELVRFLLRSGREYEQASTDSDKLSPRFLGYFLFPSSYRRPSLDKSTSFKEQSPNVASVK 989 (1134)
Q Consensus 910 ~~~a~~Ll~~al~~~~w~l~~eL~RFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1134)
+++|++|+++||++++||+|+||+|||++|||+..+.|+- ..++.+.+.+|.|++.++.++..+.....
T Consensus 794 ~~~a~~L~q~aL~~~kwdl~~Elirfl~~i~p~~~~~~~~-----------~~~~~~~~~~s~d~~~~f~~~~~~~~~~~ 862 (1023)
T KOG2006|consen 794 VQHALRLLQLALEEKKWDLAKELIRFLRSIGPEKIDLPTK-----------LIATPTLRSPSLDKSLEFIDQRNNVLSEH 862 (1023)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhcCcchhhccch-----------hccCccccCccchhhhHHHHhhccccccc
Confidence 9999999999999999999999999999999997766540 12334567788899888888877777788
Q ss_pred HHHHHHHHhhhcccchhhHHHHHhccCCChHHHhhhcCccceecccHHHHHHHHhhhcccccccccccHHHHHHhhcccc
Q 001165 990 NILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKLQMGTLQSRLDAEFLLAHMCSVK 1069 (1134)
Q Consensus 990 ~~l~~~a~~l~~~~~l~~l~~f~~~~~f~~~~~l~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1134)
.|++.|+..+++....-.+..+.++.+++.-. +--++..+|...-++..|+.++.++++.+|++.||.+.
T Consensus 863 ~~~~~~~s~~~s~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~l~~~i~~~l~~ha~~lL~~~~l~dlg~~~~ 932 (1023)
T KOG2006|consen 863 AILESVHSSMLSIQKNCKRKSGTKGWNHDKTN----------LKQTPRDRLALCIDEILARHARVLLLNFLLLDLGCFGA 932 (1023)
T ss_pred cccCCccchhhccccccccccCCCCcccchhh----------cccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 89999999999999999999999999987765 66788899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhhHHHHHhccCHHHHHHHHHhhccchhHHhHHHHHHHHH
Q 001165 1070 FKEWIVVLATLLRRSEVLFDLFRHDMRLWEAYAITLQSYPAFAEYHDLLEALD 1122 (1134)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1134)
+.+|.++.++..+|.++...-+..+.+.|.+|..+|..+-.||+|.|...+.+
T Consensus 933 ~l~f~l~~~l~~er~~~~~~~~~~~~~~~l~~~~~l~l~~~~a~~~~~~~~~g 985 (1023)
T KOG2006|consen 933 DLHFKLVSLLTEERKRAADNDTFKSELSVLHEDFDLELPLKVAQLLDTSQING 985 (1023)
T ss_pred hcceeehhhhHHHHHHHhcCchhhhHHHHHHHhhccccchhhHhhcchHhhcc
Confidence 99999999999999999999999999999999999999999999999999887
No 2
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=100.00 E-value=1.2e-64 Score=547.15 Aligned_cols=247 Identities=40% Similarity=0.640 Sum_probs=224.9
Q ss_pred eeeEEEECCCCcEEeccCCCC--CCCCccccccCCCccccCCCceeeeeccCCcEEEEEEEeeeecccCCCcccccCCcc
Q 001165 690 EVSWLDYGYRGMQVWYPSPGV--DPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQA 767 (1134)
Q Consensus 690 ~~~~~~~~~~g~~vw~~~~~~--~~~~~~~~~~~~~~l~f~~~~yPl~i~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~ 767 (1134)
+.+|+.||++||+||+|+.+. .+...+.+.+++++++ .|+|||+|++++|+++|+++++..+++..+|++++.+++
T Consensus 4 ~~lW~~~g~~~~~vW~~~~~~~~~~~~~~~~~~~~i~l~--~d~yPlsil~~~gii~Gv~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PF07064_consen 4 DSLWLFCGAQGMKVWLPVFPVSPASSDSHSFLSKRIMLP--SDFYPLSILSEKGIILGVEQDTSQRRSSSFPFFKFEIKT 81 (258)
T ss_pred cceehhcCcccceeecccccccccccccccccccCccCC--ccccceEEEcCCcEEEEEEEEeeccCCcCccceEeecCc
Confidence 445666666999999999876 2344455555555555 999999999999999999999988888999999999999
Q ss_pred cccHHHHHHHHHhcCcHHHHHHHHHHcCCCCCchhHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHHhc
Q 001165 768 QTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRN 847 (1134)
Q Consensus 768 ~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vLe~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~ 847 (1134)
|+|||+||+++|++|++.+|++|+++|+++|||+||||+|||+|||+|++.+.++ +++ +++|++|++||++
T Consensus 82 ~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~----~~~-----~~~L~~v~~ll~~ 152 (258)
T PF07064_consen 82 QLFLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDS----PIP-----DALLPRVISLLQE 152 (258)
T ss_pred eechHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccc----cch-----HHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999875321 223 3899999999999
Q ss_pred CchhHHHHHhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHHhHHhhhhhccCchh-----hHHHHHHHHHHHhc
Q 001165 848 FPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAV-----SQYSALRLLQATLD 922 (1134)
Q Consensus 848 f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~-----~~~~a~~Ll~~al~ 922 (1134)
||+|++||||||||||+++|++||+++|+|+|||++||++|+++|||+||||+||+|+.+. ++++|++||++|++
T Consensus 153 f~~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 153 FPEYLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred CcchHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cchHhHHHHHHHhhhccccccccCC
Q 001165 923 ECLYELAGELVRFLLRSGREYEQAS 947 (1134)
Q Consensus 923 ~~~w~l~~eL~RFl~~~~~~~~~~~ 947 (1134)
+++||||+||+|||++||+++++++
T Consensus 233 ~~~w~Lc~eL~RFL~~ld~~~~~l~ 257 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALDPEGNTLP 257 (258)
T ss_pred cccHHHHHHHHHHHHHhCcccCcCC
Confidence 9999999999999999999988654
No 3
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=341.38 Aligned_cols=634 Identities=15% Similarity=0.175 Sum_probs=435.7
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEE--EeeeCCC
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s~d~~ 143 (1134)
+...+.+|.|-|---.+.++-.+|.|.||+-++.. ..+ + +...+.+|. .|...-+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt---mVk----------s----------feV~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT---MVK----------S----------FEVSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccce---eee----------e----------eeecccchhhheeeeccc
Confidence 34568899999999999999999999999987531 111 0 001112222 2333446
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
-+++|+.|..|+++..+.. ... ..+..|...|.+++.+|..-++
T Consensus 69 Wiv~GsDD~~IrVfnynt~--ekV----------------------------------~~FeAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTG--EKV----------------------------------KTFEAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred eEEEecCCceEEEEecccc--eee----------------------------------EEeeccccceeeeeecCCCCeE
Confidence 7899999999998876532 111 1356788999999999999999
Q ss_pred EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCc
Q 001165 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGM 302 (1134)
Q Consensus 224 a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~ 302 (1134)
.+++.|-.+.+|+..+.=.. .+... .|..-+.+++||| |.+.+|+||-|+||+||.+. +
T Consensus 113 LtsSDDm~iKlW~we~~wa~-~qtfe----GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg---------------s 172 (794)
T KOG0276|consen 113 LTSSDDMTIKLWDWENEWAC-EQTFE----GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG---------------S 172 (794)
T ss_pred EecCCccEEEEeeccCceee-eeEEc----CcceEEEEEEecCCCccceeeeeccccEEEEEcC---------------C
Confidence 99999999999998642110 00010 1334578999999 56689999999999999999 7
Q ss_pred ceEEEEeecccCCCCcCeEEEEECCCC--CEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEE
Q 001165 303 REVYYTFCRYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V~~l~fSPDG--~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
..+..|+.| |...|+||.|-|-| -+|+||++|.+++|||..+..|++|++|| ...|+.+.|+|.- ..++
T Consensus 173 ~~~nfTl~g----HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piii 243 (794)
T KOG0276|consen 173 PHPNFTLEG----HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIII 243 (794)
T ss_pred CCCceeeec----cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEE
Confidence 778888888 99999999999855 49999999999999999999999999998 7899999999987 8899
Q ss_pred Ecc---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeE-------EEeecCC-Cc-
Q 001165 381 SGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRL-------LVVQSED-TD- 445 (1134)
Q Consensus 381 sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l-------~l~~g~~-~~- 445 (1134)
||+ ++++|+..++++-....-.-+++|++.. ...++.|...|.+.+ .+-..+..+ .+...+. ..
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~ 322 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQA 322 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeee
Confidence 998 9999999999886665544566666653 333444444444322 111111110 1111110 00
Q ss_pred ----------cc-cccccccceeeccCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEccCCcEEEeCCccceeeeEEEEEE
Q 001165 446 ----------EL-KILHLNLPVSYISQNW-PVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLL 513 (1134)
Q Consensus 446 ----------~~-~w~~~~~~~~~~~h~~-~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk~F~~~~~e~~~~v~gl~ 513 (1134)
++ .-..+++...-++... --..++-||+|++++++|+...++|....-|-|.||. ...+.
T Consensus 323 ~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~--------~~eFv 394 (794)
T KOG0276|consen 323 VNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGS--------GLEFV 394 (794)
T ss_pred eeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhccccc--------ceeEE
Confidence 00 0011111111222222 1235788999999999998778899987766677763 34578
Q ss_pred eeCC--EEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEEecCCEEEEEEcCCeEEEEEEEEecccCCCCC
Q 001165 514 WLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTT 591 (1134)
Q Consensus 514 W~~~--~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~~~~~~~~~~~~~ 591 (1134)
|..+ ..++ + +....+.+| +. +-....+..+......+++.++...+++.+++|+|+ ++.
T Consensus 395 w~~dsne~av--R---es~~~vki~-kn------fke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~-~~~------ 455 (794)
T KOG0276|consen 395 WAADSNEFAV--R---ESNGNVKIF-KN------FKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWE-SGE------ 455 (794)
T ss_pred EcCCCCeEEE--E---ecCCceEEE-ec------ceeccccccccceeeecCCceEEEEeCCeEEEEEcc-cce------
Confidence 8655 2222 1 334556777 42 222233333444667788999999999999999997 232
Q ss_pred CeEEEEEEEEEEeeccccCCceeEEccCCCcccccccCCCCCcccccccCCcceEEEeeCCEEEEEecCCCc--------
Q 001165 592 PDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGR-------- 663 (1134)
Q Consensus 592 ~~~~l~~~~~i~~~~~~~~p~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~~~g~l~~l~~~~~~-------- 663 (1134)
.||+|.+. ...|.|. +.+.-+++.....++||.+|-+.+.-..+.+.
T Consensus 456 ------lVrrI~v~--------~k~v~w~-----------d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGie 510 (794)
T KOG0276|consen 456 ------LVRRIEVT--------SKHVYWS-----------DNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIE 510 (794)
T ss_pred ------EEEEEeec--------cceeEEe-----------cCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHH
Confidence 37788763 1223332 11233344444457777777766554333221
Q ss_pred --eeeeccceeEEEEccCCCcccccccceeeEEEECCCCcEEeccCCCCCCCCccccccCCCccccCCCceeeeeccCCc
Q 001165 664 --ERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAG 741 (1134)
Q Consensus 664 --~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~~l~f~~~~yPl~i~~~~~ 741 (1134)
-.+|.+.-|+ +..+.|..++ ++|+....|+.|.+++. ...+..++..+|-||..+++.
T Consensus 511 dAfevLgE~sE~--v~tg~WvgD~--------fiytts~nrlnY~vgGe----------~~~v~h~~~~mylLgy~~~~~ 570 (794)
T KOG0276|consen 511 DAFEVLGEVSES--VKTGKWVGDC--------FIYTTSNNRLNYLVGGE----------TYTVAHLDRIMYLLGYVANDN 570 (794)
T ss_pred HHHHHHhhhhhh--eeeceeeeeE--------EEEeecccceeEEcCCc----------eEEEEEeccchhheeeeecCC
Confidence 1467777777 3344465555 88999999999888776 345677889999999999999
Q ss_pred EEEEEEEeeeecc-cCCCcccccCCcccccHHHHHHHHHhcCcHHHHHHHHHHcCCCCCchhHHHHHHHHHhhccccccc
Q 001165 742 VVVGVSQRMSFSA-CTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQN 820 (1134)
Q Consensus 742 ~i~G~~~~~~~~~-~~~~~~~~~~~~~~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vLe~e~~~~~ 820 (1134)
.++-.+.++.+-+ ++...++++ +.++.|++.+.|-.+..
T Consensus 571 rvYL~Dke~nVi~y~l~l~vley------------qt~vmrrd~~~a~~vLp---------------------------- 610 (794)
T KOG0276|consen 571 RVYLHDKELNVISYKILLEVLEY------------QTLVLRRDLEVADGVLP---------------------------- 610 (794)
T ss_pred EEEEeecccceEeEeeehHHHHH------------HHHhhhccccccccccc----------------------------
Confidence 9999998754321 233344444 34677777666653211
Q ss_pred ccccccCCccccchhhhHHHHHHHHhcCchhHHHHHhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHHhHHhhh
Q 001165 821 INKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVI 900 (1134)
Q Consensus 821 ~~~~~~~i~~~~~~~~ll~~v~~fi~~f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl 900 (1134)
.||. +...++..|++.. +|.|-..+.+-..+.+ ||.+|+.|+|++|.....
T Consensus 611 ------~I~k-----~~rt~va~Fle~~-g~~e~AL~~s~D~d~r---------------Felal~lgrl~iA~~la~-- 661 (794)
T KOG0276|consen 611 ------TIPK-----EIRTKVAHFLESQ-GMKEQALELSTDPDQR---------------FELALKLGRLDIAFDLAV-- 661 (794)
T ss_pred ------cCch-----hhhhhHHhHhhhc-cchHhhhhcCCChhhh---------------hhhhhhcCcHHHHHHHHH--
Confidence 4665 7889999999876 7777777777666666 999999999999999876
Q ss_pred hhccCchhhHHHHHHHHHHHhccchHhHHHHHHH
Q 001165 901 AKLEGPAVSQYSALRLLQATLDECLYELAGELVR 934 (1134)
Q Consensus 901 ~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~R 934 (1134)
++.+.+++.+|.+.|+..++..||.|-..
T Consensus 662 -----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 662 -----EANSEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred -----hhcchHHHHHHHHHHhhcccchhHHHHHH
Confidence 56678999999999999999999999753
No 4
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.8e-34 Score=324.95 Aligned_cols=401 Identities=16% Similarity=0.176 Sum_probs=289.5
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcce-eEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecC
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
...+.|||||++||++..+-+.||..-+... ....+.+...-+.++..++++.||-|++.|++++.|-+.+||.++...
T Consensus 99 v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k 178 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK 178 (893)
T ss_pred cceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence 4568999999999999999999999842111 122222222223467789999999999999999999999999997642
Q ss_pred cceecCCCCCCCcceeeEEEeeceeeccccccce-EEEe-eeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccc
Q 001165 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS-VSNI-VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1134)
Q Consensus 101 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-V~~~-s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~ 178 (1134)
. +.. ..+.++... |.|+ ..+...+++-+.||.+..|..+-.-........-..+
T Consensus 179 ~-~~~--------------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg--- 234 (893)
T KOG0291|consen 179 N-LFT--------------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEG--- 234 (893)
T ss_pred c-cce--------------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccc---
Confidence 2 110 012222222 3444 3466779999999999887655110000000000000
Q ss_pred cccccccCCCccccccCCC---cccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc---------
Q 001165 179 AALSHHFPSNGLASVDTSG---AFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE--------- 246 (1134)
Q Consensus 179 i~~i~~~~~~~l~s~~~~~---~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~--------- 246 (1134)
-.....-.++.. ..... ......+......|++.+|++..+.++++.++|...++.++.+..-+..
T Consensus 235 ~~d~~~~~~~Ee--k~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t 312 (893)
T KOG0291|consen 235 SDDEEMDEDGEE--KTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT 312 (893)
T ss_pred cccccccccchh--hhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence 000000000000 00000 0112234455588999999999999999999999988877653221100
Q ss_pred ------e--------------ecccccC----------CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeee
Q 001165 247 ------F--------------IKIDKEL----------GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1134)
Q Consensus 247 ------~--------------~~~~~~~----------~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~ 296 (1134)
+ +| .|+ |...++|+++||||++||+|+.||.|+|||..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVw--eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~---------- 380 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVW--EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ---------- 380 (893)
T ss_pred EEecccCCEEEEcCCccceEEEE--EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc----------
Confidence 0 01 011 35679999999999999999999999999999
Q ss_pred eeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCc
Q 001165 297 LYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 376 (1134)
Q Consensus 297 l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~ 376 (1134)
+|-+..|+.. |+..|+.+.|+.+|+.+.+++-||+|+.||+...+...|+........++++..|.|
T Consensus 381 -----SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG---- 447 (893)
T KOG0291|consen 381 -----SGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG---- 447 (893)
T ss_pred -----CceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----
Confidence 8889999887 999999999999999999999999999999999999999977544456888999988
Q ss_pred ceEEEcc----eeEEEeCCCceEEEEecCCCccEE--EEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccc
Q 001165 377 EPLMSGT----SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 449 (1134)
Q Consensus 377 ~~l~sgs----~i~~W~~~~~~l~~~~~~h~~~v~--~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w 449 (1134)
+.+..|+ .|.+|+.++|+++-++.||.++|. .|++ +..++|+|.|.||++|++......
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-------------- 513 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-------------- 513 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce--------------
Confidence 7777776 899999999999999999999995 5777 899999999999999998654331
Q ss_pred cccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 450 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 450 ~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
.....+...+..++|+|||+-||+++-||.+ +||+..+
T Consensus 514 ------vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 514 ------VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred ------eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 2233455568899999999999999999999 9998755
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-35 Score=312.91 Aligned_cols=345 Identities=14% Similarity=0.138 Sum_probs=270.5
Q ss_pred cCCeEEEeecCCcceeEEEeecChhhHHhhc-ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCccee
Q 001165 38 SPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1134)
Q Consensus 38 s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~ 116 (1134)
+.+.|.|-+..|---.+....|...++..|+ .+.+++|||||+.||+|+.|.|+|+||+.+.......++|..-
T Consensus 85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~W----- 159 (480)
T KOG0271|consen 85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNW----- 159 (480)
T ss_pred hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccE-----
Confidence 3455655554322112223345555666554 5899999999999999999999999999875321122222211
Q ss_pred eEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCC
Q 001165 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (1134)
Q Consensus 117 s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~ 196 (1134)
....+++|||+.|++|+.||.|.+ ||.++....
T Consensus 160 ----------------VlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~----------------------------- 192 (480)
T KOG0271|consen 160 ----------------VLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQI----------------------------- 192 (480)
T ss_pred ----------------EEEEEECCCcchhhccccCCeEEE--ecCCCCCcc-----------------------------
Confidence 123456789999999999999986 676654432
Q ss_pred CcccccccCCCcccEEEEEEcC-----CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE
Q 001165 197 GAFVSDHKFPISSAIIWLELCL-----PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL 271 (1134)
Q Consensus 197 ~~~~~~~~~~~~~~V~~i~fsp-----~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll 271 (1134)
...+.+|...|++++|-| ..+.+|+++.||.+++|++....... .+ ..|...++|+.|--+| +|
T Consensus 193 ----g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~--~l----sgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 193 ----GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR--TL----SGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred ----cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE--Ee----ccCccceEEEEEcCCc-eE
Confidence 114678999999999955 56799999999999999986432211 11 1256889999998766 89
Q ss_pred EEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEEC-----------CCCC----------
Q 001165 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWT-----------PDNS---------- 330 (1134)
Q Consensus 272 AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fS-----------PDG~---------- 330 (1134)
.+|+.|++|++|+.. .|.+.++++| |...|+.++.| |.|+
T Consensus 262 ySgS~DrtIkvw~a~---------------dG~~~r~lkG----HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRAL---------------DGKLCRELKG----HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred EecCCCceEEEEEcc---------------chhHHHhhcc----cchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 999999999999998 7788888888 99999999888 3344
Q ss_pred ---------------EEEEEECCCcEEEEecCC-CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 331 ---------------AFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 331 ---------------~Lasg~~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
+|+||++|.++.+|+... .+++....+| ...|+.+.||||+ .+++|++ ++++|+..
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCC
Confidence 499999999999999854 3466666777 7899999999999 9999998 99999999
Q ss_pred CceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEE
Q 001165 392 GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 468 (1134)
Q Consensus 392 ~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~v 468 (1134)
+|+.+..++||-..|+++.+ .+.++|+|.|.|+++|++.+... ...+-||...|.++
T Consensus 398 tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 398 TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAV 457 (480)
T ss_pred CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEE
Confidence 99999999999999988777 67999999999999999876443 34567899999999
Q ss_pred EEcCCCCEEEEEeCCCeE-EEE
Q 001165 469 AASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 469 a~SpdG~~LAsgg~dG~i-lwd 489 (1134)
.+||||+.+|+||.|..+ +|.
T Consensus 458 DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCceeecCCCceEEEeec
Confidence 999999999999999999 884
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-33 Score=302.23 Aligned_cols=324 Identities=13% Similarity=0.169 Sum_probs=249.6
Q ss_pred CCcee--EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE
Q 001165 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 20 ~~~~i--v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l 96 (1134)
|.+++ ++|||+|+.||+++ |.|+++||++ ...|+-..++ |...+.+|+|||||+.||+|+.||.|++||.
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~Kg------H~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKG------HKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecC------CccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 56666 79999999999976 6799999997 5566655544 3557999999999999999999999999999
Q ss_pred EecCcce-ecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCC
Q 001165 97 QITEKSI-QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (1134)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~ 175 (1134)
.++.... ...+|. ..+.+++|.|-+. .+....+++++.||++++|+.... ...
T Consensus 187 ktg~~~g~~l~gH~---K~It~Lawep~hl-------------~p~~r~las~skDg~vrIWd~~~~--~~~-------- 240 (480)
T KOG0271|consen 187 KTGQQIGRALRGHK---KWITALAWEPLHL-------------VPPCRRLASSSKDGSVRIWDTKLG--TCV-------- 240 (480)
T ss_pred CCCCcccccccCcc---cceeEEeeccccc-------------CCCccceecccCCCCEEEEEccCc--eEE--------
Confidence 7754221 123333 2467788876542 223457889999999998543322 111
Q ss_pred ccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccC
Q 001165 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKEL 254 (1134)
Q Consensus 176 ~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~ 254 (1134)
..+.+|..+|+++.|--++ ++++++.|++|.+|+...+.. ....+|.. |.
T Consensus 241 --------------------------~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wv 291 (480)
T KOG0271|consen 241 --------------------------RTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WV 291 (480)
T ss_pred --------------------------EEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--he
Confidence 1356889999999887654 789999999999999865321 12222221 21
Q ss_pred CC-----CCe-EEEEECCCCCE-------------------------EEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 255 GS-----GDA-VCASIAPEQQI-------------------------LAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 255 ~~-----~~~-~~va~spdg~l-------------------------lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
+. +-+ ..-+|.|.++. +++|+.|.++.+|+... +.
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~--------------~k 357 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK--------------SK 357 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc--------------cc
Confidence 10 000 11244454444 99999999999999873 22
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
+++..+.| |..-|+.+.|||||+++|||+.|..|++||..+|+-+.+++|| -+.|..++++.|. +.++||+
T Consensus 358 kpi~rmtg----Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsaDs----RLlVS~S 428 (480)
T KOG0271|consen 358 KPITRMTG----HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSADS----RLLVSGS 428 (480)
T ss_pred cchhhhhc----hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-cceeEEEEeccCc----cEEEEcC
Confidence 34444455 9999999999999999999999999999999999999999998 7899999999998 8999998
Q ss_pred ---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeee
Q 001165 384 ---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 384 ---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~ 428 (1134)
++++|++.+.++..-+.||.+.|+++++ |+.+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999977665 99999999999999984
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-29 Score=289.38 Aligned_cols=462 Identities=17% Similarity=0.195 Sum_probs=313.0
Q ss_pred eEEEeecCeEEEEEcCC-eEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcc
Q 001165 24 IIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1134)
Q Consensus 24 iv~fS~dg~llAs~s~~-~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~ 102 (1134)
.+++||||.+|.++.++ ...+-+.- .+..+ +.... .+++-++.|||||+.+|++.. +.+.||......+.
T Consensus 60 ~ialSp~g~lllavdE~g~~~lvs~~-~r~Vl--h~f~f-----k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~ 130 (893)
T KOG0291|consen 60 RIALSPDGTLLLAVDERGRALLVSLL-SRSVL--HRFNF-----KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN 130 (893)
T ss_pred EEEeCCCceEEEEEcCCCcEEEEecc-cceee--EEEee-----cCccceEEECCCCcEEEEEec-ceeEEEecCcchhc
Confidence 38899999998887755 33333331 22222 11111 346789999999999999875 47999998654322
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
.+.+ . ... + ...++...|. .++.|...+++|+.|-+++++.-++..+ +
T Consensus 131 ~~~p-F------------vl~-r-~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~--~------------- 180 (893)
T KOG0291|consen 131 EFNP-F------------VLH-R-TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN--L------------- 180 (893)
T ss_pred ccCc-c------------eEe-e-eecCCccceeEEEeccCCceEEeccccceEEEEEeccccc--c-------------
Confidence 1111 0 000 0 0111112233 4556778888999999988876655432 1
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccc---------------
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA--------------- 245 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~--------------- 245 (1134)
....+.+|..+|...-|..+...+.+++.||.+.+|..+..++...
T Consensus 181 -------------------~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 181 -------------------FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -------------------ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 1124678999999999999999999999999999999872211100
Q ss_pred ----ce----ecc---cccC--CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc---------ccee----------
Q 001165 246 ----EF----IKI---DKEL--GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA---------SLIR---------- 293 (1134)
Q Consensus 246 ----~~----~~~---~~~~--~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~---------~~~~---------- 293 (1134)
+. .+. ..|. ...+++|++|++.-.+||+|-.+|...+|.+.+.. ....
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDW 321 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCE
Confidence 00 010 0011 13679999999999999999999999999987632 0001
Q ss_pred ---------eeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 294 ---------TVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 294 ---------~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
.+-..+|.+..-+.... +|...++|+++||||+++|+|++||.|+|||...+-|+.|+..| ++.|+
T Consensus 322 iA~g~~klgQLlVweWqsEsYVlKQQ----gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-ts~Vt 396 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESYVLKQQ----GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-TSGVT 396 (893)
T ss_pred EEEcCCccceEEEEEeeccceeeecc----ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC-CCceE
Confidence 11122233222233333 49999999999999999999999999999999999999999998 88999
Q ss_pred eeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE----EEEec-CCEEEeeecCC-cEEeeeeeeCCCe
Q 001165 365 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV----LIFSF-GKCCLNRGVSG-MTYARQVIYGEDR 435 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v----~~~s~-~k~l~S~s~d~-ti~~w~l~~~~~~ 435 (1134)
.+.|+..+ +.+.|.+ +++.||...|+.+.++... .++ ++.++ |..+..|+.|. .|.+|++.+|..
T Consensus 397 ~v~f~~~g----~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql- 470 (893)
T KOG0291|consen 397 AVQFTARG----NVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL- 470 (893)
T ss_pred EEEEEecC----CEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-
Confidence 99999998 8888877 9999999999999988653 333 56666 77777777775 478999877664
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEe
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 514 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W 514 (1134)
...+.||.+||.+++|+|+|..||+|+-|.+| +||+-+. |...... +..-.+.++..
T Consensus 471 -------------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s-~~~vEtl--~i~sdvl~vsf 528 (893)
T KOG0291|consen 471 -------------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS-SGTVETL--EIRSDVLAVSF 528 (893)
T ss_pred -------------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc-CceeeeE--eeccceeEEEE
Confidence 56788999999999999999999999999999 9998553 1111100 10011344555
Q ss_pred e--CCEEEEEEEecCCCeeEEEEEeCC-C-----------CCCc-----ceeEEEec---CCccEEEEecCCEEEEEEcC
Q 001165 515 L--GKIIVVCNYIDSSNTYELLFYPRY-H-----------LDQS-----SLLCRKSL---LAKPIVMDVYEDYILVTYRP 572 (1134)
Q Consensus 515 ~--~~~lv~~~~~~~~~~~eLrly~~~-~-----------ld~~-----~~~~~~~l---~~~~~~l~~~~d~llv~~~d 572 (1134)
. ++-+.++. -+.+|-+|+.+ . +..+ .+.....- +-..+.++.+|..++....+
T Consensus 529 rPdG~elaVaT-----ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 529 RPDGKELAVAT-----LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES 603 (893)
T ss_pred cCCCCeEEEEE-----ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc
Confidence 4 66676662 33577777763 1 1111 00000000 11235567788888888888
Q ss_pred CeEEEEEEE
Q 001165 573 FDVHIFHVK 581 (1134)
Q Consensus 573 ~~i~l~~~~ 581 (1134)
+.|++|++.
T Consensus 604 n~iCiY~v~ 612 (893)
T KOG0291|consen 604 NSICIYDVP 612 (893)
T ss_pred ccEEEEECc
Confidence 899999875
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.4e-31 Score=288.33 Aligned_cols=277 Identities=13% Similarity=0.117 Sum_probs=229.4
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEE
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ll 146 (1134)
.+++..+.||+||+.||+++.+|.++||+...-.......+|.. .+..+.|.|.. ++..++
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~---~v~~~~fhP~~----------------~~~~la 235 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS---RVGAAVFHPVD----------------SDLNLA 235 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccc---ceeeEEEccCC----------------Ccccee
Confidence 35688899999999999999999999999975422222223322 12223333210 255799
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~ 226 (1134)
+|+.||++.+|..+.+. .+ ..+.+|...|..++|+|+|++++++
T Consensus 236 t~s~Dgtvklw~~~~e~--~l----------------------------------~~l~gH~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQET--PL----------------------------------QDLEGHLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred eeccCCceeeeccCCCc--ch----------------------------------hhhhcchhhheeeeecCCCceeeec
Confidence 99999999987766542 11 1366889999999999999999999
Q ss_pred EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEE
Q 001165 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVY 306 (1134)
Q Consensus 227 ~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l 306 (1134)
+-|.+-++|++........+ -.|...+.+++|+|||.++++|+.|..-||||+. +|..+
T Consensus 280 sfD~tWRlWD~~tk~ElL~Q------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR---------------tgr~i 338 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELLLQ------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR---------------TGRCI 338 (459)
T ss_pred ccccchhhcccccchhhHhh------cccccccceeEecCCCceeeccCccchhheeecc---------------cCcEE
Confidence 99999999999765432211 1245788999999999999999999999999999 89999
Q ss_pred EEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcC-CCCCCcceEEEcc--
Q 001165 307 YTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKYEPLMSGT-- 383 (1134)
Q Consensus 307 ~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp-~~~~~~~~l~sgs-- 383 (1134)
..+.| |.++|.+|+|||+|+.|||||.|++++|||+...+++.++..| .+-|+.|.|+| .| .+++|++
T Consensus 339 m~L~g----H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~g----~fL~TasyD 409 (459)
T KOG0272|consen 339 MFLAG----HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQEG----YFLVTASYD 409 (459)
T ss_pred EEecc----cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccCC----eEEEEcccC
Confidence 98888 9999999999999999999999999999999999999999998 88999999999 34 7889988
Q ss_pred -eeEEEeCCCceEEEEecCCCccEEEE--ec-CCEEEeeecCCcEEeee
Q 001165 384 -SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 384 -~i~~W~~~~~~l~~~~~~h~~~v~~~--s~-~k~l~S~s~d~ti~~w~ 428 (1134)
++++|...+.+++..+.||.+.|+.+ ++ +..++|++.|+|+++|.
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999554 45 88899999999999995
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=4.1e-28 Score=268.99 Aligned_cols=461 Identities=12% Similarity=0.144 Sum_probs=291.8
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC----CEEEEEEEE
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKVQ 97 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d----g~l~lw~l~ 97 (1134)
-+..|||.|.++|++. .++|+||++.+. ..+-+..- +.+ -|++..++|++||++|++.+.. |.+.+||--
T Consensus 63 tVAkySPsG~yiASGD~sG~vRIWdtt~~-~hiLKnef--~v~--aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 63 TVAKYSPSGFYIASGDVSGKVRIWDTTQK-EHILKNEF--QVL--AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred EEEEeCCCceEEeecCCcCcEEEEeccCc-ceeeeeee--eec--ccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 3478999999999986 579999999642 33322221 111 4889999999999999987654 334555542
Q ss_pred ecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcc
Q 001165 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (1134)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~ 177 (1134)
..... ..+|. ..++++.|.+.. .-++++++.|+++..+ +| .++..
T Consensus 138 ~SvGe--i~GhS---r~ins~~~KpsR-----------------PfRi~T~sdDn~v~ff--eG---PPFKF-------- 182 (603)
T KOG0318|consen 138 NSVGE--ITGHS---RRINSVDFKPSR-----------------PFRIATGSDDNTVAFF--EG---PPFKF-------- 182 (603)
T ss_pred Cccce--eeccc---eeEeeeeccCCC-----------------ceEEEeccCCCeEEEe--eC---CCeee--------
Confidence 21111 11111 123333333321 3568888899988764 32 22211
Q ss_pred ccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCC
Q 001165 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG 257 (1134)
Q Consensus 178 ~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~ 257 (1134)
......|...|.++.|+|||..|+++++||++++++-...+. ...+.. .-.|.+
T Consensus 183 -----------------------k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~-~~aHkG 236 (603)
T KOG0318|consen 183 -----------------------KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELED-SDAHKG 236 (603)
T ss_pred -----------------------eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecC-CCCccc
Confidence 012446778999999999999999999999999977543321 111111 113568
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEecccccc----------------------ce------eeeeeeccCcceEEEEe
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESAS----------------------LI------RTVSLYDWGMREVYYTF 309 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~----------------------~~------~~l~l~~~~~~~~l~~l 309 (1134)
.+.+++|+||++.+++++.|.+++|||+....- +. ..+...+...++.++++
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i 316 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI 316 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee
Confidence 899999999999999999999999999975320 00 11111222234456666
Q ss_pred ecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--eeEE
Q 001165 310 CRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQ 387 (1134)
Q Consensus 310 ~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~ 387 (1134)
.| |...|++++.+|||++|.||+.||.|.=|+...+..-.-....|.+.|..++.+..+ +.+..|- ++++
T Consensus 317 ~G----HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~----~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 317 SG----HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG----ELFTIGWDDTLRV 388 (603)
T ss_pred cc----cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC----cEEEEecCCeEEE
Confidence 66 999999999999999999999999999999987654433322336677777776644 4443333 4444
Q ss_pred EeCCCc------------------------eEEEE-------ecCC----------CccEEEEec-CCEEEeeecCCcEE
Q 001165 388 WDEYGY------------------------RLYAI-------EEGS----------SERVLIFSF-GKCCLNRGVSGMTY 425 (1134)
Q Consensus 388 W~~~~~------------------------~l~~~-------~~~h----------~~~v~~~s~-~k~l~S~s~d~ti~ 425 (1134)
-+..++ -.+.. ++++ ....+++++ ++.++.|+.|+.++
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE
Confidence 433111 00111 1111 112256666 66777788888888
Q ss_pred eeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccce
Q 001165 426 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE 504 (1134)
Q Consensus 426 ~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e 504 (1134)
++.+.-++.. -......|..+|+++++||||.|||++...+.+ +||+.++.-++ +.---
T Consensus 469 vysl~g~~l~------------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~--~~w~F 528 (603)
T KOG0318|consen 469 VYSLSGDELK------------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT--NRWAF 528 (603)
T ss_pred EEEecCCccc------------------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec--ceeee
Confidence 8776543321 023566899999999999999999999999999 99999875322 11011
Q ss_pred eeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEEe-cCCEEEEEEcCCeEEEEEEE
Q 001165 505 QKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV-YEDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 505 ~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~~-~~d~llv~~~d~~i~l~~~~ 581 (1134)
+.-.+.++.|.++...++. .+-+..+.+|+.++.... +...-.-+..+-.+.- .+..++....|..|++|.+.
T Consensus 529 HtakI~~~aWsP~n~~vAT---GSlDt~Viiysv~kP~~~-i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVAT---GSLDTNVIIYSVKKPAKH-IIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeeeEEEEEeCCCceEEEe---ccccceEEEEEccChhhh-eEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 1134778999987655441 245677999988643322 2221111111222222 33445557789999999764
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.2e-31 Score=284.62 Aligned_cols=269 Identities=17% Similarity=0.096 Sum_probs=230.3
Q ss_pred eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEE
Q 001165 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1134)
Q Consensus 134 ~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~ 213 (1134)
..+.++.|++.+++|+-+|.+.+|+-+ ..... ..+.+|.+.|.+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~--~~~~~----------------------------------~~l~gH~~~v~~ 222 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVP--QCNLL----------------------------------QTLRGHTSRVGA 222 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecC--Cccee----------------------------------EEEeccccceee
Confidence 345678899999999999999875433 22111 146789999999
Q ss_pred EEEcCC--CCeEEEEEcCCeEEEEEeccCCcc-ccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccc
Q 001165 214 LELCLP--MRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS 290 (1134)
Q Consensus 214 i~fsp~--~~~la~~~sDG~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~ 290 (1134)
+.|+|. +..+|+++.||++.+|.++...+. +..+ |...+..|+|+|+|++|+++|-|.+-++||+.
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~---- 291 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG-------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLE---- 291 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhc-------chhhheeeeecCCCceeeecccccchhhcccc----
Confidence 999998 568999999999999999764332 2222 33678899999999999999999999999999
Q ss_pred ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcC
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
+++.+....| |..+|.+++|.|||..++||+-|..-+|||+.+++++-.+.+| ..+|.+++|+|
T Consensus 292 -----------tk~ElL~QEG----Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsP 355 (459)
T KOG0272|consen 292 -----------TKSELLLQEG----HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSP 355 (459)
T ss_pred -----------cchhhHhhcc----cccccceeEecCCCceeeccCccchhheeecccCcEEEEeccc-ccceeeEeECC
Confidence 5555554555 9999999999999999999999999999999999999999997 88999999999
Q ss_pred CCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCC
Q 001165 371 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 443 (1134)
Q Consensus 371 ~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~ 443 (1134)
+| -.++||+ ++++||++..+.+.+..+|.+-| +.|++ |..++|++.|+++++|.-....
T Consensus 356 NG----y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---------- 421 (459)
T KOG0272|consen 356 NG----YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---------- 421 (459)
T ss_pred Cc----eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc----------
Confidence 99 8899988 99999999999988889999988 77887 8899999999999999743322
Q ss_pred CccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 444 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 444 ~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
+..++.||...|-++++|+||++++++|.|.++ +|.
T Consensus 422 ----------~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 422 ----------PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 245788999999999999999999999999999 985
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.1e-29 Score=285.42 Aligned_cols=422 Identities=14% Similarity=0.158 Sum_probs=296.1
Q ss_pred eeEEEeecCeEEEEEcCC-eEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~-~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
-.++++||++.|.++..+ -+++|+.. . +...|+-.. .|.+++.-++|.|-|..+|+++.||.+++||+....-
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~-t----gk~irswKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLP-T----GKLIRSWKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcc-c----chHhHhHhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 347889999998888865 79999996 2 344554432 2678999999999999999999999999999987544
Q ss_pred ceecCCCCCCCcceeeEEEeeceee---cccc----------------------ccceE--EEeeeCCCeEEEEecCCcE
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQL---PFAE----------------------KGLSV--SNIVSDNKHMLLGLSDGSL 154 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~---~~~~----------------------~~~~V--~~~s~d~~~llv~t~dg~v 154 (1134)
....+++++ .+.++.|.+.... ..+. +...| .++.+|+..+++++.|..+
T Consensus 140 th~fkG~gG---vVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi 216 (775)
T KOG0319|consen 140 THSFKGHGG---VVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVI 216 (775)
T ss_pred EEEecCCCc---eEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEE
Confidence 444555443 3455555443321 1111 11122 3567888999999999988
Q ss_pred EEEecCCccc---------------------cc--eecc---------ccCCCccccc--ccc----------ccCCCcc
Q 001165 155 YSISWKGEFY---------------------GA--FELV---------HSSNDSSVAA--LSH----------HFPSNGL 190 (1134)
Q Consensus 155 ~~~~wd~~~~---------------------~~--~~~~---------~~~~~~~~i~--~i~----------~~~~~~l 190 (1134)
.+|+...... +. +.+. ..+.+..++. ..| .....++
T Consensus 217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~ 296 (775)
T KOG0319|consen 217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL 296 (775)
T ss_pred EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence 8765521100 00 0000 0000000000 000 0000000
Q ss_pred -------------------------------------------ccccCCCc--------ccccccCCCcccEEEEEEcCC
Q 001165 191 -------------------------------------------ASVDTSGA--------FVSDHKFPISSAIIWLELCLP 219 (1134)
Q Consensus 191 -------------------------------------------~s~~~~~~--------~~~~~~~~~~~~V~~i~fsp~ 219 (1134)
+-+++++. +......+|...|.+++-..+
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence 00000000 011234577788888876667
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC-CEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
|.++++++.|.++.+|.++....... .. ...-.|.+.+.+++++..+ ..+++++.|+++++|++.++......+.+.
T Consensus 377 g~llat~sKD~svilWr~~~~~~~~~-~~-a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNNNCSKSL-CV-AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred CcEEEEecCCceEEEEEecCCcchhh-hh-hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 78899999999999998843221110 00 0111245788899997754 579999999999999998622111101000
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcce
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 378 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~ 378 (1134)
.-. ....|...|+||+.+|+.+.+||||.|++.+||++...++..++.|| ..+|+++.|+|++ +.
T Consensus 455 ------~~~----t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~d----q~ 519 (775)
T KOG0319|consen 455 ------CRY----TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKND----QL 519 (775)
T ss_pred ------hhH----HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEecccc----ce
Confidence 000 11249999999999999999999999999999999999999999999 8899999999998 89
Q ss_pred EEEcc---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccc
Q 001165 379 LMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 452 (1134)
Q Consensus 379 l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~ 452 (1134)
++|++ ++++|.+.++.++.++.||+..|...+| ++.++|++.||-+++|++.+.+.
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC------------------ 581 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC------------------ 581 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh------------------
Confidence 99887 9999999999999999999999988787 89999999999999999987664
Q ss_pred ccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 453 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 453 ~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
..++-+|+..|+.++.+|++.++++||.||.+ +|.=
T Consensus 582 --~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 582 --EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred --hhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 57888999999999999999999999999999 8853
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.7e-26 Score=256.18 Aligned_cols=479 Identities=16% Similarity=0.142 Sum_probs=307.8
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhc-ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcce
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~ 103 (1134)
+.-.|-|.-|+-...+.+.+-+++++.. .-.+. +|. .++-+.+||.|.++|+|...|.||||+...... +
T Consensus 24 ig~dpkgd~ilY~nGksv~ir~i~~~~~-~~iYt-------EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-i 94 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNGKSVIIRNIDNPAS-VDIYT-------EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-I 94 (603)
T ss_pred eccCCCCCeEEEeCCCEEEEEECCCccc-eeeec-------cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-e
Confidence 3445557777777777888888875532 11121 222 456788999999999999999999999865321 2
Q ss_pred ecCCCCCCCcceeeEEEeeceeeccccccceEEE--eeeCCCeEEEEec--CCcEEEEecCCccccceeccccCCCcccc
Q 001165 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1134)
Q Consensus 104 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~--~s~d~~~llv~t~--dg~v~~~~wd~~~~~~~~~~~~~~~~~~i 179 (1134)
.-...+. + .++|.. +.+|+++|++... +.-.+.+.||.....
T Consensus 95 LKnef~v-----------------~---aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv-------------- 140 (603)
T KOG0318|consen 95 LKNEFQV-----------------L---AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV-------------- 140 (603)
T ss_pred eeeeeee-----------------c---ccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc--------------
Confidence 1111111 1 123433 3345566555432 124566678754211
Q ss_pred ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCCC
Q 001165 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD 258 (1134)
Q Consensus 180 ~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1134)
..+.+|...|++++|-|.-- .++++++|+.+.++.-..+.-+.... .|..=
T Consensus 141 ----------------------Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r------~HskF 192 (603)
T KOG0318|consen 141 ----------------------GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR------EHSKF 192 (603)
T ss_pred ----------------------ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc------ccccc
Confidence 03568889999999988764 68889999999997655443322111 23355
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
+.|+.|||||..+|+.+.||+|.+||-. +|+.+..+.. ..+|+|.|.+++||||++.+++++.|
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGk---------------tge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGK---------------TGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCC---------------CccEEEEecC-CCCccccEEEEEECCCCceEEEecCC
Confidence 7899999999999999999999999988 8888888773 45699999999999999999999999
Q ss_pred CcEEEEecCCCeeEEEec-------------------------------------------cCCCCceeeeEEcCCCCCC
Q 001165 339 RGLTVWSVSGCRLMSTIR-------------------------------------------QISLSSISSPIVKPNQDCK 375 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~-------------------------------------------~h~~~~V~sv~~sp~~~~~ 375 (1134)
.+++|||+.+..++.++. || ..+|+++..+|++
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~--- 332 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDG--- 332 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc-ccceeEEEEcCCC---
Confidence 999999998766655443 33 4578899999998
Q ss_pred cceEEEcc---eeEEEeCCCceEEEEe-cCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCCCe-----------EEE
Q 001165 376 YEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDR-----------LLV 438 (1134)
Q Consensus 376 ~~~l~sgs---~i~~W~~~~~~l~~~~-~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~-----------l~l 438 (1134)
..+.||+ .+.-|+...+..-... ++|.+.|..+.. ...+.|.+.|.+++.-++...... ..+
T Consensus 333 -~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 333 -KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred -CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 8899988 8999999887665443 679999987776 468889999999998765332110 000
Q ss_pred eecCCCccc---ccccccccee-----eccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEE
Q 001165 439 VQSEDTDEL---KILHLNLPVS-----YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS 509 (1134)
Q Consensus 439 ~~g~~~~~~---~w~~~~~~~~-----~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v 509 (1134)
....+.... .-.++.+.+. ...-.....++|++|+|+.+|+||.||.+ +|.+..+.-+-+... .+..-.+
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-~~h~a~i 490 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-LEHRAAI 490 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-ecccCCc
Confidence 001110000 0111111110 00112235689999999999999999999 999987643322111 1111234
Q ss_pred EEEEee--CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEec-CCccEEEEecCCEEEE--EEcCCeEEEEEEEEec
Q 001165 510 KGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL-LAKPIVMDVYEDYILV--TYRPFDVHIFHVKLFG 584 (1134)
Q Consensus 510 ~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l-~~~~~~l~~~~d~llv--~~~d~~i~l~~~~~~~ 584 (1134)
+.+.+. +.++++| +...++.+|++..-....- ++.+ .+.+..+.-.-+..++ ..-|-.|.+|+++ .
T Consensus 491 T~vaySpd~~yla~~-----Da~rkvv~yd~~s~~~~~~--~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~--k 561 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAG-----DASRKVVLYDVASREVKTN--RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK--K 561 (603)
T ss_pred eEEEECCCCcEEEEe-----ccCCcEEEEEcccCceecc--eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc--C
Confidence 555554 4567776 6678899999962111111 1222 2344555544444444 4445666677664 2
Q ss_pred ccCCCCCCeEEEEEEEEEEeeccccCCceeEEccCC
Q 001165 585 ELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQ 620 (1134)
Q Consensus 585 ~~~~~~~~~~~l~~~~~i~~~~~~~~p~~v~~i~~~ 620 (1134)
. . +.|.+. -.||-+|+.+-|.
T Consensus 562 P---~----------~~i~ik--nAH~~gVn~v~wl 582 (603)
T KOG0318|consen 562 P---A----------KHIIIK--NAHLGGVNSVAWL 582 (603)
T ss_pred h---h----------hheEec--cccccCceeEEEe
Confidence 1 1 112222 2477778888774
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=3e-26 Score=238.49 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=230.2
Q ss_pred eeccccccceEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCccccc
Q 001165 125 QLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (1134)
Q Consensus 125 ~~~~~~~~~~V~~--~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~ 202 (1134)
+..+.++.+.|.+ +++|.++|++++.||.+.+ ||.-+..+. ..+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv--WDs~TtnK~------------haip------------------- 94 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV--WDSFTTNKV------------HAIP------------------- 94 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEE--EEcccccce------------eEEe-------------------
Confidence 3456677777766 4678899999999999876 665432221 1111
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
-....|..++|+|.++.+|.++-|....+++++..+.........+.-.|.+-+.|+.|-+|+ .|++|+.|.++.+
T Consensus 95 ---l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCal 170 (343)
T KOG0286|consen 95 ---LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCAL 170 (343)
T ss_pred ---cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEE
Confidence 235678999999999999999999999998886432211111111111245678899998865 6789999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
||++ +|+.+..+.| |+|.|.+++++| +++.++||+.|++.+|||+..+.+.+++.+| .+
T Consensus 171 WDie---------------~g~~~~~f~G----H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-es 230 (343)
T KOG0286|consen 171 WDIE---------------TGQQTQVFHG----HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ES 230 (343)
T ss_pred EEcc---------------cceEEEEecC----CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-cc
Confidence 9999 8999999888 999999999999 9999999999999999999999999999998 78
Q ss_pred ceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC--CccE--EEEec-CCEEEeeecCCcEEeeeeeeCC
Q 001165 362 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h--~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
-|+++.|.|+| ..+++|+ +.+++|++..+.+.+.... ..+| +.|+. |+.+.+|..|.++.+||.+.++
T Consensus 231 DINsv~ffP~G----~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 231 DINSVRFFPSG----DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccceEEEccCC----CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 89999999999 8999998 9999999998877776432 1234 66666 9999999999999999988776
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
. ...+.+|...|.++..+|||.-+++|+-|.++ +|.
T Consensus 307 ~--------------------vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 R--------------------VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred e--------------------EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 5 45677999999999999999999999999988 884
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=6.1e-27 Score=272.46 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=209.8
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc---------c---------c-------eecccccCCCCCeE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL---------A---------E-------FIKIDKELGSGDAV 260 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~---------~---------~-------~~~~~~~~~~~~~~ 260 (1134)
.....+++.+|++++.++|.++.|-.|++|.+.....+. . . +....-..|.++|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 445678899999999999999999999999986311000 0 0 00000112567899
Q ss_pred EEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCc
Q 001165 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 340 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~ 340 (1134)
.++|+|+.++|++++.|++||+|.++ +-..+-..+| |..||.++.|+|-|.++|||+.|++
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~---------------t~s~~V~y~G----H~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLD---------------TWSCLVIYKG----HLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eeeecccccceeeccCCcceeeeecc---------------cceeEEEecC----CCcceeeEEecCCceEEEecCCCce
Confidence 99999999999999999999999999 5555555555 9999999999999999999999999
Q ss_pred EEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCE
Q 001165 341 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKC 414 (1134)
Q Consensus 341 I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~ 414 (1134)
.++|+.......+.+.+| .+.|.++.|+|+. .++++|+ ++++||..+|..+.++.||.++| ++|+| |+.
T Consensus 517 ArLWs~d~~~PlRifagh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred eeeeecccCCchhhhccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 999999888888888888 8899999999999 9999998 99999999999999999999999 67777 999
Q ss_pred EEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 415 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 415 l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
++||+.|+.|++||+..+.. ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus 592 LaSg~ed~~I~iWDl~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EeecccCCcEEEEEcCCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999877654 56788999999999999999999999999999 999864
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=2e-25 Score=231.37 Aligned_cols=287 Identities=15% Similarity=0.206 Sum_probs=226.3
Q ss_pred ccCCCcccEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.+.+|...|+.++..+. .+.+..++.|-.+.+|.+...+.+........ ..|...+..++.++||++..+|+.||++|
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccCCceEEeccccceEE
Confidence 46789999999999887 46888899999999999876533221111100 01345678899999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
+||+. +|+..+.|.| |+..|.+++||||.+.++||+.|++|++|++-|.+.....++.+.+
T Consensus 89 lWDl~---------------~g~~t~~f~G----H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 89 LWDLA---------------TGESTRRFVG----HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EEEec---------------CCcEEEEEEe----cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 99999 8888899998 9999999999999999999999999999999886654444433378
Q ss_pred ceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 362 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.|+++.|+|+.. ...+++++ ++++||.++.++.....||+..+ +.++| |..+++|+.||...+||+..++.
T Consensus 150 WVscvrfsP~~~--~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~- 226 (315)
T KOG0279|consen 150 WVSCVRFSPNES--NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN- 226 (315)
T ss_pred cEEEEEEcCCCC--CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence 899999999952 16788887 99999999999999999999888 77888 99999999999999999987765
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCcEE------EeCCccceeeeEE
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQS 509 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk------~F~~~~~e~~~~v 509 (1134)
..+++|+.+|++++|||+.-.|+.|...+..+||..+++-- ..++...-.+..|
T Consensus 227 --------------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 227 --------------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred --------------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 24678999999999999999999888777559999987521 1122112223457
Q ss_pred EEEEeeC--CEEEEEEEecCCCeeEEEEEe
Q 001165 510 KGLLWLG--KIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 510 ~gl~W~~--~~lv~~~~~~~~~~~eLrly~ 537 (1134)
..+.|.+ ..+.++ |. +.-||+|.
T Consensus 287 lslaws~dG~tLf~g-~t----d~~irv~q 311 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAG-YT----DNVIRVWQ 311 (315)
T ss_pred EEEEEcCCCcEEEee-ec----CCcEEEEE
Confidence 7899984 455554 43 34566663
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6e-26 Score=260.99 Aligned_cols=318 Identities=15% Similarity=0.205 Sum_probs=249.3
Q ss_pred eEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEE-EcCCceEEEEEeCCCEEEEEEEEecCcc
Q 001165 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAV-WSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1134)
Q Consensus 24 iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~-wSPDg~~Lav~t~dg~l~lw~l~~~~~~ 102 (1134)
...+..++++|++.++.++.++|.+ ... +.+ +-..-++++.+++ |.|+.+.+|++|+.+.+|+|++.+..-.
T Consensus 287 ~~~~~~~~~~l~vtaeQnl~l~d~~-~l~-i~k-----~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ 359 (775)
T KOG0319|consen 287 LLAIESMSQLLLVTAEQNLFLYDED-ELT-IVK-----QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ 359 (775)
T ss_pred ceeccccCceEEEEccceEEEEEcc-ccE-Eeh-----hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE
Confidence 3666778889988889999999886 322 111 1122256777777 5899999999999999999987654333
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceEEEee--eCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s--~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
++ .+++..|.++. .+|..+++|+.|.++++|..+.......
T Consensus 360 ii------------------------~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~------------- 402 (775)
T KOG0319|consen 360 II------------------------PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL------------- 402 (775)
T ss_pred EE------------------------eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh-------------
Confidence 22 22333454544 4567899999999999887632211110
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccc-ee--cccccCCC
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAE-FI--KIDKELGS 256 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~-~~--~~~~~~~~ 256 (1134)
......+|...|.+++++..+ .+|++++.|+++.+|.+.+..+.... .. ......|.
T Consensus 403 -------------------~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 403 -------------------CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred -------------------hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 001245788899999997776 68999999999999999762221110 00 01112356
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
.+++||+++|+.++||+|+.|.+.+||+++ ......++.| |+..|.||.|+|..+.+||+|
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le---------------~~~l~~vLsG----H~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLE---------------QLRLLGVLSG----HTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred ccccceEecCCCceEEecccccceeeeccc---------------CceEEEEeeC----CccceEEEEeccccceeEecc
Confidence 899999999999999999999999999999 6778888888 999999999999999999999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec--
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-- 411 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-- 411 (1134)
.|+||+||++.+..|+.|+.|| ...|.-+.|-.++ ..++|++ -+++|+..++.|.+...+|.++||+++-
T Consensus 525 gD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~----~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNG----KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred CCceEEEEEeccceeeeeecCc-cceeEeeeeeeCC----cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 9999999999999999999998 7889999998888 7788765 8999999999999999999999999887
Q ss_pred -CCEEEeeecCCcEEeee
Q 001165 412 -GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~ 428 (1134)
...++||+.|+.+.+|.
T Consensus 600 ~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 600 LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEecCCCeEEEEee
Confidence 55778999999999996
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.1e-26 Score=270.25 Aligned_cols=247 Identities=17% Similarity=0.206 Sum_probs=198.2
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|.++|....|+|+.+++++++.|+++++|.+....... .. ..|..++.+|.|+|.|-++|+|+.|++.++
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y---~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IY---KGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---Ee---cCCCcceeeEEecCCceEEEecCCCceeee
Confidence 367999999999999999999999999999999987543211 11 124577889999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCc
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
|..+ ...+++.+.| |.+.|.|++|.|++.++|+||.|++||+||+.+|..++.+.|| .++
T Consensus 520 Ws~d---------------~~~PlRifag----hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~ 579 (707)
T KOG0263|consen 520 WSTD---------------HNKPLRIFAG----HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGP 579 (707)
T ss_pred eecc---------------cCCchhhhcc----cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCc
Confidence 9998 5666777776 9999999999999999999999999999999999999999998 889
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeE
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l 436 (1134)
|.+++|||+| .+++||+ .+++||..+++++....+|++.|..++| |..++++|.|.++++||+.+.....
T Consensus 580 V~al~~Sp~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~ 655 (707)
T KOG0263|consen 580 VTALAFSPCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELL 655 (707)
T ss_pred eEEEEEcCCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccc
Confidence 9999999999 9999998 8999999999999999999988855555 8999999999999999976543320
Q ss_pred EE-----eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEE
Q 001165 437 LV-----VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 480 (1134)
Q Consensus 437 ~l-----~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsg 480 (1134)
.+ ..++.++... ....+..+|..-+.||..+.|..-.-.|++|
T Consensus 656 ~~~~~~~~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 656 NLGHISTSNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 00 0000000000 1111234566667789999998655444444
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=3.4e-25 Score=230.68 Aligned_cols=285 Identities=16% Similarity=0.144 Sum_probs=221.7
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|...|.++.|++|.+.+++++-||++.+|+.-.... ...+. ....-|..+||+|.|+++|.|+-|....|
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--~haip----l~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--VHAIP----LPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--eeEEe----cCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 5779999999999999999999999999999998743221 11221 12356789999999999999999999999
Q ss_pred Eeccccc-cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 283 YDLAESA-SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 283 wd~~~~~-~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
|++.... .. .-...+.+.+ |++-+.|+.|-+|+ .|++|+.|.+..+||+++++.+..+.+| ..
T Consensus 124 y~ls~~d~~g----------~~~v~r~l~g----HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~g 187 (343)
T KOG0286|consen 124 YPLSTRDAEG----------NVRVSRELAG----HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TG 187 (343)
T ss_pred Eecccccccc----------cceeeeeecC----ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-cc
Confidence 9998210 00 1123344555 99999999998865 5778889999999999999999999998 78
Q ss_pred ceeeeEEcC-CCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCC
Q 001165 362 SISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED 434 (1134)
Q Consensus 362 ~V~sv~~sp-~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~ 434 (1134)
-|.++.++| ++ +.++||+ +.++||.+.+.+...+.+|+..| +.|-| |..++||+.|++.+++|+....+
T Consensus 188 DV~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 188 DVMSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred cEEEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 899999999 55 8899988 89999999999999999999999 56666 99999999999999999876443
Q ss_pred eEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEE
Q 001165 435 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLL 513 (1134)
Q Consensus 435 ~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~ 513 (1134)
+.++++ ..-+.+|++++||..|++|.+|..|..+ +||.-.++-- -.-..||+.+.|.++.
T Consensus 264 -~a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v-g~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 264 -LAVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV-GVLAGHENRVSCLGVS 324 (343)
T ss_pred -Eeeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceE-EEeeccCCeeEEEEEC
Confidence 333321 1234589999999999999999999999 9998766421 1112466655555554
Q ss_pred eeCCEEEEEEEecCCCeeEEEEEe
Q 001165 514 WLGKIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 514 W~~~~lv~~~~~~~~~~~eLrly~ 537 (1134)
-.+--+.++ +-+..||+|.
T Consensus 325 ~DG~av~Tg-----SWDs~lriW~ 343 (343)
T KOG0286|consen 325 PDGMAVATG-----SWDSTLRIWA 343 (343)
T ss_pred CCCcEEEec-----chhHheeecC
Confidence 444333333 5567788873
No 19
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-23 Score=241.09 Aligned_cols=268 Identities=11% Similarity=0.132 Sum_probs=220.0
Q ss_pred EeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEE
Q 001165 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (1134)
Q Consensus 137 ~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~f 216 (1134)
+|.|..--|+++..+|.|+.|+..-. .-. ..+..|+++|..+.|
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~--tli----------------------------------~rFdeHdGpVRgv~F 59 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMG--TLI----------------------------------DRFDEHDGPVRGVDF 59 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhh--hHH----------------------------------hhhhccCCccceeee
Confidence 55666778999999999997543321 111 124589999999999
Q ss_pred cCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 217 CLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 217 sp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
+|++.+|++++.|-.|.+|+.....- ....+ |.+-+..+.|++...+|.++|.|.||||||..
T Consensus 60 H~~qplFVSGGDDykIkVWnYk~rrclftL~G-------HlDYVRt~~FHheyPWIlSASDDQTIrIWNwq--------- 123 (1202)
T KOG0292|consen 60 HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-------HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ--------- 123 (1202)
T ss_pred cCCCCeEEecCCccEEEEEecccceehhhhcc-------ccceeEEeeccCCCceEEEccCCCeEEEEecc---------
Confidence 99999999999999999999864321 11112 34668899999999999999999999999999
Q ss_pred eeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe-------------------------
Q 001165 296 SLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR------------------------- 350 (1134)
Q Consensus 296 ~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~------------------------- 350 (1134)
+++++..+.| |..-|.|-+|.|....++|||-|.+|||||+.|-+
T Consensus 124 ------sr~~iavltG----HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~ 193 (1202)
T KOG0292|consen 124 ------SRKCIAVLTG----HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ 193 (1202)
T ss_pred ------CCceEEEEec----CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC
Confidence 8999999998 99999999999999999999999999999985411
Q ss_pred ----eEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEE--ecCCCccE--EEEec-CCEEEee
Q 001165 351 ----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI--EEGSSERV--LIFSF-GKCCLNR 418 (1134)
Q Consensus 351 ----l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~--~~~h~~~v--~~~s~-~k~l~S~ 418 (1134)
....++|| ..+|+.++|+|.- ..++||+ .+++|-.+..+.|-+ ..||.+.| +.|+| ...++|.
T Consensus 194 ~DaVVK~VLEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 194 TDAVVKHVLEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred cCeeeeeeeccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence 11335566 7899999999987 8899998 899999988777765 46899998 66777 7889999
Q ss_pred ecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEcc
Q 001165 419 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 491 (1134)
Q Consensus 419 s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~ 491 (1134)
|.|+++++||+..... ..++...+...+.++..|.++.+|+|-+.|.++|.+.
T Consensus 269 sEDksirVwDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred CCCccEEEEecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 9999999999754333 4667778888999999999999998888888888775
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=4.5e-25 Score=242.38 Aligned_cols=330 Identities=16% Similarity=0.159 Sum_probs=252.3
Q ss_pred hhcceeEEEEcCCce-EEEEEeCCCEEEEEEEEecCcce----ecCCCCCCCcceeeEEEeeceeeccccccceEEEeee
Q 001165 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSI----QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~-~Lav~t~dg~l~lw~l~~~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~ 140 (1134)
+..++...+|+|-.. .+|+++.+-+.++|++....... ..+ |. + ...++-....++.+..++..
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-h~--------~--~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-HC--------I--REGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-hh--------h--hhhcccCCccCCcceEEecC
Confidence 345789999999877 89999999999999997421110 000 00 0 00011111223444556667
Q ss_pred CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC
Q 001165 141 DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (1134)
Q Consensus 141 d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~ 220 (1134)
+|..|++|..+|.+++|.-+|.... .+..|+++|.++.|+..|
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~-------------------------------------tl~~HkgPI~slKWnk~G 288 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLIS-------------------------------------TLGQHKGPIFSLKWNKKG 288 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhh-------------------------------------hhhccCCceEEEEEcCCC
Confidence 7999999999999998766654321 245789999999999999
Q ss_pred CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeecc
Q 001165 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~ 300 (1134)
+++++++.||++.+|+.-.+.-.+.-. .+...+..|.|-.+ .-+|+.+.||.|+||.++
T Consensus 289 ~yilS~~vD~ttilwd~~~g~~~q~f~------~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~-------------- 347 (524)
T KOG0273|consen 289 TYILSGGVDGTTILWDAHTGTVKQQFE------FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVG-------------- 347 (524)
T ss_pred CEEEeccCCccEEEEeccCceEEEeee------eccCCccceEEecC-ceEeecCCCceEEEEEec--------------
Confidence 999999999999999986543322111 12233344555433 458899999999999998
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCC-----C
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC-----K 375 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~-----~ 375 (1134)
...+..++.| |.++|.+|.|.|.|.+|+|+++|+|++||+.........+..| ..+|..+.++|.++- .
T Consensus 348 -~~~P~~t~~G----H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 348 -EDRPVKTFIG----HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred -CCCcceeeec----ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcC
Confidence 5667778777 9999999999999999999999999999999887888888888 678999999999861 2
Q ss_pred cceEEEcc---eeEEEeCCCceEEEEecCCCccEEE--Eec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccc
Q 001165 376 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 449 (1134)
Q Consensus 376 ~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~--~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w 449 (1134)
..++++++ ++++||+..+.++..+..|+.+|++ |++ ++.+++|+.||.+++|+...+..
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l--------------- 486 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL--------------- 486 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe---------------
Confidence 23566655 9999999999999999999999955 555 99999999999999999876654
Q ss_pred cccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 450 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 450 ~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
...|.+. ..|..++|+.+|.+|.++-.||.+ +-|++
T Consensus 487 -----~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 487 -----VKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -----eEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 3445444 459999999999999999999998 77763
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-24 Score=224.82 Aligned_cols=277 Identities=16% Similarity=0.180 Sum_probs=216.8
Q ss_pred CCCCeEEEEECCC-CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 255 GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 255 ~~~~~~~va~spd-g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
|.+.++.++..++ ...+.+++.|.++.+|++... ++..|.+.+.++| |...|..+..|+||++..
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d----------d~~~G~~~r~~~G----HsH~v~dv~~s~dg~~al 79 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD----------DIKYGVPVRRLTG----HSHFVSDVVLSSDGNFAL 79 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccC----------ccccCceeeeeec----cceEecceEEccCCceEE
Confidence 4578899999887 568889999999999999733 1126778888888 999999999999999999
Q ss_pred EEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC-CccE--E
Q 001165 334 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERV--L 407 (1134)
Q Consensus 334 sg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h-~~~v--~ 407 (1134)
|++.|+++++||+.+++..+.|.+| ...|.+++|+||+ ..++||+ ++++|+.-+...+....+. .+-| +
T Consensus 80 S~swD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscv 154 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCV 154 (315)
T ss_pred eccccceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEE
Confidence 9999999999999999999999998 6789999999998 8999999 9999999887666665443 5666 6
Q ss_pred EEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 408 IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 408 ~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
.|+| ...++++|.|+++++||+.+-+. ...+.+|+..++.+++||||...|+||+||
T Consensus 155 rfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 155 RFSPNESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EEcCCCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCc
Confidence 7777 34789999999999999865443 578899999999999999999999999999
Q ss_pred eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEe--c------CCc
Q 001165 485 LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS--L------LAK 555 (1134)
Q Consensus 485 ~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~--l------~~~ 555 (1134)
.+ +||++.++.-. .- +....|..++..++-+..|.... ..|++|+.+ ....+..+. + .+.
T Consensus 215 ~~~LwdL~~~k~ly-sl---~a~~~v~sl~fspnrywL~~at~----~sIkIwdl~---~~~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLY-SL---EAFDIVNSLCFSPNRYWLCAATA----TSIKIWDLE---SKAVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred eEEEEEccCCceeE-ec---cCCCeEeeEEecCCceeEeeccC----CceEEEecc---chhhhhhccccccccccccCC
Confidence 99 99999987422 11 22234668888888776663332 349999884 111111111 1 113
Q ss_pred cEEEE----ecCCEEEEEEcCCeEEEEEEE
Q 001165 556 PIVMD----VYEDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 556 ~~~l~----~~~d~llv~~~d~~i~l~~~~ 581 (1134)
|..++ ..|..|+..+.|+.|++|.+.
T Consensus 284 ~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 284 PICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 44333 346678888889999999874
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.4e-24 Score=218.48 Aligned_cols=277 Identities=12% Similarity=0.137 Sum_probs=213.3
Q ss_pred CCCeEEEEECCC-CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 256 SGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 256 ~~~~~~va~spd-g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
.+.+-.+||||- |.+||+|+.|..||+|+...+.. -.+...+ ..+|+..|.+++|||+|++||+
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s------------~~ck~vl---d~~hkrsVRsvAwsp~g~~La~ 78 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS------------WTCKTVL---DDGHKRSVRSVAWSPHGRYLAS 78 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc------------EEEEEec---cccchheeeeeeecCCCcEEEE
Confidence 356889999998 99999999999999999883111 1111121 2259999999999999999999
Q ss_pred EECCCcEEEEecCCC--eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC---CceEEEEecCCCccE
Q 001165 335 GWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV 406 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~--~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~---~~~l~~~~~~h~~~v 406 (1134)
|+.|.++.||.-.++ .++.+++|| .++|.+++|+++| .+|++++ ++-+|... .+++..++++|+..|
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 999999999987654 578889998 8899999999999 9999998 77788775 468899999998887
Q ss_pred --EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCC
Q 001165 407 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 483 (1134)
Q Consensus 407 --~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~d 483 (1134)
+.++| ...++|+|.|+||++|.-..+++ | .+.+++.+|+..|.+++|+++|..|++++.|
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd--------------W---~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD--------------W---ECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCCC--------------e---eEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 77888 67889999999999998544333 2 2356788999999999999999999999999
Q ss_pred CeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC-CCCCcce--e----EEEecCCc
Q 001165 484 GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSL--L----CRKSLLAK 555 (1134)
Q Consensus 484 G~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~-~ld~~~~--~----~~~~l~~~ 555 (1134)
+++ +|-..+ .....+...+..+.|.++.|..+ .++..||+|... ..+...+ + ..++..-.
T Consensus 217 ~tv~Iw~~~~-------~~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN 284 (312)
T KOG0645|consen 217 GTVSIWRLYT-------DLSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN 284 (312)
T ss_pred cceEeeeecc-------CcchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence 999 987543 23334444567789996666655 567889999885 3343221 1 11223334
Q ss_pred cEEEEec-CCEEEEEEcCCeEEEEEEE
Q 001165 556 PIVMDVY-EDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 556 ~~~l~~~-~d~llv~~~d~~i~l~~~~ 581 (1134)
.+..++. .+.|+....||.+.+|+++
T Consensus 285 sV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEEEcCCCCCceeecCCCceEEEEEec
Confidence 5566664 4556667789999999875
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=1.8e-25 Score=241.59 Aligned_cols=272 Identities=14% Similarity=0.184 Sum_probs=226.0
Q ss_pred eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEE
Q 001165 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1134)
Q Consensus 134 ~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~ 213 (1134)
.+..+.++|.+|++|+..|.+.+ |++... .+ ...+..|++.|.+
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtL--WNg~~f-nF---------------------------------EtilQaHDs~Vr~ 143 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTL--WNGTSF-NF---------------------------------ETILQAHDSPVRT 143 (464)
T ss_pred eeEEEcCCCceeEeecccccEEE--ecCcee-eH---------------------------------HHHhhhhccccee
Confidence 35678899999999999999875 776421 11 0135689999999
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccccee
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~ 293 (1134)
|.|++++..++++..+|.|..|+.+-...+..+.+ +...|.|+||||+...+++++.||+|+|||..
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ah------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~------- 210 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAH------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR------- 210 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhhHHhhHh------hhhhhheeccCCCCceeEEecCCCeEEEEecc-------
Confidence 99999999999999999999998865443322222 23678999999999999999999999999988
Q ss_pred eeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCC
Q 001165 294 TVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 373 (1134)
Q Consensus 294 ~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~ 373 (1134)
..+..+.+.| |.-.|+|++|.|.-..+||||+|..|++||..++.+++++.+| .+.|.++.|+|++
T Consensus 211 --------~~kee~vL~G----HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~n~- 276 (464)
T KOG0284|consen 211 --------MPKEERVLRG----HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNPNG- 276 (464)
T ss_pred --------CCchhheecc----CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcCCC-
Confidence 4555555566 9999999999999999999999999999999999999999988 7899999999999
Q ss_pred CCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEE--ec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcc
Q 001165 374 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE 446 (1134)
Q Consensus 374 ~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~--s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~ 446 (1134)
+.|++++ .++++|+++-+-+...++|...+..+ +| -..+.+|+.||.+..|.+...+.
T Consensus 277 ---N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p------------ 341 (464)
T KOG0284|consen 277 ---NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP------------ 341 (464)
T ss_pred ---CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc------------
Confidence 9999998 88999998766677778999888555 66 45677899999999998753222
Q ss_pred ccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 447 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 447 ~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
++..-.+|...|+++++.|-|..||+|+.|.++ .|.-
T Consensus 342 -------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 342 -------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred -------ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 133334788899999999999999999999999 8864
No 24
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.8e-22 Score=230.57 Aligned_cols=277 Identities=15% Similarity=0.196 Sum_probs=220.1
Q ss_pred cccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 202 ~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
....+|...|.++++|.+...++++ +.+.+.+|+.... +++.. ...+.+.|..|-|.++++++|..+|.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~-----kciRT---i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTL-----KCIRT---ITCGYILASKFVPGDRYIVLGTKNGELQ 437 (888)
T ss_pred eeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCc-----ceeEE---eccccEEEEEecCCCceEEEeccCCceE
Confidence 4556899999999999998877776 4678999988632 23322 2346788999999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC------CCe-eE--
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS------GCR-LM-- 352 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~------~~~-l~-- 352 (1134)
+||+. +...+.+.+. |.|.+.+++.+|||+.+++||.|.+|++||.. |.+ -+
T Consensus 438 vfdla---------------S~~l~Eti~A----HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 438 VFDLA---------------SASLVETIRA----HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EEEee---------------hhhhhhhhhc----cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 99998 5666655554 99999999999999999999999999999962 111 11
Q ss_pred ----EEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCC
Q 001165 353 ----STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG 422 (1134)
Q Consensus 353 ----~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ 422 (1134)
.+++- .+.|.++.+|||+ .+++-|- +++++-+++-+.+..+.||.-+| +.++| ++.++|+|.|.
T Consensus 499 l~~~rtLel--~ddvL~v~~Spdg----k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 499 LKHTRTLEL--EDDVLCVSVSPDG----KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred eccceEEec--cccEEEEEEcCCC----cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 12221 3578999999999 8887665 99999999999999999999999 55666 99999999999
Q ss_pred cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCC-
Q 001165 423 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD- 500 (1134)
Q Consensus 423 ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~- 500 (1134)
++++|-+.-|+. ...+.+|...|.++.|-|+...+.++|.||.+ -||-.. ...+..
T Consensus 573 nVKiWGLdFGDC--------------------HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L 630 (888)
T KOG0306|consen 573 NVKIWGLDFGDC--------------------HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKL 630 (888)
T ss_pred ceEEeccccchh--------------------hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheee
Confidence 999999877765 56788999999999999999999999999999 998642 222221
Q ss_pred ccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 501 ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 501 ~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
..|..++-|-.+.-.|++++.| +.++.||+|.+.
T Consensus 631 ~~H~~ev~cLav~~~G~~vvs~-----shD~sIRlwE~t 664 (888)
T KOG0306|consen 631 DGHHSEVWCLAVSPNGSFVVSS-----SHDKSIRLWERT 664 (888)
T ss_pred ccchheeeeeEEcCCCCeEEec-----cCCceeEeeecc
Confidence 1233334455666677888887 667899999884
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=7.3e-23 Score=208.89 Aligned_cols=290 Identities=13% Similarity=0.187 Sum_probs=214.9
Q ss_pred eEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCC
Q 001165 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (1134)
Q Consensus 32 ~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~ 110 (1134)
-+||+++ |-||++|.+. .+. ..|+.+- ..+.+..++..||+++||+++.. .||+||+......
T Consensus 11 viLvsA~YDhTIRfWqa~-tG~----C~rTiqh--~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-TGI----CSRTIQH--PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------- 74 (311)
T ss_pred eEEEeccCcceeeeeehh-cCe----EEEEEec--CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC--------
Confidence 4688877 6799999997 332 2333211 13568899999999999998875 6999999765310
Q ss_pred CCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCcc
Q 001165 111 SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGL 190 (1134)
Q Consensus 111 ~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l 190 (1134)
++.+. . ...+...+..|.+||.-+++|+.||++.+|+... ....
T Consensus 75 ---Pv~t~--e------~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~q----------------------- 118 (311)
T KOG0315|consen 75 ---PVATF--E------GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQ----------------------- 118 (311)
T ss_pred ---ceeEE--e------ccCCceEEEEEeecCeEEEecCCCceEEEEeccC--cccc-----------------------
Confidence 11111 0 1112334567888999999999999999854332 1111
Q ss_pred ccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCE
Q 001165 191 ASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQI 270 (1134)
Q Consensus 191 ~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~l 270 (1134)
-...+.++|+++...|...-++++..+|.|++|++....-. ....++ ....+.++++.|||+.
T Consensus 119 ------------R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~--~~liPe---~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 119 ------------RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT--HELIPE---DDTSIQSLTVMPDGSM 181 (311)
T ss_pred ------------hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc--cccCCC---CCcceeeEEEcCCCcE
Confidence 12355689999999999999999999999999998542110 011111 1256789999999999
Q ss_pred EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC-
Q 001165 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC- 349 (1134)
Q Consensus 271 lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~- 349 (1134)
++.+...|...+|++-......+. +++..++. |.+-+..+.+|||+++||++|.|.+++||++.+-
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l---------~P~~k~~a----h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASEL---------EPVHKFQA----HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEecCCccEEEEEccCCCccccc---------eEhhheec----ccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 999999999999999743222211 22333444 9999999999999999999999999999999887
Q ss_pred eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEE
Q 001165 350 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI 408 (1134)
Q Consensus 350 ~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~ 408 (1134)
++...+.+| ...|+.++||.++ +++++|+ .+++|++..++.+....||-...++
T Consensus 249 kle~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 249 KLELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred eeEEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 556667777 7899999999999 9999988 8999999999988888887655433
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=249.01 Aligned_cols=275 Identities=17% Similarity=0.212 Sum_probs=225.5
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
...|+++|+.++.++.++.+..|.+..... .. ...+.+|...|.++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~---------------------------------~~~l~~h~~~v~~~ 209 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-NL---------------------------------LRELSGHTRGVSDV 209 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc-hh---------------------------------hccccccccceeee
Confidence 346788999988898999998876532211 01 01235788999999
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceee
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~ 294 (1134)
.|+|++..+++++.|+++++|++..... ....+. .|...++|++|+|+++++++|+.|++|+|||+.
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~-~~~~l~----gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-------- 276 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGR-NLKTLK----GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-------- 276 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCe-EEEEec----CCCCceEEEEecCCCCEEEEecCCCcEEEEecc--------
Confidence 9999999999999999999999932211 111111 245789999999999999999999999999999
Q ss_pred eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe--eEEEeccCCCC-ceeeeEEcCC
Q 001165 295 VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPN 371 (1134)
Q Consensus 295 l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~--l~~tl~~h~~~-~V~sv~~sp~ 371 (1134)
++++.+.+.+ |.++|++++|++||+.|++++.||.|+|||+.++. +..++.++... .++++.|+|+
T Consensus 277 -------~~~~~~~l~~----hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~ 345 (456)
T KOG0266|consen 277 -------TGECVRKLKG----HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN 345 (456)
T ss_pred -------CCeEEEeeec----cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC
Confidence 8899999988 99999999999999999999999999999999988 56777776444 6999999999
Q ss_pred CCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE---EE--Eec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecC
Q 001165 372 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---LI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 442 (1134)
Q Consensus 372 ~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v---~~--~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~ 442 (1134)
+ .+++++. .+++|++..+++.....+|...+ .. +.. ++.+++++.|+.+.+|++..+..
T Consensus 346 ~----~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-------- 413 (456)
T KOG0266|consen 346 G----KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI-------- 413 (456)
T ss_pred C----cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch--------
Confidence 9 8888776 89999999999988888887753 12 122 88999999999999999766443
Q ss_pred CCccccccccccceeeccC-CCceEEEEEcCCCCEEEEEe--CCCeE-EEEcc
Q 001165 443 DTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 491 (1134)
Q Consensus 443 ~~~~~~w~~~~~~~~~~~h-~~~V~~va~SpdG~~LAsgg--~dG~i-lwd~~ 491 (1134)
...+.+| ..+|..++++|..+++++++ .|+.+ +|...
T Consensus 414 ------------~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 414 ------------LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ------------hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 4567788 88899999999999999999 78888 88653
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.3e-23 Score=211.16 Aligned_cols=281 Identities=12% Similarity=0.179 Sum_probs=221.7
Q ss_pred ccCCCcccEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.+.+|.+.+..++|+|- |..||+++.|..+++|+....+......+-.. .+...+.++||+|.|++||+|+-|+++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~--~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD--GHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc--cchheeeeeeecCCCcEEEEeeccceEE
Confidence 35678889999999999 88999999999999999875333333222111 2346788999999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC---eeEEEeccC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQI 358 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~---~l~~tl~~h 358 (1134)
||.-.+. .-+++.++.| |...|.|++||++|++||+++.|+.|-||.+... .+...|.+|
T Consensus 87 Iw~k~~~-------------efecv~~lEG----HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 87 IWKKEDG-------------EFECVATLEG----HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred EeecCCC-------------ceeEEeeeec----cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9986521 3357778888 9999999999999999999999999999999643 356677777
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC---CceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeee
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~---~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l 429 (1134)
+.-|..+.|+|.. ..|+|++ ++++|.-. ..++.+.+.+|.+.|+.+.| |..+++++.|+++++|..
T Consensus 150 -tqDVK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 150 -TQDVKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred -cccccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 7789999999988 8899988 99999765 46888999999999976655 889999999999999985
Q ss_pred eeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC----CcEEEeCCccce
Q 001165 430 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQE 504 (1134)
Q Consensus 430 ~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s----g~Wk~F~~~~~e 504 (1134)
...- -..|++++..+++. +| .||+||.|+.+ +|.-.. ..|+++....+-
T Consensus 225 ~~~~------------------------~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a 278 (312)
T KOG0645|consen 225 YTDL------------------------SGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA 278 (312)
T ss_pred ccCc------------------------chhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence 4211 12477889999998 44 78999999999 997654 467766544443
Q ss_pred eeeEEEEEEeeC---CEEEEEEEecCCCeeEEEEEeC
Q 001165 505 QKIQSKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 505 ~~~~v~gl~W~~---~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
++..|..+.|.+ +.++.| +++.++++|..
T Consensus 279 He~dVNsV~w~p~~~~~L~s~-----~DDG~v~~W~l 310 (312)
T KOG0645|consen 279 HEVDVNSVQWNPKVSNRLASG-----GDDGIVNFWEL 310 (312)
T ss_pred cccccceEEEcCCCCCceeec-----CCCceEEEEEe
Confidence 444678899986 355655 45578898864
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=235.06 Aligned_cols=276 Identities=13% Similarity=0.174 Sum_probs=221.1
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..-.|..+.|.|+|+.+++++..|.+.+|+...+..+.. . ..|...|.++.|++++.++++|..+|.|++|+..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti---l---QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI---L---QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH---h---hhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 356788999999999999999999999999865443221 1 1245788999999999999999999999999987
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
- . .++.+. ..|+..|++++|||....++++++||+|+|||..-.+....+++| .-.|.++
T Consensus 169 m---------------n-nVk~~~---ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwdVksv 228 (464)
T KOG0284|consen 169 M---------------N-NVKIIQ---AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWDVKSV 228 (464)
T ss_pred h---------------h-hhHHhh---HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCCccee
Confidence 1 1 111111 125689999999999999999999999999999887777788888 4579999
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEee
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~ 440 (1134)
.|+|.. ..+++|+ .+++||++++++++.+.+|.+.|..+.| +..++|+|.|.++++.|+..-.+
T Consensus 229 dWHP~k----gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE------ 298 (464)
T KOG0284|consen 229 DWHPTK----GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE------ 298 (464)
T ss_pred ccCCcc----ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH------
Confidence 999987 7889988 8999999999999999999999955555 88999999999999999875444
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEcC-CCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeC--
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-- 516 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp-dG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~-- 516 (1134)
...+.+|...|++++++| .-..+++||.||.+ +|.+... +-.+......+-.|-.|.|.+
T Consensus 299 --------------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~--~p~~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 299 --------------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE--EPLGEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred --------------HHHhhcchhhheeeccccccccceeeccCCCceEEEecccc--ccccCCCcccccceeeeeccccc
Confidence 467889999999999999 56788899999999 9988632 112222223334577899975
Q ss_pred CEEEEEEEecCCCeeEEEEEeCC
Q 001165 517 KIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 517 ~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+++..| +++..+|+|.|.
T Consensus 363 hil~tg-----snd~t~rfw~r~ 380 (464)
T KOG0284|consen 363 HILATG-----SNDRTVRFWTRN 380 (464)
T ss_pred eeEeec-----CCCcceeeeccC
Confidence 444443 677889999996
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=4.2e-23 Score=227.03 Aligned_cols=263 Identities=15% Similarity=0.120 Sum_probs=213.9
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
....|++++|+.+|..+|+++.||.+++|+..+........ |.++|+++.||.+|.+|++|+.||++.+||..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~-------HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ-------HKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc-------cCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 45679999999999999999999999999987654433322 44889999999999999999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+|+....+.- |..+-..|.|-.+ ..+|+.+.||.|.|.-+...+++.++.+| .++|+++
T Consensus 307 ---------------~g~~~q~f~~----~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH-~g~V~al 365 (524)
T KOG0273|consen 307 ---------------TGTVKQQFEF----HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGH-HGEVNAL 365 (524)
T ss_pred ---------------CceEEEeeee----ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecc-cCceEEE
Confidence 6666666554 8888788999654 57888999999999999999999999996 7899999
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEE--ec----------CCEEEeeecCCcEEeeeeee
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF----------GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~--s~----------~k~l~S~s~d~ti~~w~l~~ 431 (1134)
.|+|.+ ..|+|++ ++++|+.........+.+|+..|+.. +| +..+++++.|+++++||+..
T Consensus 366 k~n~tg----~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 366 KWNPTG----SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred EECCCC----ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 999999 8999988 99999988777777777888777443 22 34688999999999999876
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEE
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK 510 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~ 510 (1134)
+.. ..++..|..||.+++|||||+|+|+|+.||.+ +|++.+++ +|...... --+.
T Consensus 442 gv~--------------------i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~~~~--~~If 497 (524)
T KOG0273|consen 442 GVP--------------------IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSYQGT--GGIF 497 (524)
T ss_pred Cce--------------------eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh--eeEeecCC--CeEE
Confidence 654 56788999999999999999999999999999 99999984 33221111 2366
Q ss_pred EEEeeC-CEEEEEEEe
Q 001165 511 GLLWLG-KIIVVCNYI 525 (1134)
Q Consensus 511 gl~W~~-~~lv~~~~~ 525 (1134)
.++|.. +..+.+|+.
T Consensus 498 el~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 498 ELCWNAAGDKLGACAS 513 (524)
T ss_pred EEEEcCCCCEEEEEec
Confidence 899962 234444453
No 30
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.9e-22 Score=227.92 Aligned_cols=407 Identities=14% Similarity=0.095 Sum_probs=240.9
Q ss_pred EEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccC--CCccccccCCCcccccccCCCcccEEE
Q 001165 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFP--SNGLASVDTSGAFVSDHKFPISSAIIW 213 (1134)
Q Consensus 136 ~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~l~s~~~~~~~~~~~~~~~~~~V~~ 213 (1134)
.||+-..+.|++|+.+|.|+++ +.++.. + +..+|++. +...+................--...+
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlF--np~tL~-y-----------~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA 329 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLF--NPETLD-Y-----------AGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA 329 (1080)
T ss_pred ceeeeecceEEEeeccceeeec--Ccchhh-h-----------ccccccccccccchhhcccccccccccCcccCCceeE
Confidence 4566677899999999999875 333211 1 11222211 111111111100000011111223457
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCc--------cccceeccccc-C-CCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGL--------KLAEFIKIDKE-L-GSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~--------~~~~~~~~~~~-~-~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+.|++....+.+++.|..+|+|++.+... .+..++|.... . +....+..++ |.+ -+.+++.|||||+|
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl-p~~-cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL-PRG-CFTTCSSDGTIRLW 407 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccC-Ccc-ceeEecCCCcEEEe
Confidence 89999999999999999999999965321 11223332110 0 1112222222 333 38899999999999
Q ss_pred eccccc--cceee-------eeee-ccCc-------ceEEEEeec-ccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEe
Q 001165 284 DLAESA--SLIRT-------VSLY-DWGM-------REVYYTFCR-YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 284 d~~~~~--~~~~~-------l~l~-~~~~-------~~~l~~l~~-~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
+++..+ ...+. +.+. ..++ +..+..-.+ ...+..-.+.+++.||||++||+|..-|+++|++
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 998522 10000 0000 0000 000000000 0011345699999999999999999999999999
Q ss_pred cCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeC-CCceEEEEecCCCccEEEEec---C--CEEE
Q 001165 346 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE-YGYRLYAIEEGSSERVLIFSF---G--KCCL 416 (1134)
Q Consensus 346 v~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~-~~~~l~~~~~~h~~~v~~~s~---~--k~l~ 416 (1134)
+..-+.++.++.| .++|.++.++.... ....|++++ -|.++|+ +.|.++.+..+|+..|..+.| + ..++
T Consensus 488 Lq~l~~~~~~eAH-esEilcLeyS~p~~-~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 488 LQELEYTCFMEAH-ESEILCLEYSFPVL-TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred ehhhhhhhheecc-cceeEEEeecCchh-hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 9988888888887 88999999986532 226788888 6678887 567888888999999977666 3 5678
Q ss_pred eeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE
Q 001165 417 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 417 S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W 495 (1134)
|.+.|+.+.........+...+.+ .+-......+..+++.|..+++++++.|..| +|++.+|+-
T Consensus 566 scGADksimFr~~qk~~~g~~f~r---------------~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPR---------------HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eccCchhhheehhccccCceeccc---------------cccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 888888776543322222111111 0111122358899999999999999999999 999999874
Q ss_pred -EEeCC-ccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC--CCCCcceeEEEecCCccEEEEecCCEEEEEEc
Q 001165 496 -RVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 571 (1134)
Q Consensus 496 -k~F~~-~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~--~ld~~~~~~~~~l~~~~~~l~~~~d~llv~~~ 571 (1134)
|.|+. ..+|.+..-..+.-.+.|+++.|. +..|-+|++. ..-..-..+.+.+.+ +-+..+=.+|+-+..
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-----dktl~~~Df~sgEcvA~m~GHsE~VTG--~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCS-----DKTLCFVDFVSGECVAQMTGHSEAVTG--VKFLNDCKHLISVSG 703 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeec-----CCceEEEEeccchhhhhhcCcchheee--eeecccchhheeecC
Confidence 56754 334454332344455666665544 2568888774 111111122221111 112222246777889
Q ss_pred CCeEEEEEEEE
Q 001165 572 PFDVHIFHVKL 582 (1134)
Q Consensus 572 d~~i~l~~~~~ 582 (1134)
|+.|.+|++..
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999998863
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=8.3e-23 Score=244.41 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=219.8
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
+...|.++.|+++|+.++.++.|+.+.+|............. -.+...|.+++|+|+++.+++|+.|++|++||+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l----~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL----SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc----cccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 467889999999999999999999999999844331111111 1245678999999999999999999999999994
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+ .+..++++++ |...|++++|+|+|+.+++|+.|++|+|||+.++.+..++.+| ...|+++
T Consensus 234 ~--------------~~~~~~~l~g----H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~ 294 (456)
T KOG0266|consen 234 D--------------DGRNLKTLKG----HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGL 294 (456)
T ss_pred C--------------CCeEEEEecC----CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEE
Confidence 1 5678888888 9999999999999999999999999999999999999999998 6799999
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCce--EEEEecCCCcc--E--EEEec-CCEEEeeecCCcEEeeeeeeCCCeE
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~--l~~~~~~h~~~--v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l 436 (1134)
+|++++ ..+++++ .+++||..+++ +.....++... + ++|++ ++.+++++.|+++++|++..+..
T Consensus 295 ~f~~d~----~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-- 368 (456)
T KOG0266|consen 295 AFSPDG----NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-- 368 (456)
T ss_pred EECCCC----CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--
Confidence 999999 8888887 89999999999 45565555544 4 67777 99999999999999999866554
Q ss_pred EEeecCCCccccccccccceeeccCCC---ceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEE
Q 001165 437 LVVQSEDTDELKILHLNLPVSYISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGL 512 (1134)
Q Consensus 437 ~l~~g~~~~~~~w~~~~~~~~~~~h~~---~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl 512 (1134)
+..+.+|+. .+.+...+++|+++.+|+.|+.+ +||..++.-..- -..+- .-.+..+
T Consensus 369 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~-l~~h~-~~~~~~~ 428 (456)
T KOG0266|consen 369 ------------------VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR-LEGHS-KAAVSDL 428 (456)
T ss_pred ------------------eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh-hcCCC-CCceecc
Confidence 556666665 44555668999999999999999 999998632111 11111 2335567
Q ss_pred EeeCC--EEEEEEEecCCCeeEEEEEeC
Q 001165 513 LWLGK--IIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 513 ~W~~~--~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.|... +++.+. .+.+..+++|..
T Consensus 429 ~~~~~~~~~~s~s---~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 429 SSHPTENLIASSS---FEGDGLIRLWKY 453 (456)
T ss_pred ccCCCcCeeeecC---cCCCceEEEecC
Confidence 77643 344331 235677888865
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.3e-23 Score=223.94 Aligned_cols=277 Identities=14% Similarity=0.203 Sum_probs=207.0
Q ss_pred EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcce
Q 001165 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1134)
Q Consensus 25 v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~ 103 (1134)
+.||++|++||+++ |.|..||.+. +.+.+ ..+.+. ..+..++..+.||||+++|++++.+..+.+||++++....
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~-kl~~tl--vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVV-YDVHF-KLKKTL--VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEe-cCcce-eeeeee--ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 89999999999988 5689999996 54442 223332 2356788999999999999999999999999999875332
Q ss_pred -ecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccc
Q 001165 104 -QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1134)
Q Consensus 104 -~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i 182 (1134)
+..++ +-....+++.|||..+++|+.|+++..|+.||......+
T Consensus 306 ~y~~~~---------------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~-------------- 350 (519)
T KOG0293|consen 306 LYPSGL---------------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE-------------- 350 (519)
T ss_pred hcccCc---------------------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc--------------
Confidence 22111 011234577889999999999999998877776543321
Q ss_pred cccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEE
Q 001165 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCA 262 (1134)
Q Consensus 183 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 262 (1134)
.-....|.+++.++||..+...+.|-.+.+++...... .++.. ....+++.
T Consensus 351 ----------------------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---r~lis----e~~~its~ 401 (519)
T KOG0293|consen 351 ----------------------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---RGLIS----EEQPITSF 401 (519)
T ss_pred ----------------------ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---hcccc----ccCceeEE
Confidence 11235689999999999999999999999977643221 11111 13679999
Q ss_pred EECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcC--eEEEEECC-CCCEEEEEECCC
Q 001165 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGP--VSCIAWTP-DNSAFAVGWKSR 339 (1134)
Q Consensus 263 a~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~--V~~l~fSP-DG~~Lasg~~Dg 339 (1134)
++|.+++++.+--.+.++++||++ ....++.+.| |+.. |-.-+|-- |..++|||++|+
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~---------------e~~lv~kY~G----hkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLE---------------ENKLVRKYFG----HKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecc---------------hhhHHHHhhc----ccccceEEEeccCCCCcceEEecCCCc
Confidence 999999999999999999999999 3333333333 5543 22233433 557999999999
Q ss_pred cEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC
Q 001165 340 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 392 (1134)
Q Consensus 340 ~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~ 392 (1134)
.|.||+..++.++.++.|| ...|++++++|.++ .+++|++ ++++|.+..
T Consensus 463 kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 463 KVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEEEccCCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCCc
Confidence 9999999999999999998 67899999999873 6677776 888887653
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=2.9e-22 Score=214.62 Aligned_cols=321 Identities=12% Similarity=0.133 Sum_probs=247.0
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCC
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~ 143 (1134)
|.+.+.+++..|+.+.+|+|+.|..-.||++..+....... ++..+| ..|+.||.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-----------------------gHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-----------------------GHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-----------------------CCCCceEEEEEccCce
Confidence 45688999999999999999999999999997653111111 122234 45667888
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
.+++|.-+|.|.+| +..+..... .+......+.-+.|+|.+..+
T Consensus 120 lLATGdmsG~v~v~--~~stg~~~~----------------------------------~~~~e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 120 LLATGDMSGKVLVF--KVSTGGEQW----------------------------------KLDQEVEDIEWLKWHPRAHIL 163 (399)
T ss_pred EEEecCCCccEEEE--EcccCceEE----------------------------------EeecccCceEEEEecccccEE
Confidence 88888889998874 444332220 111334567788999999999
Q ss_pred EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 224 a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
+.++.||.++.|.++..... .+.+ .+..+++|=.|.|+|+.+++|..||+|++||.. ++
T Consensus 164 lAG~~DGsvWmw~ip~~~~~---kv~~---Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k---------------tg 222 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQALC---KVMS---GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK---------------TG 222 (399)
T ss_pred EeecCCCcEEEEECCCccee---eEec---CCCCCcccccccCCCceEEEEecCceEEEEecC---------------CC
Confidence 99999999999999764211 1111 245788999999999999999999999999999 88
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc-------CCCCceeeeEEcCCCCCCc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-------ISLSSISSPIVKPNQDCKY 376 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~-------h~~~~V~sv~~sp~~~~~~ 376 (1134)
+++..+.+ ...+.-.++.++.+|..+.+|+.++.+.+-+-.+++.+....+ .+...+.++.+.|.. +..
T Consensus 223 ~p~~~~~~---~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~l 298 (399)
T KOG0296|consen 223 QPLHKITQ---AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKL 298 (399)
T ss_pred ceeEEecc---cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-ccc
Confidence 88887664 2346788999999999999999999999999888777666552 113445566665543 233
Q ss_pred ceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccc
Q 001165 377 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 451 (1134)
Q Consensus 377 ~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~ 451 (1134)
...+.|+ ++.+||....++-... .|...|..+.+ .+.+++++.+|.++.||.++|..
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l----------------- 360 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQL----------------- 360 (399)
T ss_pred chhhcccccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccce-----------------
Confidence 5566666 9999999887665554 57788877777 47899999999999999988775
Q ss_pred cccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 452 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 452 ~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
..+|.||+.+|...+++|++++++++|.|+.. +|++.
T Consensus 361 ---~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 ---KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 57899999999999999999999999999999 88763
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=6.1e-23 Score=218.43 Aligned_cols=279 Identities=13% Similarity=0.151 Sum_probs=224.4
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc-cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.+.+|.+.|.++++.|....|++++.|+++.+|++..+..+. ..+ +...+..++||+...++.+++.|++|+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-------hi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-------HIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-------hhheeeeeeecccCceEEEecCCCeeE
Confidence 456899999999999999999999999999999997655432 122 235677899999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
.||+. .++.++..-| |-..|.|++..|.-..|++|+.|.+++|||+.+...+.++.|| .+
T Consensus 219 CwDLe---------------~nkvIR~YhG----HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~ 278 (460)
T KOG0285|consen 219 CWDLE---------------YNKVIRHYHG----HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TN 278 (460)
T ss_pred EEech---------------hhhhHHHhcc----ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CC
Confidence 99999 6666666655 9999999999999999999999999999999999999999998 88
Q ss_pred ceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 362 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.|.++.+.|.+ ..+++|+ ++++||...++-..+...|...+ ++++| ...++|+|.| .++.|++..+.-
T Consensus 279 ~V~~V~~~~~d----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f- 352 (460)
T KOG0285|consen 279 PVASVMCQPTD----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF- 352 (460)
T ss_pred cceeEEeecCC----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch-
Confidence 99999999887 6788888 99999999999888888887777 55566 5577888888 688898766654
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCC-ccc----eeeeEE
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQ----EQKIQS 509 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~-~~~----e~~~~v 509 (1134)
...+.+|+..|++++...|| ++++||++|.+ .||..+|.-..+.. ..| |.+--+
T Consensus 353 -------------------~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI 412 (460)
T KOG0285|consen 353 -------------------LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI 412 (460)
T ss_pred -------------------hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccce
Confidence 44578999999999999888 66789999999 99999985433321 111 111112
Q ss_pred EEEEe--eCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 510 KGLLW--LGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 510 ~gl~W--~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
...+. .+--+|+| +.+..|++|..+
T Consensus 413 ~as~fDktg~rlit~-----eadKtIk~~keD 439 (460)
T KOG0285|consen 413 FASCFDKTGSRLITG-----EADKTIKMYKED 439 (460)
T ss_pred eEEeecccCceEEec-----cCCcceEEEecc
Confidence 22233 34456666 566789999764
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=204.37 Aligned_cols=257 Identities=9% Similarity=0.082 Sum_probs=189.7
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcce-eEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecC-
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE- 100 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~- 100 (1134)
..+.++||++.||+++...|+|+|++...- |+..+.. +.+.++.|.|--||+..++++.||+++|||+....
T Consensus 44 NrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~------h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 44 NRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG------HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred eeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec------cCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence 448899999999999999999999974322 3444321 23567899999999999999999999999996532
Q ss_pred cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 101 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
++.+. +.. ++ ...++.|+..+++++..+|.|++|+.-.......
T Consensus 118 qR~~~--~~s---pV------------------n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~------------- 161 (311)
T KOG0315|consen 118 QRNYQ--HNS---PV------------------NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE------------- 161 (311)
T ss_pred chhcc--CCC---Cc------------------ceEEecCCcceEEeecCCCcEEEEEccCCccccc-------------
Confidence 11111 000 11 1234556778899999999998754322211100
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc-cceecccccCCCCCe
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKIDKELGSGDA 259 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 259 (1134)
........|.+++..|+|.+++.+.+.|+.++|+........ ...+. ....+...+
T Consensus 162 ----------------------liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~-k~~ah~~~i 218 (311)
T KOG0315|consen 162 ----------------------LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH-KFQAHNGHI 218 (311)
T ss_pred ----------------------cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh-heecccceE
Confidence 122345789999999999999999999999999986422111 11110 011256789
Q ss_pred EEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC
Q 001165 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
..+.+|||+++||++++|.+|+||+.++. -+...++.+ |.+.|..++||.||++|++|+.|+
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~--------------~kle~~l~g----h~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDF--------------FKLELVLTG----HQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCc--------------eeeEEEeec----CCceEEeeeeccCccEEEecCCCC
Confidence 99999999999999999999999999832 123334555 999999999999999999999999
Q ss_pred cEEEEecCCCeeEEEeccCCCCc
Q 001165 340 GLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 340 ~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
.+++|++..++.+....+|+...
T Consensus 281 ~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred ceeecccccCceeeecCCccccc
Confidence 99999999999888888886543
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=4.4e-22 Score=255.14 Aligned_cols=291 Identities=12% Similarity=0.116 Sum_probs=217.6
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecc-cccCCCCCeEEEEECC-CCCEEEEeeeCCeEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAVCASIAP-EQQILAVGTRRGVVE 281 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~ 281 (1134)
+..|...|.+++|+|+++.+++++.||.+.+|+.............+ ....+...+.+++|+| ++++||+|+.||+|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 44578899999999999999999999999999975321100000000 0011235788999988 478999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
+||+. +++.+.++.+ |.+.|++++|+| ||.+|+||+.||+|++||+.++..+.++..+
T Consensus 559 lWd~~---------------~~~~~~~~~~----H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-- 617 (793)
T PLN00181 559 VWDVA---------------RSQLVTEMKE----HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-- 617 (793)
T ss_pred EEECC---------------CCeEEEEecC----CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--
Confidence 99998 6777777776 999999999997 8999999999999999999988888888754
Q ss_pred CceeeeEEcC-CCCCCcceEEEcc---eeEEEeCCCce-EEEEecCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCC
Q 001165 361 SSISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 361 ~~V~sv~~sp-~~~~~~~~l~sgs---~i~~W~~~~~~-l~~~~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
..|.++.|++ ++ ..+++|+ ++++||....+ .+....+|...|..+.+ +..+++++.|+++++||+..+.
T Consensus 618 ~~v~~v~~~~~~g----~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 618 ANICCVQFPSESG----RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred CCeEEEEEeCCCC----CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCc
Confidence 4788999954 45 6788877 89999998765 45566789888855555 7889999999999999976432
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc--EE-EeCCcc-------
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WR-VFGDIT------- 502 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~--Wk-~F~~~~------- 502 (1134)
... . ......+.+|...+.+++|+|+|++||+|+.||.+ +|+..... |. .|....
T Consensus 694 ~~~-----------~---~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~ 759 (793)
T PLN00181 694 SGI-----------N---ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEV 759 (793)
T ss_pred ccc-----------C---CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccccc
Confidence 100 0 01134677899999999999999999999999999 99976542 11 122111
Q ss_pred ceeeeEEEEEEeeCC--EEEEEEEecCCCeeEEEEEeC
Q 001165 503 QEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 503 ~e~~~~v~gl~W~~~--~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.+....|..++|.++ .+++| +.+..|++|+.
T Consensus 760 ~~~~~~V~~v~ws~~~~~lva~-----~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSSTLVAA-----NSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCeEEEe-----cCCCcEEEEec
Confidence 112234778999754 56666 34466888853
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-22 Score=229.60 Aligned_cols=353 Identities=14% Similarity=0.092 Sum_probs=251.3
Q ss_pred eEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccE
Q 001165 134 SVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1134)
Q Consensus 134 ~V~~~--s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V 211 (1134)
.|.|+ .|..--++.+.-+|+|.+|..+.++..+. +.-...+|
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks------------------------------------feV~~~Pv 58 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS------------------------------------FEVSEVPV 58 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeee------------------------------------eeecccch
Confidence 44443 44445688888999999876655432211 11234677
Q ss_pred EEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccc
Q 001165 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~ 291 (1134)
.+..|-+..+.+++++.|++|++++.++...-. ... .|.+-+.|++++|...++.+++.|-+|++||.++..
T Consensus 59 Ra~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--~Fe----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-- 130 (794)
T KOG0276|consen 59 RAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--TFE----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-- 130 (794)
T ss_pred hhheeeeccceEEEecCCceEEEEecccceeeE--Eee----ccccceeeeeecCCCCeEEecCCccEEEEeeccCce--
Confidence 888899999999999999999999987644211 111 245778999999999999999999999999998422
Q ss_pred eeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcC
Q 001165 292 IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 292 ~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
.+..++.| |+.-|.+|+|.| |.+.+||++-|+||+||++....+..|+++| ..+|+++.+.+
T Consensus 131 ------------a~~qtfeG----H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~ 193 (794)
T KOG0276|consen 131 ------------ACEQTFEG----HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYT 193 (794)
T ss_pred ------------eeeeEEcC----cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEecc
Confidence 34455666 999999999999 7889999999999999999999999999988 88999999998
Q ss_pred CCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCC
Q 001165 371 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 444 (1134)
Q Consensus 371 ~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~ 444 (1134)
.++ ..+++||+ ++++||.++.+|+.++.||...| +.|.| -..++|||.|||+++|+..+-..
T Consensus 194 ~gd--kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l---------- 261 (794)
T KOG0276|consen 194 GGD--KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL---------- 261 (794)
T ss_pred CCC--cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh----------
Confidence 873 36899998 99999999999999999999988 56666 77889999999999998543222
Q ss_pred ccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCcEEEeCCccceeeeEEE-EEEeeCCEEEEE-
Q 001165 445 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVC- 522 (1134)
Q Consensus 445 ~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk~F~~~~~e~~~~v~-gl~W~~~~lv~~- 522 (1134)
..++.-.-..|++++-.+.++.+|+|.+.|.+.-.+- .+..--.|... .+.|.++.-|.+
T Consensus 262 ----------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lg--------reeP~vsMd~~gKIiwa~~~ei~~~ 323 (794)
T KOG0276|consen 262 ----------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLG--------REEPAVSMDSNGKIIWAVHSEIQAV 323 (794)
T ss_pred ----------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEcc--------CCCCceeecCCccEEEEcCceeeee
Confidence 2233333457899999899999999999998855442 22222223333 378875543332
Q ss_pred EEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEEecCCEEEEEEcCCeEEEEE
Q 001165 523 NYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 579 (1134)
Q Consensus 523 ~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~ 579 (1134)
+...-....++.=-.|-.|.-..+... ++-.+.+..++.|..++| +.||+..||.
T Consensus 324 ~~ks~~~~~ev~DgErL~LsvKeLgs~-eiyPq~L~hsPNGrfV~V-cgdGEyiIyT 378 (794)
T KOG0276|consen 324 NLKSVGAQKEVTDGERLPLSVKELGSV-EIYPQTLAHSPNGRFVVV-CGDGEYIIYT 378 (794)
T ss_pred eceeccCcccccCCccccchhhhcccc-ccchHHhccCCCCcEEEE-ecCccEEEEE
Confidence 221111111221111112222222222 232345667777665554 8899999985
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=2.9e-21 Score=212.97 Aligned_cols=275 Identities=20% Similarity=0.264 Sum_probs=215.8
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+.+|...|.++.|+|+++.+++++.||.+.+|+........ ... .+...+.++.|+|+++.+++|+.||.|++|
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLK----GHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--EEe----cCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 44788999999999999999999999999999987543211 111 133566799999999999999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
++. +++....+.+ |.+.|.++.|+|+++++++++.||.+.+||+.+++....+..| ...+
T Consensus 79 ~~~---------------~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i 138 (289)
T cd00200 79 DLE---------------TGECVRTLTG----HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWV 138 (289)
T ss_pred EcC---------------cccceEEEec----cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcE
Confidence 998 4455555555 8889999999999999999998999999999988888888766 6689
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEE
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~ 437 (1134)
.++.++|++ ..++++. .+.+|+..+++.......|...+ +.+++ ++.+++++.|+.+++|++..+..
T Consensus 139 ~~~~~~~~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--- 211 (289)
T cd00200 139 NSVAFSPDG----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--- 211 (289)
T ss_pred EEEEEcCcC----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce---
Confidence 999999986 6777654 89999999888888877887777 44555 66888888899999999765332
Q ss_pred EeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE-EEeCCccceeeeEEEEEEee
Q 001165 438 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW-RVFGDITQEQKIQSKGLLWL 515 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W-k~F~~~~~e~~~~v~gl~W~ 515 (1134)
...+..|..+|.+++++|++.++++++.+|.+ +|++.+++- ..+. .+ ...+..+.|.
T Consensus 212 -----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~--~~~i~~~~~~ 270 (289)
T cd00200 212 -----------------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GH--TNSVTSLAWS 270 (289)
T ss_pred -----------------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--cc--CCcEEEEEEC
Confidence 23445788899999999999999999889999 999986542 2222 11 1246778887
Q ss_pred C--CEEEEEEEecCCCeeEEEEEe
Q 001165 516 G--KIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 516 ~--~~lv~~~~~~~~~~~eLrly~ 537 (1134)
+ +.++++ +.+..+++|+
T Consensus 271 ~~~~~l~~~-----~~d~~i~iw~ 289 (289)
T cd00200 271 PDGKRLASG-----SADGTIRIWD 289 (289)
T ss_pred CCCCEEEEe-----cCCCeEEecC
Confidence 6 466665 3445677773
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=2.3e-21 Score=213.85 Aligned_cols=267 Identities=17% Similarity=0.209 Sum_probs=211.9
Q ss_pred EeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEE
Q 001165 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (1134)
Q Consensus 137 ~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~f 216 (1134)
++.++++.+++++.+|.+.+|..+... ... ....+...+..+.|
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~----------------------------------~~~~~~~~i~~~~~ 59 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGE--LLR----------------------------------TLKGHTGPVRDVAA 59 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCC--cEE----------------------------------EEecCCcceeEEEE
Confidence 445667888999999999987665332 110 12345667789999
Q ss_pred cCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeee
Q 001165 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1134)
Q Consensus 217 sp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~ 296 (1134)
+|+++.+++++.||.+.+|+....... .... .+...+.+++|+|+++++++|+.||.|++|++.
T Consensus 60 ~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---------- 123 (289)
T cd00200 60 SADGTYLASGSSDKTIRLWDLETGECV--RTLT----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---------- 123 (289)
T ss_pred CCCCCEEEEEcCCCeEEEEEcCcccce--EEEe----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC----------
Confidence 999999999999999999998753211 1111 123578999999999999999889999999998
Q ss_pred eeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCc
Q 001165 297 LYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 376 (1134)
Q Consensus 297 l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~ 376 (1134)
+++....+.. |.+.|.+++|+|++.++++++.||.+++||+.+++....+..| ...+.++.++|++
T Consensus 124 -----~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~---- 189 (289)
T cd00200 124 -----TGKCLTTLRG----HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDG---- 189 (289)
T ss_pred -----CcEEEEEecc----CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCc----
Confidence 5666666655 8899999999999999999998999999999988888888766 5689999999998
Q ss_pred ceEEEcc---eeEEEeCCCceEEEEecCCCccEE--EEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccc
Q 001165 377 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 450 (1134)
Q Consensus 377 ~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~--~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~ 450 (1134)
..++.++ .+.+|+...++......+|...+. .+++ ++.+++++.|+.+++|++..+..
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~---------------- 253 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC---------------- 253 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee----------------
Confidence 6666554 899999998888887777777774 4455 66777777799999999765433
Q ss_pred ccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 451 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 451 ~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
...+..|..+|.+++|+|+|++|++++.||.+ +|+
T Consensus 254 ----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 ----VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 23445788899999999999999999999999 985
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=4.6e-22 Score=228.82 Aligned_cols=311 Identities=14% Similarity=0.155 Sum_probs=231.8
Q ss_pred EEEEEcCCeEEEeecCCcce---eEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCC
Q 001165 33 LLLIASPCHIELWSSSQHKV---RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1134)
Q Consensus 33 llAs~s~~~l~IW~~~~~~~---~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~ 109 (1134)
.++...++++..+..+ ... +-+...+..+-..|...+..+++|.|+..++++++ +.++||+.++...
T Consensus 337 ~lv~l~nNtv~~ysl~-~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kc-------- 406 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLE-NSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKC-------- 406 (888)
T ss_pred eEEEeecCceEEEEec-cCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcce--------
Confidence 4556778888888775 211 11221222222234457899999999887777654 5699999975311
Q ss_pred CCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCc
Q 001165 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (1134)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 189 (1134)
+.+ ++....-..+|.|.+..+++|+.+|.+.+++.-.....
T Consensus 407 -----iRT----------i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~------------------------ 447 (888)
T KOG0306|consen 407 -----IRT----------ITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV------------------------ 447 (888)
T ss_pred -----eEE----------eccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh------------------------
Confidence 111 11112234678888899999999999988754322110
Q ss_pred cccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc--ccc---ceecccc-cCCCCCeEEEE
Q 001165 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL--KLA---EFIKIDK-ELGSGDAVCAS 263 (1134)
Q Consensus 190 l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~--~~~---~~~~~~~-~~~~~~~~~va 263 (1134)
.....|++.|.+|+.+||+..+++++.|.+|.+|+..-... ... -.+...+ ..-.+++.|++
T Consensus 448 ------------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 448 ------------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred ------------hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 02347899999999999999999999999999999742111 100 0111100 01147899999
Q ss_pred ECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEE
Q 001165 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 343 (1134)
Q Consensus 264 ~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~v 343 (1134)
+||||+++|+|--|.+|+||-++ +-+-.-++-| |+=||.||..|||++.++|||.|++|++
T Consensus 516 ~Spdgk~LaVsLLdnTVkVyflD---------------tlKFflsLYG----HkLPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 516 VSPDGKLLAVSLLDNTVKVYFLD---------------TLKFFLSLYG----HKLPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred EcCCCcEEEEEeccCeEEEEEec---------------ceeeeeeecc----cccceeEEeccCCcCeEEeccCCCceEE
Confidence 99999999999999999999999 3333334444 9999999999999999999999999999
Q ss_pred EecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEe--c-CCEEEe
Q 001165 344 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLN 417 (1134)
Q Consensus 344 Wdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s--~-~k~l~S 417 (1134)
|-+.-|.|..++-+| .++|.++.|-|.. ..+.+++ .++.||.+..+.+....+|...|+++. + |..++|
T Consensus 577 WGLdFGDCHKS~fAH-dDSvm~V~F~P~~----~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 577 WGLDFGDCHKSFFAH-DDSVMSVQFLPKT----HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred eccccchhhhhhhcc-cCceeEEEEcccc----eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEe
Confidence 999888888999887 7899999999976 6666665 899999999999999999999996654 4 889999
Q ss_pred eecCCcEEeee
Q 001165 418 RGVSGMTYARQ 428 (1134)
Q Consensus 418 ~s~d~ti~~w~ 428 (1134)
+|.|.++++|.
T Consensus 652 ~shD~sIRlwE 662 (888)
T KOG0306|consen 652 SSHDKSIRLWE 662 (888)
T ss_pred ccCCceeEeee
Confidence 99999999997
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.7e-21 Score=222.43 Aligned_cols=241 Identities=12% Similarity=0.136 Sum_probs=206.2
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
..+.+.|..++|+|.--.+.++.-+|.|.+|+......... .. .|.+++..++|+|++.++++|+.|-+|+||+
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r--Fd----eHdGpVRgv~FH~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR--FD----EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh--hh----ccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence 35678899999999999999999999999999875443211 10 1457889999999999999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
.+ +..++.++.| |..-|..+.|.+.--.+.|+|+|.||+||+..++.+++.+.|| ...|.
T Consensus 80 Yk---------------~rrclftL~G----HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVM 139 (1202)
T KOG0292|consen 80 YK---------------TRRCLFTLLG----HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVM 139 (1202)
T ss_pred cc---------------cceehhhhcc----ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEE
Confidence 99 8899999998 9999999999999999999999999999999999999999998 77899
Q ss_pred eeEEcCCCCCCcceEEEcc---eeEEEeCCCce---------------------EE--------EEecCCCccE--EEEe
Q 001165 365 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---------------------LY--------AIEEGSSERV--LIFS 410 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~---------------------l~--------~~~~~h~~~v--~~~s 410 (1134)
+.+|+|.. +.++|++ ++++||..|-+ |+ .+..||+.+| .+|+
T Consensus 140 cAqFhptE----DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 140 CAQFHPTE----DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eeccCCcc----ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 99999987 8899998 99999975511 21 2456898888 5677
Q ss_pred c-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 411 F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 411 ~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
| ...++||+.|..+++|...... .|+ ..+..||..+|.++-|.|....+.+.|.|+++ +|
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetK--------------aWE----vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETK--------------AWE----VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred CCcceEEecCCcceeeEEEecccc--------------cee----ehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 7 7899999999999999864332 243 24567999999999999999999999999999 99
Q ss_pred EccCC
Q 001165 489 DIRQK 493 (1134)
Q Consensus 489 d~~sg 493 (1134)
|++.+
T Consensus 278 Dm~kR 282 (1202)
T KOG0292|consen 278 DMTKR 282 (1202)
T ss_pred ecccc
Confidence 99755
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=1.8e-23 Score=221.18 Aligned_cols=277 Identities=13% Similarity=0.180 Sum_probs=216.9
Q ss_pred ceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEE
Q 001165 133 LSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (1134)
Q Consensus 133 ~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~ 212 (1134)
.+|.|+.-|.+.|++|..|.+|.+ ||.....-. ..+.+|.+.|.
T Consensus 198 kgVYClQYDD~kiVSGlrDnTiki--WD~n~~~c~----------------------------------~~L~GHtGSVL 241 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKI--WDKNSLECL----------------------------------KILTGHTGSVL 241 (499)
T ss_pred CceEEEEecchhhhcccccCceEE--eccccHHHH----------------------------------HhhhcCCCcEE
Confidence 358899999999999999999987 453321111 14679999999
Q ss_pred EEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccce
Q 001165 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~ 292 (1134)
++.|+.. .++++++|.++.+|+.+.+.+...-- -|.+.+..+.||.. ++++++.|.+++|||+..++..
T Consensus 242 CLqyd~r--viisGSSDsTvrvWDv~tge~l~tli------hHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~i- 310 (499)
T KOG0281|consen 242 CLQYDER--VIVSGSSDSTVRVWDVNTGEPLNTLI------HHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDI- 310 (499)
T ss_pred eeeccce--EEEecCCCceEEEEeccCCchhhHHh------hhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHH-
Confidence 9998765 89999999999999998765432111 13466778888764 7999999999999999844310
Q ss_pred eeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 293 RTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 293 ~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
.+.+.+. +|..+|+.+.|+ .+++++++.|++|++|++.++..+.++.+| ..+|.++.+ .+
T Consensus 311 -----------t~rrVLv----GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~ 370 (499)
T KOG0281|consen 311 -----------TLRRVLV----GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RD 370 (499)
T ss_pred -----------HHHHHHh----hhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cC
Confidence 1112233 399999999985 469999999999999999999999999998 667877766 33
Q ss_pred CCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccc
Q 001165 373 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 448 (1134)
Q Consensus 373 ~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~ 448 (1134)
..++||+ ++++|+++.|.++.+++||.+-|-++.| .+.++||+.||++++||+..+.+.-.. .
T Consensus 371 ----rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~-----~---- 437 (499)
T KOG0281|consen 371 ----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAP-----A---- 437 (499)
T ss_pred ----eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCccc-----c----
Confidence 7889988 9999999999999999999998877888 889999999999999998776651000 0
Q ss_pred ccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 449 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 449 w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
..-+..+...|++.|.-+.| |...+++++.|.+| +||...+
T Consensus 438 --~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 438 --STLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred --cchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 00012345678899999999 45778888999999 9998776
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=1.5e-21 Score=250.23 Aligned_cols=319 Identities=13% Similarity=0.088 Sum_probs=206.5
Q ss_pred CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEE
Q 001165 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119 (1134)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~ 119 (1134)
+-.++|+..+-.+ .... +......+.+.+.+++|+|||+++|+++.||+|+||++........ ..+. +...
T Consensus 458 gl~~~~~~~~~~~-~~~~-~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~~------~~~~ 528 (793)
T PLN00181 458 GLCKYLSFSKLRV-KADL-KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIHY------PVVE 528 (793)
T ss_pred hhhhhhcccceEE-EEee-ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-cccc------ceEE
Confidence 4477788753222 1111 1112222456789999999999999999999999999753210000 0000 0011
Q ss_pred EeeceeeccccccceE--EEeee-CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCC
Q 001165 120 LVLNEQLPFAEKGLSV--SNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (1134)
Q Consensus 120 ~~~~~~~~~~~~~~~V--~~~s~-d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~ 196 (1134)
+.. ...+ .++.+ ++..+++++.||+|.+|+... ....
T Consensus 529 ~~~---------~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~----------------------------- 568 (793)
T PLN00181 529 LAS---------RSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLV----------------------------- 568 (793)
T ss_pred ecc---------cCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEE-----------------------------
Confidence 110 0112 23433 357788899999999865432 1111
Q ss_pred CcccccccCCCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEEC-CCCCEEEEe
Q 001165 197 GAFVSDHKFPISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIA-PEQQILAVG 274 (1134)
Q Consensus 197 ~~~~~~~~~~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~s-pdg~llAsG 274 (1134)
..+.+|...|.+++|+| +++.+++++.||.+.+|++...... ..+ .....+.|++|+ +++..+|+|
T Consensus 569 -----~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~--~~~-----~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 569 -----TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI--GTI-----KTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred -----EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE--EEE-----ecCCCeEEEEEeCCCCCEEEEE
Confidence 02346788999999997 7889999999999999998643321 111 123568899995 579999999
Q ss_pred eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC-----
Q 001165 275 TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC----- 349 (1134)
Q Consensus 275 ~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~----- 349 (1134)
+.||+|++||+.+. ...+.++.+ |.+.|.+++|+ ++..|++|+.|++|++||+..+
T Consensus 637 s~dg~I~iwD~~~~--------------~~~~~~~~~----h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 637 SADHKVYYYDLRNP--------------KLPLCTMIG----HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred eCCCeEEEEECCCC--------------CccceEecC----CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 99999999999721 113344444 99999999997 7889999999999999998632
Q ss_pred -eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEE
Q 001165 350 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTY 425 (1134)
Q Consensus 350 -~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~ 425 (1134)
.++.++.+| ...++.++|+|++ ..+++|+ ++.+|+....... ..+.+.
T Consensus 698 ~~~l~~~~gh-~~~i~~v~~s~~~----~~lasgs~D~~v~iw~~~~~~~~----------~s~~~~------------- 749 (793)
T PLN00181 698 ETPLHSFMGH-TNVKNFVGLSVSD----GYIATGSETNEVFVYHKAFPMPV----------LSYKFK------------- 749 (793)
T ss_pred CcceEEEcCC-CCCeeEEEEcCCC----CEEEEEeCCCEEEEEECCCCCce----------EEEecc-------------
Confidence 455666666 4556666666665 5555554 5555554322111 100000
Q ss_pred eeeeeeCCCeEEEeecCCCccccccccccc-eeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 426 ARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 426 ~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~-~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
... .++ .....|...|++++|+|+|++|++|+.+|.| +|++
T Consensus 750 -----~~~-------------------~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 750 -----TID-------------------PVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -----cCC-------------------cccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 000 000 0123456679999999999999999999999 9986
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.9e-22 Score=215.80 Aligned_cols=267 Identities=11% Similarity=0.067 Sum_probs=214.3
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+.++..+|+.+-|.|+--..++++.|+++++|+...+... .... .+.+.+..++|+..|+++|++++|-.+++|
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~Lr----GHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLR----GHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhh----ccccceeEEEEecCccEEEecCCccchhhe
Confidence 4578899999999999999999999999999998654431 1111 134568899999999999999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
|.+.. -++++.+.| |...|.++.|-|-|.+++|++.|.+|+.|++.++-++.++.+| ...|
T Consensus 178 d~~~~--------------~~c~ks~~g----h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewv 238 (406)
T KOG0295|consen 178 DFDTF--------------FRCIKSLIG----HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWV 238 (406)
T ss_pred eHHHH--------------HHHHHHhcC----cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhE
Confidence 99832 233344444 8999999999999999999999999999999999999999998 5689
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-----------C-----CEEEeeecCC
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-----------G-----KCCLNRGVSG 422 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-----------~-----k~l~S~s~d~ 422 (1134)
..++.+.|| ..+++++ ++++|-.++.++...+.+|.-.+ +++.+ + ..+.+++.|+
T Consensus 239 r~v~v~~DG----ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 239 RMVRVNQDG----TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EEEEecCCe----eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 999999999 8899988 99999999998877777776555 22211 2 4788999999
Q ss_pred cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCc
Q 001165 423 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI 501 (1134)
Q Consensus 423 ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~ 501 (1134)
++++||+.++.. .-++.+|...|+.++|+|.|+||++..+|+++ +||+++++.- -.-+
T Consensus 315 tIk~wdv~tg~c--------------------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ 373 (406)
T KOG0295|consen 315 TIKIWDVSTGMC--------------------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLE 373 (406)
T ss_pred eEEEEeccCCeE--------------------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee-eccC
Confidence 999999877643 56788999999999999999999999999999 9999988532 2222
Q ss_pred cceeeeEEEEEEee--CCEEEEE
Q 001165 502 TQEQKIQSKGLLWL--GKIIVVC 522 (1134)
Q Consensus 502 ~~e~~~~v~gl~W~--~~~lv~~ 522 (1134)
.+|. .|+.+... ..++|+|
T Consensus 374 ah~h--fvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 374 AHEH--FVTSLDFHKTAPYVVTG 394 (406)
T ss_pred CCcc--eeEEEecCCCCceEEec
Confidence 4444 23333333 3456655
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=7.8e-22 Score=210.06 Aligned_cols=273 Identities=10% Similarity=0.160 Sum_probs=215.0
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
|.+-+.|+++-|-..++|+|+.|++|+|||+. +|++..++.| |...|..|++|+---+|++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDla---------------tg~LkltltG----hi~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLA---------------TGQLKLTLTG----HIETVRGVAVSKRHPYLFS 210 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcc---------------cCeEEEeecc----hhheeeeeeecccCceEEE
Confidence 45789999999999999999999999999999 8999999988 9999999999999999999
Q ss_pred EECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEE
Q 001165 335 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIF 409 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~ 409 (1134)
+++|+.|+.||+..++.+....|| .+.|.+++.+|.. +.+++|+ ++++||+++...+.++.||.+.| +.+
T Consensus 211 ~gedk~VKCwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC 285 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence 999999999999999988888887 8899999999988 8888887 89999999999999999999998 444
Q ss_pred ec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001165 410 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY 488 (1134)
Q Consensus 410 s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilw 488 (1134)
.+ ...++|+|.|++|++||+..+.. ..++..|+..|++++..|....+|+||.|..-.|
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w 345 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQW 345 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceec
Confidence 54 66889999999999999988776 3567789999999999999999999999986699
Q ss_pred EccCCcEEEeCCccceeeeEEEEEEee-CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCC-----ccEEEEec
Q 001165 489 DIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-----KPIVMDVY 562 (1134)
Q Consensus 489 d~~sg~Wk~F~~~~~e~~~~v~gl~W~-~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~-----~~~~l~~~ 562 (1134)
++-.|. ...|....+ -.+..+.-+ .+++++| +....+-+|+...--+-+.+.+..-|+ .-+..+++
T Consensus 346 ~~p~g~--f~~nlsgh~-~iintl~~nsD~v~~~G-----~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f 417 (460)
T KOG0285|consen 346 KLPEGE--FLQNLSGHN-AIINTLSVNSDGVLVSG-----GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF 417 (460)
T ss_pred cCCccc--hhhcccccc-ceeeeeeeccCceEEEc-----CCceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence 998774 233433222 334455555 4456665 344667788774211212222221122 12233333
Q ss_pred ---CCEEEEEEcCCeEEEEE
Q 001165 563 ---EDYILVTYRPFDVHIFH 579 (1134)
Q Consensus 563 ---~d~llv~~~d~~i~l~~ 579 (1134)
+..|+..-+|..|.+|+
T Consensus 418 Dktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 418 DKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cccCceEEeccCCcceEEEe
Confidence 33466667788888884
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=1.8e-21 Score=203.92 Aligned_cols=272 Identities=13% Similarity=0.091 Sum_probs=211.4
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|.+.|..+.|+|+|..||+++.|..|.+|+..+...+ .+..+ .+.+.|..+.|++|++.|.+++.|.+|+.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----FWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc----eeeec-cccceeEeeeeccCCCEEEEecCCceEEE
Confidence 46789999999999999999999999999999997543321 11111 35578889999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
||+. +|+..+.+++ |++-|+++.=+.-|. ++.||++||+++|||+.....++++.. ..
T Consensus 117 wD~~---------------tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--ky 175 (338)
T KOG0265|consen 117 WDAE---------------TGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KY 175 (338)
T ss_pred Eecc---------------cceeeehhcc----ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ce
Confidence 9999 8999999888 999999998444444 778899999999999998888888865 45
Q ss_pred ceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeC--C
Q 001165 362 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYG--E 433 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~--~ 433 (1134)
.++++.|...+ ..+.+|+ .+++||+..+....+..||.+.| +.+++ |..++|-+.|.++++||+..- .
T Consensus 176 qltAv~f~d~s----~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 176 QLTAVGFKDTS----DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred eEEEEEecccc----cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 78999998777 5566665 78999999999999999999999 44555 889999999999999997532 2
Q ss_pred Ce-EEEeecCCCccccccccccceeeccCCC--ceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEE
Q 001165 434 DR-LLVVQSEDTDELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS 509 (1134)
Q Consensus 434 ~~-l~l~~g~~~~~~~w~~~~~~~~~~~h~~--~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v 509 (1134)
.+ +.+++|+ .|+- ..-.+++||+++++..|+.|..+ +||..+++... .-..|...+.+
T Consensus 252 ~R~v~if~g~-----------------~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly-klpGh~gsvn~ 313 (338)
T KOG0265|consen 252 QRCVKIFQGH-----------------IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY-KLPGHYGSVNE 313 (338)
T ss_pred CceEEEeecc-----------------hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE-EcCCcceeEEE
Confidence 22 4444442 1222 23467899999999999999999 99998876433 33344444444
Q ss_pred EEEEeeCCEEEEE
Q 001165 510 KGLLWLGKIIVVC 522 (1134)
Q Consensus 510 ~gl~W~~~~lv~~ 522 (1134)
..+.-...+++.|
T Consensus 314 ~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 314 VDFHPTEPIILSC 326 (338)
T ss_pred eeecCCCcEEEEe
Confidence 4444444555555
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=7.8e-23 Score=216.36 Aligned_cols=271 Identities=11% Similarity=0.138 Sum_probs=216.0
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
....|+++.|.- ..++++..|.++.+|+.+.... ... ..|.+.+.|+.|. .+.|++|+.|.||+|||+
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L-------~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKIL-------TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhh-------hcCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence 446788887754 5689999999999999864321 111 1245778888875 459999999999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe---eEEEeccCCCCc
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSS 362 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~---l~~tl~~h~~~~ 362 (1134)
+ +|+++.++-+ |...|..+.|+. .++++++.|++++|||+.... +...+.|| .+.
T Consensus 265 ~---------------tge~l~tlih----HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAa 322 (499)
T KOG0281|consen 265 N---------------TGEPLNTLIH----HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAA 322 (499)
T ss_pred c---------------CCchhhHHhh----hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhh
Confidence 9 9999999888 999999999985 589999999999999997654 34456677 788
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
|+.+.|+. .+++|++ ++++|+..+++.+.+..||..+|.++.. ++.++||+.|.||++||+..|..
T Consensus 323 VNvVdfd~------kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c---- 392 (499)
T KOG0281|consen 323 VNVVDFDD------KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC---- 392 (499)
T ss_pred eeeecccc------ceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH----
Confidence 99998843 5777766 9999999999999999999999999988 99999999999999999877664
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE-E-----eCCccceeeeEEEE
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-V-----FGDITQEQKIQSKG 511 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk-~-----F~~~~~e~~~~v~g 511 (1134)
...+.||..-|+++.| |.+.+++|+.||.| +||++++.=. . .-....|+...|.+
T Consensus 393 ----------------LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 393 ----------------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred ----------------HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 4567799999999999 46789999999999 9999877311 0 00111244456778
Q ss_pred EEeeCCEEEEEEEecCCCeeEEEEEeCC-CCCC
Q 001165 512 LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQ 543 (1134)
Q Consensus 512 l~W~~~~lv~~~~~~~~~~~eLrly~~~-~ld~ 543 (1134)
+....--+|++ +.+++|.+|++. .++.
T Consensus 455 LQFD~fqIvss-----sHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 455 LQFDEFQIISS-----SHDDTILIWDFLNGPPS 482 (499)
T ss_pred EeecceEEEec-----cCCCeEEEEEcCCCCcc
Confidence 88777777776 567899999996 3443
No 48
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=5.3e-22 Score=207.61 Aligned_cols=245 Identities=15% Similarity=0.164 Sum_probs=187.6
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+..|...|+++.|.|....+++++.|+++.++++++...+..-.. ......+.|++|+|.|.+|++|...-++++
T Consensus 167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~----~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV----FQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH----hhccceeeeEeecCCCceEEEecCCCceeE
Confidence 3667888999999999999999999999999999976443321111 124577899999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc-CCCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLS 361 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~-h~~~ 361 (1134)
||+.. -++...-. ...+|++.|++|.+|+.|+.-++|+.||.|++||--+++|+.++.. |+.+
T Consensus 243 Ydv~T---------------~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 243 YDVNT---------------YQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred Eeccc---------------eeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 99983 22221111 2335999999999999999999999999999999888899999976 7788
Q ss_pred ceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC--CccE-----EEEec-CCEEEee-ecCCcEEeeee
Q 001165 362 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV-----LIFSF-GKCCLNR-GVSGMTYARQV 429 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h--~~~v-----~~~s~-~k~l~S~-s~d~ti~~w~l 429 (1134)
+|.+..|..++ .++.|.+ .+++|.+.+++.+....|- +++. ..|.- ...++.. -..+.+..||.
T Consensus 307 evcSa~Ftkn~----kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 307 EVCSAVFTKNG----KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred eeeeEEEccCC----eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccc
Confidence 99999999999 8888765 8999999999988776542 1111 11222 1222211 12245667887
Q ss_pred eeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 430 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 430 ~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
.+++.. ..--.+||++++++.-||.+.-+.++|.|-.+ .|--
T Consensus 383 Rtadr~-------------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 383 RTADRV-------------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cchhhh-------------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 665542 12246999999999999999999999999988 7753
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.5e-22 Score=213.99 Aligned_cols=237 Identities=14% Similarity=0.098 Sum_probs=182.7
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
.+|..+|..+.||||.+++++++.|..+.+|++..+.....-... ....+.|++|.|||..+++|+.|+++..||
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-----~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-----LGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-----cCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 356667888899999998888888888899988765543211110 125678999999999999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
++. ..+...++ -....|.+++.++||+.+.+...|..|++++.........+.. ..+|+
T Consensus 341 lDg----------------n~~~~W~g---vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise--~~~it 399 (519)
T KOG0293|consen 341 LDG----------------NILGNWEG---VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE--EQPIT 399 (519)
T ss_pred CCc----------------chhhcccc---cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc--cCcee
Confidence 982 22222222 1235699999999999999999999999999987554433433 35799
Q ss_pred eeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEE--ec----CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 365 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF----GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~--s~----~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
+...|.++ .++.... .+.+||.+..+++....||..+-+.+ .| .+.++|||.|+.|++|+...+..
T Consensus 400 s~~iS~d~----k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl- 474 (519)
T KOG0293|consen 400 SFSISKDG----KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL- 474 (519)
T ss_pred EEEEcCCC----cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce-
Confidence 99999998 5554332 89999999888888778887654222 23 35789999999999999766554
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcC-CCCEEEEEeCCCeE-EEEcc
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp-dG~~LAsgg~dG~i-lwd~~ 491 (1134)
...+.||...|++|+++| |-.++|+||+||+| +|...
T Consensus 475 -------------------l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 475 -------------------LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred -------------------eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 567889999999999999 56789999999999 99764
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=209.70 Aligned_cols=242 Identities=13% Similarity=0.064 Sum_probs=205.3
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+.+|...|.+|.|+..|.+++++++|=.+.+|+...+- +++... ..+...+.+++|-|.|..|++++.|.+|+.|
T Consensus 146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~----~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~W 220 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF----RCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAW 220 (406)
T ss_pred hhccccceeEEEEecCccEEEecCCccchhheeHHHHH----HHHHHh-cCcccceeeEEEEecCCeeeecccccceeEE
Confidence 55778889999999999999999999999999986531 111111 0123567899999999999999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
+++ +|.+++++.+ |...|..++.+.||..+|+++.|.++++|-+.++++...+++| ..+|
T Consensus 221 e~~---------------tg~cv~t~~~----h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~v 280 (406)
T KOG0295|consen 221 ECD---------------TGYCVKTFPG----HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPV 280 (406)
T ss_pred ecc---------------cceeEEeccC----chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccce
Confidence 999 9999999988 9999999999999999999999999999999999888888887 6688
Q ss_pred eeeEEcCCCC-----------CCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEe
Q 001165 364 SSPIVKPNQD-----------CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYA 426 (1134)
Q Consensus 364 ~sv~~sp~~~-----------~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~ 426 (1134)
-+++|-|... ...+.+.+|+ ++++||+.++.+++.+.||.+.| ++|+| |+.++|...|+++++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 8888866531 1114677777 99999999999999999999999 78888 999999999999999
Q ss_pred eeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 427 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 427 w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
||+..... -.+...|..-|+++.|..+--|+++|+-|..+ +|..
T Consensus 361 wdl~~~~c--------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNLQC--------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccee--------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99876544 23444677789999999999999999999999 8864
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=1.2e-20 Score=202.23 Aligned_cols=243 Identities=14% Similarity=0.154 Sum_probs=188.6
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|+..|+++.||.+|.++|++.-+|.+.+|..+.+...-. +. ...+++.=+.|+|.+..++.|+.||.+-+
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~--~~----~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK--LD----QEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE--ee----cccCceEEEEecccccEEEeecCCCcEEE
Confidence 4678999999999999999999999999999999876443211 10 12367778899999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCc
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
|.+. ++...+.+.| |..++++=.|.|||+++++|+.||+|++|+..+++.++.+.+.....
T Consensus 175 w~ip---------------~~~~~kv~~G----h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 175 WQIP---------------SQALCKVMSG----HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred EECC---------------CcceeeEecC----CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCc
Confidence 9998 5555666666 99999999999999999999999999999999999999987532334
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecC--------CCccE--EEEec----CCEEEeeecCCcEE
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG--------SSERV--LIFSF----GKCCLNRGVSGMTY 425 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~--------h~~~v--~~~s~----~k~l~S~s~d~ti~ 425 (1134)
...+.++..+ ..+.+|. .+.+-+..+++.+....+ +...+ +.+.+ -+..+.|+.||++.
T Consensus 236 ~~~~~~~~~~----~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~ 311 (399)
T KOG0296|consen 236 LPCISLNLAG----STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIA 311 (399)
T ss_pred CCcccccccc----ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEE
Confidence 5566666555 5555554 455555566666665542 22222 22222 45678899999999
Q ss_pred eeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE
Q 001165 426 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 496 (1134)
Q Consensus 426 ~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk 496 (1134)
+||+.... +.....|..+|..+-|-+ -.+|++++.+|.+ .||.++|.-+
T Consensus 312 iyD~a~~~---------------------~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 312 IYDLAAST---------------------LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred EEecccch---------------------hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 99975543 344567888899999987 7899999999999 9999999754
No 52
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=7.8e-21 Score=196.00 Aligned_cols=299 Identities=14% Similarity=0.183 Sum_probs=199.0
Q ss_pred CCcee--EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE
Q 001165 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 20 ~~~~i--v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l 96 (1134)
|+.|+ |.++.+|.||.+++ |.+..+|... .+..+|.+.. |.|.+-++...-|++.++++++|.+++|||+
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGty~G------HtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGTYDG------HTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEec-CCceeeeecC------CCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 77888 88999999988876 6699999995 6778898864 4688899999999999999999999999999
Q ss_pred EecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCc
Q 001165 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1134)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~ 176 (1134)
..+. .+.....+. .+....|+.+|..+++.+.+- + +..
T Consensus 82 ~tGk-~la~~k~~~---------------------~Vk~~~F~~~gn~~l~~tD~~-m------g~~------------- 119 (327)
T KOG0643|consen 82 ETGK-QLATWKTNS---------------------PVKRVDFSFGGNLILASTDKQ-M------GYT------------- 119 (327)
T ss_pred CCCc-EEEEeecCC---------------------eeEEEeeccCCcEEEEEehhh-c------Ccc-------------
Confidence 8752 221100000 011233444444444443211 1 000
Q ss_pred cccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc----cc-cceeccc
Q 001165 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL----KL-AEFIKID 251 (1134)
Q Consensus 177 ~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~----~~-~~~~~~~ 251 (1134)
+.+.++++..... +. ...+.
T Consensus 120 -----------------------------------------------------~~v~~fdi~~~~~~~~s~ep~~kI~-- 144 (327)
T KOG0643|consen 120 -----------------------------------------------------CFVSVFDIRDDSSDIDSEEPYLKIP-- 144 (327)
T ss_pred -----------------------------------------------------eEEEEEEccCChhhhcccCceEEec--
Confidence 1111222211000 00 00111
Q ss_pred ccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCE
Q 001165 252 KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSA 331 (1134)
Q Consensus 252 ~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~ 331 (1134)
.....++.+-|.|-++.|++|..||.|..||+. +|+.+.. ....|...|+.+++|||..+
T Consensus 145 --t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~---------------~g~~~v~---s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 145 --TPDSKITSALWGPLGETIIAGHEDGSISIYDAR---------------TGKELVD---SDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred --CCccceeeeeecccCCEEEEecCCCcEEEEEcc---------------cCceeee---chhhhccccccccccCCcce
Confidence 123678899999999999999999999999999 5533322 12248999999999999999
Q ss_pred EEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEec
Q 001165 332 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 411 (1134)
Q Consensus 332 Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~ 411 (1134)
+++|+.|.+-++||+.+-.++.++.. ..+|++.+++|.. +.++-|+ |+--+- |..
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aaisP~~----d~VilgG---------GqeA~d-------VTT--- 259 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAISPLL----DHVILGG---------GQEAMD-------VTT--- 259 (327)
T ss_pred EEecccCccceeeeccceeeEEEeee--cccccceeccccc----ceEEecC---------Cceeee-------eee---
Confidence 99999999999999999888888876 4689999999986 4444332 111000 000
Q ss_pred CCEEEeeecCC--cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 412 GKCCLNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 412 ~k~l~S~s~d~--ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
|....| -.+.+++...+. ...+++|-+||+++||+|||+..++||.||.+ +.
T Consensus 260 -----T~~r~GKFEArFyh~i~eEE--------------------igrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 260 -----TSTRAGKFEARFYHLIFEEE--------------------IGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred -----ecccccchhhhHHHHHHHHH--------------------hccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 000000 012222222222 45688999999999999999999999999999 76
Q ss_pred EccC
Q 001165 489 DIRQ 492 (1134)
Q Consensus 489 d~~s 492 (1134)
-...
T Consensus 315 ~Fd~ 318 (327)
T KOG0643|consen 315 HFDS 318 (327)
T ss_pred Eecc
Confidence 5543
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=4.4e-20 Score=193.60 Aligned_cols=271 Identities=13% Similarity=0.145 Sum_probs=198.5
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
+.+.|.++.|+|+|.++|+|+.|..|.+|++.. .-+...++++ |+|+|..+.|++||+.+.+
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--------------dceN~~~lkg----HsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG--------------DCENFWVLKG----HSGAVMELHGMRDGSHILS 107 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccc--------------cccceeeecc----ccceeEeeeeccCCCEEEE
Confidence 347899999999999999999999999999763 2334445556 9999999999999999999
Q ss_pred EECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec
Q 001165 335 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF 411 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~ 411 (1134)
++.|.+++.||+.+++....+++| .+-|+++.-+.-+ .+.+.||+ ++++||.+..+.+.+... .-++.++.|
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f 182 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF 182 (338)
T ss_pred ecCCceEEEEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe
Confidence 999999999999999999999988 6778887743333 15666777 999999998777666533 445666666
Q ss_pred ---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-E
Q 001165 412 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 487 (1134)
Q Consensus 412 ---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-l 487 (1134)
+..+.+|+.|+.+++||+.+.+- ...+.||..+|+.++.||+|.++.+-+-|.++ +
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred cccccceeeccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEE
Confidence 67888999999999999876554 45677999999999999999999999999999 9
Q ss_pred EEcc----CCc-EEEeCCccceeeeEEEEEEeeCC-EEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEE---
Q 001165 488 YDIR----QKK-WRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV--- 558 (1134)
Q Consensus 488 wd~~----sg~-Wk~F~~~~~e~~~~v~gl~W~~~-~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~--- 558 (1134)
||++ +.| .+.|....+..+.+.....|.++ ..+.++ +.+..+.+|+.. .....+.+|+.-..
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag----s~dr~vyvwd~~-----~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG----SADRFVYVWDTT-----SRRILYKLPGHYGSVNE 313 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc----cccceEEEeecc-----cccEEEEcCCcceeEEE
Confidence 9985 223 45555444433333446778654 233332 334556677653 12233445553322
Q ss_pred --EEecCCEEEEEEcCCeEEE
Q 001165 559 --MDVYEDYILVTYRPFDVHI 577 (1134)
Q Consensus 559 --l~~~~d~llv~~~d~~i~l 577 (1134)
+.+....++...+|..|.+
T Consensus 314 ~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 314 VDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eeecCCCcEEEEeccCceeEe
Confidence 2334444555555555544
No 54
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.3e-19 Score=206.72 Aligned_cols=215 Identities=18% Similarity=0.171 Sum_probs=151.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC---CCCEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP---DNSAFA 333 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~~La 333 (1134)
..+.|+++||+|+.||+|..-|+++||++. .-+....+. .|...|.|+.||- ..++||
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq---------------~l~~~~~~e----AHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQ---------------ELEYTCFME----AHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEeh---------------hhhhhhhee----cccceeEEEeecCchhhhHhhh
Confidence 457899999999999999999999999998 222222333 3999999999986 456999
Q ss_pred EEECCCcEEEEecCC-CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCC----ceEEEEecC--CCcc
Q 001165 334 VGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYG----YRLYAIEEG--SSER 405 (1134)
Q Consensus 334 sg~~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~----~~l~~~~~~--h~~~ 405 (1134)
+|+.|+-|.|+|+.. -.++.++.+| .+.|+++.|--++- ..+++.+|. +...+.... +.++..... ....
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~H-SssITsvKFa~~gl-n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGH-SSSITSVKFACNGL-NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred hccCCceEEEEecccccchhhhhccc-ccceeEEEEeecCC-ceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 999999999999964 3567888888 78899999976652 223444444 444444332 444332110 1223
Q ss_pred E--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCC--cc-----------------------cccccccccee
Q 001165 406 V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT--DE-----------------------LKILHLNLPVS 457 (1134)
Q Consensus 406 v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~--~~-----------------------~~w~~~~~~~~ 457 (1134)
+ +.+.+ .+.+++++.|..|+++++..+.....+-...+. .- +......+..+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 4 44555 788888888888888888766654333222211 00 01223344567
Q ss_pred eccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 458 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 458 ~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
..||...|+.+-|++|-++|.+++.||.| +|.+..
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 78999999999999999999999999999 998854
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.2e-21 Score=202.23 Aligned_cols=235 Identities=14% Similarity=0.185 Sum_probs=187.9
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
+.+|.++.||.|..++|+++-||++.+|.+..+. ++......|...++|+.||.|+..+.+++.|.+||+.-++
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~-----ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK- 336 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ-----CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK- 336 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecch-----HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-
Confidence 4568899999999999999999999999986532 2221122356889999999999999999999999999999
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC-CCCceeee
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSP 366 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~sv 366 (1134)
+|++++.++| |+.-|+...|++||.++++++.||+|+||+..+..|+.|++.. ...+|+++
T Consensus 337 --------------SGK~LKEfrG----HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv 398 (508)
T KOG0275|consen 337 --------------SGKCLKEFRG----HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSV 398 (508)
T ss_pred --------------cchhHHHhcC----ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeE
Confidence 8999999998 9999999999999999999999999999999999999998763 24578888
Q ss_pred EEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecC-CC--cc-E-EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 367 IVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG-SS--ER-V-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~-h~--~~-v-~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
..-|.+++ ..+++.- ++.+-+..| +++..+.. .. +. | ..++| |..+...+.|+..+.+.+..|..
T Consensus 399 ~~~PKnpe--h~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L---- 471 (508)
T KOG0275|consen 399 ILLPKNPE--HFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL---- 471 (508)
T ss_pred EEcCCCCc--eEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce----
Confidence 88887632 2333221 666667654 55555432 11 12 3 56788 89999999999999888777664
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
..++..|...|-.++-.|-.+.||+=+.||+. +|.
T Consensus 472 ----------------E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ----------------ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ----------------eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 35566677777788999999999999999999 884
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.86 E-value=9.1e-20 Score=196.36 Aligned_cols=289 Identities=16% Similarity=0.125 Sum_probs=215.1
Q ss_pred cceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccE
Q 001165 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1134)
Q Consensus 132 ~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V 211 (1134)
+.-|.++...++.|++|+-||.+++|+-.|+... ...+|.++|
T Consensus 105 dDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~-------------------------------------~~~Ght~~i 147 (423)
T KOG0313|consen 105 DDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIK-------------------------------------TIVGHTGPI 147 (423)
T ss_pred hhhhhhhcccCceEEEeecCCeeEEEecCCceEE-------------------------------------EEecCCcce
Confidence 3455666556789999999999998765554211 234677777
Q ss_pred EEEEE---cCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 212 IWLEL---CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 212 ~~i~f---sp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
.++++ ++....|++++.|.++.+|..+........... ...|...+-||+.+++|..+++|+.|.++++|+....
T Consensus 148 k~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~--~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 148 KSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV--CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred eeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH--hcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 76655 333447999999999999998765432211111 0123466789999999999999999999999993221
Q ss_pred c-------ccee-e--eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC
Q 001165 289 A-------SLIR-T--VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 358 (1134)
Q Consensus 289 ~-------~~~~-~--l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h 358 (1134)
. +..+ . -.-...+++.++-++.| |+++|.+|.|++ ...+.|++.|.+|++||+.++.+..++.+
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G----Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~- 299 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEG----HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT- 299 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecc----cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-
Confidence 1 0000 0 00111225677888888 999999999998 67889999999999999999999888876
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCce---EEEEecCCCccE--EEEec--CCEEEeeecCCcEEeee
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~---l~~~~~~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~ 428 (1134)
....+++..+|.. ..+++|+ .+++||++++. ....+.||++-| +..+| -..++|++.|+++++||
T Consensus 300 -~ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 300 -NKSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred -CcceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 4578999999977 8889888 78999997642 234557898877 44455 44788999999999999
Q ss_pred eeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 429 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 429 l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
+...... ...+.+|+..|.++.++ +|.++++||.|..+ ++.-
T Consensus 375 vRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 375 VRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 8876642 24567899999999998 78899999999999 7753
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.8e-21 Score=202.66 Aligned_cols=276 Identities=13% Similarity=0.194 Sum_probs=206.9
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceeccc-c-cCCCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-K-ELGSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~-~-~~~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
...+.++.+.+..|||||+++++++-||-+.+|+...+.........++ . ......+.|+.||.|...+|+|+.||.|
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 4457788999999999999999999999999999865443221111110 0 0124678899999999999999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
++|.+. +|.+++.+. ..|+..|+|++||.|+..+.+++.|.++++..+.+|+++..++|| .
T Consensus 288 KvWri~---------------tG~ClRrFd---rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-s 348 (508)
T KOG0275|consen 288 KVWRIE---------------TGQCLRRFD---RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-S 348 (508)
T ss_pred EEEEEe---------------cchHHHHhh---hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-c
Confidence 999999 888888754 369999999999999999999999999999999999999999998 7
Q ss_pred CceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCC--ccE---EEEec-CCEEEeeecCCcEEeeeeee
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS--ERV---LIFSF-GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~--~~v---~~~s~-~k~l~S~s~d~ti~~w~l~~ 431 (1134)
+.|+...|.++| ..+++++ ++++|+..+.+++.+++... -.| .-+.- -..++..+..+++.+-++ +
T Consensus 349 Syvn~a~ft~dG----~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-q 423 (508)
T KOG0275|consen 349 SYVNEATFTDDG----HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-Q 423 (508)
T ss_pred ccccceEEcCCC----CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-c
Confidence 899999999999 7888776 99999999999988775422 223 22211 345556666666665442 2
Q ss_pred CCCeEEEeecCCCccccccccccceeec---cCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeee
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKI 507 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~---~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~ 507 (1134)
|.- ..++. ...+..-+.+.||.|.++...|.||.. .+++.+|+...+-.. +|+
T Consensus 424 GQv--------------------VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEk-- 480 (508)
T KOG0275|consen 424 GQV--------------------VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEK-- 480 (508)
T ss_pred ceE--------------------EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-ccc--
Confidence 221 12221 122345578899999999999999999 999999976655332 343
Q ss_pred EEEEEEeeCCEEEEEEEe
Q 001165 508 QSKGLLWLGKIIVVCNYI 525 (1134)
Q Consensus 508 ~v~gl~W~~~~lv~~~~~ 525 (1134)
.+.|+.-.++--+.+.|.
T Consensus 481 dvIGl~HHPHqNllAsYs 498 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYS 498 (508)
T ss_pred cccccccCcccchhhhhc
Confidence 256766665544444454
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.8e-20 Score=185.00 Aligned_cols=251 Identities=18% Similarity=0.236 Sum_probs=197.2
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
.+.+..+.||-+|++..+++.|.+||+||.. .|.++++..| |...|..++-+.|...+|+|
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~---------------rg~liktYsg----hG~EVlD~~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL---------------RGALIKTYSG----HGHEVLDAALSSDNSKFASC 77 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeeccc---------------ccceeeeecC----CCceeeeccccccccccccC
Confidence 4678899999999999999999999999998 8899999888 99999999999999999999
Q ss_pred ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC--ceEEEEecCCCccEEEEe
Q 001165 336 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFS 410 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~--~~l~~~~~~h~~~v~~~s 410 (1134)
+.|+.+.+||+.+++....+++| .+.|+.++|+.+. ..++||+ ++++||-++ .+.+.++....+.|..+.
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred CCCceEEEEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 99999999999999999999998 7899999998776 7888988 999999755 466777766677887777
Q ss_pred c-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 411 F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 411 ~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
. ...+++|+.||+++.+|+..|.. -..|.+| ||++++||+||+...+++-|+++ +-
T Consensus 153 v~~heIvaGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 153 VAEHEIVAGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred ecccEEEeeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeec
Confidence 7 77889999999999999987765 3456665 79999999999999999999999 99
Q ss_pred EccCCcEE-EeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEE
Q 001165 489 DIRQKKWR-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD 560 (1134)
Q Consensus 489 d~~sg~Wk-~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~ 560 (1134)
|-.+|+.- .+.. .+.+++......-..+..|++| +.+..+-+|+.. +..++...+.++.++..+
T Consensus 211 Dk~tGklL~sYkG-hkn~eykldc~l~qsdthV~sg----SEDG~Vy~wdLv---d~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 211 DKETGKLLKSYKG-HKNMEYKLDCCLNQSDTHVFSG----SEDGKVYFWDLV---DETQISKLSVVSTVIVTD 275 (307)
T ss_pred ccchhHHHHHhcc-cccceeeeeeeecccceeEEec----cCCceEEEEEec---cceeeeeeccCCceeEEe
Confidence 99998531 1211 1112233332222233333332 345667888763 334455555666554443
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=4.8e-21 Score=195.43 Aligned_cols=239 Identities=15% Similarity=0.133 Sum_probs=193.3
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|++.|.+...+.+-...|++..|=+..+|+.-.++....-. +..-+..++|+.|...|.+|+.+..+||
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-------hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-------HKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-------hhheeeeEEecccchhhhccchHHHhhh
Confidence 366899999999998888888999999999999876544322111 2234568999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCc
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
||++.... +...+. +|++.|..+-|....+++.|+.+|++||+||..++..++++.- ..+
T Consensus 127 fdln~p~A--------------pp~E~~----ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~ 186 (334)
T KOG0278|consen 127 FDLNRPKA--------------PPKEIS----GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSP 186 (334)
T ss_pred hhccCCCC--------------Cchhhc----CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCC
Confidence 99983221 112233 4999999999999999999999999999999999999999876 458
Q ss_pred eeeeEEcCCCCCCcceEE--EcceeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEE
Q 001165 363 ISSPIVKPNQDCKYEPLM--SGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~--sgs~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~ 437 (1134)
|+++.+++++ +++. -|+++++||+.+..++...+- ...| ..++| ....+.|+.|.-++.+|..++++
T Consensus 187 VtSlEvs~dG----~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE--- 258 (334)
T KOG0278|consen 187 VTSLEVSQDG----RILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE--- 258 (334)
T ss_pred CcceeeccCC----CEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCce---
Confidence 9999999999 6554 366999999999887765432 2233 45667 55678899999999999988887
Q ss_pred EeecCCCccccccccccceee-ccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 438 VVQSEDTDELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~-~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
...| ++|-+||-|+.|||||..-|+|+.||++ +|.+..+
T Consensus 259 -----------------i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 259 -----------------IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred -----------------eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 3344 7999999999999999999999999999 9998765
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.5e-20 Score=202.59 Aligned_cols=237 Identities=15% Similarity=0.231 Sum_probs=182.9
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
......|.++.|||.--.=.++++.-++.+++........ .+.. ....+.++.|-.||+++|.|...|.|+|||
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k--~~sr----Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK--TFSR----FKDVVYSVDFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh--hHHh----hccceeEEEeecCCeEEEccCCcCcEEEec
Confidence 3456789999999976544444555678887765432211 1110 126788999999999999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC-CCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD-G~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
++ +...++++.. |+.+|..+.|+|+ +..+++|++|+.+++||+.+......+.+| ++.|
T Consensus 97 ~k---------------~r~iLR~~~a----h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-tDYV 156 (487)
T KOG0310|consen 97 MK---------------SRVILRQLYA----HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH-TDYV 156 (487)
T ss_pred cc---------------cHHHHHHHhh----ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC-ccee
Confidence 77 4445555555 9999999999995 557888899999999999998876678887 8899
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE---EEEecCCEEEeeecCCcEEeeeeeeCCCeEE
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIFSFGKCCLNRGVSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v---~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~ 437 (1134)
.+.+++|..+ ..++||+ ++++||.....-....-.|..+| ..++.|..++|++.. .+++||+..|...
T Consensus 157 R~g~~~~~~~---hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql-- 230 (487)
T KOG0310|consen 157 RCGDISPAND---HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL-- 230 (487)
T ss_pred EeeccccCCC---eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee--
Confidence 9999999762 5788998 99999997753333334666666 444447788877654 7999998877662
Q ss_pred EeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 438 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
+.....|+..|+|+++..+|+.|.+||-||.+ +||+
T Consensus 231 -----------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 231 -----------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred -----------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 45556699999999999999999999999999 9984
No 61
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=3.9e-19 Score=212.36 Aligned_cols=205 Identities=12% Similarity=0.130 Sum_probs=159.4
Q ss_pred CCCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CEE
Q 001165 255 GSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SAF 332 (1134)
Q Consensus 255 ~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~L 332 (1134)
|.+.+++++|+| ++++||+|+.||+|++||+.+..... . ..+.+.++.+ |.+.|.+++|+|++ +.|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-~-------~~~~l~~L~g----H~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-N-------ISDPIVHLQG----HTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-c-------cCcceEEecC----CCCcEEEEEeCcCCCCEE
Confidence 457899999999 88999999999999999997421100 0 1234555666 99999999999986 699
Q ss_pred EEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE---
Q 001165 333 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--- 406 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--- 406 (1134)
++|+.|++|+|||+.++....++.+| ...|.+++|+|++ ..+++|+ ++++||+++++.+....+|.+..
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 99999999999999998888888887 6789999999998 8888877 89999999999888877886543
Q ss_pred EEEec-CCEEEeee----cCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeec-cCCCceEEEEEcCCCCEEEEE
Q 001165 407 LIFSF-GKCCLNRG----VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVA 480 (1134)
Q Consensus 407 ~~~s~-~k~l~S~s----~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~-~h~~~V~~va~SpdG~~LAsg 480 (1134)
..+.+ +..+++++ .|+++++||+......+ .... .+...+....|++||++|++|
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-------------------~~~~~d~~~~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-------------------STVDLDQSSALFIPFFDEDTNLLYIG 277 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-------------------eEeccCCCCceEEEEEcCCCCEEEEE
Confidence 33444 45555543 47899999986544311 1111 233356667899999999999
Q ss_pred eC-CCeE-EEEccCCcE
Q 001165 481 GL-HGLI-LYDIRQKKW 495 (1134)
Q Consensus 481 g~-dG~i-lwd~~sg~W 495 (1134)
|. ||.| +||+.++..
T Consensus 278 gkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 278 SKGEGNIRCFELMNERL 294 (493)
T ss_pred EeCCCeEEEEEeeCCce
Confidence 85 9999 999988764
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2.9e-19 Score=184.06 Aligned_cols=259 Identities=14% Similarity=0.184 Sum_probs=188.0
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCC-ceEEEEEeCCCEEEEEEEEecC
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD-g~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
+-|+++.||..+|+++ ++++.+|+++..+. .....--.+.+.+.+++|.|- ...+|++++|.+|++||+..+.
T Consensus 24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred eEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 3489999999999976 67999999973211 111111113346788899774 3478999999999999997642
Q ss_pred cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 101 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
...... .. ......+++|+|++++++..|..|..++ .......
T Consensus 99 ~~~~i~---------------------~~-~eni~i~wsp~g~~~~~~~kdD~it~id--~r~~~~~------------- 141 (313)
T KOG1407|consen 99 CTARIE---------------------TK-GENINITWSPDGEYIAVGNKDDRITFID--ARTYKIV------------- 141 (313)
T ss_pred EEEEee---------------------cc-CcceEEEEcCCCCEEEEecCcccEEEEE--eccccee-------------
Confidence 111110 00 0112457788999999999988876543 2211111
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeE
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV 260 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1134)
........+..+.|+-++++|+..+..|.+.++...... ..+.+.+ |.....
T Consensus 142 ----------------------~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk--pv~si~A----H~snCi 193 (313)
T KOG1407|consen 142 ----------------------NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK--PVQSIKA----HPSNCI 193 (313)
T ss_pred ----------------------ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc--ccccccc----CCcceE
Confidence 111234567788999888998888888999998876433 3334432 557788
Q ss_pred EEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCc
Q 001165 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 340 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~ 340 (1134)
|+.|+|+|+++|+|++|..|.+||++ .--+++.+.. +.=||..|+||.||++||+|++|..
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~---------------ELiC~R~isR----ldwpVRTlSFS~dg~~lASaSEDh~ 254 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVD---------------ELICERCISR----LDWPVRTLSFSHDGRMLASASEDHF 254 (313)
T ss_pred EEEECCCCceEeeccccceeeccChh---------------Hhhhheeecc----ccCceEEEEeccCcceeeccCccce
Confidence 99999999999999999999999998 3334445444 7778999999999999999999999
Q ss_pred EEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 341 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 341 I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
|-|=++.+|..+..++- .++..+++|+|..
T Consensus 255 IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 255 IDIAEVETGDRVWEIPC--EGPTFTVAWHPKR 284 (313)
T ss_pred EEeEecccCCeEEEeec--cCCceeEEecCCC
Confidence 99999999887777754 6688999999986
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=201.35 Aligned_cols=297 Identities=10% Similarity=0.067 Sum_probs=201.3
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCccee-cCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv 147 (1134)
.+..+++-|.|..+++|+-|.+|++||.+.-.-... ...-+ +...+......+++.|+.|++
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-----------------P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-----------------PCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-----------------cccccccceeeecCCCCeEEE
Confidence 367899999999999999999999999975332111 11001 111222233455567788888
Q ss_pred EecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC-CeEEEE
Q 001165 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVL 226 (1134)
Q Consensus 148 ~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~-~~la~~ 226 (1134)
.+......+++-||.....+. -+.|. ..+ + ....+|...+++..|.|+. +.|.++
T Consensus 232 vsg~aqakl~DRdG~~~~e~~-----------------KGDQY--I~D---m--~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFS-----------------KGDQY--IRD---M--YNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred EecCcceeEEccCCceeeeee-----------------ccchh--hhh---h--hccCCceeeeeccccccCcccceEEe
Confidence 888887777777765433321 11110 000 0 1245788899999999997 578889
Q ss_pred EcCCeEEEEEeccCCccccceeccccc-CCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceE
Q 001165 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREV 305 (1134)
Q Consensus 227 ~sDG~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~ 305 (1134)
+.||++++|+++.... +.+-+.+... ...-.++.++|||+|++||.|+.||.|.+|+....+...
T Consensus 288 s~DgtlRiWdv~~~k~-q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p------------- 353 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKS-QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP------------- 353 (641)
T ss_pred cCCCcEEEEecCCchh-heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc-------------
Confidence 9999999999976542 2222221100 112457899999999999999999999999986322110
Q ss_pred EEEeecccCCCCc--CeEEEEECCCCCEEEEEECCCcEEEEecCC-CeeEEEecc-CCCCceeeeEEcCCCCCCcceEEE
Q 001165 306 YYTFCRYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMS 381 (1134)
Q Consensus 306 l~~l~~~~~~h~g--~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~-~~l~~tl~~-h~~~~V~sv~~sp~~~~~~~~l~s 381 (1134)
... +..+|.+ .|+||+||+||++|+|-+.|++++|||+.. .+++.+..+ ...-.-+.++|||+. +.+++
T Consensus 354 ~~~---vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~T 426 (641)
T KOG0772|consen 354 VMK---VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILT 426 (641)
T ss_pred ceE---eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEEEe
Confidence 011 1224877 899999999999999999999999999965 334444333 112245678999998 88888
Q ss_pred cc---------eeEEEeCCCceEEEEecCCCccEEE--Eec-CCEEEeeecCCcEEee
Q 001165 382 GT---------SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYAR 427 (1134)
Q Consensus 382 gs---------~i~~W~~~~~~l~~~~~~h~~~v~~--~s~-~k~l~S~s~d~ti~~w 427 (1134)
|. +..+++..+.+.+....-....|++ .+| -..+..++.||+++++
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 86 5678888888777665444555544 444 5567778888988874
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=3.9e-19 Score=214.19 Aligned_cols=247 Identities=15% Similarity=0.127 Sum_probs=190.6
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccc-----ceecccccC-------CCCCeEEEEECCCCCEEE
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA-----EFIKIDKEL-------GSGDAVCASIAPEQQILA 272 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~va~spdg~llA 272 (1134)
..|.+.|.++-|+|||.++|+|++|+-+.+|.......... .....+.|. |..++..++|+|++.++|
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 35788999999999999999999999999999873111000 011122232 568899999999999999
Q ss_pred EeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeE
Q 001165 273 VGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 352 (1134)
Q Consensus 273 sG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~ 352 (1134)
+++.|++|.+||.. +.+.++.+.+ |.+.|..+.|.|-|++|||-++|++|+||.+..-.+.
T Consensus 146 S~s~DnsViiwn~~---------------tF~~~~vl~~----H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAK---------------TFELLKVLRG----HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE 206 (942)
T ss_pred EecccceEEEEccc---------------cceeeeeeec----ccccccceEECCccCeeeeecCCceEEEEEcccceee
Confidence 99999999999999 7788888888 9999999999999999999999999999998876666
Q ss_pred EEeccC-----CCCceeeeEEcCCCCCCcceEEEcc-------eeEEEeCCCceEEEEecCCCccE--EEEec------C
Q 001165 353 STIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERV--LIFSF------G 412 (1134)
Q Consensus 353 ~tl~~h-----~~~~V~sv~~sp~~~~~~~~l~sgs-------~i~~W~~~~~~l~~~~~~h~~~v--~~~s~------~ 412 (1134)
+++.++ +..-+.-+.||||| +++++.- ++.+.+-++.+.-..+-||..++ ++|+| .
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCc----CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence 666542 22346678899999 7877643 66666666666556667888876 66766 2
Q ss_pred C------------EEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEE
Q 001165 413 K------------CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 480 (1134)
Q Consensus 413 k------------~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsg 480 (1134)
+ .+++||.|+++.+|....... +.....-.+..|..++|||||..|.++
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-------------------l~vi~~lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-------------------LFVIHNLFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCc-------------------hhhhhhhhcCceeeeeEcCCCCeEEEE
Confidence 3 567899999999998532221 001111235679999999999999999
Q ss_pred eCCCeE-EEEccCC
Q 001165 481 GLHGLI-LYDIRQK 493 (1134)
Q Consensus 481 g~dG~i-lwd~~sg 493 (1134)
+.||++ +..+..+
T Consensus 344 S~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 344 SLDGTVALIHFEEK 357 (942)
T ss_pred ecCCeEEEEEcchH
Confidence 999999 8887654
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.3e-18 Score=173.19 Aligned_cols=272 Identities=13% Similarity=0.158 Sum_probs=179.4
Q ss_pred EEEeecCeEEEEEcCC-eEEEeecCC---c--------ceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEE
Q 001165 25 IYFKVNNGLLLIASPC-HIELWSSSQ---H--------KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLH 92 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~-~l~IW~~~~---~--------~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~ 92 (1134)
|+|-|.|.|.|+++.+ +++|-..-. + .-+....+|... +.|.+.+++|||+|..||++++|.+|+
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~kh---hkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKH---HKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccc---cCccEEEEEecCccCeEEecCCCceEE
Confidence 8999999999999864 787764310 0 012344555542 568999999999999999999999998
Q ss_pred EEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeee-----CCCeEEEEecCCcEEEEecCCccccce
Q 001165 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-----DNKHMLLGLSDGSLYSISWKGEFYGAF 167 (1134)
Q Consensus 93 lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~-----d~~~llv~t~dg~v~~~~wd~~~~~~~ 167 (1134)
+.......... .+++ +. +.-+++.|..++. .+..|++....|.-.++.-|-.....+
T Consensus 115 ~l~fn~dt~~~--~g~d--------le--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 115 VLPFNADTCNA--TGHD--------LE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred EEecccccccc--cCcc--------ee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 87664321111 1111 11 2223445544332 133455544455433333332222211
Q ss_pred eccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc-ccc
Q 001165 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAE 246 (1134)
Q Consensus 168 ~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~-~~~ 246 (1134)
..+.+|.+.|.++ |+-.+-+|++++.|.++++|++...... ...
T Consensus 177 ----------------------------------~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 177 ----------------------------------HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred ----------------------------------eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 1345788888876 6777889999999999999998532210 000
Q ss_pred eecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEEC
Q 001165 247 FIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWT 326 (1134)
Q Consensus 247 ~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fS 326 (1134)
.-....-+....+++|++.|.|+++|+|-.|....+||+. .+.++..+-. |+..|.|+.||
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir---------------g~r~iq~f~p----hsadir~vrfs 282 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR---------------GGRMIQRFHP----HSADIRCVRFS 282 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee---------------CCceeeeeCC----CccceeEEEeC
Confidence 0000000113568899999999999999999999999999 6777777665 99999999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCe---e-EEEeccCCCCceeeeEEcCCC
Q 001165 327 PDNSAFAVGWKSRGLTVWSVSGCR---L-MSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 327 PDG~~Lasg~~Dg~I~vWdv~~~~---l-~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
|...++.+++.|..|++=|+.|-. + +-....| .+.+-.+.|+|.+
T Consensus 283 p~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d 331 (350)
T KOG0641|consen 283 PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD 331 (350)
T ss_pred CCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence 999999999999999999998732 1 1122223 5555566666654
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.1e-19 Score=204.96 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=185.8
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
...|+++.|+++|+.+++++.+|.+.+|+...... ..... .+...+-|++|+ ...+.+|+.||.|..+|+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC------CcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 67899999999999999999999999999854321 11111 134788899999 6689999999999999998
Q ss_pred ccccceeeeeeeccCcceEEE-EeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceee
Q 001165 287 ESASLIRTVSLYDWGMREVYY-TFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~-~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
. .+... ++.+ |...|..++|++||++||+|+.|+.+.|||........++.+| .+.|.+
T Consensus 289 ~---------------~~~~~~~~~~----H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~aAVKA 348 (484)
T KOG0305|consen 289 I---------------SQHVVSTLQG----HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-TAAVKA 348 (484)
T ss_pred c---------------chhhhhhhhc----ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc-ceeeeE
Confidence 2 22211 2444 9999999999999999999999999999999888888888888 889999
Q ss_pred eEEcCCCCCCcceEEEcc-----eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEe--eecCCcEEeeeeeeCCCe
Q 001165 366 PIVKPNQDCKYEPLMSGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN--RGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs-----~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S--~s~d~ti~~w~l~~~~~~ 435 (1134)
++|+|-.. ..|++|+ ++++|+..+++.+..... ..+| +.++. .+.+++ |-.++.+.+|...+...
T Consensus 349 ~awcP~q~---~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~- 423 (484)
T KOG0305|consen 349 LAWCPWQS---GLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL- 423 (484)
T ss_pred eeeCCCcc---CceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce-
Confidence 99999763 6788876 899999999988776533 3566 44455 444444 33456788888655322
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
...+.+|+..|.++++||||.++++|+.|.++ +|++-.
T Consensus 424 -------------------~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 424 -------------------VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -------------------eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 56788999999999999999999999999999 888744
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.83 E-value=2.8e-19 Score=192.60 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=205.6
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEE---CCCCCEEEEeeeCCeEEE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI---APEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~---spdg~llAsG~~dg~V~l 282 (1134)
.|+.-|.++.-. ++.+.+++-||.+++|+..+....+..++ .+.+.++++ ++....+++|+.|.++++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Gh-------t~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGH-------TGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecC-------CcceeeeEEEecCCccceEEEecCCceEEE
Confidence 455666666555 67899999999999999876554443332 345554443 333347999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC---------------
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------- 347 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~--------------- 347 (1134)
|.++........ +.. ..+|.++|.+|+-.+||.+++||+.|.++++|+..
T Consensus 174 w~~~~~~~~~~~-----------~~~----~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 174 WKWNVGENKVKA-----------LKV----CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred EEecCchhhhhH-----------HhH----hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 999843221111 111 11499999999999999999999999999999931
Q ss_pred ----------CCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEE--EEec-
Q 001165 348 ----------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF- 411 (1134)
Q Consensus 348 ----------~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~--~~s~- 411 (1134)
.+..+.++.|| ..+|.++.|++. ..+.|++ +++.||++++++.....+. ..+. ...+
T Consensus 239 k~~~~~~~~~~r~P~vtl~GH-t~~Vs~V~w~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~ 311 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGH-TEPVSSVVWSDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPL 311 (423)
T ss_pred hhhhhhhcccccCceEEeccc-ccceeeEEEcCC-----CceEeecccceEEEEEeecccceeeeecC-cceeEeecccc
Confidence 12346678887 889999999985 4556666 9999999999887776553 3343 3344
Q ss_pred CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC-CCEEEEEeCCCeE-EEE
Q 001165 412 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 412 ~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd-G~~LAsgg~dG~i-lwd 489 (1134)
.+.+++||.|..+++||-..++..+ ...+|.+|+..|.++.+||. -..|++|+.||++ +||
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~-----------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSV-----------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCce-----------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 7789999999999999988776643 24679999999999999995 5677899999999 999
Q ss_pred ccCCcEEEeCCccceeeeEEEEEEeeCCE-EEEEEEecCCCeeEEEEEeCC
Q 001165 490 IRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 490 ~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~-lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+++-+=.+|.-..|+ -.|..+.|++.. ++.| +.+..||+|...
T Consensus 375 vRS~k~plydI~~h~--DKvl~vdW~~~~~IvSG-----GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 375 VRSTKAPLYDIAGHN--DKVLSVDWNEGGLIVSG-----GADNKLRIFKGS 418 (423)
T ss_pred eccCCCcceeeccCC--ceEEEEeccCCceEEec-----cCcceEEEeccc
Confidence 998753555544443 357889999875 4555 556788988653
No 68
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=1.7e-18 Score=206.92 Aligned_cols=206 Identities=14% Similarity=0.202 Sum_probs=156.3
Q ss_pred cCCCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccc--cceecccccCCCCCeEEEEECCCC-CEEEEeeeCCe
Q 001165 204 KFPISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKL--AEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGV 279 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~ 279 (1134)
+.+|.+.|.+++|+| +++.+++++.||+|.+|++....... ...+.. ...|...+.+++|+|++ .+||+|+.|++
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 568899999999999 78899999999999999986532110 000110 01245778999999986 69999999999
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCC
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 359 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~ 359 (1134)
|+|||+. +++.+..+.+ |.+.|.+++|+|||+.||+|+.||+|+|||+.++..+.++.+|.
T Consensus 150 VrIWDl~---------------tg~~~~~l~~----h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 150 VNVWDVE---------------RGKAVEVIKC----HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred EEEEECC---------------CCeEEEEEcC----CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 9999999 6777777776 99999999999999999999999999999999888888888874
Q ss_pred CCceeeeEEcCCCCCCcceEEE-cc------eeEEEeCCCce-EEEEecCCC-ccE--EEEec-CCEEEeee-cCCcEEe
Q 001165 360 LSSISSPIVKPNQDCKYEPLMS-GT------SMMQWDEYGYR-LYAIEEGSS-ERV--LIFSF-GKCCLNRG-VSGMTYA 426 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~s-gs------~i~~W~~~~~~-l~~~~~~h~-~~v--~~~s~-~k~l~S~s-~d~ti~~ 426 (1134)
...+..+.|.+++ ..+++ |. .+++||+.... .+.....+. ..+ ..+++ ++.+++++ .|++|++
T Consensus 211 ~~~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 211 SAKSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred CCcceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 4445667788876 55554 31 69999997643 333322222 223 34566 67777776 5999999
Q ss_pred eeeeeCC
Q 001165 427 RQVIYGE 433 (1134)
Q Consensus 427 w~l~~~~ 433 (1134)
|++..+.
T Consensus 287 wdl~~~~ 293 (493)
T PTZ00421 287 FELMNER 293 (493)
T ss_pred EEeeCCc
Confidence 9986544
No 69
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=2e-17 Score=183.48 Aligned_cols=408 Identities=15% Similarity=0.141 Sum_probs=252.6
Q ss_pred CccccCCcccccCCCCCCCCC-ceeEEEeecC-eEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCC
Q 001165 1 MYMAYGWPQVIPLEQGLCPSS-QQIIYFKVNN-GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD 78 (1134)
Q Consensus 1 m~~~~gwp~~~~~~~~~~~~~-~~iv~fS~dg-~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD 78 (1134)
|.-++-|||--.+++-.|..+ .....|-|-+ .++.+.+.+.+..|+.++. .. .......+.-+ .-.+.+++|.|+
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~-~l-~k~~~~fek~e-kk~Vl~v~F~en 257 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGG-SL-VKRQGIFEKRE-KKFVLCVTFLEN 257 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCC-ce-EEEeecccccc-ceEEEEEEEcCC
Confidence 445678999765554433221 2336788875 5888899999999998743 22 11111111111 245899999999
Q ss_pred ceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeC-CCeEEEEecCCcEEEE
Q 001165 79 TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSI 157 (1134)
Q Consensus 79 g~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d-~~~llv~t~dg~v~~~ 157 (1134)
|. ++++.++|+|.||+.... ++.. . ...+++.|.++..- ...|++|..|..|..
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~--~~~k-------------------~--~~aH~ggv~~L~~lr~GtllSGgKDRki~~- 312 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTN--RISK-------------------Q--VHAHDGGVFSLCMLRDGTLLSGGKDRKIIL- 312 (626)
T ss_pred CC-EEeecCCceEEEEeCCCc--eEEe-------------------E--eeecCCceEEEEEecCccEeecCccceEEe-
Confidence 85 578899999999998432 1110 0 01234445444332 234666777777654
Q ss_pred ecCCccccceeccccCCCccccccccccCCCccc--cccCC------CcccccccCCCcccEEEEEEcCCCCeEEEEEcC
Q 001165 158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLA--SVDTS------GAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (1134)
Q Consensus 158 ~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~--s~~~~------~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sD 229 (1134)
||........++ .|..-..++.+.-.... +. +..+. ..-......+|......++-.|+.+.+++++-|
T Consensus 313 -Wd~~y~k~r~~e-lPe~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 313 -WDDNYRKLRETE-LPEQFGPIRTVAEGKGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred -cccccccccccc-CchhcCCeeEEecCCCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 664322211111 12111222222110000 00 00000 000111234677788899999999999999999
Q ss_pred CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEe
Q 001165 230 GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTF 309 (1134)
Q Consensus 230 G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l 309 (1134)
+.+.+|+ ..... |.. .-..++.|++|+|.| .+|+|...|...|.|.+ +..+ -++
T Consensus 390 k~v~lW~-~~k~~------wt~--~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e---------------~~~l-v~~ 443 (626)
T KOG2106|consen 390 KHVRLWN-DHKLE------WTK--IIEDPAECADFHPSG-VVAVGTATGRWFVLDTE---------------TQDL-VTI 443 (626)
T ss_pred ceEEEcc-CCcee------EEE--EecCceeEeeccCcc-eEEEeeccceEEEEecc---------------ccee-EEE
Confidence 9999998 22111 110 113678899999999 99999999999999988 3222 222
Q ss_pred ecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC-CCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---ee
Q 001165 310 CRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 385 (1134)
Q Consensus 310 ~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i 385 (1134)
.. .+.++++|+|||||.+||+|+.|+.|.|+-+. +++.......++.++++.+.|++|+ +++.+-+ .+
T Consensus 444 ~~----d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~ei 515 (626)
T KOG2106|consen 444 HT----DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEI 515 (626)
T ss_pred Ee----cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC----ceEEeccCceEE
Confidence 22 36789999999999999999999999999985 4555555555444899999999999 8888755 88
Q ss_pred EEEeCCCceEEEEec-----------------C-CCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCC
Q 001165 386 MQWDEYGYRLYAIEE-----------------G-SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 444 (1134)
Q Consensus 386 ~~W~~~~~~l~~~~~-----------------~-h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~ 444 (1134)
..|.+...+.....+ + +...+ .+-+. .+.+++|...|.++++.......+
T Consensus 516 LyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r--------- 586 (626)
T KOG2106|consen 516 LYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR--------- 586 (626)
T ss_pred EEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc---------
Confidence 899665433222111 1 11111 22222 444555555566666543222221
Q ss_pred ccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 445 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 445 ~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
-.-..|.+|+.-|.+++|+-+..++.+.|.|..+ .|++
T Consensus 587 --------A~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 --------APSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred --------ccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 0125788999999999999888888888899999 8975
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.83 E-value=7.4e-20 Score=198.84 Aligned_cols=270 Identities=14% Similarity=0.127 Sum_probs=205.4
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+..|.+.+.++.|-++...|++++.|..|.+|++.+........+. ...+.++.+.|.++++.+..++.|+.+++|
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa----Gs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA----GSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh----ccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4568899999999999999999999999999998765421111111 123678999999999999999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
+++ ......++.| |++.|+++.|.-+...+++|+.|.+|++||+....|..+.-. .+.+
T Consensus 247 nvd---------------~~r~~~TLsG----HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~c 305 (459)
T KOG0288|consen 247 NVD---------------SLRLRHTLSG----HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQC 305 (459)
T ss_pred ecc---------------chhhhhhhcc----cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccc
Confidence 999 6777778887 999999999999888899999999999999998877776543 2344
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEE
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~ 437 (1134)
+.+..++ ..++||- ++++||..+..+......+. .| +.+++ +..+++.+.|.++++.|+...+-+..
T Consensus 306 nDI~~~~------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 306 NDIVCSI------SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred cceEecc------eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 5554442 4456655 89999999988877766543 77 55566 77888899999999999766554321
Q ss_pred EeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEee-
Q 001165 438 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL- 515 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~- 515 (1134)
+. -+....+|+ .+.+.|||||.|+|+||.||.+ +|++.+++...-......+. .+..+.|.
T Consensus 379 ~s--------------A~g~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~ 441 (459)
T KOG0288|consen 379 FS--------------AEGFKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNP 441 (459)
T ss_pred ee--------------ccccccccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcC
Confidence 11 122233555 5589999999999999999999 99999997654433333332 46678886
Q ss_pred -CCEEEEE
Q 001165 516 -GKIIVVC 522 (1134)
Q Consensus 516 -~~~lv~~ 522 (1134)
+.++++|
T Consensus 442 sG~~Llsa 449 (459)
T KOG0288|consen 442 SGSGLLSA 449 (459)
T ss_pred CCchhhcc
Confidence 5667766
No 71
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=183.26 Aligned_cols=331 Identities=15% Similarity=0.164 Sum_probs=200.9
Q ss_pred eEEEeecCCcceeEEEeecChhhHHh-hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEE
Q 001165 41 HIELWSSSQHKVRLGKYKRDSESVQR-EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119 (1134)
Q Consensus 41 ~l~IW~~~~~~~~l~~~~r~~~sl~~-~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~ 119 (1134)
...-|+..||.. .+.-....+.. .+.+++++||.||++||++++|+.|+||++..-.. +.|. ++
T Consensus 62 r~~~~k~~q~~f---~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr-------~~- 126 (420)
T KOG2096|consen 62 RNDQWKAKQPTF---VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR-------CI- 126 (420)
T ss_pred chhhhcccCCCc---ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh-------Hh-
Confidence 366777766532 12222223333 45789999999999999999999999999964211 1110 00
Q ss_pred EeeceeeccccccceEEEeeeCCCeEEEEecCC-cEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCc
Q 001165 120 LVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGA 198 (1134)
Q Consensus 120 ~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg-~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~ 198 (1134)
.-.+..+ ..+...|++|-..+++...+| +++.+..+-.+.+... ...++. |+
T Consensus 127 ---R~nve~d--hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~----------~~~v~~--D~---------- 179 (420)
T KOG2096|consen 127 ---RQNVEYD--HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS----------HHFVHI--DN---------- 179 (420)
T ss_pred ---hccccCC--CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC----------cccccc--cc----------
Confidence 0000111 223456777777778777766 5655544433322221 111111 00
Q ss_pred ccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC
Q 001165 199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG 278 (1134)
Q Consensus 199 ~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg 278 (1134)
......|+..|.++-..-.+.++++++.|-.+.+|+..+..... +.. +...-+.+++||+|++||+++-.-
T Consensus 180 --~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~---idt----nq~~n~~aavSP~GRFia~~gFTp 250 (420)
T KOG2096|consen 180 --LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQS---IDT----NQSSNYDAAVSPDGRFIAVSGFTP 250 (420)
T ss_pred --cccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeee---ecc----ccccccceeeCCCCcEEEEecCCC
Confidence 00123466777777778888899999999999999987543322 221 112335689999999999999999
Q ss_pred eEEEEeccc--cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 279 VVELYDLAE--SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 279 ~V~lwd~~~--~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
.|+||.+-- .+... .-.....++| |...|...+|||+..++++.+.||+|+|||+.-.-
T Consensus 251 DVkVwE~~f~kdG~fq---------ev~rvf~LkG----H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY------ 311 (420)
T KOG2096|consen 251 DVKVWEPIFTKDGTFQ---------EVKRVFSLKG----HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY------ 311 (420)
T ss_pred CceEEEEEeccCcchh---------hhhhhheecc----chhheeeeeeCCCcceeEEEecCCcEEEeeccceE------
Confidence 999999741 11000 1122345566 99999999999999999999999999999985321
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccE-EEEec-CCEEEeeecCCcEEeeeeeeCCC
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGED 434 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v-~~~s~-~k~l~S~s~d~ti~~w~l~~~~~ 434 (1134)
..+++. ..|-.|+ +-+-+. ..+++ +.++| |+.++ .+...+++++....+++
T Consensus 312 ------------~~~qDp--k~Lk~g~-~pl~aa-----------g~~p~RL~lsP~g~~lA-~s~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 312 ------------EAGQDP--KILKEGS-APLHAA-----------GSEPVRLELSPSGDSLA-VSFGSDLKVFASEDGKD 364 (420)
T ss_pred ------------ecCCCc--hHhhcCC-cchhhc-----------CCCceEEEeCCCCcEEE-eecCCceEEEEcccCcc
Confidence 000100 1122111 000000 11222 45556 44443 33334566665555554
Q ss_pred eEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001165 435 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLIL 487 (1134)
Q Consensus 435 ~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~il 487 (1134)
.|..-..|...|.+++|++||+++|+.|++-..+
T Consensus 365 -------------------~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv 398 (420)
T KOG2096|consen 365 -------------------YPELEDIHSTTISSISYSSDGKYIATCGDRYVRV 398 (420)
T ss_pred -------------------chhHHHhhcCceeeEEecCCCcEEeeecceeeee
Confidence 2444567889999999999999999999765443
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.5e-19 Score=180.78 Aligned_cols=236 Identities=15% Similarity=0.092 Sum_probs=186.6
Q ss_pred cccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEEEEec
Q 001165 208 SSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 208 ~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~lwd~ 285 (1134)
...+.+++||+.- +.++++..||.+++|+.... .......+ -|..++.++.+|+. .+.+++++.||+|++|+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~k----EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFK----EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHH----hhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 4567889999985 67888899999999995322 11111111 14578999999994 556778899999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
. .++.+.|+.| |..-|...+||| +++.+|+++.||++++||+...-....++.| ..++.
T Consensus 135 ~---------------r~~Sv~Tf~g----h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil 194 (311)
T KOG0277|consen 135 N---------------RPNSVQTFNG----HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEIL 194 (311)
T ss_pred C---------------CCcceEeecC----CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeE
Confidence 8 6777888888 999999999999 7889999999999999998643222237777 57899
Q ss_pred eeEEcCCCCCCcceEEEcc---eeEEEeCCCce-EEEEecCCCccE--EEEec--CCEEEeeecCCcEEeeeeeeCCCeE
Q 001165 365 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~-l~~~~~~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l 436 (1134)
++.|+.-++ ..+++|+ .++.||++..+ .+..+.+|.-.| +.++| ...++|++.|.|+++|+...++.
T Consensus 195 ~cdw~ky~~---~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-- 269 (311)
T KOG0277|consen 195 CCDWSKYNH---NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-- 269 (311)
T ss_pred eecccccCC---cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh--
Confidence 999987652 6778877 89999998754 355567888777 67777 66789999999999999765544
Q ss_pred EEeecCCCccccccccccceeeccCCCceEEEEEcC-CCCEEEEEeCCCeE-EEEc
Q 001165 437 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 437 ~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp-dG~~LAsgg~dG~i-lwd~ 490 (1134)
...++..|+.-|..+.+|+ ++.++|+.|-|+.+ +|+.
T Consensus 270 -----------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 -----------------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2456778999999999987 78899999999999 9984
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=2.5e-18 Score=177.17 Aligned_cols=265 Identities=12% Similarity=0.133 Sum_probs=195.7
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~ 281 (1134)
...+|...|.+++|+.+|..++.++.|+++.+|++.......... ...+.+.+.-++++|. ..++|+++.|.+|+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~----~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV----YRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc----ccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 345788999999999999999999999999999987543211111 1123455667788875 45899999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
+||+. ++++..... .++.-.-+.|||||.++|+++.|..|...|..+.+.+.+.+. .-
T Consensus 91 ~wd~r---------------~~k~~~~i~-----~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~--~~ 148 (313)
T KOG1407|consen 91 IWDIR---------------SGKCTARIE-----TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF--KF 148 (313)
T ss_pred EEEec---------------cCcEEEEee-----ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc--cc
Confidence 99999 666665543 355556789999999999999999999999988777766554 34
Q ss_pred ceeeeEEcCCCCCCcceEEE-c-ceeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeE
Q 001165 362 SISSPIVKPNQDCKYEPLMS-G-TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~s-g-s~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l 436 (1134)
.++.+.|+.++ . -.+++ | +++-+-..-.-+.+...+.|...- +.|+| |+.+++|+.|..+.+||+..--
T Consensus 149 e~ne~~w~~~n--d-~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--- 222 (313)
T KOG1407|consen 149 EVNEISWNNSN--D-LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--- 222 (313)
T ss_pred eeeeeeecCCC--C-EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh---
Confidence 67788887544 1 23343 4 244443333445666777887766 55666 9999999999999999963211
Q ss_pred EEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc--EEEeCCccceeeeEEEEEE
Q 001165 437 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLL 513 (1134)
Q Consensus 437 ~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~--Wk~F~~~~~e~~~~v~gl~ 513 (1134)
+...+..+.|||+.++||.||++||+|+.|-.| +=++.+|. |+. ..+ -....+.
T Consensus 223 -----------------C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----~~~--~~t~tVA 279 (313)
T KOG1407|consen 223 -----------------CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----PCE--GPTFTVA 279 (313)
T ss_pred -----------------hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----ecc--CCceeEE
Confidence 235567889999999999999999999999999 99999884 321 111 1234689
Q ss_pred eeCCEEEEE
Q 001165 514 WLGKIIVVC 522 (1134)
Q Consensus 514 W~~~~lv~~ 522 (1134)
|+++..+.+
T Consensus 280 WHPk~~LLA 288 (313)
T KOG1407|consen 280 WHPKRPLLA 288 (313)
T ss_pred ecCCCceee
Confidence 998876655
No 74
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.5e-17 Score=187.95 Aligned_cols=281 Identities=14% Similarity=0.151 Sum_probs=186.8
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc-ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeee-CCCeEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK-SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML 146 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~-d~~~ll 146 (1134)
+++++|+|.+++.||++-++|+|.||++..+-. .... +. +.+.+|-+++. ++.+++
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi--~g--------------------~~drsIE~L~W~e~~RLF 84 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI--HG--------------------PEDRSIESLAWAEGGRLF 84 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE--ec--------------------CCCCceeeEEEccCCeEE
Confidence 579999999999999999999999999975310 0001 11 11223322222 477889
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~ 226 (1134)
+...+|.|.. ||-....... ......+.|.+|+.+|.+..++++
T Consensus 85 S~g~sg~i~E--wDl~~lk~~~----------------------------------~~d~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 85 SSGLSGSITE--WDLHTLKQKY----------------------------------NIDSNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred eecCCceEEE--EecccCceeE----------------------------------EecCCCcceeEEEeCCccceEEee
Confidence 9888998865 6654332220 123456889999999999999999
Q ss_pred EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEE
Q 001165 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVY 306 (1134)
Q Consensus 227 ~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l 306 (1134)
+.||.++.++.............. ..+.+.|++|+|++..||.||.||.|++||........ +. +.+
T Consensus 129 cddGvl~~~s~~p~~I~~~r~l~r----q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~----~~---~~~-- 195 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKITYKRSLMR----QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH----II---TMQ-- 195 (691)
T ss_pred cCCceEEEEecCCceEEEEeeccc----ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE----Ee---eec--
Confidence 999976666554333222111211 13789999999999999999999999999998332211 00 000
Q ss_pred EEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---
Q 001165 307 YTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 383 (1134)
Q Consensus 307 ~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--- 383 (1134)
. .+......--|.+|.|-.|| .||+|..-|+|+.||-..+.++.++.-| .+.|.+++..+++ +.+.+++
T Consensus 196 -~-d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~ 267 (691)
T KOG2048|consen 196 -L-DRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDP 267 (691)
T ss_pred -c-cccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCC
Confidence 0 00000122347788887665 7889999999999999999999888877 7789999999887 5666554
Q ss_pred eeEEEeCCCc-eEEEEe---cCCCccEEEEec-CCEEEeeecCCcEEeee
Q 001165 384 SMMQWDEYGY-RLYAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 384 ~i~~W~~~~~-~l~~~~---~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~ 428 (1134)
++..+...++ +-|... ..|...+-.+.. ...+.+|+.|.++.+-.
T Consensus 268 ~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 268 KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred ceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcc
Confidence 5555554443 224332 235555533333 45778899998876644
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.2e-18 Score=198.97 Aligned_cols=265 Identities=22% Similarity=0.305 Sum_probs=193.7
Q ss_pred CeEEEEEcCCeEEEeecCCccee-EEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCC
Q 001165 31 NGLLLIASPCHIELWSSSQHKVR-LGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1134)
Q Consensus 31 g~llAs~s~~~l~IW~~~~~~~~-l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~ 109 (1134)
...+|++....|++|+.....+. ++.. +.+.+++|.|+|+|+.||+|+.+|+|.|||+....+.....+
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~--------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-- 257 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSF--------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-- 257 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEec--------CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC--
Confidence 44788888889999999755422 2221 135789999999999999999999999999965321111110
Q ss_pred CCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCc
Q 001165 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (1134)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 189 (1134)
++...|.|++..+..+.+|+.+|.+.
T Consensus 258 --------------------~h~~rvg~laW~~~~lssGsr~~~I~---------------------------------- 283 (484)
T KOG0305|consen 258 --------------------SHASRVGSLAWNSSVLSSGSRDGKIL---------------------------------- 283 (484)
T ss_pred --------------------CcCceeEEEeccCceEEEecCCCcEE----------------------------------
Confidence 02233444444444455555555544
Q ss_pred cccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC
Q 001165 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ 269 (1134)
Q Consensus 190 l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ 269 (1134)
.+++........ .. ..|...+..++|++|++
T Consensus 284 --------------------------------------------~~dvR~~~~~~~-~~----~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 284 --------------------------------------------NHDVRISQHVVS-TL----QGHRQEVCGLKWSPDGN 314 (484)
T ss_pred --------------------------------------------EEEEecchhhhh-hh----hcccceeeeeEECCCCC
Confidence 333321110000 00 01346778899999999
Q ss_pred EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEE--CCCcEEEEec
Q 001165 270 ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGW--KSRGLTVWSV 346 (1134)
Q Consensus 270 llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~--~Dg~I~vWdv 346 (1134)
++|+|+.|+.+.|||.. ..++..++.. |+++|.+++|+| ....||+|+ .|+.|++||+
T Consensus 315 ~lASGgnDN~~~Iwd~~---------------~~~p~~~~~~----H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGL---------------SPEPKFTFTE----HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred eeccCCCccceEeccCC---------------CccccEEEec----cceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 99999999999999996 4555566655 999999999999 677999974 7899999999
Q ss_pred CCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeee
Q 001165 347 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG 419 (1134)
Q Consensus 347 ~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s 419 (1134)
.++..+.++.. .+.|.++.|++... +.+.+.+ .+.+|...+.++.....+|..+| ++++| |..+++++
T Consensus 376 ~~g~~i~~vdt--gsQVcsL~Wsk~~k---Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 376 NTGARIDSVDT--GSQVCSLIWSKKYK---ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred CCCcEeccccc--CCceeeEEEcCCCC---EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec
Confidence 99998888765 45799999999861 4444433 78999999999999999999999 56667 89999999
Q ss_pred cCCcEEeeeeeeC
Q 001165 420 VSGMTYARQVIYG 432 (1134)
Q Consensus 420 ~d~ti~~w~l~~~ 432 (1134)
.|.|+++|.+...
T Consensus 451 ~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 451 ADETLRFWNLFDE 463 (484)
T ss_pred ccCcEEeccccCC
Confidence 9999999997653
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=1.5e-19 Score=200.18 Aligned_cols=280 Identities=15% Similarity=0.161 Sum_probs=210.5
Q ss_pred cccCCCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 202 DHKFPISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 202 ~~~~~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
..+.+|...|.++.|.| .+.++++++-||.|++|++-.... -.+... .|...|..++||++|+.+.+++-|+.+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~-~lrtf~----gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR-CLRTFK----GHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc-eehhhh----cchhhhhhhhccccCCeeeeeecceee
Confidence 35679999999999999 889999999999999999865221 111111 234667789999999999999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CEEEEEECCCcEEEEecCCCeeEEEeccCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 359 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~ 359 (1134)
++||++ +|+++..+.. ...++|+.|.||+ +.+++|+.|+.|+.||+.++..++....|
T Consensus 283 KlwDtE---------------TG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h- 341 (503)
T KOG0282|consen 283 KLWDTE---------------TGQVLSRFHL-----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH- 341 (503)
T ss_pred eeeccc---------------cceEEEEEec-----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-
Confidence 999999 8888877632 3468999999999 79999999999999999999988877666
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEE---ecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeC
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI---EEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~---~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~ 432 (1134)
.+.|..+.|-+++ ..+++.+ ++++|+.+..-.+.. ...|+-+-+...| ++.++.-+.|+.+.++.+...
T Consensus 342 Lg~i~~i~F~~~g----~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 342 LGAILDITFVDEG----RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred hhheeeeEEccCC----ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 8899999999998 7777776 899999876544332 2335555577777 888888888888877653211
Q ss_pred CCeEEEeecCCCccccccccccceeeccCCCc--eEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEE
Q 001165 433 EDRLLVVQSEDTDELKILHLNLPVSYISQNWP--VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS 509 (1134)
Q Consensus 433 ~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~--V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v 509 (1134)
-. ...-..+.||.-+ -..+.|||||++|++|..||.+ +||..+-+ ++..... .+-.|
T Consensus 418 ~r-----------------~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~lka-h~~~c 477 (503)
T KOG0282|consen 418 FR-----------------LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKLKA-HDQPC 477 (503)
T ss_pred cc-----------------cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh--hhhcccc-CCcce
Confidence 10 0012346677543 3478999999999999999999 99987652 2222211 13468
Q ss_pred EEEEeeCC---EEEEEEEecCCCeeEEEEE
Q 001165 510 KGLLWLGK---IIVVCNYIDSSNTYELLFY 536 (1134)
Q Consensus 510 ~gl~W~~~---~lv~~~~~~~~~~~eLrly 536 (1134)
+++.|.+. .+++| +-+..|++|
T Consensus 478 i~v~wHP~e~Skvat~-----~w~G~Ikiw 502 (503)
T KOG0282|consen 478 IGVDWHPVEPSKVATC-----GWDGLIKIW 502 (503)
T ss_pred EEEEecCCCcceeEec-----ccCceeEec
Confidence 99999854 46665 344667776
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=1.6e-18 Score=208.89 Aligned_cols=299 Identities=13% Similarity=0.143 Sum_probs=204.5
Q ss_pred CCcccEEEEEEcCCCCeEEEEE--cCCeEEEEEeccCCccc------cceecccccCCCCCeEEEEECCCCCEEEEeeeC
Q 001165 206 PISSAIIWLELCLPMRLLFVLY--SNGQLMSCSVSKKGLKL------AEFIKIDKELGSGDAVCASIAPEQQILAVGTRR 277 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~--sDG~v~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d 277 (1134)
+++..|.+|+.+|++..+++++ .||.+.+|+........ ...+-...-.|.+.++|+.|+|||+++|+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4556789999999999999999 89888899886432110 011111111256789999999999999999999
Q ss_pred CeEEEEeccccccceeeee----eeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEE
Q 001165 278 GVVELYDLAESASLIRTVS----LYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS 353 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~----l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~ 353 (1134)
+.|.||.... .+....+. ...-..-+....+.+ |.+.|..++||||+.+||+++.|++|.||+..+..++.
T Consensus 91 ~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~----H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 91 RLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRG----HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ceEEEeeecc-cCCcccccccccccccceeeEEEEEec----CCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 9999999884 10000000 000002235556666 99999999999999999999999999999998889999
Q ss_pred EeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCc------cEEE--Eec-CCEEEeeec-
Q 001165 354 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE------RVLI--FSF-GKCCLNRGV- 420 (1134)
Q Consensus 354 tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~------~v~~--~s~-~k~l~S~s~- 420 (1134)
++++| .+.|-.+.|.|-| ++++|-+ ++++|......+.....++-+ .+.. .+| |+.++++..
T Consensus 166 vl~~H-~s~VKGvs~DP~G----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 166 VLRGH-QSLVKGVSWDPIG----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeecc-cccccceEECCcc----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 99998 7799999999999 9999866 999999877666666554432 2333 444 777776532
Q ss_pred CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC------C-------C----EEEEEeCC
Q 001165 421 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD------G-------M----FLAVAGLH 483 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd------G-------~----~LAsgg~d 483 (1134)
.+....-.+.+.+. | +.-..+.||..|+.++.|+|. + . .+|+||+|
T Consensus 241 n~~~~~~~IieR~t--------------W---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 241 NGGKSTIAIIERGT--------------W---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred cCCcceeEEEecCC--------------c---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 11111111111111 2 223468899999999999971 1 1 68999999
Q ss_pred CeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCC--EEEEEEEecCCCeeEEEEEeC
Q 001165 484 GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 484 G~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~--~lv~~~~~~~~~~~eLrly~~ 538 (1134)
+.+ +|.....| .+| ...+--+-.|.+|.|..+ .|.+|.+ +..|.++.+
T Consensus 304 rSlSVW~T~~~R-Pl~-vi~~lf~~SI~DmsWspdG~~LfacS~-----DGtV~~i~F 354 (942)
T KOG0973|consen 304 RSLSVWNTALPR-PLF-VIHNLFNKSIVDMSWSPDGFSLFACSL-----DGTVALIHF 354 (942)
T ss_pred ccEEEEecCCCC-chh-hhhhhhcCceeeeeEcCCCCeEEEEec-----CCeEEEEEc
Confidence 999 99985543 222 211111134789999854 4556622 344555555
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=7.2e-17 Score=188.70 Aligned_cols=453 Identities=15% Similarity=0.173 Sum_probs=289.6
Q ss_pred EEeecCe-E-EEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcce
Q 001165 26 YFKVNNG-L-LLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1134)
Q Consensus 26 ~fS~dg~-l-lAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~ 103 (1134)
.+..-|+ + +.++-+++..+||+++-.+..+. +.. ...+.+++ .+..+..+|... .|-.|.-.. .+
T Consensus 40 ~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs-~~l------p~~I~ala--s~~~~vy~A~g~-~i~~~~rgk---~i 106 (910)
T KOG1539|consen 40 RVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVS-KPL------PDKITALA--SDKDYVYVASGN-KIYAYARGK---HI 106 (910)
T ss_pred eeeecCceEEEEEecCceEEEEeccceEEEEec-CCC------CCceEEEE--ecCceEEEecCc-EEEEEEccc---eE
Confidence 3444444 3 33455789999999744333222 111 23455554 344455555443 455554321 11
Q ss_pred ecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccccccc
Q 001165 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (1134)
Q Consensus 104 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~ 183 (1134)
.- ....+.+.|.-+.+-|++++.+..++.+.+|.......... +. ++
T Consensus 107 ~~---------------------~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~-----------l~-~~ 153 (910)
T KOG1539|consen 107 RH---------------------TTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELY-----------LQ-ST 153 (910)
T ss_pred EE---------------------EeccccceEEEEeeecceEEEEEccCcEEEEEecccccccc-----------cc-ce
Confidence 00 00011134555566789999999999988765433100000 00 00
Q ss_pred ccCCCccccccCCCcccccccCCCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEE
Q 001165 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCA 262 (1134)
Q Consensus 184 ~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 262 (1134)
........|+++.+-+ ..|.++.++++|++.+|++.....-. ....| ...||++
T Consensus 154 -------------------~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~----~f~~~--~s~IT~i 208 (910)
T KOG1539|consen 154 -------------------FLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVY----TFQEF--FSRITAI 208 (910)
T ss_pred -------------------eeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEE----Eeccc--ccceeEe
Confidence 0111222377775533 35899999999999999997644321 11112 2789999
Q ss_pred EECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcE
Q 001165 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGL 341 (1134)
Q Consensus 263 a~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I 341 (1134)
.=+|-=..+|+|..||+|.++|++ .++.+.+++. ..|+|++++|..||. .||+|+..|.+
T Consensus 209 eqsPaLDVVaiG~~~G~ViifNlK---------------~dkil~sFk~----d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 209 EQSPALDVVAIGLENGTVIIFNLK---------------FDKILMSFKQ----DWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred ccCCcceEEEEeccCceEEEEEcc---------------cCcEEEEEEc----cccceeEEEeccCCCeeEEeccCCceE
Confidence 999999999999999999999999 8899988875 469999999999999 66777777999
Q ss_pred EEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEE--eCCC--ceEEEEecCCCccEEEEec---
Q 001165 342 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW--DEYG--YRLYAIEEGSSERVLIFSF--- 411 (1134)
Q Consensus 342 ~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W--~~~~--~~l~~~~~~h~~~v~~~s~--- 411 (1134)
.+||+.+.++...++..|.++|....|-|.. ..+++.+ +.++| |... .+++....||..+...+.+
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e----pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~ 345 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGE----PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS 345 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCC----ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc
Confidence 9999999999888886557789999998886 6666655 55665 4333 3777777899888755444
Q ss_pred -CCEEEeeecCCcEEeeeeeeCCCeEEEee-----c------C-----CCcc-----------cccccc-----------
Q 001165 412 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQ-----S------E-----DTDE-----------LKILHL----------- 452 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~l~~~~~~l~l~~-----g------~-----~~~~-----------~~w~~~----------- 452 (1134)
+..+.+++.|++.+..++.+.....-+.+ + . ..|. ..|..+
T Consensus 346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence 77899999999887776543211111111 0 0 0010 112111
Q ss_pred -------------ccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE-EeCCccceeeeEEEEEEee--
Q 001165 453 -------------NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL-- 515 (1134)
Q Consensus 453 -------------~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk-~F~~~~~e~~~~v~gl~W~-- 515 (1134)
--|..+......++++++|+.|++...|...|.| +|++++|..+ .|++. +..+..|+|++-.
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-PAHKGEVTGLAVDGT 504 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC-ccccCceeEEEecCC
Confidence 1122233334678999999999999999999999 9999999765 56532 2223457766554
Q ss_pred CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEEecC--CEEEEEEcCCeEEEEEEE
Q 001165 516 GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE--DYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 516 ~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~~~~--d~llv~~~d~~i~l~~~~ 581 (1134)
+..+|+|+ .+.-+.+|++.+ ..++....+...+..+...+ +.+++++.|..|.+++..
T Consensus 505 n~~~vsa~-----~~Gilkfw~f~~---k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 505 NRLLVSAG-----ADGILKFWDFKK---KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred CceEEEcc-----CcceEEEEecCC---cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 56688873 446799998852 23455555655554444333 445558889999999875
No 79
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.6e-16 Score=179.68 Aligned_cols=415 Identities=13% Similarity=0.150 Sum_probs=245.1
Q ss_pred eeEEEeecCeEEEEE-cCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~-s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
-.+|||.+.+.||++ +++.|.||+....-........ .+.+.+..++|+ +|..|.+.+.+|.|.-||+....
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-----~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk- 101 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-----PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK- 101 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-----CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc-
Confidence 348899998888876 5789999999732111111111 134567889999 56788888999999999998643
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~ 181 (1134)
+.+. .+..+-.+.+ .|+.+.++.+++|+.||.++.+ ++.. ....
T Consensus 102 ~~~~--~d~~gg~IWs------------------iai~p~~~~l~IgcddGvl~~~--s~~p-~~I~------------- 145 (691)
T KOG2048|consen 102 QKYN--IDSNGGAIWS------------------IAINPENTILAIGCDDGVLYDF--SIGP-DKIT------------- 145 (691)
T ss_pred eeEE--ecCCCcceeE------------------EEeCCccceEEeecCCceEEEE--ecCC-ceEE-------------
Confidence 3321 1111111222 2445566789999999955443 3321 1110
Q ss_pred ccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCC---CC
Q 001165 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGS---GD 258 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~---~~ 258 (1134)
+ ...+.-.++.|.+++|+|++..++.|+.||.+.+|+............... .... .-
T Consensus 146 --~----------------~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d-~l~k~~~~i 206 (691)
T KOG2048|consen 146 --Y----------------KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLD-RLSKREPTI 206 (691)
T ss_pred --E----------------EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccc-ccccCCceE
Confidence 0 001233468999999999999999999999999999976543321100000 0111 11
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
+.++.|= ...+||+|...|+|.+||.. .+.++..... |.+.|.|++-++++.++.+++.|
T Consensus 207 VWSv~~L-rd~tI~sgDS~G~V~FWd~~---------------~gTLiqS~~~----h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 207 VWSVLFL-RDSTIASGDSAGTVTFWDSI---------------FGTLIQSHSC----HDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred EEEEEEe-ecCcEEEecCCceEEEEccc---------------Ccchhhhhhh----hhcceeEEEEcCCCCeEEEccCC
Confidence 3345554 44579999999999999998 5665555554 89999999999999999999999
Q ss_pred CcEEEEecCCCee---EEEeccCCCCceeeeEEcCC----------------CC-----------CCcceEEEcc----e
Q 001165 339 RGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPN----------------QD-----------CKYEPLMSGT----S 384 (1134)
Q Consensus 339 g~I~vWdv~~~~l---~~tl~~h~~~~V~sv~~sp~----------------~~-----------~~~~~l~sgs----~ 384 (1134)
+.|.-+...++.. ....+.+|...|.+++..++ .. -.....+++. .
T Consensus 267 ~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L 346 (691)
T KOG2048|consen 267 PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRL 346 (691)
T ss_pred CceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceE
Confidence 9999988766532 12222333445555544332 10 0001112222 4
Q ss_pred eEEEeCCCceEEEEecC----CCc-------------cE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCC
Q 001165 385 MMQWDEYGYRLYAIEEG----SSE-------------RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 444 (1134)
Q Consensus 385 i~~W~~~~~~l~~~~~~----h~~-------------~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~ 444 (1134)
...|...+..+|..... |.+ .| .+++| |..++-+. ....+++.+.... .+-+..-.+.
T Consensus 347 ~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~-~vk~~~v~~~ 424 (691)
T KOG2048|consen 347 LVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDP-NVKVINVDDV 424 (691)
T ss_pred EEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCc-ceeEEEeccc
Confidence 55677666666654322 211 12 44455 44443222 2223333332211 1111111100
Q ss_pred ------------------------cccccccccc--ce-------eeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 445 ------------------------DELKILHLNL--PV-------SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 445 ------------------------~~~~w~~~~~--~~-------~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
....|+..+. |. .-.+...+|..++.||||+|+|+++.+|.| +|++
T Consensus 425 ~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 425 PLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred hhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 1111221111 10 111345679999999999999999999999 9999
Q ss_pred cCCcEEEeCCccceeeeEEEEEE-eeCCEEEEE
Q 001165 491 RQKKWRVFGDITQEQKIQSKGLL-WLGKIIVVC 522 (1134)
Q Consensus 491 ~sg~Wk~F~~~~~e~~~~v~gl~-W~~~~lv~~ 522 (1134)
.+++-+.+..... ..++..++. |..+.++++
T Consensus 505 ~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 505 ETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred ccceeecchhccC-cceeeeeccccccCcEEEE
Confidence 9998777664332 334444444 777777776
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=205.52 Aligned_cols=241 Identities=16% Similarity=0.153 Sum_probs=181.2
Q ss_pred ccC-CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccC----------------------------Cc--------c--
Q 001165 203 HKF-PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK----------------------------GL--------K-- 243 (1134)
Q Consensus 203 ~~~-~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~----------------------------~~--------~-- 243 (1134)
.+. .|++.|.+|.||+||+++|+++.||.+.+|.+... .. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 79999999999999999999999999999987540 00 0
Q ss_pred ---ccce-eccc------------ccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE
Q 001165 244 ---LAEF-IKID------------KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY 307 (1134)
Q Consensus 244 ---~~~~-~~~~------------~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~ 307 (1134)
+..+ +.+. ...|.++|..++||.++ +|.+++.|.|||||++. ..++++
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~---------------~~~CL~ 404 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG---------------RKECLK 404 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCC---------------Ccceee
Confidence 0000 0000 01146788999999876 78888999999999999 778888
Q ss_pred EeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---
Q 001165 308 TFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 383 (1134)
Q Consensus 308 ~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--- 383 (1134)
+|. |..-||||+|.| |.++++||+-||.+|||++...+.+.-..- ..-|++++|.|+| +..+-|+
T Consensus 405 ~F~-----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--~~lITAvcy~PdG----k~avIGt~~G 473 (712)
T KOG0283|consen 405 VFS-----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--RDLITAVCYSPDG----KGAVIGTFNG 473 (712)
T ss_pred EEe-----cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh--hhhheeEEeccCC----ceEEEEEecc
Confidence 765 899999999999 899999999999999999998775543322 2569999999999 7777676
Q ss_pred eeEEEeCCCceEEEEec---------CCCccE--EEEecCC--EEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccc
Q 001165 384 SMMQWDEYGYRLYAIEE---------GSSERV--LIFSFGK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 450 (1134)
Q Consensus 384 ~i~~W~~~~~~l~~~~~---------~h~~~v--~~~s~~k--~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~ 450 (1134)
.+++++..+.++..... .|. +| ++|.|+. .++..+.|..|++.|..+.+.
T Consensus 474 ~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l---------------- 536 (712)
T KOG0283|consen 474 YCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL---------------- 536 (712)
T ss_pred EEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh----------------
Confidence 88999999888765432 122 67 4555543 366677888999988533222
Q ss_pred ccccceeeccC---CCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 451 HLNLPVSYISQ---NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 451 ~~~~~~~~~~h---~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
...|+|+ +..+ ..+|+.||++|++|++|..| +|+...
T Consensus 537 ----v~KfKG~~n~~SQ~-~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 537 ----VHKFKGFRNTSSQI-SASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ----hhhhcccccCCcce-eeeEccCCCEEEEeecCceEEEEeCCC
Confidence 3445533 2233 67899999999999999999 999854
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.3e-18 Score=178.64 Aligned_cols=273 Identities=14% Similarity=0.196 Sum_probs=194.6
Q ss_pred EEEEEcCCC-CeEEEEE-------cCCeEEEEEecc-CCccccceecccccCCCCCeEEEEECCCC-CEEEEeeeCCeEE
Q 001165 212 IWLELCLPM-RLLFVLY-------SNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGVVE 281 (1134)
Q Consensus 212 ~~i~fsp~~-~~la~~~-------sDG~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~V~ 281 (1134)
.++.|||.. +.+|+++ .+|++.+.+..+ .+....... .-.+....|+||+.. ..+++++.||+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-----d~~D~LfdV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-----DTEDGLFDVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-----ecccceeEeeecCCCcceEEEEecCceEE
Confidence 467888864 4555543 358888888752 222211111 113567789999964 4677889999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
|||.... ..++..++. |+..|.++.|++ +++.+.+++.||+|++|+..-+..++|+.|| .
T Consensus 87 l~d~~~~--------------s~Pi~~~kE----H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-~ 147 (311)
T KOG0277|consen 87 LFDLTMP--------------SKPIHKFKE----HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-N 147 (311)
T ss_pred EeccCCC--------------CcchhHHHh----hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC-c
Confidence 9997632 234444444 999999999999 6778888899999999999888899999998 7
Q ss_pred CceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec----CCEEEeeecCCcEEeeeeeeCC
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~----~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
+-|...+|+|..+ +.+++.+ +.++||.+..--.+....|...+.+.++ -..++||+.|+.++.||+..-.
T Consensus 148 ~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 148 SCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred cEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 8899999999863 5666655 8999998654333446788888877777 4478999999999999986644
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC-CCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEE
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKG 511 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd-G~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~g 511 (1134)
.. ...+.+|.-.|+.+.|||- ...||+++.|=++ +||...+. ...+...+..+| +.|
T Consensus 225 ~p-------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEF-v~g 283 (311)
T KOG0277|consen 225 TP-------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEF-VCG 283 (311)
T ss_pred cc-------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-hhhhhhhccceE-Eec
Confidence 31 2466799999999999995 5688999999999 99876432 112222334444 445
Q ss_pred EEee---CCEEEEEEEecCCCeeEEEEEe
Q 001165 512 LLWL---GKIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 512 l~W~---~~~lv~~~~~~~~~~~eLrly~ 537 (1134)
+.|. +..+..| +-+..+.+|.
T Consensus 284 ~Dws~~~~~~vAs~-----gWDe~l~Vw~ 307 (311)
T KOG0277|consen 284 LDWSLFDPGQVAST-----GWDELLYVWN 307 (311)
T ss_pred cccccccCceeeec-----ccccceeeec
Confidence 6664 3344444 3445667774
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=6.4e-17 Score=189.10 Aligned_cols=404 Identities=14% Similarity=0.082 Sum_probs=252.1
Q ss_pred CeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCC
Q 001165 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (1134)
Q Consensus 31 g~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~ 110 (1134)
++.+...+++.+.||+++ .+..+..+.+. ...++++.=+|==.-+|+|+.+|+|.|+++..+..-...+..
T Consensus 173 NKIvvGs~~G~lql~Nvr-t~K~v~~f~~~------~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-- 243 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVR-TGKVVYTFQEF------FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-- 243 (910)
T ss_pred eeEEEeecCCcEEEEEec-cCcEEEEeccc------ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--
Confidence 344444567899999997 44445555433 245788888887668999999999999999775322222111
Q ss_pred CCcceeeEEEeeceeec------------------------cccccceEEEe-eeCCC-eEEEEecCCcEEEEecCCccc
Q 001165 111 SGLFFIKISLVLNEQLP------------------------FAEKGLSVSNI-VSDNK-HMLLGLSDGSLYSISWKGEFY 164 (1134)
Q Consensus 111 ~~~~~~s~~~~~~~~~~------------------------~~~~~~~V~~~-s~d~~-~llv~t~dg~v~~~~wd~~~~ 164 (1134)
-.++.+++|..++... ...+.+++... ...|+ -++.+..|..++.|-.|....
T Consensus 244 -~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 244 -WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred -ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC
Confidence 1134445554433310 01122222111 12233 344555677777777773322
Q ss_pred cceec---cccCCCccccccccccCCCc--cccccCCCc--------------ccc-------------cccCCCcccEE
Q 001165 165 GAFEL---VHSSNDSSVAALSHHFPSNG--LASVDTSGA--------------FVS-------------DHKFPISSAII 212 (1134)
Q Consensus 165 ~~~~~---~~~~~~~~~i~~i~~~~~~~--l~s~~~~~~--------------~~~-------------~~~~~~~~~V~ 212 (1134)
.+..+ .+|...-.++ .|...++ +-+...+.. +.. ....-+-.+|.
T Consensus 323 ~pR~LR~R~GHs~Pp~~i---rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 323 VPRLLRSRGGHSAPPSCI---RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred cchheeeccCCCCCchhe---eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 11111 1121111122 2221111 111111110 000 00111224566
Q ss_pred EEEEcCC-----CCeEEEEEcCCeEEEEEeccCCcccc-ceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 213 WLELCLP-----MRLLFVLYSNGQLMSCSVSKKGLKLA-EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 213 ~i~fsp~-----~~~la~~~sDG~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
.+++.-. .|.+++--.+-.++.|+......... -.....+ .....++|+++++.|++...|++.|+|-+||++
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~-~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK-KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc-ccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 6666543 34566666677788888865443110 0011000 023568899999999999999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+|-....+. ..+.|.++|+.++...-++.++|++.+|-++.||..+..+..+++-. .++..+
T Consensus 479 ---------------SGi~r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~i 540 (910)
T KOG1539|consen 479 ---------------SGIHRKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGI 540 (910)
T ss_pred ---------------cCeeecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCccee
Confidence 443333321 24569999999999888899999999999999999988888887652 356666
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEee
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~ 440 (1134)
..+... ..++.+. .|++.|..+.+....+.||+++| +.|++ ||.+++++.|++|++||+.++..
T Consensus 541 v~hr~s----~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l------ 610 (910)
T KOG1539|consen 541 VYHRVS----DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL------ 610 (910)
T ss_pred eeeehh----hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce------
Confidence 666554 4444333 89999999999999999999999 55666 99999999999999999877653
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE--EEEcc
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIR 491 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i--lwd~~ 491 (1134)
.. -..-..|..++.|||+|.+||++..|+.- +|.-.
T Consensus 611 --------------ID-~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 611 --------------ID-GLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred --------------ee-eEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 11 12234578899999999999999887544 77543
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.81 E-value=3.6e-18 Score=204.35 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=215.1
Q ss_pred eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEE
Q 001165 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1134)
Q Consensus 134 ~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~ 213 (1134)
.+.|....++.+..++.+.+++. |+....... ...+.+|.+.|.+
T Consensus 210 ~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~i---------------------------------~~~l~GH~g~V~~ 254 (537)
T KOG0274|consen 210 VVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYLI---------------------------------LTRLVGHFGGVWG 254 (537)
T ss_pred hhhhheeecCeEEecCCCceeEE--eecccceEE---------------------------------EeeccCCCCCcee
Confidence 34555556777888888888854 554322111 1136789999999
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccccee
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~ 293 (1134)
++|..-++.+++++.|.++++|+..++.-.. .+ +.+.+.+.|+..- ...+++|+.|.+|++|+++
T Consensus 255 l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~--~l----~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~------- 319 (537)
T KOG0274|consen 255 LAFPSGGDKLVSGSTDKTERVWDCSTGECTH--SL----QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT------- 319 (537)
T ss_pred EEEecCCCEEEEEecCCcEEeEecCCCcEEE--Ee----cCCCceEEEEEcc--CceEeeccCCceEEEEecc-------
Confidence 9999888999999999999999976533111 11 1234556666654 4468889999999999999
Q ss_pred eeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCC
Q 001165 294 TVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 373 (1134)
Q Consensus 294 ~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~ 373 (1134)
++..+.++.+ |+++|++|..+ +.++++|+.|++|+||++..++++.++.+| ...|.++.+.+.
T Consensus 320 --------n~~~l~l~~~----h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-- 382 (537)
T KOG0274|consen 320 --------NGACLNLLRG----HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-- 382 (537)
T ss_pred --------CcceEEEecc----ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc--
Confidence 8888888887 99999999988 889999999999999999999999999997 789999988663
Q ss_pred CCcceEEEcc---eeEEEeCCCc-eEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccc
Q 001165 374 CKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 448 (1134)
Q Consensus 374 ~~~~~l~sgs---~i~~W~~~~~-~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~ 448 (1134)
..+.+|+ ++++||+++. +++.+..+|.+-+..+.+ .+.+++++.|++|++||...++.
T Consensus 383 ---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-------------- 445 (537)
T KOG0274|consen 383 ---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC-------------- 445 (537)
T ss_pred ---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce--------------
Confidence 3567777 8999999999 999999999888877777 88999999999999999877665
Q ss_pred ccccccceeecc-CCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 449 ILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 449 w~~~~~~~~~~~-h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
..++.+ |...|..+++. ...+++++.+|.+ +||+.++.
T Consensus 446 ------~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 446 ------LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ------eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 344445 55778888876 5678899999999 99999874
No 84
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=175.86 Aligned_cols=300 Identities=14% Similarity=0.125 Sum_probs=202.0
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC-CeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-GVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-g~V~ 281 (1134)
.+.+|+..|++++|+.+|..+++++.|+.+.+|++.++..+..+.+... +..+..|.|+|+||.+-+++.+.+ .+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4678999999999999999999999999999999998776655554432 223578999999999988777665 4799
Q ss_pred EEeccccc--cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCC
Q 001165 282 LYDLAESA--SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 359 (1134)
Q Consensus 282 lwd~~~~~--~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~ 359 (1134)
+|.+.+.+ +..+.....+ . .. +..-|.-.|..+-.--.+.+|+|++.|.+|.+|+.. |+++.++...
T Consensus 159 vyk~~K~~dG~~~~~~v~~D--~----~~---f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn- 227 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHID--N----LE---FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN- 227 (420)
T ss_pred EEEeeecccCCCCccccccc--c----cc---cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-
Confidence 99987433 2221111100 0 00 222377778888888889999999999999999999 5667776543
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC---Cc-----eEEEEecCCCccE--EEEec-CCEEEeeecCCcEE
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GY-----RLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTY 425 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~---~~-----~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~ 425 (1134)
...-...+.||+| +++++++ .+++|.+- .| .....++||+..| .+|++ .+.++|.|.||+.+
T Consensus 228 q~~n~~aavSP~G----RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 228 QSSNYDAAVSPDG----RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred cccccceeeCCCC----cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence 3345678899999 8888766 89999851 22 2244568999999 45555 78899999999999
Q ss_pred eeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCcEE-EeCCccce
Q 001165 426 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR-VFGDITQE 504 (1134)
Q Consensus 426 ~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk-~F~~~~~e 504 (1134)
+||..-. |...+.|.+ ......|.. .....|+ -+++||+|+.||++.....-+|..++|+-. .|.+ .|+
T Consensus 304 iwdtdVr------Y~~~qDpk~-Lk~g~~pl~-aag~~p~-RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~-~h~ 373 (420)
T KOG2096|consen 304 IWDTDVR------YEAGQDPKI-LKEGSAPLH-AAGSEPV-RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED-IHS 373 (420)
T ss_pred Eeeccce------EecCCCchH-hhcCCcchh-hcCCCce-EEEeCCCCcEEEeecCCceEEEEcccCccchhHHH-hhc
Confidence 9995311 000001110 001111111 1223466 789999999999876554447887776421 1211 233
Q ss_pred eeeEEEEEEe--eCCEEEEEEEecCCCeeEEEEEe
Q 001165 505 QKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 505 ~~~~v~gl~W--~~~~lv~~~~~~~~~~~eLrly~ 537 (1134)
.. +..+.| .+.++++| ++..+|++.
T Consensus 374 ~~--Is~is~~~~g~~~atc------Gdr~vrv~~ 400 (420)
T KOG2096|consen 374 TT--ISSISYSSDGKYIATC------GDRYVRVIR 400 (420)
T ss_pred Cc--eeeEEecCCCcEEeee------cceeeeeec
Confidence 32 445666 46788888 445677764
No 85
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=7e-18 Score=171.30 Aligned_cols=239 Identities=13% Similarity=0.134 Sum_probs=194.9
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.+..++++|..+.|+.+|++..++++|.++++|+.-.... +.-.+ +..++..++.+.|...+|+|+.|..|.
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------CCceeeeccccccccccccCCCCceEE
Confidence 3557899999999999999999999999999999854432 11111 235678889999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC--eeEEEeccCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQIS 359 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~--~l~~tl~~h~ 359 (1134)
+||+. +|+.++.+.| |.+.|+.++|..+...++||+-|.++++||-.+. .+++.+...
T Consensus 85 vwDV~---------------TGkv~Rr~rg----H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea- 144 (307)
T KOG0316|consen 85 VWDVN---------------TGKVDRRFRG----HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA- 144 (307)
T ss_pred EEEcc---------------cCeeeeeccc----ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-
Confidence 99999 9999999998 9999999999999999999999999999998653 467777665
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.+.|.++..... .+++|+ +++.+|++.|++..-.-+|.-.-+.|+. +...+.++.|+++++-|-.+|+.
T Consensus 145 ~D~V~Si~v~~h------eIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl- 217 (307)
T KOG0316|consen 145 KDGVSSIDVAEH------EIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL- 217 (307)
T ss_pred cCceeEEEeccc------EEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH-
Confidence 678888887543 355555 9999999999887665565444466777 88899999999999987555543
Q ss_pred EEEeecCCCccccccccccceeeccCCCce--EEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPV--QHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V--~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
...|+||...= ...+++....++++|++||.+ +||+....
T Consensus 218 -------------------L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 218 -------------------LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred -------------------HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 67888887542 345778888999999999999 99997663
No 86
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=3.3e-17 Score=196.71 Aligned_cols=227 Identities=13% Similarity=0.105 Sum_probs=162.9
Q ss_pred cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEE
Q 001165 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVY 306 (1134)
Q Consensus 228 sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l 306 (1134)
.+|.+.+|+...... ...+. .|...+.+++|+|+ +.+||+|+.||+|+||++......... ..+.+
T Consensus 52 ~~gvI~L~~~~r~~~--v~~L~----gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-------i~~p~ 118 (568)
T PTZ00420 52 LIGAIRLENQMRKPP--VIKLK----GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-------IKDPQ 118 (568)
T ss_pred ceeEEEeeecCCCce--EEEEc----CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-------cccce
Confidence 456677776543211 11111 24578999999997 789999999999999999742211100 01233
Q ss_pred EEeecccCCCCcCeEEEEECCCCCE-EEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--
Q 001165 307 YTFCRYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 383 (1134)
Q Consensus 307 ~~l~~~~~~h~g~V~~l~fSPDG~~-Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-- 383 (1134)
.++.+ |.+.|.+++|+|++.. ||+|+.|++|+|||+.+++...++. + ...|.+++|+|++ ..+++++
T Consensus 119 ~~L~g----H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~SlswspdG----~lLat~s~D 188 (568)
T PTZ00420 119 CILKG----HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNIKG----NLLSGTCVG 188 (568)
T ss_pred EEeec----CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECCCC----CEEEEEecC
Confidence 34555 9999999999999975 5799999999999999888777775 3 4579999999999 7887765
Q ss_pred -eeEEEeCCCceEEEEecCCCccE-----E--EEec-CCEEEeeecCC----cEEeeeeeeCCCeEEEeecCCCcccccc
Q 001165 384 -SMMQWDEYGYRLYAIEEGSSERV-----L--IFSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKIL 450 (1134)
Q Consensus 384 -~i~~W~~~~~~l~~~~~~h~~~v-----~--~~s~-~k~l~S~s~d~----ti~~w~l~~~~~~l~l~~g~~~~~~~w~ 450 (1134)
++++||+++++++....+|.+.+ + .|++ ++.++|++.|+ ++++||+......+..
T Consensus 189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~------------ 256 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT------------ 256 (568)
T ss_pred CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE------------
Confidence 89999999999988888887653 1 1234 56788888774 7999998754331110
Q ss_pred ccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 451 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 451 ~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
.....+.+++.....+++|.++++|+.|+.+ +|++..+.
T Consensus 257 -----~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 257 -----MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred -----EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 1122334444444556779999999999999 99998774
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.3e-18 Score=201.78 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=155.3
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~ 281 (1134)
.+.+|.+.|.++.||..+ ++.+.+-|-+|+||.+.... ++. .+.|.+-||||+||| |.+++++|+-||.||
T Consensus 364 ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~-----CL~--~F~HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE-----CLK--VFSHNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred hhhccchhheecccccCC-eeEeccccccEEeecCCCcc-----eee--EEecCCeeEEEEecccCCCcEeecccccceE
Confidence 467999999999999875 67788899999999986432 222 134668899999999 788999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc--C-
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ--I- 358 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~--h- 358 (1134)
||++.+ .+... -..-..-|++++|+|||+..++|..+|.++++++.+.++.....- +
T Consensus 436 iWsI~d---------------~~Vv~-----W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 436 LWSISD---------------KKVVD-----WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred EeecCc---------------CeeEe-----ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999983 22111 011347799999999999999999999999999999887665432 1
Q ss_pred ----CCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecCCC---ccE-EEEec-CCEEEeeecCCcEEee
Q 001165 359 ----SLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSS---ERV-LIFSF-GKCCLNRGVSGMTYAR 427 (1134)
Q Consensus 359 ----~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~h~---~~v-~~~s~-~k~l~S~s~d~ti~~w 427 (1134)
....|+++.|.|.... +.|+|.. .|+++|.+...++..++|.. .++ ..|+. |+.+++++.|.-+++|
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred CccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 0126999999987632 4677654 99999998888888877643 234 56777 9999999999999999
Q ss_pred eeee
Q 001165 428 QVIY 431 (1134)
Q Consensus 428 ~l~~ 431 (1134)
+...
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 9643
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8.9e-18 Score=186.69 Aligned_cols=227 Identities=15% Similarity=0.199 Sum_probs=177.7
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEecc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~ 286 (1134)
+..|.++.|..||+++|++...|.|.+++...... ...+. .+..++..+.|+|++. .+++|++|+.+++||++
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i--LR~~~----ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI--LRQLY----AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH--HHHHh----hccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 45688999999999999999999999988543111 11111 2456788899999655 57788999999999999
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCC-eeEEEeccCCCCcee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSIS 364 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~-~l~~tl~~h~~~~V~ 364 (1134)
+......+.+ |+..|.|.+|+| .+..++|||.||+|++||+... ..+.++. | ..+|.
T Consensus 142 ---------------~a~v~~~l~~----htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe 200 (487)
T KOG0310|consen 142 ---------------TAYVQAELSG----HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVE 200 (487)
T ss_pred ---------------CcEEEEEecC----CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCcee
Confidence 5555555666 999999999999 4668999999999999999765 4455554 3 45899
Q ss_pred eeEEcCCCCCCcceEEEcc--eeEEEeCC-CceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 365 SPIVKPNQDCKYEPLMSGT--SMMQWDEY-GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs--~i~~W~~~-~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
++.+-|.| ..+++++ .+++||+. |++++.....|...|.++.+ +..++|++-|+.++++++.. -++
T Consensus 201 ~vl~lpsg----s~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~--~Kv-- 272 (487)
T KOG0310|consen 201 SVLALPSG----SLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN--YKV-- 272 (487)
T ss_pred eEEEcCCC----CEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc--eEE--
Confidence 99999998 7787755 99999997 66777666669889977777 57899999999999998321 110
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
.. -..-.+||-++++|||++.+++|..+|.+
T Consensus 273 ----------------v~-s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 273 ----------------VH-SWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred ----------------EE-eeecccceeeEEecCCCceEEEeccccee
Confidence 11 11234689999999999999999999988
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1e-16 Score=161.32 Aligned_cols=256 Identities=15% Similarity=0.165 Sum_probs=176.9
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
...+.+|+|+|.|.+.|+|+...+.||-....-....+.-....++.....+. ...|+|.|.|.+|||+|..||+|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr----~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKR----NKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeee----ccccCccEEEEEecCccCeEEec
Confidence 35677999999999999999999999876653221111111111110111112 22389999999999999999999
Q ss_pred ECCCcEEEEecCCCeeEE-----EeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEecCCCccE
Q 001165 336 WKSRGLTVWSVSGCRLMS-----TIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERV 406 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~-----tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~~h~~~v 406 (1134)
+.|.+|++--.....+.. .+..| .+.|..++|-.+.++....+++++ .+.+=|-..++-+....||++.|
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 999999997654322111 12223 678999999766555557888876 56666777888899999999999
Q ss_pred EE-Eec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeecc---CCCceEEEEEcCCCCEEEEEe
Q 001165 407 LI-FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---QNWPVQHVAASKDGMFLAVAG 481 (1134)
Q Consensus 407 ~~-~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~---h~~~V~~va~SpdG~~LAsgg 481 (1134)
++ +++ +-.++||+.|.+++.||+..... +.. +-..+.+ .+..|.++++.|.|+.||+|-
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~-v~~---------------l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSC-VNT---------------LDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccce-eee---------------ccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 55 455 77889999999999999764332 100 0111221 135699999999999999999
Q ss_pred CCCeE-EEEccCCcE-EEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 482 LHGLI-LYDIRQKKW-RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 482 ~dG~i-lwd~~sg~W-k~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.|... +||++.++- ..|-. |..++.+..+.-...++++|.|. ..|++-+.+
T Consensus 251 ~dssc~lydirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd-----~~ikltdlq 303 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYD-----MKIKLTDLQ 303 (350)
T ss_pred CCCceEEEEeeCCceeeeeCC--CccceeEEEeCCCceEEEEeccc-----ceEEEeecc
Confidence 99988 999999863 23332 33335555666567789998664 567777765
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=1e-17 Score=184.73 Aligned_cols=283 Identities=16% Similarity=0.193 Sum_probs=206.0
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc----cc------ceecc-ccc-CCCCCeEEEEECCCCCEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK----LA------EFIKI-DKE-LGSGDAVCASIAPEQQIL 271 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~----~~------~~~~~-~~~-~~~~~~~~va~spdg~ll 271 (1134)
...|.-++.+|+++|+......++.||++.-|++...... .. ..... ..+ .|...+.|+++||||++|
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 3468889999999999999999999999999987543211 00 01110 112 456789999999999999
Q ss_pred EEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee
Q 001165 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 351 (1134)
Q Consensus 272 AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l 351 (1134)
|+|+.|..|.||+.+ +.+.++++++ |.+.|.+++|--.-..|.+++.|++|++|++.....
T Consensus 218 atgg~d~~v~Iw~~~---------------t~ehv~~~~g----hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCD---------------TLEHVKVFKG----HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred EecCCCceEEEecCc---------------ccchhhcccc----cccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 999999999999999 8888888888 999999999998888999999999999999987777
Q ss_pred EEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec--CCEEEeeecCCcEEe
Q 001165 352 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYA 426 (1134)
Q Consensus 352 ~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~--~k~l~S~s~d~ti~~ 426 (1134)
+.++-+| .+.|.++....-+ ..+..|. ++++|.+.. +--.+..+|.+.+-+..| ...++|||.+|.|.+
T Consensus 279 vetlyGH-qd~v~~IdaL~re----R~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 279 VETLYGH-QDGVLGIDALSRE----RCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred HHHHhCC-ccceeeechhccc----ceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 7888887 6778887665543 3333343 999999833 223344566667755556 678899999999999
Q ss_pred eeeeeCCCeEEEeecCCCccccccccccce-eeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccce
Q 001165 427 RQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE 504 (1134)
Q Consensus 427 w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~-~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e 504 (1134)
|++..... +++.+-. |...|. .-.+++..|++++..|....+|+|+.+|.+ +|-+..+. +.+ +...+
T Consensus 353 Ws~~KKkp-lf~~~~A--------Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~-r~i-~~l~~ 421 (479)
T KOG0299|consen 353 WSLLKKKP-LFTSRLA--------HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL-RAI-NLLYS 421 (479)
T ss_pred eeecccCc-eeEeecc--------ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc-ccc-ceeee
Confidence 99876443 2222110 000111 123445679999999999999999999999 99998872 111 11122
Q ss_pred eeeE--EEEEEee--CCEEEEE
Q 001165 505 QKIQ--SKGLLWL--GKIIVVC 522 (1134)
Q Consensus 505 ~~~~--v~gl~W~--~~~lv~~ 522 (1134)
-.+. |..++|. ++.++++
T Consensus 422 ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccEEEEEEEccCCCEEEEe
Confidence 2222 5567775 4556665
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=198.54 Aligned_cols=266 Identities=15% Similarity=0.199 Sum_probs=209.0
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEE-eecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYT-FCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~-l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
..++|..|+ ...+++|+.|++|++|+.. .+..+.+ +.| |.+.|.++++..-+..|++|
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~---------------~~~~i~~~l~G----H~g~V~~l~~~~~~~~lvsg 267 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLN---------------NGYLILTRLVG----HFGGVWGLAFPSGGDKLVSG 267 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecc---------------cceEEEeeccC----CCCCceeEEEecCCCEEEEE
Confidence 556788887 5579999999999999998 6777777 777 99999999998878899999
Q ss_pred ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-
Q 001165 336 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF- 411 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~- 411 (1134)
+.|.+++|||..++.+.+++.+| .+.|..+...+ ..+.+|+ ++++|+++++.++.+..+|.+.|.++..
T Consensus 268 S~D~t~rvWd~~sg~C~~~l~gh-~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 268 STDKTERVWDCSTGECTHSLQGH-TSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred ecCCcEEeEecCCCcEEEEecCC-CceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 99999999999999999999988 66777776644 3456666 9999999999999999999999977777
Q ss_pred CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 412 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 412 ~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
+..+++|+.|+++++|++.+++- ..++.+|+..|.++.+.+. .++.+|+.|+.| +||+
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred CCEEEEEecCceEEEEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 88999999999999999875543 5678899999999988766 899999999999 9999
Q ss_pred cCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecC--CccEEEEecCCEEEE
Q 001165 491 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDYILV 568 (1134)
Q Consensus 491 ~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~--~~~~~l~~~~d~llv 568 (1134)
.+++ +......+.. ..+.++.-++++++.+ ..+..|++|+... ...+....-+ ..+.++......++.
T Consensus 400 ~~~~-~c~~tl~~h~-~~v~~l~~~~~~Lvs~-----~aD~~Ik~WD~~~---~~~~~~~~~~~~~~v~~l~~~~~~il~ 469 (537)
T KOG0274|consen 400 RTKR-KCIHTLQGHT-SLVSSLLLRDNFLVSS-----SADGTIKLWDAEE---GECLRTLEGRHVGGVSALALGKEEILC 469 (537)
T ss_pred Cchh-hhhhhhcCCc-ccccccccccceeEec-----cccccEEEeeccc---CceeeeeccCCcccEEEeecCcceEEE
Confidence 9883 2211122222 2345677778888887 3445899997742 1233333322 223334444467777
Q ss_pred EEcCCeEEEEEEE
Q 001165 569 TYRPFDVHIFHVK 581 (1134)
Q Consensus 569 ~~~d~~i~l~~~~ 581 (1134)
.+.++.+.+|++.
T Consensus 470 s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 470 SSDDGSVKLWDLR 482 (537)
T ss_pred EecCCeeEEEecc
Confidence 8999999999886
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.2e-18 Score=198.53 Aligned_cols=233 Identities=18% Similarity=0.185 Sum_probs=181.1
Q ss_pred CCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeee
Q 001165 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1134)
Q Consensus 218 p~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l 297 (1134)
|.++++.+++.||.+.+|+.........+.....--.|..-+..++...+++.+++++.|.+|++|+.....
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence 345679999999999999986433211111000000133455567777789999999999999999987321
Q ss_pred eccCcceEEEEeecccCCCCcCeEEEEE-CCCCCEEEEEECCCcEEEEecCCC--eeE--------EEec-cCCCCceee
Q 001165 298 YDWGMREVYYTFCRYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGC--RLM--------STIR-QISLSSISS 365 (1134)
Q Consensus 298 ~~~~~~~~l~~l~~~~~~h~g~V~~l~f-SPDG~~Lasg~~Dg~I~vWdv~~~--~l~--------~tl~-~h~~~~V~s 365 (1134)
.-++.++.. |+.-|.|++. -++...+||||-|+.|.|||+..+ +++ +++. |+ ..+|.+
T Consensus 107 -----~~c~stir~----H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYS 176 (735)
T KOG0308|consen 107 -----TFCMSTIRT----HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYS 176 (735)
T ss_pred -----chhHhhhhc----ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceee
Confidence 023333333 9999999999 889999999999999999999866 233 2333 33 678999
Q ss_pred eEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEe
Q 001165 366 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 439 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~ 439 (1134)
++.++.+ ..+++|+ .+++||+.+++-++.++||++.| +.++. |+.++|+|.||+|++||+.+...
T Consensus 177 LA~N~t~----t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC----- 247 (735)
T KOG0308|consen 177 LAMNQTG----TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC----- 247 (735)
T ss_pred eecCCcc----eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce-----
Confidence 9999988 7888888 78999999999999999999988 44445 99999999999999999877554
Q ss_pred ecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 440 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 440 ~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
..+|..|...|+++..+|+=+++.+||+||.| .=|+.+
T Consensus 248 ---------------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 ---------------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ---------------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 67899999999999999999999999999999 656554
No 93
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=4e-17 Score=196.05 Aligned_cols=226 Identities=11% Similarity=0.044 Sum_probs=162.7
Q ss_pred cCCCcccEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCc--ccc-ceecccccCCCCCeEEEEECCCCCE-EEEeeeCC
Q 001165 204 KFPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGL--KLA-EFIKIDKELGSGDAVCASIAPEQQI-LAVGTRRG 278 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~--~~~-~~~~~~~~~~~~~~~~va~spdg~l-lAsG~~dg 278 (1134)
+.+|.+.|.+++|+|+ ++.+++++.||++.+|++..... ... ..... .-.|...+.+++|+|++.. +|+|+.||
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 5678899999999997 78999999999999999864321 000 00000 0124567999999999875 57999999
Q ss_pred eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC
Q 001165 279 VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 358 (1134)
Q Consensus 279 ~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h 358 (1134)
+|+|||+. +++....+. |.+.|.+++|+|||+.|++++.|+.|+|||+.++..+.++.+|
T Consensus 149 tIrIWDl~---------------tg~~~~~i~-----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 149 FVNIWDIE---------------NEKRAFQIN-----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred eEEEEECC---------------CCcEEEEEe-----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999998 555444432 5578999999999999999999999999999999888889887
Q ss_pred CCCcee-----eeEEcCCCCCCcceEEEcc-------eeEEEeCCC-ceEEEEec--CCCccEE-EEec--CCEEEeeec
Q 001165 359 SLSSIS-----SPIVKPNQDCKYEPLMSGT-------SMMQWDEYG-YRLYAIEE--GSSERVL-IFSF--GKCCLNRGV 420 (1134)
Q Consensus 359 ~~~~V~-----sv~~sp~~~~~~~~l~sgs-------~i~~W~~~~-~~l~~~~~--~h~~~v~-~~s~--~k~l~S~s~ 420 (1134)
.+.+. ...|++++ ..+++++ ++++||++. .+.+.... .+.+.+. .+.+ +..+++|+.
T Consensus 209 -~g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 209 -DGGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred -cCCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 33332 23345666 6666643 489999984 44444332 2233331 2222 778899999
Q ss_pred CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCC
Q 001165 421 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 474 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG 474 (1134)
|+++++|++..+... ....+. +..|++.++|.|+.
T Consensus 284 D~tIr~~e~~~~~~~------------------~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGSIR------------------KVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCcEE------------------eecccc-cCCCccceEEcccc
Confidence 999999998654221 122333 66789999999954
No 94
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=2.4e-15 Score=173.04 Aligned_cols=315 Identities=12% Similarity=0.064 Sum_probs=190.3
Q ss_pred CeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCce---EEEEEeCCCEEEEEEEEecCcceecCC
Q 001165 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGG 107 (1134)
Q Consensus 31 g~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~---~Lav~t~dg~l~lw~l~~~~~~~~~~~ 107 (1134)
+.++|.+....|.+||-.+..+ ..... .|.+.++++.|-|+++ .+++|..||.|++|.+.... -+..
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i-~t~l~------GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~-~~~i-- 94 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILI-VTTLD------GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY-LIKI-- 94 (764)
T ss_pred cceEEecCCceEEEeCccccee-EEecc------CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh-eEEE--
Confidence 4477788888999999875421 22221 2457899999999998 89999999999999997321 1111
Q ss_pred CCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCcc---ccceeccccCCCccccccccc
Q 001165 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF---YGAFELVHSSNDSSVAALSHH 184 (1134)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~---~~~~~~~~~~~~~~~i~~i~~ 184 (1134)
..++++...+.|+.-....+.+..++|.+.+|+-.+.. ...++......-..++..++.
T Consensus 95 ------------------~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~ 156 (764)
T KOG1063|consen 95 ------------------YTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKN 156 (764)
T ss_pred ------------------EeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhcc
Confidence 01112223344554333333333578888875542221 001110000000001111110
Q ss_pred ------cCCCc-----cccccCCCcccccccCCCcccEEEEEEcCCCC---eEEEEEcCCeEEEEEeccCCccc------
Q 001165 185 ------FPSNG-----LASVDTSGAFVSDHKFPISSAIIWLELCLPMR---LLFVLYSNGQLMSCSVSKKGLKL------ 244 (1134)
Q Consensus 185 ------~~~~~-----l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~---~la~~~sDG~v~l~~~~~~~~~~------ 244 (1134)
..++. +.+.+.+.-.....+.+|...|.+++|...+. ++|+++-|..|++|.+.-.+...
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~ 236 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED 236 (764)
T ss_pred CCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc
Confidence 00000 01111111112235678999999999998876 78888889999999984322000
Q ss_pred -------------cceec------ccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccccee-eeeeeccCcce
Q 001165 245 -------------AEFIK------IDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGMRE 304 (1134)
Q Consensus 245 -------------~~~~~------~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~-~l~l~~~~~~~ 304 (1134)
...+. .....|.+-+.++-|+|.+..|.+++.|.++.+|..++.++... .+.+ |+
T Consensus 237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl-----Ge 311 (764)
T KOG1063|consen 237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL-----GE 311 (764)
T ss_pred ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe-----ec
Confidence 00000 00011345688999999998899999999999999986654332 1221 11
Q ss_pred EEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe---eEEEeccCCCCceeeeEEcCCCCCCcceEEE
Q 001165 305 VYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMS 381 (1134)
Q Consensus 305 ~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~---l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s 381 (1134)
+. +..+.-...-|+|+++.+++-+.-|++++|-..... ....+.|| ...|.+++++|.| ++++|
T Consensus 312 ----~g----g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH-~~~V~dv~W~psG----eflLs 378 (764)
T KOG1063|consen 312 ----VG----GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH-VDGVKDVDWDPSG----EFLLS 378 (764)
T ss_pred ----cc----ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc-cccceeeeecCCC----CEEEE
Confidence 11 256778899999999999999999999999843322 22234455 8899999999999 88888
Q ss_pred cc---eeEEEeCC
Q 001165 382 GT---SMMQWDEY 391 (1134)
Q Consensus 382 gs---~i~~W~~~ 391 (1134)
.+ +-+++..-
T Consensus 379 vs~DQTTRlFa~w 391 (764)
T KOG1063|consen 379 VSLDQTTRLFARW 391 (764)
T ss_pred eccccceeeeccc
Confidence 76 66665543
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.9e-17 Score=173.83 Aligned_cols=282 Identities=13% Similarity=0.141 Sum_probs=216.1
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.+.+|...|..++-......+.+++.|.+..+|.+....- .+.. .+.+.+.|+.|+|.+.++++|+.|++-.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-------GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-------GHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-------ccccceeeEEeccccceEEEccCCcchH
Confidence 4678999999999888888999999999999999865331 1111 2457899999999999999999999999
Q ss_pred EEecc------cc---ccc------------eeeee--eeccC--cceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 282 LYDLA------ES---ASL------------IRTVS--LYDWG--MREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 282 lwd~~------~~---~~~------------~~~l~--l~~~~--~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
||... .+ +.+ .+... ....+ -..++..++| |.+.|.+..|-..|+.+++|+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg----H~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG----HRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec----cccceEehhhhcCcceeeeee
Confidence 99832 10 000 00000 00000 1124445666 999999999999999999999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC-ceEEEEecCCCccEEEEec-
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF- 411 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~-~~l~~~~~~h~~~v~~~s~- 411 (1134)
.|++..+||+.++.++..+.|| ..+.+.+.-+|.. ..+++.+ +.++||... -+-+.+++||++.|....|
T Consensus 292 WDRTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNILTGH-DSELTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred ccccceeeeeccCceeccccCc-chhccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 9999999999999999999998 7789999999987 7888877 889999853 3557788999999955555
Q ss_pred -CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 412 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
+..++||+.|.++++||+.+... |...+....+++-+++|..+..+|.--++..+ +||
T Consensus 367 ~dd~vVSgSDDrTvKvWdLrNMRs--------------------plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 367 TDDRVVSGSDDRTVKVWDLRNMRS--------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cCCceeecCCCceEEEeeeccccC--------------------cceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 88899999999999999876555 44445566789999999999999999999999 999
Q ss_pred ccCCcEEEeCC-ccceeeeEEEEEEeeCCEEE
Q 001165 490 IRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIV 520 (1134)
Q Consensus 490 ~~sg~Wk~F~~-~~~e~~~~v~gl~W~~~~lv 520 (1134)
++..+.-.... ..|-+.-.|....|..+..+
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcc
Confidence 99887544431 12222245667788766544
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.2e-16 Score=166.63 Aligned_cols=277 Identities=14% Similarity=0.152 Sum_probs=199.6
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEE
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ll 146 (1134)
.+.+.++.|++||..+++++.|.+++|||...+...-... ..+. ...+.+|......++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~----------------skky-----G~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN----------------SKKY-----GVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee----------------cccc-----cccEEEEecCCceEE
Confidence 4678999999999999999999999999997653211110 0000 112445555555555
Q ss_pred EEec--CCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEE
Q 001165 147 LGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 147 v~t~--dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la 224 (1134)
.++. |.+|+.++......-+ .+.+|...|+++.-+|-++.|.
T Consensus 73 ~sStk~d~tIryLsl~dNkylR------------------------------------YF~GH~~~V~sL~~sP~~d~Fl 116 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR------------------------------------YFPGHKKRVNSLSVSPKDDTFL 116 (311)
T ss_pred EccCCCCCceEEEEeecCceEE------------------------------------EcCCCCceEEEEEecCCCCeEE
Confidence 5554 5677776654432221 3668999999999999999999
Q ss_pred EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc-cceeeeeeeccCcc
Q 001165 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGMR 303 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~-~~~~~l~l~~~~~~ 303 (1134)
+++-|.++++|++.... .++.. +...-.++||.|+|-++|+|...+.|++||++... ++..++.+.+
T Consensus 117 S~S~D~tvrLWDlR~~~---cqg~l-----~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---- 184 (311)
T KOG1446|consen 117 SSSLDKTVRLWDLRVKK---CQGLL-----NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---- 184 (311)
T ss_pred ecccCCeEEeeEecCCC---CceEE-----ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC----
Confidence 99999999999997432 22221 22344578999999999999998899999998542 4444433221
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCc--eeeeEEcCCCCCCcceEEE
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS--ISSPIVKPNQDCKYEPLMS 381 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~--V~sv~~sp~~~~~~~~l~s 381 (1134)
+.....+.|.|||||++|..+...+.+.+-|.+.|...+++.++..+. --+..|.|++ +.+++
T Consensus 185 -----------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~ 249 (311)
T KOG1446|consen 185 -----------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLS 249 (311)
T ss_pred -----------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEE
Confidence 245678999999999999999999999999999999999998752221 2467799999 99998
Q ss_pred cc---eeEEEeCCCceEEEEecC-CCccE--EEEec-CCEEEeeecCCcEEeeee
Q 001165 382 GT---SMMQWDEYGYRLYAIEEG-SSERV--LIFSF-GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 382 gs---~i~~W~~~~~~l~~~~~~-h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l 429 (1134)
|+ ++.+|+.++++.+....+ +...+ ..|+| .-..+| .+..+..|-.
T Consensus 250 gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p 302 (311)
T KOG1446|consen 250 GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS--ASSNLVFWLP 302 (311)
T ss_pred ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--cCceEEEEec
Confidence 87 899999999999988877 44444 55666 333334 3445667753
No 97
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.78 E-value=2.3e-18 Score=190.91 Aligned_cols=277 Identities=14% Similarity=0.134 Sum_probs=206.3
Q ss_pred cccccceEEEee--e-CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCccccccc
Q 001165 128 FAEKGLSVSNIV--S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (1134)
Q Consensus 128 ~~~~~~~V~~~s--~-d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~ 204 (1134)
+.++...|+++. + .+..+++++.|+.|.+|..-+. +.. ++ ..
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--~~~-----------lr----------------------tf 254 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--RRC-----------LR----------------------TF 254 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--cce-----------eh----------------------hh
Confidence 445555666543 3 4566788888999988643221 111 11 35
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC-CEEEEeeeCCeEEEE
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGVVELY 283 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~V~lw 283 (1134)
.+|..+|.++.|+.+|..|.+++=|+.+.+|++..+.-.. ... ....++|+.|+|++ ..+.+|+.|+.|+.|
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~--~f~-----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS--RFH-----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE--EEe-----cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 6899999999999999999999999999999987543221 111 12557899999998 789999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
|+. +++.+.+... |.++|..+.|-|+|++++++++|++++||+...+..+..+...+....
T Consensus 328 DiR---------------s~kvvqeYd~----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsm 388 (503)
T KOG0282|consen 328 DIR---------------SGKVVQEYDR----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTM 388 (503)
T ss_pred ecc---------------chHHHHHHHh----hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccC
Confidence 999 6776666554 999999999999999999999999999999987776655544333356
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCC-ce--EEEEecCCCcc---E-EEEec-CCEEEeeecCCcEEeeeeeeC
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YR--LYAIEEGSSER---V-LIFSF-GKCCLNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~-~~--l~~~~~~h~~~---v-~~~s~-~k~l~S~s~d~ti~~w~l~~~ 432 (1134)
.++..+|++ ..++.-+ .+.++.+.. ++ .-..+.||... + +.|+| |+.++||+.||.+.+||..+.
T Consensus 389 P~~~~~P~~----~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 389 PCLTLHPNG----KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred cceecCCCC----CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 678889988 5555433 555555422 11 11223455322 2 67888 999999999999999995543
Q ss_pred CCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC-CCEEEEEeCCCeE-EEE
Q 001165 433 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 433 ~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd-G~~LAsgg~dG~i-lwd 489 (1134)
. +...+..|+.++..+.|.|- -..+|++|-||.| +|+
T Consensus 465 k--------------------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 K--------------------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred h--------------------hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 3 46778899999999999985 5688999999999 996
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2e-16 Score=168.21 Aligned_cols=285 Identities=12% Similarity=0.103 Sum_probs=200.7
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeC--CCEEEEEEEEec
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SLYLHIFKVQIT 99 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~--dg~l~lw~l~~~ 99 (1134)
..+.|+++|.++++++ |++++|+|+. .+. ..++..+ .++| +..++|-.....+.-++. |.+||.-++...
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~-~g~----~~~ti~s-kkyG-~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSL-SGK----QVKTINS-KKYG-VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcC-CCc----eeeEeec-cccc-ccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 4489999999888865 5699999996 332 2233222 1344 457888888888777777 778999999875
Q ss_pred CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccc
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i 179 (1134)
..-.|.++|.. .+. -.+++|.++.+++++-|.+|+.|+.......-.
T Consensus 91 kylRYF~GH~~---~V~------------------sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------------ 137 (311)
T KOG1446|consen 91 KYLRYFPGHKK---RVN------------------SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------------ 137 (311)
T ss_pred ceEEEcCCCCc---eEE------------------EEEecCCCCeEEecccCCeEEeeEecCCCCceE------------
Confidence 44444544432 111 134566678899999999999754432211100
Q ss_pred ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCe
Q 001165 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDA 259 (1134)
Q Consensus 180 ~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1134)
+ +...-..++|+|+|-.||++...+.|.++++...+...-+.+.... ....+.
T Consensus 138 ------------------------l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew 190 (311)
T KOG1446|consen 138 ------------------------L--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEW 190 (311)
T ss_pred ------------------------E--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-CCccce
Confidence 0 0011123689999999999998889999999765433322222110 123567
Q ss_pred EEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC
Q 001165 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
+.+.|||||+.|..++.++.+.+.|.= +|..+.++.++..+-.-+ .+.+|+|||+++.+|+.||
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf---------------~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAF---------------DGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEcc---------------CCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCC
Confidence 899999999999999999999999876 566666666522111122 5678999999999999999
Q ss_pred cEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCce
Q 001165 340 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYR 394 (1134)
Q Consensus 340 ~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~ 394 (1134)
+|.+|++.++..+..+++.+..++.++.|+|.- ..++|++ .+.+|-+...+
T Consensus 255 ~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~----~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 255 TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY----AMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred cEEEEEcCCCcEeeEecCCCCCCccccccCCce----eeeeecCceEEEEeccccc
Confidence 999999999999999988546789999999976 6777766 78889876443
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.77 E-value=1.1e-17 Score=175.43 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=167.5
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccC----Cccc-----cc-ee--cccccCCCCCeEEEEECCCCCE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK----GLKL-----AE-FI--KIDKELGSGDAVCASIAPEQQI 270 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~----~~~~-----~~-~~--~~~~~~~~~~~~~va~spdg~l 270 (1134)
.++.|++++.+.+|||||.++|+++.|..+.++++..- .+.+ .+ .+ -...+.|.++++++.|+|...+
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 46789999999999999999999999999999988521 1110 11 11 1112346789999999999999
Q ss_pred EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe
Q 001165 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 350 (1134)
Q Consensus 271 lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~ 350 (1134)
|++|+.|++|++||..+.+.. +.+. .+ ....+|.+++|.|.|.+|++|-+-.+++++|+.+-+
T Consensus 187 LiS~srD~tvKlFDfsK~saK-rA~K-----------~~-----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAK-RAFK-----------VF-----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred EEeccCCCeEEEEecccHHHH-HHHH-----------Hh-----hccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 999999999999999844311 1100 11 146789999999999999999999999999999988
Q ss_pred eEEEec--cCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec-CCCc-cEE--EEec-CCEEEeeec
Q 001165 351 LMSTIR--QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSE-RVL--IFSF-GKCCLNRGV 420 (1134)
Q Consensus 351 l~~tl~--~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~-~h~~-~v~--~~s~-~k~l~S~s~ 420 (1134)
++.+-. ..|+..|+++.+++.+ ..-++|+ .+++||.-+++++..+. .|.+ .|. .|.- +|.++|.+.
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~----~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTG----SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred EeeecCcccccccceeEEEecCCc----cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 765532 2348899999999999 8888888 89999998888887653 4543 343 3444 999999999
Q ss_pred CCcEEeeeeeeCCCeEEEeecC
Q 001165 421 SGMTYARQVIYGEDRLLVVQSE 442 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~ 442 (1134)
|.++++|.+.++.. +..|.|.
T Consensus 326 DS~vkLWEi~t~R~-l~~YtGA 346 (430)
T KOG0640|consen 326 DSTVKLWEISTGRM-LKEYTGA 346 (430)
T ss_pred cceeeeeeecCCce-EEEEecC
Confidence 99999999877654 4444444
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.3e-17 Score=190.78 Aligned_cols=268 Identities=17% Similarity=0.202 Sum_probs=185.7
Q ss_pred HhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecC-cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCC
Q 001165 65 QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (1134)
Q Consensus 65 ~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~ 143 (1134)
.|.+..+.++|.|||..|.++++||.|++|+..... ++-. +......|.++++...
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-----------------------i~~~g~~v~~ia~~s~ 67 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-----------------------IDISGELVSSIACYSN 67 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch-----------------------hhccCceeEEEeeccc
Confidence 356678999999999999999999999999985431 1110 1102245778888888
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
.+++|+.+++|.++..+...
T Consensus 68 ~f~~~s~~~tv~~y~fps~~------------------------------------------------------------ 87 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGE------------------------------------------------------------ 87 (933)
T ss_pred ceEEeeccceEEEeeCCCCC------------------------------------------------------------
Confidence 89999999988876544221
Q ss_pred EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 224 a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
.+|-+.- ..-++.+++|+.+|+++|.|+.|-.|++-+++ ..
T Consensus 88 ----~~~iL~R--------------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~---------------D~ 128 (933)
T KOG1274|consen 88 ----EDTILAR--------------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD---------------DS 128 (933)
T ss_pred ----ccceeee--------------------eeccceEEEEecCCcEEEeecCceeEEEEecc---------------cc
Confidence 0111110 01456789999999999999999999999998 44
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
...+.+++ |.++|.+|.|+|.|.+||+.+-||.|++|++..+.+..++.+- .|+. +...+-.
T Consensus 129 s~~~~lrg----h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v----------~k~n----~~~~s~i 190 (933)
T KOG1274|consen 129 SQEKVLRG----HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV----------DKDN----EFILSRI 190 (933)
T ss_pred chheeecc----cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC----------Cccc----cccccce
Confidence 44555666 9999999999999999999999999999999999888888662 1222 2221212
Q ss_pred -eeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCC
Q 001165 384 -SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 462 (1134)
Q Consensus 384 -~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~ 462 (1134)
....|.+.++++... +.|++|++++....+. .+. + ....+.
T Consensus 191 ~~~~aW~Pk~g~la~~--------------------~~d~~Vkvy~r~~we~-~f~---------------L--r~~~~s 232 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVP--------------------PVDNTVKVYSRKGWEL-QFK---------------L--RDKLSS 232 (933)
T ss_pred eeeeeecCCCCeEEee--------------------ccCCeEEEEccCCcee-hee---------------e--cccccc
Confidence 455688877776544 3344455444221111 000 0 011223
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCC
Q 001165 463 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK 517 (1134)
Q Consensus 463 ~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~ 517 (1134)
..+..++|||+|+|||+++.||.| +||+.+. +.||..-.|.++.|-.+
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~-------~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDTH-------ERHEFKRAVCCEAWKPN 281 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCCcEEEEecccc-------hhccccceeEEEecCCC
Confidence 338899999999999999999999 9999872 22444455777888643
No 101
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.76 E-value=7.9e-16 Score=176.93 Aligned_cols=438 Identities=13% Similarity=0.093 Sum_probs=273.1
Q ss_pred EEEeec-Ce-EEEEEcCC-eEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCce---EEEEEeCCCEEEEEEEEe
Q 001165 25 IYFKVN-NG-LLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQI 98 (1134)
Q Consensus 25 v~fS~d-g~-llAs~s~~-~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~---~Lav~t~dg~l~lw~l~~ 98 (1134)
+++.++ ++ ++|.++++ .|.|+.-. . .++.|-.+--.|.+.+..++|+.-+. +||+++.|.+||||++..
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~~~s~~-~----d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~ 225 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVDLYSSS-A----DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVL 225 (764)
T ss_pred HhhhccCCcEEEEecCcceEEEEeccC-C----cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEe
Confidence 344554 33 45555544 56666543 1 22333222222345678888876554 899999999999999976
Q ss_pred cC-cc-eecCC--CCCCCcce----eeEEEeeceeeccccccceEEEe--eeCCCeEEEEecCCcEEEEecCCcccccee
Q 001165 99 TE-KS-IQIGG--KQPSGLFF----IKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (1134)
Q Consensus 99 ~~-~~-~~~~~--~~~~~~~~----~s~~~~~~~~~~~~~~~~~V~~~--s~d~~~llv~t~dg~v~~~~wd~~~~~~~~ 168 (1134)
.. .. ..... .....++. ..+.+.......+.|++.-|.++ .+.+..|++++.|.++.+|.-+..++.-..
T Consensus 226 ~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 226 GDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred cCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 54 11 10000 00011111 12223333333455777777665 566778999999999887543332211100
Q ss_pred ccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccccee
Q 001165 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1134)
Q Consensus 169 ~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~ 248 (1134)
.++ .+ ...+..+...+..|+|+++.++.-+..|-.++|.......+.....
T Consensus 306 ---------~vR------------lG--------e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 306 ---------VVR------------LG--------EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred ---------EEE------------ee--------cccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence 000 00 1123445678899999999988888889999998332222222211
Q ss_pred cccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC
Q 001165 249 KIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD 328 (1134)
Q Consensus 249 ~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD 328 (1134)
.. .|...++.++|+|.|.++.+.+.|.|-|||-.-......|.+. .+.-|.-..+|++|-+.
T Consensus 357 iS---GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia---------------RPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 357 IS---GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA---------------RPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cc---cccccceeeeecCCCCEEEEeccccceeeecccccccceeeec---------------ccccccccceeeehccC
Confidence 11 2467899999999999999999999999987541111122221 12237778999999887
Q ss_pred CCEEEEEECCCcEEEEecC-----------C----Ce-------e-------------------------E---------
Q 001165 329 NSAFAVGWKSRGLTVWSVS-----------G----CR-------L-------------------------M--------- 352 (1134)
Q Consensus 329 G~~Lasg~~Dg~I~vWdv~-----------~----~~-------l-------------------------~--------- 352 (1134)
...+++|.+..-+|+++.. + +. . .
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 6788888888888998762 1 00 0 0
Q ss_pred --------------------EEeccCCCCceeeeEEcCCCCCCcceEEEcc--------eeEEEeCCCceEEEEecCCCc
Q 001165 353 --------------------STIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGSSE 404 (1134)
Q Consensus 353 --------------------~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--------~i~~W~~~~~~l~~~~~~h~~ 404 (1134)
+.+-|| ...|++++.+|++ +.++|+. -|++|+..+-.....+.+|+-
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL 573 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL 573 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence 000033 3468899999998 8888875 688999988766667789998
Q ss_pred cE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe
Q 001165 405 RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG 481 (1134)
Q Consensus 405 ~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg 481 (1134)
.| ++|++ ++.+++.|.|++..+|....+... .+. -...+.|.-.|+.++|+||++++|+|+
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----------e~~------fa~~k~HtRIIWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----------EFR------FACLKAHTRIIWDCSWSPDEKYFATAS 637 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccch----------hhh------hccccccceEEEEcccCcccceeEEec
Confidence 88 66777 999999999999999986322110 000 112567888999999999999999999
Q ss_pred CCCeE-EEEccCCcEEEeCCccc-eeeeEEEEEEeeC------CEEEEEEEecCCCeeEEEEEeCC
Q 001165 482 LHGLI-LYDIRQKKWRVFGDITQ-EQKIQSKGLLWLG------KIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 482 ~dG~i-lwd~~sg~Wk~F~~~~~-e~~~~v~gl~W~~------~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+|..+ +|.....+-+....... .-.-.|+.+.|.+ ..+|+.+ -...+|-+|.+.
T Consensus 638 RDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavG----le~GeI~l~~~~ 699 (764)
T KOG1063|consen 638 RDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVG----LEKGEIVLWRRK 699 (764)
T ss_pred CCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEE----ecccEEEEEecc
Confidence 99999 99987764222222111 1112355566642 2233332 244678888764
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.76 E-value=6.1e-17 Score=180.03 Aligned_cols=296 Identities=14% Similarity=0.144 Sum_probs=196.3
Q ss_pred ccccccceEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCccccccc
Q 001165 127 PFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (1134)
Q Consensus 127 ~~~~~~~~V~~--~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~ 204 (1134)
.+.++.-.|++ +-+.|-++++|+-|-+|..|++.+....... .+ ...
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------fr---------------------~l~ 210 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------FR---------------------QLQ 210 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh----------hh---------------------ccC
Confidence 44444545555 4556789999999999999887765322110 00 011
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccc-ce---ec--ccccCCCCCeEEEEECCCCC-EEEEeeeC
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA-EF---IK--IDKELGSGDAVCASIAPEQQ-ILAVGTRR 277 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~-~~---~~--~~~~~~~~~~~~va~spdg~-llAsG~~d 277 (1134)
......|+++.||+.++.+++++....+.+++-+++..... .+ +. .....|...++|.+|+|+.+ .+.+++.|
T Consensus 211 P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D 290 (641)
T KOG0772|consen 211 PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD 290 (641)
T ss_pred cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence 23456789999999999999999888899988766543211 11 10 00112456789999999765 68899999
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC--eeEEEe
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTI 355 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~--~l~~tl 355 (1134)
|++|+|++.+..+..+.+.... ..+..-+|++++|+|||+.||+|..||.|.+|+..+. +.....
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~-------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKP-------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred CcEEEEecCCchhheeEEeecc-------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence 9999999996654433332111 1124457999999999999999999999999998432 222333
Q ss_pred ccCCCC--ceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc-eEEEEecCCCcc----EEEEec-CCEEEeeec----
Q 001165 356 RQISLS--SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSER----VLIFSF-GKCCLNRGV---- 420 (1134)
Q Consensus 356 ~~h~~~--~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~-~l~~~~~~h~~~----v~~~s~-~k~l~S~s~---- 420 (1134)
+..|.. .|+++.||++| +.|+|-+ +.++||++.. +.+.+..+-... =.+|+| .+.+++|..
T Consensus 358 k~AH~~g~~Itsi~FS~dg----~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDG----NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred eeccCCCCceeEEEecccc----chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence 443355 79999999999 8898755 9999999764 444443332222 267888 677776643
Q ss_pred --CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE--EEEc
Q 001165 421 --SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDI 490 (1134)
Q Consensus 421 --d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i--lwd~ 490 (1134)
.++..+++..+-+. ..++--.+..|..+.|.|.=+.|.+|+.||.+ +||-
T Consensus 434 ~~~g~L~f~d~~t~d~--------------------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDT--------------------VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCCceEEEEeccceee--------------------EEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 23344444222111 12222335568889999999999999999999 5553
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.5e-16 Score=168.11 Aligned_cols=236 Identities=14% Similarity=0.187 Sum_probs=183.6
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC--EEEEeeeCCeEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ--ILAVGTRRGVVE 281 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~--llAsG~~dg~V~ 281 (1134)
...|.+.|++++.+ +.++|++++|.+|.+++..+.... ..+. .+.+.++|+.|.+... .|.+|+.||.|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql--g~ll----~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL--GILL----SHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh--ccee----ccccceEEEEecCCcchhheeeecCCCcEE
Confidence 45688899988654 678999999999999998653321 1111 2458899999999886 799999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
+|+.. .-+++.++++ |++.|+.++..|.|+.-.+.+.|+.+++|++-.++.-..++-. .
T Consensus 111 iw~~~---------------~W~~~~slK~----H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~ 169 (362)
T KOG0294|consen 111 IWRVG---------------SWELLKSLKA----HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--N 169 (362)
T ss_pred EEEcC---------------CeEEeeeecc----cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--C
Confidence 99998 5677888887 9999999999999999999999999999998766543332221 1
Q ss_pred ceeeeEEcCCCCCCcceE-EEcc-eeEEEeCCCceEEEEecCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCCCeEE
Q 001165 362 SISSPIVKPNQDCKYEPL-MSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l-~sgs-~i~~W~~~~~~l~~~~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~ 437 (1134)
.-+.+.|+|.| +.+ +.+. .+-+|..++.+++..... ..++.+..| +..+++|+.|+.+++||.....
T Consensus 170 ~at~v~w~~~G----d~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---- 240 (362)
T KOG0294|consen 170 KATLVSWSPQG----DHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDT---- 240 (362)
T ss_pred cceeeEEcCCC----CEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCc----
Confidence 23448899988 544 4333 888999888777665433 244555556 7788999999999999954311
Q ss_pred EeecCCCccccccccccceeeccCCCceEEEEE--cCCCCEEEEEeCCCeE-EEEccCC
Q 001165 438 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~--SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
++..+.+|...|..+.+ .|++.||+++|.||.| +||+...
T Consensus 241 ----------------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 ----------------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ----------------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 35778899999999985 7899999999999999 9998654
No 104
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.76 E-value=2e-15 Score=167.74 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=167.9
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
+..|...+|.|....+.+....|.+++|+..+......+++-.. . ...-+.|++|.++|. +++|.++|.|.||+..
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-~-ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~- 275 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-R-EKKFVLCVTFLENGD-VITGDSGGNILIWSKG- 275 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc-c-cceEEEEEEEcCCCC-EEeecCCceEEEEeCC-
Confidence 45577889999998888888899999998877655444443221 1 125688999999997 6789999999999987
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee-----------EEEec
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-----------MSTIR 356 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l-----------~~tl~ 356 (1134)
+....++... |.|.|.+++.-.||..|- |+.|+.|..||-.=.++ +.++.
T Consensus 276 --------------~~~~~k~~~a----H~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 276 --------------TNRISKQVHA----HDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred --------------CceEEeEeee----cCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEe
Confidence 4444444333 999999999999998775 99999999998311110 01100
Q ss_pred -----------------------------cCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCc
Q 001165 357 -----------------------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE 404 (1134)
Q Consensus 357 -----------------------------~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~ 404 (1134)
+| .+....++.+|+. +.+++++ .+.+|+ +..-.|....+...
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~----~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLATHPSK----NQLLTCGQDKHVRLWN-DHKLEWTKIIEDPA 410 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEEcCCCh----hheeeccCcceEEEcc-CCceeEEEEecCce
Confidence 11 1233344444443 3344333 445555 11111222112112
Q ss_pred cEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 405 RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 405 ~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
.-..|+|...++.|...|.-.+.|..+ + + ..+....+.|++.++|||||.+||+|+.|+
T Consensus 411 ~~~~fhpsg~va~Gt~~G~w~V~d~e~---~-----------------~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 411 ECADFHPSGVVAVGTATGRWFVLDTET---Q-----------------D-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred eEeeccCcceEEEeeccceEEEEeccc---c-----------------e-eEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 223444411444444443322222211 1 0 112333388999999999999999999999
Q ss_pred eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCC--EEEEEEEecCCCeeEEEEEeC
Q 001165 485 LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 485 ~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~--~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.+ +|-+..+.-+.-.-..+.. -.++.+.|..| +++. .+.+++|.+|..
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~-----~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVS-----NSGDYEILYWKP 520 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEe-----ccCceEEEEEcc
Confidence 99 9988654333211111122 34778999744 5554 367899999944
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=181.84 Aligned_cols=265 Identities=14% Similarity=0.116 Sum_probs=202.1
Q ss_pred EeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEE
Q 001165 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (1134)
Q Consensus 137 ~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~f 216 (1134)
-+-++.+.++.|..|..|..|...++.... ...+.+..+.|+++.|
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~----------------------------------~~tLaGs~g~it~~d~ 227 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEKSEL----------------------------------ISTLAGSLGNITSIDF 227 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccchhhh----------------------------------hhhhhccCCCcceeee
Confidence 344455778888888888775544443111 1145677889999999
Q ss_pred cCCCCeEEEEEcCCeEEEEEeccCCccc-cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 217 sp~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
.+++..+...+.|+.+.+|+++...... ..+ |.+.++++.|......+++|+.|.+|++||+.
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~--------- 291 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ--------- 291 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcc-------cccceeeehhhccccceeeccccchhhhhhhh---------
Confidence 9999999999999999999997654332 222 45789999998877779999999999999998
Q ss_pred eeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCC
Q 001165 296 SLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 375 (1134)
Q Consensus 296 ~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~ 375 (1134)
...+.++.- ....+..|..+ +..++||-.|++|+.||..+..+..+.+.+| .|+++..++++
T Consensus 292 ------k~~C~kt~l-----~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g--- 353 (459)
T KOG0288|consen 292 ------KAYCSKTVL-----PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDG--- 353 (459)
T ss_pred ------hhheecccc-----ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCC---
Confidence 444444421 23345566655 6789999999999999999988888888764 79999999998
Q ss_pred cceEEEcc---eeEEEeCCCceEEEEecC------CCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCc
Q 001165 376 YEPLMSGT---SMMQWDEYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 445 (1134)
Q Consensus 376 ~~~l~sgs---~i~~W~~~~~~l~~~~~~------h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~ 445 (1134)
..+.+++ ++.+.|..++++...... |+-.-++|+| +.++++||.||.+++|++.++.....
T Consensus 354 -~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~-------- 424 (459)
T KOG0288|consen 354 -LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV-------- 424 (459)
T ss_pred -eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE--------
Confidence 6666666 889999999888776543 3333388999 88999999999999999887765311
Q ss_pred cccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 446 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 446 ~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
....+.+..|++++|+|.|.+|++++.++.+ +|
T Consensus 425 ----------l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 425 ----------LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ----------eccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 1111223369999999999999999999999 88
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=174.62 Aligned_cols=221 Identities=17% Similarity=0.225 Sum_probs=177.4
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
..+++++..+|....+.+|+.|.++.++|.. +++.+.+++| |+..|+.+.|+|+...++++
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~---------------s~q~l~~~~G----h~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKP---------------SNQILATLKG----HTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecc---------------hhhhhhhccC----cceEEEEEEeccchhheeec
Confidence 3567888888988899999999999999998 8888888888 99999999999999999999
Q ss_pred ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE----EE
Q 001165 336 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV----LI 408 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v----~~ 408 (1134)
+.|-.|+||++.........+-| ..+|+.+..+|.+ +++++++ +..+-|.++++++.......+.| .+
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 99999999999776655556656 7899999999999 9999888 44455677777666554323333 67
Q ss_pred Eec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-
Q 001165 409 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 486 (1134)
Q Consensus 409 ~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i- 486 (1134)
|+| |-.+.+|..|+.+++||+..+.. ...+-+|.+||..++||.||-|||++.+||.|
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~ 414 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVK 414 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEE
Confidence 888 88899999999999999876554 45678899999999999999999999999988
Q ss_pred EEEccCCcEEEeCCccceeeeEEE--EEEeeCCEEEEE
Q 001165 487 LYDIRQKKWRVFGDITQEQKIQSK--GLLWLGKIIVVC 522 (1134)
Q Consensus 487 lwd~~sg~Wk~F~~~~~e~~~~v~--gl~W~~~~lv~~ 522 (1134)
+||++.- +.|....-+..+.+. .+.-.+.+++++
T Consensus 415 lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 415 LWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEehhh--cccceeeccccccceeEEEcCCCCeEEee
Confidence 9999654 344433322222344 344457777775
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.74 E-value=3.1e-16 Score=171.63 Aligned_cols=279 Identities=12% Similarity=0.130 Sum_probs=207.0
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
...+.++..+|..+.+.+++.|..+.+++........ ... .+...++.+.++|+...+++++.|..|+||....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--~~~----Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--TLK----GHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--hcc----CcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 3467788888888889999999888887765432211 111 1346788999999999999999999999999874
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC-CCCceeee
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSP 366 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~sv 366 (1134)
.... . ....|.++|+.+...|.|.||.+++.||++..-|+.++.+++..... ..-.+++.
T Consensus 293 ~s~~---------------~----~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 293 SSEP---------------T----SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred ccCc---------------c----ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 3211 1 11239999999999999999999999999999999988877665442 22358999
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEee
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~ 440 (1134)
+|+||| ..+.+|. .+++||+..+.-...+.+|++.|..++| |-.+++++.|+.+++||+.....
T Consensus 354 ~fHpDg----Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n------ 423 (506)
T KOG0289|consen 354 AFHPDG----LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN------ 423 (506)
T ss_pred eEcCCc----eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc------
Confidence 999999 8888887 8999999998888888999999977777 77999999999999999876554
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEE
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII 519 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~l 519 (1134)
.+.-......+|.+++|++.|+||+++|.+=.| +++-.++.|...... ++... .....|+++.-
T Consensus 424 -------------~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~sg-~st~v~Fg~~a 488 (506)
T KOG0289|consen 424 -------------FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADHSG-LSTGVRFGEHA 488 (506)
T ss_pred -------------cceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhccc-ccceeeecccc
Confidence 122122334479999999999999999999889 888888999764321 11111 12345665543
Q ss_pred EEEEEecCCCeeEEEEEeC
Q 001165 520 VVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 520 v~~~~~~~~~~~eLrly~~ 538 (1134)
..+... +.+..+|+|..
T Consensus 489 q~l~s~--smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLAST--SMDAILRLYAL 505 (506)
T ss_pred eEEeec--cchhheEEeec
Confidence 322111 33344777753
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.74 E-value=4.4e-16 Score=161.15 Aligned_cols=276 Identities=12% Similarity=0.116 Sum_probs=200.9
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
..+++-+.+|.+|.+|-+++.|.++.||-.. .|+.+.++.| |+|.|.|+..+-+.+++++|
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~---------------nGerlGty~G----HtGavW~~Did~~s~~liTG 70 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSL---------------NGERLGTYDG----HTGAVWCCDIDWDSKHLITG 70 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEec---------------CCceeeeecC----CCceEEEEEecCCcceeeec
Confidence 3578899999999999999999999999887 7899999988 99999999999999999999
Q ss_pred ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--------eeEEEeCC-------CceEEEEec
Q 001165 336 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEY-------GYRLYAIEE 400 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--------~i~~W~~~-------~~~l~~~~~ 400 (1134)
+.|.++++||+.+|+.+.+++- ..+|..+.|++++ +.++-.. .+-+++++ +.+.+....
T Consensus 71 SAD~t~kLWDv~tGk~la~~k~--~~~Vk~~~F~~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWKT--NSPVKRVDFSFGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred cccceeEEEEcCCCcEEEEeec--CCeeEEEeeccCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 9999999999999999999876 4689999999998 5443222 56677776 444455544
Q ss_pred CCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEE
Q 001165 401 GSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 477 (1134)
Q Consensus 401 ~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~L 477 (1134)
.+.+.+ ..+.+ ++.+++|..||.+..||+.++... ...-..|+..|+.+.+|||+.++
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-------------------v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-------------------VDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-------------------eechhhhccccccccccCCcceE
Confidence 455555 44566 999999999999999999877652 33445688899999999999999
Q ss_pred EEEeCCCeE-EEEccCCc-EEEeCCccceeeeEEEEEEeeCCEEEEEEEe---------cCCCeeEEEEEeCC---CCCC
Q 001165 478 AVAGLHGLI-LYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYI---------DSSNTYELLFYPRY---HLDQ 543 (1134)
Q Consensus 478 Asgg~dG~i-lwd~~sg~-Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~---------~~~~~~eLrly~~~---~ld~ 543 (1134)
++|+.|.+. +||+.+=. -|.|.. |..+++..+.-..+.+|.++-- .+.+.+|-|+|..- .+..
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr 282 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR 282 (327)
T ss_pred EecccCccceeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence 999999999 99997742 234432 3334444455555555554211 11233555666441 1110
Q ss_pred cceeEEEecCCccEEEEecCCEEEEEEcCCeEEEEEEE
Q 001165 544 SSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 544 ~~~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~~~ 581 (1134)
+ -.+=-|-..+.+.|.|........|+.+++....
T Consensus 283 --v-kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 283 --V-KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred --c-cccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 0 0010122345667777666666677888887654
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.9e-16 Score=180.74 Aligned_cols=340 Identities=12% Similarity=0.104 Sum_probs=220.9
Q ss_pred CCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEE--EeeeCCCeEEEEecCCcE
Q 001165 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSL 154 (1134)
Q Consensus 77 PDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s~d~~~llv~t~dg~v 154 (1134)
|.+++|.+|+.||.|++|++......- ..+ .+.+ +..+..-|. .++.+++.++++++|-+|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~----s~~---~~as----------me~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP----STP---YIAS----------MEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc----ccc---hhhh----------hhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 567789999999999999996432100 000 0000 111222222 234467889999999999
Q ss_pred EEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEE-cCCCCeEEEEEcCCeEE
Q 001165 155 YSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL-CLPMRLLFVLYSNGQLM 233 (1134)
Q Consensus 155 ~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~f-sp~~~~la~~~sDG~v~ 233 (1134)
.+ |++.....++ .+ .+..|..+|.++++ .++..++|+++-|++|.
T Consensus 98 K~--W~~~~~~~~c----------~s----------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 98 KV--WNAHKDNTFC----------MS----------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred EE--eecccCcchh----------Hh----------------------hhhcccchheeeeecccCceeEEecCCCccEE
Confidence 87 5554332221 11 34578999999999 88889999999999999
Q ss_pred EEEeccCCccccc---eec--ccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEE
Q 001165 234 SCSVSKKGLKLAE---FIK--IDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYT 308 (1134)
Q Consensus 234 l~~~~~~~~~~~~---~~~--~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~ 308 (1134)
+|+++........ ... ...-.....++++|.|+.|..|++|+..+.+++||.. +++.+..
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr---------------t~~kimk 208 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR---------------TCKKIMK 208 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc---------------cccceee
Confidence 9999865321000 000 0000123578899999999999999999999999999 7777778
Q ss_pred eecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---ee
Q 001165 309 FCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 385 (1134)
Q Consensus 309 l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i 385 (1134)
+.| |+.-|.++-.++||+.+.||+.||+|+|||+...+|+.|+.-| ...|+++..+|+- ..+-+|+ .+
T Consensus 209 LrG----HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH-~e~VWaL~~~~sf----~~vYsG~rd~~i 279 (735)
T KOG0308|consen 209 LRG----HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH-KEGVWALQSSPSF----THVYSGGRDGNI 279 (735)
T ss_pred eec----cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec-cCceEEEeeCCCc----ceEEecCCCCcE
Confidence 888 9999999999999999999999999999999999999999888 6679999998765 6777776 44
Q ss_pred EEEeCCCc-eEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCC--ccccccccc---cce
Q 001165 386 MQWDEYGY-RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT--DELKILHLN---LPV 456 (1134)
Q Consensus 386 ~~W~~~~~-~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~--~~~~w~~~~---~~~ 456 (1134)
+.=++.++ ++..+++. +.++..+.. ...+-.+..|+.|+-|-..... .+.+....+. .+..-+... -|.
T Consensus 280 ~~Tdl~n~~~~tlick~-daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 280 YRTDLRNPAKSTLICKE-DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-ALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred EecccCCchhheEeecC-CCchhhhhhccccCCceeeeccccceecCCcccc-ccccCCCCCcccccCCCccccccCCCc
Confidence 44455442 22233221 122211111 1222456678888888642211 1111111000 000001111 121
Q ss_pred eeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 457 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 457 ~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
.-..-..+|...++=.|.+++.+-...|.+ +||+...
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 111112245556666699999999999999 9999765
No 110
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=2.9e-16 Score=166.01 Aligned_cols=240 Identities=13% Similarity=0.240 Sum_probs=167.2
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC--EE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS--AF 332 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~--~L 332 (1134)
|.+.++|+|+ +++++|+|+.|-+|+|||+. +...+..+-. |.|.|+++.|+|+-. .|
T Consensus 42 H~~sitavAV--s~~~~aSGssDetI~IYDm~---------------k~~qlg~ll~----HagsitaL~F~~~~S~shL 100 (362)
T KOG0294|consen 42 HAGSITALAV--SGPYVASGSSDETIHIYDMR---------------KRKQLGILLS----HAGSITALKFYPPLSKSHL 100 (362)
T ss_pred cccceeEEEe--cceeEeccCCCCcEEEEecc---------------chhhhcceec----cccceEEEEecCCcchhhe
Confidence 4578899987 46789999999999999998 4444444444 999999999999876 99
Q ss_pred EEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecC
Q 001165 333 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFG 412 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~ 412 (1134)
.+|++||.|.+|++..-.++.+++.| ...|+.++.+|.+
T Consensus 101 lS~sdDG~i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~---------------------------------------- 139 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG---------------------------------------- 139 (362)
T ss_pred eeecCCCcEEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------
Confidence 99999999999999998999999988 4557777777765
Q ss_pred CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccC
Q 001165 413 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 492 (1134)
Q Consensus 413 k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~s 492 (1134)
|..+|.+.|+.+++|++..|..... .-+.+... .+.|+|.|.+++++++++.-+|.+.+
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v-------------------~~L~~~at--~v~w~~~Gd~F~v~~~~~i~i~q~d~ 198 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFV-------------------LNLKNKAT--LVSWSPQGDHFVVSGRNKIDIYQLDN 198 (362)
T ss_pred ceEEEEcCCceeeeehhhcCcccee-------------------eccCCcce--eeEEcCCCCEEEEEeccEEEEEeccc
Confidence 3446778888899999877665210 11122222 38999999999999999966999877
Q ss_pred CcEEEeCCccceeeeEEEEEEee-CCEEEEEEEecCCCeeEEEEEeCCC-CCCc-ceeEEEecCCccEEEEecCCEEEEE
Q 001165 493 KKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYH-LDQS-SLLCRKSLLAKPIVMDVYEDYILVT 569 (1134)
Q Consensus 493 g~Wk~F~~~~~e~~~~v~gl~W~-~~~lv~~~~~~~~~~~eLrly~~~~-ld~~-~~~~~~~l~~~~~~l~~~~d~llv~ 569 (1134)
. +.|.....+ ..+....|. +..+++| ..+..+++++.+. .--. ...+.-.+..-....++++.+|+.+
T Consensus 199 A--~v~~~i~~~--~r~l~~~~l~~~~L~vG-----~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 199 A--SVFREIENP--KRILCATFLDGSELLVG-----GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred H--hHhhhhhcc--ccceeeeecCCceEEEe-----cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEe
Confidence 6 344433222 223445554 5667776 3346788887752 1111 1122222222111223344456669
Q ss_pred EcCCeEEEEEEEEeccc
Q 001165 570 YRPFDVHIFHVKLFGEL 586 (1134)
Q Consensus 570 ~~d~~i~l~~~~~~~~~ 586 (1134)
.+||.|++|++.++.+.
T Consensus 270 SSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 270 SSDGFIKVWDIDMETKK 286 (362)
T ss_pred ccCceEEEEEccccccC
Confidence 99999999999986554
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=1e-15 Score=161.07 Aligned_cols=271 Identities=16% Similarity=0.149 Sum_probs=176.8
Q ss_pred CCcccEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 206 PISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
+....|.+++|||. .++++.++=||+|++|++...+........ .+.+++.|++|+.||..+++|+.|+++++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~----~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ----SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh----ccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 34567899999995 456667888999999999753221111111 1357899999999999999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC--EEEEEECCCcEEEEecCCCeeEEEeccCCCCc
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~--~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
+. +++. .++.. |.++|.++.|-+... +|++|+.|++++.||+....++.++.-. ..
T Consensus 101 L~---------------S~Q~-~~v~~----Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eR 158 (347)
T KOG0647|consen 101 LA---------------SGQV-SQVAA----HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ER 158 (347)
T ss_pred cc---------------CCCe-eeeee----cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ce
Confidence 99 5543 23333 999999999988776 9999999999999999988888877542 23
Q ss_pred eeeeEEcCCCCCCcceE--EEcc-eeEEEeCCCceEEEEe-c---CCCcc-EEEEecCCEEEeeecCCcEEeeeeeeCC-
Q 001165 363 ISSPIVKPNQDCKYEPL--MSGT-SMMQWDEYGYRLYAIE-E---GSSER-VLIFSFGKCCLNRGVSGMTYARQVIYGE- 433 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l--~sgs-~i~~W~~~~~~l~~~~-~---~h~~~-v~~~s~~k~l~S~s~d~ti~~w~l~~~~- 433 (1134)
|.+... .+..+ +++. .+.+++++++...... . ..+-+ |.+|.-.+..+-|+..|.+-+..+..+.
T Consensus 159 vYa~Dv------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 159 VYAADV------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred eeehhc------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 444322 12232 2333 7888888664322111 0 01111 2222224444677888887776655432
Q ss_pred -CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEE
Q 001165 434 -DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKG 511 (1134)
Q Consensus 434 -~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~g 511 (1134)
+...+-+. .-+-+ ..+.-.+|++++|.|.-..|+++|.||+. .||-..+ -|++..+.+.+.+.|..
T Consensus 233 ~~nFtFkCH---------R~~~~--~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 233 KDNFTFKCH---------RSTNS--VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCS 300 (347)
T ss_pred cCceeEEEe---------ccCCC--CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeE
Confidence 11111110 00000 00112368999999999999999999999 9997664 35666566666666666
Q ss_pred EEeeCCEEE
Q 001165 512 LLWLGKIIV 520 (1134)
Q Consensus 512 l~W~~~~lv 520 (1134)
+--.|.+++
T Consensus 301 fn~~G~ifa 309 (347)
T KOG0647|consen 301 FNRNGSIFA 309 (347)
T ss_pred ecCCCCEEE
Confidence 555555543
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.4e-16 Score=161.34 Aligned_cols=258 Identities=19% Similarity=0.152 Sum_probs=185.6
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeEE
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVVE 281 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V~ 281 (1134)
+.|...|.++..+-.|..+|++++||.|+++....... .....+. .|.+++..++|.+ -|.+||+++.||.|.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~----Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT----GHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec----CCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 46777888888888999999999999999998865443 2111221 2568899999877 789999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC--EEEEEECCCcEEEEecCCC--eeEEEecc
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC--RLMSTIRQ 357 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~--~Lasg~~Dg~I~vWdv~~~--~l~~tl~~ 357 (1134)
||.-.+.. - +..+. ...|.+.|++|+|-|.++ .||+|+.||.|+|.+..+. -....+..
T Consensus 84 iWke~~g~-w------------~k~~e----~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 84 IWKEENGR-W------------TKAYE----HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred EEecCCCc-h------------hhhhh----hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 99987321 0 01111 124999999999999755 8999999999999988543 23333444
Q ss_pred CCCCceeeeEEcCCCC----------CCcceEEEcc---eeEEEeCCCce--EEEEecCCCccE--EEEec-----CCEE
Q 001165 358 ISLSSISSPIVKPNQD----------CKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERV--LIFSF-----GKCC 415 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~----------~~~~~l~sgs---~i~~W~~~~~~--l~~~~~~h~~~v--~~~s~-----~k~l 415 (1134)
.|.-.|+++.+.|... .+...++||+ .+++|....++ +-..+.+|.+-| ++..| -..+
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 4477899999988731 1123478877 89999987753 233467888777 44444 3478
Q ss_pred EeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc-CC
Q 001165 416 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QK 493 (1134)
Q Consensus 416 ~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~-sg 493 (1134)
+|+|.||++.+|....... .|+ ...+.....++..++||+.|+.||+++.|..+ +|--+ .|
T Consensus 227 AS~SqDg~viIwt~~~e~e-------------~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYE-------------PWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred EEecCCCcEEEEEecCccC-------------ccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 9999999999998542111 121 11122345679999999999999999999999 99754 56
Q ss_pred cEEEeCC
Q 001165 494 KWRVFGD 500 (1134)
Q Consensus 494 ~Wk~F~~ 500 (1134)
+|+..+.
T Consensus 290 kw~~v~~ 296 (299)
T KOG1332|consen 290 KWEEVGE 296 (299)
T ss_pred cEEEccc
Confidence 8886543
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=6.2e-16 Score=177.92 Aligned_cols=230 Identities=16% Similarity=0.208 Sum_probs=179.1
Q ss_pred cCCCcccEEE-EEEcC-CCCeEEEEEcCCeEEEEEeccCCccc-cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 204 KFPISSAIIW-LELCL-PMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 204 ~~~~~~~V~~-i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
..++.+-|.. +.|.+ +...+++++.|+.+.+|..+...+.. ..+ |...+.|++...++. +++|+.|.|+
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-------H~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-------HKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc-------cccceeeeecCCcCc-eEecccccce
Confidence 3455566665 77875 44568999999999998887655432 222 347788999888887 9999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
++|... ++...+.+ |+.+|.+++.-|++ .++||+.|.+|++|. +++++.++.+| +
T Consensus 125 kvW~~~-----------------~l~~~l~g----H~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gH-t 179 (745)
T KOG0301|consen 125 KVWRIG-----------------ELVYSLQG----HTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGH-T 179 (745)
T ss_pred EEecch-----------------hhhcccCC----cchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccc-h
Confidence 999876 33344555 99999999999998 888999999999996 47889999997 8
Q ss_pred CceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCC
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 434 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~ 434 (1134)
+-|.++++-+++ .++|++ .++.|+. +++++....||++-++.++. ...++|.+.|+++++|... +.
T Consensus 180 D~VRgL~vl~~~-----~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~ 251 (745)
T KOG0301|consen 180 DCVRGLAVLDDS-----HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--EC 251 (745)
T ss_pred hheeeeEEecCC-----CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ce
Confidence 899999998885 456655 8999999 45666777899999988773 7789999999999999843 11
Q ss_pred eEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE
Q 001165 435 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 435 ~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W 495 (1134)
-+.+++|. -.|+++.+=++|. +++||.||.+ +|.....||
T Consensus 252 --------------~q~I~lPt------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 252 --------------VQVITLPT------TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred --------------EEEEecCc------cceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 11222333 2578888888886 5789999999 999876665
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=180.14 Aligned_cols=262 Identities=15% Similarity=0.185 Sum_probs=184.5
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
.-|++.|+|..+.+++ ++.|++|+..... ..++++...|. .....+-++..+++++.+++|.+|....+..
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~-~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGE-LVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCc-eeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 3478999999887765 7799999996321 22344443343 2344566778999999999999999976432
Q ss_pred c-eecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 102 S-IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 102 ~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
. +.. . ...+ ..+.++..+|+.++.|+.|-.|.++.-++.....
T Consensus 89 ~~iL~-----------R------ftlp-----~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~-------------- 132 (933)
T KOG1274|consen 89 DTILA-----------R------FTLP-----IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK-------------- 132 (933)
T ss_pred cceee-----------e------eecc-----ceEEEEecCCcEEEeecCceeEEEEeccccchhe--------------
Confidence 1 111 0 0011 2356777788899999888888887665543221
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc-ccceecccc-cCCCCC
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDK-ELGSGD 258 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~-~~~~~~~~~-~~~~~~ 258 (1134)
.+.+|+++|.++.|+|.++++|+.+-||.+++|++..+... ...++.... .....-
T Consensus 133 ----------------------~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i 190 (933)
T KOG1274|consen 133 ----------------------VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI 190 (933)
T ss_pred ----------------------eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence 35689999999999999999999999999999999765432 112221100 001233
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
++-++|+|++..+|+-+.|++|++|+.. +.+..+.+.+ ..|...+.+++|||+|+|||+++.|
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~---------------~we~~f~Lr~--~~~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRK---------------GWELQFKLRD--KLSSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccC---------------Cceeheeecc--cccccceEEEEEcCCCcEEeeeccC
Confidence 4568999999999999999999999998 4455555432 1133449999999999999999999
Q ss_pred CcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 339 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
|.|.|||+.+... +.. ...|.+.+|.|+.
T Consensus 254 g~I~vWnv~t~~~----~~~-~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 254 GQILVWNVDTHER----HEF-KRAVCCEAWKPNA 282 (933)
T ss_pred CcEEEEecccchh----ccc-cceeEEEecCCCC
Confidence 9999999987211 111 3568888888876
No 115
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-15 Score=167.53 Aligned_cols=229 Identities=15% Similarity=0.178 Sum_probs=155.5
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCe-E
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH-M 145 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~-l 145 (1134)
+|.+++|.|-|-...|.+++-||+++||.++....+. +.++.+.- .++ ...+|+++|.. +
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----------lqS~~l~~---fPi-----~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----------LQSIHLEK---FPI-----QKAEFAPNGHSVI 273 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----------heeeeecc---Ccc-----ceeeecCCCceEE
Confidence 6789999999999999999999999999998653221 12222221 111 24578888874 4
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCC-CcccEEEEEEcCCCCeEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP-ISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~-~~~~V~~i~fsp~~~~la 224 (1134)
++++.... .++||-++..-.. +. ...+ ....+...+.||++++++
T Consensus 274 ~~s~rrky--~ysyDle~ak~~k----------~~----------------------~~~g~e~~~~e~FeVShd~~fia 319 (514)
T KOG2055|consen 274 FTSGRRKY--LYSYDLETAKVTK----------LK----------------------PPYGVEEKSMERFEVSHDSNFIA 319 (514)
T ss_pred EecccceE--EEEeecccccccc----------cc----------------------CCCCcccchhheeEecCCCCeEE
Confidence 44433333 4567765422111 10 0111 234456677899999999
Q ss_pred EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcce
Q 001165 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMRE 304 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~ 304 (1134)
+.+..|.|.++......... .+. -.+.+..++|+.|++.|.+.+.+|.|.+||+. ...
T Consensus 320 ~~G~~G~I~lLhakT~eli~--s~K-----ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~---------------~~~ 377 (514)
T KOG2055|consen 320 IAGNNGHIHLLHAKTKELIT--SFK-----IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR---------------QNS 377 (514)
T ss_pred EcccCceEEeehhhhhhhhh--eee-----eccEEeeEEEecCCcEEEEEcCCceEEEEecC---------------Ccc
Confidence 99999999997664332211 111 12667889999999999999999999999999 556
Q ss_pred EEEEeecccCCCCcCe--EEEEECCCCCEEEEEECCCcEEEEecCC------CeeEEEeccCCCCceeeeEEcCCCCCCc
Q 001165 305 VYYTFCRYSMDDTGPV--SCIAWTPDNSAFAVGWKSRGLTVWSVSG------CRLMSTIRQISLSSISSPIVKPNQDCKY 376 (1134)
Q Consensus 305 ~l~~l~~~~~~h~g~V--~~l~fSPDG~~Lasg~~Dg~I~vWdv~~------~~l~~tl~~h~~~~V~sv~~sp~~~~~~ 376 (1134)
+++.+.. .|.| ++++-|++|.+||+|++.|-|-|+|..+ .+++.++..- ...|++++|+|+.
T Consensus 378 ~~~rf~D-----~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~---- 447 (514)
T KOG2055|consen 378 CLHRFVD-----DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDA---- 447 (514)
T ss_pred eEEEEee-----cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcch----
Confidence 6666543 4444 6678889999999999999999999754 2344444333 3467888888887
Q ss_pred ceEE
Q 001165 377 EPLM 380 (1134)
Q Consensus 377 ~~l~ 380 (1134)
+.++
T Consensus 448 qiLA 451 (514)
T KOG2055|consen 448 QILA 451 (514)
T ss_pred hhhh
Confidence 6555
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=1e-15 Score=161.12 Aligned_cols=268 Identities=14% Similarity=0.202 Sum_probs=177.0
Q ss_pred eeEEEeec-CeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecC
Q 001165 23 QIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 23 ~iv~fS~d-g~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
..++|||. ..++++++ |++||+|++...+...++ ....+.|++.+++||-||+.+++++.|+.+++||+..+
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-----a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-----AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccch-----hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 45999994 55665555 899999999743343332 22335789999999999999999999999999999875
Q ss_pred cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeC---C-CeEEEEecCCcEEEEecCCccccceeccccCCCc
Q 001165 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD---N-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1134)
Q Consensus 101 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d---~-~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~ 176 (1134)
+...... ++++|.++..- + .-|+.|+-|.++.. ||.......
T Consensus 105 Q~~~v~~-----------------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf--WD~R~~~pv--------- 150 (347)
T KOG0647|consen 105 QVSQVAA-----------------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKF--WDTRSSNPV--------- 150 (347)
T ss_pred Ceeeeee-----------------------cccceeEEEEecCCCcceeEecccccceee--cccCCCCee---------
Confidence 2222222 23333333222 1 34678888999986 564321111
Q ss_pred cccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCC
Q 001165 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGS 256 (1134)
Q Consensus 177 ~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~ 256 (1134)
. ...-...+++++ --..++++++.+..+.++++.........-..+.+
T Consensus 151 ---~-----------------------t~~LPeRvYa~D--v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk---- 198 (347)
T KOG0647|consen 151 ---A-----------------------TLQLPERVYAAD--VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK---- 198 (347)
T ss_pred ---e-----------------------eeeccceeeehh--ccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc----
Confidence 0 000112233321 12346888899999999988543322111112222
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc-----cCCCCcCeEEEEECCCCCE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY-----SMDDTGPVSCIAWTPDNSA 331 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~-----~~~h~g~V~~l~fSPDG~~ 331 (1134)
-.+.||+..+|.+..|.|+-.|.+.+..+++... +...+++-. ..+.--+|++|+|.|.-..
T Consensus 199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT 265 (347)
T ss_pred ceeeEEEEEecCCceEeeeecceEEEEecCCCCc-------------cCceeEEEeccCCCCCCceEEecceEeecccce
Confidence 3467999999999899999999999999985321 111222210 0001236899999998889
Q ss_pred EEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEE
Q 001165 332 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 332 Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
|++++.||+...||-..+.-+.+.+.| ..+|++..|+.+| ..++
T Consensus 266 lvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G----~ifa 309 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNG----SIFA 309 (347)
T ss_pred EEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCC----CEEE
Confidence 999999999999999877666666666 6789999999988 5555
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=8.7e-16 Score=169.73 Aligned_cols=276 Identities=14% Similarity=0.169 Sum_probs=189.7
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeee----eeccCcceEEEEeecccCCCCcCeEEEEECCCCC
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS----LYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS 330 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~----l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~ 330 (1134)
|.-.++|++++|+.+...+++.||+|.=|++.........+. +.. .+...+.- . ..|.+.|.+++.||||+
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~--~~~~~k~~--r-~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS--HGNPLKES--R-KGHVKEILTLAVSSDGK 215 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh--ccCCCCcc--c-ccccceeEEEEEcCCCc
Confidence 456789999999999999999999999999873221100000 000 01111110 0 14889999999999999
Q ss_pred EEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEE
Q 001165 331 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL 407 (1134)
Q Consensus 331 ~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~ 407 (1134)
+||+|+.|+.|.||+..+...+.++.+| .+.|.+++|-... ..+.+++ ++++|+++....+-++-||++.|.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGT----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred EEEecCCCceEEEecCcccchhhccccc-ccceeeeeeecCc----cceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 9999999999999999999999999988 7899999997654 3444444 999999988777777889999998
Q ss_pred EEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 408 IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 408 ~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
.++. .+.+..|+.|+|+++|.+ .++. ...|.+|...+-|++|= |..++++|+.+|
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi--~ees-------------------qlifrg~~~sidcv~~I-n~~HfvsGSdnG 348 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKI--PEES-------------------QLIFRGGEGSIDCVAFI-NDEHFVSGSDNG 348 (479)
T ss_pred eechhcccceEEeccccceeEEEec--cccc-------------------eeeeeCCCCCeeeEEEe-cccceeeccCCc
Confidence 7776 555555669999999998 2332 23466778889999996 556889999999
Q ss_pred eE-EEEccCCcEEEeC--Cccc---e-----eeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCC-CCCCcceeEEE
Q 001165 485 LI-LYDIRQKKWRVFG--DITQ---E-----QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRK 550 (1134)
Q Consensus 485 ~i-lwd~~sg~Wk~F~--~~~~---e-----~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~-~ld~~~~~~~~ 550 (1134)
.| +|++..++ .+|. +..+ + +.+-++++.-. .+.++.+ +.+..+|+|-.+ ++..-+++...
T Consensus 349 ~IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-----S~~G~vrLW~i~~g~r~i~~l~~l 422 (479)
T KOG0299|consen 349 SIALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-----SWSGCVRLWKIEDGLRAINLLYSL 422 (479)
T ss_pred eEEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEec-----CCCCceEEEEecCCccccceeeec
Confidence 99 99998765 2332 1111 1 11123332222 2233333 567899999886 55544556665
Q ss_pred ecCCcc--EEEEecCCEEEE
Q 001165 551 SLLAKP--IVMDVYEDYILV 568 (1134)
Q Consensus 551 ~l~~~~--~~l~~~~d~llv 568 (1134)
++.+=+ +.++..+..+++
T Consensus 423 s~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 423 SLVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred ccccEEEEEEEccCCCEEEE
Confidence 554422 223334444544
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=4e-16 Score=172.73 Aligned_cols=269 Identities=13% Similarity=0.151 Sum_probs=190.9
Q ss_pred cCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccc--eeccc-cc-CCCCCeEEEEECCCCC-EEEEeeeC
Q 001165 204 KFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAE--FIKID-KE-LGSGDAVCASIAPEQQ-ILAVGTRR 277 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~va~spdg~-llAsG~~d 277 (1134)
...|.+.|+.+-|-|+. +.+|+.+..|.+++|+..+....... ...+. .. .|....+.++||+... .+++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 45688899999999986 56777888999999999765433211 11110 11 1233478899999644 68899999
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecC--CCeeEEE
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS--GCRLMST 354 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~--~~~l~~t 354 (1134)
++|++||+.......+.+. +...+. +|...|..++|+| +...++++++|+.+.|||+. ..++.++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~--------p~~~~~----~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVD--------PKTIFS----GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred CcEEEEeccccccCCcccc--------ceEEee----cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence 9999999984432111111 112233 4999999999999 66689999999999999998 4455555
Q ss_pred eccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC-ceEEEEecCCCccE--EEEec--CCEEEeeecCCcEEe
Q 001165 355 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYA 426 (1134)
Q Consensus 355 l~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~-~~l~~~~~~h~~~v--~~~s~--~k~l~S~s~d~ti~~ 426 (1134)
...| .++|++++|+|-++ ..|++|+ ++.+||+++ .+.+..+.+|.+.| +.++| -..++|.+.|+.+.+
T Consensus 268 ~~ah-~~~vn~~~fnp~~~---~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 268 VKAH-SAEVNCVAFNPFNE---FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred cccc-CCceeEEEeCCCCC---ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 6666 88999999999873 5678887 999999976 45677788999999 45566 567889999999999
Q ss_pred eeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCC-EEEEEeCCCeE-EEEccCCc
Q 001165 427 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 427 w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~-~LAsgg~dG~i-lwd~~sg~ 494 (1134)
||+.+-+....--.+.+. +..+.-.--||...|...+++|+.. .+++++.|+.+ +|.+....
T Consensus 344 WDls~ig~eq~~eda~dg------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDG------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred EeccccccccChhhhccC------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 998654332100000000 0001122348999999999999765 56788999999 99987543
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.70 E-value=8.3e-16 Score=176.92 Aligned_cols=266 Identities=14% Similarity=0.131 Sum_probs=198.1
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEE-EEECC-CCCEEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAP-EQQILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-va~sp-dg~llAsG~~dg~V 280 (1134)
.+.+|+..|..++..+.. .++.++.||++.+|.-....-....... .+.+-+.+ +++-+ ++-.+.+|+.|++|
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~----~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE----GPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc----cCcceeeccceeccccCcceEeecccceE
Confidence 456788888887765544 6788889999999986432211111111 01122222 55554 44569999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
.+|..+ ..+++.+++| |...|.|++--.++. ++|||.|.+++||-.. ++..++.+| .
T Consensus 84 ~v~~~~---------------~~~P~~~Lkg----H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~ 140 (745)
T KOG0301|consen 84 IVFKLS---------------QAEPLYTLKG----HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-T 140 (745)
T ss_pred EEEecC---------------CCCchhhhhc----cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-c
Confidence 999999 7889999998 999999999888988 9999999999999763 566678888 8
Q ss_pred CceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
+.|++++.-|.+ .++||+ ++++|.. ++++.++.||.+-|-.+.. ...++|++.||.|+.|++ .|+.
T Consensus 141 asVWAv~~l~e~-----~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~- 211 (745)
T KOG0301|consen 141 ASVWAVASLPEN-----TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV- 211 (745)
T ss_pred hheeeeeecCCC-----cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce-
Confidence 899999998885 566776 9999985 7888999999998844443 668899999999999997 3443
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeE-----E
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-----S 509 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~-----v 509 (1134)
...+.+|..-|.+++..++++.++++|+|+++ +|+... ..+.+. |
T Consensus 212 -------------------l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e----------~~q~I~lPttsi 262 (745)
T KOG0301|consen 212 -------------------LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE----------CVQVITLPTTSI 262 (745)
T ss_pred -------------------eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc----------eEEEEecCccce
Confidence 45788999999999998999999999999999 998651 122222 2
Q ss_pred EE-EEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 510 KG-LLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 510 ~g-l~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
-. -+|.++-+++|| ++.-+|+|..+
T Consensus 263 Wsa~~L~NgDIvvg~-----SDG~VrVfT~~ 288 (745)
T KOG0301|consen 263 WSAKVLLNGDIVVGG-----SDGRVRVFTVD 288 (745)
T ss_pred EEEEEeeCCCEEEec-----cCceEEEEEec
Confidence 11 234355555553 44678998774
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=2.3e-16 Score=169.20 Aligned_cols=247 Identities=17% Similarity=0.182 Sum_probs=183.4
Q ss_pred CCCeEEEEECCCC-CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 256 SGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 256 ~~~~~~va~spdg-~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
.+.+.|+|=+|.. ..+|+|+.||.|++||+. ..++++++.. |.|.|+.|+++. ..+++
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnls---------------qR~~~~~f~A----H~G~V~Gi~v~~--~~~~t 124 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS---------------QRECIRTFKA----HEGLVRGICVTQ--TSFFT 124 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehh---------------hhhhhheeec----ccCceeeEEecc--cceEE
Confidence 4678899999987 789999999999999999 7888888887 999999999987 77889
Q ss_pred EECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEecCCCccE--EEEec
Q 001165 335 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERV--LIFSF 411 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~~~h~~~v--~~~s~ 411 (1134)
+++|++|+.|.+.+. ..+++.+ .+.+..+.-+..+ ..++|++ .+-+||.+-...+....-..+.| +.|+|
T Consensus 125 vgdDKtvK~wk~~~~-p~~tilg--~s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGP-PLHTILG--KSVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred ecCCcceeeeeccCC-cceeeec--ccccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCC
Confidence 999999999999874 6667654 4455555544444 6677777 88999987666555554445555 55566
Q ss_pred --CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccc---------------------ccccc-eeeccCCCceEE
Q 001165 412 --GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL---------------------HLNLP-VSYISQNWPVQH 467 (1134)
Q Consensus 412 --~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~---------------------~~~~~-~~~~~h~~~V~~ 467 (1134)
...+++++.|+++.++|+.++..---++.+--+..+.|. .++-| ..+.+|...|..
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~d 277 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMD 277 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEE
Confidence 446778889999999998877654333333222223331 12223 467899999999
Q ss_pred EEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeE-EEEEEee--CCEEEEEEEecCCCeeEEEEEeC
Q 001165 468 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 468 va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~-v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
++|||.|+-+++||-|.+| +|.++.+.-+ +..+.+-|. |.++.|. ..+++.| +++..+|+|..
T Consensus 278 VdfsptG~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka 344 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKA 344 (433)
T ss_pred eccCCCcchhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeec
Confidence 9999999999999999999 9999877422 333444444 7788886 4467766 56678999965
No 121
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=2e-16 Score=169.66 Aligned_cols=275 Identities=15% Similarity=0.121 Sum_probs=184.1
Q ss_pred cceeEEEEcCCc-eEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEE
Q 001165 68 GENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 68 G~~~~v~wSPDg-~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ll 146 (1134)
+.+.+++=-|.. ..+|+|+.||.|+|||+....... .+..+.+.|..+..+.+.++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-----------------------~f~AH~G~V~Gi~v~~~~~~ 123 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-----------------------TFKAHEGLVRGICVTQTSFF 123 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-----------------------eeecccCceeeEEecccceE
Confidence 456677777766 679999999999999996532111 12334456767766778888
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~ 226 (1134)
.++.|.+|..|..++.... ....++.+..|+.+..++.|+++
T Consensus 124 tvgdDKtvK~wk~~~~p~~--------------------------------------tilg~s~~~gIdh~~~~~~FaTc 165 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPPLH--------------------------------------TILGKSVYLGIDHHRKNSVFATC 165 (433)
T ss_pred EecCCcceeeeeccCCcce--------------------------------------eeecccccccccccccccccccc
Confidence 8888999998766653111 11223445566666667777776
Q ss_pred EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceE
Q 001165 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREV 305 (1134)
Q Consensus 227 ~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~ 305 (1134)
+ -.+.+|+.....|.+. ..| +...+.|+.|||-.. +||+|..|+.|.|||+. .+++
T Consensus 166 G--e~i~IWD~~R~~Pv~s-----msw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R---------------~~~P 222 (433)
T KOG0268|consen 166 G--EQIDIWDEQRDNPVSS-----MSW-GADSISSVKFNPVETSILASCASDRSIVLYDLR---------------QASP 222 (433)
T ss_pred C--ceeeecccccCCccce-----eec-CCCceeEEecCCCcchheeeeccCCceEEEecc---------------cCCc
Confidence 4 3578998865544321 123 347789999999654 68888899999999998 3333
Q ss_pred EEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC-CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcce
Q 001165 306 YYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS 384 (1134)
Q Consensus 306 l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~ 384 (1134)
++.+. -+-.-+.|+|+|.+-.+.+|++|..+..+|+.. .+.+....+| .+.|.++.|||.
T Consensus 223 l~KVi-----~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfspt------------- 283 (433)
T KOG0268|consen 223 LKKVI-----LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPT------------- 283 (433)
T ss_pred cceee-----eeccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCC-------------
Confidence 33221 122346799999999999999999999999854 2223333333 334444444444
Q ss_pred eEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeec-cCCC
Q 001165 385 MMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNW 463 (1134)
Q Consensus 385 i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~-~h~~ 463 (1134)
|+.++|||.|.+|+++....+..+ ..|. .--.
T Consensus 284 ---------------------------G~EfvsgsyDksIRIf~~~~~~SR--------------------diYhtkRMq 316 (433)
T KOG0268|consen 284 ---------------------------GQEFVSGSYDKSIRIFPVNHGHSR--------------------DIYHTKRMQ 316 (433)
T ss_pred ---------------------------cchhccccccceEEEeecCCCcch--------------------hhhhHhhhh
Confidence 555677788888888776554432 1110 0112
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 464 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 464 ~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
.|.++.+|-|.+|+.+|++||.+ +|....
T Consensus 317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 317 HVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eeeEEEEeccccEEEecCCCcceeeeecch
Confidence 48899999999999999999999 997643
No 122
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.69 E-value=8e-16 Score=157.60 Aligned_cols=277 Identities=12% Similarity=0.139 Sum_probs=197.2
Q ss_pred hcceeEEEEcC---CceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCC
Q 001165 67 EGENLQAVWSP---DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (1134)
Q Consensus 67 ~G~~~~v~wSP---Dg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~ 143 (1134)
..+++.++||| ||-.|++++.||.-.+-+=+++ . |.- .+.++.+.|.+-..+.+
T Consensus 14 trpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-----------d--------wig----tfeghkgavw~~~l~~n 70 (334)
T KOG0278|consen 14 TRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-----------D--------WIG----TFEGHKGAVWSATLNKN 70 (334)
T ss_pred CcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-----------C--------cEE----eeeccCcceeeeecCch
Confidence 34788999975 8888999998874322222111 0 000 13344455655555555
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
-+..++....+..-.||.-+...+ ....|+--|.+++|+.|.+.+
T Consensus 71 a~~aasaaadftakvw~a~tgdel-----------------------------------hsf~hkhivk~~af~~ds~~l 115 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDEL-----------------------------------HSFEHKHIVKAVAFSQDSNYL 115 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhh-----------------------------------hhhhhhheeeeEEecccchhh
Confidence 444444433333334665433221 223567778999999999999
Q ss_pred EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 224 a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
++++.+.-+++++.+...... ..+. .+.+.|..+-|....+.|.+...|++||+||.. ++
T Consensus 116 ltgg~ekllrvfdln~p~App-~E~~----ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r---------------Tg 175 (334)
T KOG0278|consen 116 LTGGQEKLLRVFDLNRPKAPP-KEIS----GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR---------------TG 175 (334)
T ss_pred hccchHHHhhhhhccCCCCCc-hhhc----CCCCcceeEEEeccCceEEeeccCCceEEEEec---------------cC
Confidence 999888888887776433211 1111 234677888898888899998999999999999 77
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
+...++. -..+|+++..|+||++|..+.. ++|+.||..+-.++...+- ...|.+...+|+. +.++.|+
T Consensus 176 t~v~sL~-----~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k~--P~nV~SASL~P~k----~~fVaGg 243 (334)
T KOG0278|consen 176 TEVQSLE-----FNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYKM--PCNVESASLHPKK----EFFVAGG 243 (334)
T ss_pred cEEEEEe-----cCCCCcceeeccCCCEEEEecC-ceeEEeccccccceeeccC--ccccccccccCCC----ceEEecC
Confidence 7777664 3678999999999999988765 7999999988777777655 3468888899987 7888877
Q ss_pred ---eeEEEeCCCceEEEEe-cCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCC
Q 001165 384 ---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 384 ---~i~~W~~~~~~l~~~~-~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
.+..+|..+++-+... ++|.++| +.|+| |...++||.||++++|....++
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 7778899888777764 8999999 66777 9999999999999999965444
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.69 E-value=1.4e-15 Score=168.38 Aligned_cols=235 Identities=17% Similarity=0.185 Sum_probs=176.8
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
...+.+|.++...|+|+.+++++.-.++.+|++....+........ ..-.+..+++|||.++..+++.||.|+|||
T Consensus 462 l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelts----sapaCyALa~spDakvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 462 LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS----SAPACYALAISPDAKVCFSCCSDGNIAVWD 537 (705)
T ss_pred cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCC----cchhhhhhhcCCccceeeeeccCCcEEEEE
Confidence 3467889999999999999999998899999986544322111110 012345689999999999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
+. ...++++|+| |+..+.||..|+||..|=+|+-|++||.||+..++.+.... . .+.|.
T Consensus 538 Lh---------------nq~~VrqfqG----htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F-~SQIf 596 (705)
T KOG0639|consen 538 LH---------------NQTLVRQFQG----HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-F-SSQIF 596 (705)
T ss_pred cc---------------cceeeecccC----CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-h-hhhhe
Confidence 99 6677888888 99999999999999999999999999999998765432221 1 45688
Q ss_pred eeEEcCCCCCCcceEEEcc-eeEEE--eCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 365 SPIVKPNQDCKYEPLMSGT-SMMQW--DEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs-~i~~W--~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
++..+|++ +.++-|- ...+| ...+.+-++. .-|.+-|+.+.| |+..+|.+.|+....|..-+|..-
T Consensus 597 SLg~cP~~----dWlavGMens~vevlh~skp~kyql-hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi--- 668 (705)
T KOG0639|consen 597 SLGYCPTG----DWLAVGMENSNVEVLHTSKPEKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--- 668 (705)
T ss_pred ecccCCCc----cceeeecccCcEEEEecCCccceee-cccccEEEEEEecccCceeeecCchhhhhhccCccccce---
Confidence 88889988 7777554 33333 2233222222 245666755444 999999999999999987666541
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
.. ...+.+|.++.+|.|.+|+++|+.|..+ +|.+
T Consensus 669 -----------------Fq-skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 -----------------FQ-SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----------------ee-ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 01 1234679999999999999999999888 8876
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.3e-15 Score=160.18 Aligned_cols=217 Identities=10% Similarity=0.105 Sum_probs=167.7
Q ss_pred eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccC
Q 001165 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~ 301 (1134)
.+++.+.+|++.+ .+.. ...++ .+.+..++.......+++++.|.+.+||.++
T Consensus 126 rivssFk~~t~~~-~lvr----e~~GH-------kDGiW~Vaa~~tqpi~gtASADhTA~iWs~E--------------- 178 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF-RLVR----ELEGH-------KDGIWHVAADSTQPICGTASADHTARIWSLE--------------- 178 (481)
T ss_pred hheeeecCCceeE-eehh----hhccc-------ccceeeehhhcCCcceeecccccceeEEeec---------------
Confidence 4566778887543 2211 11122 2455566666667789999999999999999
Q ss_pred cceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEe------cCC---------------------------
Q 001165 302 MREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS------VSG--------------------------- 348 (1134)
Q Consensus 302 ~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWd------v~~--------------------------- 348 (1134)
+|.++.+..| |.|.|++|+|+|.|.++++|+.|++..||. +..
T Consensus 179 sg~CL~~Y~G----H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~ 254 (481)
T KOG0300|consen 179 SGACLATYTG----HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSE 254 (481)
T ss_pred cccceeeecc----cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccc
Confidence 8999999888 999999999999999999999999999997 211
Q ss_pred -------CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEE
Q 001165 349 -------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCC 415 (1134)
Q Consensus 349 -------~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l 415 (1134)
..+++.+.+| .+.|.+..|-..+ +.+++++ +..+||+++++++..+.||+..+ ..-.| .+.+
T Consensus 255 ~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg----~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLV 329 (481)
T KOG0300|consen 255 KSDGHTIRVPLMRLTGH-RAVVSACDWLAGG----QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLV 329 (481)
T ss_pred ccCCceeeeeeeeeecc-ccceEehhhhcCc----ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEE
Confidence 0123445555 5666666676666 7778887 88999999999999999999888 34445 7788
Q ss_pred EeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 416 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 416 ~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
++.+.|.+.++||+...-. -...|.||...|+++.|..|. .+++|++|.++ +||+..-+
T Consensus 330 vTsSrDtTFRLWDFReaI~-------------------sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 330 VTSSRDTTFRLWDFREAIQ-------------------SVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred EEeccCceeEeccchhhcc-------------------eeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecccc
Confidence 8999999999999763222 245688999999999998655 57899999999 99997654
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=4.5e-15 Score=155.25 Aligned_cols=228 Identities=14% Similarity=0.183 Sum_probs=166.7
Q ss_pred CCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEE
Q 001165 256 SGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFA 333 (1134)
Q Consensus 256 ~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~La 333 (1134)
.+.+.++.+.| .|+++.+|+.||.|.|||+++.+......-+. ..+++-. +....+|+-.|.++.|-| |--++.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~---k~~c~v~-~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA---KHKCIVA-KQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee---heeeecc-ccCCccceeeeeeeEEeeecCceee
Confidence 35666777776 68999999999999999998654211000000 0001000 002345888999999999 666888
Q ss_pred EEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEe
Q 001165 334 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS 410 (1134)
Q Consensus 334 sg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s 410 (1134)
+++.|.+++|||+.+-+..-.++- ...|.+-+++|-. .++..++.|. .+++-|+.+|..-.++.||.+.|++++
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~m--e~~VYshamSp~a-~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKM--EGKVYSHAMSPMA-MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccccceEEEeecccceeeEEeec--CceeehhhcChhh-hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 999999999999999887777765 3457777777763 3335667665 899999999999999999999996665
Q ss_pred c---C-CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001165 411 F---G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 411 ~---~-k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
+ . =.++||+.||++++||+............+.+ ...++..+-..|++.|..+||+.||+++++.|.|..+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 5 2 26789999999999999876555444333221 0111223456899999999999999999999999999
Q ss_pred -EEEccCCcE
Q 001165 487 -LYDIRQKKW 495 (1134)
Q Consensus 487 -lwd~~sg~W 495 (1134)
+|+..+|+-
T Consensus 271 r~wn~~~G~n 280 (397)
T KOG4283|consen 271 RVWNMESGRN 280 (397)
T ss_pred EEeecccCcc
Confidence 999998864
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=5e-14 Score=158.86 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=170.3
Q ss_pred eEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEE-EEEeCCCEEEEEEEEecCcceecCCCC
Q 001165 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1134)
Q Consensus 32 ~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~L-av~t~dg~l~lw~l~~~~~~~~~~~~~ 109 (1134)
++|++.+ +++|++||.... ..+.... ..+....++|+|||+.+ ++++.++.|++||+..........
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-~~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-EVTRTFP-------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-ceEEEEE-------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---
Confidence 5677765 679999998633 2222221 12335679999999987 556778999999986532100000
Q ss_pred CCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCCC
Q 001165 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (1134)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 188 (1134)
. .......++.++++.++++. .++.+.+|+.. ..... ..
T Consensus 71 ------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~--~~~~~------------~~------- 110 (300)
T TIGR03866 71 ------------------S-GPDPELFALHPNGKILYIANEDDNLVTVIDIE--TRKVL------------AE------- 110 (300)
T ss_pred ------------------C-CCCccEEEECCCCCEEEEEcCCCCeEEEEECC--CCeEE------------eE-------
Confidence 0 00112345677888777665 46777765433 21111 00
Q ss_pred ccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCe-EEEEEeccCCccccceecccccCCCCCeEEEEECCC
Q 001165 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE 267 (1134)
Q Consensus 189 ~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd 267 (1134)
......+.+++|+|+++.++++..++. +..|+....... .... ....+.+++|+|+
T Consensus 111 ----------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~--~~~~-----~~~~~~~~~~s~d 167 (300)
T TIGR03866 111 ----------------IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV--DNVL-----VDQRPRFAEFTAD 167 (300)
T ss_pred ----------------eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE--EEEE-----cCCCccEEEECCC
Confidence 011223467999999999999887764 445555432211 1111 1134568999999
Q ss_pred CCEEEEe-eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc-cCCCCc--CeEEEEECCCCCEEEEE-ECCCcEE
Q 001165 268 QQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY-SMDDTG--PVSCIAWTPDNSAFAVG-WKSRGLT 342 (1134)
Q Consensus 268 g~llAsG-~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~-~~~h~g--~V~~l~fSPDG~~Lasg-~~Dg~I~ 342 (1134)
++.++++ ..+|.|++||++ +++.+.++... ...+.+ ....++|+|||++++++ +.++.+.
T Consensus 168 g~~l~~~~~~~~~v~i~d~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVA---------------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcC---------------cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 9987554 469999999998 44443333210 000111 23568999999986554 4567899
Q ss_pred EEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEec
Q 001165 343 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 343 vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~ 400 (1134)
+||+.+++....+.. ...+.+++|+|++ +.++++. ++++||.++++++...+
T Consensus 233 v~d~~~~~~~~~~~~--~~~~~~~~~~~~g----~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLLV--GQRVWQLAFTPDE----KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEEe--CCCcceEEECCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999988877666543 2368899999998 6666532 89999999988766654
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.8e-17 Score=186.76 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=185.2
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
.|...|.++..-..++.++.++.|..+-+|...+...... . ..|...|-|+.|++...+||.|+.+|+|++||+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--~----~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--L----TGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe--e----eccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 4555566655555567778888888888888866443221 1 124578899999999999999999999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceee
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
. .++.+++|.| |...+.+|.|+|-|.+.|+|+.|+.+++||....-|.++.++| ...|..
T Consensus 100 e---------------eAk~vrtLtg----h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~ 159 (825)
T KOG0267|consen 100 E---------------EAKIVRTLTG----HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDV 159 (825)
T ss_pred h---------------hhhhhhhhhc----cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEE
Confidence 9 7788888888 9999999999999999999999999999999876778888885 788999
Q ss_pred eEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec--CC-EEEeeecCCcEEeeeeeeCCCeEEEe
Q 001165 366 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVV 439 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~--~k-~l~S~s~d~ti~~w~l~~~~~~l~l~ 439 (1134)
++|+|+| ..+++|+ ++++||...|++...+++|.+++..+.+ .+ .+++||.|+++++||+.+-+.
T Consensus 160 l~lsP~G----r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~----- 230 (825)
T KOG0267|consen 160 LRLSPDG----RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV----- 230 (825)
T ss_pred EeecCCC----ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE-----
Confidence 9999999 8888887 8999999999999999999988855444 44 556899999999999753221
Q ss_pred ecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 440 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 440 ~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
..........|++.+|+|+|+.+++|-....
T Consensus 231 ---------------I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 231 ---------------ISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---------------eeccCCccCCceeeeecCCceeeecCchhhh
Confidence 1112223567999999999999998876543
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.6e-15 Score=157.42 Aligned_cols=236 Identities=17% Similarity=0.277 Sum_probs=156.6
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..+.|+.||+.|.++|+||.||.|.+||+. +...-+.+.+ |..+|++++||+||+.|.|++
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~---------------T~~iar~lsa----H~~pi~sl~WS~dgr~LltsS 84 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFD---------------TFRIARMLSA----HVRPITSLCWSRDGRKLLTSS 84 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEcc---------------ccchhhhhhc----cccceeEEEecCCCCEeeeec
Confidence 348899999999999999999999999998 3433344444 999999999999999999999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEecCCCcc-E---EE
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSER-V---LI 408 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~~h~~~-v---~~ 408 (1134)
.|..|++||+..+.++..++- .++|+.+.|+|.... ..+++-- .+...+.....++......+.. . ..
T Consensus 85 ~D~si~lwDl~~gs~l~rirf--~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIRF--DSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred CCceeEEEeccCCCceeEEEc--cCccceeeeccccCC--eEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 999999999998888888776 578999999997632 2233211 3333433222222211111111 1 23
Q ss_pred Eec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCC-CceEEEEEcCCCCEEEEEeCCCeE
Q 001165 409 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN-WPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 409 ~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~-~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
|.. |+.+.+|..-|.+.+.+..+.+. ...+.... ..|.++-|+..|++++.-+.|..|
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~--------------------vas~rits~~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLEC--------------------VASFRITSVQAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchhee--------------------eeeeeechheeeeEEEEeccCcEEEEecCCceE
Confidence 555 88888888777777666433221 22233222 468999999999999999999999
Q ss_pred -EEEccCCcEE-EeCCccceeeeE--EEEEEee-------CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 487 -LYDIRQKKWR-VFGDITQEQKIQ--SKGLLWL-------GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 487 -lwd~~sg~Wk-~F~~~~~e~~~~--v~gl~W~-------~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.|++..-.-. .=+....++.+. |..+.|. +.+++++ . ...+.|-+|.+.
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~-s---~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG-S---ARAHALYIWEKS 280 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec-c---ccceeEEEEecC
Confidence 9998632100 001111122222 3344552 3455544 2 567899999884
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=167.45 Aligned_cols=229 Identities=14% Similarity=0.186 Sum_probs=170.8
Q ss_pred eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEee
Q 001165 231 QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFC 310 (1134)
Q Consensus 231 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~ 310 (1134)
.+.+|.+.+........+ -.+.+.|++-+|.|.+++.|+..|.+.+|.+. +|.++..+.
T Consensus 62 ~l~vw~i~k~~~~~q~~v------~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels---------------sG~LL~v~~ 120 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIV------LPGPVHALASSNLGYFLLAGTISGNLYLWELS---------------SGILLNVLS 120 (476)
T ss_pred cccccccCchhhhhhhcc------cccceeeeecCCCceEEEeecccCcEEEEEec---------------cccHHHHHH
Confidence 466676655433221111 13678999999999999999999999999999 899888876
Q ss_pred cccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC---------CCeeEEEeccCCCCceeeeEEcCCCCCCcceEEE
Q 001165 311 RYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 381 (1134)
Q Consensus 311 ~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~---------~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s 381 (1134)
. |-.+|+|+.||-||.+|+|||.||.|.+|++. +....+.+.+| +-+|+++...+.+. ...+.|
T Consensus 121 a----HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg~--~~rl~T 193 (476)
T KOG0646|consen 121 A----HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGGT--NARLYT 193 (476)
T ss_pred h----hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCCc--cceEEE
Confidence 6 99999999999999999999999999999873 23456777777 66899999887762 245666
Q ss_pred cc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCC-eE-EEeecCCCccccccccc
Q 001165 382 GT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED-RL-LVVQSEDTDELKILHLN 453 (1134)
Q Consensus 382 gs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~-~l-~l~~g~~~~~~~w~~~~ 453 (1134)
.+ ++++||+..+.++....- ...+ ++++| .+.+..|+.+|.+.+-++.+... +. ...++ ......
T Consensus 194 aS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~------~~~~~t 266 (476)
T KOG0646|consen 194 ASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG------RHEENT 266 (476)
T ss_pred ecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccc------cccccc
Confidence 66 999999999998877532 2233 77888 66777899999887766443221 00 00000 000111
Q ss_pred cceeeccCCC--ceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 454 LPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 454 ~~~~~~~h~~--~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
-...+.||.. +|+|+++|-||..|++|+.||.+ +||+.++.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 1345778888 99999999999999999999999 99998863
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.4e-14 Score=153.38 Aligned_cols=243 Identities=17% Similarity=0.189 Sum_probs=167.4
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
....|.+|.|+|..+.+++++=||.+.++++........ ..+..++.+++|.++ ..+++|+.||.|+.+|+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-------~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-------FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN 83 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-------eecCCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence 356799999999999999999999999999876533221 123478889999884 579999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+++.. .+. .|.++|.||.+++--..+++||+|++|++||..+....-++... ..|.++
T Consensus 84 ---------------~~~~~-~ig----th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~ 141 (323)
T KOG1036|consen 84 ---------------TGNED-QIG----THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCM 141 (323)
T ss_pred ---------------CCcce-eec----cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEE
Confidence 22221 111 29999999999998889999999999999999876666666543 367777
Q ss_pred EEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecCCC----ccEEEEec-CCEEEeeecCCcEEeeeeeeCC---CeE
Q 001165 367 IVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSS----ERVLIFSF-GKCCLNRGVSGMTYARQVIYGE---DRL 436 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~h~----~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~---~~l 436 (1134)
..+.+ ..++.+. .+.+||+.+-........+. .+-+++-| +.-.+.++.||.+.+=.+...+ .+.
T Consensus 142 ~v~g~-----~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 142 DVSGN-----RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred eccCC-----EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 66544 3444333 88999998755433222211 11144444 5556778888888765544331 111
Q ss_pred EEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 437 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 437 ~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
+.+.- |.... .-..--.||++++|+|--+.+|+||.||.| +||..++|
T Consensus 217 yaFkC--------Hr~~~--~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 217 YAFKC--------HRLSE--KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eeEEe--------eeccc--CCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 11110 00000 000112489999999999999999999999 99998764
No 131
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=5.8e-15 Score=156.42 Aligned_cols=228 Identities=14% Similarity=0.130 Sum_probs=164.3
Q ss_pred cCCCCeEEEEEcCCeEEEEEeccCCcccc-ceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLA-EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 217 sp~~~~la~~~sDG~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
.|+.+++++.+.+.-|.+|+.-.+..+.. ...... .....+.|++|||||..|..| ...+|++||+..++..-...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~--de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQ--DEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhH--HhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcch
Confidence 35667788888888999998865443211 111110 012456799999999998765 56799999996443221111
Q ss_pred eeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCC
Q 001165 296 SLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 374 (1134)
Q Consensus 296 ~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~ 374 (1134)
.... . ...+..|-+.|++||| |...+|+|+.-..+-|+.-.+++++..+.+| .+.|+.+.|.++|
T Consensus 197 ~t~~--~---------~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG-- 262 (406)
T KOG2919|consen 197 TTVT--K---------GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG-- 262 (406)
T ss_pred hhhh--c---------ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc--
Confidence 1100 0 0112578899999999 5569999999999999998888888888887 7799999999999
Q ss_pred CcceEEEcc----eeEEEeCCCceE-EEEecCCC----ccE-EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCC
Q 001165 375 KYEPLMSGT----SMMQWDEYGYRL-YAIEEGSS----ERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 443 (1134)
Q Consensus 375 ~~~~l~sgs----~i~~W~~~~~~l-~~~~~~h~----~~v-~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~ 443 (1134)
+.+.+|. .|..||++..+- +..+..|. .+| +.+.+ ++.+++|+.||.|++||+..-.+.
T Consensus 263 --n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~-------- 332 (406)
T KOG2919|consen 263 --NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE-------- 332 (406)
T ss_pred --CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc--------
Confidence 8888887 899999976542 33333443 234 55666 999999999999999998763331
Q ss_pred CccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC
Q 001165 444 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 482 (1134)
Q Consensus 444 ~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~ 482 (1134)
+..+..+...++.++++|-=..+|+++.
T Consensus 333 -----------~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 333 -----------VSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred -----------ccccccccccccceecCcccceeeeccC
Confidence 5567778888999999999888887763
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.8e-15 Score=167.63 Aligned_cols=245 Identities=14% Similarity=0.151 Sum_probs=173.0
Q ss_pred CCCCceeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE
Q 001165 18 CPSSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 18 ~~~~~~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l 96 (1134)
||+....++-+|+|.+++.++ .+.|++|... .+..+... -.|+..++++.|+-||++|++++.||.|++|.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVL------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHH------HhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 455566688899999888885 5789999997 43333222 246788999999999999999999999999998
Q ss_pred EecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCc
Q 001165 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1134)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~ 176 (1134)
..- ++.++ ++.+ .++
T Consensus 153 ~~l--------------------------------------v~a~~--------~~~~----------~p~--------- 167 (476)
T KOG0646|consen 153 TDL--------------------------------------VSADN--------DHSV----------KPL--------- 167 (476)
T ss_pred Eee--------------------------------------ccccc--------CCCc----------cce---------
Confidence 531 00111 1100 010
Q ss_pred cccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC--CCeEEEEEcCCeEEEEEeccCCccccceecccccC
Q 001165 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP--MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL 254 (1134)
Q Consensus 177 ~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~--~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~ 254 (1134)
..+.+|.-+|+++...+. ...+++++.|.++++|+++...... .+.
T Consensus 168 -------------------------~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl--ti~----- 215 (476)
T KOG0646|consen 168 -------------------------HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL--TIT----- 215 (476)
T ss_pred -------------------------eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE--EEe-----
Confidence 013344555565544443 3478889999999999998654321 111
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeec-cCcceEEEEeecccCCCCc--CeEEEEECCCCCE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD-WGMREVYYTFCRYSMDDTG--PVSCIAWTPDNSA 331 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~-~~~~~~l~~l~~~~~~h~g--~V~~l~fSPDG~~ 331 (1134)
....+.|+++.|-++.+-+|+.+|.|.+.++....+....+.-.. ...++....+.| |.+ +|+|++.|-||..
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G----h~~~~~ITcLais~Dgtl 291 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG----HENESAITCLAISTDGTL 291 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc----ccCCcceeEEEEecCccE
Confidence 125788999999999999999999999988864331111000000 003455566666 988 9999999999999
Q ss_pred EEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCC
Q 001165 332 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 371 (1134)
Q Consensus 332 Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~ 371 (1134)
|++|+.||.|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPL 330 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHHhhh-ccccceeEeecc
Confidence 999999999999999999999888743 567888887554
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6.7e-15 Score=162.59 Aligned_cols=283 Identities=14% Similarity=0.219 Sum_probs=194.3
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCce-EEEEEeCCCEEEEEEEEecC
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~-~Lav~t~dg~l~lw~l~~~~ 100 (1134)
..|.|-|...++.+++ |++++|+.++...-+...-.+ + +.-++.+++|.|+|+ .+++++...++..||+....
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~----l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH----L-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeee----e-ccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3489999999887776 789999999732111110000 0 123678899999999 88899999999999997653
Q ss_pred -cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCc-cccceeccccCCCccc
Q 001165 101 -KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE-FYGAFELVHSSNDSSV 178 (1134)
Q Consensus 101 -~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~-~~~~~~~~~~~~~~~~ 178 (1134)
.++. .+.|..-. ...--.+++++..|+++..+|+|+++.-... ....
T Consensus 292 ~~k~~----~~~g~e~~---------------~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s------------ 340 (514)
T KOG2055|consen 292 VTKLK----PPYGVEEK---------------SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS------------ 340 (514)
T ss_pred ccccc----CCCCcccc---------------hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe------------
Confidence 1111 11100000 0112345778899999999999987643211 1111
Q ss_pred cccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCC--C
Q 001165 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG--S 256 (1134)
Q Consensus 179 i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~--~ 256 (1134)
..-.+.|.++.|+.+++.+.+.+.+|.|++|+++... .+. +|.+ .
T Consensus 341 --------------------------~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-----~~~--rf~D~G~ 387 (514)
T KOG2055|consen 341 --------------------------FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS-----CLH--RFVDDGS 387 (514)
T ss_pred --------------------------eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc-----eEE--EEeecCc
Confidence 1225778999999999999999999999999997531 111 2332 2
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
-..++++.|++++++|+|+..|.|.|||.++.-... .+++++++.. -+..|++++|+||++.||-+|
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---------~PkPik~~dN----Ltt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---------NPKPIKTVDN----LTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccC---------CCCchhhhhh----hheeeeeeeeCcchhhhhhhh
Confidence 345788899999999999999999999977321110 3444544443 567899999999999888776
Q ss_pred --CCCcEEEEecCCCeeEEEeccC--CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 337 --KSRGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 337 --~Dg~I~vWdv~~~~l~~tl~~h--~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
.+..+|+-.+.++..+..++.. ..+.|++++|+|.+ -+++-|- .+.+|-+.
T Consensus 455 ~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s----G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS----GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC----ceEEeecCCCceeeEeec
Confidence 4579999999888777766542 13468999999987 6666554 66666543
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.66 E-value=7.2e-14 Score=157.54 Aligned_cols=230 Identities=13% Similarity=0.099 Sum_probs=156.9
Q ss_pred EEEEEEcCCCCeE-EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe-eeCCeEEEEecccc
Q 001165 211 IIWLELCLPMRLL-FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG-TRRGVVELYDLAES 288 (1134)
Q Consensus 211 V~~i~fsp~~~~l-a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG-~~dg~V~lwd~~~~ 288 (1134)
+.++.|+|+++.+ +++..++.+.+|+........ .+. ....+..++|+|+++.++++ +.|+.|++||+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-- 103 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG--TLP-----SGPDPELFALHPNGKILYIANEDDNLVTVIDIE-- 103 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE--ecc-----CCCCccEEEECCCCCEEEEEcCCCCeEEEEECC--
Confidence 4578999999876 456678999999876433211 111 11345678999999977554 568999999998
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC-cEEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg-~I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
+++.+..+. +...+.+++|+|||+.+++++.++ .+.+||..++.....+... ....+++
T Consensus 104 -------------~~~~~~~~~-----~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~ 163 (300)
T TIGR03866 104 -------------TRKVLAEIP-----VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAE 163 (300)
T ss_pred -------------CCeEEeEee-----CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEE
Confidence 444444433 223468899999999999998775 4677899887766554332 2456789
Q ss_pred EcCCCCCCcceE-EEcc---eeEEEeCCCceEEEEecCC-----CccE----EEEec-CCEE-EeeecCCcEEeeeeeeC
Q 001165 368 VKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKCC-LNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 368 ~sp~~~~~~~~l-~sgs---~i~~W~~~~~~l~~~~~~h-----~~~v----~~~s~-~k~l-~S~s~d~ti~~w~l~~~ 432 (1134)
|+|++ +.+ +++. .+.+|+.+++++......+ ...+ +.+++ ++.+ ++.+.++.+.+||...+
T Consensus 164 ~s~dg----~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 164 FTADG----KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred ECCCC----CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 99998 655 4432 8999999988776543211 1111 55677 6654 34455667899987543
Q ss_pred CCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEE-eCCCeE-EEEccCCc
Q 001165 433 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK 494 (1134)
Q Consensus 433 ~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsg-g~dG~i-lwd~~sg~ 494 (1134)
+.. ....+...+.+++|+|+|++|+++ +.+|.+ +||+.+++
T Consensus 240 ~~~---------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 240 EVL---------------------DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cEE---------------------EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 321 111223368899999999999987 468999 99999875
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.65 E-value=2.6e-15 Score=166.26 Aligned_cols=269 Identities=13% Similarity=0.091 Sum_probs=199.6
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCccee
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ 104 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~ 104 (1134)
+.+|...+.+-+++.+.|+|||+.++.-+... -...++.+...+..+...|||+.|++|+.-.+|-|||+......+.
T Consensus 425 vtIS~~trhVyTgGkgcVKVWdis~pg~k~Pv--sqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik 502 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKGCVKVWDISQPGNKSPV--SQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK 502 (705)
T ss_pred EEecCCcceeEecCCCeEEEeeccCCCCCCcc--ccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchh
Confidence 67788899999999999999999876332111 0112333344567899999999999999999999999987543332
Q ss_pred cCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccc
Q 001165 105 IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHH 184 (1134)
Q Consensus 105 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~ 184 (1134)
... ...+..-...++++|.+..+++.+||.|.+|+...++..+
T Consensus 503 ael-------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr------------------ 545 (705)
T KOG0639|consen 503 AEL-------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR------------------ 545 (705)
T ss_pred hhc-------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee------------------
Confidence 110 0001111235677888888899999999986654443211
Q ss_pred cCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEE
Q 001165 185 FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI 264 (1134)
Q Consensus 185 ~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~ 264 (1134)
.+.+|...+.+|..+++|..+=+++-|.+++.|+...... .+.+ .....|.++..
T Consensus 546 ------------------qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq--lqqh-----dF~SQIfSLg~ 600 (705)
T KOG0639|consen 546 ------------------QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ--LQQH-----DFSSQIFSLGY 600 (705)
T ss_pred ------------------cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh--hhhh-----hhhhhheeccc
Confidence 3568888899999999999999999999999999864332 1112 12467889999
Q ss_pred CCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEE
Q 001165 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 344 (1134)
Q Consensus 265 spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vW 344 (1134)
+|++.++|+|-.++.|.|-.... ...+.+.. |..-|.++.|++.|+.++|.+.|+-+-.|
T Consensus 601 cP~~dWlavGMens~vevlh~sk----------------p~kyqlhl----heScVLSlKFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSK----------------PEKYQLHL----HESCVLSLKFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred CCCccceeeecccCcEEEEecCC----------------ccceeecc----cccEEEEEEecccCceeeecCchhhhhhc
Confidence 99999999999999998877652 11222222 88889999999999999999999999999
Q ss_pred ecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 345 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 345 dv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
.+.-|..+...+. .++|.++.+|.|+ .++++|+
T Consensus 661 rtPyGasiFqskE--~SsVlsCDIS~dd----kyIVTGS 693 (705)
T KOG0639|consen 661 RTPYGASIFQSKE--SSSVLSCDISFDD----KYIVTGS 693 (705)
T ss_pred cCccccceeeccc--cCcceeeeeccCc----eEEEecC
Confidence 9865554544444 5789999999998 8889887
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=5.3e-15 Score=172.10 Aligned_cols=278 Identities=15% Similarity=0.191 Sum_probs=184.0
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeecee--eccccccceEEEeeeCCCeEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQ--LPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~~~~~V~~~s~d~~~ll 146 (1134)
....+.-.+|-..|++++.. .++||.+......... ......+ +.....++ ... ..+.+.|+
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~-------------~~~~k~kqn~~~S~~DV-kW~-~~~~NlIA 104 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKC-------------NHRFKTKQNKFYSAADV-KWG-QLYSNLIA 104 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcce-------------eeecccccceeeehhhc-ccc-cchhhhhe
Confidence 34567777888888888764 6899998754321110 0000000 00000010 111 23557789
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC-CeEEE
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFV 225 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~-~~la~ 225 (1134)
+++.+|.|.+|+..-....+. ...+..|.-.|.++.|++.. +++++
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~---------------------------------l~~f~EH~Rs~~~ldfh~tep~iliS 151 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKL---------------------------------LTVFNEHERSANKLDFHSTEPNILIS 151 (839)
T ss_pred eecCCCcEEEEecCccccchh---------------------------------hhHhhhhccceeeeeeccCCccEEEe
Confidence 999999998754432111100 01356788899999999875 78999
Q ss_pred EEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcce
Q 001165 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMRE 304 (1134)
Q Consensus 226 ~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~ 304 (1134)
|+.||.|.+|++......... ..+.+.|..|.|+| .+..+|++..+|.+++||+..+. .
T Consensus 152 GSQDg~vK~~DlR~~~S~~t~------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~--------------r 211 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKKSKSTF------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD--------------R 211 (839)
T ss_pred cCCCceEEEEeeecccccccc------cccchhhhceeeccCCCceEEEecCCceEEEeeccCch--------------h
Confidence 999999999999754432211 11346678899999 46689999999999999998432 2
Q ss_pred EEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe--eEEEeccCCCCceeeeEEcCCCCCCcceEEEc
Q 001165 305 VYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 382 (1134)
Q Consensus 305 ~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~--l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg 382 (1134)
....+. +|.|+|.|+.|+|++.+|||||.|+.|+||++.+++ .+.++.. .++|..++|-|... ..|+++
T Consensus 212 ~~~k~~----AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~---~hLAtc 282 (839)
T KOG0269|consen 212 CEKKLT----AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPVGRVKWRPARS---YHLATC 282 (839)
T ss_pred HHHHhh----cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--cceeeeeeeccCcc---chhhhh
Confidence 222233 399999999999999999999999999999998765 3445543 57899999999862 345655
Q ss_pred c-----eeEEEeCCC-ceEEEEecCCCccEEEEec----CCEEEeeecCCcE
Q 001165 383 T-----SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMT 424 (1134)
Q Consensus 383 s-----~i~~W~~~~-~~l~~~~~~h~~~v~~~s~----~k~l~S~s~d~ti 424 (1134)
+ .+.+||+.- |-...+...|++.+..+.+ ...+.+++.|+++
T Consensus 283 smv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 283 SMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred hccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 5 899999854 5556677777766633333 1233455555544
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.4e-14 Score=149.22 Aligned_cols=281 Identities=15% Similarity=0.146 Sum_probs=175.8
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEee---e-CC
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV---S-DN 142 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s---~-d~ 142 (1134)
.+-+.+|.|.+-|+.+|++++|++++|||...+...... +-.|. .++++|..+. | -|
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~-----------Ts~Wr--------ah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC-----------TSSWR--------AHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE-----------eeeEE--------ecCCcEEEEEecCcccc
Confidence 345789999999999999999999999997543221111 11121 1223333221 1 36
Q ss_pred CeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC--C
Q 001165 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP--M 220 (1134)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~--~ 220 (1134)
+-+++++-|+++.+ |+.+. .... .+ ..+++ ....+....+.|++|.|+|. |
T Consensus 74 qvvA~cS~Drtv~i--WEE~~-~~~~--~~-----~~~Wv-----------------~~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 74 QVVATCSYDRTVSI--WEEQE-KSEE--AH-----GRRWV-----------------RRTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred ceEEEEecCCceee--eeecc-cccc--cc-----cceeE-----------------EEEEeecCCcceeEEEecchhcc
Confidence 77888899999987 44321 1110 00 00110 11235567889999999997 5
Q ss_pred CeEEEEEcCCeEEEEEeccCC-c--cccc-eec---ccccCCCCCeEEEEECCC---CCEEEEeeeC-----CeEEEEec
Q 001165 221 RLLFVLYSNGQLMSCSVSKKG-L--KLAE-FIK---IDKELGSGDAVCASIAPE---QQILAVGTRR-----GVVELYDL 285 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~-~--~~~~-~~~---~~~~~~~~~~~~va~spd---g~llAsG~~d-----g~V~lwd~ 285 (1134)
-.+|+++.||.++++...... . ++.+ .+. ...-.+.....|+.|||. ..+||+|+.+ +.+.||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 688999999999998874321 1 1111 111 000012356789999984 4689999877 57899988
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC----CCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD----NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD----G~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
.+.+...+ .+.++. +|+.+|++|+|.|. -+.||+|+.|| |+||.+...+. .+...
T Consensus 207 ~e~~rKw~-----------kva~L~----d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~~e--- 265 (361)
T KOG2445|consen 207 NENGRKWL-----------KVAELP----DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIEEE--- 265 (361)
T ss_pred cCCcceee-----------eehhcC----CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc--hhhhh---
Confidence 75432211 122233 49999999999994 34899999998 99999975431 11110
Q ss_pred ceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCC
Q 001165 362 SISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
++. .|++..+++ -+++..+.+|.+.|+.+.+ |..+.|.|.||++++|.....+
T Consensus 266 e~~----~~~~~~~l~---------------v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 266 EVL----APDLMTDLP---------------VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred ccc----CCCCccccc---------------eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 011 122211110 1344556789999977766 8899999999999999865443
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.64 E-value=7.5e-15 Score=162.75 Aligned_cols=251 Identities=13% Similarity=0.116 Sum_probs=175.1
Q ss_pred CCCCeEEEEECCCC-CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EE
Q 001165 255 GSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AF 332 (1134)
Q Consensus 255 ~~~~~~~va~spdg-~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~L 332 (1134)
+.+.|+.+..-|+. .+||+++.++.|.|||..+..+...... .-.+-.+++| |.+.=+.|+|++.-. .|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----~~~Pdl~L~g----H~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----ECRPDLRLKG----HEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----cCCCceEEEe----ecccccccccccccceeE
Confidence 34666677777754 4688889999999999985543322110 0112234555 888778899999555 89
Q ss_pred EEEECCCcEEEEecCCCe-------eEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC--CceEEEEec
Q 001165 333 AVGWKSRGLTVWSVSGCR-------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY--GYRLYAIEE 400 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~~~~-------l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~--~~~l~~~~~ 400 (1134)
++|+.|++|++||+.... ....+.+| .+.|..++|+|-.+ ..+.+.+ .+++||.+ +.+.-....
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~---~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHE---DLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecC-Ccceehhhccccch---hhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 999999999999995422 23445566 78999999999873 3444443 89999998 555666667
Q ss_pred CCCccEE--EEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC-CC
Q 001165 401 GSSERVL--IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GM 475 (1134)
Q Consensus 401 ~h~~~v~--~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd-G~ 475 (1134)
+|+..|. .|+| +-.+||+|.|+++.+||+..-..+ +.++.+|...|.+|.|||. ..
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~-------------------lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP-------------------LHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC-------------------ceeccCCCcceEEEEeCCCCCc
Confidence 8999994 5555 668899999999999998765542 6788899999999999995 67
Q ss_pred EEEEEeCCCeE-EEEccCCcEEE---e-CCccce-------eeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 476 FLAVAGLHGLI-LYDIRQKKWRV---F-GDITQE-------QKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 476 ~LAsgg~dG~i-lwd~~sg~Wk~---F-~~~~~e-------~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.||++|.||.+ +||+..--=+. . .+...| +...|..+.|.++.--+.|.. ..+..|++|...
T Consensus 331 vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv--aeDN~LqIW~~s 404 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV--AEDNILQIWQMA 404 (422)
T ss_pred eeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe--cCCceEEEeecc
Confidence 88999999999 99985321010 0 000011 112356799997754333344 334678898763
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.2e-13 Score=145.97 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=179.3
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEecc-CCccccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeEE
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVVE 281 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V~ 281 (1134)
.+|+.-|.++.|++.|+.+|++++|+++.+|+..+ .+.+.....+. .+.+.+..|.|.| =|+.+|+++.|++++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr---ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR---AHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE---ecCCcEEEEEecCccccceEEEEecCCcee
Confidence 46777899999999999999999999999999643 23333333331 3557788888866 378999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEecCCCe------eEE
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCR------LMS 353 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWdv~~~~------l~~ 353 (1134)
||.-.......+.. .=....++.. ..+.|++|.|.| -|-.||+++.||++||+...... +++
T Consensus 87 iWEE~~~~~~~~~~------~Wv~~ttl~D----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGR------RWVRRTTLVD----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred eeeecccccccccc------eeEEEEEeec----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 99874211100000 0012223333 678999999999 68899999999999999875432 222
Q ss_pred Eec------cCCCCceeeeEEcCCCCCCcceEEEcc--------eeEEEeC--CCceEEE--EecCCCccEE--EEec--
Q 001165 354 TIR------QISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDE--YGYRLYA--IEEGSSERVL--IFSF-- 411 (1134)
Q Consensus 354 tl~------~h~~~~V~sv~~sp~~~~~~~~l~sgs--------~i~~W~~--~~~~l~~--~~~~h~~~v~--~~s~-- 411 (1134)
.+. +....+-.++.++|... .-+.++-|+ .+++|.- ++.+... .+.+|.+.|. +|.|
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~-~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRM-HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccc-cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 222 11134556777776532 114555555 5667754 3323332 3458889994 4555
Q ss_pred CC---EEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccc-cccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-
Q 001165 412 GK---CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI-LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 486 (1134)
Q Consensus 412 ~k---~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w-~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i- 486 (1134)
|+ .+++++.|| +++|.+......+ .-.+...++..- -.++....+-+|+.+|+.+.|+=.|..|++.|.||.+
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 44 678999999 9999876422211 001111111111 1233455688999999999999999999999999999
Q ss_pred EEEcc
Q 001165 487 LYDIR 491 (1134)
Q Consensus 487 lwd~~ 491 (1134)
+|..+
T Consensus 314 LWkan 318 (361)
T KOG2445|consen 314 LWKAN 318 (361)
T ss_pred ehhhh
Confidence 99764
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.7e-14 Score=147.83 Aligned_cols=249 Identities=14% Similarity=0.219 Sum_probs=167.8
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEE
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGW 336 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~ 336 (1134)
|-.+...--|+.||+++.|++|||+.+.+... .+++.+|.| |.|||..++|-. -|..|||++
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------s~ll~~L~G----h~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------SKLLAELTG----HSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------ceeeeEecC----CCCCeeEEeecccccCcEeeEee
Confidence 33455556788999999999999999984321 256677777 999999999977 899999999
Q ss_pred CCCcEEEEecCCCeeEEEecc-CCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEE
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 415 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l 415 (1134)
.||.|.||.-.+++-...... .|.+.|++++|-|.+ + |-.+
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphe--------------------y------------------gl~L 119 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHE--------------------Y------------------GLLL 119 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeecccccc--------------------c------------------ceEE
Confidence 999999999988753222111 225667777776654 1 1234
Q ss_pred EeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC---C-----------CEEEEEe
Q 001165 416 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD---G-----------MFLAVAG 481 (1134)
Q Consensus 416 ~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd---G-----------~~LAsgg 481 (1134)
+.++.||+|.+..+..... |.. ......|.-.|+++++.|- | +.||+||
T Consensus 120 acasSDG~vsvl~~~~~g~--------------w~t---~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 120 ACASSDGKVSVLTYDSSGG--------------WTT---SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred EEeeCCCcEEEEEEcCCCC--------------ccc---hhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 6677788887766543311 111 1223356667888888775 6 7899999
Q ss_pred CCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCE------EEEEEEecCCCeeEEEEEeCC-CCCCcceeEEEecC
Q 001165 482 LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI------IVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLL 553 (1134)
Q Consensus 482 ~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~------lv~~~~~~~~~~~eLrly~~~-~ld~~~~~~~~~l~ 553 (1134)
.|.++ +|+..++.|++-... +.+.--|+.++|.+.. ++.| +.+..+.+|..+ ....-.....+++|
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~-----SqDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASC-----SQDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred CccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEe-----cCCCcEEEEEecCccCcccccccccCC
Confidence 99999 999999999863321 1112247788997543 3333 566778899875 21211111112345
Q ss_pred Ccc--EEEEecCCEEEEEEcCCeEEEEEEEEec
Q 001165 554 AKP--IVMDVYEDYILVTYRPFDVHIFHVKLFG 584 (1134)
Q Consensus 554 ~~~--~~l~~~~d~llv~~~d~~i~l~~~~~~~ 584 (1134)
.+. +.-+..++.|.|.+.|+.+++|+=..+|
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 433 3456788899999999999999654444
No 141
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1e-13 Score=146.96 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=186.1
Q ss_pred CCCCcee--EEEeecCe-EEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEE
Q 001165 18 CPSSQQI--IYFKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIF 94 (1134)
Q Consensus 18 ~~~~~~i--v~fS~dg~-llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw 94 (1134)
||....| |.|+|.+. |||+.-|++++++++... .... .+.+.+++.+.+|-++ ..+++++.||.|+.+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~-------~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKL-------KFKHGAPLLDCAFADE-STIVTGGLDGQVRRY 80 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhh-------heecCCceeeeeccCC-ceEEEeccCceEEEE
Confidence 3333445 78888865 566666999999999732 1111 2335678899999885 688999999999999
Q ss_pred EEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeC--CCeEEEEecCCcEEEEecCCccccceecccc
Q 001165 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (1134)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d--~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~ 172 (1134)
|+.++.... ++.++..+.|+... .+.+++|+-|++|.. ||+......
T Consensus 81 Dln~~~~~~------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~--wD~R~~~~~----- 129 (323)
T KOG1036|consen 81 DLNTGNEDQ------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKF--WDPRNKVVV----- 129 (323)
T ss_pred EecCCccee------------------------eccCCCceEEEEeeccCCeEEEcccCccEEE--Eeccccccc-----
Confidence 998753211 23344456666543 567889999999987 555421100
Q ss_pred CCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc-cceeccc
Q 001165 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKID 251 (1134)
Q Consensus 173 ~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~ 251 (1134)
........|.++ +-.++.++++++|.++.+|++....... ... ...
T Consensus 130 ------------------------------~~~d~~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~re-S~l 176 (323)
T KOG1036|consen 130 ------------------------------GTFDQGKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRE-SSL 176 (323)
T ss_pred ------------------------------cccccCceEEEE--eccCCEEEEeecCceEEEEEcccccchhhhcc-ccc
Confidence 001122366666 4567889999999999999987543221 111 010
Q ss_pred ccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccc-ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC
Q 001165 252 KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS 330 (1134)
Q Consensus 252 ~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~-~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~ 330 (1134)
.-.+.|+++.|++.=.|+++-||.|.+=.+++... ..+.+..+ +.+...+ ...---||++|+|+|--.
T Consensus 177 ----kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk------CHr~~~~-~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 177 ----KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK------CHRLSEK-DTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred ----eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE------eeecccC-CceEEEEeceeEeccccc
Confidence 13467999999888899999999999877775421 11111110 0000000 000123799999999988
Q ss_pred EEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 331 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 331 ~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
.||||+.||.|.+||.+..+.++.+... ...|.+++|+.+| ..|+.++
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG----~~LAia~ 293 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDG----SLLAIAS 293 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCC----CeEEEEe
Confidence 9999999999999999998888888776 5679999999998 7777543
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.4e-15 Score=175.52 Aligned_cols=218 Identities=17% Similarity=0.244 Sum_probs=178.1
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..+.|..+-..++.+++|+.|..+-||.+.+ ...+..+.+ |.++|.||.|+++-..|++|.
T Consensus 29 aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---------------p~~i~S~~~----hespIeSl~f~~~E~Llaags 89 (825)
T KOG0267|consen 29 AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---------------PNAITSLTG----HESPIESLTFDTSERLLAAGS 89 (825)
T ss_pred hhhceeeeeccceeeccCCCceeeccccccC---------------Cchhheeec----cCCcceeeecCcchhhhcccc
Confidence 3445666656778999999999999999883 223333445 999999999999999999999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF 411 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~ 411 (1134)
.+|+|++||+..+..+++|.+| ...+.++.|+|.+ ++.++|+ ..++||....-|.....+|...+ ..|+|
T Consensus 90 asgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP 164 (825)
T ss_pred cCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecCCcceeEEEeecC
Confidence 9999999999999999999998 7889999999999 8888888 78899998777888888877655 77888
Q ss_pred -CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 412 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
|+.+++++.|.++++||...|+- ...|.+|..+|.++.|.|..-.+++||.|+++ +||
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred CCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhccCCCCceeeeec
Confidence 99999999999999999877664 56789999999999999999999999999999 999
Q ss_pred ccCCcEEEeCCccceeeeEEEEEEeeCCEEEE
Q 001165 490 IRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 521 (1134)
Q Consensus 490 ~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~ 521 (1134)
+.+= .+.+...+|. +.|.+.....+.-++
T Consensus 225 letf--e~I~s~~~~~-~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 225 LETF--EVISSGKPET-DGVRSLAFNPDGKIV 253 (825)
T ss_pred ccee--EEeeccCCcc-CCceeeeecCCceee
Confidence 9752 3344433442 335566666554443
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.60 E-value=9.3e-14 Score=145.55 Aligned_cols=287 Identities=15% Similarity=0.118 Sum_probs=183.9
Q ss_pred ceEEEeee---CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcc
Q 001165 133 LSVSNIVS---DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (1134)
Q Consensus 133 ~~V~~~s~---d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~ 209 (1134)
++|.++.- .|.++++|..||.+.+|+.........+.- -+...++ + ......+|+-
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l--i~k~~c~--v-----------------~~~h~~~Hky 102 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL--IAKHKCI--V-----------------AKQHENGHKY 102 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccc--eeheeee--c-----------------cccCCcccee
Confidence 34544443 367899999999998865543321111000 0000000 0 0113457888
Q ss_pred cEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC---CCEEEEeeeCCeEEEEec
Q 001165 210 AIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE---QQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 210 ~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd---g~llAsG~~dg~V~lwd~ 285 (1134)
.|.++.|-|- ...|.+.+=|.++.+|+.+...... .. .-.+.+.+-++||- .-+||+|..|-+|++-|+
T Consensus 103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~--~F-----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV--DF-----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred eeeeeEEeeecCceeecccccceEEEeecccceeeE--Ee-----ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 8999888875 5677778889999999987532111 11 11356777788883 458999999999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCC-eeEEEeccC-----
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQI----- 358 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~-~l~~tl~~h----- 358 (1134)
. +|...+++.| |.+.|.+|.|||... .||+|+.||.|++||+... -++.++..|
T Consensus 176 ~---------------SGs~sH~LsG----Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 176 A---------------SGSFSHTLSG----HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP 236 (397)
T ss_pred c---------------CCcceeeecc----ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence 9 8888888888 999999999999666 7899999999999999643 344444433
Q ss_pred --------CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecC---CCccE-EEEe--c--CCEEEeee
Q 001165 359 --------SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERV-LIFS--F--GKCCLNRG 419 (1134)
Q Consensus 359 --------~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~---h~~~v-~~~s--~--~k~l~S~s 419 (1134)
|.+.|++++|..++ ..+++.+ .+++|+...|+--....+ |.... ..+. - ...++-.-
T Consensus 237 p~~~~n~ah~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p 312 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFP 312 (397)
T ss_pred ccccccccccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEe
Confidence 24568899999988 6666655 899999877654322211 11111 1111 0 00000011
Q ss_pred cCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 420 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 420 ~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
.++++.+..+..++. ...+.+|-..|.+.++-|+=+...+|..||.+ .|..
T Consensus 313 ~~~~lall~~~sgs~--------------------ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 313 NDGSLALLNLLEGSF--------------------VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCCeEEEEEccCceE--------------------EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 112333322222221 33455676779999999999999999999999 8976
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.8e-14 Score=167.76 Aligned_cols=242 Identities=14% Similarity=0.201 Sum_probs=175.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVG 335 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg 335 (1134)
.++..++.+++-..|+.++. ...+||.+....... ++....++ ...-.-....|+|.. +.++||++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~-----------~~~~~~k~-kqn~~~S~~DVkW~~~~~NlIAT~ 106 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSE-----------KCNHRFKT-KQNKFYSAADVKWGQLYSNLIATC 106 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCc-----------ceeeeccc-ccceeeehhhcccccchhhhheee
Confidence 45678888998888887764 478888887432111 01100000 000112356788875 67799999
Q ss_pred ECCCcEEEEecCC---CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--E
Q 001165 336 WKSRGLTVWSVSG---CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--L 407 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~---~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~ 407 (1134)
+.+|.|.+||+.. ..++..+..| ...++.+.|++..+ ..++||+ ++++||.+..+-..+..+..+.| +
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH-~Rs~~~ldfh~tep---~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEH-ERSANKLDFHSTEP---NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhh-ccceeeeeeccCCc---cEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 9999999999975 4455567777 78999999998864 6788998 99999998776666666666667 7
Q ss_pred EEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 408 IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 408 ~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
+|++ +...+++...|.+.+||+.+.... ...+..|++||.++.++|++.+||+||+|+.
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-------------------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRC-------------------EKKLTAHNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhH-------------------HHHhhcccCceEEEeecCCCceeeecCCCcc
Confidence 8888 778999999999999999886652 3467799999999999999999999999999
Q ss_pred E-EEEccCCcEEEeCCccceeeeEEEEEEeeCC---EEEEEEEecCCCeeEEEEEeCC
Q 001165 486 I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK---IIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 486 i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~---~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+ +||+.+++-+ ....-+....++.+.|-+. .|.+|.. ..+.+|++|+..
T Consensus 244 vkiWd~t~~~~~--~~~tInTiapv~rVkWRP~~~~hLAtcsm---v~dtsV~VWDvr 296 (839)
T KOG0269|consen 244 VKIWDMTDSRAK--PKHTINTIAPVGRVKWRPARSYHLATCSM---VVDTSVHVWDVR 296 (839)
T ss_pred EEEEeccCCCcc--ceeEEeecceeeeeeeccCccchhhhhhc---cccceEEEEeec
Confidence 9 9999876432 2222233234667899644 3444422 467889999873
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.60 E-value=6e-13 Score=151.70 Aligned_cols=254 Identities=15% Similarity=0.111 Sum_probs=170.8
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
-.-++|.|||..|..+.++.+.|+|.+.+ .++...+ .|.+.+.+|+||.||+.+|+|++|..|.+|+....+.
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG-~llqtLK------gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDG-TLLQPLK------GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCc-ccccccc------cccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 34489999999888888889999999844 3333332 2456799999999999999999999999999865432
Q ss_pred ceecCCCCCCCcceeeEEE------------------eeceeecccc-ccceE--EEeeeCCCeEEEEecCCcEEEEecC
Q 001165 102 SIQIGGKQPSGLFFIKISL------------------VLNEQLPFAE-KGLSV--SNIVSDNKHMLLGLSDGSLYSISWK 160 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~------------------~~~~~~~~~~-~~~~V--~~~s~d~~~llv~t~dg~v~~~~wd 160 (1134)
.-|. | +..+.++.| +++.+..... ....+ +++..||+.++.|..+|+|.+-.-.
T Consensus 88 LkYS--H---~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 88 LKYS--H---NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eeec--c---CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 1121 1 011222222 2222111111 11223 3455689999999999998765434
Q ss_pred CccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-----eEEEEEcCCeEEEE
Q 001165 161 GEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-----LLFVLYSNGQLMSC 235 (1134)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-----~la~~~sDG~v~l~ 235 (1134)
++...... -..+.+++|.+|.|+|... .++++.=+.++.++
T Consensus 163 gEek~~I~----------------------------------Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 163 GEEKVKIE----------------------------------RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred CCcceEEe----------------------------------CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 43222211 1224578899999999743 45555555555555
Q ss_pred EeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCC
Q 001165 236 SVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMD 315 (1134)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~ 315 (1134)
++++.-..... .+ ..+..|+++-|+|.++..|+.|+.+++|.-+ |-.+.|+..
T Consensus 209 ~LsG~~Igk~r------~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~----------------GvrLGTvg~---- 261 (1081)
T KOG1538|consen 209 QLSGKQIGKDR------AL-NFDPCCISYFTNGEYILLGGSDKQLSLFTRD----------------GVRLGTVGE---- 261 (1081)
T ss_pred Eecceeecccc------cC-CCCchhheeccCCcEEEEccCCCceEEEeec----------------CeEEeeccc----
Confidence 55432221111 11 2567899999999999999999999999765 444444433
Q ss_pred CCcCeEEEEECCCCCEEEEEECCCcEEEEecCC
Q 001165 316 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
....|.+|+..|+|+..+.|+.||+|..+++..
T Consensus 262 ~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 262 QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 567899999999999999999999999998743
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5e-13 Score=141.43 Aligned_cols=289 Identities=11% Similarity=0.090 Sum_probs=171.7
Q ss_pred CCcccccCCCCCCCCCceeEEEeecCeEEEEE-cCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEE
Q 001165 6 GWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV 84 (1134)
Q Consensus 6 gwp~~~~~~~~~~~~~~~iv~fS~dg~llAs~-s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav 84 (1134)
-.|-.+- .+.+||+ ..++.||+-|.++|++ .++.|.|||..+-+ ..|... .|--++.+++|||||+.|.+
T Consensus 12 ~~PEel~-~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----iar~ls--aH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 12 EYPEELT-HTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----IARMLS--AHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cChHhhc-eeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccc-----hhhhhh--ccccceeEEEecCCCCEeee
Confidence 3555553 2444666 6778999999999996 58899999997322 122221 13357899999999999999
Q ss_pred EeCCCEEEEEEEEecCccee-cCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCcc
Q 001165 85 VTSSLYLHIFKVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF 163 (1134)
Q Consensus 85 ~t~dg~l~lw~l~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~ 163 (1134)
++.|..+.+||+-.+. .++ .... .++....|.|.. .+..++.--+..-+++..++..
T Consensus 83 sS~D~si~lwDl~~gs-~l~rirf~----spv~~~q~hp~k-----------------~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGS-PLKRIRFD----SPVWGAQWHPRK-----------------RNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred ecCCceeEEEeccCCC-ceeEEEcc----Cccceeeecccc-----------------CCeEEEEEecCCcEEEEecCCc
Confidence 9999999999997653 211 1000 022233333322 1111111112212222222210
Q ss_pred ccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc
Q 001165 164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK 243 (1134)
Q Consensus 164 ~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~ 243 (1134)
. +..|...++++ +....+..|.+.|+++.+|++.|.+.+++.......
T Consensus 141 h---------------~~Lp~d~d~dl-----------------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 141 H---------------SVLPKDDDGDL-----------------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV 188 (405)
T ss_pred e---------------eeccCCCcccc-----------------ccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence 0 00111111111 111112378999999999999999999887654321
Q ss_pred ccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceE--EEEeecccCCCCcCeE
Q 001165 244 LAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREV--YYTFCRYSMDDTGPVS 321 (1134)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~--l~~l~~~~~~h~g~V~ 321 (1134)
. .+.. .....+..+-|+.+|+.+++-+.|..||.|++++--...+ .+++ .+.+.. .-.+-.=.
T Consensus 189 a--s~ri---ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r--------~~e~e~~~K~qD--vVNk~~Wk 253 (405)
T KOG1273|consen 189 A--SFRI---TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR--------DGEVEPEHKLQD--VVNKLQWK 253 (405)
T ss_pred e--eeee---chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc--------cCCcChhHHHHH--HHhhhhhh
Confidence 1 1110 1125566789999999999999999999999873210000 0110 000000 00122346
Q ss_pred EEEECCCCCEEEEEEC-CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 322 CIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 322 ~l~fSPDG~~Lasg~~-Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
+++||.||.+++.|+. -..+.||....|.+++.+.|......-.+.++|-.
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 7899999999988764 47899999999999999987532345566666654
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.56 E-value=1.8e-13 Score=151.91 Aligned_cols=255 Identities=15% Similarity=0.164 Sum_probs=178.1
Q ss_pred EEEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 211 IIWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
+.++.|+.... +++++. |..+.+|.-++..+.... . ........+|++.+....++++|+.+|+|+|||+.
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~-~---~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-- 109 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPR-V---RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-- 109 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccce-e---eccccchHHHHhhhhcceeeeccCcCceeeehhhH--
Confidence 66777777665 444443 344566665544221111 0 11122456788877777999999999999999998
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEE
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 368 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~ 368 (1134)
...+.+.+++ |+..|++|.+.-...+||+++..|.|.|.++.++....++.......|.-+.|
T Consensus 110 -------------~kl~hr~lkd----h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~y 172 (673)
T KOG4378|consen 110 -------------AKLIHRFLKD----HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRY 172 (673)
T ss_pred -------------HHHHhhhccC----CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeec
Confidence 3333444455 99999999999999999999999999999999887777776543446778889
Q ss_pred cCCCCCCcceE-EEcc---eeEEEeCCCceEEEE-ecCCCccE--EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEe
Q 001165 369 KPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAI-EEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV 439 (1134)
Q Consensus 369 sp~~~~~~~~l-~sgs---~i~~W~~~~~~l~~~-~~~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~ 439 (1134)
+|.. +.+ .+.+ .+.+||+++...++- ...|..+- ++|+| -..++|.+.|..+.++|+.....
T Consensus 173 s~sk----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----- 243 (673)
T KOG4378|consen 173 SPSK----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----- 243 (673)
T ss_pred cccc----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----
Confidence 8875 443 3333 899999998766544 34566554 88888 56788999999999999653221
Q ss_pred ecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeC
Q 001165 440 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 516 (1134)
Q Consensus 440 ~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~ 516 (1134)
..-+.-..|...++|+++|.+|++|...|.+ .||++..+-..-....|.. .|+.+.|-.
T Consensus 244 ----------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--sVt~vafq~ 303 (673)
T KOG4378|consen 244 ----------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--SVTRVAFQP 303 (673)
T ss_pred ----------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--ceeEEEeee
Confidence 1122334588999999999999999999999 9999876422211112222 255666643
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.55 E-value=9.1e-14 Score=150.26 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=148.2
Q ss_pred HHhhcceeEEEEcC--CceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeC
Q 001165 64 VQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD 141 (1134)
Q Consensus 64 l~~~G~~~~v~wSP--Dg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d 141 (1134)
+.++|.+..+.-+| +....|+=+..|.|.||++....+.+... +..+..-.+.|-.+.......+...++++.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~-----~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEP-----GLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCc-----cccccccccCceEEecccCccceeeecccc
Confidence 34567665555555 44566666788999999996432211110 001111111111111112234455677763
Q ss_pred CC-eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC
Q 001165 142 NK-HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (1134)
Q Consensus 142 ~~-~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~ 220 (1134)
-. .+++|-.-+.++. |.... +.... ...++.+|...|-++.|||.-
T Consensus 223 ~~g~LlsGDc~~~I~l--w~~~~-g~W~v------------------------------d~~Pf~gH~~SVEDLqWSptE 269 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHL--WEPST-GSWKV------------------------------DQRPFTGHTKSVEDLQWSPTE 269 (440)
T ss_pred cccccccCccccceEe--eeecc-Cceee------------------------------cCccccccccchhhhccCCcc
Confidence 22 2444444445554 44333 22110 012456789999999999985
Q ss_pred -CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeec
Q 001165 221 -RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1134)
Q Consensus 221 -~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~ 299 (1134)
+.|++++-||.+++|++.....+..-... .+.++|+.++||-+..+||+|+.||+++|||++.-.
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~k----Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~---------- 335 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVSTK----AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK---------- 335 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEee----ccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc----------
Confidence 68999999999999999754332221222 255799999999999999999999999999998321
Q ss_pred cCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCC
Q 001165 300 WGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 300 ~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
.++++.+++- |+++|++|.|+| +...||+++.|..|.+||+.-
T Consensus 336 --~~~pVA~fk~----Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 336 --SGQPVATFKY----HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred --CCCcceeEEe----ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 4567777776 999999999999 566889999999999999853
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.55 E-value=5.2e-13 Score=142.28 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=160.7
Q ss_pred CcccEEEEEEcCCCC----eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC-CEEEEeeeCCeEE
Q 001165 207 ISSAIIWLELCLPMR----LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGVVE 281 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~----~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~V~ 281 (1134)
+......++|+-+.+ ++|+++.-|.+++.++....... ... .+...+..+.+.|+. +++.+|+.|.+||
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--~~~----ghG~sINeik~~p~~~qlvls~SkD~svR 161 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--NYR----GHGGSINEIKFHPDRPQLVLSASKDHSVR 161 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--cee----ccCccchhhhcCCCCCcEEEEecCCceEE
Confidence 344555666665543 57777788889998875432110 011 133667789999965 6899999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeE----EE---
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM----ST--- 354 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~----~t--- 354 (1134)
+|+++ +..++..+.| ..+|.+.|.++.|++||.+|||++.|.++++|++...+.. ++
T Consensus 162 lwnI~---------------~~~Cv~VfGG-~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 162 LWNIQ---------------TDVCVAVFGG-VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred EEecc---------------CCeEEEEecc-cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 99999 6777776664 4469999999999999999999999999999999732211 11
Q ss_pred ---------------e-----ccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC-ceEEE-------------
Q 001165 355 ---------------I-----RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYA------------- 397 (1134)
Q Consensus 355 ---------------l-----~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~-~~l~~------------- 397 (1134)
+ ...|.+.|.++.|-- ++++|-+ .|..|-+.. .+-+.
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~ 299 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG 299 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHHh------hheeecccCceEEEEecchhhhhhhccCCCccceeeee
Confidence 0 011133444444422 3455433 888998832 11111
Q ss_pred EecCCCccE----EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeec--cCCCceEEEEE
Q 001165 398 IEEGSSERV----LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAA 470 (1134)
Q Consensus 398 ~~~~h~~~v----~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~--~h~~~V~~va~ 470 (1134)
...-....+ ++|++ .+.++.|+..|.+.+||+...+.. . ..++. .....|++.+|
T Consensus 300 ~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-----------------~-~ttl~~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 300 EFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-----------------K-CTTLTHSKSGSTVRQTSF 361 (385)
T ss_pred EeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-----------------c-CceEEeccccceeeeeee
Confidence 111112233 33444 889999999999999998765541 0 11222 23457999999
Q ss_pred cCCCCEEEEEeCCCeE-EEEcc
Q 001165 471 SKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 471 SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
|.||..|+...+||+| -||..
T Consensus 362 S~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999 88864
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.53 E-value=3.2e-13 Score=149.45 Aligned_cols=278 Identities=14% Similarity=0.173 Sum_probs=174.4
Q ss_pred CCCeEEEEECCCC--CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEE
Q 001165 256 SGDAVCASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAF 332 (1134)
Q Consensus 256 ~~~~~~va~spdg--~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~L 332 (1134)
...|+|++|+|.. +++|+|..-|+|-+||++.... ...-++.+.+ |.++|.++.|+| +-..+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------d~d~v~~f~~----hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------DKDGVYLFTP----HSGPVSGLKFSPANTSQI 250 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------ccCceEEecc----CCccccceEecCCChhhe
Confidence 4789999999965 5899999999999999961111 1112223333 999999999999 44588
Q ss_pred EEEECCCcEEEEecCCCee--EEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceE-EEEecCCCccE
Q 001165 333 AVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV 406 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~~~~l--~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l-~~~~~~h~~~v 406 (1134)
.+.+.||+|++=|+.+... +.++... ...++++.|+.+. ..+..|. ..-+||.+...- +--..-|...|
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 8999999999999987542 2222211 2345566666554 4444444 445787754321 22223455677
Q ss_pred --EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc-eeeccCCCceEEEEEcCCCCEEEEEe
Q 001165 407 --LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAG 481 (1134)
Q Consensus 407 --~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~-~~~~~h~~~V~~va~SpdG~~LAsgg 481 (1134)
+++.| -..++|+|.|+|.++||+.+-..+- -| .....|.-+|.++.|||+|-.|++-+
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeec
Confidence 67777 4578999999999999987644320 01 23457889999999999988899999
Q ss_pred CCCeE-EEEcc--CCcEEEeCCccceee----eEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEec
Q 001165 482 LHGLI-LYDIR--QKKWRVFGDITQEQK----IQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL 552 (1134)
Q Consensus 482 ~dG~i-lwd~~--sg~Wk~F~~~~~e~~----~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l 552 (1134)
.|..| +||.. +.+-...+...|... .......|. .++++++.|. ..|-+|+-. ...+++..-.
T Consensus 389 ~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----r~IDv~~~~---~~q~v~el~~ 460 (498)
T KOG4328|consen 389 QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----RPIDVFDGN---GGQMVCELHD 460 (498)
T ss_pred cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-----cceeEEcCC---CCEEeeeccC
Confidence 99999 99983 111111111222211 122234564 4466677554 347777663 3333333212
Q ss_pred CC-----ccEEEEecCCEEEE-EEcCCeEEEE
Q 001165 553 LA-----KPIVMDVYEDYILV-TYRPFDVHIF 578 (1134)
Q Consensus 553 ~~-----~~~~l~~~~d~llv-~~~d~~i~l~ 578 (1134)
|. .+..+.+.++.++. ..+.+.|.||
T Consensus 461 P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 461 PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccccccccceeecccccceeccCCccceEEEE
Confidence 21 24456777776666 4455566655
No 151
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=146.14 Aligned_cols=165 Identities=16% Similarity=0.196 Sum_probs=122.7
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC
Q 001165 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1134)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~ 221 (1134)
.+.++++++||.+.+++-.+.... ....|.+.|.+--|+|+|.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~-------------------------------------sv~AH~~A~~~gRW~~dGt 117 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVER-------------------------------------SISAHAAAISSGRWSPDGA 117 (737)
T ss_pred cceEEEEcCCceEEEecccchhhh-------------------------------------hhhhhhhhhhhcccCCCCc
Confidence 367899999999988765443211 1235778888889999999
Q ss_pred eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccC
Q 001165 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~ 301 (1134)
.+++++.||.+.+|+-++--. ..- .+....+.|++|.|+..-++. |..|.+.+=.+.
T Consensus 118 gLlt~GEDG~iKiWSrsGMLR----Stl---~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~--------------- 174 (737)
T KOG1524|consen 118 GLLTAGEDGVIKIWSRSGMLR----STV---VQNEESIRCARWAPNSNSIVF-CQGGHISIKPLA--------------- 174 (737)
T ss_pred eeeeecCCceEEEEeccchHH----HHH---hhcCceeEEEEECCCCCceEE-ecCCeEEEeecc---------------
Confidence 999999999999998764221 111 123467899999999988777 455667665555
Q ss_pred cceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 302 MREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 302 ~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
....+-..+. |.|-|.++.|+|....++||++|-..+|||-+|..++.+-. | ..+|++++|.|+.
T Consensus 175 ~n~k~i~WkA----HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~-~-ey~ITSva~npd~ 239 (737)
T KOG1524|consen 175 ANSKIIRWRA----HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA-E-EYAITSVAFNPEK 239 (737)
T ss_pred cccceeEEec----cCcEEEEeecCccccceeecCCceeEEeecccCcccccCCh-h-ccceeeeeecccc
Confidence 2222223333 99999999999999999999999999999999877665432 2 5688999888874
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.51 E-value=1.8e-10 Score=133.76 Aligned_cols=357 Identities=20% Similarity=0.265 Sum_probs=224.6
Q ss_pred EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEE-cCCce-EEEEEeC-CCEEEEEEEEe-c
Q 001165 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKVQI-T 99 (1134)
Q Consensus 25 v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-SPDg~-~Lav~t~-dg~l~lw~l~~-~ 99 (1134)
+.|++++..++.++ ++.+.+|+...+...+..+..... ..+..+.+ +|++. .++..+. ++.+.+|++.. .
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 67888898888776 789999999755312222221110 24555566 99998 5555455 88999999975 1
Q ss_pred CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeccccCCCccc
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~~~~~~~~~~~~~~~~~~ 178 (1134)
........+.. .....++.+++..++++.. ++.+..| +........
T Consensus 146 ~~~~~~~~~~~---------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------- 192 (466)
T COG2319 146 KLIRTLEGHSE---------------------SVTSLAFSPDGKLLASGSSLDGTIKLW--DLRTGKPLS---------- 192 (466)
T ss_pred eEEEEEecCcc---------------------cEEEEEECCCCCEEEecCCCCCceEEE--EcCCCceEE----------
Confidence 11111111110 1123456667776777764 8888764 433211110
Q ss_pred cccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCC
Q 001165 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG 257 (1134)
Q Consensus 179 i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~ 257 (1134)
...+|...|.+++|+|++. .++.+..||.+.+|+......... ... .+..
T Consensus 193 ------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~----~~~~ 243 (466)
T COG2319 193 ------------------------TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLS----GHSD 243 (466)
T ss_pred ------------------------eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-ecC----CCCc
Confidence 1234778899999999998 555558999999995542111110 011 1222
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
.. ...|+|++..+++++.|+.+++|+...... .+..+. .|...|.++.|+|++..+++++.
T Consensus 244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------------LLRTLS----GHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred ce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------------EEEEEe----cCCccEEEEEECCCCCEEEEeeC
Confidence 22 228999999999999999999999983221 122222 38899999999999999999999
Q ss_pred CCcEEEEecCCCeeEEEec--cCCCCceeeeEEcCCCCCCcceEEEc-c---eeEEEeCCCceEEEEecCCCc-cEEEEe
Q 001165 338 SRGLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG-T---SMMQWDEYGYRLYAIEEGSSE-RVLIFS 410 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~--~h~~~~V~sv~~sp~~~~~~~~l~sg-s---~i~~W~~~~~~l~~~~~~h~~-~v~~~s 410 (1134)
|+.+++|+..+........ .| ...+..+.+.+++ ..+..+ . .+.+|+............... ..+.+.
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDG----SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS 379 (466)
T ss_pred CCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCC----CEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEEC
Confidence 9899999998877666655 45 4468888883221 233333 2 566799877662222222221 113333
Q ss_pred cC-CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 411 FG-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 411 ~~-k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
+. .....+..++.+.+|+....... .....+...+....+++++.++++++.++.+ .|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 380 PDGRVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred CCCCEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 31 12223577889999986554331 1111221678999999999999999999999 99
Q ss_pred EccC
Q 001165 489 DIRQ 492 (1134)
Q Consensus 489 d~~s 492 (1134)
+..+
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9877
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.50 E-value=5.7e-13 Score=144.83 Aligned_cols=170 Identities=17% Similarity=0.261 Sum_probs=123.2
Q ss_pred CCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCc
Q 001165 315 DDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGY 393 (1134)
Q Consensus 315 ~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~ 393 (1134)
+|+++|..++|+| +.+.|||||+|.+|.||.+..+.+...+.
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------------- 121 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------------- 121 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-------------------------------------
Confidence 4999999999999 67799999999999999997654332221
Q ss_pred eEEEEecCCCccE--EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEE
Q 001165 394 RLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 469 (1134)
Q Consensus 394 ~l~~~~~~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va 469 (1134)
+.+..+.||+.+| ++.+| ...++|++.|.++.+|++.+++.- .+ +.|..-|.+++
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------i~-l~hpd~i~S~s 180 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------IT-LDHPDMVYSMS 180 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------ee-cCCCCeEEEEE
Confidence 1222334666665 56666 567789999999999999888762 12 23889999999
Q ss_pred EcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCc
Q 001165 470 ASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS 544 (1134)
Q Consensus 470 ~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~ 544 (1134)
|+.||.+++++++|..+ +||..+++.-.-+ ..||.. .-....|.++..+...-....++.++-+|+.++|..-
T Consensus 181 fn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~-k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 181 FNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGA-KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred eccCCceeeeecccceeEEEcCCCCcEeeec-ccccCC-CcceeEEeccCceeeeccccccccceeccCcccccCc
Confidence 99999999999999999 9999998644333 344442 2233566655444332244567788999988766653
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.2e-13 Score=167.76 Aligned_cols=253 Identities=17% Similarity=0.176 Sum_probs=182.7
Q ss_pred CcccEEEEEEcCCCCe----EEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEE
Q 001165 207 ISSAIIWLELCLPMRL----LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVE 281 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~----la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~ 281 (1134)
.....+.++|++.+.. +|.+..||.|.+|+...........+....-.|.+.|..+.||+.+. ++|+|..||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3456778888887765 88899999999999876421111111112224678899999999877 999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
|||+.+...... . ....-.+.|.+++|+. ..+.||+|+.+|.+.|||+...+.+-.+..++.
T Consensus 143 iWDlnn~~tP~~---------------~--~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 143 IWDLNKPETPFT---------------P--GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred EeccCCcCCCCC---------------C--CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC
Confidence 999985321110 0 0112456799999987 455889999999999999988876666655432
Q ss_pred -CceeeeEEcCCCCCCcceEEEcc----eeEEEeCCC-ceEEEEecCCCccEEEEec----CCEEEeeecCCcEEeeeee
Q 001165 361 -SSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 361 -~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~-~~l~~~~~~h~~~v~~~s~----~k~l~S~s~d~ti~~w~l~ 430 (1134)
..++.++|+|++.+. -.++++. .+.+||.+. .....+.++|+.+|+.+++ .+.++|.+.|+.+.+|+..
T Consensus 206 ~~~~S~l~WhP~~aTq-l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQ-LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred ccceeeeeeCCCCcee-eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 347899999998531 1233333 889999753 2344555789999988887 3678899999999999987
Q ss_pred eCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCC-EEEEEeCCCeE-EEEccCCcEEE
Q 001165 431 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRV 497 (1134)
Q Consensus 431 ~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~-~LAsgg~dG~i-lwd~~sg~Wk~ 497 (1134)
+++. ...+-.....++.+.|+|..- .+|+++-||.| +|++.+..|..
T Consensus 285 tgEv--------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 285 TGEV--------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred CceE--------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 7654 222323444588999998554 88999999999 99998876543
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.49 E-value=2.1e-12 Score=143.57 Aligned_cols=292 Identities=12% Similarity=0.186 Sum_probs=189.8
Q ss_pred EEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCC--EEEEEEEEecCcceecCCCCC
Q 001165 33 LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL--YLHIFKVQITEKSIQIGGKQP 110 (1134)
Q Consensus 33 llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg--~l~lw~l~~~~~~~~~~~~~~ 110 (1134)
+.++.+.++++|||+..-...-+....+. .+| +.++.|+.... |++++..| -+++|.-......+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~----~pg-~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~V------- 71 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTA----EPG-DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEV------- 71 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCC----CCc-ceeeeccccce-EEEeecCCceeEEEecccCCCCcc-------
Confidence 55666667799999963211111111111 234 67899988654 66666554 46666644321000
Q ss_pred CCcceeeEEEeeceeeccccccceEEEeeeC--CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCC
Q 001165 111 SGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (1134)
Q Consensus 111 ~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d--~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 188 (1134)
+.+ ++ .++. ...|+++. .-++++|...|.|.+|+...+...
T Consensus 72 -----p~~-----~k--~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h----------------------- 114 (673)
T KOG4378|consen 72 -----PRV-----RK--LTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH----------------------- 114 (673)
T ss_pred -----cee-----ec--cccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh-----------------------
Confidence 000 00 1111 11233222 356677777888887544322111
Q ss_pred ccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeE-EEEECCC
Q 001165 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPE 267 (1134)
Q Consensus 189 ~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~va~spd 267 (1134)
..+.+|++.|++|.|+-...++|+++..|.+.+..+........-++ +.+.++ -+.|||.
T Consensus 115 -------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~------~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 115 -------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI------DSGQSVRLLRYSPS 175 (673)
T ss_pred -------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec------CCCCeEEEeecccc
Confidence 13567889999999999999999999999988866643221111111 223444 7899997
Q ss_pred CC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEe
Q 001165 268 QQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWS 345 (1134)
Q Consensus 268 g~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWd 345 (1134)
.+ +|.+++.+|+|.+||+. ...++.. +...|..|...|+|||... .|++.+.|+.|.++|
T Consensus 176 kr~lL~~asd~G~VtlwDv~---------------g~sp~~~---~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQ---------------GMSPIFH---ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred cceeeEeeccCCeEEEEecc---------------CCCcccc---hhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 66 57789999999999998 2223222 3345999999999999554 778889999999999
Q ss_pred cCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC-ceEEEEecCCCccEEEEec--CCEEEe
Q 001165 346 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF--GKCCLN 417 (1134)
Q Consensus 346 v~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~-~~l~~~~~~h~~~v~~~s~--~k~l~S 417 (1134)
....+...++.- ..+.++++|+++| .+|+.|. .+..+|+++ ...+.+...|+..|.+++| .+.+++
T Consensus 238 ~~s~~s~~~l~y--~~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 238 IRSQASTDRLTY--SHPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVLT 309 (673)
T ss_pred cccccccceeee--cCCcceeeecCCc----eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceeee
Confidence 988777777654 4488999999999 7887776 888999876 4557777788888855444 544443
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.3e-12 Score=148.46 Aligned_cols=323 Identities=14% Similarity=0.103 Sum_probs=187.0
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
|.|.++++.-.|-|..||+|+.||+|+||.+.++..-.... ....+.+++|.+...+ +|.+++-.+..+
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~-------~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDL-------CVLAVAVGECVL 467 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCc-------eeEEEEecCceE
Confidence 45778999999999999999999999999998763211111 0113456666654422 222332222222
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcc-cccccCCCcccEEEEEEcCCCCeEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF-VSDHKFPISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~-~~~~~~~~~~~V~~i~fsp~~~~la 224 (1134)
++-..=|+-.. .+.+...+. ..|........+..|..... .... .-.....+...|.+|+|+..|++|+
T Consensus 468 ivnp~~G~~~e---~~~t~ell~--~~~~~~~p~~~~~~W~~~~~-----~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 468 IVNPIFGDRLE---VGPTKELLA--SAPNESEPDAAVVTWSRASL-----DELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred EeCccccchhh---hcchhhhhh--cCCCccCCcccceeechhhh-----hhhccceEEEEecCCccceeeeecCCceEE
Confidence 22221110000 000000000 00000000001111111100 0000 0012345778899999999999999
Q ss_pred EEEcCC---eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccC
Q 001165 225 VLYSNG---QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1134)
Q Consensus 225 ~~~sDG---~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~ 301 (1134)
++..+| .|.+.++++......-. ...+.+.++.|+|...++.++++ ..|++||+.
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~------kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~--------------- 595 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFR------KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS--------------- 595 (733)
T ss_pred EeccCCCcceEEEEecccccccCchh------hcCCceeEEEecCCCceEEEEec-cceEEEehh---------------
Confidence 998764 36666665433221110 11266789999999998888775 479999998
Q ss_pred cceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC-CCeeEEEeccCCCCceeeeEEcCCCCCCcceEE
Q 001165 302 MREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 302 ~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
.+++.+.+.. -...|.+++.+|.|.-|+.|+.|+.+..+|+. +.+..++++.| ...|.+++|++.- ..++
T Consensus 596 kqelvKkL~t----g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ry----PLfa 666 (733)
T KOG0650|consen 596 KQELVKKLLT----GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRY----PLFA 666 (733)
T ss_pred HHHHHHHHhc----CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhcccc----ceee
Confidence 3433333322 35578999999999999999999999999985 34567777766 6778888887654 4444
Q ss_pred EcceeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc-eeec
Q 001165 381 SGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYI 459 (1134)
Q Consensus 381 sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~-~~~~ 459 (1134)
+ ++.|+++.++.-.--.+ +.-.+.-+| ..+.
T Consensus 667 s------------------------------------~sdDgtv~Vfhg~VY~D------------l~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 667 S------------------------------------GSDDGTVIVFHGMVYND------------LLQNPLIVPLKRLR 698 (733)
T ss_pred e------------------------------------ecCCCcEEEEeeeeehh------------hhcCCceEeeeecc
Confidence 4 34444444332110000 000001112 2344
Q ss_pred cCCC----ceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 460 SQNW----PVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 460 ~h~~----~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
+|.. .|..+.|.|.--+|.+||.||+| +|
T Consensus 699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 5543 48899999999999999999999 88
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.48 E-value=3.9e-12 Score=140.97 Aligned_cols=282 Identities=13% Similarity=0.156 Sum_probs=182.5
Q ss_pred hcceeEEEEcCCc--eEEEEEeCCCEEEEEEEEec---CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEe--e
Q 001165 67 EGENLQAVWSPDT--KLIAVVTSSLYLHIFKVQIT---EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V 139 (1134)
Q Consensus 67 ~G~~~~v~wSPDg--~~Lav~t~dg~l~lw~l~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~--s 139 (1134)
.|.+++++|-|-- +++|+|...|.|-+||+.+. ...++. +..+.++|.++ +
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~----------------------f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL----------------------FTPHSGPVSGLKFS 243 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE----------------------eccCCccccceEec
Confidence 5678999999954 47888999999999999522 122222 11222334333 2
Q ss_pred e-CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC
Q 001165 140 S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (1134)
Q Consensus 140 ~-d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp 218 (1134)
| +...+++.+.||+++..+.++.....+ . .+......+.++.|+.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v-----------~-----------------------s~~~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEV-----------L-----------------------SLDTDNIWFSSLDFSA 289 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHH-----------h-----------------------hcCccceeeeeccccC
Confidence 2 346789999999999876654321111 0 0112234566788888
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeee
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSL 297 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l 297 (1134)
+...++++..=|...+|+........ +. ...+...|+.+++||... ++|+|+.|++.+|||+..-....
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~----~~-~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~----- 359 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEY----EN-LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA----- 359 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccc----hh-hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----
Confidence 88888888877877777775433211 00 012446899999999665 69999999999999998432111
Q ss_pred eccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC----CCeeEEEeccCCC--C--ceeeeEEc
Q 001165 298 YDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISL--S--SISSPIVK 369 (1134)
Q Consensus 298 ~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~----~~~l~~tl~~h~~--~--~V~sv~~s 369 (1134)
+. .+ ....|+.+|.+..|||+|-.|++.+.|..|+|||.. .-.+.+++...+. . .....+|.
T Consensus 360 ----sp-~l-----st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 360 ----SP-FL-----STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWD 429 (498)
T ss_pred ----Cc-ce-----ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeC
Confidence 00 12 222499999999999988889999999999999983 2233444432111 1 23346688
Q ss_pred CCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCC----ccEEEEec-CCEEEee-ecCCcEEeee
Q 001165 370 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS----ERVLIFSF-GKCCLNR-GVSGMTYARQ 428 (1134)
Q Consensus 370 p~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~----~~v~~~s~-~k~l~S~-s~d~ti~~w~ 428 (1134)
|+. ..++.|- .|-+++.+++++++.+.+.. ..+..++| ...+++| +..|.+++|.
T Consensus 430 P~~----~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 430 PDY----NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred CCc----cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 876 7777665 78899999999877753322 23477888 4435554 4456666553
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3e-13 Score=164.51 Aligned_cols=201 Identities=14% Similarity=0.191 Sum_probs=147.0
Q ss_pred cCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC-CEEEEeeeCCeEE
Q 001165 204 KFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGVVE 281 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~V~ 281 (1134)
...|.+.|..++|++..+ .+|++.+||.|.+|++++......-+-. ...++|.|++||.+- ..||+|+.+|.+.
T Consensus 112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~----~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ----APPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC----CCcccceEeccchhhhHHhhccCCCCCce
Confidence 457899999999999875 9999999999999999863321111110 124789999999965 4799999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCC--cCeEEEEECCCCC-EEEEEECC---CcEEEEecCC-CeeEEE
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT--GPVSCIAWTPDNS-AFAVGWKS---RGLTVWSVSG-CRLMST 354 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~--g~V~~l~fSPDG~-~Lasg~~D---g~I~vWdv~~-~~l~~t 354 (1134)
|||++. .+.+-.+.. |. ..+..|+|+||+. .|+++++| -.|.+||+.. ...+++
T Consensus 188 iWDlr~---------------~~pii~ls~----~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 188 IWDLRK---------------KKPIIKLSD----TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred eccccC---------------CCccccccc----CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 999993 222222221 32 3578999999876 67777655 3699999753 345667
Q ss_pred eccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec----CCEEEeeecCCcEEee
Q 001165 355 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYAR 427 (1134)
Q Consensus 355 l~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~----~k~l~S~s~d~ti~~w 427 (1134)
+++| ..+|.++.|++.++ ++++|++ ++++|++++++.+..+....+.++.++| -..++..+.||.|.+.
T Consensus 249 ~~~H-~~GilslsWc~~D~---~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 249 LEGH-QRGILSLSWCPQDP---RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hccc-ccceeeeccCCCCc---hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 7666 78999999998763 5666655 8999999999998877655555644444 2256678899999887
Q ss_pred eeee
Q 001165 428 QVIY 431 (1134)
Q Consensus 428 ~l~~ 431 (1134)
.+..
T Consensus 325 sl~~ 328 (1049)
T KOG0307|consen 325 SLQG 328 (1049)
T ss_pred eeec
Confidence 7543
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=148.71 Aligned_cols=263 Identities=17% Similarity=0.233 Sum_probs=183.1
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..+..++|-|||..++.+. +..+.+||.. .|..+.++++ |+..|+||+||.||+++|||+
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~n---------------dG~llqtLKg----HKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTS---------------DGTLLQPLKG----HKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCC---------------Cccccccccc----ccceEEEEEEccCCceeccCC
Confidence 3566899999999877754 4578999999 7888888888 999999999999999999999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecCCCccEEEEec---
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF--- 411 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~--- 411 (1134)
.|..|.+|+-. +--+++-.|.+.|.++.|+|-. ..++|++ .--+|+++....... ....++..-++
T Consensus 73 aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 73 ADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTND 143 (1081)
T ss_pred CceeEEEeccc---ccceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCC
Confidence 99999999763 3334444347889999999987 7888877 667898865432211 12345555555
Q ss_pred CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCC-----CEEEEEeCCCeE
Q 001165 412 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI 486 (1134)
Q Consensus 412 ~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG-----~~LAsgg~dG~i 486 (1134)
|+.++-|-.+|||.+.+ ..++.++. ...--|.|.||++++|+|.. ..+|++.-..+.
T Consensus 144 GqylalG~~nGTIsiRN-k~gEek~~-----------------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRN-KNGEEKVK-----------------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred CcEEEEeccCceEEeec-CCCCcceE-----------------EeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 88899999999999986 34444332 12234789999999999863 467777777777
Q ss_pred -EEEccCCcEEEeCC-ccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC--CCC----CcceeEEEecCCccEE
Q 001165 487 -LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLD----QSSLLCRKSLLAKPIV 558 (1134)
Q Consensus 487 -lwd~~sg~Wk~F~~-~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~--~ld----~~~~~~~~~l~~~~~~ 558 (1134)
.|.+... ..+. ..-+-+-.|..-+-.+.++++| +.+..+.+|.|+ .|. .+.-+|+. .
T Consensus 206 SFy~LsG~---~Igk~r~L~FdP~CisYf~NGEy~LiG-----Gsdk~L~~fTR~GvrLGTvg~~D~WIWtV-------~ 270 (1081)
T KOG1538|consen 206 SFYQLSGK---QIGKDRALNFDPCCISYFTNGEYILLG-----GSDKQLSLFTRDGVRLGTVGEQDSWIWTV-------Q 270 (1081)
T ss_pred EEEEecce---eecccccCCCCchhheeccCCcEEEEc-----cCCCceEEEeecCeEEeeccccceeEEEE-------E
Confidence 6665442 2221 1111111244555567888887 556789999986 221 11223433 2
Q ss_pred EEecCCEEEEEEcCCeEEEEEEE
Q 001165 559 MDVYEDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 559 l~~~~d~llv~~~d~~i~l~~~~ 581 (1134)
+.+.+.+..+.|.||+|..|.+.
T Consensus 271 ~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 271 AKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EccCCceEEEEEccCeeehhhhH
Confidence 34455667778888888888654
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.46 E-value=2.4e-10 Score=132.64 Aligned_cols=283 Identities=20% Similarity=0.248 Sum_probs=201.5
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEE-CCCCC-EEEEeee-CCeE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI-APEQQ-ILAVGTR-RGVV 280 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~-spdg~-llAsG~~-dg~V 280 (1134)
...+...+..+.|.+.+..++....|+.+.+|+...... ....+.. .....+..+.+ ++++. .++..+. |+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK-LIKSLEG---LHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce-eEEEEec---cCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 446788899999999999999999999999999865430 1111111 00024555555 88888 5554444 9999
Q ss_pred EEEeccccccceeeeeeeccCc-ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CCcEEEEecCCCeeEEEeccC
Q 001165 281 ELYDLAESASLIRTVSLYDWGM-REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQI 358 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~-~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg~I~vWdv~~~~l~~tl~~h 358 (1134)
++|+.. . ......+.+ |...|.+++|+|++..+++++. |+.+++|++..+....++.+|
T Consensus 137 ~~~~~~---------------~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 137 KLWDLS---------------TPGKLIRTLEG----HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred EEEEec---------------CCCeEEEEEec----CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 999998 3 444555555 9999999999999999999985 999999999987888888886
Q ss_pred CCCceeeeEEcCCCCCCcc-eEEEcc---eeEEEeCCCceEEE-EecCCCcc-EEEEec-CCEEEeeecCCcEEeeeeee
Q 001165 359 SLSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYA-IEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~-~l~sgs---~i~~W~~~~~~l~~-~~~~h~~~-v~~~s~-~k~l~S~s~d~ti~~w~l~~ 431 (1134)
...|.+++++|++ . .+++++ ++.+|+...+.... ...+|... +..|++ +..+++++.|+.+++|+...
T Consensus 198 -~~~v~~~~~~~~~----~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 198 -TDPVSSLAFSPDG----GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred -CCceEEEEEcCCc----ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecC
Confidence 7889999999887 4 445423 78899988777777 57777666 446777 66888999999999999765
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCC-ccceeeeEE
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQS 509 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~-~~~e~~~~v 509 (1134)
.... ...+.+|..+|.++.|+|++..+++++.|+.+ +|+..+........ ..++. .+
T Consensus 273 ~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~ 331 (466)
T COG2319 273 SSSL-------------------LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PV 331 (466)
T ss_pred CCcE-------------------EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ce
Confidence 4431 11225678899999999999999999999888 99988775332221 12222 34
Q ss_pred EEEEeeC--CEEEEEEEecCCCeeEEEEEeCC
Q 001165 510 KGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 510 ~gl~W~~--~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
..+.|.. ..++.+. ..+..+++|+..
T Consensus 332 ~~~~~~~~~~~~~~~~----~~d~~~~~~~~~ 359 (466)
T COG2319 332 SSLSFSPDGSLLVSGG----SDDGTIRLWDLR 359 (466)
T ss_pred EEEEECCCCCEEEEee----cCCCcEEeeecC
Confidence 4555522 2344432 122556667664
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.46 E-value=5.6e-13 Score=151.23 Aligned_cols=205 Identities=21% Similarity=0.326 Sum_probs=141.2
Q ss_pred ECCCCCEEEE--eeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCc
Q 001165 264 IAPEQQILAV--GTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 340 (1134)
Q Consensus 264 ~spdg~llAs--G~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~ 340 (1134)
|+.+...+|+ .+..|.|-||++...+...- |. +..+ .....|+.+.|.| |..+||+|++||.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD---------gv-~p~l-----~Ngt~vtDl~WdPFD~~rLAVa~ddg~ 651 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD---------GV-MPGL-----FNGTLVTDLHWDPFDDERLAVATDDGQ 651 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc---------cc-cccc-----ccCceeeecccCCCChHHeeecccCce
Confidence 4445556665 45678999999986553321 11 1111 1345699999999 8889999999999
Q ss_pred EEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccE--EEEec--CCEEE
Q 001165 341 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF--GKCCL 416 (1134)
Q Consensus 341 I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v--~~~s~--~k~l~ 416 (1134)
|++|.+..+-+-... ..| +. ++.+|.+.| +.|+| ...++
T Consensus 652 i~lWr~~a~gl~e~~------------~tP------e~-------------------~lt~h~eKI~slRfHPLAadvLa 694 (1012)
T KOG1445|consen 652 INLWRLTANGLPENE------------MTP------EK-------------------ILTIHGEKITSLRFHPLAADVLA 694 (1012)
T ss_pred EEEEEeccCCCCccc------------CCc------ce-------------------eeecccceEEEEEecchhhhHhh
Confidence 999998654211000 001 11 123455666 44555 67788
Q ss_pred eeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE
Q 001165 417 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 417 S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W 495 (1134)
+++.|.||++||+..+.+ -..+.+|...|..+||||||+.+|+.+.||.+ +|+..++.-
T Consensus 695 ~asyd~Ti~lWDl~~~~~--------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAKL--------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hhhccceeeeeehhhhhh--------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 999999999999987776 35678999999999999999999999999999 999988753
Q ss_pred EEeCCccceeeeEEE----EEEee--CCEEEEEEEecCCCeeEEEEEeCCCCCCcce
Q 001165 496 RVFGDITQEQKIQSK----GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSL 546 (1134)
Q Consensus 496 k~F~~~~~e~~~~v~----gl~W~--~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~ 546 (1134)
.. +|....+. .+.|- ++++|+.++ +...+.+|.+|+.+.++-..+
T Consensus 755 pv-----~Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 755 PV-----YEGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred cc-----ccCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccCCcc
Confidence 32 33333322 36774 555555444 346778999999987775443
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=142.07 Aligned_cols=198 Identities=16% Similarity=0.243 Sum_probs=146.8
Q ss_pred CEEEEeeeCCeEEEEeccccccceee--eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEe
Q 001165 269 QILAVGTRRGVVELYDLAESASLIRT--VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWS 345 (1134)
Q Consensus 269 ~llAsG~~dg~V~lwd~~~~~~~~~~--l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWd 345 (1134)
.+.|+=+..|.|+||++......... +.... ...++++++.+ |.+.=+.++|||--. .|+||..-+.|.+|.
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~-s~~~Pl~t~~g----hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~ 240 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKD-SEFRPLFTFNG----HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWE 240 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccc-cccCceEEecc----cCccceeeecccccccccccCccccceEeee
Confidence 34555566789999999853311110 00000 13457888887 999999999999333 578888889999999
Q ss_pred cCCCeeE---EEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc---eEEEEecCCCccEEEEec---CC
Q 001165 346 VSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RLYAIEEGSSERVLIFSF---GK 413 (1134)
Q Consensus 346 v~~~~l~---~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~---~l~~~~~~h~~~v~~~s~---~k 413 (1134)
..++.-. ..+.+| +..|-.+++||... ..++||+ ++++||.+.+ .++.+ +.|.+.|.++++ ..
T Consensus 241 ~~~g~W~vd~~Pf~gH-~~SVEDLqWSptE~---~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 241 PSTGSWKVDQRPFTGH-TKSVEDLQWSPTED---GVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREP 315 (440)
T ss_pred eccCceeecCcccccc-ccchhhhccCCccC---ceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcc
Confidence 8775422 234455 78899999999863 5678877 9999999887 34444 788889988888 33
Q ss_pred EEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcC-CCCEEEEEeCCCeE-EEEcc
Q 001165 414 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 414 ~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp-dG~~LAsgg~dG~i-lwd~~ 491 (1134)
.+++|+.||+.++||+.+-... +...+|.-|..||+++.|+| +...+|++|.|..+ +||+.
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~-----------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSG-----------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eeeecCCCceEEEEEhhhccCC-----------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 6899999999999998764431 22468899999999999998 45678888899999 99996
Q ss_pred CC
Q 001165 492 QK 493 (1134)
Q Consensus 492 sg 493 (1134)
..
T Consensus 379 vE 380 (440)
T KOG0302|consen 379 VE 380 (440)
T ss_pred cc
Confidence 54
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.45 E-value=3.5e-12 Score=136.11 Aligned_cols=252 Identities=13% Similarity=0.141 Sum_probs=172.2
Q ss_pred ccCCCcccEEEEEEcCCC-----CeEEEEEcCCeEEEEEeccCC-ccccceecccccCCCCCeEEEEECCC----CCEEE
Q 001165 203 HKFPISSAIIWLELCLPM-----RLLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKELGSGDAVCASIAPE----QQILA 272 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~-----~~la~~~sDG~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~va~spd----g~llA 272 (1134)
...+++.+|..++|++.. +.+|+++ ..++.++...... ....+....+ .+.+.-..++|+-+ ..++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~--d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADE--DHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCC--CCCcceEEEEEEecCCCCCeeEE
Confidence 345677889999998542 3444443 3356666654432 1111111110 11234455666553 45799
Q ss_pred EeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CEEEEEECCCcEEEEecCCCee
Q 001165 273 VGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRL 351 (1134)
Q Consensus 273 sG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~Lasg~~Dg~I~vWdv~~~~l 351 (1134)
+|+.-|.|+|.|+. +++....+.+ |.+.|+.+.|.|+. +++.+|+.|.+||+|++.+..+
T Consensus 110 ~~G~~GvIrVid~~---------------~~~~~~~~~g----hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVV---------------SGQCSKNYRG----HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred eecceeEEEEEecc---------------hhhhccceec----cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence 99999999999998 7777777777 99999999999965 6899999999999999999999
Q ss_pred EEEecc--CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEE----------------------------E
Q 001165 352 MSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA----------------------------I 398 (1134)
Q Consensus 352 ~~tl~~--h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~----------------------------~ 398 (1134)
++.+.| .|.+.|-++.|++++ +.++|++ ++++|++...+... +
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred EEEecccccccCcEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999876 347899999999999 8899987 99999987432211 1
Q ss_pred ecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc-------eeeccCCCceEEE--
Q 001165 399 EEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-------VSYISQNWPVQHV-- 468 (1134)
Q Consensus 399 ~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~-------~~~~~h~~~V~~v-- 468 (1134)
..-|.+.|-+..+ |..++|-|.++.|..|-.-+-++. |+.++.| .++.-.+..|+.+
T Consensus 247 ~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~-------------~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEES-------------IHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccchHHHHHHHhhheeecccCceEEEEecchhhhh-------------hhccCCCccceeeeeEeccCccceEEEEE
Confidence 1123333433334 777888888889999975332221 2222111 1233334445555
Q ss_pred EEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 469 AASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 469 a~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
+|+|-++.||.|+..|.+ +||+...
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCC
Confidence 457889999999999999 9999765
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=8.8e-12 Score=136.50 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=123.4
Q ss_pred CcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccc-eecc--cccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 207 ISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAE-FIKI--DKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~-~~~~--~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
...+|.++.|.+... .+++++.|..+.+|.++...+.... .+.. .--.|...+++|.|+|+|.++|+|+++|+|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 457788999988875 9999999999999999765543311 1110 00124578899999999999999999999999
Q ss_pred Eeccccccc-eee-eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 283 YDLAESASL-IRT-VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 283 wd~~~~~~~-~~~-l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
|...+..-. ..+ ..+. .+.-...+.+.+ |...|..++|+||+.++++|+-|.++++||+..+++.+.+.+| .
T Consensus 92 Wk~~~~~~~~~d~e~~~~-ke~w~v~k~lr~----h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~ 165 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLN-KEKWVVKKVLRG----HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-E 165 (434)
T ss_pred EEecCcCCccccchhhhC-ccceEEEEEecc----cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-c
Confidence 998741110 000 0000 001223444455 9999999999999999999999999999999999999999887 6
Q ss_pred CceeeeEEcCCCCCCcceEEEc
Q 001165 361 SSISSPIVKPNQDCKYEPLMSG 382 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sg 382 (1134)
..|..+++.|-+ +++++-
T Consensus 166 ~yvqgvawDpl~----qyv~s~ 183 (434)
T KOG1009|consen 166 HYVQGVAWDPLN----QYVASK 183 (434)
T ss_pred cccceeecchhh----hhhhhh
Confidence 789999998876 555543
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=2.6e-12 Score=141.97 Aligned_cols=200 Identities=14% Similarity=0.192 Sum_probs=142.3
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceE--EEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEE
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREV--YYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTV 343 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~--l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~v 343 (1134)
.|+++|+|+.|..|.|||++=.......+.|-...+.+. ...-.....+|+..|.+++|.-+-+ .|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 477999999999999999972111111111110000000 0000001235999999999988654 8999999999999
Q ss_pred EecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC----ceEEEEecCCCccE--EEEec--C
Q 001165 344 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERV--LIFSF--G 412 (1134)
Q Consensus 344 Wdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~----~~l~~~~~~h~~~v--~~~s~--~ 412 (1134)
||+.++++..++..| ...|+++.|+|..+ ..+++|+ ++.+.|.+. +.-|.. .+.| +...+ -
T Consensus 271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKF----DGEVEKVAWDPHSE 342 (463)
T ss_pred EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEe----ccceEEEEecCCCc
Confidence 999999999999855 77999999999864 6788888 888888762 233333 2223 44444 4
Q ss_pred CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC-CCEEEEEeCCCeE-EEEc
Q 001165 413 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 413 k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd-G~~LAsgg~dG~i-lwd~ 490 (1134)
..++.+..||+++-.|+++.+.. .-+...|+.+|.++++++. -.+++++|.|+.+ +|++
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~-------------------vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKP-------------------VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCc-------------------eeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 45667789999999998876652 3467899999999999864 4578999999999 9998
Q ss_pred cCC
Q 001165 491 RQK 493 (1134)
Q Consensus 491 ~sg 493 (1134)
...
T Consensus 404 ~~~ 406 (463)
T KOG0270|consen 404 DVD 406 (463)
T ss_pred cCC
Confidence 643
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.42 E-value=2.8e-11 Score=128.86 Aligned_cols=272 Identities=15% Similarity=0.201 Sum_probs=179.6
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc-------cceecccccCCCCCeEEEEE-------CCCCCEEEEe
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-------AEFIKIDKELGSGDAVCASI-------APEQQILAVG 274 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~va~-------spdg~llAsG 274 (1134)
......-|||||..+.+.+.|..+.+|++....... ...+...+......+...+| -|+-.++|+.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 345567899999999999999999999985321100 00011111112233444444 3677899999
Q ss_pred eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcC---eEEEEECCCCCEEEEEECCCcEEEEecC-CCe
Q 001165 275 TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGP---VSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCR 350 (1134)
Q Consensus 275 ~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~---V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~ 350 (1134)
+.+.-|++||.- +|++...+.++ .|... -.+++|||||..|.+|.. +.|+|+|+. .++
T Consensus 130 sr~~PIh~wdaf---------------tG~lraSy~~y--dh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr 191 (406)
T KOG2919|consen 130 SRDQPIHLWDAF---------------TGKLRASYRAY--DHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGR 191 (406)
T ss_pred cccCceeeeecc---------------ccccccchhhh--hhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCC
Confidence 999999999987 55554444332 24443 468999999999998876 799999993 332
Q ss_pred ---eEEEecc---CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec---CCEEEee
Q 001165 351 ---LMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNR 418 (1134)
Q Consensus 351 ---l~~tl~~---h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~ 418 (1134)
...++.. ...+-+++.+|+|.+. ..++.|+ ++-++...+.+.+.+..+|.++|..+.+ |..+.+|
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~---~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDS---KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCC---cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 2233221 1134578899999862 3566666 6667777778888888899999955444 8888887
Q ss_pred ec-CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeecc-CCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC-Cc
Q 001165 419 GV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KK 494 (1134)
Q Consensus 419 s~-d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~-h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s-g~ 494 (1134)
.. |-.|..||+.+..+-++... .-.+ .|-.| ...+.|+|++||+|+.||.| +||..+ |.
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~----------------rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALE----------------RHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhh----------------hhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 65 66789999988766321111 1112 33344 56678999999999999999 999977 54
Q ss_pred EE-EeCCccceeeeEEEEEEeeCCEEEEE
Q 001165 495 WR-VFGDITQEQKIQSKGLLWLGKIIVVC 522 (1134)
Q Consensus 495 Wk-~F~~~~~e~~~~v~gl~W~~~~lv~~ 522 (1134)
|. .+++ .+-.|.++.-.+-.-|.|
T Consensus 332 ~~sv~~~----~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 332 EVSVTGN----YSDTVNGVSLNPIMPILA 356 (406)
T ss_pred ccccccc----ccccccceecCcccceee
Confidence 33 2222 223456777766654444
No 167
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.4e-10 Score=136.35 Aligned_cols=360 Identities=17% Similarity=0.146 Sum_probs=219.2
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcc
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~ 102 (1134)
.++.+++-|...+.+....+.+|+...+....+.+.++ ..|.-..+++++||.++++|++-.||.|++|.=-...
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~---~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-- 238 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT---VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-- 238 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh---hhhcccceeEEeccccceEEEeccCCcEEEEeccccc--
Confidence 44667888999888899999999997544333333222 2222235889999999999999999999999853310
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i 182 (1134)
........+.|..++ ..+.+|+++|.++++|...|.+.+|. .++..+.
T Consensus 239 -------~~~~t~t~lHWH~~~--------V~~L~fS~~G~~LlSGG~E~VLv~Wq--~~T~~kq--------------- 286 (792)
T KOG1963|consen 239 -------DDSETCTLLHWHHDE--------VNSLSFSSDGAYLLSGGREGVLVLWQ--LETGKKQ--------------- 286 (792)
T ss_pred -------cccccceEEEecccc--------cceeEEecCCceEeecccceEEEEEe--ecCCCcc---------------
Confidence 011122445565443 34678899999999999999887654 3333321
Q ss_pred cccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc-ccceeccc----ccCCCC
Q 001165 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKID----KELGSG 257 (1134)
Q Consensus 183 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~-~~~~~~~~----~~~~~~ 257 (1134)
.+..-+++|..+.+|||++..++...|..+.+.....-..+ ..+++.+. +-...+
T Consensus 287 --------------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 287 --------------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred --------------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 12234688999999999999999999999999877543221 11222211 000123
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
=.+.++++|.-+.++..+..|.|.+||+-+.... ..+...+.. ... ....+.-.++.++.+-.|+.++|+-.
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n------~~~-~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDEN------YSD-GDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEEeec------ccC-CcceeEEeeeeehhhccceEEEEeee
Confidence 3567899998888999999999999999743321 111111100 000 00013445788888888888887632
Q ss_pred CCcEEEEe-cCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCC----ceEEE-EecCCCccE--EEE
Q 001165 338 SRGLTVWS-VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG----YRLYA-IEEGSSERV--LIF 409 (1134)
Q Consensus 338 Dg~I~vWd-v~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~----~~l~~-~~~~h~~~v--~~~ 409 (1134)
|. ..+ + . ++ + ...++|--+. ..|.. +...|...+ .++
T Consensus 419 ------~~d~~~---------~-~----------~~----e-----~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~ 463 (792)
T KOG1963|consen 419 ------RIDKFN---------F-F----------DG----E-----VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIF 463 (792)
T ss_pred ------eehhhh---------c-c----------Cc----e-----EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEE
Confidence 20 000 0 0 00 0 1345554322 22221 223555554 222
Q ss_pred -ec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001165 410 -SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 410 -s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
++ ...++|++.||.+++|-+...++ ++ .....|.-.. ...| |+.|+..++||.||..||+|- ++.+
T Consensus 464 ~~~~rs~~~vta~~dg~~KiW~~~~~~n-~~------k~~s~W~c~~-i~sy--~k~~i~a~~fs~dGslla~s~-~~~I 532 (792)
T KOG1963|consen 464 LNPTRSVRCVTASVDGDFKIWVFTDDSN-IY------KKSSNWTCKA-IGSY--HKTPITALCFSQDGSLLAVSF-DDTI 532 (792)
T ss_pred ecCcccceeEEeccCCeEEEEEEecccc-cC------cCccceEEee-eecc--ccCcccchhhcCCCcEEEEec-CCEE
Confidence 22 22678999999999998632221 10 0001242111 1224 788999999999998877655 5566
Q ss_pred -EEEccCC
Q 001165 487 -LYDIRQK 493 (1134)
Q Consensus 487 -lwd~~sg 493 (1134)
+||..+.
T Consensus 533 tiwd~~~~ 540 (792)
T KOG1963|consen 533 TIWDYDTK 540 (792)
T ss_pred EEecCCCh
Confidence 9998774
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=5.6e-12 Score=139.44 Aligned_cols=230 Identities=11% Similarity=0.098 Sum_probs=161.1
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccc----cceecc------cc-----cCCCCCeEEEEECCCCC-EEEEeeeCCeEEE
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKL----AEFIKI------DK-----ELGSGDAVCASIAPEQQ-ILAVGTRRGVVEL 282 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~----~~~~~~------~~-----~~~~~~~~~va~spdg~-llAsG~~dg~V~l 282 (1134)
.||++|+|+-|-.|.+|++.-..... ...... .+ -.|...+..++||-..+ .||+|+.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46899999999999999986422110 000000 00 01223344778887655 7999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCe-eEEEeccCCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISL 360 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~-l~~tl~~h~~ 360 (1134)
||++ +|++..++.. |.+.|.+++|.| .+..|.+|+.|++|++.|..... .-..++- .
T Consensus 271 WD~~---------------~g~p~~s~~~----~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~ 329 (463)
T KOG0270|consen 271 WDVD---------------TGKPKSSITH----HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--D 329 (463)
T ss_pred EEcC---------------CCCcceehhh----cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--c
Confidence 9999 8888888776 999999999999 67799999999999999987321 1111211 4
Q ss_pred CceeeeEEcCCCCCCcceEEEc---ceeEEEeCCCc-eEEEEecCCCccEEEEec----CCEEEeeecCCcEEeeeeeeC
Q 001165 361 SSISSPIVKPNQDCKYEPLMSG---TSMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sg---s~i~~W~~~~~-~l~~~~~~h~~~v~~~s~----~k~l~S~s~d~ti~~w~l~~~ 432 (1134)
+.|-.++|.|..+ ..+..+ ++++-+|.+.. +++...+.|.+.|..++. -..++|++.|+++++|++...
T Consensus 330 g~VEkv~w~~~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 330 GEVEKVAWDPHSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred cceEEEEecCCCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 5688899988763 233444 38888898764 788888899999944444 346789999999999997544
Q ss_pred CCeEEEeecCCCccccccccccceeeccCCC---ceEEEEEcCCC-CEEEEEeCCCeE-EEEccCC
Q 001165 433 EDRLLVVQSEDTDELKILHLNLPVSYISQNW---PVQHVAASKDG-MFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 433 ~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~---~V~~va~SpdG-~~LAsgg~dG~i-lwd~~sg 493 (1134)
+.+ .-..|.- ...|.++.|+- -++|.||..+.+ +||+.+.
T Consensus 407 ~~~---------------------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 407 SPK---------------------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCc---------------------ccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 332 1112221 24566667753 477888999977 9998765
No 169
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.5e-11 Score=146.89 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=148.5
Q ss_pred CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC---CEEEEEEEEecCcceecCCCCCCCccee
Q 001165 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1134)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~lw~l~~~~~~~~~~~~~~~~~~~~ 116 (1134)
..|.|||.+....+ ... .+.+.+...+|||||+.||.++.+ ..|.+|++..+.......
T Consensus 184 ~~i~i~d~dg~~~~--~lt------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~---------- 245 (429)
T PRK01742 184 YEVRVADYDGFNQF--IVN------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS---------- 245 (429)
T ss_pred EEEEEECCCCCCce--Eec------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------
Confidence 58999999733211 111 123457889999999999988754 368999986532111110
Q ss_pred eEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccC
Q 001165 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1134)
Q Consensus 117 s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~ 195 (1134)
+.+.. ...++++||+.|+++. .+|...+|.|+.......
T Consensus 246 -----------~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~---------------------------- 285 (429)
T PRK01742 246 -----------FRGHN-GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS---------------------------- 285 (429)
T ss_pred -----------CCCcc-CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE----------------------------
Confidence 00001 1236788898888765 577777776764322111
Q ss_pred CCcccccccCCCcccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe
Q 001165 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG 274 (1134)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG 274 (1134)
.++.+...+.+..|+|+|+.++.++ .+|...+|.++...... ..+. + .. .+.+|+|||+.|+++
T Consensus 286 -------~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~-----~-~~-~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 286 -------QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVG-----G-RG-YSAQISADGKTLVMI 350 (429)
T ss_pred -------eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEec-----C-CC-CCccCCCCCCEEEEE
Confidence 1222344566789999999877665 46777887765322111 1110 1 11 457899999999988
Q ss_pred eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC--CCeeE
Q 001165 275 TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLM 352 (1134)
Q Consensus 275 ~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~--~~~l~ 352 (1134)
+.++.+ +||+. +++....... + ...+++|+|||+.|+.++.+|+..+|.+. .+...
T Consensus 351 ~~~~i~-~~Dl~---------------~g~~~~lt~~----~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 351 NGDNVV-KQDLT---------------SGSTEVLSST----F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred cCCCEE-EEECC---------------CCCeEEecCC----C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 876644 58887 3332211111 1 23567899999999999999999888763 45667
Q ss_pred EEeccCCCCceeeeEEcCC
Q 001165 353 STIRQISLSSISSPIVKPN 371 (1134)
Q Consensus 353 ~tl~~h~~~~V~sv~~sp~ 371 (1134)
..+.+| .+.+..++|+|-
T Consensus 409 ~~l~~~-~g~~~~p~wsp~ 426 (429)
T PRK01742 409 ARLPGS-DGQVKFPAWSPY 426 (429)
T ss_pred EEccCC-CCCCCCcccCCC
Confidence 778765 456788888875
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=4e-10 Score=130.06 Aligned_cols=249 Identities=14% Similarity=0.128 Sum_probs=151.2
Q ss_pred ccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEee-eCCeEEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGT-RRGVVELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~-~dg~V~lwd~ 285 (1134)
+....++++|+++.++++. .++.+..|+++.... .....+. .......++|+|+++.+.+++ .++.|.+|++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-----~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~ 109 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-----LPGSPTHISTDHQGRFLFSASYNANCVSVSPL 109 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-----CCCCceEEEECCCCCEEEEEEcCCCeEEEEEE
Confidence 3455689999999887764 578888888863221 1111111 113456899999999888776 4899999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecCC-CeeEE----EeccCC
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSG-CRLMS----TIRQIS 359 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~~-~~l~~----tl~~h~ 359 (1134)
++.+.... .+..+. +.....+++++|||+++.+++ .++.|.+||+.. +.+.. ......
T Consensus 110 ~~~g~~~~-----------~~~~~~-----~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 110 DKDGIPVA-----------PIQIIE-----GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred CCCCCCCC-----------ceeecc-----CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 73321111 111111 223457789999999886554 569999999965 33221 111111
Q ss_pred CCceeeeEEcCCCCCCcceEEEc----ceeEEEeCC--CceE--EEEecCCCc-------c-EEEEec-CCEEEeee-cC
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEY--GYRL--YAIEEGSSE-------R-VLIFSF-GKCCLNRG-VS 421 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sg----s~i~~W~~~--~~~l--~~~~~~h~~-------~-v~~~s~-~k~l~S~s-~d 421 (1134)
......++|+|++ +.+... .++.+|+.+ ++++ +........ . -+.+++ ++.+.+++ .+
T Consensus 174 g~~p~~~~~~pdg----~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 174 GAGPRHMVFHPNQ----QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred CCCCceEEECCCC----CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence 2345678999998 655332 288899986 3333 322211111 1 156778 78777765 46
Q ss_pred CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC-CCeE-EEEcc--CCcEEE
Q 001165 422 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR--QKKWRV 497 (1134)
Q Consensus 422 ~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~-dG~i-lwd~~--sg~Wk~ 497 (1134)
+++.+|++......+.+. ...... ...+.++++|||++|++++. ++.+ +|++. ++.++.
T Consensus 250 ~~I~v~~i~~~~~~~~~~----------------~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~ 312 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFE----------------GHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTE 312 (330)
T ss_pred CeEEEEEEeCCCCeEEEe----------------EEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEE
Confidence 889999875543321111 111111 23447899999999999886 8888 99874 555555
Q ss_pred eC
Q 001165 498 FG 499 (1134)
Q Consensus 498 F~ 499 (1134)
.+
T Consensus 313 ~~ 314 (330)
T PRK11028 313 LG 314 (330)
T ss_pred cc
Confidence 43
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.39 E-value=2.7e-11 Score=139.01 Aligned_cols=277 Identities=13% Similarity=0.169 Sum_probs=171.5
Q ss_pred EEEcCC---CCeEEEEEcCCeEEEEEeccCCccccceecccccC-CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc
Q 001165 214 LELCLP---MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 214 i~fsp~---~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~ 289 (1134)
..|++. ...|+++.+||.+.+++.....-..... ....|. |-+.+..++|-|....|++++.|.++++||++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~-~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk--- 130 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEER-QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK--- 130 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhh-hhcccccccceeEeeccCCCceeEEEccCCceeeeeeec---
Confidence 445443 2478999999999998875433221100 001122 45678899999977789999999999999998
Q ss_pred cceeeeeeeccCcceEEEE--eecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCe----------------
Q 001165 290 SLIRTVSLYDWGMREVYYT--FCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCR---------------- 350 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~--l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~---------------- 350 (1134)
++++... +.| |++.|.+++|.|+.. .+++|+.||.|.|||+.-..
T Consensus 131 ------------~s~l~G~~~~~G----H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 131 ------------TSRLVGGRLNLG----HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred ------------cceeecceeecc----cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 3333332 444 999999999999655 88999999999999984211
Q ss_pred ----eEEEe----cc--CCCCceee---eEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEec--------CC---
Q 001165 351 ----LMSTI----RQ--ISLSSISS---PIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEE--------GS--- 402 (1134)
Q Consensus 351 ----l~~tl----~~--h~~~~V~s---v~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~--------~h--- 402 (1134)
....+ +. .+...+.+ +.+..|+ ..|++++ .+++||+.......... -|
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe----~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE----STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEEEEEecc----ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 00000 00 01122333 4445565 6777765 89999997644322110 12
Q ss_pred CccEEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCC-c-eEEEEEcCCCCEE
Q 001165 403 SERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-P-VQHVAASKDGMFL 477 (1134)
Q Consensus 403 ~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~-~-V~~va~SpdG~~L 477 (1134)
.-+++.|.. |..+...+.|++|+.|++..-... ....+.++-. . -.....||||.++
T Consensus 271 s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s------------------P~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS------------------PVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC------------------chhhccCcccceeeeeeecCCCCceE
Confidence 112233322 778888888999999997543331 0112222211 1 1234579999999
Q ss_pred EEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCC--E-EEEEEEecCCCeeEEEEEeCC
Q 001165 478 AVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--I-IVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 478 Asgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~--~-lv~~~~~~~~~~~eLrly~~~ 539 (1134)
++|+.|+.+ +|.+.+-. ..- ...--..+.|+.++|... . +++| +++..+++|...
T Consensus 333 ~SgSsd~~ayiw~vs~~e-~~~-~~l~Ght~eVt~V~w~pS~~t~v~Tc-----SdD~~~kiW~l~ 391 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE-APP-ALLLGHTREVTTVRWLPSATTPVATC-----SDDFRVKIWRLS 391 (720)
T ss_pred eccCCCcceeeeeecCcc-CCh-hhhhCcceEEEEEeeccccCCCceee-----ccCcceEEEecc
Confidence 999999999 99986542 110 111112356788889743 2 4444 345667888774
No 172
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=6e-11 Score=126.63 Aligned_cols=237 Identities=15% Similarity=0.260 Sum_probs=148.5
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC-------CEEEEEEEE
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-------LYLHIFKVQ 97 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d-------g~l~lw~l~ 97 (1134)
++|+.|..-||+++++..+|++++ |-... ..|.. ...| ..-+.----.++||..++. +.|.||| +
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~-P~ke~--~~r~~---~~~G-~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-D 82 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCD-PFKES--ASRQF---IDGG-FKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-D 82 (346)
T ss_pred EEEccCCceEEEEecCceEEEecC-chhhh--hhhcc---ccCc-hhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-c
Confidence 889999999999999999999997 52111 11111 1112 2112222234566665433 3588898 2
Q ss_pred ecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcc
Q 001165 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (1134)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~ 177 (1134)
...+ ++..+.|. ..|.++...++.|++.. .+.+++|.+.........++
T Consensus 83 ~k~~------------~i~el~f~-----------~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~e------- 131 (346)
T KOG2111|consen 83 LKER------------CIIELSFN-----------SEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIE------- 131 (346)
T ss_pred ccCc------------EEEEEEec-----------cceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeee-------
Confidence 2111 11122221 24777777888888876 56677777764422211110
Q ss_pred ccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC--eEEE-EEcCCeEEEEEeccCCccccceecccccC
Q 001165 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR--LLFV-LYSNGQLMSCSVSKKGLKLAEFIKIDKEL 254 (1134)
Q Consensus 178 ~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~--~la~-~~sDG~v~l~~~~~~~~~~~~~~~~~~~~ 254 (1134)
. ....++ + ++++|..+ .+|. +..-|.+.+.++.......+.-+. .
T Consensus 132 -t------------------------~~NPkG-l--C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~----A 179 (346)
T KOG2111|consen 132 -T------------------------RSNPKG-L--CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN----A 179 (346)
T ss_pred -c------------------------ccCCCc-e--EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE----c
Confidence 0 000011 2 23344433 2222 345588998887544332222233 2
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCe-EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~-V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
|.+++.|++.|-+|.++|+|+..|| |||||.. +|+.+..++.. .....|.||+||||+.+||
T Consensus 180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~---------------~g~~l~E~RRG--~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTE---------------DGTLLQELRRG--VDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred ccCceeEEEEcCCccEEEEeccCcEEEEEEEcC---------------CCcEeeeeecC--CchheEEEEEeCCCccEEE
Confidence 5689999999999999999999998 8999999 77777776530 1345699999999999999
Q ss_pred EEECCCcEEEEecCCC
Q 001165 334 VGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 334 sg~~Dg~I~vWdv~~~ 349 (1134)
++|+.||+.|+.+...
T Consensus 243 vsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEcCCCeEEEEEeecC
Confidence 9999999999998764
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=7.6e-12 Score=138.17 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=63.5
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
.+.++|+++|++|+++|.|+.||.|.||+.. +-+.++-. ...|.+.|+.|.|+||.+++++-
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~---------------~lq~~~~v---k~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAK---------------SLQRLQYV---KEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEec---------------eeeeeEee---hhhheeeeeeEEEcCCcCccccc
Confidence 3678999999999999999999999999988 33443332 23599999999999999999999
Q ss_pred ECCCcEEEEecCC
Q 001165 336 WKSRGLTVWSVSG 348 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~ 348 (1134)
+.|.+..|-.+..
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999998887754
No 174
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.36 E-value=3.6e-11 Score=137.96 Aligned_cols=260 Identities=14% Similarity=0.117 Sum_probs=169.4
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~ 281 (1134)
.+..|...|.++.+.|-...|+.++.|.++.+|++......... . ...|...+-+++|.|... .+++|+.||.|.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~---~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-L---NLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-e---ecccccccchhhhccCCCcceeeccCCCcEE
Confidence 35678999999999996568888999999999999754432211 1 112346677899999655 689999999999
Q ss_pred EEecccccc-ce-----eeeeeec------cCcceEEEEeecccCCCCcCeEE---EEECCCCCEEEEEEC-CCcEEEEe
Q 001165 282 LYDLAESAS-LI-----RTVSLYD------WGMREVYYTFCRYSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLTVWS 345 (1134)
Q Consensus 282 lwd~~~~~~-~~-----~~l~l~~------~~~~~~l~~l~~~~~~h~g~V~~---l~fSPDG~~Lasg~~-Dg~I~vWd 345 (1134)
|||+.-.+. .. +...... .+..+.++.. ..|.+.|.+ +-+.-|...||+++. |++|+|||
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~----kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD 246 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW----KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWD 246 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc----ccccCceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence 999974330 00 0000000 0000111111 125555655 667789999999998 99999999
Q ss_pred cCCCeeEEE--------eccCC--CCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceE--EEEecCCCc-c--E-E
Q 001165 346 VSGCRLMST--------IRQIS--LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL--YAIEEGSSE-R--V-L 407 (1134)
Q Consensus 346 v~~~~l~~t--------l~~h~--~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l--~~~~~~h~~-~--v-~ 407 (1134)
+........ +.-|. ..++.++.....|. ..++++. +|.+|++.+... .....++.. . + .
T Consensus 247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt---~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT---YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS 323 (720)
T ss_pred ecccccccccCCCcccCccCcccceeeeEEEEecCCCC---eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee
Confidence 965432111 11110 12345555554441 3456655 899999876432 233333321 1 1 4
Q ss_pred EEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcC--CCCEEEEEeCCC
Q 001165 408 IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK--DGMFLAVAGLHG 484 (1134)
Q Consensus 408 ~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp--dG~~LAsgg~dG 484 (1134)
.+++ +.+++||+.|....+|.+...+. -|..++||.-.|+++++.| .+.. |++++|-
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~-------------------~~~~l~Ght~eVt~V~w~pS~~t~v-~TcSdD~ 383 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSPEA-------------------PPALLLGHTREVTTVRWLPSATTPV-ATCSDDF 383 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCccC-------------------ChhhhhCcceEEEEEeeccccCCCc-eeeccCc
Confidence 4666 88999999999999999876655 2567889999999999955 5554 5558888
Q ss_pred eE-EEEccCC
Q 001165 485 LI-LYDIRQK 493 (1134)
Q Consensus 485 ~i-lwd~~sg 493 (1134)
.+ +|++..+
T Consensus 384 ~~kiW~l~~~ 393 (720)
T KOG0321|consen 384 RVKIWRLSNG 393 (720)
T ss_pred ceEEEeccCc
Confidence 88 9999655
No 175
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.36 E-value=1.8e-10 Score=122.81 Aligned_cols=366 Identities=17% Similarity=0.159 Sum_probs=201.5
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEE-eCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-TSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~-t~dg~l~lw~l~~~~~ 101 (1134)
+...|||+|+++|++++..+.|-|...- ++ .+-..--+.+.-+.|+-|+-++.++ ..++.|.+|++....-
T Consensus 12 ~~c~fSp~g~yiAs~~~yrlviRd~~tl--q~------~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRYRLVIRDSETL--QL------HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred CceeECCCCCeeeeeeeeEEEEeccchh--hH------HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 4567999999999999999989888621 10 0111112456789999999986665 6677999999964321
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeccccCCCccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
.-.+. -+.......+++|||.+|+..++ +-.+.+|+...+.. .
T Consensus 84 ~ckId---------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~------------- 127 (447)
T KOG4497|consen 84 YCKID---------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--Y------------- 127 (447)
T ss_pred EEEec---------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--E-------------
Confidence 11110 01111123467778877777665 44666665543321 1
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeE
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV 260 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1134)
.+...+..+..++|.|+|++.++.+.-...-.+++.....+..-+.- -.+.-+.+
T Consensus 128 ----------------------~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f---~~dT~Dlt 182 (447)
T KOG4497|consen 128 ----------------------LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF---KLDTIDLT 182 (447)
T ss_pred ----------------------EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc---CCCccccc
Confidence 01122344577899999999888764322111112111111111110 12345778
Q ss_pred EEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCC-cCeEEEEECCCCCEEEEEECCC
Q 001165 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT-GPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~-g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
.+.|+|||..||+ ||-- +. -+. +. -|. -++..++|||.|++||+|+.|+
T Consensus 183 gieWsPdg~~laV---------wd~~--------Le------ykv------~a-Ye~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 183 GIEWSPDGNWLAV---------WDNV--------LE------YKV------YA-YERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred CceECCCCcEEEE---------ecch--------hh------hee------ee-eeeccceeEEEeccccceEEeeccch
Confidence 8999999998875 4321 00 000 00 022 4689999999999999999999
Q ss_pred cEEEEecCCCeeE------EEeccCCCCc------------eeeeEEcCCCCCCcceEEEcceeEEEeCC--CceE----
Q 001165 340 GLTVWSVSGCRLM------STIRQISLSS------------ISSPIVKPNQDCKYEPLMSGTSMMQWDEY--GYRL---- 395 (1134)
Q Consensus 340 ~I~vWdv~~~~l~------~tl~~h~~~~------------V~sv~~sp~~~~~~~~l~sgs~i~~W~~~--~~~l---- 395 (1134)
.+||-+-.+-+.+ ++.+...... -.++.|-|.+. ....|-.. -|+.
T Consensus 233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~----------~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL----------EAHIWEESETIYEQQMTP 302 (447)
T ss_pred hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc----------ccCccccchhhhhhhhcc
Confidence 9987554332221 1111100000 01222333220 11122211 0111
Q ss_pred --EEEecC------C--CccEEEEec-CCEEEeeecC--CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCC
Q 001165 396 --YAIEEG------S--SERVLIFSF-GKCCLNRGVS--GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 462 (1134)
Q Consensus 396 --~~~~~~------h--~~~v~~~s~-~k~l~S~s~d--~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~ 462 (1134)
+...+. . ..+..+|+. ...++|.+.. +.+-+||+..-+ ....+...
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------------------l~avLiQk 361 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---------------------LHAVLIQK 361 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---------------------hhhhhhhc
Confidence 111110 0 112366776 5566665443 345566653322 12334455
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEee--CCEEEEE
Q 001165 463 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 522 (1134)
Q Consensus 463 ~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~--~~~lv~~ 522 (1134)
.||+...++|....|++....... +|....- +..++.. + .|.+..++|. ++.++.+
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~psg~--~~V~vP~-~-GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVGVPK-K-GFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEecCC-C-CceeeeEEecCCCcEEEEE
Confidence 689999999999888888776667 9987653 2233322 2 3889999997 5667666
No 176
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.35 E-value=2.2e-11 Score=143.34 Aligned_cols=336 Identities=17% Similarity=0.192 Sum_probs=186.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEccCCcEEEeCCccceeeeEEEEEEeeCCE-EEEEEEecCCCeeEEEEEeCCCCC
Q 001165 464 PVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLD 542 (1134)
Q Consensus 464 ~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~-lv~~~~~~~~~~~eLrly~~~~ld 542 (1134)
..++++++|+|+++++.|.....+|.....+-+.+| ....++|.++. +++. +....|.+|.- ++
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G--------~g~~~vw~~~n~yAv~-----~~~~~I~I~kn--~~ 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG--------SGLSFVWSSRNRYAVL-----ESSSTIKIYKN--FK 98 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE--------E-SEEEE-TSSEEEEE------TTS-EEEEET--TE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC--------ceeEEEEecCccEEEE-----ECCCeEEEEEc--Cc
Confidence 467999999999999977666669986555444432 34568897643 3332 33567888722 22
Q ss_pred CcceeEEEecCCccEEEEecCCEEEEEEcCCeEEEEEEEEecccCCCCCCeEEEEEEEEEEeeccccCCceeEEccCCCc
Q 001165 543 QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVP 622 (1134)
Q Consensus 543 ~~~~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~p~~v~~i~~~~~ 622 (1134)
+.. .. .++-+...-.++++.++....+..+++|+|+ .++ .+++|.+. .|+.|.|...
T Consensus 99 ~~~-~k--~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~-~~~------------~i~~i~v~-------~vk~V~Ws~~ 155 (443)
T PF04053_consen 99 NEV-VK--SIKLPFSVEKIFGGNLLGVKSSDFICFYDWE-TGK------------LIRRIDVS-------AVKYVIWSDD 155 (443)
T ss_dssp E-T-T-------SS-EEEEE-SSSEEEEETTEEEEE-TT-T--------------EEEEESS--------E-EEEEE-TT
T ss_pred ccc-ce--EEcCCcccceEEcCcEEEEECCCCEEEEEhh-Hcc------------eeeEEecC-------CCcEEEEECC
Confidence 211 01 1222223445666888777777789999986 222 25666653 2566666310
Q ss_pred ccccccCCCCCcccccccCCcceEEEeeCCEEEEEecCCC---ceeeeccceeEEEEccCCCcccccccceeeEEEECCC
Q 001165 623 RECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDG---RERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYR 699 (1134)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~lil~~~g~l~~l~~~~~---~~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
++-++.......+|++.+-+.+.-..++| .-.++.+-.|+ |.++.|.++ .++|+..
T Consensus 156 -----------g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~--IkSg~W~~d--------~fiYtT~ 214 (443)
T PF04053_consen 156 -----------GELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISER--IKSGCWVED--------CFIYTTS 214 (443)
T ss_dssp -----------SSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S----SEEEEETT--------EEEEE-T
T ss_pred -----------CCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecce--eEEEEEEcC--------EEEEEcC
Confidence 11222222223333333332111111222 11334443333 233334433 3889888
Q ss_pred CcEEeccCCCCCCCCccccccCCCccccCCCceeeeeccCCcEEEEEEEeeeecc-cCCCcccccCCcccccHHHHHHHH
Q 001165 700 GMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSA-CTEFPCFEPTPQAQTILHCLLRHL 778 (1134)
Q Consensus 700 g~~vw~~~~~~~~~~~~~~~~~~~~l~f~~~~yPl~i~~~~~~i~G~~~~~~~~~-~~~~~~~~~~~~~~~~L~~il~~l 778 (1134)
+ ++-| +.+++ ..+.-++|..+|.++++++++.++.++.+..+.+ .++...+++ +..
T Consensus 215 ~-~lkY-l~~Ge---------~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~f------------k~a 271 (443)
T PF04053_consen 215 N-HLKY-LVNGE---------TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEF------------KTA 271 (443)
T ss_dssp T-EEEE-EETTE---------EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHH------------HHH
T ss_pred C-eEEE-EEcCC---------cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHH------------HHH
Confidence 8 9998 44432 2333457788999999999999999986532211 123334444 446
Q ss_pred HhcCcHHHHHHHHHHcCCCCCchhHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHHhcCchhHHHHHhh
Q 001165 779 LQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSV 858 (1134)
Q Consensus 779 l~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vLe~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~f~~~l~ivv~c 858 (1134)
|.|++.+++.++.+. ..++ | +||. ++..++++||+.. +|.|+..++
T Consensus 272 v~~~d~~~v~~~i~~---------------~~ll--------~-----~i~~-----~~~~~i~~fL~~~-G~~e~AL~~ 317 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA---------------SNLL--------P-----NIPK-----DQGQSIARFLEKK-GYPELALQF 317 (443)
T ss_dssp HHTT-HHH-----HH---------------HHTG--------G-----G--H-----HHHHHHHHHHHHT-T-HHHHHHH
T ss_pred HHcCChhhhhhhhhh---------------hhhc--------c-----cCCh-----hHHHHHHHHHHHC-CCHHHHHhh
Confidence 777887776654310 0011 1 3665 7899999999988 999999999
Q ss_pred cccccccchHHhHhccCChHHHHHHHHhcCcHHHHHhHHhhhhhccCchhhHHHHHHHHHHHhccchHhHHHHHHHhhh
Q 001165 859 ARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLL 937 (1134)
Q Consensus 859 aRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~ 937 (1134)
++..+.+ |+.+|+.|+|++|..+..-+. +.++|.+|.+.||.+|+.++|.+-..-.+
T Consensus 318 ~~D~~~r---------------FeLAl~lg~L~~A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 318 VTDPDHR---------------FELALQLGNLDIALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp SS-HHHH---------------HHHHHHCT-HHHHHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cCChHHH---------------hHHHHhcCCHHHHHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 9999999 999999999999999887443 56799999999999999999998765444
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=7.4e-12 Score=142.17 Aligned_cols=257 Identities=14% Similarity=0.061 Sum_probs=166.1
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc---cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL---KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV 279 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~ 279 (1134)
.+..|...|+++.|.|....+++++.||.+.+|++.+... .....++. -..|.++|.|+++++++..+-+|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~t-fraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILT-FRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEE-EecccCceEEEEecCCceEEEeeccCce
Confidence 3456778889999999999999999999999999944221 11222322 1235688999999999999999999999
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCC
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 359 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~ 359 (1134)
|+.|++......--... ......++.| |++.|..+++|+..+.|++++.||++++|...+... |++....
T Consensus 368 I~~w~~p~n~dp~ds~d-----p~vl~~~l~G----htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYD-----PSVLSGTLLG----HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK 437 (577)
T ss_pred eeeeccCCCCCcccccC-----cchhccceec----cccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence 99998762111000000 1122334555 999999999999999999999999999999977655 5654321
Q ss_pred C-CceeeeEEcCCCCCCcceEEEcceeEE---EeCCCceEEEEecCC-------CccE--EEEec-CCEEEeeecCCcEE
Q 001165 360 L-SSISSPIVKPNQDCKYEPLMSGTSMMQ---WDEYGYRLYAIEEGS-------SERV--LIFSF-GKCCLNRGVSGMTY 425 (1134)
Q Consensus 360 ~-~~V~sv~~sp~~~~~~~~l~sgs~i~~---W~~~~~~l~~~~~~h-------~~~v--~~~s~-~k~l~S~s~d~ti~ 425 (1134)
. ..-.++.+-.... ...+++. .... .+.+..+-+.++... ...+ ++-.+ +....++..|++|+
T Consensus 438 e~g~Plsvd~~ss~~--a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRP--AHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred ccCCcceEeeccchh--Hhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 1 1112222211110 0011111 1111 122222222222111 0111 22223 55667788888888
Q ss_pred eeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 426 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 426 ~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
+.|...+.. ......|-..++++++.|+|-+|++++.||.+ +|....+
T Consensus 515 ~~dn~~~~~--------------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 515 FFDNKTGKI--------------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccccccc--------------------chheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 888666543 44556788889999999999999999999999 9987654
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=1.1e-09 Score=126.40 Aligned_cols=279 Identities=13% Similarity=0.119 Sum_probs=156.4
Q ss_pred EEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe-CCCEEEEEEEEecCcceecCCCCCCCc
Q 001165 35 LIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGL 113 (1134)
Q Consensus 35 As~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~lw~l~~~~~~~~~~~~~~~~~ 113 (1134)
|...+++|++|+.+..+ .+....+ +...+....++++|||++|++++ .++.|.+|+++.. ..+...
T Consensus 7 ~~~~~~~I~~~~~~~~g-~l~~~~~----~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~------- 73 (330)
T PRK11028 7 ASPESQQIHVWNLNHEG-ALTLLQV----VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFA------- 73 (330)
T ss_pred EcCCCCCEEEEEECCCC-ceeeeeE----EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEe-------
Confidence 33457799999995222 1111111 11234456799999999998775 4678999999632 111100
Q ss_pred ceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeccccCCCccccccccccCCCcccc
Q 001165 114 FFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLAS 192 (1134)
Q Consensus 114 ~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s 192 (1134)
......+ ...-.++.++++.++++.. ++.+..+..+.. +... ..+.
T Consensus 74 ----------~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~--------~~~~------------ 120 (330)
T PRK11028 74 ----------AESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPV--------APIQ------------ 120 (330)
T ss_pred ----------eeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCC--------Ccee------------
Confidence 0001111 1122456778888888774 667777665421 1100 0000
Q ss_pred ccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCcccc---ceecccccCCCCCeEEEEECCCC
Q 001165 193 VDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLA---EFIKIDKELGSGDAVCASIAPEQ 268 (1134)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~va~spdg 268 (1134)
..........+.++|+++.++++. .++++.+|+++....... ..... ..+ .....++|+|+|
T Consensus 121 -----------~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~--~~g-~~p~~~~~~pdg 186 (330)
T PRK11028 121 -----------IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT--VEG-AGPRHMVFHPNQ 186 (330)
T ss_pred -----------eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec--CCC-CCCceEEECCCC
Confidence 001123356678999998876554 568999999865321110 00110 012 345689999999
Q ss_pred CEEEEeee-CCeEEEEeccccccceeeeeeeccCcceEEEEeecccC--CCCcCeEEEEECCCCCEEEEEEC-CCcEEEE
Q 001165 269 QILAVGTR-RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSM--DDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW 344 (1134)
Q Consensus 269 ~llAsG~~-dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~--~h~g~V~~l~fSPDG~~Lasg~~-Dg~I~vW 344 (1134)
+++.++.. +++|.+|++++.++.... +.++..... .+......+.++|||++|+++.. ++.|.+|
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~-----------~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIEC-----------VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF 255 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEE-----------EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence 99988776 899999999843221111 111110000 01223457999999999999854 6899999
Q ss_pred ecCCCe----eEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeC
Q 001165 345 SVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDE 390 (1134)
Q Consensus 345 dv~~~~----l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~ 390 (1134)
++.... ++...... .....+.++|++ +.+..+. ++.+|..
T Consensus 256 ~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg----~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 256 SVSEDGSVLSFEGHQPTE--TQPRGFNIDHSG----KYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEeCCCCeEEEeEEEecc--ccCCceEECCCC----CEEEEEEccCCcEEEEEE
Confidence 985322 22222211 134467788887 5554322 5666644
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.34 E-value=1.1e-10 Score=127.19 Aligned_cols=202 Identities=11% Similarity=0.107 Sum_probs=144.1
Q ss_pred cCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccceec-ccccCCCCCeEEEEECCCCC-EEEEeeeCCeE
Q 001165 204 KFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIK-IDKELGSGDAVCASIAPEQQ-ILAVGTRRGVV 280 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~va~spdg~-llAsG~~dg~V 280 (1134)
..+|.++|.+++|+|.. +.+|+++.|.++.+|.+............ .+...|...+--|+|+|... .|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 46899999999999976 68899999999999999754432111100 00112446677899999754 68889999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
.+||+. +|+.+.++. |.+.|.+++|+.||.+|++++.|+.|||||...+.+++.-.+|..
T Consensus 157 ~iWnv~---------------tgeali~l~-----hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 157 SIWNVG---------------TGEALITLD-----HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred EEEecc---------------CCceeeecC-----CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence 999999 788776643 999999999999999999999999999999999998887766643
Q ss_pred CceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceE---EEEecCCCccEEEEec---CCEE--EeeecCCcEEe
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL---YAIEEGSSERVLIFSF---GKCC--LNRGVSGMTYA 426 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l---~~~~~~h~~~v~~~s~---~k~l--~S~s~d~ti~~ 426 (1134)
..-.-+.|-.++ ..+.+|- .+-+||+++-+- +... +.+++| .|.| +..+ +.|-.|+.|+.
T Consensus 217 ~k~~Raifl~~g----~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGv-l~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 217 AKPARAIFLASG----KIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGV-LLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred CCcceeEEeccC----ceeeeccccccccceeccCcccccCcceeEEe-ccCCce-EEeeecCCCCEEEEEecCCcceEE
Confidence 444455566666 5555554 677899865321 1111 222333 2333 3322 46677888888
Q ss_pred eeeee
Q 001165 427 RQVIY 431 (1134)
Q Consensus 427 w~l~~ 431 (1134)
+.+..
T Consensus 291 yEit~ 295 (472)
T KOG0303|consen 291 FEITN 295 (472)
T ss_pred EEecC
Confidence 77644
No 180
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.32 E-value=3.3e-06 Score=108.70 Aligned_cols=395 Identities=15% Similarity=0.153 Sum_probs=195.4
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEE
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ll 146 (1134)
.+.+.++.+-+|...|++++++|.|.++..+....... ...-+.+. .+....+++||++.++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~---------------~E~VG~vd---~GI~a~~WSPD~Ella 136 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE---------------IEIVGSVD---SGILAASWSPDEELLA 136 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce---------------eEEEEEEc---CcEEEEEECCCcCEEE
Confidence 46789999999999999999999998885432110000 00011111 1122356788999999
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCccccccccccCCCc---cccccC----------CCccc---ccccCCCccc
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG---LASVDT----------SGAFV---SDHKFPISSA 210 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~---l~s~~~----------~~~~~---~~~~~~~~~~ 210 (1134)
++|.+|.+..+.-+-+......+.....+. .-+.+++.| .++-+. +.... ...+. .+..
T Consensus 137 ~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~----~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 137 LVTGEGNLLLMTRDFDPISEVPLDSDDFGE----SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred EEeCCCEEEEEeccceEEEEeecCccccCC----CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999888775443322221111000000 001111111 111000 00000 00112 3445
Q ss_pred EEEEEEcCCCCeEEEEEc---CC---eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee---CCeEE
Q 001165 211 IIWLELCLPMRLLFVLYS---NG---QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR---RGVVE 281 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~s---DG---~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~---dg~V~ 281 (1134)
-..|+|-.||.+||+.+- +| ++++|+-.+. .+... +... +--.+++|.|.|.+||+... ...|.
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~----L~stS-E~v~--gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE----LQSTS-EPVD--GLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce----EEecc-ccCC--CccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 668999999999999875 45 3455554321 11110 1111 11237899999999998765 23455
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe--eEEEeccCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQIS 359 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~--l~~tl~~h~ 359 (1134)
.|.-+ |.....|.-........|..++|++|+..||+--.| .|.+|....-. +.+.+.-..
T Consensus 285 FfErN----------------GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 285 FFERN----------------GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred EEecC----------------CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccC
Confidence 55533 111111110001145679999999999999997766 59999887643 222222111
Q ss_pred CCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEEE-e----eecCCcEEeeeeeeCCC
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL-N----RGVSGMTYARQVIYGED 434 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~-S----~s~d~ti~~w~l~~~~~ 434 (1134)
...+.. ..|+++....+.+... .+.+..+.+.-... + ....+++-+-| | .
T Consensus 348 ~~~~~~--------------------~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~vaVID---G-~ 402 (928)
T PF04762_consen 348 SESVNF--------------------VKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTVAVID---G-N 402 (928)
T ss_pred CCCCCc--------------------eEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEEEEEe---C-C
Confidence 111222 3466554333333222 12332222200000 0 00112222221 1 1
Q ss_pred eEEEeecCCCccccccccccce--eeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC-cEEE----eCCc-----
Q 001165 435 RLLVVQSEDTDELKILHLNLPV--SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRV----FGDI----- 501 (1134)
Q Consensus 435 ~l~l~~g~~~~~~~w~~~~~~~--~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg-~Wk~----F~~~----- 501 (1134)
++.+. .++...++.|. ....-..+|..++|++++..+|+-..||.+ +|....+ .|.. +...
T Consensus 403 ~lllT------pf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (928)
T PF04762_consen 403 KLLLT------PFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDS 476 (928)
T ss_pred eEEEe------cccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccc
Confidence 11111 01111222232 122345689999999999989999999988 8885432 2210 0000
Q ss_pred ----ccee-eeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 502 ----TQEQ-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 502 ----~~e~-~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
..+. ......+.|.++..+++......+...+.++...
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 477 MDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred ccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 0011 1235678898664433322322245667777664
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.32 E-value=3e-10 Score=119.42 Aligned_cols=269 Identities=17% Similarity=0.154 Sum_probs=178.5
Q ss_pred ccCCCcccEEEEEEcCCC-CeEEEEEcC-------CeEEEEEeccCCcc----ccceecccccCCCCCeEEEEECCCCCE
Q 001165 203 HKFPISSAIIWLELCLPM-RLLFVLYSN-------GQLMSCSVSKKGLK----LAEFIKIDKELGSGDAVCASIAPEQQI 270 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~-~~la~~~sD-------G~v~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~va~spdg~l 270 (1134)
.+..+.+.|..++-+|.. +.+++++++ -.+.+|++...... ....+....-...+.+.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 455677888888888865 566666653 23678887542211 111111100012468899999999998
Q ss_pred EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEecCC
Q 001165 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 271 lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
+|+- .|..|.+|+++........+... ...+|....++-+||| ||+.+++.++ +++..||+.+
T Consensus 138 lasm-~dn~i~l~~l~ess~~vaev~ss-------------~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl~~~D~RT 202 (370)
T KOG1007|consen 138 LASM-DDNNIVLWSLDESSKIVAEVLSS-------------ESAEMRHSFTSGAWSPHHDGNQVATTSD-STLQFWDLRT 202 (370)
T ss_pred eEEe-ccCceEEEEcccCcchheeeccc-------------ccccccceecccccCCCCccceEEEeCC-CcEEEEEccc
Confidence 8874 48899999998544321111110 1223566678889999 9999998874 8999999998
Q ss_pred CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc-eEEEEecCCCccEEEEe--c--CCEEEeeec
Q 001165 349 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFS--F--GKCCLNRGV 420 (1134)
Q Consensus 349 ~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~-~l~~~~~~h~~~v~~~s--~--~k~l~S~s~ 420 (1134)
......++..|...|..+.|+|+- ...+++|+ .+++||.+.- ..+....+|..-++++. + -+.++|+|.
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 777777777556689999999985 24677776 8999998653 45666778888885544 4 668899999
Q ss_pred CCcEEeeeeeeCCCeEEEeecCCCccc-------ccccc--ccceeeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEE
Q 001165 421 SGMTYARQVIYGEDRLLVVQSEDTDEL-------KILHL--NLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLILYD 489 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~~~~~~-------~w~~~--~~~~~~~~h~~~V~~va~Sp-dG~~LAsgg~dG~ilwd 489 (1134)
|..+.+|-...-....-+..+++..+. +..++ ....+|..|...|.++++|. |-=.+|+-+.||.++-+
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence 999999874332222222222222111 11111 12348889999999999975 55567788999998443
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.32 E-value=2.8e-12 Score=150.06 Aligned_cols=237 Identities=16% Similarity=0.210 Sum_probs=168.6
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
-+.+|-..|+++.|...|..++++++|..+.+|+...... ..+. .+.++++..+++.+.-++|+++.|..|+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-------Ghs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-------GHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-------CCccccchhccchhhhhhhhcccCceEE
Confidence 3568889999999999999999999999999999643221 1122 2457899999999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC--------------
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------- 347 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-------------- 347 (1134)
+|.+. .+.++..+.| |+|+|++++|||-- +.+.||++++||..
T Consensus 258 vWrl~---------------~~~pvsvLrg----htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 258 VWRLP---------------DGAPVSVLRG----HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred EEecC---------------CCchHHHHhc----cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc
Confidence 99999 7777777777 99999999999954 78899999999985
Q ss_pred CCeeEEEeccC--CC----------C---ceeeeEEcCCC--------CCCcceEEEcc---eeEEEeCCCceEEEEecC
Q 001165 348 GCRLMSTIRQI--SL----------S---SISSPIVKPNQ--------DCKYEPLMSGT---SMMQWDEYGYRLYAIEEG 401 (1134)
Q Consensus 348 ~~~l~~tl~~h--~~----------~---~V~sv~~sp~~--------~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~ 401 (1134)
++.+++++... +. + ..-.+++..+. +.. ...++.- ..++|+..+|++.....+
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred cccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcc
Confidence 11222222110 00 0 00001111100 000 0111111 567899999999999889
Q ss_pred CCccEEEEe--c--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEE
Q 001165 402 SSERVLIFS--F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 477 (1134)
Q Consensus 402 h~~~v~~~s--~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~L 477 (1134)
|.+.++++. + .+...+++.||.+.+||+-.|.. +.....+|. .+...+||+||+.+
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p-------------------ik~y~~gh~-kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP-------------------IKHYFIGHG-KLVDGKFSQDGTSI 453 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCc-------------------ceeeecccc-eeeccccCCCCceE
Confidence 888875544 4 55667999999999999765543 122334554 46688999999999
Q ss_pred EEEeCCCeE-EEEc
Q 001165 478 AVAGLHGLI-LYDI 490 (1134)
Q Consensus 478 Asgg~dG~i-lwd~ 490 (1134)
+...+-|.+ +...
T Consensus 454 ~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGT 467 (1113)
T ss_pred ecCCCCCceEEecc
Confidence 999888888 6554
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.7e-10 Score=116.15 Aligned_cols=239 Identities=14% Similarity=0.151 Sum_probs=162.9
Q ss_pred EEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEE
Q 001165 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1134)
Q Consensus 136 ~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~ 215 (1134)
.+++|.++.+++|...|++.+.+...-..+.. ...+...-.+...|+++|++++
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------------------------~~~gk~~iv~eqahdgpiy~~~ 69 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------------------------EPPGKLKIVPEQAHDGPIYYLA 69 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhcccc--------------------------CCCCCcceeeccccCCCeeeee
Confidence 35677788899999999998876653221110 0011112223468999999999
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecc----cc--cCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKI----DK--ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~----~~--~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
|.. -+.....||.|+-|..+.... ......+. .. ....-+++++.+.|...-|.+++.|+.+.-||++
T Consensus 70 f~d---~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-- 144 (325)
T KOG0649|consen 70 FHD---DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-- 144 (325)
T ss_pred eeh---hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec--
Confidence 983 234444679999988764332 11111111 00 0123467889999988888888899999999999
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCC---------
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS--------- 359 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~--------- 359 (1134)
+|+..++++| |+.-|.++.-......+.||++||++||||..+++.+++++-..
T Consensus 145 -------------~G~i~r~~rG----HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 145 -------------DGRIQREYRG----HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred -------------CCEEEEEEcC----CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 8999999998 99999999985555578899999999999999999998886431
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeee
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l 429 (1134)
...|-+++.+. .-+++|+ ..-+|.+...+...++.- ..++-...| .+.+++++..+.+..|.+
T Consensus 208 g~wigala~~e------dWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 208 GKWIGALAVNE------DWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceeEEEeccC------ceEEecCCCceeEEeccCCCceEEEec-ccceeEeeeecceEEEeccccceeeeee
Confidence 12233444332 3456655 888999988777666532 234444455 667788887778887764
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.3e-10 Score=132.49 Aligned_cols=251 Identities=11% Similarity=0.077 Sum_probs=171.3
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC--EEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ--ILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~--llAsG~~dg~V 280 (1134)
...+|.+.|.+|+..|.|..+++|+.||++++|.+.++. +++. +.-.+.|.||+|+|.+. +||++-.+. +
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-----cvr~--~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~ 466 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-----CVRT--VQFDSEIRSVAWNPLSDLCVLAVAVGEC-V 466 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-----EEEE--EeecceeEEEEecCCCCceeEEEEecCc-e
Confidence 446899999999999999999999999999999997543 3332 22336889999999876 466655444 5
Q ss_pred EEEecccc-------c-cceeee--------eeeccCc-----ce-EEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 281 ELYDLAES-------A-SLIRTV--------SLYDWGM-----RE-VYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 281 ~lwd~~~~-------~-~~~~~l--------~l~~~~~-----~~-~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
.|-+..=. + ...... ....|-. .+ -+...- .|..+|+.|.|+.+|.+||+...+
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I----~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI----KHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE----ecCCccceeeeecCCceEEEeccC
Confidence 45443211 0 000000 0001100 00 011111 278899999999999999998654
Q ss_pred ---CcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEE--EcceeEEEeCCCceEEEEecCCCccE--EEEec
Q 001165 339 ---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--SGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF 411 (1134)
Q Consensus 339 ---g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~--sgs~i~~W~~~~~~l~~~~~~h~~~v--~~~s~ 411 (1134)
..|-|..+..+...+.++.- .+.|..+.|+|.. ..+. |.-.++++|....+++..+.....-| +++++
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FHPs~----p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFHPSK----PYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred CCcceEEEEecccccccCchhhc-CCceeEEEecCCC----ceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 57889998776666666432 3468999999987 4433 33389999987665544332223333 55666
Q ss_pred -CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 412 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
|..++.++.|+.+..+|+..+.. .-.++..|...|++|+|.+.=..+|+|+.||.+ +|-
T Consensus 618 ~GDnli~gs~d~k~~WfDldlssk-------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSK-------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcc-------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 88888999999888777654433 124667899999999999999999999999999 664
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.3e-11 Score=134.47 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=130.9
Q ss_pred EEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC
Q 001165 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
-++||+++|+.+|+|+.||++|||+..+ .+.+. ....|.+.|.++.|||||+.||+-+.|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps---------------~~t~l----~e~~~~~eV~DL~FS~dgk~lasig~d- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS---------------MLTIL----EEIAHHAEVKDLDFSPDGKFLASIGAD- 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc---------------chhhh----hhHhhcCccccceeCCCCcEEEEecCC-
Confidence 6899999999999999999999999652 22222 223489999999999999999999999
Q ss_pred cEEEEecCCCeeEEEecc-CCCCceeeeEEcCCCCCCcceEEEcc---------eeEEEeCCCc-eEEEEecCCCccE--
Q 001165 340 GLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT---------SMMQWDEYGY-RLYAIEEGSSERV-- 406 (1134)
Q Consensus 340 ~I~vWdv~~~~l~~tl~~-h~~~~V~sv~~sp~~~~~~~~l~sgs---------~i~~W~~~~~-~l~~~~~~h~~~v-- 406 (1134)
..+||++.++..+..... ...-....+.|+.+++...-.+++.. .+.+|+-... ++...... .+.|
T Consensus 208 ~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSs 286 (398)
T KOG0771|consen 208 SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISS 286 (398)
T ss_pred ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCccee
Confidence 999999998866666542 22234567778777532111222211 3334544210 11111112 2344
Q ss_pred EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 407 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 407 ~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
+.++. |+.++-|+.||.+-+.+...-+. ++ ..-..|..-|+.+.|+||.+++++-+.+..
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~-~~------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQR-LQ------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeee-eE------------------eehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 55666 99999999999999887543222 11 112368889999999999999998887776
Q ss_pred E-EEEcc
Q 001165 486 I-LYDIR 491 (1134)
Q Consensus 486 i-lwd~~ 491 (1134)
+ +-.+.
T Consensus 348 ~~v~~l~ 354 (398)
T KOG0771|consen 348 AAVTKLA 354 (398)
T ss_pred eeEEEEe
Confidence 6 66553
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.5e-08 Score=119.52 Aligned_cols=295 Identities=13% Similarity=0.112 Sum_probs=172.2
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
-.++++++.|...+... +-.+.+|+....+ +.....+ ....|+-.++|.++||+++++|+|..|
T Consensus 163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~---~~~~~~~------------~~~~Htf~~t~~~~spn~~~~Aa~d~d 226 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHT---KHTSSRD------------ITVHHTFNITCVALSPNERYLAAGDSD 226 (792)
T ss_pred CccEEEcCCceEEEEEE-eeeEEEEEecccc---eeeccch------------hhhhhcccceeEEeccccceEEEeccC
Confidence 45889999988766644 4467888887422 1111000 222488889999999999999999999
Q ss_pred CcEEEEecCC----CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEE
Q 001165 339 RGLTVWSVSG----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIF 409 (1134)
Q Consensus 339 g~I~vWdv~~----~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~ 409 (1134)
|.|.+|.-++ ......+.+| .++|++++|+++| ..+.||+ -...|..++++.-...+ -.+.| .++
T Consensus 227 GrI~vw~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~kqfLPR-Lgs~I~~i~v 300 (792)
T KOG1963|consen 227 GRILVWRDFGSSDDSETCTLLHWH-HDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGKKQFLPR-LGSPILHIVV 300 (792)
T ss_pred CcEEEEeccccccccccceEEEec-ccccceeEEecCC----ceEeecccceEEEEEeecCCCcccccc-cCCeeEEEEE
Confidence 9999998765 1234456777 5799999999999 8999998 55679988876322221 12344 455
Q ss_pred ec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc--eeeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001165 410 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP--VSYISQNWPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 410 s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~--~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
++ +...+....|+.+.+-....-+... ....+..+ ..-.....-.+.++++|--+.++--|..|.+
T Consensus 301 S~ds~~~sl~~~DNqI~li~~~dl~~k~-----------tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~v 369 (792)
T KOG1963|consen 301 SPDSDLYSLVLEDNQIHLIKASDLEIKS-----------TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHV 369 (792)
T ss_pred cCCCCeEEEEecCceEEEEeccchhhhh-----------hccCccCCCccccccccccceeEEEcCCCCceeecCCCceE
Confidence 56 5555555667666653321111100 00111111 1111223346788999977788889999999
Q ss_pred -EEEccCCcE--E--EeCCccceee--eE--EEEE--EeeCCEEEEEEEe-c----CCCeeEEEEEeCC-CCCCcceeEE
Q 001165 487 -LYDIRQKKW--R--VFGDITQEQK--IQ--SKGL--LWLGKIIVVCNYI-D----SSNTYELLFYPRY-HLDQSSLLCR 549 (1134)
Q Consensus 487 -lwd~~sg~W--k--~F~~~~~e~~--~~--v~gl--~W~~~~lv~~~~~-~----~~~~~eLrly~~~-~ld~~~~~~~ 549 (1134)
.||+.+.+= + ......+..+ .. ++.. .-.+.++.+.-.. + .+++..|++|.+. +..+-.+..+
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999976531 1 1111111111 11 1211 1124444443211 1 1347889999996 4333323333
Q ss_pred EecCCcc-----EEEEecCC-EEEEEEcCCeEEEEEEEEeccc
Q 001165 550 KSLLAKP-----IVMDVYED-YILVTYRPFDVHIFHVKLFGEL 586 (1134)
Q Consensus 550 ~~l~~~~-----~~l~~~~d-~llv~~~d~~i~l~~~~~~~~~ 586 (1134)
...|... +..++.+. ..+.+..|+.+++|.+.-+.++
T Consensus 450 I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 450 INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 3444322 12233333 4444668999999988644443
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.6e-10 Score=124.27 Aligned_cols=272 Identities=15% Similarity=0.117 Sum_probs=169.3
Q ss_pred CeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC--CC
Q 001165 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL--PM 220 (1134)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp--~~ 220 (1134)
..++++.++|.+++++|... ..+. .+.++...+..|.|.. ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg--~~l~----------------------------------~fk~~~~~~N~vrf~~~ds~ 84 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--QLLE----------------------------------EFKGPPATTNGVRFISCDSP 84 (376)
T ss_pred eeEEEEecCCeEEEEeccch--hhhh----------------------------------eecCCCCcccceEEecCCCC
Confidence 34788999999999998752 1111 1223334444555654 56
Q ss_pred CeEEEEEcCCeEEEEEeccCCccccceecccccCC--CCCeEEEEECCCCCEEEEeee----CCeEEEEeccccccceee
Q 001165 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG--SGDAVCASIAPEQQILAVGTR----RGVVELYDLAESASLIRT 294 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~va~spdg~llAsG~~----dg~V~lwd~~~~~~~~~~ 294 (1134)
+.+.++++||.|++|++......... .|.+ ...-.|++.|-++++++.|+. |..|.+||+......
T Consensus 85 h~v~s~ssDG~Vr~wD~Rs~~e~a~~-----~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--- 156 (376)
T KOG1188|consen 85 HGVISCSSDGTVRLWDIRSQAESARI-----SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--- 156 (376)
T ss_pred CeeEEeccCCeEEEEEeecchhhhhe-----eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch---
Confidence 78999999999999999765432211 1111 135679999999999999974 678999999843221
Q ss_pred eeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCe----eEEEeccCCCCceeeeEEc
Q 001165 295 VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVK 369 (1134)
Q Consensus 295 l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~----l~~tl~~h~~~~V~sv~~s 369 (1134)
++. +...|...|++|+|.| |-+.|+||+-||-|.|+|+.... +.+++. + .+.|..+.|.
T Consensus 157 -----------l~~---~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~ 220 (376)
T KOG1188|consen 157 -----------LRQ---LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWL 220 (376)
T ss_pred -----------hhh---hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeee
Confidence 333 2235999999999999 66799999999999999997542 333443 2 4568888887
Q ss_pred CCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCC------------cc-EEEEec--CCEEEeeec-CCcEEeeeee
Q 001165 370 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS------------ER-VLIFSF--GKCCLNRGV-SGMTYARQVI 430 (1134)
Q Consensus 370 p~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~------------~~-v~~~s~--~k~l~S~s~-d~ti~~w~l~ 430 (1134)
.++ +..+.+-+ +..+|+.+.+.......... .. |-...+ ....+.++. .+...+.-+.
T Consensus 221 ~~~---ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 221 SKK---YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred cCC---cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee
Confidence 664 22333222 66778877665333221100 00 122223 122222222 3444433322
Q ss_pred eCCCeEEEeecCCCccccccccccceeecc-CCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 431 YGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 431 ~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~-h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
.... -...+-+..+.+ |...||++.|...+..+.+||.||.+ +|...
T Consensus 298 ~~~s--------------~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 298 DTSS--------------GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eccc--------------ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 1010 001122344444 66789999999999999999999999 99863
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.28 E-value=7.3e-11 Score=122.73 Aligned_cols=265 Identities=14% Similarity=0.127 Sum_probs=165.0
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhc--ceeEEEEcCCceEEEEEeCCCEEEEEEEEec
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG--ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G--~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~ 99 (1134)
...+.|-.+++|++-...+.|.+|... ..... ..++.+| .++.+.--|. ..+.+...|+.+.+|++..+
T Consensus 17 v~s~~fqa~~rL~sg~~~G~V~~w~lq-t~r~~-------~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 17 VTSVLFQANERLMSGLSVGIVKMWVLQ-TERDL-------PLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred heehhhccchhhhcccccceEEEEEee-cCccc-------hhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 344678888888776667899999994 43222 2233233 3566777786 57888899999999999763
Q ss_pred Cc----ceec-----------CCCCCCCcce------------------eeEEEeeceeeccccccceEEEeee---CCC
Q 001165 100 EK----SIQI-----------GGKQPSGLFF------------------IKISLVLNEQLPFAEKGLSVSNIVS---DNK 143 (1134)
Q Consensus 100 ~~----~~~~-----------~~~~~~~~~~------------------~s~~~~~~~~~~~~~~~~~V~~~s~---d~~ 143 (1134)
.. .+.. ++....++.. ..+....+. -.++.+++.|... ++.
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~---~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS---ERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch---hccccCceeeeeccccccc
Confidence 21 1100 0000000000 000000000 1122345555542 222
Q ss_pred --eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC
Q 001165 144 --HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1134)
Q Consensus 144 --~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~ 221 (1134)
.+++|-.+|+|..|+...+. ....++ + ++.- ......|..+|.+++|.+.-+
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~-~~~~~~------------------~-~~kv------~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGD-KIIQLP------------------Q-SSKV------ESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCc-eeeccc------------------c-cccc------ccchhhccCcceeeeechhhc
Confidence 24556678898875544331 111100 0 0000 012346788999999998876
Q ss_pred eEEEEEcCCeEEEEEeccCC-ccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeecc
Q 001165 222 LLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~ 300 (1134)
.=++++.+-.+..|+++... ..+...... ..+-.+..+.+-||++.+|+++.||.||||+.+
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~e~~---lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr-------------- 281 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRKEIT---LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR-------------- 281 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccceEE---ecCCCccceEEccCCcEEeecccCCcEEEEEec--------------
Confidence 66667777777788776431 111111111 112456678999999999999999999999999
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
+..++..++- |.+.|++++||||...+|+|+.|+.|.+|++
T Consensus 282 -tl~pLAVLky----Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 -TLNPLAVLKY----HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -cCCchhhhhh----hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 7777777775 9999999999999999999999999999986
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.28 E-value=6.3e-11 Score=129.94 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=124.1
Q ss_pred cCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCE
Q 001165 253 ELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSA 331 (1134)
Q Consensus 253 ~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~ 331 (1134)
|-+..++..+.|.++.. .+|+|+.|..|++|.+.......... +=+.+..+.. |.++|++|.|+|+|..
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~------~V~y~s~Ls~----H~~aVN~vRf~p~gel 79 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM------KVEYLSSLSR----HTRAVNVVRFSPDGEL 79 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce------eEEEeecccC----CcceeEEEEEcCCcCe
Confidence 44457888999999877 99999999999999987322110000 1122333444 9999999999999999
Q ss_pred EEEEECCCcEEEEecC--------C--------CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC
Q 001165 332 FAVGWKSRGLTVWSVS--------G--------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 392 (1134)
Q Consensus 332 Lasg~~Dg~I~vWdv~--------~--------~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~ 392 (1134)
||||+++|.|.+|-.. + -.....+++| ...+..++|+|++ ..+++|+ ++++||+..
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h-~~diydL~Ws~d~----~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGH-RDDIYDLAWSPDS----NFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccc-ccchhhhhccCCC----ceeeeeeccceEEEEEecc
Confidence 9999999999999765 2 1234556666 6789999999999 8888887 999999999
Q ss_pred ceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeee
Q 001165 393 YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 393 ~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~ 428 (1134)
|++.....+|...+ ++.++ ++.+++-+.|...+...
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 99999998887766 67777 88888888887444443
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-09 Score=133.62 Aligned_cols=226 Identities=12% Similarity=0.145 Sum_probs=137.0
Q ss_pred hhcceeEEEE-cCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCe
Q 001165 66 REGENLQAVW-SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1134)
Q Consensus 66 ~~G~~~~v~w-SPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ 144 (1134)
|.+.+..++- +|++.++++|++||+|++|+...-.. +. +-......+.+.+ ....+......++.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~------~~--~s~rS~ltys~~~------sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG------EG--GSARSELTYSPEG------SRVEKVTMCGNGDQ 1112 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhc------Cc--ceeeeeEEEeccC------CceEEEEeccCCCe
Confidence 3344445555 55559999999999999999964311 10 1122333444321 11223444567899
Q ss_pred EEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE-EEcCC-C-C
Q 001165 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL-ELCLP-M-R 221 (1134)
Q Consensus 145 llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i-~fsp~-~-~ 221 (1134)
+++++.||.|+....|........ ...++ + .-....+.+.+| +|... + .
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~-------~~~~r-i--------------------~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRV-------ATQVR-I--------------------PNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccce-------eeeee-c--------------------ccccCCCceEEeecccccccce
Confidence 999999999988776653111110 00011 0 111223344444 33222 2 3
Q ss_pred eEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeecc
Q 001165 222 LLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~ 300 (1134)
.++.++..+++..|++..... +..+ .. ...+-+++++++|.+.++++|+..|.+-+||+.
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk-~~----~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR-------------- 1225 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLK-NQ----LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR-------------- 1225 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhh-cC----ccccceeEEEecCCceEEEEecCCceEEEEEee--------------
Confidence 688888999999999864321 1111 11 124789999999999999999999999999998
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECC---CCCEEEEEE--CCCcEEEEecCCCeeEEEec
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTP---DNSAFAVGW--KSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~~Lasg~--~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
-+.++.... ..+..+++.|...| .....++++ ..+.|.+|++.++.+..++.
T Consensus 1226 -F~~~i~sw~---~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1226 -FRVPILSWE---HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred -cCceeeccc---CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence 333333322 12446676666655 345555554 46899999999887666654
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=6.8e-11 Score=127.13 Aligned_cols=186 Identities=15% Similarity=0.197 Sum_probs=135.9
Q ss_pred CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEec
Q 001165 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 269 ~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWdv 346 (1134)
..+|++..+|+|++||.. +++.+..+++ |.+.++.++|.. .+..+.||+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~---------------tg~~l~~fk~----~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG---------------TGQLLEEFKG----PPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEecc---------------chhhhheecC----CCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 579999999999999998 7888888887 888888888877 4678999999999999999
Q ss_pred CCCeeEEEec--cCCCCceeeeEEcCCCCCCcceEEEcc-------eeEEEeCCCceE-EEE-ecCCCccE--EEEec--
Q 001165 347 SGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YAI-EEGSSERV--LIFSF-- 411 (1134)
Q Consensus 347 ~~~~l~~tl~--~h~~~~V~sv~~sp~~~~~~~~l~sgs-------~i~~W~~~~~~l-~~~-~~~h~~~v--~~~s~-- 411 (1134)
........+. ++...+..+++.+ |+.+.+++|. .+.+||++..+. +.. ...|.+.| ++|.|
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~n----ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLN----CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred ecchhhhheeccCCCCCcceEeecc----CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 7755444433 3322234444332 3336777766 788999987654 333 35688888 56666
Q ss_pred CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCC-CEEEEEeCCCeE-EEE
Q 001165 412 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 412 ~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG-~~LAsgg~dG~i-lwd 489 (1134)
...++|||.||-+.++|+...++.- ......+|...|.++.|..+| +.|.+-+..+.- +|+
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeD-----------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEED-----------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchh-----------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 6689999999999999976654310 012234566779999998887 346666776666 999
Q ss_pred ccCCc
Q 001165 490 IRQKK 494 (1134)
Q Consensus 490 ~~sg~ 494 (1134)
.+.+.
T Consensus 241 le~~~ 245 (376)
T KOG1188|consen 241 LEDGS 245 (376)
T ss_pred ccCCC
Confidence 98775
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=3.6e-10 Score=135.06 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=139.7
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcC---CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEee-eCCeEE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT-RRGVVE 281 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sD---G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~-~dg~V~ 281 (1134)
.+...+.+..|||+|+.++.++.+ .++++|++........... .+...+++|||||+.||+++ .+|.+.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-------~g~~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-------RGHNGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-------CCccCceeECCCCCEEEEEEecCCcEE
Confidence 445678889999999999887643 3588888754332211111 12234689999999988875 688877
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecC--CCeeEEEeccC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVS--GCRLMSTIRQI 358 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~--~~~l~~tl~~h 358 (1134)
||.++-. +++ ...+.. +.+.+.+.+|||||+.|+.++ .+|...||++. ++. ...+ ++
T Consensus 274 Iy~~d~~-------------~~~-~~~lt~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l-~~ 333 (429)
T PRK01742 274 IYVMGAN-------------GGT-PSQLTS----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASLV-GG 333 (429)
T ss_pred EEEEECC-------------CCC-eEeecc----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEe-cC
Confidence 7765421 222 223333 666788999999999877655 57889999874 322 2222 22
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.. ..+.++|++ +.++..+ .+..||..+++.......+...-..++| ++.++.++.++...+|.+...+.+
T Consensus 334 -~~--~~~~~SpDG----~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 334 -RG--YSAQISADG----KTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred -CC--CCccCCCCC----CEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 22 457799998 6665433 6677999887654443333222256788 889999888998888876432111
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCC
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 473 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd 473 (1134)
....+.+|...+...+|||-
T Consensus 407 ------------------~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 ------------------FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ------------------ceEEccCCCCCCCCcccCCC
Confidence 13445566677778888874
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.27 E-value=9.6e-11 Score=132.11 Aligned_cols=146 Identities=21% Similarity=0.319 Sum_probs=110.5
Q ss_pred CcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCC---------cccccee--------c----ccccC-CCCCeEEEE
Q 001165 207 ISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKG---------LKLAEFI--------K----IDKEL-GSGDAVCAS 263 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~---------~~~~~~~--------~----~~~~~-~~~~~~~va 263 (1134)
.+..|+++.|-|-. ..|.++..+|..++++..-.. .++.... . ..+|. ..+.+...+
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 45789999998865 577788899999988542100 0110000 0 01222 234677889
Q ss_pred ECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEE
Q 001165 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 343 (1134)
Q Consensus 264 ~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~v 343 (1134)
|+|||+.||+-++||.+||||.+ +.+++..++. -=|...||+|||||++|++|++|--|.|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fd---------------t~eLlg~mkS----YFGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFD---------------TQELLGVMKS----YFGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred EcCCCceEEEEecCceEEEeecc---------------HHHHHHHHHh----hccceEEEEEcCCccEEEecCCcceEEE
Confidence 99999999999999999999998 4444444333 4578999999999999999999999999
Q ss_pred EecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 344 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 344 Wdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
|++..+++++.=.+| .+.|+.|+|.|-.
T Consensus 359 wSf~erRVVARGqGH-kSWVs~VaFDpyt 386 (636)
T KOG2394|consen 359 WSFEERRVVARGQGH-KSWVSVVAFDPYT 386 (636)
T ss_pred EEeccceEEEecccc-ccceeeEeecccc
Confidence 999999988877777 8999999998753
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.25 E-value=3.7e-10 Score=134.84 Aligned_cols=270 Identities=13% Similarity=0.116 Sum_probs=167.2
Q ss_pred CCCCceeEEEeecCe-EEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceE--EEEEeCCCEEEE
Q 001165 18 CPSSQQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLHI 93 (1134)
Q Consensus 18 ~~~~~~iv~fS~dg~-llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~--Lav~t~dg~l~l 93 (1134)
|++...++.|+|... ++|.+. ++.|.+||...+..+... .-+.....+...++.+.|-.+-.. +++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 556667788999855 566555 679999999865442100 011112224567889999665544 999999999999
Q ss_pred EEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeee-CCCeEEEEecCCcEEEEecCCccccceecccc
Q 001165 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (1134)
Q Consensus 94 w~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~-d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~ 172 (1134)
|+++.-..+.....-+.. .. .+.-.-....+.+..|.+ +...+++||..|.|+...+.+...+...
T Consensus 320 W~~~~l~~P~e~~~~~~~--------~~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~---- 386 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESK--------KH-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV---- 386 (555)
T ss_pred eeccccccchhhcccccc--------cc-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc----
Confidence 988653221110000000 00 000000011112223322 5678999999999998666654322200
Q ss_pred CCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEec-cCCccccceeccc
Q 001165 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKID 251 (1134)
Q Consensus 173 ~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~-~~~~~~~~~~~~~ 251 (1134)
-+- .......|.++|+.+.++|.+..+.....|.++++|.-. ...+.. +..
T Consensus 387 ----------~~~--------------~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~----~~~ 438 (555)
T KOG1587|consen 387 ----------SYK--------------GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL----SLD 438 (555)
T ss_pred ----------ccc--------------ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch----hhh
Confidence 000 001245688999999999999776666669999999865 222211 100
Q ss_pred ccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC
Q 001165 252 KELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS 330 (1134)
Q Consensus 252 ~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~ 330 (1134)
.....+++++|||... .+|++..||.+.+||+.... .++..+.+- +....+.+.|+++|+
T Consensus 439 --~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-------------~~Pv~s~~~----~~~~l~~~~~s~~g~ 499 (555)
T KOG1587|consen 439 --SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-------------EEPVLSQKV----CSPALTRVRWSPNGK 499 (555)
T ss_pred --hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-------------cCCcccccc----cccccceeecCCCCc
Confidence 1224489999999664 68888999999999997322 112222111 345667899999999
Q ss_pred EEEEEECCCcEEEEecCC
Q 001165 331 AFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 331 ~Lasg~~Dg~I~vWdv~~ 348 (1134)
.|++|...|++.+|++..
T Consensus 500 ~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 500 LLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEecCCCcEEEEEcCc
Confidence 999999999999999964
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.4e-10 Score=133.70 Aligned_cols=294 Identities=16% Similarity=0.162 Sum_probs=176.6
Q ss_pred ceeEEEeecCeEEEEEcC-CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEE--cCCceEEEEEeCCCEEEEEEEEe
Q 001165 22 QQIIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW--SPDTKLIAVVTSSLYLHIFKVQI 98 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w--SPDg~~Lav~t~dg~l~lw~l~~ 98 (1134)
..++.|.|=...++++.+ ..|+|||...+... ..+.-.. ...-.+.++.+ --|..++.+++.||.||||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-~~F~n~~---~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-NGFDNGA---FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCcee-ccccCCC---CCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 455778888778888774 58999999755432 2221111 01123455555 34667899999999999998633
Q ss_pred cC-cceecCCCCCCCcceeeEEEe-eceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCc
Q 001165 99 TE-KSIQIGGKQPSGLFFIKISLV-LNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1134)
Q Consensus 99 ~~-~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~ 176 (1134)
.. ++. --..+|. ..+..+.....+.+..+....+.++++..-..|++ ||.+....
T Consensus 1143 ~~~~~~-----------eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI--WDa~~E~~---------- 1199 (1387)
T KOG1517|consen 1143 DKWKKP-----------ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI--WDAHKEQV---------- 1199 (1387)
T ss_pred cccCCc-----------eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE--Eeccccee----------
Confidence 21 110 0111222 22222222233456677666677777655445555 66543221
Q ss_pred cccccccccCCCccccccCCCcccccccCCCcccEEEEEEc-CCCCeEEEEEcCCeEEEEEeccCCccccceecccccCC
Q 001165 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC-LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG 255 (1134)
Q Consensus 177 ~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs-p~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~ 255 (1134)
...+|+ +....|++++-+ +.|+.+++|+.||.+.+++.....+...-..+. .|
T Consensus 1200 --~~diP~---------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h 1253 (1387)
T KOG1517|consen 1200 --VADIPY---------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---EH 1253 (1387)
T ss_pred --Eeeccc---------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec---cc
Confidence 223333 223344554332 236899999999999999886544332222221 12
Q ss_pred C--CCeEEEEECCCCCE-EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCC--c-CeEEEEECCCC
Q 001165 256 S--GDAVCASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT--G-PVSCIAWTPDN 329 (1134)
Q Consensus 256 ~--~~~~~va~spdg~l-lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~--g-~V~~l~fSPDG 329 (1134)
+ ..|..+.+.+.|-- |++|+.||.|++||+.... ....+ ++. .|. | .++++..+++.
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~------------~iv----~~~~yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFL------------TIV----AHWEYGSALTALTVHEHA 1316 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccc------------eee----eccccCccceeeeeccCC
Confidence 2 33889999997654 9999999999999998421 00000 000 122 4 59999999999
Q ss_pred CEEEEEECCCcEEEEecCCCeeEEEec------cCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 330 SAFAVGWKSRGLTVWSVSGCRLMSTIR------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 330 ~~Lasg~~Dg~I~vWdv~~~~l~~tl~------~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
..+|+|+. +.|+|||+.|.++ ..++ +.....+++++|+|.. -.++.|. ++-++..+
T Consensus 1317 piiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~----~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1317 PIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHR----LLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred CeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchh----HhhhhccCCceEEEeecC
Confidence 99999998 8999999988653 2332 1223467888888875 4555554 45555443
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.23 E-value=2e-10 Score=129.06 Aligned_cols=202 Identities=9% Similarity=0.082 Sum_probs=131.8
Q ss_pred EEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcce
Q 001165 36 IASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (1134)
Q Consensus 36 s~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~ 115 (1134)
+.+|+.+.|-+-. +...|+.+ .|.|.+.+..|+|||.-|++++.||.|++|.-..-......+ .+.++
T Consensus 81 ~s~DGkf~il~k~------~rVE~sv~--AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q----~~~~v 148 (737)
T KOG1524|consen 81 CSNDGRFVILNKS------ARVERSIS--AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ----NEESI 148 (737)
T ss_pred EcCCceEEEeccc------chhhhhhh--hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh----cCcee
Confidence 3445666665543 23333332 245778899999999999999999999999875322222111 11233
Q ss_pred eeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccC
Q 001165 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1134)
Q Consensus 116 ~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~ 195 (1134)
.+++|. |+.+.++-+ ..|++.+-......
T Consensus 149 ~c~~W~------------------p~S~~vl~c-~g~h~~IKpL~~n~-------------------------------- 177 (737)
T KOG1524|consen 149 RCARWA------------------PNSNSIVFC-QGGHISIKPLAANS-------------------------------- 177 (737)
T ss_pred EEEEEC------------------CCCCceEEe-cCCeEEEeeccccc--------------------------------
Confidence 344443 333333333 33444332211110
Q ss_pred CCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEee
Q 001165 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT 275 (1134)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~ 275 (1134)
....+..|++-|.+++|+|..+.+++++.|-+..+|+..+....... .+..++|+++|||+ +++|+|+
T Consensus 178 ----k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~-------~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 178 ----KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSA-------AEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred ----ceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCC-------hhccceeeeeeccc-cceeeee
Confidence 01135678999999999999999999999999999998654433222 13367999999999 8888877
Q ss_pred eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEE
Q 001165 276 RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 343 (1134)
Q Consensus 276 ~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~v 343 (1134)
.+ +.|+ + ....|.|..++|||||..++.|...|.+.+
T Consensus 246 ~n-t~R~---~---------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 246 YN-TARF---S---------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeee---c---------------------------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 54 3442 1 116799999999999999999988766543
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.23 E-value=6e-10 Score=133.14 Aligned_cols=258 Identities=15% Similarity=0.115 Sum_probs=171.6
Q ss_pred CCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCE--EEEeeeCCeEEE
Q 001165 206 PISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQI--LAVGTRRGVVEL 282 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~l--lAsG~~dg~V~l 282 (1134)
.-.+.|.++.|+|.. +.++.|+-+|+|.+|+...........+....-.+...++.+.|-.+..- +++++.||.|..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 346789999999975 78888999999999999765432222222111124567777777665444 999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCee--------EE
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL--------MS 353 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l--------~~ 353 (1134)
|+++.-........+-. .+. ++........+++++|.| +-+.+++|.++|.|.-=+-.+.+. ..
T Consensus 320 W~~~~l~~P~e~~~~~~---~~~----~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~ 392 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLES---KKH----KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS 392 (555)
T ss_pred eeccccccchhhccccc---ccc----cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc
Confidence 99885433221111000 000 000011245689999988 677899999999887633332211 11
Q ss_pred EeccCCCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCC-CceEEEEecCCCccE--EEEecCC--EEEeeecCCcEEe
Q 001165 354 TIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGK--CCLNRGVSGMTYA 426 (1134)
Q Consensus 354 tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~-~~~l~~~~~~h~~~v--~~~s~~k--~l~S~s~d~ti~~ 426 (1134)
....| .+.|.++.++|-.. ..+.+++ ++++|... ....+.....+...+ ++.++.+ .++++..||.+.+
T Consensus 393 ~~~~h-~g~v~~v~~nPF~~---k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 393 TFITH-IGPVYAVSRNPFYP---KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred ccccc-CcceEeeecCCCcc---ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 22223 67899999999873 3344444 99999977 555555555556667 6677755 6678889999999
Q ss_pred eeeeeCCCeEEEeecCCCccccccccccce-eeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 427 RQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 427 w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~-~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
||+++...+ |. +..-+....+.+.++++|+.||+|...|.+ +|++...
T Consensus 469 WDLl~~~~~-------------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 469 WDLLQDDEE-------------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhhccccC-------------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 998876553 32 222335567778889999999999999999 9998643
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.3e-09 Score=130.07 Aligned_cols=236 Identities=14% Similarity=0.051 Sum_probs=136.2
Q ss_pred CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeC---CCEEEEEEEEecCcceecCCCCCCCccee
Q 001165 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1134)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~---dg~l~lw~l~~~~~~~~~~~~~~~~~~~~ 116 (1134)
..|.+||.+...... ..+ ..+.+...+|||||+.||..+. +..|.+|++..+.......
T Consensus 179 ~~l~~~d~dg~~~~~--lt~------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~---------- 240 (429)
T PRK03629 179 YELRVSDYDGYNQFV--VHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------- 240 (429)
T ss_pred eeEEEEcCCCCCCEE--eec------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----------
Confidence 368899886332111 111 2345788999999999998653 3457888875432111100
Q ss_pred eEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccC
Q 001165 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1134)
Q Consensus 117 s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~ 195 (1134)
+.+. .....++|||+.|+... .+|...++.||.+.....
T Consensus 241 -----------~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------------------------- 280 (429)
T PRK03629 241 -----------FPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------------------- 280 (429)
T ss_pred -----------CCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----------------------------
Confidence 0000 01236788888887653 455544445554322111
Q ss_pred CCcccccccCCCcccEEEEEEcCCCCeEEEEEcC-CeEEEE--EeccCCccccceecccccCCCCCeEEEEECCCCCEEE
Q 001165 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSC--SVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILA 272 (1134)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sD-G~v~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llA 272 (1134)
.+......+....|+|+++.++.++.+ |...+| +..+.... .+. +. .....+.+|+|||+.||
T Consensus 281 -------~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~---~lt---~~-~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 281 -------QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ---RIT---WE-GSQNQDADVSSDGKFMV 346 (429)
T ss_pred -------EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE---Eee---cC-CCCccCEEECCCCCEEE
Confidence 011222345678999999988887764 444444 44332221 111 11 12345688999999998
Q ss_pred EeeeC---CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCc---EEEEec
Q 001165 273 VGTRR---GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSV 346 (1134)
Q Consensus 273 sG~~d---g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~---I~vWdv 346 (1134)
..+.+ ..|.+||++ +++. ..+.. .......+|||||+.|+.++.+++ +.+|++
T Consensus 347 ~~~~~~g~~~I~~~dl~---------------~g~~-~~Lt~-----~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLA---------------TGGV-QVLTD-----TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEccCCCceEEEEECC---------------CCCe-EEeCC-----CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 86643 357778876 3322 11111 112346789999999999998875 677787
Q ss_pred CCCeeEEEeccCCCCceeeeEEcC
Q 001165 347 SGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 347 ~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
.|+. ...+.+| ...+..++|+|
T Consensus 406 ~G~~-~~~l~~~-~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRF-KARLPAT-DGQVKFPAWSP 427 (429)
T ss_pred CCCC-eEECccC-CCCcCCcccCC
Confidence 6543 4556554 45677777776
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=5.5e-09 Score=107.66 Aligned_cols=261 Identities=12% Similarity=0.106 Sum_probs=165.2
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEE
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ll 146 (1134)
+..+.+-+|||-+++|+++..+|+|-+..+..-...-. .+.+. ..-++..++++++..+.+-.+.++
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk---------~~iv~eqahdgpiy~~~f~d~~Ll 76 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGK---------LKIVPEQAHDGPIYYLAFHDDFLL 76 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCC---------cceeeccccCCCeeeeeeehhhee
Confidence 44567788999999999999999999999864321110 11100 011234677888888887666666
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCcccc--ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEE
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA--ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i--~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la 224 (1134)
+| .||.|+-|.|..+....-. ..+ ..+|.- .-...--.|++|...|..+-+.
T Consensus 77 s~-gdG~V~gw~W~E~~es~~~--------K~lwe~~~P~~-----------------~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 77 SG-GDGLVYGWEWNEEEESLAT--------KRLWEVKIPMQ-----------------VDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ec-cCceEEEeeehhhhhhccc--------hhhhhhcCccc-----------------cCcccCCccceeEeccCCCcEE
Confidence 65 5699999999865421110 000 011110 0012235688999999998888
Q ss_pred EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcce
Q 001165 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMRE 304 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~ 304 (1134)
.+..||.++-|++..+..... . ..|.+-+.|++--.....|.+|+.||++||||.+ +++
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~--~----rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k---------------t~k 189 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQRE--Y----RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK---------------TQK 189 (325)
T ss_pred EecCCeEEEEEEecCCEEEEE--E----cCCcceeeeeeecccCcceeecCCCccEEEEecc---------------ccc
Confidence 888999999999876554221 1 1244667788875555678999999999999998 333
Q ss_pred EEEEeeccc-----CCCCc-CeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcce
Q 001165 305 VYYTFCRYS-----MDDTG-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 378 (1134)
Q Consensus 305 ~l~~l~~~~-----~~h~g-~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~ 378 (1134)
...++..+. ..|.| .|-+++-+. ..|+.|+. ..+.+|++....+.+++.- .+.|..+.|..+ ..
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGgG-p~lslwhLrsse~t~vfpi--pa~v~~v~F~~d-----~v 259 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGGG-PKLSLWHLRSSESTCVFPI--PARVHLVDFVDD-----CV 259 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEeccC--ceEEecCC-CceeEEeccCCCceEEEec--ccceeEeeeecc-----eE
Confidence 333222111 11443 477776544 46766654 6899999998888888765 345777777554 34
Q ss_pred EEEc-c-eeEEEeCCCceEEEE
Q 001165 379 LMSG-T-SMMQWDEYGYRLYAI 398 (1134)
Q Consensus 379 l~sg-s-~i~~W~~~~~~l~~~ 398 (1134)
++.| + .+..|..+| .+-..
T Consensus 260 l~~G~g~~v~~~~l~G-vl~a~ 280 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLNG-VLQAN 280 (325)
T ss_pred EEeccccceeeeeecc-EEEEe
Confidence 4444 2 677787754 44333
No 200
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.18 E-value=5.8e-10 Score=117.33 Aligned_cols=161 Identities=11% Similarity=0.117 Sum_probs=117.3
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeEEEEe
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V~lwd 284 (1134)
+.+.|.++.|.|++..+++.. |..+.+|+..........-...+...+...-++-+||| +|..+|+ ..|++++.||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEE
Confidence 456899999999999888876 78899999864332110000000001234566778998 7778887 5689999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCC-CeeEEEeccCCCCc
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSS 362 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~-~~l~~tl~~h~~~~ 362 (1134)
+. +......+ ..+|...|..+.|.|+-+ +||+|++||.|++||... ...+.++.+| ...
T Consensus 200 ~R---------------T~~~~~sI---~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-sHW 260 (370)
T KOG1007|consen 200 LR---------------TMKKNNSI---EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-SHW 260 (370)
T ss_pred cc---------------chhhhcch---hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-ceE
Confidence 98 33333332 235888899999999877 789999999999999864 4578888887 779
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
|+++.|+|..+ +.+.||+ .+.+|...
T Consensus 261 vW~VRfn~~hd---qLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 261 VWAVRFNPEHD---QLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEEecCccc---eEEEecCCCceeEEEecc
Confidence 99999999863 6777766 77788753
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.16 E-value=7.8e-10 Score=115.20 Aligned_cols=255 Identities=17% Similarity=0.075 Sum_probs=161.3
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+.++.+.|+++-|..+++ +..++.-|-+.+|.+.+......-. ..+...++.+..-|+ ..+.+-+.|+.+.+|
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r-----~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR-----LFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh-----hhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 457888999999988877 7788899999999997654332111 012345666666666 446666789999999
Q ss_pred eccccccc-ee----------eeeeec----------cC-----------cceE--EEEeecccCCCCcCeEEEEECC-C
Q 001165 284 DLAESASL-IR----------TVSLYD----------WG-----------MREV--YYTFCRYSMDDTGPVSCIAWTP-D 328 (1134)
Q Consensus 284 d~~~~~~~-~~----------~l~l~~----------~~-----------~~~~--l~~l~~~~~~h~g~V~~l~fSP-D 328 (1134)
++....-. .+ .+++.. ++ .+.. +...........|.|.|..|.. +
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 98752200 00 001100 00 0111 1111111123567888888765 4
Q ss_pred CC--EEEEEECCCcEEEEecCCCeeEEEe----------ccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC-
Q 001165 329 NS--AFAVGWKSRGLTVWSVSGCRLMSTI----------RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG- 392 (1134)
Q Consensus 329 G~--~Lasg~~Dg~I~vWdv~~~~l~~tl----------~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~- 392 (1134)
++ .|++|.++|.+-+||+..+..+-.+ ..| ..+|.++.+.+.- ..=++|+ ....|+.+.
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldyas~~----~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYASSC----DRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc-cCcceeeeechhh----cCCcCCCccccceeeeeccc
Confidence 44 5678889999999999886322222 223 5678888876543 2223433 555666543
Q ss_pred -ceEEEE--ecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceE
Q 001165 393 -YRLYAI--EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 466 (1134)
Q Consensus 393 -~~l~~~--~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~ 466 (1134)
+.+-.- ..--..++ +.+.+ +|.++|++.|+.++++...+... ...++-|...|+
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--------------------LAVLkyHsagvn 297 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--------------------LAVLKYHSAGVN 297 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc--------------------hhhhhhhhccee
Confidence 222110 00001122 56677 99999999999999987555443 456778999999
Q ss_pred EEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 467 HVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 467 ~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
++|||||-..+|+||.|+.| +|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999 9985
No 202
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.15 E-value=1.9e-09 Score=114.16 Aligned_cols=115 Identities=20% Similarity=0.325 Sum_probs=87.2
Q ss_pred CcccEEEEEEcCCCCeEEEEE--cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee---CCeEE
Q 001165 207 ISSAIIWLELCLPMRLLFVLY--SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR---RGVVE 281 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~--sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~---dg~V~ 281 (1134)
..++|.+++|+|+++.|+++. .++++.+|+....... . .+...+.++.|||+|+++|+|+. .|.+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~---~------~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF---S------FGTQPRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeE---e------ecCCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence 456799999999999988775 4568999988521111 1 12356778999999999999874 47899
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC------CCcEEEEecCCCee
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRL 351 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~------Dg~I~vWdv~~~~l 351 (1134)
+||++ +.+.+.+.. | ..++.++|||||++|+++.. |++++||+..|..+
T Consensus 129 ~wd~~---------------~~~~i~~~~-----~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 129 FWDVR---------------KKKKISTFE-----H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEECC---------------CCEEeeccc-----c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 99998 455554432 3 34789999999999999864 79999999987543
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3.8e-09 Score=114.66 Aligned_cols=265 Identities=15% Similarity=0.139 Sum_probs=159.2
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
.+.|.+++|......+.++..+|+|.+-++..........+. .+.+++..+..+|....+|+.+.+|.|.+||..+
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~----~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN----NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc----CcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 345566666666666666666666655444322111100111 1235788999999999999999999999999985
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCe-eE------EEeccCC
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LM------STIRQIS 359 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~-l~------~tl~~h~ 359 (1134)
...+...+-+. .....-.++.|.| .-.+|++++..+++-|||..... .+ ..+...
T Consensus 181 ~~~~~~~~~~A----------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~- 243 (609)
T KOG4227|consen 181 RQNPISLVLPA----------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE- 243 (609)
T ss_pred CCCCCceeeec----------------CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-
Confidence 43222111111 1234567888999 45688999999999999985432 11 111111
Q ss_pred CCceeeeEEcCCCCCCcceEEEc---ceeEEEeCCCceEEEEecCCCc-------cEEEEec--CCEEEeeecCCcEEee
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSG---TSMMQWDEYGYRLYAIEEGSSE-------RVLIFSF--GKCCLNRGVSGMTYAR 427 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sg---s~i~~W~~~~~~l~~~~~~h~~-------~v~~~s~--~k~l~S~s~d~ti~~w 427 (1134)
...-.++.|+|+| ..+++- -.-.++|..+.+|...-..|.. .+-...| -..++||+.+-.+++|
T Consensus 244 ~~~~M~~~~~~~G----~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 244 NTEWMGSLWSPSG----NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIW 319 (609)
T ss_pred chhhhheeeCCCC----CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEE
Confidence 1112456788888 555431 1445677777666655444432 1223334 4568899999999999
Q ss_pred eeeeCCCeEEEe-ecCCCcccccc-cc-ccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEE
Q 001165 428 QVIYGEDRLLVV-QSEDTDELKIL-HL-NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 497 (1134)
Q Consensus 428 ~l~~~~~~l~l~-~g~~~~~~~w~-~~-~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~ 497 (1134)
.+....+.--+. -|++...+.-. .+ .-...+.||...++++.|+|-..+|++.|-...+ +|+-....|..
T Consensus 320 klP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~~ 393 (609)
T KOG4227|consen 320 KLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWSY 393 (609)
T ss_pred ecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCCccc
Confidence 875433311110 02211111000 00 1123567999999999999999999999998888 99876555653
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.14 E-value=3.9e-10 Score=128.58 Aligned_cols=122 Identities=24% Similarity=0.283 Sum_probs=98.8
Q ss_pred CCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccc----cceecccccCCCCCeEEEEECC-CCCEEEEeeeCCe
Q 001165 206 PISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKL----AEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGV 279 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~ 279 (1134)
.++..|+++.|+|.. ..+|+++.||+|.+|.+...+... ..++- -.|.+.|+++.|+| -...||+++.|-+
T Consensus 625 ~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l---t~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 625 FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL---TIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee---ecccceEEEEEecchhhhHhhhhhccce
Confidence 356788899999964 789999999999999996543321 11111 12568899999999 4568999999999
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
|++||+. +++....+.| |++.|..++|||||+.+|+.+.||+++|+....+
T Consensus 702 i~lWDl~---------------~~~~~~~l~g----HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 702 IELWDLA---------------NAKLYSRLVG----HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred eeeeehh---------------hhhhhheecc----CcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 9999999 5555555666 9999999999999999999999999999998654
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=5.3e-09 Score=126.05 Aligned_cols=303 Identities=15% Similarity=0.101 Sum_probs=170.0
Q ss_pred eEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec
Q 001165 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (1134)
Q Consensus 71 ~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~ 150 (1134)
..+.|.|=...++++...-.|++||-+.+..-..........-.+..+.+-. ..|...+++|+.
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liN----------------e~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELIN----------------EQDDALLLTASS 1131 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeec----------------ccchhheeeecc
Confidence 4577888777899888778899999876432111111111111111111110 013456889999
Q ss_pred CCcEEEEecCCccc--cceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEc
Q 001165 151 DGSLYSISWKGEFY--GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (1134)
Q Consensus 151 dg~v~~~~wd~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s 228 (1134)
||.|++| +.-.. ++..+. ..+.+ +.++ .....+.. .-++|....+.+.+++.
T Consensus 1132 dGvIRIw--k~y~~~~~~~eLV--------Taw~~--Ls~~-------------~~~~r~~~-~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1132 DGVIRIW--KDYADKWKKPELV--------TAWSS--LSDQ-------------LPGARGTG-LVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CceEEEe--cccccccCCceeE--------Eeecc--cccc-------------CccCCCCC-eeeehhhhCCeEEecCC
Confidence 9999875 43322 111110 00000 0111 01111111 33567777677777666
Q ss_pred CCeEEEEEeccCCccccceecccccCCCCCeEEEEE-CCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE
Q 001165 229 NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI-APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY 307 (1134)
Q Consensus 229 DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~-spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~ 307 (1134)
-..|.+|+..+... ...+.. ....-+|+++- .+.|..||.|..||.||+||..-... ...+.
T Consensus 1186 ~r~IRIWDa~~E~~--~~diP~---~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------------ds~v~ 1248 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQV--VADIPY---GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------------DSLVC 1248 (1387)
T ss_pred eeEEEEEeccccee--Eeeccc---CCCccceeecccccCCceEEEeecCCceEEeecccCCc------------cccce
Confidence 66789999864321 111211 01133444432 23479999999999999999872211 11222
Q ss_pred EeecccCCCCcC--eEEEEECCCCCE-EEEEECCCcEEEEecCCCeeEE--EeccCC--CCceeeeEEcCCCCCCcceEE
Q 001165 308 TFCRYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMS--TIRQIS--LSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 308 ~l~~~~~~h~g~--V~~l~fSPDG~~-Lasg~~Dg~I~vWdv~~~~l~~--tl~~h~--~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
..+ .|+.. |..+.+-+.|-. |++|+.||.|++||+....... ++..|. .+..+++..++.. ..++
T Consensus 1249 ~~R----~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----piiA 1320 (1387)
T KOG1517|consen 1249 VYR----EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PIIA 1320 (1387)
T ss_pred eec----ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Ceee
Confidence 222 27766 999999998876 9999999999999997642221 111121 1136666666665 5666
Q ss_pred Ecc--eeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceee
Q 001165 381 SGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 458 (1134)
Q Consensus 381 sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~ 458 (1134)
+|+ .+++|+..|.++- +.+.+ |.-.
T Consensus 1321 sGs~q~ikIy~~~G~~l~-~~k~n----------------------------------------------------~~F~ 1347 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLSGEQLN-IIKYN----------------------------------------------------PGFM 1347 (1387)
T ss_pred ecCcceEEEEecChhhhc-ccccC----------------------------------------------------cccc
Confidence 655 5666666543321 11000 0000
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 459 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 459 ~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
......+.|++|.|---.+|+|..|.+| +|....+
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 0112245799999999999999999999 9987654
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=4.5e-09 Score=111.29 Aligned_cols=149 Identities=23% Similarity=0.344 Sum_probs=100.6
Q ss_pred EEEEEcCCCCeEEEEEc-C---------CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE--eeeCCe
Q 001165 212 IWLELCLPMRLLFVLYS-N---------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV--GTRRGV 279 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~s-D---------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs--G~~dg~ 279 (1134)
..+.|+|.|+.+++... + |...++.++.... ....+.. ...+.|.+++|+|+|+.+|+ |..++.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l---~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIEL---KKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeec---cCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 46788999987777554 1 2333333322111 0111110 12346899999999998765 446789
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC---CcEEEEecCCCeeEEEec
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D---g~I~vWdv~~~~l~~tl~ 356 (1134)
|.+||++ ++.+.++ +.+.++.|.|||+|++|++|+.+ |.+.+||+.....+.+.+
T Consensus 85 v~lyd~~----------------~~~i~~~------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~ 142 (194)
T PF08662_consen 85 VTLYDVK----------------GKKIFSF------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE 142 (194)
T ss_pred cEEEcCc----------------ccEeEee------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence 9999996 2233332 45678899999999999998754 669999999888887765
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEcc---------eeEEEeCCCc
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSGT---------SMMQWDEYGY 393 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sgs---------~i~~W~~~~~ 393 (1134)
. ..++.+.|+|+| +.+++++ .+++|+..|.
T Consensus 143 ~---~~~t~~~WsPdG----r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 143 H---SDATDVEWSPDG----RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred c---CcEEEEEEcCCC----CEEEEEEeccceeccccEEEEEecCe
Confidence 3 247899999999 8888765 3366666543
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=6.8e-10 Score=125.22 Aligned_cols=233 Identities=20% Similarity=0.247 Sum_probs=147.0
Q ss_pred CCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 315 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 315 ~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
+|+|-|+|+.|+.||..||||++|-.+.|||.+..++++.+...|...|.++.|-|.. ..+.++||. .|+++|+.
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEecc
Confidence 4999999999999999999999999999999999999999887669999999999864 336788876 88999986
Q ss_pred Cc----------eEEEEecCCCccE--EEEec-C-CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccce-
Q 001165 392 GY----------RLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV- 456 (1134)
Q Consensus 392 ~~----------~l~~~~~~h~~~v--~~~s~-~-k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~- 456 (1134)
.. ........|.++| ++..+ + ..+.+++.||+++..|+...... . + ...+|.
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c-----~---p-----~~~~~~~ 192 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC-----N---P-----DEDCPSI 192 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC-----C---c-----cccccHH
Confidence 41 1122223466666 44444 3 57789999999999997643221 0 0 000111
Q ss_pred --eeccCCCceEEEEEcCC-CCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeE
Q 001165 457 --SYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYE 532 (1134)
Q Consensus 457 --~~~~h~~~V~~va~Spd-G~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~e 532 (1134)
.|...--...++.+||. -.+||+||.|-++ +||.+-. -+.|....-. ..+- ......
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~-lks~~s~~~~--~~~p----------------p~~~~c 253 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV-LKSFRSDGTM--NTCP----------------PKDCRC 253 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh-ccCCCCCccc--cCCC----------------Ccccch
Confidence 11111123678999984 5689999999999 9996321 1222110000 0000 001112
Q ss_pred EEEEeCCCCCCcc-eeEEEecCCccEEEEecCCEEEEEEcCCeEEEEEEE
Q 001165 533 LLFYPRYHLDQSS-LLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 533 Lrly~~~~ld~~~-~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~~~ 581 (1134)
++.|...++-+.. .+..+..-.+.+.+++.|..+||....-.+++|++.
T Consensus 254 v~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 254 VRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred hheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 3333333331111 111111123456788888889997766677788775
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.1e-09 Score=114.40 Aligned_cols=250 Identities=10% Similarity=0.034 Sum_probs=167.0
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
|.+-+.++.||.++++||+|+.|..++||+++.... .+ +.+++..... .|...|.|++|.-..+.+.+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-~k--------~~KPI~~~~~---~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-RK--------TPKPIGVMEH---PHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHh-hc--------CCCCceeccC---ccccceEEEEEccCCeeEec
Confidence 346778999999999999999999999999983210 00 2222222111 26788999999999999999
Q ss_pred EECCCcEEEEecCCCeeEEEecc-CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc----eEEEEecCCCccE
Q 001165 335 GWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERV 406 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~----~l~~~~~~h~~~v 406 (1134)
|+.+++|.+.|+.+.+.+-.+.. ...+.|..+..+|.+ +.+++.+ .+.+||.... .+++.... ....
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~-~~~F 197 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPANS-GKNF 197 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeecCC-Cccc
Confidence 99999999999999887666543 123479999999987 7777655 7889997543 34444322 2223
Q ss_pred --EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC
Q 001165 407 --LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 482 (1134)
Q Consensus 407 --~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~ 482 (1134)
..|.| -..+++.+..+.+.+||+......++-+.+. ..+|+ .+..-.++.|+|+|+.+.+--+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~---------~~L~~----~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF---------KGLPQ----ENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc---------ccCcc----cchhhhheeeCCCCCeehhhhc
Confidence 55777 5577888888889999987655433222111 01111 1111236789999998886655
Q ss_pred CCeE-EEEccCCcEEEeCCc-cceeeeE---EEEEEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 483 HGLI-LYDIRQKKWRVFGDI-TQEQKIQ---SKGLLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 483 dG~i-lwd~~sg~Wk~F~~~-~~e~~~~---v~gl~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.... +||+.+.+...|+.. .+..=++ +..++..+++-|+. .+....|.+|..
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~t----GSD~~~i~~Wkl 321 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVAT----GSDHWGIHIWKL 321 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeec----cCcccceEEEec
Confidence 5555 999999887777543 3322222 34677877776543 134456666644
No 209
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.7e-09 Score=123.28 Aligned_cols=228 Identities=13% Similarity=0.145 Sum_probs=159.8
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEe--eeCCCe
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~--s~d~~~ 144 (1134)
...++..+|-|-..-|++++-||+|.+|+++...+ .......+- ..+.++.++|.|+ ...+++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-------s~~~~~epi--------~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-------SAEKDVEPI--------LTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-------ccccceeee--------EEEecccCceEEEEecCCceE
Confidence 44566778888778899999999999999954211 000000111 1244566777664 557899
Q ss_pred EEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEE
Q 001165 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 145 llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la 224 (1134)
++.|+.||+|+.|..... ...+. +. + .......+.+|...|..++||+..+.++
T Consensus 359 ~ysgg~Dg~I~~w~~p~n-~dp~d-------s~-----------------d-p~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPN-QDPDD-------SY-----------------D-PSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred EEeeccCceeeeeccCCC-CCccc-------cc-----------------C-cchhccceeccccceeeeeeccccccee
Confidence 999999999998654411 11110 00 0 0011235779999999999999999999
Q ss_pred EEEcCCeEEEEEeccCCc-----cccce----eccccc---------------------------C------C---CCCe
Q 001165 225 VLYSNGQLMSCSVSKKGL-----KLAEF----IKIDKE---------------------------L------G---SGDA 259 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~~~-----~~~~~----~~~~~~---------------------------~------~---~~~~ 259 (1134)
++++||+++.|......+ ....+ +....| . + ...+
T Consensus 413 scs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i 492 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI 492 (577)
T ss_pred eecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc
Confidence 999999999998754322 00000 000000 0 0 1345
Q ss_pred EEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC
Q 001165 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
.-+..+|.+.+..++..|+.|+++|.. ++++++.... |...|+++++-|+|-+|++|+.||
T Consensus 493 n~vVs~~~~~~~~~~hed~~Ir~~dn~---------------~~~~l~s~~a----~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 493 NKVVSHPTADITFTAHEDRSIRFFDNK---------------TGKILHSMVA----HKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred ceEEecCCCCeeEecccCCceeccccc---------------ccccchheee----ccceecceeecCCCceEEeecCCc
Confidence 677889999999999999999999988 7888777665 999999999999999999999999
Q ss_pred cEEEEecCCCeeEEE
Q 001165 340 GLTVWSVSGCRLMST 354 (1134)
Q Consensus 340 ~I~vWdv~~~~l~~t 354 (1134)
.+++|......++..
T Consensus 554 sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 554 SVRLWKLDVKTCVLE 568 (577)
T ss_pred eeehhhccchheeec
Confidence 999999976655443
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.08 E-value=7.7e-09 Score=110.73 Aligned_cols=237 Identities=14% Similarity=0.161 Sum_probs=159.8
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
...++|-|||+|+..+|++..+..|.||...... --+..++++. |.+.|+.|.|+|-++.|+++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------~w~~~htls~----Hd~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------LWEPAHTLSE----HDKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------Cceeceehhh----hCcceeEEeecCCCCceeEc
Confidence 3789999999999999999999999999987321 0234455555 99999999999999999999
Q ss_pred ECCCcEEEEec-CCCeeEEEe--ccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe----cCCCcc
Q 001165 336 WKSRGLTVWSV-SGCRLMSTI--RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSER 405 (1134)
Q Consensus 336 ~~Dg~I~vWdv-~~~~l~~tl--~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~----~~h~~~ 405 (1134)
+.|+.-.||.. .++.-..++ ..+ ...++++.++|.+ +.++.|+ .+-+|-.++..-|-+. +.+.+.
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 99999999998 665533332 233 5678999999998 7888777 5556666554444332 234556
Q ss_pred EEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcc-cccc----ccccceeeccCCCceEEEEEcCCCCEE
Q 001165 406 VLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKIL----HLNLPVSYISQNWPVQHVAASKDGMFL 477 (1134)
Q Consensus 406 v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~-~~w~----~~~~~~~~~~h~~~V~~va~SpdG~~L 477 (1134)
|..++. .-.++.||.|+..+++... +-.-++.|. -.|. -.++..++....+.|..+.|||+|..|
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSay-------IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAY-------IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEe-------eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence 655555 4467788999999887621 111112221 1232 112233444556679999999999999
Q ss_pred EEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCE-EEEE
Q 001165 478 AVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVC 522 (1134)
Q Consensus 478 Asgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~-lv~~ 522 (1134)
|=.+.|+.+ +=|..... .......+++ ..-..+.|-... +|++
T Consensus 222 awv~Hds~v~~~da~~p~-~~v~~~~~~~-lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGPS-ERVQSVATAQ-LPLLSVSWISENSVVAA 266 (361)
T ss_pred eEecCCCceEEeecCCCc-hhccchhhcc-CCceeeEeecCCceeec
Confidence 999999999 66655442 1112222222 344566775443 3443
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.04 E-value=5.1e-09 Score=118.50 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=91.6
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..+.|...+|+|||+.+|+++.||.++++++........-... -+...||+|||||++||+|+.|.-|.||.+.
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh------ccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 3458999999999999999999999999988654322111111 2678899999999999999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC---------------------------------------
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--------------------------------------- 327 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--------------------------------------- 327 (1134)
.++.+..-.| |+..|..|+|.|
T Consensus 363 ---------------erRVVARGqG----HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~ 423 (636)
T KOG2394|consen 363 ---------------ERRVVARGQG----HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP 423 (636)
T ss_pred ---------------cceEEEeccc----cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence 4444444334 888888888873
Q ss_pred ---------CCCEEEEEECCCcEEEEecCCC
Q 001165 328 ---------DNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 328 ---------DG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
.-+++.|.+.|..+.+||+.--
T Consensus 424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred ccccccccceEEEeecccccceEEEEecchh
Confidence 1247888899999999998643
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=5.9e-09 Score=112.95 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=136.6
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SAFAVG 335 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~Lasg 335 (1134)
.+...++||+.---+|++..|-+||+|+-++.... .++. .....|+|++|-|-+ +-|++|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt----------------~Lks---~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT----------------KLKS---VSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCc----------------eecc---hhhcceeEEEeccCCcceeeee
Confidence 56678999998888999999999999997732110 0110 134579999999954 578888
Q ss_pred ECCCcEEEEecCCCe------------eEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEe
Q 001165 336 WKSRGLTVWSVSGCR------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~------------l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~ 399 (1134)
+. ++|.+|...... ....+++.|...|+++++.+|+ ..+++++ .+++|++.++..+-..
T Consensus 160 Cr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 160 CR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred ec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCccccc
Confidence 77 799999874211 1122334345789999999998 7787766 8999999988766554
Q ss_pred cCCCcc--EEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCE
Q 001165 400 EGSSER--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF 476 (1134)
Q Consensus 400 ~~h~~~--v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~ 476 (1134)
.-.-++ ...++| +..+..+..|+..++|+..+.-.. ....-..+.|...++||+|++
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCE
Confidence 222233 478889 999999999999999975432221 011112337999999999999
Q ss_pred EEEEeCCCeEEEEcc
Q 001165 477 LAVAGLHGLILYDIR 491 (1134)
Q Consensus 477 LAsgg~dG~ilwd~~ 491 (1134)
|.-+......+|++.
T Consensus 295 LLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 295 LLFACSGSPRLYSLT 309 (445)
T ss_pred EEEEEcCCceEEEEe
Confidence 998877666688874
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=3.4e-08 Score=107.15 Aligned_cols=219 Identities=17% Similarity=0.141 Sum_probs=129.4
Q ss_pred CcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCcccc-----ceec--ccccCCCCCeEEEEECCCCCEEEEeee-C
Q 001165 207 ISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLA-----EFIK--IDKELGSGDAVCASIAPEQQILAVGTR-R 277 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~va~spdg~llAsG~~-d 277 (1134)
.+..|++++|-|.+ .-++++...| +.+|..+....... ..+. ..+..+...++++.|++||..+++++- |
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCc
Confidence 45678999999986 4666666555 77898754221110 1111 112235678999999999999999874 6
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
..|.|||.+ ++..+.-.. -..|.+.-+.|||||.+|..+.-|++.+||.-... -.+.++
T Consensus 218 ssi~iWdpd---------------tg~~~pL~~----~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~--wt~erw 276 (445)
T KOG2139|consen 218 SSIMIWDPD---------------TGQKIPLIP----KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS--WTKERW 276 (445)
T ss_pred ceEEEEcCC---------------CCCcccccc----cCCCceeeEEEcCCCCEEEEecccceeeeehhccc--ceecce
Confidence 789999999 443332211 14578999999999999999999999999965321 111111
Q ss_pred CCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 358 ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.+.+|. +--+|++.|..++....+ +..++.++| ++....-. -+. +|.+.--.+-
T Consensus 277 --------------------~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~-~~~--~k~~lliaDL 332 (445)
T KOG2139|consen 277 --------------------ILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLR-PQS--IKRVLLIADL 332 (445)
T ss_pred --------------------eccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccC-ccc--ceeeeeeccc
Confidence 111111 344677777666666555 456677666 44322111 111 1111100000
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
+. -.+.-+.++ -.+++.+++++|.|.|||+--+.+.
T Consensus 333 ---------~e---~ti~ag~~l--~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 333 ---------QE---VTICAGQRL--CCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred ---------hh---hhhhcCccc--ccCccceeeECCCCCEEEEEEcCCc
Confidence 00 000001111 1357889999999999998866553
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=5.5e-08 Score=116.21 Aligned_cols=213 Identities=12% Similarity=0.096 Sum_probs=130.3
Q ss_pred CcccEEEEEEcCCCCeEEEEEc---CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe-eeCC--eE
Q 001165 207 ISSAIIWLELCLPMRLLFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG-TRRG--VV 280 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~s---DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG-~~dg--~V 280 (1134)
+...+.+..|||||+.++.++. +..+++++..+......... .......+|||||+.||.. +.+| .|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-------~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-------PRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-------CCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 3456888999999999887653 23577777654332221111 1223468999999988865 4455 47
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC-CcEEEE--ecCCCeeEEEecc
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQ 357 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D-g~I~vW--dv~~~~l~~tl~~ 357 (1134)
.+||++ +++.. .+.. +...+...+|||||+.|+..+.+ +...|| ++.++.. ..+..
T Consensus 270 ~~~d~~---------------tg~~~-~lt~----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~ 328 (429)
T PRK03629 270 YVMDLA---------------SGQIR-QVTD----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW 328 (429)
T ss_pred EEEECC---------------CCCEE-EccC----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec
Confidence 788887 33322 2211 34567889999999999877764 455666 5666543 33333
Q ss_pred CCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeee
Q 001165 358 ISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~ 430 (1134)
. ......+.|+|++ +.++... .+.+|++++++.......+...-..+++ |+.++..+.++....+.+.
T Consensus 329 ~-~~~~~~~~~SpDG----~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 329 E-GSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred C-CCCccCEEECCCC----CEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 2 2345678899998 6554322 5778999887765444332222256777 8888887777654333322
Q ss_pred --eCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcC
Q 001165 431 --YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 472 (1134)
Q Consensus 431 --~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp 472 (1134)
.+.. +..+.+|...++..+|||
T Consensus 404 ~~~G~~--------------------~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 404 STDGRF--------------------KARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCC--------------------eEECccCCCCcCCcccCC
Confidence 1222 334445666777778876
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.02 E-value=1.9e-08 Score=107.77 Aligned_cols=248 Identities=16% Similarity=0.119 Sum_probs=164.2
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc-eecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE-FIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..+|++.+|++|...+|++.++..+.++...+..+.... ... .|...+++|.|+|....|++|+.|..-.||...
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls----~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS----EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh----hhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 467999999999999999999999999888766543221 111 245778999999999999999999999999984
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeE---EEeccCCCCce
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSI 363 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~---~tl~~h~~~~V 363 (1134)
+...-..++.+ .. +.+.+++|.|+|.++.+|+|+.-+.|.||-.++..-- ..++....+.|
T Consensus 86 ~~~~WkptlvL------------lR----iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 86 SGGTWKPTLVL------------LR----INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred CCCeeccceeE------------EE----eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 33222222222 12 7899999999999999999999999999988654321 12222235679
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeC-----CC-------------ceEEEEecCCCccE--EEEec-CCEEEeee
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDE-----YG-------------YRLYAIEEGSSERV--LIFSF-GKCCLNRG 419 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~-----~~-------------~~l~~~~~~h~~~v--~~~s~-~k~l~S~s 419 (1134)
.++.++|++ -.++.|+ ..++++. +. |+++.......+.+ +.|++ |..++=.+
T Consensus 150 ~sldWhpnn----VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 150 TSLDWHPNN----VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred eeeeccCCc----ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 999999998 7777777 5555542 11 12222211112334 56666 77888888
Q ss_pred cCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC-CcEEE
Q 001165 420 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWRV 497 (1134)
Q Consensus 420 ~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s-g~Wk~ 497 (1134)
.|.++.+-|.....++ +.......-|.+++.|-.+ ..++.||.|... ++.... +.|..
T Consensus 226 Hds~v~~~da~~p~~~-------------------v~~~~~~~lP~ls~~~ise-~~vv~ag~~c~P~lf~~~~~~~l~~ 285 (361)
T KOG1523|consen 226 HDSTVSFVDAAGPSER-------------------VQSVATAQLPLLSVSWISE-NSVVAAGYDCGPVLFVTDEEGGLSF 285 (361)
T ss_pred CCCceEEeecCCCchh-------------------ccchhhccCCceeeEeecC-CceeecCCCCCceEEEeccccceee
Confidence 8888887664333221 2222222257777777533 345667777444 666543 35654
Q ss_pred eC
Q 001165 498 FG 499 (1134)
Q Consensus 498 F~ 499 (1134)
-+
T Consensus 286 ~~ 287 (361)
T KOG1523|consen 286 AR 287 (361)
T ss_pred eh
Confidence 33
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.2e-08 Score=119.97 Aligned_cols=235 Identities=13% Similarity=0.122 Sum_probs=130.4
Q ss_pred eEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC---CEEEEEEEEecCcceecCCCCCCCcceee
Q 001165 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIK 117 (1134)
Q Consensus 41 ~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~lw~l~~~~~~~~~~~~~~~~~~~~s 117 (1134)
+|.|||.+..... ... .+.+.+...+|||||+.||..+.. ..|.+|++..+.... .....
T Consensus 185 ~l~i~D~~g~~~~--~lt------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~-------- 247 (433)
T PRK04922 185 ALQVADSDGYNPQ--TIL------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFR-------- 247 (433)
T ss_pred EEEEECCCCCCce--Eee------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCC--------
Confidence 6889998622111 111 123457789999999999988743 358888886432111 10000
Q ss_pred EEEeeceeeccccccceEEEeeeCCCeEEEE-ecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCC
Q 001165 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (1134)
Q Consensus 118 ~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~-t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~ 196 (1134)
+ ......+++||+.++.. +.+|.-.++.|+.......
T Consensus 248 ------------g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----------------------------- 285 (433)
T PRK04922 248 ------------G-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----------------------------- 285 (433)
T ss_pred ------------C-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------------
Confidence 0 00123577888877654 4455433344543321111
Q ss_pred CcccccccCCCcccEEEEEEcCCCCeEEEEEc-CCe--EEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE
Q 001165 197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQ--LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV 273 (1134)
Q Consensus 197 ~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s-DG~--v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs 273 (1134)
.+..+.......+|+|+++.++.++. +|. ++.++..+.... .+.. +.......+|||+|+.||.
T Consensus 286 ------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~lt~----~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 286 ------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---RLTF----QGNYNARASVSPDGKKIAM 352 (433)
T ss_pred ------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---Eeec----CCCCccCEEECCCCCEEEE
Confidence 01122223356789999998888764 455 444444332211 1110 1122346899999999998
Q ss_pred eeeCC---eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC---CcEEEEecC
Q 001165 274 GTRRG---VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVS 347 (1134)
Q Consensus 274 G~~dg---~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D---g~I~vWdv~ 347 (1134)
.+.++ .|.+||++ +++.. .+. +.+.....+|||||+.++..+.+ +.+.+++..
T Consensus 353 ~~~~~~~~~I~v~d~~---------------~g~~~-~Lt-----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 353 VHGSGGQYRIAVMDLS---------------TGSVR-TLT-----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EECCCCceeEEEEECC---------------CCCeE-ECC-----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 76443 58899987 33322 111 22234567999999988877654 347777886
Q ss_pred CCeeEEEeccCCCCceeeeEEcC
Q 001165 348 GCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 348 ~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
++. ...+..+ ...+..++|+|
T Consensus 412 g~~-~~~l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 412 GRV-RQRLVSA-DGEVREPAWSP 432 (433)
T ss_pred CCc-eEEcccC-CCCCCCCccCC
Confidence 643 4444332 23455566654
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.3e-08 Score=119.49 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=123.1
Q ss_pred cceeEEEEcCCceEEEEEeCC---CEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCe
Q 001165 68 GENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~d---g~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ 144 (1134)
+.+...+|||||+.||..+.+ ..|.+||+..+....... ..+ ......+++||+.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~---------------------~~g-~~~~~~~SPDG~~ 253 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN---------------------FKG-SNSAPAWSPDGRT 253 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec---------------------CCC-CccceEECCCCCE
Confidence 456789999999999987743 358888886542111100 000 0112467888888
Q ss_pred EEEE-ecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 145 MLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 145 llv~-t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
++.. +.+|...+|.++....... .+..+.+...+..|+|||+.+
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~-----------------------------------~lt~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLR-----------------------------------RLTQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcE-----------------------------------ECCCCCCCCcCeEEcCCCCEE
Confidence 8754 5567655555543321111 011222334557899999988
Q ss_pred EEEEc-CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC---eEEEEeccccccceeeeeeec
Q 001165 224 FVLYS-NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLYD 299 (1134)
Q Consensus 224 a~~~s-DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg---~V~lwd~~~~~~~~~~l~l~~ 299 (1134)
+.++. +|...+|..+..... ...+.. .+ ......+|||||+.||..+.++ .|.+||++
T Consensus 299 ~f~s~~~g~~~Iy~~~~~~g~-~~~lt~---~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~------------- 360 (427)
T PRK02889 299 YFTSDRGGAPQIYRMPASGGA-AQRVTF---TG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA------------- 360 (427)
T ss_pred EEEecCCCCcEEEEEECCCCc-eEEEec---CC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECC-------------
Confidence 87664 466666655422111 111111 11 2233578999999999877654 68999987
Q ss_pred cCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcE---EEEecCCCeeEEEeccCCCCceeeeEEcC
Q 001165 300 WGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL---TVWSVSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 300 ~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I---~vWdv~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
+++.. .+. +.+.....+|+|||+.|+.++.+++- .+-++.+ .....+..+ ...+..++|+|
T Consensus 361 --~g~~~-~lt-----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~~-~g~~~~p~wsp 424 (427)
T PRK02889 361 --TGQVT-ALT-----DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSVQ-GGDVREPSWGP 424 (427)
T ss_pred --CCCeE-Ecc-----CCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeecC-CCCCCCCccCC
Confidence 33321 111 11234678999999999888766543 3334433 334444332 33455566655
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.5e-07 Score=112.82 Aligned_cols=192 Identities=13% Similarity=0.102 Sum_probs=119.9
Q ss_pred CCeEEEEECCCCCEEEEeee---CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 257 GDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~---dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
..+.+.+|||||+.||..+. +..|.+||+. +++. ..+.. +.+.+.+.+|||||+.|+
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~---------------~g~~-~~l~~----~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE---------------TGQR-ELVGN----FPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECC---------------CCcE-EEeec----CCCcccCcEECCCCCEEE
Confidence 56789999999999998764 4689999997 3432 12222 567788899999999876
Q ss_pred -EEECCCc--EEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCCc
Q 001165 334 -VGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSE 404 (1134)
Q Consensus 334 -sg~~Dg~--I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~~ 404 (1134)
+.+.++. |.+||+.++.+ ..+..+ .....++.|+||+ +.++..+ .+.+|+..+++...+..+ ..
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~ 334 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GG 334 (435)
T ss_pred EEEecCCCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CC
Confidence 5555655 66778887764 334433 3456778999998 5554322 577788887765544322 22
Q ss_pred cE--EEEec-CCEEEeeecC-C--cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEE
Q 001165 405 RV--LIFSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLA 478 (1134)
Q Consensus 405 ~v--~~~s~-~k~l~S~s~d-~--ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LA 478 (1134)
.+ ..+++ ++.++..+.+ + .+.+|++..+..+ ...+...+...+|||||++|+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----------------------~lt~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----------------------ILTSGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE----------------------eccCCCCCCCCeECCCCCEEE
Confidence 22 45777 7777654433 2 3444443222111 111122356789999999998
Q ss_pred EEeCCC------eE-EEEccCCcEEE
Q 001165 479 VAGLHG------LI-LYDIRQKKWRV 497 (1134)
Q Consensus 479 sgg~dG------~i-lwd~~sg~Wk~ 497 (1134)
..+.++ .+ ++|+.++.-+.
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCceEE
Confidence 765432 34 66766654433
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.97 E-value=7.1e-08 Score=118.48 Aligned_cols=275 Identities=14% Similarity=0.072 Sum_probs=172.4
Q ss_pred ccCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccceecccccC-CCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
++..|.+.|..++-++.. .+|+++++||+|++|+..+........-....|. ..+.+.++..-+.+..+|+|+.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 455677778887777665 9999999999999999865332211000001122 24678899999999999999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcC-eEEEEECC-CCC-EEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGP-VSCIAWTP-DNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~-V~~l~fSP-DG~-~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
++.+++....... ..+..+.... ...|. |..-+|.. ++. .|+.+-..+.|..||+....-..+++.
T Consensus 1123 ~~~~id~~~~~~~--------~~~~~ri~n~---~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKR--------VATQVRIPNL---KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EEEEccccccccc--------eeeeeecccc---cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 9999985321110 0111111110 02233 34445544 344 677777889999999977655555543
Q ss_pred -CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec-CCCccE--EEEec--C--CEEEe-ee-cCCcE
Q 001165 358 -ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF--G--KCCLN-RG-VSGMT 424 (1134)
Q Consensus 358 -h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~-~h~~~v--~~~s~--~--k~l~S-~s-~d~ti 424 (1134)
-..+.|++++.+|.+ +-++.|. ...+||++=+.++.... ++..++ +.+.+ . ...++ ++ ..+-+
T Consensus 1192 ~~~hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred CccccceeEEEecCCc----eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 123579999999988 7777776 78899997665554432 223334 44444 3 23333 33 56788
Q ss_pred EeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 425 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 425 ~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
.+|++..|..+..+..+.+.+.+.|....- ..-+-+.-+....++..-+..+.+||.|+.| .||....
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSN-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccc-cCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 999998886655555565666555431110 0011122234456666566788899999999 9998654
No 220
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.97 E-value=5.9e-10 Score=131.02 Aligned_cols=212 Identities=15% Similarity=0.191 Sum_probs=155.7
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
|.+.|.|+.|...|+.|.+|+.|..|+||.++ ++.++.+..| |.+.|+.++.+....++|+
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~e---------------t~~~lAs~rG----hs~ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSME---------------TARCLASCRG----HSGDITDLAVSSNNTMIAA 249 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeecc---------------chhhhccCCC----Cccccchhccchhhhhhhh
Confidence 45778999999999999999999999999988 7788888777 9999999999999999999
Q ss_pred EECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEc--ceeEEEeCCCceEEEEecC---C-CccEEE
Q 001165 335 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG---S-SERVLI 408 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg--s~i~~W~~~~~~l~~~~~~---h-~~~v~~ 408 (1134)
++.|..|+||-+..+.++..+.|| ++.|++++|+|-. .|+ +++.+||..=--+..+... . ...+..
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrgh-tgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGH-TGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhcc-ccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 999999999999999999999998 8899999999864 122 2889999871111111100 0 112222
Q ss_pred Eec---CCEEEeeecCCcEEeeeeeeC---CCeEEEeecC-CCcc-----------cccc--ccccceeeccCCCceEEE
Q 001165 409 FSF---GKCCLNRGVSGMTYARQVIYG---EDRLLVVQSE-DTDE-----------LKIL--HLNLPVSYISQNWPVQHV 468 (1134)
Q Consensus 409 ~s~---~k~l~S~s~d~ti~~w~l~~~---~~~l~l~~g~-~~~~-----------~~w~--~~~~~~~~~~h~~~V~~v 468 (1134)
+-+ +...+|++.|+....|.+.+- +..+.++++. +... ..|. ..++.+...+|..++..+
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeee
Confidence 222 566788999988888875432 2233333332 2221 1232 233455667889999999
Q ss_pred EEcCCCC-EEEEEeCCCeE-EEEccCC
Q 001165 469 AASKDGM-FLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 469 a~SpdG~-~LAsgg~dG~i-lwd~~sg 493 (1134)
.+.|-.. ..-++|.||.. +||+..|
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccC
Confidence 9998554 44589999999 9999655
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=9.4e-08 Score=109.14 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=112.6
Q ss_pred EEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccce
Q 001165 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~ 292 (1134)
+|.|+....-+.++.+.-.++-+++..+.-..+-. ...+.+.+|.+|+-..+||+|+.+|.|..||..+-....
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE------TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccc------cccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 45555554445555555567776665432211111 123678899999999999999999999999988432111
Q ss_pred eeeeeeccCcceEEEEeecccCCCCc-----CeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 293 RTVSLYDWGMREVYYTFCRYSMDDTG-----PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 293 ~~l~l~~~~~~~~l~~l~~~~~~h~g-----~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
++... . ....|.+ .|++++|+-||-.+++|..+|.+.++|+...+.+..-.....-+|..+.
T Consensus 212 -~l~~~-----~-------~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 212 -TLDAA-----S-------SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred -eeecc-----c-------ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 11100 0 0011333 4999999999999999999999999999887765443333355788888
Q ss_pred EcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecC
Q 001165 368 VKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG 401 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~ 401 (1134)
|.+.+ ....++|.- .+++|+..+|+.+.....
T Consensus 279 ~~~~~--~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 279 WQDTD--QQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred ccccC--CCceEEecchHHhhhcccccCCceeeccc
Confidence 87763 124566654 888999999998777644
No 222
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.96 E-value=1.7e-07 Score=99.20 Aligned_cols=243 Identities=10% Similarity=0.043 Sum_probs=154.1
Q ss_pred CCCcccEEEEEEcCCCC-----eEEEEEcCCeEEEEEeccCCcc-ccceec-c-cccCCCCCeEEEEECC-CCCEEEEee
Q 001165 205 FPISSAIIWLELCLPMR-----LLFVLYSNGQLMSCSVSKKGLK-LAEFIK-I-DKELGSGDAVCASIAP-EQQILAVGT 275 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~-----~la~~~sDG~v~l~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~va~sp-dg~llAsG~ 275 (1134)
..|.-+++.+-|.|+.. ++| +++..+++|.+...... ..+..- . ..-......|+..||. +-++|.+.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLA--Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLA--TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhh--cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 35666777788888753 444 34567899998743221 111110 0 0111246788888887 667899999
Q ss_pred eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCeeEEE
Q 001165 276 RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMST 354 (1134)
Q Consensus 276 ~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~l~~t 354 (1134)
-|.|..|||+.... .+....++-. |...|..|+|+.+|. .+||.|.||.+|++|+..-. ..|
T Consensus 171 iDTTCTiWdie~~~------------~~~vkTQLIA----HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HST 233 (364)
T KOG0290|consen 171 IDTTCTIWDIETGV------------SGTVKTQLIA----HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HST 233 (364)
T ss_pred ccCeEEEEEEeecc------------ccceeeEEEe----cCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cce
Confidence 99999999998321 1112223333 999999999999776 88999999999999997532 222
Q ss_pred e--ccCC-CCceeeeEEcCCCCCCcceEEE---cc-eeEEEeCCC-ceEEEEecCCCccE--EEEec--CCEEEeeecCC
Q 001165 355 I--RQIS-LSSISSPIVKPNQDCKYEPLMS---GT-SMMQWDEYG-YRLYAIEEGSSERV--LIFSF--GKCCLNRGVSG 422 (1134)
Q Consensus 355 l--~~h~-~~~V~sv~~sp~~~~~~~~l~s---gs-~i~~W~~~~-~~l~~~~~~h~~~v--~~~s~--~k~l~S~s~d~ 422 (1134)
+ +... ..+..-+++++.+. +++++ .+ .+.+-|++- ...++.+++|...| ++..| ...+.|+|.|.
T Consensus 234 IIYE~p~~~~pLlRLswnkqDp---nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQDP---NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred EEecCCCCCCcceeeccCcCCc---hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 2 2211 22344555655542 33332 22 777778764 34566778999888 55556 66888999999
Q ss_pred cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcC-CCCEEEEEeCCC
Q 001165 423 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHG 484 (1134)
Q Consensus 423 ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp-dG~~LAsgg~dG 484 (1134)
...+||+.+.... +.+.| ...|. ....|+.+.+++ .+..+|++....
T Consensus 311 qaliWDl~q~~~~-----~~~dP---------ilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 311 QALIWDLQQMPRE-----NGEDP---------ILAYT-AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred eEEEEeccccccc-----CCCCc---------hhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence 9999998654320 00011 12233 445689999974 577788776543
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=6.1e-08 Score=110.65 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=160.8
Q ss_pred ceeEEEeecCeEEE-EEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEec
Q 001165 22 QQIIYFKVNNGLLL-IAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1134)
Q Consensus 22 ~~iv~fS~dg~llA-s~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~ 99 (1134)
.--|.+||||+++. ++. .-.|+++|..+-. -++.|..++ ..+.-.-.|-|=+.++....|.+|-+=.--.
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLS---LKFERhlDa----e~V~feiLsDD~SK~v~L~~DR~IefHak~G- 125 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLS---LKFERHLDA----EVVDFEILSDDYSKSVFLQNDRTIEFHAKYG- 125 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccce---eeeeecccc----cceeEEEeccchhhheEeecCceeeehhhcC-
Confidence 44578899999854 454 3489999997332 234454332 1234445677777778878888774322110
Q ss_pred CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccc
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i 179 (1134)
..+ .-+++-.+.+..-..+ +-.|+++.+...|+++..+- +.+-
T Consensus 126 --~hy------------------~~RIP~~GRDm~y~~~---scDly~~gsg~evYRlNLEq---GrfL----------- 168 (703)
T KOG2321|consen 126 --RHY------------------RTRIPKFGRDMKYHKP---SCDLYLVGSGSEVYRLNLEQ---GRFL----------- 168 (703)
T ss_pred --eee------------------eeecCcCCccccccCC---CccEEEeecCcceEEEEccc---cccc-----------
Confidence 000 0111111222211122 23467776677888776542 2220
Q ss_pred ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc----cceeccccc-C
Q 001165 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL----AEFIKIDKE-L 254 (1134)
Q Consensus 180 ~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~----~~~~~~~~~-~ 254 (1134)
.++....+.+++|..++-.+++++++.+|.|.+|+......-. ...+..... .
T Consensus 169 ----------------------~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 169 ----------------------NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred ----------------------cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 0122334778899999999999999999999999986432111 001100000 0
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCC--cCeEEEEECCC--CC
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT--GPVSCIAWTPD--NS 330 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~--g~V~~l~fSPD--G~ 330 (1134)
....+++++|+.+|-.+|+|+.+|.|.+||+. +.+++..- .|. -+|..+.|-+. +.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLR---------------a~~pl~~k-----dh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR---------------ASKPLLVK-----DHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcc---------------cCCceeec-----ccCCccceeeecccccCCCc
Confidence 12358899999999999999999999999999 33333221 143 47899999774 45
Q ss_pred EEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 331 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 331 ~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
.++|... ..++|||-.++..+..++. +..++.+++-|++
T Consensus 287 ~v~S~Dk-~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~s 325 (703)
T KOG2321|consen 287 KVVSMDK-RILKIWDECTGKPMASIEP--TSDLNDFCFVPGS 325 (703)
T ss_pred eEEecch-HHhhhcccccCCceeeccc--cCCcCceeeecCC
Confidence 6666654 7999999999888877765 3446666666654
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.95 E-value=6.6e-07 Score=97.97 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=160.7
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCC-eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
.+..|..+-||.+.-.++.. .++ ...++++.+.. .+.. ..-...+.+|.+|.+. |++.-. +.|.|||+
T Consensus 45 ~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~-----~ICe--~~fpt~IL~VrmNr~R--LvV~Le-e~IyIydI 113 (391)
T KOG2110|consen 45 EGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKT-----TICE--IFFPTSILAVRMNRKR--LVVCLE-ESIYIYDI 113 (391)
T ss_pred CCeEEEEeecccceeEEEec-CCCceEEEEEcccCc-----eEEE--EecCCceEEEEEccce--EEEEEc-ccEEEEec
Confidence 45677788888775444433 333 24444443211 1111 0123678888888763 445444 45999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE--CCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~--~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
+ .-++++++.. .+.+...+.++++++.+.+||-=+ ..|.|.|||+.+-+.+.++..| .+++
T Consensus 114 ~---------------~MklLhTI~t-~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~l 176 (391)
T KOG2110|consen 114 K---------------DMKLLHTIET-TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPL 176 (391)
T ss_pred c---------------cceeehhhhc-cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCce
Confidence 9 5666666543 223566788888888888998643 3489999999999999999977 8899
Q ss_pred eeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEecCCCc--cE--EEEec-CCEEEeeecCCcEEeeeeeeCCC
Q 001165 364 SSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSE--RV--LIFSF-GKCCLNRGVSGMTYARQVIYGED 434 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~~h~~--~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~ 434 (1134)
.+++|+++| ..+++++ -|+++.+..|+.+..++.... .| ++|++ ++.+...|..+||+++-+.+...
T Consensus 177 Aalafs~~G----~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 177 AALAFSPDG----TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN 252 (391)
T ss_pred eEEEECCCC----CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc
Confidence 999999999 9999988 788999988888777754333 34 44555 77888888889999988654321
Q ss_pred eEEEeecCCCcc--cc--------------------ccccccceeeccCCCce-EEEEEc--CCCCEEEEEeCCCeE-EE
Q 001165 435 RLLVVQSEDTDE--LK--------------------ILHLNLPVSYISQNWPV-QHVAAS--KDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 435 ~l~l~~g~~~~~--~~--------------------w~~~~~~~~~~~h~~~V-~~va~S--pdG~~LAsgg~dG~i-lw 488 (1134)
.+.+.|. -. |....-..+........ ..++++ +++.++.+|+.||.. .|
T Consensus 253 -----~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y 327 (391)
T KOG2110|consen 253 -----NPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSY 327 (391)
T ss_pred -----CCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence 1222111 01 11111011111111111 334454 588999999999999 88
Q ss_pred EccC
Q 001165 489 DIRQ 492 (1134)
Q Consensus 489 d~~s 492 (1134)
.+..
T Consensus 328 ~l~~ 331 (391)
T KOG2110|consen 328 RLPP 331 (391)
T ss_pred EcCC
Confidence 8754
No 225
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.93 E-value=4.9e-08 Score=103.25 Aligned_cols=204 Identities=12% Similarity=0.141 Sum_probs=136.8
Q ss_pred CCCCeEEEEECCCC-----CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-C
Q 001165 255 GSGDAVCASIAPEQ-----QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-D 328 (1134)
Q Consensus 255 ~~~~~~~va~spdg-----~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-D 328 (1134)
+.-+++.+-|.|+. ++||+.+ ..+|+|.+....+..+...... +. ....+.+++++..|.. |
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~--~~--------kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLN--NN--------KNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhc--cC--------cccccCCcccccccccCC
Confidence 44678899999986 3677644 4899999984322211100000 00 1123678999999987 8
Q ss_pred CCEEEEEECCCcEEEEecCCCee---EEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCce---EEEEe
Q 001165 329 NSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIE 399 (1134)
Q Consensus 329 G~~Lasg~~Dg~I~vWdv~~~~l---~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~---l~~~~ 399 (1134)
-+++.+++-|-|..|||+..+.. ...+-.| ..+|..++|..++. +.++|.+ +++++|++.-+ ++...
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH-DKEV~DIaf~~~s~---~~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH-DKEVYDIAFLKGSR---DVFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEec-CcceeEEEeccCcc---ceEEEecCCCcEEEEEecccccceEEecC
Confidence 88999999999999999987632 2334445 78999999998652 5677654 99999986532 22221
Q ss_pred cCCCccEEEEecCC----EEEeeecC-CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcC-C
Q 001165 400 EGSSERVLIFSFGK----CCLNRGVS-GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-D 473 (1134)
Q Consensus 400 ~~h~~~v~~~s~~k----~l~S~s~d-~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp-d 473 (1134)
......+..+++.+ .++|...| ..+.+-|+..... ....+.+|...|+.+++-| .
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-------------------pva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-------------------PVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-------------------ceehhhcCcccccceEecCCC
Confidence 12244566666632 44554443 2344455443332 1346789999999999988 5
Q ss_pred CCEEEEEeCCCeE-EEEccCC
Q 001165 474 GMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 474 G~~LAsgg~dG~i-lwd~~sg 493 (1134)
+.+|+++|+|..+ +||+.+-
T Consensus 300 ~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CceeeecCCcceEEEEecccc
Confidence 7899999999999 9999764
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=8.9e-08 Score=114.47 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=112.5
Q ss_pred CcccEEEEEEcCCCCeEEEEEcC---CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE-eeeCCeEEE
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV-GTRRGVVEL 282 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sD---G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs-G~~dg~V~l 282 (1134)
+...+.+..|+|+++.++.++.+ ..+++|++.+........ ..+...+.+|||||+.||. .+.+|...|
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-------~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-------FKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-------CCCCccceEECCCCCEEEEEEccCCCceE
Confidence 34567788999999998887643 348888876543221111 1134457899999998875 577888888
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CCcEEEEec--CCCeeEE-EeccC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMS-TIRQI 358 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg~I~vWdv--~~~~l~~-tl~~h 358 (1134)
|.++..+ ++ ...+.. +.+.+....|||||+.|+..+. +|...||.+ .++.... +..+
T Consensus 267 y~~d~~~-------------~~-~~~lt~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g- 327 (427)
T PRK02889 267 YTVNADG-------------SG-LRRLTQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG- 327 (427)
T ss_pred EEEECCC-------------CC-cEECCC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-
Confidence 8775221 11 222222 4555677899999998886654 467777765 4443222 2222
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecC
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVS 421 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d 421 (1134)
.....++|+|++ +.++..+ .+.+|+..+++......++...-..+++ ++.++..+.+
T Consensus 328 --~~~~~~~~SpDG----~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 328 --SYNTSPRISPDG----KLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred --CCcCceEECCCC----CEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec
Confidence 234467899998 6655322 5889998877655443332222246666 6666654433
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=3.5e-07 Score=109.79 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=112.4
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEc---CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE-eeeCCe-
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV-GTRRGV- 279 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~s---DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs-G~~dg~- 279 (1134)
+.+...+.+..|+|+|+.++.++. +..+++|++.......... ..+.+.+.+|||||+.||. .+.+|.
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-------~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-------FPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-------CCCcccCcEECCCCCEEEEEEecCCCc
Confidence 345667899999999998888763 3578888876543222111 1234567899999998764 455665
Q ss_pred -EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC-C--cEEEEecCCCeeEEEe
Q 001165 280 -VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 280 -V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D-g--~I~vWdv~~~~l~~tl 355 (1134)
|.+||++ +++. ..+.. +.+...+.+|||||+.|+..+.. | .|.+||+.++.... +
T Consensus 271 ~Iy~~d~~---------------~~~~-~~Lt~----~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-l 329 (435)
T PRK05137 271 DIYTMDLR---------------SGTT-TRLTD----SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-I 329 (435)
T ss_pred eEEEEECC---------------CCce-EEccC----CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-e
Confidence 5555665 3322 22222 55667789999999998877743 3 47788887765433 3
Q ss_pred ccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEee
Q 001165 356 RQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNR 418 (1134)
Q Consensus 356 ~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~ 418 (1134)
..+ ...+..+.|+|++ +.++... .+.+|++.++.......++...-..+++ ++.++..
T Consensus 330 t~~-~~~~~~~~~SpdG----~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 330 SFG-GGRYSTPVWSPRG----DLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred ecC-CCcccCeEECCCC----CEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEE
Confidence 222 3346678899998 5554321 6778888665543332232222256677 6766543
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.3e-06 Score=98.39 Aligned_cols=309 Identities=15% Similarity=0.159 Sum_probs=175.8
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe-----CCC-----EE
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-----SSL-----YL 91 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-----~dg-----~l 91 (1134)
..+.++|++|++||..++..+.|.+.....+.++... . .++++.|||-|.+|.+=. .++ .+
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--------~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--------K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--------c-eeeeeeecccccccccccccccccCCCCCCCce
Confidence 3467889999999999999999999863333333321 1 468899999999887622 222 26
Q ss_pred EEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccc
Q 001165 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (1134)
Q Consensus 92 ~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~ 171 (1134)
++|++++....-.+....+.+ ....|+.++ .++.-...+.++.+.-++. ....
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~~---W~~qfs~dE-------------------sl~arlv~nev~f~~~~~f-~~~~---- 160 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQNG---WVPQFSIDE-------------------SLAARLVSNEVQFYDLGSF-KTIQ---- 160 (566)
T ss_pred eeeeeccceehhheehhhhcC---cccccccch-------------------hhhhhhhcceEEEEecCCc-ccee----
Confidence 688887621111111011100 122222222 1222122344444432221 0000
Q ss_pred cCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC--eEEEE-----EcCCeEEEEEeccCCccc
Q 001165 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR--LLFVL-----YSNGQLMSCSVSKKGLKL 244 (1134)
Q Consensus 172 ~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~--~la~~-----~sDG~v~l~~~~~~~~~~ 244 (1134)
..-+...|...++||.+. .+|+- +.-+.+++|........+
T Consensus 161 --------------------------------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 161 --------------------------------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred --------------------------------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 011244566666776632 22221 122456666655222211
Q ss_pred cceecccccCCCCCeEEEEECCCCCE-EEEee--eCC---------eEEEEeccccccceeeeeeeccCcceEEEEeecc
Q 001165 245 AEFIKIDKELGSGDAVCASIAPEQQI-LAVGT--RRG---------VVELYDLAESASLIRTVSLYDWGMREVYYTFCRY 312 (1134)
Q Consensus 245 ~~~~~~~~~~~~~~~~~va~spdg~l-lAsG~--~dg---------~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~ 312 (1134)
...... ....+-..+.||+.|.- |+.++ -|. ++.+++++ ..+..-.+.
T Consensus 209 ~~a~ks---FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~---------------g~s~~V~L~-- 268 (566)
T KOG2315|consen 209 PVANKS---FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ---------------GESVSVPLL-- 268 (566)
T ss_pred hhhhcc---ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec---------------CceEEEecC--
Confidence 111110 01234456788988873 33222 233 23333333 122222222
Q ss_pred cCCCCcCeEEEEECCCCCEEEEEE--CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------e
Q 001165 313 SMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------S 384 (1134)
Q Consensus 313 ~~~h~g~V~~l~fSPDG~~Lasg~--~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~ 384 (1134)
..|+|.++.|+|+|+-+++.. .=-.+.|+|..+. ++..+. .++-+.+-|+|.| +.++-++ .
T Consensus 269 ---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~---egpRN~~~fnp~g----~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 269 ---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFP---EGPRNTAFFNPHG----NIILLAGFGNLPGD 337 (566)
T ss_pred ---CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCC---CCCccceEECCCC----CEEEEeecCCCCCc
Confidence 479999999999999777654 4468999999865 444443 3456788999998 6655433 8
Q ss_pred eEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeec------CCcEEeeee
Q 001165 385 MMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGV------SGMTYARQV 429 (1134)
Q Consensus 385 i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~------d~ti~~w~l 429 (1134)
+-+||..+.+++.........+..++| |+.++|+.. |+.+++|++
T Consensus 338 mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred eEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 889999999999888777777888999 888877653 677888874
No 229
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.88 E-value=5.2e-07 Score=98.79 Aligned_cols=232 Identities=13% Similarity=0.130 Sum_probs=151.6
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC--CeEEEEec
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR--GVVELYDL 285 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d--g~V~lwd~ 285 (1134)
...+..+.|+.+...+.+++.||.- +++.+.+..- .... .+...+.-.-||. .++|..+.+ ...++++.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk-~~~~~~~~k~--~~~~----~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYK-IFSCSPFEKC--FSKD----TEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred CcceeeeeeccceeEEEccCCCcee-EEecCchHHh--hccc----CCCeEEEEeeccc--ceeEEEecCCCceEEEEEc
Confidence 3456677799999999999999963 4444332210 0000 0111223334544 466655544 34788887
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC--CCCce
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI--SLSSI 363 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h--~~~~V 363 (1134)
+ .+..+-.+. -..+|.+|.+.. ++|++.=++ .|.|+|+..-++++|+..- +..++
T Consensus 76 K---------------k~~~ICe~~-----fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 76 K---------------KKTTICEIF-----FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred c---------------cCceEEEEe-----cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 7 333332221 245788888865 577777765 4999999999999998753 12234
Q ss_pred eeeEEcCCCCCCcceEEE-----cceeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcE-EeeeeeeCCC
Q 001165 364 SSPIVKPNQDCKYEPLMS-----GTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMT-YARQVIYGED 434 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~s-----gs~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti-~~w~l~~~~~ 434 (1134)
.++.+++.+ .+++- .+.+.+||..+-+.......|.+.+ ++|++ |..++|+|.-||+ +++.+..|+
T Consensus 133 ~AlS~n~~n----~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~- 207 (391)
T KOG2110|consen 133 CALSPNNAN----CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ- 207 (391)
T ss_pred EeeccCCCC----ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-
Confidence 444444433 34442 2289999999989888889999998 66666 9999999999986 666654443
Q ss_pred eEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 435 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 435 ~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
+++-++.. ++ .-.|.+++||||+++|++.|..++| +|.+...
T Consensus 208 kl~eFRRG--------------~~---~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 208 KLYEFRRG--------------TY---PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EeeeeeCC--------------ce---eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 32222100 00 2248999999999999999999999 9988654
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.87 E-value=3.6e-07 Score=98.14 Aligned_cols=272 Identities=16% Similarity=0.180 Sum_probs=157.0
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE-EEeeeCCeEEEEeccccccce
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLI 292 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll-AsG~~dg~V~lwd~~~~~~~~ 292 (1134)
..|||+|+++|+...- ++.+-+.......+.- .-.+.+.-+.|+.|.-.+ .....++.|.+|++.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-------~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~------ 79 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-------LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV------ 79 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHH-------HHHHHhhheeeeccceeeeeeeeccceEEEEEee------
Confidence 5789999999998654 6665444332221110 001455567777776654 455788999999998
Q ss_pred eeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCE-EEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCC
Q 001165 293 RTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 371 (1134)
Q Consensus 293 ~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~-Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~ 371 (1134)
..+-...+.. ...++.+++|||||+. |.+..-|-.|.||++.+..... + .|-...+..++|+|+
T Consensus 80 ---------Qpew~ckIde----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~-~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 80 ---------QPEWYCKIDE----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-L-PHPKTNVKGYAFHPD 144 (447)
T ss_pred ---------cceeEEEecc----CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-e-cccccCceeEEECCC
Confidence 2333222222 4567899999999965 5556678899999998755332 2 233456788999999
Q ss_pred CCCCcceEEEcc-----------------------------eeEEEeCCCceEEEEecC--------C-CccE--EEEec
Q 001165 372 QDCKYEPLMSGT-----------------------------SMMQWDEYGYRLYAIEEG--------S-SERV--LIFSF 411 (1134)
Q Consensus 372 ~~~~~~~l~sgs-----------------------------~i~~W~~~~~~l~~~~~~--------h-~~~v--~~~s~ 411 (1134)
+ ++.+-.+ +-.-|.+++.-+..-..- | .-++ +..+|
T Consensus 145 g----~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP 220 (447)
T KOG4497|consen 145 G----QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP 220 (447)
T ss_pred C----ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc
Confidence 8 3221111 345677777654332110 1 1223 67788
Q ss_pred -CCEEEeeecCCcEEeeeeeeC---CCeEEEeecCC-----------------------Cc-cc---cc-----------
Q 001165 412 -GKCCLNRGVSGMTYARQVIYG---EDRLLVVQSED-----------------------TD-EL---KI----------- 449 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~l~~~---~~~l~l~~g~~-----------------------~~-~~---~w----------- 449 (1134)
++.++.|+.|+++++-+-.+= ..-+-+..-++ +| +. .|
T Consensus 221 ~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~ 300 (447)
T KOG4497|consen 221 CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM 300 (447)
T ss_pred ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence 889999999998876431110 00000000000 00 00 11
Q ss_pred -----cccccceeeccCCCceEEEEEcCCCCEEEEEeCC--CeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCC--EE
Q 001165 450 -----LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH--GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--II 519 (1134)
Q Consensus 450 -----~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~d--G~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~--~l 519 (1134)
+..+.|...-+..-.+.-++||+|..|+|+-.+. ..+ +||++..+ ++.-..|. -.++.+.|.+. .+
T Consensus 301 ~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~--l~avLiQk--~piraf~WdP~~prL 376 (447)
T KOG4497|consen 301 TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK--LHAVLIQK--HPIRAFEWDPGRPRL 376 (447)
T ss_pred cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh--hhhhhhhc--cceeEEEeCCCCceE
Confidence 1111222222223347789999999999987542 344 89987653 44333332 35888999865 45
Q ss_pred EEE
Q 001165 520 VVC 522 (1134)
Q Consensus 520 v~~ 522 (1134)
++|
T Consensus 377 ~vc 379 (447)
T KOG4497|consen 377 VVC 379 (447)
T ss_pred EEE
Confidence 655
No 231
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=6.5e-06 Score=90.74 Aligned_cols=267 Identities=16% Similarity=0.224 Sum_probs=148.3
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcC---CeEEEEEeccCC-ccccceecccccCCCCCeEEEEECCCCCEEEEeee-CCeE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKG-LKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-RGVV 280 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sD---G~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-dg~V 280 (1134)
...+..+-|+++|+.+.+.++-.+ |.+..+.++... ......... ......+.++++++|+++.++.. .|.|
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~---~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT---LPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---cCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 445566778999999887777655 667777776421 111101110 11133378999999999998875 5899
Q ss_pred EEEeccccccceeeeeeec-cCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE--CCCcEEEEecCCCeeEEEecc
Q 001165 281 ELYDLAESASLIRTVSLYD-WGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~-~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~--~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
.++.+++.+.........+ .+.+ + .....+.-+.+..++|||++|++.+ .| .|.++++..+.+...-..
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~-p------~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSG-P------HERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPA 185 (346)
T ss_pred EEEEcccCCccccceeeeecCCCC-C------CccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccc
Confidence 9999986654433222111 0000 0 0000122288999999999999985 44 688999986664322110
Q ss_pred --CCCCceeeeEEcCCCCCCcceEEE--cceeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCC
Q 001165 358 --ISLSSISSPIVKPNQDCKYEPLMS--GTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 358 --h~~~~V~sv~~sp~~~~~~~~l~s--gs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
...++-..++|+|++ +.-++++ .+++.+|..++. .
T Consensus 186 ~v~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~---------------------------------------~ 224 (346)
T COG2706 186 EVKPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPA---------------------------------------V 224 (346)
T ss_pred ccCCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCC---------------------------------------C
Confidence 012234567777776 2222222 114444433221 0
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC-eE-EEEc--cCCcEEEeCCccceeeeEE
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG-LI-LYDI--RQKKWRVFGDITQEQKIQS 509 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG-~i-lwd~--~sg~Wk~F~~~~~e~~~~v 509 (1134)
.++-..+ ....+|..|.+.+| ...+.+||||++|.++.+.- .| +|.+ .+++...++...-|.. .-
T Consensus 225 g~~~~lQ---------~i~tlP~dF~g~~~-~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~-~P 293 (346)
T COG2706 225 GKFEELQ---------TIDTLPEDFTGTNW-AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ-FP 293 (346)
T ss_pred ceEEEee---------eeccCccccCCCCc-eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc-CC
Confidence 0000000 01124667777776 45788999999999775522 33 6665 4565544443332321 12
Q ss_pred E--EEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 510 K--GLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 510 ~--gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+ .+.-.+++|++++ ..++.|.+|.++
T Consensus 294 R~F~i~~~g~~Liaa~----q~sd~i~vf~~d 321 (346)
T COG2706 294 RDFNINPSGRFLIAAN----QKSDNITVFERD 321 (346)
T ss_pred ccceeCCCCCEEEEEc----cCCCcEEEEEEc
Confidence 2 3444578888872 344569999995
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.86 E-value=1.4e-06 Score=93.78 Aligned_cols=179 Identities=17% Similarity=0.267 Sum_probs=114.2
Q ss_pred CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecC--CCCCCCcceee
Q 001165 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIG--GKQPSGLFFIK 117 (1134)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~--~~~~~~~~~~s 117 (1134)
+.|.|||=.+. ..+.... -.+++.+|.+++| .|++... +.|.||+.....+.+..- ...|.|
T Consensus 75 NkviIWDD~k~-~~i~el~-------f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkG----- 138 (346)
T KOG2111|consen 75 NKVIIWDDLKE-RCIIELS-------FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKG----- 138 (346)
T ss_pred ceEEEEecccC-cEEEEEE-------eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCc-----
Confidence 36999995432 2233322 2468999999998 6666664 579999986543333310 011111
Q ss_pred EEEeeceeeccccccceEEEeeeC-CCeEEE--EecCCcEEEEecCCccccceeccccCCCccccccccccCCCcccccc
Q 001165 118 ISLVLNEQLPFAEKGLSVSNIVSD-NKHMLL--GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (1134)
Q Consensus 118 ~~~~~~~~~~~~~~~~~V~~~s~d-~~~llv--~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~ 194 (1134)
.+++.+. +..+++ |...|.|++.+.......+
T Consensus 139 -----------------lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~---------------------------- 173 (346)
T KOG2111|consen 139 -----------------LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA---------------------------- 173 (346)
T ss_pred -----------------eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC----------------------------
Confidence 2233332 222232 3345777765443221110
Q ss_pred CCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCe-EEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE
Q 001165 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV 273 (1134)
Q Consensus 195 ~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs 273 (1134)
......|++.|.+|+.+.+|..+|+++..|+ |++|+...+...+. .... ....++.|++|||+.++||+
T Consensus 174 ------p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E--~RRG--~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 174 ------PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE--LRRG--VDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred ------ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee--eecC--CchheEEEEEeCCCccEEEE
Confidence 0134579999999999999999999999999 57888765543221 1110 12367899999999999999
Q ss_pred eeeCCeEEEEeccccc
Q 001165 274 GTRRGVVELYDLAESA 289 (1134)
Q Consensus 274 G~~dg~V~lwd~~~~~ 289 (1134)
+|.-||++||.+.+..
T Consensus 244 sSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDTE 259 (346)
T ss_pred EcCCCeEEEEEeecCC
Confidence 9999999999998643
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.85 E-value=5.7e-09 Score=116.28 Aligned_cols=225 Identities=15% Similarity=0.184 Sum_probs=163.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
.....+.++.+|+.++.|+.-|.|..+|.. ++.+...+. -...|.++.|-.+.+++|++-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~---------------t~~L~~Ei~-----v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWV---------------TKKLHFEIN-----VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecc---------------cceeeeeee-----hhhhhhhhhhhcchHHHHhhh
Confidence 456788999999999999999999999998 666665543 246799999999999999986
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF 411 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~ 411 (1134)
. ..+.|+|-.|-. ++.++.+ ..|..+.|-|.. -.|++++ -...-|+..|+++..+....+.+ +.-.|
T Consensus 190 K-~y~yvYD~~GtE-lHClk~~--~~v~rLeFLPyH----fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 K-KYVYVYDNNGTE-LHCLKRH--IRVARLEFLPYH----FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred h-ceEEEecCCCcE-Eeehhhc--Cchhhhcccchh----heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 6 688999987754 5566664 478899999886 5566655 55566888888877664434444 55556
Q ss_pred -CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 412 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
.-.+-.|...|++.+|.-...+. ...++.|.+||+++|+.++|+|+|++|.|..+ +||
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skeP--------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEP--------------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcch--------------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 45566888999999998543332 34677899999999999999999999999999 999
Q ss_pred ccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 490 IRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 490 ~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
++.-. .. .+....+....+...+..++++++ ...+.+|.-
T Consensus 322 lR~~~-ql---~t~~tp~~a~~ls~SqkglLA~~~-----G~~v~iw~d 361 (545)
T KOG1272|consen 322 LRNFY-QL---HTYRTPHPASNLSLSQKGLLALSY-----GDHVQIWKD 361 (545)
T ss_pred ecccc-cc---ceeecCCCccccccccccceeeec-----CCeeeeehh
Confidence 96532 11 111112233456666666776633 345677743
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=4e-07 Score=109.20 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=110.8
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcC---CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe-eeCC--e
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG-TRRG--V 279 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sD---G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG-~~dg--~ 279 (1134)
.+...+.+..|+|+++.++.++.+ ..+++|++........... .+...+.+|||||+.|+.. +.+| .
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-------~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-------RGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-------CCCccCceECCCCCEEEEEEeCCCCce
Confidence 345567889999999998887633 3578887754332211111 1233478999999987754 4555 5
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CCc--EEEEecCCCeeEEEec
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SRG--LTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg~--I~vWdv~~~~l~~tl~ 356 (1134)
|.+||++ +++. ..+.. +.+.....+|||||+.|+.++. +|. |.++++.++.... +.
T Consensus 274 Iy~~d~~---------------~g~~-~~lt~----~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt 332 (433)
T PRK04922 274 IYVMDLG---------------SRQL-TRLTN----HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT 332 (433)
T ss_pred EEEEECC---------------CCCe-EECcc----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee
Confidence 8888887 3332 22222 5555678899999999887764 455 5555666654322 22
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEc--c----eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeee
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSG--T----SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 419 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sg--s----~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s 419 (1134)
.+ ......++|+|++ +.++-. . .+.+|+..+++......++...-..+++ ++.++..+
T Consensus 333 ~~-g~~~~~~~~SpDG----~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 333 FQ-GNYNARASVSPDG----KKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred cC-CCCccCEEECCCC----CEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEE
Confidence 22 1234578999998 555421 1 6889999887765443332211245666 77665443
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.85 E-value=6.4e-06 Score=95.71 Aligned_cols=272 Identities=12% Similarity=0.122 Sum_probs=151.2
Q ss_pred eeEEEeecCeEEEEEcC-----CeEEEeecCCcceeEEEeecChhhHHhhcc-eeEEEEcCCceEEEEEeC-CCEEEEEE
Q 001165 23 QIIYFKVNNGLLLIASP-----CHIELWSSSQHKVRLGKYKRDSESVQREGE-NLQAVWSPDTKLIAVVTS-SLYLHIFK 95 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~-----~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~-~~~v~wSPDg~~Lav~t~-dg~l~lw~ 95 (1134)
.-++++|++++|-++.. +.|..|.++.....+....+.. ..|. -..++.+|||++|+++.. +|++.+|+
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~----~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP----SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE----ESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec----cCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 34778999886655432 4788888863212222222211 1222 357999999999999974 78999999
Q ss_pred EEecCcceecCCCCCCCcceeeEEEeeceeecc--ccccceEEEeeeCCCeEEEEec-CCcEEEEecCCccccceecccc
Q 001165 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPF--AEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHS 172 (1134)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~~~~~~~~~~~~ 172 (1134)
++........ ...+.....+..+. .+....-..+.+|++.+++... ...|..+.++..... +..
T Consensus 116 l~~~g~l~~~---------~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~--- 182 (345)
T PF10282_consen 116 LDDDGSLGEV---------VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTP--- 182 (345)
T ss_dssp ECTTSEEEEE---------EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEE---
T ss_pred ccCCccccee---------eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEE---
Confidence 9764211110 00000000000000 0011122356778888877653 447888888765421 110
Q ss_pred CCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEc-CCeEEEEEec--cCCccccceec
Q 001165 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVS--KKGLKLAEFIK 249 (1134)
Q Consensus 173 ~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~--~~~~~~~~~~~ 249 (1134)
... ........-..++|+|+++.+.++.. ++++..+++. .......+.+.
T Consensus 183 ------~~~---------------------~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 183 ------VDS---------------------IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ------EEE---------------------EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ------eec---------------------cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 000 01233456788999999998877764 5678888877 22221111111
Q ss_pred --ccccCCCCCeEEEEECCCCCEEEEee-eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEEC
Q 001165 250 --IDKELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWT 326 (1134)
Q Consensus 250 --~~~~~~~~~~~~va~spdg~llAsG~-~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fS 326 (1134)
+..+.+...+..++++|||++|-++. .+++|.+|+++..++....+. .+.. ....-..++++
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~-----------~~~~----~G~~Pr~~~~s 300 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ-----------TVPT----GGKFPRHFAFS 300 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE-----------EEEE----SSSSEEEEEE-
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE-----------EEeC----CCCCccEEEEe
Confidence 11222334678899999999866654 567999999964433222111 1110 11236889999
Q ss_pred CCCCEEEEEE-CCCcEEEEec--CCCeeEE
Q 001165 327 PDNSAFAVGW-KSRGLTVWSV--SGCRLMS 353 (1134)
Q Consensus 327 PDG~~Lasg~-~Dg~I~vWdv--~~~~l~~ 353 (1134)
|||++|+++. .++.|.+|++ .++.+..
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 9999999887 4579999977 4666543
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=4.4e-07 Score=104.90 Aligned_cols=170 Identities=16% Similarity=0.120 Sum_probs=132.6
Q ss_pred cCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEE--------------------CCCCCEEEEeee
Q 001165 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI--------------------APEQQILAVGTR 276 (1134)
Q Consensus 217 sp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~--------------------spdg~llAsG~~ 276 (1134)
+|.+.+||..+.||++++|+.......+ +..+... -.+..+|.+| +.+-..+|-|..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~--e~~p~~~-~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQ--EFAPIAS-LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeee--eeccchh-ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 4567789999999999999986533221 1111000 0122223222 223457889999
Q ss_pred CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 277 RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 277 dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
.|.|.+|++. .|+..+.+.+ ..|.+.|+++.|+.+-.+|-|++.|+.+..|+...++.+|...
T Consensus 79 ~g~v~~ys~~---------------~g~it~~~st--~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 79 QGSVLLYSVA---------------GGEITAKLST--DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred CccEEEEEec---------------CCeEEEEEec--CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence 9999999998 6777776642 3599999999999999999999999999999999999998887
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEecCCCccEEEEec
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF 411 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~~~h~~~v~~~s~ 411 (1134)
.. ...+.++..+||+ ..+++++ .+++|+.++.+++..+.||.+.|-.++|
T Consensus 142 ~~-~~~~~sl~is~D~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 142 EQ-KPLVSSLCISPDG----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred cC-CCccceEEEcCCC----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 75 6789999999998 8888877 9999999999999999999999966665
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.82 E-value=8.8e-07 Score=103.16 Aligned_cols=293 Identities=13% Similarity=0.078 Sum_probs=147.8
Q ss_pred EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe-CCCEEEEEEEEecCcc
Q 001165 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (1134)
Q Consensus 25 v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~lw~l~~~~~~ 102 (1134)
+.|||||+++.+++ |+.|.++|.... ..+...+- -..-..+++||||++++++. ..+.+.++|..+.. .
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~-------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~ 112 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKV-------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-P 112 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE--------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---E
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEec-------CCCcceEEEcCCCCEEEEEecCCCceeEecccccc-c
Confidence 67999999766554 679999999744 33333221 12347899999999999875 57899999975421 1
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceEEEe--eeCCCeEEEEecC-CcEEEEecCCccccceeccccCCCcccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~--s~d~~~llv~t~d-g~v~~~~wd~~~~~~~~~~~~~~~~~~i 179 (1134)
+. .+ +.+..........+.++ ++.+...+++..+ |.+..++.... .... +
T Consensus 113 v~------------~I---~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--~~~~----------~ 165 (369)
T PF02239_consen 113 VK------------TI---PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--KNLK----------V 165 (369)
T ss_dssp EE------------EE---E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--SCEE----------E
T ss_pred ee------------ec---ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--cccc----------e
Confidence 11 00 01111111112234444 3455666666665 56665544332 1110 0
Q ss_pred ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE-EcCCeEEEEEeccCCcccc-------ceeccc
Q 001165 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL-YSNGQLMSCSVSKKGLKLA-------EFIKID 251 (1134)
Q Consensus 180 ~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~-~sDG~v~l~~~~~~~~~~~-------~~~~~~ 251 (1134)
. .........+..|+|+++++.++ ..+..+.+++......... ......
T Consensus 166 ~-----------------------~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 166 T-----------------------TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp E-----------------------EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred e-----------------------eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccc
Confidence 0 01112344577899999987664 4556677776543221100 000000
Q ss_pred ccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCE
Q 001165 252 KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSA 331 (1134)
Q Consensus 252 ~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~ 331 (1134)
.+.|.....--+.+..+....+.-..+.+.+|+.. ..+.++++.. ..++ .-++-+||+++
T Consensus 223 ~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~---------------~wkvv~~I~~----~G~g-lFi~thP~s~~ 282 (369)
T PF02239_consen 223 NFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY---------------AWKVVKTIPT----QGGG-LFIKTHPDSRY 282 (369)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT---------------BTSEEEEEE-----SSSS---EE--TT-SE
T ss_pred cccCCCcceEEeeccccceecccccCCccccchhh---------------cCeEEEEEEC----CCCc-ceeecCCCCcc
Confidence 11111111111122223332222223344455555 5556666654 4445 77888999999
Q ss_pred EEEE----ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEe
Q 001165 332 FAVG----WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 332 Lasg----~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~ 399 (1134)
+.+. .+.++|.|+|..+.....++.......+..+.|+++|. +.++|.- .+.++|..+.++....
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 9998 44589999999998888887643223488999999983 3344321 5777888777776554
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=5.8e-08 Score=110.02 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=100.6
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V 280 (1134)
.+.+|.+.|++++|+.+|.++++++.|-++.+|+.-...+. ..+.. .|...|.|+.|=| ..+++++|..|..|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~T---gHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSIST---GHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeec---ccccceeEEeeeccCCCeEEEeccCcceE
Confidence 57899999999999999999999999999999998643322 22222 2457899999999 46789999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CEEEEEECCCcEEEEecCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~Lasg~~Dg~I~vWdv~~ 348 (1134)
+|||++...+-.. +.+..+..+.+. .|+..|..|+-.|+| +.+-++++||+|+-+|+..
T Consensus 120 ~lfdl~~~~~~~~-----d~~~~~~~~~~~----cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGM-----DHGMEETTRCWS----CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEeccccccccc-----ccCccchhhhhh----hhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999985331100 000111222222 389999999999999 8999999999999999964
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=5.5e-08 Score=109.25 Aligned_cols=306 Identities=10% Similarity=0.041 Sum_probs=184.1
Q ss_pred CceeEEEeecCeEEEEEcCC-eEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcC--CceEEEEEeCCCEEEEEEEE
Q 001165 21 SQQIIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQ 97 (1134)
Q Consensus 21 ~~~iv~fS~dg~llAs~s~~-~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP--Dg~~Lav~t~dg~l~lw~l~ 97 (1134)
....|.|+..|..+++++|+ .|.+||.......+... + .|.-.+.+..|=| +.+.|++.+.||.+++=.+.
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-----S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-----S-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcccccc-----c-ccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 35668899999999999875 89999996332222111 1 0112234566766 55789999999999887775
Q ss_pred ecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeC-CCeEEEEecCCcEEEEecCCccccceeccccCC
Q 001165 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (1134)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d-~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~ 174 (1134)
..++..-. ..++.+.+.| .++-|+ ...+++++.|+.+..++.........
T Consensus 218 ~t~~~e~t--------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~------- 270 (559)
T KOG1334|consen 218 ETGYVENT--------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK------- 270 (559)
T ss_pred cccceecc--------------------eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce-------
Confidence 43211100 0011111122 233332 35688888888887654332211100
Q ss_pred CccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccce----ec
Q 001165 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEF----IK 249 (1134)
Q Consensus 175 ~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~----~~ 249 (1134)
.. + . ..-........+|+..|.. +.++++..|--+.+++..........+ ..
T Consensus 271 ----~~----c-------r--------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~ 327 (559)
T KOG1334|consen 271 ----FV----C-------R--------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFC 327 (559)
T ss_pred ----ee----e-------e--------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcC
Confidence 00 0 0 0001112456788888876 589999888888887765432221111 11
Q ss_pred cccc--CCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccc-ceeeeeeeccCcceEEEE-eecccCCCCc--CeEEE
Q 001165 250 IDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDWGMREVYYT-FCRYSMDDTG--PVSCI 323 (1134)
Q Consensus 250 ~~~~--~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~-~~~~l~l~~~~~~~~l~~-l~~~~~~h~g--~V~~l 323 (1134)
+... .....|+|++|++++.-+.+...|-.|.+++-.-.-+ ..-...+ .....+. ++| |.. .|..+
T Consensus 328 p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~----~~~~~k~vYKG----HrN~~TVKgV 399 (559)
T KOG1334|consen 328 PHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP----REQYVKRVYKG----HRNSRTVKGV 399 (559)
T ss_pred CccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc----hhhccchhhcc----ccccccccee
Confidence 1000 1235689999999888777778899999995431111 0000000 0011222 444 753 47777
Q ss_pred EE-CCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceE
Q 001165 324 AW-TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL 395 (1134)
Q Consensus 324 ~f-SPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l 395 (1134)
-| -|...+++||++.|.|.+|+-.+++++.-+++.+ .-|+++.-+|.. ..|+|++ .|++|.+.+.+.
T Consensus 400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr-~VVNCLEpHP~~----PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR-HVVNCLEPHPHL----PVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred eeccCccceEEecCccceEEEEecchhHHHHHhhccc-ceEeccCCCCCC----chhhccCCccceeeecCCcccc
Confidence 76 5788999999999999999999999888887742 278999888886 6777655 899999866443
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.79 E-value=1.1e-08 Score=114.10 Aligned_cols=225 Identities=15% Similarity=0.141 Sum_probs=166.3
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
...-..+.|+.+|+.++.++..|.+..++............ ...+..+.|=++.+++|++- ..-+.|||-.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-------~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~- 199 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-------METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN- 199 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-------hhhhhhhhhhcchHHHHhhh-hceEEEecCC-
Confidence 34457899999999999999999999887754332211111 24566778888888999864 5578899865
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
|..++.++. ...|..+.|-|---.|++++..|-++--|+..|+++..+... .+.+..+.
T Consensus 200 ---------------GtElHClk~-----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~ 258 (545)
T KOG1272|consen 200 ---------------GTELHCLKR-----HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMK 258 (545)
T ss_pred ---------------CcEEeehhh-----cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhh
Confidence 555666654 467999999999999999999999999999999999888754 45566666
Q ss_pred EcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeec
Q 001165 368 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 441 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g 441 (1134)
-+|-+ ..+-.|- ++-+|++...+.++..-.|.+.| +++.. |+.++|.|.|..+++||+.....
T Consensus 259 qNP~N----aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q------- 327 (545)
T KOG1272|consen 259 QNPYN----AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ------- 327 (545)
T ss_pred cCCcc----ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-------
Confidence 66765 3343332 99999999988877777888888 66666 99999999999999999876543
Q ss_pred CCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 442 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 442 ~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
+.++.. .-+...++||..|. ||. |..-.+ +|.
T Consensus 328 -------------l~t~~t-p~~a~~ls~Sqkgl-LA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 328 -------------LHTYRT-PHPASNLSLSQKGL-LAL-SYGDHVQIWK 360 (545)
T ss_pred -------------cceeec-CCCccccccccccc-eee-ecCCeeeeeh
Confidence 333333 34677899997664 443 333445 774
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=4e-08 Score=110.30 Aligned_cols=286 Identities=12% Similarity=0.118 Sum_probs=185.4
Q ss_pred cccccceEEEee--eCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcc------
Q 001165 128 FAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF------ 199 (1134)
Q Consensus 128 ~~~~~~~V~~~s--~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~------ 199 (1134)
+..+.+.|..+. ..|+.+++++.|-.+.+|.|-......--..+|-..++...++|++.+..+.+.+.++..
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 334455554444 457888888888899999997543211111233334445568888777665544443321
Q ss_pred ------cccccCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccc-eecccccCCCC---CeEEEEECCCC
Q 001165 200 ------VSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAE-FIKIDKELGSG---DAVCASIAPEQ 268 (1134)
Q Consensus 200 ------~~~~~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~-~~~~~~~~~~~---~~~~va~spdg 268 (1134)
...-+..|.++|..++.-|+. ..|.+++.||.+.-+++....+...- +.. .+.. ....++++|..
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~----~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE----ADEKERVGLYTIAVDPRN 293 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec----cCCccceeeeeEecCCCC
Confidence 123345788999999999986 57888889998887777654432211 111 1111 35688999977
Q ss_pred C-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc--cCCCCcCeEEEEECCCCCEEEEEECCCcEEEEe
Q 001165 269 Q-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY--SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 269 ~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~--~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
. .+|+|+.|.-+++||........ ....+.+++.. .....-.|+|++||.+|.-|.++..|-.|.++.
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~---------~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEE---------NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred ccccccCChhhhhhhhcccchhhcc---------ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 6 89999999999999987321100 00011121110 001234589999999999888888888999996
Q ss_pred cCC--C----------eeEE-EeccCCCC-ceeeeEE-cCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEE
Q 001165 346 VSG--C----------RLMS-TIRQISLS-SISSPIV-KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL 407 (1134)
Q Consensus 346 v~~--~----------~l~~-tl~~h~~~-~V~sv~~-sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~ 407 (1134)
-.- + ..+. ..+||..+ .|..+-| .|.. ++++||+ .|.+|+-.+++++....+...-|-
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs----EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS----EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc----ceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 421 1 2222 26676332 3555554 4555 8999998 899999999999888877555556
Q ss_pred EEec---CCEEEeeecCCcEEeeeee
Q 001165 408 IFSF---GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 408 ~~s~---~k~l~S~s~d~ti~~w~l~ 430 (1134)
++.| ...++|.|.|..|++|.-.
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCC
Confidence 7766 6688999999999999753
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.79 E-value=4.4e-05 Score=88.72 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=98.4
Q ss_pred EEeeeCCCeEEEEec----CCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccE
Q 001165 136 SNIVSDNKHMLLGLS----DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1134)
Q Consensus 136 ~~~s~d~~~llv~t~----dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V 211 (1134)
.+++++++.++++.. +|.|..+.++.+. +.+.. +.. ........
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~---------~~~----------------------~~~~g~~p 89 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTL---------LNS----------------------VPSGGSSP 89 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEE---------EEE----------------------EEESSSCE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEE---------eee----------------------eccCCCCc
Confidence 466778888998877 3578777776542 11110 000 00123345
Q ss_pred EEEEEcCCCCeEEEEE-cCCeEEEEEeccCC-ccccce-e-----ccc-ccCCCCCeEEEEECCCCCEEEEee-eCCeEE
Q 001165 212 IWLELCLPMRLLFVLY-SNGQLMSCSVSKKG-LKLAEF-I-----KID-KELGSGDAVCASIAPEQQILAVGT-RRGVVE 281 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~-~~~~~~-~-----~~~-~~~~~~~~~~va~spdg~llAsG~-~dg~V~ 281 (1134)
..++++|+++.++++. .+|.+.++.++... ...... . .+. .......+.++.|+|+++.+.+.. ....|.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 6789999999888875 68999999886532 111100 1 000 011235678999999999877654 346899
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVS 347 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~ 347 (1134)
+|+++........ ...+.. .....-..++|+|||+++.+.. .+++|.++++.
T Consensus 170 ~~~~~~~~~~l~~-----------~~~~~~---~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 170 VYDIDDDTGKLTP-----------VDSIKV---PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEE-TTS-TEEE-----------EEEEEC---STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCceEEE-----------eecccc---ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 9999854321110 011110 1233468999999999887765 46889999987
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.78 E-value=6.7e-07 Score=106.75 Aligned_cols=188 Identities=14% Similarity=0.123 Sum_probs=106.6
Q ss_pred ceeEEEEcCCceEEEEEeCC---CEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 69 ENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~d---g~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
.+...+|||||+.||.++.. ..|.+|++..+....... .. + .....++++||+.+
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~--------------------~-~~~~~~~spDg~~l 248 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP--------------------G-MNGAPAFSPDGSKL 248 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC--------------------C-CccceEECCCCCEE
Confidence 46788999999999988754 368888886532111100 00 0 01123577888877
Q ss_pred EEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEE
Q 001165 146 LLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 146 lv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la 224 (1134)
+... .+|...++.|+........ +..+........|+|+++.++
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~-----------------------------------l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTR-----------------------------------LTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEE-----------------------------------CCCCCCCCCCEEECCCCCEEE
Confidence 7544 3444333334432211110 111112233467899999888
Q ss_pred EEEcC-C--eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC---eEEEEeccccccceeeeeee
Q 001165 225 VLYSN-G--QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 225 ~~~sD-G--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg---~V~lwd~~~~~~~~~~l~l~ 298 (1134)
+++.. | .+++++....... .+. .+.......+|+|+|+.|+.++.++ .|.+||+.+
T Consensus 294 ~~s~~~g~~~iy~~d~~~~~~~---~l~----~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~----------- 355 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDADGGEVR---RLT----FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG----------- 355 (417)
T ss_pred EEECCCCCceEEEEECCCCCEE---Eee----cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-----------
Confidence 77653 3 4666655432211 111 1123455789999999999988776 677887762
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcE
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 341 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I 341 (1134)
+.. ..+. ..+.....+|+|||+.|+.++.+++.
T Consensus 356 ----~~~-~~l~-----~~~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 356 ----GGE-RVLT-----DTGLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred ----CCe-EEcc-----CCCCCCCceECCCCCEEEEEEeCCCc
Confidence 211 1111 11223456899999999888776543
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=9.2e-07 Score=106.25 Aligned_cols=237 Identities=12% Similarity=0.106 Sum_probs=122.1
Q ss_pred eEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC-C--EEEEEEEEecCcceecCCCCCCCcceee
Q 001165 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-L--YLHIFKVQITEKSIQIGGKQPSGLFFIK 117 (1134)
Q Consensus 41 ~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d-g--~l~lw~l~~~~~~~~~~~~~~~~~~~~s 117 (1134)
.|.++|.+...... ..+ ..+.+....|||||+.||..+.+ + .|.+|++..+.......
T Consensus 199 ~l~i~d~dG~~~~~--l~~------~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~----------- 259 (448)
T PRK04792 199 QLMIADYDGYNEQM--LLR------SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS----------- 259 (448)
T ss_pred EEEEEeCCCCCceE--eec------CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-----------
Confidence 57777876332211 111 12356789999999999987643 3 36666664432111100
Q ss_pred EEEeeceeeccccccceEEEeeeCCCeEEEE-ecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCC
Q 001165 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (1134)
Q Consensus 118 ~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~-t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~ 196 (1134)
..+.. .-..+++||+.++.. ..+|...++.++.+.....
T Consensus 260 ----------~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----------------------------- 299 (448)
T PRK04792 260 ----------FPGIN-GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----------------------------- 299 (448)
T ss_pred ----------CCCCc-CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------------
Confidence 00000 123577888887764 4566544555553321111
Q ss_pred CcccccccCCCcccEEEEEEcCCCCeEEEEEc-CCeEEE--EEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE
Q 001165 197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMS--CSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV 273 (1134)
Q Consensus 197 ~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s-DG~v~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs 273 (1134)
.+..+.......+|+|+++.++..+. +|...+ ++..+.... .+. +.+ ......+|+|||+.|+.
T Consensus 300 ------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~---~Lt---~~g-~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 300 ------RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS---RLT---FEG-EQNLGGSITPDGRSMIM 366 (448)
T ss_pred ------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EEe---cCC-CCCcCeeECCCCCEEEE
Confidence 01112233456789999998877654 454444 444332211 111 011 12234689999999887
Q ss_pred eee-CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCc---EEEEecCCC
Q 001165 274 GTR-RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGC 349 (1134)
Q Consensus 274 G~~-dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~---I~vWdv~~~ 349 (1134)
.+. ++..+||-++-. +++. ..+.. . ......+|+|||+.|+..+.+++ +.+++..|.
T Consensus 367 ~~~~~g~~~I~~~dl~-------------~g~~-~~lt~----~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 367 VNRTNGKFNIARQDLE-------------TGAM-QVLTS----T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEecCCceEEEEEECC-------------CCCe-EEccC----C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 665 454455443311 2221 11111 1 11223479999998877665433 667777654
Q ss_pred eeEEEeccCCCCceeeeEEcC
Q 001165 350 RLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 350 ~l~~tl~~h~~~~V~sv~~sp 370 (1134)
....+..+ ...+..++|+|
T Consensus 428 -~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 428 -FKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred -ceEECcCC-CCCcCCCccCC
Confidence 34445433 33456666665
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.74 E-value=6.3e-05 Score=87.76 Aligned_cols=283 Identities=16% Similarity=0.126 Sum_probs=151.6
Q ss_pred EEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEee-eCCeEEEEecccccc
Q 001165 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESAS 290 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~-~dg~V~lwd~~~~~~ 290 (1134)
..+.|+||++++.+++.||.+.++++..... ...+.. .....++++||||+++++++ .++++.++|.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~---- 108 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV--VATIKV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE---- 108 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE--EEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT----
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE--EEEEec-----CCCcceEEEcCCCCEEEEEecCCCceeEeccc----
Confidence 3467999999999999999999988865432 112221 25577999999999988776 68999999988
Q ss_pred ceeeeeeeccCcceEEEEeeccc---CCCCcCeEEEEECCCCCEEEEEECC-CcEEEEecCCCe--eEEEeccCCCCcee
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYS---MDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCR--LMSTIRQISLSSIS 364 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~---~~h~g~V~~l~fSPDG~~Lasg~~D-g~I~vWdv~~~~--l~~tl~~h~~~~V~ 364 (1134)
+.+.++++.... ......|..|..+|++..++..-.| +.|.+-|..... ....+.- .....
T Consensus 109 -----------tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~ 175 (369)
T PF02239_consen 109 -----------TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPH 175 (369)
T ss_dssp -----------T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEE
T ss_pred -----------cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--ccccc
Confidence 555555543200 0123468889999999977776665 666666765533 2233322 23456
Q ss_pred eeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEec-C---CCccEEEE-ecCCEEEeeecCCcEEeeeeeeCCCe
Q 001165 365 SPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEE-G---SSERVLIF-SFGKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~-~---h~~~v~~~-s~~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
...|+|++ ++++.+. .+.++|.+++++..... + |..++..+ +|+- -.+|........
T Consensus 176 D~~~dpdg----ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~----------g~vw~~~~~~~~ 241 (369)
T PF02239_consen 176 DGGFDPDG----RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF----------GPVWATSGLGYF 241 (369)
T ss_dssp EEEE-TTS----SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT----------EEEEEEEBSSSS
T ss_pred ccccCccc----ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc----------ceEEeeccccce
Confidence 77889988 7665443 88899999988776542 2 33333322 2211 112322211111
Q ss_pred EEEeecCCC----ccccccccccceeeccCCCceEEEEEcCCCCEEEEE----eCCCeE-EEEccCCcEEEeCCccceee
Q 001165 436 LLVVQSEDT----DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA----GLHGLI-LYDIRQKKWRVFGDITQEQK 506 (1134)
Q Consensus 436 l~l~~g~~~----~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsg----g~dG~i-lwd~~sg~Wk~F~~~~~e~~ 506 (1134)
..-.-|.+. +...|+. ..++.....+ -.+..+||++++.+. ...+.+ ++|..+-+- .........
T Consensus 242 ~~~~ig~~~v~v~d~~~wkv---v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~--~~~i~~~~~ 315 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKV---VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV--VKTITPGPG 315 (369)
T ss_dssp EEEEEE--TTT-STTTBTSE---EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE--EE-HHHHHT
T ss_pred ecccccCCccccchhhcCeE---EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce--eEEEeccCC
Confidence 111111111 1123433 3334444555 578889999999998 445778 999988632 111111111
Q ss_pred eEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCCCC
Q 001165 507 IQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHL 541 (1134)
Q Consensus 507 ~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~~l 541 (1134)
..+.++.|. ++.+.++.+..+ .+|.+|+...+
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~---~~i~v~D~~Tl 349 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGN---GAIVVYDAKTL 349 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--T---TEEEEEETTTT
T ss_pred CcEeccEECCCCCEEEEEEecCC---CEEEEEECCCc
Confidence 225566675 456666655422 28999988643
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.5e-07 Score=106.95 Aligned_cols=212 Identities=17% Similarity=0.149 Sum_probs=137.6
Q ss_pred cCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceee-cccc-ccceEEEeeeCCCeEEEEecCCc
Q 001165 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQL-PFAE-KGLSVSNIVSDNKHMLLGLSDGS 153 (1134)
Q Consensus 76 SPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~-~~~~V~~~s~d~~~llv~t~dg~ 153 (1134)
.|-+.++|..+.||++++|++..+....-..+.......-..+.|...-.. +... .-..+..-+.|...++.|+..|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 355678999999999999999875322222111111111123334311100 0000 00001112234456778888999
Q ss_pred EEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEE
Q 001165 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (1134)
Q Consensus 154 v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~ 233 (1134)
|..++-.+...... .....|.+.|.++..+.+...+.+++.|+++.
T Consensus 82 v~~ys~~~g~it~~----------------------------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 82 VLLYSVAGGEITAK----------------------------------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVV 127 (541)
T ss_pred EEEEEecCCeEEEE----------------------------------EecCCCCCcceeeecccccCceEecCCceeEE
Confidence 88776543221111 01235788899999999999999999999999
Q ss_pred EEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeeccc
Q 001165 234 SCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYS 313 (1134)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~ 313 (1134)
.|+...... .+++ |.....+.++.++|||..+++|+ ++|++||++ +.+.+.+|.|
T Consensus 128 ~~~~~~~~~---~~~~---~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~---------------~kevv~~ftg-- 182 (541)
T KOG4547|consen 128 YILEKEKVI---IRIW---KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIE---------------TKEVVITFTG-- 182 (541)
T ss_pred EEeccccee---eeee---ccCCCccceEEEcCCCCEEEecc--ceEEEEEcc---------------CceEEEEecC--
Confidence 988753221 1222 22345567899999999999875 699999999 8999999998
Q ss_pred CCCCcCeEEEEECCC-----CCE-EEEEECCCcEEEEecCC
Q 001165 314 MDDTGPVSCIAWTPD-----NSA-FAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 314 ~~h~g~V~~l~fSPD-----G~~-Lasg~~Dg~I~vWdv~~ 348 (1134)
|.++|.+++|.-+ |.+ |.++..+..+.+|-+.+
T Consensus 183 --h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 183 --HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999999987 655 45556678899997754
No 247
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=2.8e-06 Score=91.05 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=53.0
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcce-eEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEec
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~ 99 (1134)
++.+.||++||++.|..|.|-..+..-. .+++..-..+ .+-.-..++||||+..||.+.+.|+|++||+...
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD---~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKD---PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCC---CCchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 3468999999999999999998864311 1233221111 1223478999999999999999999999999753
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.3e-06 Score=102.71 Aligned_cols=216 Identities=16% Similarity=0.125 Sum_probs=115.5
Q ss_pred cceeEEEEcCCceEEEEEeCC---CEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCe
Q 001165 68 GENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~d---g~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ 144 (1134)
+.+...+|||||+.||..+.+ ..|.+|++..+....... . .+. .....+++||+.
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~--------------------~g~-~~~~~~SpDG~~ 256 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-F--------------------EGL-NGAPAWSPDGSK 256 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-C--------------------CCC-cCCeEECCCCCE
Confidence 356789999999999887644 247777775432111100 0 000 012357788888
Q ss_pred EEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 145 MLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 145 llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
++... .+|...++.+|........ +..+........|+|+++.+
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-----------------------------------lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-----------------------------------VTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-----------------------------------cccCCCCcCCeEECCCCCEE
Confidence 77543 4554334444433221110 11122233456899999988
Q ss_pred EEEEc-CC--eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC-C--eEEEEeccccccceeeeee
Q 001165 224 FVLYS-NG--QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-G--VVELYDLAESASLIRTVSL 297 (1134)
Q Consensus 224 a~~~s-DG--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-g--~V~lwd~~~~~~~~~~l~l 297 (1134)
+..+. +| .++.++........ +.. .+ ......+|+|+|+.|+..+.+ | .|.+||++
T Consensus 302 ~f~s~~~g~~~iy~~d~~~g~~~~---lt~---~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~----------- 363 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNGGRAER---VTF---VG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ----------- 363 (430)
T ss_pred EEEECCCCCceEEEEECCCCCEEE---eec---CC-CCccceEECCCCCEEEEEEccCCceEEEEEECC-----------
Confidence 77664 34 45555554332211 110 11 122356899999999887653 3 46777776
Q ss_pred eccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC---CcEEEEecCCCeeEEEeccCCCCceeeeEEcC
Q 001165 298 YDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 298 ~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D---g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
+++. +.+. +.+.....+|||||+.++.++.+ ..+.++++.+.. ...+..+ ...+..++|+|
T Consensus 364 ----tg~~-~~lt-----~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~-~g~~~~p~ws~ 427 (430)
T PRK00178 364 ----RGSV-RILT-----DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPTA-QGEVREPSWSP 427 (430)
T ss_pred ----CCCE-EEcc-----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCC-CCCcCCCccCC
Confidence 2322 1111 11122345899999988877654 246667776543 2333322 23455555554
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.69 E-value=2.3e-06 Score=102.12 Aligned_cols=180 Identities=17% Similarity=0.120 Sum_probs=110.1
Q ss_pred CCeEEEEECCCCCEEEEeeeC---CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~d---g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
..+.+.+|||||+.||.++.+ ..|.+|++. +++... +.. +.+.+.+++|+|||+.|+
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~---------------~g~~~~-~~~----~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA---------------TGQREK-VAS----FPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECC---------------CCCEEE-eec----CCCCccceEECCCCCEEE
Confidence 346678999999999987654 479999987 332211 111 456677899999999776
Q ss_pred E-EECCC--cEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecC-CC
Q 001165 334 V-GWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG-SS 403 (1134)
Q Consensus 334 s-g~~Dg--~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~-h~ 403 (1134)
. .+.++ .|.+|++.++.. ..+..+ ......+.|+|++ +.++..+ .+..|+..+++....... ..
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s~dg----~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL-TRLTNG-PGIDTEPSWSPDG----KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred EEECCCCCccEEEEECCCCCE-EECCCC-CCCCCCEEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 4 44444 588889887653 333333 2345577899988 5554322 567778877765443322 11
Q ss_pred ccEEEEec-CCEEEeeecCC---cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEE
Q 001165 404 ERVLIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV 479 (1134)
Q Consensus 404 ~~v~~~s~-~k~l~S~s~d~---ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAs 479 (1134)
..-..+++ ++.++..+.++ .+.++++..+..+ .+.. .......+|+|||++|+.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER---------------------VLTD-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE---------------------EccC-CCCCCCceECCCCCEEEE
Confidence 11256677 77777665554 4555554332211 0111 111234589999999988
Q ss_pred EeCCC
Q 001165 480 AGLHG 484 (1134)
Q Consensus 480 gg~dG 484 (1134)
++.++
T Consensus 382 ~~~~~ 386 (417)
T TIGR02800 382 ATTRG 386 (417)
T ss_pred EEeCC
Confidence 87655
No 250
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.2e-05 Score=95.19 Aligned_cols=468 Identities=16% Similarity=0.127 Sum_probs=226.3
Q ss_pred CCcccccCCCCCCCC--CceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHh-hcceeEEEEcCC----
Q 001165 6 GWPQVIPLEQGLCPS--SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQR-EGENLQAVWSPD---- 78 (1134)
Q Consensus 6 gwp~~~~~~~~~~~~--~~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~-~G~~~~v~wSPD---- 78 (1134)
-||..+| | |++ ....+..+|.| |||-++.+.|.+-|.. .... .++++. ...++.|.|+|-
T Consensus 4 ~s~~tlp---G-~l~~sN~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~-------iqsie~h~s~V~~VrWap~~~p~ 70 (1062)
T KOG1912|consen 4 VSDHTLP---G-PLSRSNRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQL-------IQSIELHQSAVTSVRWAPAPSPR 70 (1062)
T ss_pred cccccCC---C-CCCcccccccccCccc-eEEEecCceEEEEehh-hhhh-------hhccccCccceeEEEeccCCCch
Confidence 4777775 3 444 34557777777 9999999989998886 2111 223333 346889999762
Q ss_pred ------ce--EEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCC-CeEEEEe
Q 001165 79 ------TK--LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGL 149 (1134)
Q Consensus 79 ------g~--~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~-~~llv~t 149 (1134)
+. .||++.-.|.|.+||............+. .++..+.|.+.. .+. +.+++-+
T Consensus 71 ~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~---~~~qdl~W~~~r---------------d~Srd~LlaIh 132 (1062)
T KOG1912|consen 71 DLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN---DSVQDLCWVPAR---------------DDSRDVLLAIH 132 (1062)
T ss_pred hccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC---cchhheeeeecc---------------CcchheeEEec
Confidence 22 45555566999999997654333332221 123444554322 012 2233333
Q ss_pred cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC-CCeEEEEEc
Q 001165 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-MRLLFVLYS 228 (1134)
Q Consensus 150 ~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~-~~~la~~~s 228 (1134)
...++.+ |+..++..+ .+ ..-......++.++|. .+.+.+.++
T Consensus 133 ~ss~lvL--wntdtG~k~------------Wk----------------------~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 133 GSSTLVL--WNTDTGEKF------------WK----------------------YDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred CCcEEEE--EEccCCcee------------ec----------------------cccCCcceeeeeeCCCCcceEEEEcc
Confidence 3444443 433332221 00 0001122334555553 345555555
Q ss_pred CCeEEEEEeccCCccccce----eccc----------ccCC---C-CC--------eEEEEECCCCCEEEEeeeCCeEEE
Q 001165 229 NGQLMSCSVSKKGLKLAEF----IKID----------KELG---S-GD--------AVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 229 DG~v~l~~~~~~~~~~~~~----~~~~----------~~~~---~-~~--------~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.|.+...+..+..+....+ +... ...+ . .. ....+|+|..+-+....-...+.|
T Consensus 177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv 256 (1062)
T KOG1912|consen 177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLV 256 (1062)
T ss_pred CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEE
Confidence 6655554442211110000 0000 0000 0 00 112378998887777788889999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC--EEEEEECCCcEEEEecCCC-----------
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC----------- 349 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~--~Lasg~~Dg~I~vWdv~~~----------- 349 (1134)
+|++ -..++....- ..+.+.-+.|-||++ .|..+-.||.+.+|-....
T Consensus 257 ~dle---------------~~~~l~vvpi----er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l 317 (1062)
T KOG1912|consen 257 FDLE---------------YECCLAVVPI----ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL 317 (1062)
T ss_pred Ecch---------------hhceeEEEEe----ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh
Confidence 9998 3444444433 567788899999887 7889999999999976431
Q ss_pred -----e---eEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecC-CCccEEEEecCCEEEeeec
Q 001165 350 -----R---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIFSFGKCCLNRGV 420 (1134)
Q Consensus 350 -----~---l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~-h~~~v~~~s~~k~l~S~s~ 420 (1134)
. +++..+.. ........|..++-...+.+.+.+.+|.+.++++-..... ..+-+.-|+|.......+.
T Consensus 318 ~~dl~~Q~~~vr~m~~~---rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k 394 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEEF---RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK 394 (1062)
T ss_pred ccccccceEEEeechhc---ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh
Confidence 1 12222221 1111222333222223344555788898887664322111 1111234444111111111
Q ss_pred CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeec-----cCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 421 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-----SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~-----~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
.++.++...+ ++......-..-..|.-.+ +.|.|--. --.+|+|...|+| ++|+.++.
T Consensus 395 ---~~l~~LS~dg-------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~------~pLvAvGT~sGTV~vvdvst~~ 458 (1062)
T KOG1912|consen 395 ---TSLISLSDDG-------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGT------VPLVAVGTNSGTVDVVDVSTNA 458 (1062)
T ss_pred ---ccccchhhcC-------CCCCCceeeecccCcccceeecCCCCCcccee------eeeEEeecCCceEEEEEecchh
Confidence 1111111100 0000000000000111000 11111111 1368899999999 99998873
Q ss_pred EEEeCCccceeeeEEEEEEeeCCE-EEEEEEecCCC-----eeEEEEEeCC-CCCCcceeEEEecCCcc--EEEEecCCE
Q 001165 495 WRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSN-----TYELLFYPRY-HLDQSSLLCRKSLLAKP--IVMDVYEDY 565 (1134)
Q Consensus 495 Wk~F~~~~~e~~~~v~gl~W~~~~-lv~~~~~~~~~-----~~eLrly~~~-~ld~~~~~~~~~l~~~~--~~l~~~~d~ 565 (1134)
.. . ...-+.-.|.|+-|.++. +|...|..-.+ ..++.+-..- .+...+-....+-.+|+ +-.+..+.+
T Consensus 459 v~--~-~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~y 535 (1062)
T KOG1912|consen 459 VA--A-SFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRY 535 (1062)
T ss_pred hh--h-hhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCce
Confidence 21 1 111122347899999886 55555543221 1233333221 22222211122112222 334567788
Q ss_pred EEEEEcCCeEEEEEEE
Q 001165 566 ILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 566 llv~~~d~~i~l~~~~ 581 (1134)
+.+++.+.-+-+|+++
T Consensus 536 Lai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 536 LAILFRREPLEIWDLK 551 (1062)
T ss_pred EEEEecccchHHHhhc
Confidence 9888888888888875
No 251
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.69 E-value=4.7e-06 Score=107.25 Aligned_cols=227 Identities=20% Similarity=0.220 Sum_probs=128.4
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
.....|.++.|-++.+.+++++++|.+.++..+.... ...+.... -...+.|++||||+.++|..+.+|++.+-+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 3467899999999999999999999999874432111 11111110 126899999999999999999999987754
Q ss_pred cccc----c-------cceeeeeeeccCcceEE------E---------Eee----cccCCCCcCeEEEEECCCCCEEEE
Q 001165 285 LAES----A-------SLIRTVSLYDWGMREVY------Y---------TFC----RYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 285 ~~~~----~-------~~~~~l~l~~~~~~~~l------~---------~l~----~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
-+=. . +..+-+ --.||+.+.. + ++. +... +...-..|+|..||.++|+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~V-sVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHV-SVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred ccceEEEEeecCccccCCCcee-eeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 3200 0 000000 0012211100 0 000 0000 2224467999999999999
Q ss_pred EEC---C---CcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCC--ccE
Q 001165 335 GWK---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSS--ERV 406 (1134)
Q Consensus 335 g~~---D---g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~--~~v 406 (1134)
.+- . +.+|||+-.| .+..+-+.- .+--.+++|.|.| ..+++ .+.+. ..|
T Consensus 227 ss~~~~~~~~R~iRVy~ReG-~L~stSE~v-~gLe~~l~WrPsG----~lIA~-----------------~q~~~~~~~V 283 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSREG-ELQSTSEPV-DGLEGALSWRPSG----NLIAS-----------------SQRLPDRHDV 283 (928)
T ss_pred EEEEcCCCceeEEEEECCCc-eEEeccccC-CCccCCccCCCCC----CEEEE-----------------EEEcCCCcEE
Confidence 875 2 5799999875 444443321 1111234455554 43332 11111 111
Q ss_pred EEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001165 407 LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 407 ~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
+-|.- +| +..++- .++ +......|..++|++|+..||+.-.|. +
T Consensus 284 vFfEr---------NG------LrhgeF------------------~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~-v 327 (928)
T PF04762_consen 284 VFFER---------NG------LRHGEF------------------TLR--FDPEEEKVIELAWNSDSEILAVWLEDR-V 327 (928)
T ss_pred EEEec---------CC------cEeeeE------------------ecC--CCCCCceeeEEEECCCCCEEEEEecCC-c
Confidence 11111 00 111110 011 112344688999999999999988777 7
Q ss_pred -EEEccCCcEEE
Q 001165 487 -LYDIRQKKWRV 497 (1134)
Q Consensus 487 -lwd~~sg~Wk~ 497 (1134)
+|.+.+-.|-+
T Consensus 328 qLWt~~NYHWYL 339 (928)
T PF04762_consen 328 QLWTRSNYHWYL 339 (928)
T ss_pred eEEEeeCCEEEE
Confidence 99999998864
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=2.8e-06 Score=101.38 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=79.7
Q ss_pred EEEEEcCCCCeEEEEE-cCCeEEEEEec--cCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC---CeEEEEec
Q 001165 212 IWLELCLPMRLLFVLY-SNGQLMSCSVS--KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR---GVVELYDL 285 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~-sDG~v~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d---g~V~lwd~ 285 (1134)
...+|+|||+.++.++ .+|...+|..+ .... ....+.. +.......+|||||+.||..+.+ ..|.+||+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~----~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTK----KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECccccc-ceEEecc----CCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 4568999999888776 35655555442 1111 0111111 11344678999999999876543 36888888
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC---CCcEEEEecCCCeeEEEeccCCCCc
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~---Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
+ +++.. .+.. ..+.+....|+|||+.|+.... ++.|.+||+.++.......+ ...
T Consensus 359 ~---------------~g~~~-~Lt~----~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~ 416 (428)
T PRK01029 359 A---------------TGRDY-QLTT----SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGE 416 (428)
T ss_pred C---------------CCCeE-EccC----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCc
Confidence 7 34332 2211 2345678999999998875443 24688888887654333322 234
Q ss_pred eeeeEEcCC
Q 001165 363 ISSPIVKPN 371 (1134)
Q Consensus 363 V~sv~~sp~ 371 (1134)
+..++|+|.
T Consensus 417 ~~~p~Ws~~ 425 (428)
T PRK01029 417 KRFPSWGAF 425 (428)
T ss_pred ccCceecCC
Confidence 556666664
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.67 E-value=1.7e-05 Score=90.72 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=80.5
Q ss_pred EEcC-CCCeEEEEEcCCeEEEEEeccCCcccccee-------cccccCCCCCeEEEEECCCCCEEEEee----------e
Q 001165 215 ELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-------KIDKELGSGDAVCASIAPEQQILAVGT----------R 276 (1134)
Q Consensus 215 ~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~va~spdg~llAsG~----------~ 276 (1134)
.|++ +++. ++++..|+++..++.+......... ....|.. +...-++++|+++.+-+.. .
T Consensus 200 ~~~~~dg~~-~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP-~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRL-VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP-GGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcE-EEEecCCeEEEEecCCCcceecceeeeccccccccccCC-CcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 4466 5544 4444559999988644332211111 1112321 3333499999998777632 1
Q ss_pred CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEE-CCCcEEEEecCCCeeEEE
Q 001165 277 RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGW-KSRGLTVWSVSGCRLMST 354 (1134)
Q Consensus 277 dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~-~Dg~I~vWdv~~~~l~~t 354 (1134)
.+.|.++|.. +++.+..+.- ...+..|++||||+ .|.+.. .++.|.|.|+.+++.+.+
T Consensus 278 ~~~V~ViD~~---------------t~kvi~~i~v-----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 278 SRFLFVVDAK---------------TGKRLRKIEL-----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCEEEEEECC---------------CCeEEEEEeC-----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 2478888888 7777777642 24789999999999 888776 578899999999999988
Q ss_pred ecc
Q 001165 355 IRQ 357 (1134)
Q Consensus 355 l~~ 357 (1134)
+..
T Consensus 338 i~~ 340 (352)
T TIGR02658 338 VNQ 340 (352)
T ss_pred ecc
Confidence 844
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-06 Score=94.21 Aligned_cols=299 Identities=9% Similarity=0.023 Sum_probs=159.7
Q ss_pred cceeEEEEcCCceEEEEEeCCCEEEEEEEEecCccee-----cCCCCCCCcceeeEEEeeceeeccccccceEEEeee-C
Q 001165 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-D 141 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~-d 141 (1134)
.-+.+|.|..+|.+||+|..+|.|.+|.-+...+.-+ .+.|++.-..+.++. ..+++ ..|.=+.. .
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSle--ieEKi------nkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLE--IEEKI------NKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhh--hhhhh------hhceecCCCC
Confidence 4467899999999999999999999998765433211 122333211221111 11110 01111111 2
Q ss_pred CCeEEEEecCCcEEEEecCCccccc--eecc--ccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEc
Q 001165 142 NKHMLLGLSDGSLYSISWKGEFYGA--FELV--HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1134)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~~--~~~~--~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs 217 (1134)
+..+++.+.|.++..|......... ..+. ..+..+..++......-.-..- .......-..|.-.|.+|+++
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve----a~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE----ASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee----eeeeeeccccceeEeeeeeec
Confidence 3567777888898876443221111 1000 0111111111100000000000 001222334688899999999
Q ss_pred CCCCeEEEEEcCCeEEEEEeccCCcc-ccceecccccCC-CCCeEEEEECCC-CCEEEEeeeCCeEEEEeccccccc---
Q 001165 218 LPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELG-SGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASL--- 291 (1134)
Q Consensus 218 p~~~~la~~~sDG~v~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~va~spd-g~llAsG~~dg~V~lwd~~~~~~~--- 291 (1134)
.|...+.++ .|=+|-+|++...+.. ..-.+.+...-. ..-+|+..|+|. ..+++-.+..|+|++-|+....-+
T Consensus 174 sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 174 SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred CccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 999988876 5778999987532210 000111110000 134778899995 457888889999999999854421
Q ss_pred eeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec-CCCeeEEEeccCC-----------
Q 001165 292 IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQIS----------- 359 (1134)
Q Consensus 292 ~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv-~~~~l~~tl~~h~----------- 359 (1134)
.+.+.....+.. +. +..+-...|..+.||++|+++++-+. -+|+|||+ ...+.+.+..-|.
T Consensus 253 sKlfEepedp~~---rs---ffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 253 SKLFEEPEDPSS---RS---FFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhhhccccCCcc---hh---hHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence 112221111100 00 11112356899999999999999776 59999999 4455565554431
Q ss_pred CCce---eeeEEcCCCCCCcceEEEcc---eeEEEeC
Q 001165 360 LSSI---SSPIVKPNQDCKYEPLMSGT---SMMQWDE 390 (1134)
Q Consensus 360 ~~~V---~sv~~sp~~~~~~~~l~sgs---~i~~W~~ 390 (1134)
.+.| ..+.++.++ ..++||+ -.++++.
T Consensus 326 nD~IfdKFec~~sg~~----~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGND----SYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ccchhheeEEEEcCCc----ceEecccccceEEEecC
Confidence 1111 245566555 5677777 4555653
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=4.3e-05 Score=89.44 Aligned_cols=359 Identities=14% Similarity=0.114 Sum_probs=193.2
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCC--C
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN--K 143 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~--~ 143 (1134)
.++...+++|.....+||+|+.||-+++.++.+........+ +... - ..+....+.++.++|..+..+. +
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----laa~-s--nLsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-----LAAA-S--NLSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-----cccc-c--ccchhhhhccCcceEEEEEeccccc
Confidence 456678999999999999999999999999976532221110 0000 0 0111223555556665554432 3
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
.+.+...+|-|.+|-. -. +. |..+ .....+++.|.+|+|+.+|..+
T Consensus 85 KLTtSDt~GlIiVWml--yk-gs-------------------------W~EE------MiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWML--YK-GS-------------------------WCEE------MINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred cccccCCCceEEEEee--ec-cc-------------------------HHHH------HhhCcCccEEEEEEEcCCCcEE
Confidence 3444444555554411 00 00 0000 0112356789999999999999
Q ss_pred EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 224 a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
++++.||.+.+=++++...+... +.....+.+.||+|.+.+..+-.+|.+.+||.+.+-... +.+
T Consensus 131 cIvYeDGavIVGsvdGNRIwgKe-------Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~K--l~~------ 195 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNRIWGKE-------LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERK--LEK------ 195 (1189)
T ss_pred EEEEccCCEEEEeeccceecchh-------cchheccceeecccHHHHHhhhcCCcEEEecccccHHHh--hhh------
Confidence 99999999877555544332111 111334578899999999999999999999987432100 000
Q ss_pred eEEEEeecccCCCCcCeEEEEE--------CCCCCEEEEEECCCcEEEEecCC-CeeEEEeccCCCCceeeeEEcCCCCC
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAW--------TPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDC 374 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~f--------SPDG~~Lasg~~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~sv~~sp~~~~ 374 (1134)
.+.-+..|........+..+.| -||--+||++.++|.+.+-.-.. ..++-.-.+ -.+....|+++|
T Consensus 196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G-- 270 (1189)
T KOG2041|consen 196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNG-- 270 (1189)
T ss_pred ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cEeecceecCCC--
Confidence 0000000000001112333444 25888999999998877654322 111111111 246667778877
Q ss_pred CcceEEEcc------------eeEEEeCCCceEEEEecCCCccEEEEec-CCEE-EeeecCCcEEeeeee-------eCC
Q 001165 375 KYEPLMSGT------------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCC-LNRGVSGMTYARQVI-------YGE 433 (1134)
Q Consensus 375 ~~~~l~sgs------------~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l-~S~s~d~ti~~w~l~-------~~~ 433 (1134)
..++-++ .+.++++-| +.+..++-....|..+++ |+.+ ..-..|+.+.+-++. ..+
T Consensus 271 --~vLAvcG~~~da~~~~d~n~v~Fysp~G-~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~ 347 (1189)
T KOG2041|consen 271 --AVLAVCGNDSDADEPTDSNKVHFYSPYG-HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEE 347 (1189)
T ss_pred --cEEEEccCcccccCccccceEEEeccch-hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeee
Confidence 5555433 233444432 333333333444555555 3321 222334454433322 123
Q ss_pred CeEEEeecCCCccc---cccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 434 DRLLVVQSEDTDEL---KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~---~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
.-++++++.+.|.. -|....-. .+...-.+.-+++|+.+--.|++-..+|.+ .++.
T Consensus 348 TvVy~y~~~e~p~y~i~Fwdtk~ne-k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~ 407 (1189)
T KOG2041|consen 348 TVVYVYQKEELPQYGIMFWDTKTNE-KTVKTVTHFENMAFYREHCVLINRQDDGVIPEYST 407 (1189)
T ss_pred EEEEEEccCCCcceEEEEEecccCh-hhhhhhcceeehheecccEEEEeccccCCCcchhh
Confidence 34566666665543 35433211 111122235577888888888888889998 8854
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=2.4e-06 Score=92.63 Aligned_cols=288 Identities=13% Similarity=0.134 Sum_probs=158.0
Q ss_pred eEEEeecCeEEEEEc-CCeEEEeecCCcce----eEEEe-ec-----ChhhHHhhcceeEEEEcCCce--EEEEEeCCCE
Q 001165 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKV----RLGKY-KR-----DSESVQREGENLQAVWSPDTK--LIAVVTSSLY 90 (1134)
Q Consensus 24 iv~fS~dg~llAs~s-~~~l~IW~~~~~~~----~l~~~-~r-----~~~sl~~~G~~~~v~wSPDg~--~Lav~t~dg~ 90 (1134)
.|.|..+|.+||++. ++.|.++.-.+... -.+.+ .. ..++++..-.+..+.|-+++. .+...|+|.+
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkt 109 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKT 109 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcc
Confidence 488999999999986 45788887653321 00111 00 012333333567899999887 4777899999
Q ss_pred EEEEEEEecCcce--ecCCCCCCCcceeeEEEeece-----------eeccccccceEEEeee--CCCeEEEEecCCcEE
Q 001165 91 LHIFKVQITEKSI--QIGGKQPSGLFFIKISLVLNE-----------QLPFAEKGLSVSNIVS--DNKHMLLGLSDGSLY 155 (1134)
Q Consensus 91 l~lw~l~~~~~~~--~~~~~~~~~~~~~s~~~~~~~-----------~~~~~~~~~~V~~~s~--d~~~llv~t~dg~v~ 155 (1134)
|++|.+....... +....+.+...+.++....-. ++...+++-.|.+++. |.+.++++ .|=.|.
T Consensus 110 iKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRIN 188 (433)
T KOG1354|consen 110 IKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRIN 188 (433)
T ss_pred eeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeee
Confidence 9999997543221 100001111122222221111 1122344445555554 44444443 444555
Q ss_pred EEecCCcc-ccceecc-ccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC-CeEEEEEcCCeE
Q 001165 156 SISWKGEF-YGAFELV-HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQL 232 (1134)
Q Consensus 156 ~~~wd~~~-~~~~~~~-~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~-~~la~~~sDG~v 232 (1134)
+ |.-+. .+.+.+. ..|. ....-..-|++..|+|.. +.|+..++.|++
T Consensus 189 L--Wnlei~d~sFnIVDIKP~----------------------------nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 189 L--WNLEIIDQSFNIVDIKPA----------------------------NMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred e--ccccccCCceeEEEcccc----------------------------CHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 4 55432 2223211 0000 011123456778899986 678889999999
Q ss_pred EEEEeccCCccccc------eecccccC----CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCc
Q 001165 233 MSCSVSKKGLKLAE------FIKIDKEL----GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGM 302 (1134)
Q Consensus 233 ~l~~~~~~~~~~~~------~~~~~~~~----~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~ 302 (1134)
.++++.....-... ...+.... -...+..+.|++.|++|++-.. -+|++||+.-...+..+++.+++-.
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 99998632110000 00000000 0234667899999999996322 6999999975554444444332111
Q ss_pred ceEEEEeecccCCCCcCe---EEEEECCCCCEEEEEECCCcEEEEecCCC
Q 001165 303 REVYYTFCRYSMDDTGPV---SCIAWTPDNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V---~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
.++... + ....| ..++||-++.+++||+...-.++++...+
T Consensus 318 ~kLc~l---Y---EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 318 SKLCSL---Y---ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHH---h---hccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 111000 0 12222 46899999999999999999999996543
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.57 E-value=6.6e-07 Score=109.21 Aligned_cols=188 Identities=13% Similarity=0.130 Sum_probs=130.5
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
+.-....++.++++..+.+|+........ .+......-...+.-+-++++.-++++|+.-|.|.+|+....
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~--~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d------- 165 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLS--KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED------- 165 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceeh--hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-------
Confidence 34445567888888888888775432211 110000000011223357778888999999999999998721
Q ss_pred eeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEE-EeccCCCCceeeeEEcCCCCC
Q 001165 296 SLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSSISSPIVKPNQDC 374 (1134)
Q Consensus 296 ~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~-tl~~h~~~~V~sv~~sp~~~~ 374 (1134)
.... .+.| |.|.+.++.||-||+++|+.|+|+++|+|++.+++... +.-+| .+.|+.+.|.|+
T Consensus 166 -------n~p~-~l~G----HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~n--- 229 (967)
T KOG0974|consen 166 -------NKPI-RLKG----HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLPN--- 229 (967)
T ss_pred -------CCcc-eecc----cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-cceeEEEEeccc---
Confidence 1111 2344 99999999999999999999999999999998866443 54455 889999999886
Q ss_pred CcceEEEcc---eeEEEeCCCceEEEEecCCCcc-E--EEEec-CCEEEeeecCCcEEeeeeeeC
Q 001165 375 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER-V--LIFSF-GKCCLNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 375 ~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~-v--~~~s~-~k~l~S~s~d~ti~~w~l~~~ 432 (1134)
.+++++ +.++|+.++.++- +..+|..+ + .+.+. .-..+|++.|+++++|++.+.
T Consensus 230 ---~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 ---RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 356655 9999988776654 55666543 3 33444 456779999999999997643
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.55 E-value=3.1e-05 Score=88.30 Aligned_cols=133 Identities=16% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCcCeEEEEECCCCCEEEEE--ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------eeEE
Q 001165 316 DTGPVSCIAWTPDNSAFAVG--WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQ 387 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg--~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~ 387 (1134)
-.++|...+|+|+++.+++. ..+-++.++|+.+. +...+... .=+.+.|+|.. +.++.++ .+.+
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~---~rNT~~fsp~~----r~il~agF~nl~gni~i 344 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ---KRNTIFFSPHE----RYILFAGFDNLQGNIEI 344 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc---ccccccccCcc----cEEEEecCCccccceEE
Confidence 57899999999999977665 46789999999887 45555442 33567788887 6555433 7889
Q ss_pred EeCCCceEEE-EecCCCccEEEEec-CCEEEee------ecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeec
Q 001165 388 WDEYGYRLYA-IEEGSSERVLIFSF-GKCCLNR------GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 459 (1134)
Q Consensus 388 W~~~~~~l~~-~~~~h~~~v~~~s~-~k~l~S~------s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~ 459 (1134)
|++.+.-... ...+.......+++ +..+.+. ..|..+++||+....- +
T Consensus 345 ~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------------f- 400 (561)
T COG5354 345 FDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------------F- 400 (561)
T ss_pred eccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh-----------------------h-
Confidence 9998765554 45554455566666 4433321 3477888888532110 0
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 460 SQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 460 ~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
..+.+.|.|.|++.-+.+..+
T Consensus 401 ----el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ----ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----hhhhccccCCcccceeeccCC
Confidence 244667777788876666544
No 259
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=9.2e-08 Score=116.68 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHHhhhcccchhhHHHHHhccCCChHHHhhhcCccceecccHHHHHHHHhhhccccc-cc--ccccHHH
Q 001165 984 NVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKLQMGT-LQ--SRLDAEF 1060 (1134)
Q Consensus 984 ~~~~~~~~l~~~a~~l~~~~~l~~l~~f~~~~~f~~~~~l~~e~~~~~~~~~~~~~l~~~~~~~~~~~-~~--~~~~~~~ 1060 (1134)
+...|+.||+|||++||.+..|.|+|+|+++++|++++||..||.|+++.++|..++..+|++|-++- |- .-.|--+
T Consensus 903 l~~~i~~~l~~ha~~lL~~~~l~dlg~~~~~l~f~l~~~l~~er~~~~~~~~~~~~~~~l~~~~~l~l~~~~a~~~~~~~ 982 (1023)
T KOG2006|consen 903 LALCIDEILARHARVLLLNFLLLDLGCFGADLHFKLVSLLTEERKRAADNDTFKSELSVLHEDFDLELPLKVAQLLDTSQ 982 (1023)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceeehhhhHHHHHHHhcCchhhhHHHHHHHhhccccchhhHhhcchHh
Confidence 45689999999999999999999999999999999999999999999999999999999999998872 21 3334444
Q ss_pred HHHhhcccc
Q 001165 1061 LLAHMCSVK 1069 (1134)
Q Consensus 1061 ~~~~~~~~~ 1069 (1134)
+....++.|
T Consensus 983 ~~g~~r~~~ 991 (1023)
T KOG2006|consen 983 INGPIRATG 991 (1023)
T ss_pred hccchhhcc
Confidence 444444443
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=1.8e-05 Score=95.19 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=106.0
Q ss_pred CCeEEEEECCCCCEEEEeeeC-C--eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRR-G--VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~d-g--~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
..+.+.+|||||+.||..+.+ + .|.+||+. +++.. .+.. -.+.....+|||||+.|+
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~---------------tg~~~-~lt~----~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY---------------TQVRE-KVTS----FPGINGAPRFSPDGKKLA 277 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECC---------------CCCeE-EecC----CCCCcCCeeECCCCCEEE
Confidence 456688999999999876543 3 57777776 33221 1111 123345789999999887
Q ss_pred E-EECCCc--EEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEe-cCCC
Q 001165 334 V-GWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIE-EGSS 403 (1134)
Q Consensus 334 s-g~~Dg~--I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~-~~h~ 403 (1134)
. .+.+|. |.+||+.++.. ..+..+ ......+.|+||+ ..++..+ .+..++..+++..... .++.
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~-~~lt~~-~~~~~~p~wSpDG----~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~ 351 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKAL-TRITRH-RAIDTEPSWHPDG----KSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ 351 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCe-EECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEEecCCCC
Confidence 5 456665 77778877654 334333 3356778999998 5443222 5666777776654432 2222
Q ss_pred ccEEEEec-CCEEEeeec-CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe
Q 001165 404 ERVLIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG 481 (1134)
Q Consensus 404 ~~v~~~s~-~k~l~S~s~-d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg 481 (1134)
..-..+++ ++.++..+. ++..++|-+...... +..+.... .....+|||||++|+.++
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-------------------~~~lt~~~-~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-------------------MQVLTSTR-LDESPSVAPNGTMVIYST 411 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-------------------eEEccCCC-CCCCceECCCCCEEEEEE
Confidence 21145677 666654433 344444432211111 01111111 112347999999988766
Q ss_pred CC-Ce--E-EEEcc
Q 001165 482 LH-GL--I-LYDIR 491 (1134)
Q Consensus 482 ~d-G~--i-lwd~~ 491 (1134)
.+ |. + +++..
T Consensus 412 ~~~g~~~l~~~~~~ 425 (448)
T PRK04792 412 TYQGKQVLAAVSID 425 (448)
T ss_pred ecCCceEEEEEECC
Confidence 53 33 3 55653
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=9.4e-06 Score=97.40 Aligned_cols=180 Identities=11% Similarity=0.061 Sum_probs=105.5
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcC-C--eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe-eeCC--e
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSN-G--QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG-TRRG--V 279 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sD-G--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG-~~dg--~ 279 (1134)
.+...+.+..|||+|+.++.++.+ | .++++++.......... ..+.....+|||||+.||.. +.+| .
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-------~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-------FEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------CCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 344567889999999998876543 3 47777765433221111 01233468999999988854 4455 5
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CC--cEEEEecCCCeeEEEec
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg--~I~vWdv~~~~l~~tl~ 356 (1134)
|.+||++ +++. ..+.. +.+......|||||+.|+..+. +| .|.++++.++.... +.
T Consensus 269 Iy~~d~~---------------~~~~-~~lt~----~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt 327 (430)
T PRK00178 269 IYVMDLA---------------SRQL-SRVTN----HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT 327 (430)
T ss_pred EEEEECC---------------CCCe-EEccc----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence 7777776 3322 12222 4455667899999998876654 33 46667776665332 21
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEee
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNR 418 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~ 418 (1134)
.. ......+.|+|++ +.++-.. .+.+|++.+++...........-..+++ ++.++-.
T Consensus 328 ~~-~~~~~~~~~Spdg----~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~ 391 (430)
T PRK00178 328 FV-GNYNARPRLSADG----KTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYA 391 (430)
T ss_pred cC-CCCccceEECCCC----CEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEE
Confidence 11 1223457899998 5443221 5678888877654443321111235666 6666543
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=1.5e-06 Score=106.16 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=113.9
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccccee
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~ 293 (1134)
+.+++..-++++++.-|.+.+|......... .. ..|.+.+..+.++-||+++|+.+.|.++|+|++++
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--~l----~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s------ 206 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI--RL----KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS------ 206 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc--ee----cccCCceEEEEEccCCcEEEEEecCcceeeeeccc------
Confidence 4456666788888889999999886222111 01 12457888999999999999999999999999993
Q ss_pred eeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCC
Q 001165 294 TVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 373 (1134)
Q Consensus 294 ~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~ 373 (1134)
++.... .-.+|++.|..+.|.|. .++|+++|.+.++|+..+.++. ++.+|-...+..++..++.
T Consensus 207 ---------~~~~~~---~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~- 270 (967)
T KOG0974|consen 207 ---------REVLGC---TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV- 270 (967)
T ss_pred ---------ccccCc---ccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc-
Confidence 332220 12249999999999998 9999999999999998876544 7888867789999998886
Q ss_pred CCcceEEEcc---eeEEEeCCC
Q 001165 374 CKYEPLMSGT---SMMQWDEYG 392 (1134)
Q Consensus 374 ~~~~~l~sgs---~i~~W~~~~ 392 (1134)
....+++ ++++|+..+
T Consensus 271 ---~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 271 ---IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ---eEEEeeccCcchhhhhhhc
Confidence 5566665 888898654
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=2.3e-05 Score=93.53 Aligned_cols=180 Identities=13% Similarity=0.146 Sum_probs=98.9
Q ss_pred ccEEEEEEcCCCCeEE---EEEcCCe--EEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee-CC----
Q 001165 209 SAIIWLELCLPMRLLF---VLYSNGQ--LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-RG---- 278 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la---~~~sDG~--v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-dg---- 278 (1134)
..+.+-.|||||+.++ +...+|+ +++.++.+......... .+.....+|||||+.||..+. +|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-------~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-------QGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-------CCCccceEECCCCCEEEEEECCCCCcce
Confidence 3445568999997533 3444555 55555544332221111 123346799999999887553 23
Q ss_pred eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEec--CC-CeeEEE
Q 001165 279 VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV--SG-CRLMST 354 (1134)
Q Consensus 279 ~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv--~~-~~l~~t 354 (1134)
.+.+|+++... .++......+ +.+.....+|||||+.|+..+ .+|...||.+ .+ +.....
T Consensus 258 ~~~~~~~~~g~------------~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 258 FIQSFSLETGA------------IGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred eEEEeecccCC------------CCcceEeecC----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 23445654210 0111111111 223456789999999888765 4676667754 22 222233
Q ss_pred eccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCC-CccEEEEec-CCEEE
Q 001165 355 IRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCCL 416 (1134)
Q Consensus 355 l~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h-~~~v~~~s~-~k~l~ 416 (1134)
+..+ ...+..+.|+||+ +.++... .+.+|++.+++......+. ...-..+++ ++.++
T Consensus 322 lt~~-~~~~~~p~wSPDG----~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 322 LTKK-YRNSSCPAWSPDG----KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLV 386 (428)
T ss_pred eccC-CCCccceeECCCC----CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEE
Confidence 3332 3456788999999 6554321 6889999888765554331 111245666 66655
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.1e-05 Score=93.04 Aligned_cols=117 Identities=18% Similarity=0.312 Sum_probs=83.3
Q ss_pred CCcccEEEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee---CCeE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR---RGVV 280 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~---dg~V 280 (1134)
...++|.++.|+|+++-|+++.. --++.+++....... . .+.+.=.++-|||.|++|+.++- -|.|
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~---d------f~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF---D------FPEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE---e------CCCCCccceEECCCCCEEEEeecCCCCCce
Confidence 45789999999999998888752 345666655432211 0 12244568899999999988764 5899
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC------CCcEEEEecCCCeeE
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLM 352 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~------Dg~I~vWdv~~~~l~ 352 (1134)
.+||+. +.+.+..+. ...-+-+.|+|||+++.|+.. |++++||+..|..+.
T Consensus 339 EvwDv~---------------n~K~i~~~~------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 339 EVWDVP---------------NRKLIAKFK------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEecc---------------chhhccccc------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 999998 444443332 223456899999999988853 789999999886543
No 265
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.2e-05 Score=88.85 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=134.2
Q ss_pred ceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEE
Q 001165 133 LSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (1134)
Q Consensus 133 ~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~ 212 (1134)
++|......+..++.|.++|.+++|.-.......- .+. ....+..+.
T Consensus 106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss----------~l~-----------------------~la~g~g~~ 152 (412)
T KOG3881|consen 106 KSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSS----------KLI-----------------------KLATGPGLY 152 (412)
T ss_pred ccccchhhcCCEEEEEecCCcEEEEeccCCccccc----------cce-----------------------eeecCCcee
Confidence 44555555567788899999998764332110000 000 011123344
Q ss_pred EEEEcCCCC-eEEEEEcC--CeEEEEEeccCC-ccccceecccccCC---CCCeEEEEECCC--CCEEEEeeeCCeEEEE
Q 001165 213 WLELCLPMR-LLFVLYSN--GQLMSCSVSKKG-LKLAEFIKIDKELG---SGDAVCASIAPE--QQILAVGTRRGVVELY 283 (1134)
Q Consensus 213 ~i~fsp~~~-~la~~~sD--G~v~l~~~~~~~-~~~~~~~~~~~~~~---~~~~~~va~spd--g~llAsG~~dg~V~lw 283 (1134)
.|.-++.-. .+|+++.. ..+.+|++.... .+..... +..|++ .-.++.+.|-|. ...+|+++.-+.||+|
T Consensus 153 ~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv-pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~Y 231 (412)
T KOG3881|consen 153 DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV-PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLY 231 (412)
T ss_pred eeccCCCCCceEecCchhcccceeeeecccceeeeeccCC-CCccccceeeeeeccceecCCCCCceEEEEecceeEEEe
Confidence 444455443 34446555 556777775321 0110000 001111 123467788887 7889999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEE-EeccCCCCc
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSS 362 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~-tl~~h~~~~ 362 (1134)
|... .+.++.++.- -..+++++...|+|+.+.+|..-|.+..+|..++.+.- .+.+. .++
T Consensus 232 Dt~~--------------qRRPV~~fd~----~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGs 292 (412)
T KOG3881|consen 232 DTRH--------------QRRPVAQFDF----LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGS 292 (412)
T ss_pred cCcc--------------cCcceeEecc----ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCC
Confidence 9983 2233333322 46789999999999999999999999999999887654 47775 678
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEE
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA 397 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~ 397 (1134)
+.++..+|.+ +.+++++ .++++|.++.+++.
T Consensus 293 irsih~hp~~----~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 293 IRSIHCHPTH----PVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cceEEEcCCC----ceEEeeccceeEEEeecccchhhh
Confidence 9999999998 8888887 88999998866654
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=0.0005 Score=76.17 Aligned_cols=283 Identities=11% Similarity=0.126 Sum_probs=153.9
Q ss_pred EEEEEc---CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC---CEEEEEEEEecCcceec-
Q 001165 33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQI- 105 (1134)
Q Consensus 33 llAs~s---~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~lw~l~~~~~~~~~- 105 (1134)
++++-+ +..|++|+.+.....+.. .+...+-+..+-++|+|+++.|.++-.+ |.+--|.++.....+..
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~----~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSL----LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccch----hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 455545 567999999843222211 2223345666889999999998887654 77889999864333321
Q ss_pred CCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec-CCcEEEEecCC--ccccceeccccCCC-------
Q 001165 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKG--EFYGAFELVHSSND------- 175 (1134)
Q Consensus 106 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~--~~~~~~~~~~~~~~------- 175 (1134)
+.....+.+... .++..+|+.++++.- .|.|.++.... ..........+...
T Consensus 82 n~~~~~g~~p~y------------------vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 82 NRQTLPGSPPCY------------------VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred eccccCCCCCeE------------------EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcccc
Confidence 111111111122 244445555555553 33444443321 11110000001000
Q ss_pred ccccccccccCCCccc------------cccCCCccc--ccccCCCcccEEEEEEcCCCCeEEEEEc-CCeEEEEEeccC
Q 001165 176 SSVAALSHHFPSNGLA------------SVDTSGAFV--SDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKK 240 (1134)
Q Consensus 176 ~~~i~~i~~~~~~~l~------------s~~~~~~~~--~~~~~~~~~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~ 240 (1134)
..+.....+.++++.. ...+++.+. .......+..-+.|.|+|+++...++++ +++|.+|..+..
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 0011122222223210 111112111 1112255667789999999998888774 788999988763
Q ss_pred --Cccccceec--ccccCCCCCeEEEEECCCCCEEEEeee-CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCC
Q 001165 241 --GLKLAEFIK--IDKELGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMD 315 (1134)
Q Consensus 241 --~~~~~~~~~--~~~~~~~~~~~~va~spdg~llAsG~~-dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~ 315 (1134)
.....+.+. +..+.+...+..+.++|||++|-++.. ...|.+|.++..++....+.. .+.
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~---------------~~t 288 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI---------------TPT 288 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE---------------ecc
Confidence 222222222 233445667888999999998877543 347999999865543322211 111
Q ss_pred CCcCeEEEEECCCCCEEEEEECC-CcEEEEecC--CCeeE
Q 001165 316 DTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVS--GCRLM 352 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~~D-g~I~vWdv~--~~~l~ 352 (1134)
+...-....|+|+|++|+++..| ..|.|+... +|++.
T Consensus 289 eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 289 EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 22234778999999999998866 579999874 45543
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.39 E-value=3.9e-05 Score=80.95 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=132.5
Q ss_pred eEEEEcCCc-----eEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 71 LQAVWSPDT-----KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 71 ~~v~wSPDg-----~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
+.+.|.|-+ -+||.+++.|.+.+|...+.....+.-... ..+ +.+ +.-.+-....+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~s------------nn~-v~~------~~r~cd~~~~~ 131 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVS------------NND-VTL------VKRYCDLKFPL 131 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeeccc------------ccc-hhh------hhhhcccccce
Confidence 456676632 389999999999999998654333321000 000 000 11111112457
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~ 225 (1134)
.+++.|.++..+..++...+... .-.+..+.+++++++++..++
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~------------------------------------h~~~~~~ns~~~snd~~~~~~ 175 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAV------------------------------------HNQNLTQNSLHYSNDPSWGSS 175 (344)
T ss_pred eeccCCcceeEEEEecCccccee------------------------------------eccccceeeeEEcCCCceEEE
Confidence 77777888777766665433210 001133778999999999999
Q ss_pred EEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceE
Q 001165 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREV 305 (1134)
Q Consensus 226 ~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~ 305 (1134)
++...+|.++.++........ +.. ....+...|.+||.....+|++.+||++.|||+.....+....+-
T Consensus 176 Vgds~~Vf~y~id~~sey~~~-~~~--a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss-------- 244 (344)
T KOG4532|consen 176 VGDSRRVFRYAIDDESEYIEN-IYE--APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS-------- 244 (344)
T ss_pred ecCCCcceEEEeCCccceeee-eEe--cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc--------
Confidence 999999999888765443322 110 112456789999999999999999999999999854332222111
Q ss_pred EEEeecccCCCCcCeEEEEECCCCC---EEEEEECCCcEEEEecCCCeeE
Q 001165 306 YYTFCRYSMDDTGPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSGCRLM 352 (1134)
Q Consensus 306 l~~l~~~~~~h~g~V~~l~fSPDG~---~Lasg~~Dg~I~vWdv~~~~l~ 352 (1134)
..+.|.|+|..+.|||-|- ++.+-.. +.+.|-|+.+.+-.
T Consensus 245 ------trp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 245 ------TRPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYVNH 287 (344)
T ss_pred ------cCCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCcee
Confidence 2234999999999998554 3444333 67888888775533
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.37 E-value=5e-05 Score=82.75 Aligned_cols=242 Identities=14% Similarity=0.229 Sum_probs=142.5
Q ss_pred cceeEEEEcCCceEEEEEeCCCEEEEEEEEecCccee-cCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEE
Q 001165 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ll 146 (1134)
+.|..+..=|-...+.+++.|.++|||---...+... +....+. ..++.+.......|+
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~--------------------~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPS--------------------PCSAMEYVSESRRLY 84 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCC--------------------CceEeeeeccceEEE
Confidence 3456666667777899999999999996533222110 0000000 012333344556789
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~ 226 (1134)
+|-.+|++..++.....+.... ......|...|..+.|+-....+++.
T Consensus 85 vg~~ngtvtefs~sedfnkm~~--------------------------------~r~~~~h~~~v~~~if~~~~e~V~s~ 132 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTF--------------------------------LKDYLAHQARVSAIVFSLTHEWVLST 132 (404)
T ss_pred EEEecceEEEEEhhhhhhhcch--------------------------------hhhhhhhhcceeeEEecCCceeEEEe
Confidence 9999999877655433222110 01234678889999999988888888
Q ss_pred EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC--EEEEeeeCCeEEEEeccccccceeeeeeeccCcce
Q 001165 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ--ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMRE 304 (1134)
Q Consensus 227 ~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~--llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~ 304 (1134)
+.|-.+. |.-...+.. ..+.. -.|.+..++.. ..-+|-..|.|.+-.+... .-.
T Consensus 133 ~~dk~~~-~hc~e~~~~-lg~Y~---------~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~-------------~~~ 188 (404)
T KOG1409|consen 133 GKDKQFA-WHCTESGNR-LGGYN---------FETPASALQFDALYAFVGDHSGQITMLKLEQN-------------GCQ 188 (404)
T ss_pred ccccceE-EEeeccCCc-ccceE---------eeccCCCCceeeEEEEecccccceEEEEEeec-------------CCc
Confidence 7776543 333221111 00100 01111111111 2334444555554443311 234
Q ss_pred EEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeE-EEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 305 VYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 305 ~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~-~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
++.++++ |.+.|++++|.|....|.+|..|..+.+||+.+++-. +.+.+| ...|..+..-+.- ..+.|+.
T Consensus 189 ~i~~~~~----h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t----~~l~S~~ 259 (404)
T KOG1409|consen 189 LITTFNG----HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHT----RQLISCG 259 (404)
T ss_pred eEEEEcC----cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhh----eeeeecc
Confidence 5667777 9999999999999999999999999999999876543 344455 5567666554433 3444433
Q ss_pred ---eeEEEeCCCce
Q 001165 384 ---SMMQWDEYGYR 394 (1134)
Q Consensus 384 ---~i~~W~~~~~~ 394 (1134)
.+.+|+.+..+
T Consensus 260 edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 260 EDGGIVVWNMNVKR 273 (404)
T ss_pred CCCeEEEEecccee
Confidence 88899987644
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.32 E-value=0.0001 Score=83.04 Aligned_cols=139 Identities=13% Similarity=0.221 Sum_probs=100.7
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCC-eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
++.+.|....+..+++.+++++.|| .+.+++..+...+. +. .+.+.+.++..+|+|+.++++.....+.++|
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---IE----KDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---ee----CCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 4566688888888999999999999 67787766543221 11 1347788999999999999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC----CcEEEEecCCCeeEEEeccCCC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D----g~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
++ +|.... .....-+-|+...|+|+++.+|-+--+ ..|+++|+.+++....-.. +
T Consensus 430 id---------------ngnv~~----idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--t 488 (668)
T COG4946 430 ID---------------NGNVRL----IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--T 488 (668)
T ss_pred ec---------------CCCeeE----ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--c
Confidence 98 332211 111245789999999999999977655 4789999999876544322 1
Q ss_pred CceeeeEEcCCC
Q 001165 361 SSISSPIVKPNQ 372 (1134)
Q Consensus 361 ~~V~sv~~sp~~ 372 (1134)
+.=.+.+|.|++
T Consensus 489 a~DfsPaFD~d~ 500 (668)
T COG4946 489 AYDFSPAFDPDG 500 (668)
T ss_pred ccccCcccCCCC
Confidence 223456677766
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.32 E-value=1.5e-06 Score=66.11 Aligned_cols=39 Identities=28% Similarity=0.596 Sum_probs=35.7
Q ss_pred ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEe
Q 001165 303 REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
++++.++.+ |.++|++|+|+|++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~----h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG----HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES----SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC----CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356777777 999999999999999999999999999997
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.31 E-value=1.5e-06 Score=101.79 Aligned_cols=203 Identities=11% Similarity=0.012 Sum_probs=137.1
Q ss_pred cCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 204 KFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
+-+|...|+++.|.|+. ..+++.+.|-.+..|+...... --.... | ...++-|+||-...-+.+.+....|+
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~----w--~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS----W--RSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec----c--cccCceeeecccCcchhhhccCCceE
Confidence 45788899999999986 5788888899999999864321 111111 2 25677899999766666667778899
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC-CCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD-G~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
+||... .+.++.++++ |...|+.++|..- -..+.+.+.||+|+.||.........-..-..
T Consensus 184 vwd~r~--------------gs~pl~s~K~----~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 184 VWDLRK--------------GSTPLCSLKG----HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred EEeccC--------------CCcceEEecc----cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc
Confidence 999983 3456667776 9999999998763 33678889999999999865332211111113
Q ss_pred CceeeeEEcCCCCCCcceEEEcc----------eeEEEeCC-CceEEEEecCCCccEEEEec---CC----------EEE
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT----------SMMQWDEY-GYRLYAIEEGSSERVLIFSF---GK----------CCL 416 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs----------~i~~W~~~-~~~l~~~~~~h~~~v~~~s~---~k----------~l~ 416 (1134)
.+|.-..+-|-++...-+.+-|. ....|+.. ..+.+..+.||++.|..|-+ +. .++
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV 325 (1081)
T ss_pred CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEE
Confidence 45666666666632211112222 33456653 35678888999998855544 11 578
Q ss_pred eeecCCcEEeeeee
Q 001165 417 NRGVSGMTYARQVI 430 (1134)
Q Consensus 417 S~s~d~ti~~w~l~ 430 (1134)
|-+.|.++++|-+.
T Consensus 326 TWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 326 TWSKDQTLRLWPID 339 (1081)
T ss_pred EeecCCceEeeecc
Confidence 99999999999864
No 272
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2.2e-05 Score=86.89 Aligned_cols=136 Identities=11% Similarity=0.118 Sum_probs=104.0
Q ss_pred cEEEEEEcCC--CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 210 AIIWLELCLP--MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 210 ~V~~i~fsp~--~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
.++++.|-+. ...||+++.-|.+++++...+.- ....+.. ....++|++.-|++.+|.+|..-|.+..||+.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~----~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r- 277 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDF----LENPISSTGLTPSGNFIYTGNTKGQLAKFDLR- 277 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEecc----ccCcceeeeecCCCcEEEEecccchhheeccc-
Confidence 4557888877 78999999999999999874332 1112211 23678999999999999999999999999999
Q ss_pred cccceeeeeeeccCcceEEEE-eecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 288 SASLIRTVSLYDWGMREVYYT-FCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~-l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+++.+.. ++| -+|.|++|...|.+.+||++|-|+.+||+|+.+.+++...-- .+..+.+
T Consensus 278 --------------~~kl~g~~~kg----~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~i 337 (412)
T KOG3881|consen 278 --------------GGKLLGCGLKG----ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFI 337 (412)
T ss_pred --------------CceeeccccCC----ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh--hccccEE
Confidence 6666555 555 789999999999999999999999999999998666533211 2234555
Q ss_pred EEcCC
Q 001165 367 IVKPN 371 (1134)
Q Consensus 367 ~~sp~ 371 (1134)
.+.++
T Consensus 338 l~~~~ 342 (412)
T KOG3881|consen 338 LLRDD 342 (412)
T ss_pred EecCC
Confidence 55443
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.19 E-value=0.0017 Score=73.65 Aligned_cols=198 Identities=15% Similarity=0.087 Sum_probs=121.1
Q ss_pred EEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEE-ECC-CCCEEEEEEC
Q 001165 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIA-WTP-DNSAFAVGWK 337 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~-fSP-DG~~Lasg~~ 337 (1134)
.|=-.|.||+.|+. +..|.|.+||.++..-..-.+.+.- .++. ..+.-..++.-+. |++ +|.++|..|.
T Consensus 270 Y~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl--~rk~------k~~k~~~pskyledfa~~~Gd~ia~VSR 340 (668)
T COG4946 270 YPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPL--DRKK------KQPKFVNPSKYLEDFAVVNGDYIALVSR 340 (668)
T ss_pred cccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCcc--cccc------ccccccCHHHhhhhhccCCCcEEEEEec
Confidence 34456779999887 5678999999874321111111000 0000 0000112233333 555 8899998887
Q ss_pred CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEecCCCccE--EEEec
Q 001165 338 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERV--LIFSF 411 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~~h~~~v--~~~s~ 411 (1134)
|...|.+...+-.+.. .+...|.-..+..++ +.++-|. .+.+++.++++.-....+ -+.| +..++
T Consensus 341 -GkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~----e~~vigt~dgD~l~iyd~~~~e~kr~e~~-lg~I~av~vs~ 411 (668)
T COG4946 341 -GKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDP----EGDVIGTNDGDKLGIYDKDGGEVKRIEKD-LGNIEAVKVSP 411 (668)
T ss_pred -CcEEEECCCCCeeEEc---CCCCceEEEEEccCC----cceEEeccCCceEEEEecCCceEEEeeCC-ccceEEEEEcC
Confidence 6777777765543322 113456666666665 4444443 788999999886665433 4556 55666
Q ss_pred -CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC----eE
Q 001165 412 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG----LI 486 (1134)
Q Consensus 412 -~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG----~i 486 (1134)
||.++.++....+-+.|+.++..++ .-....+-|...++||+++++|-|-.+| .|
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~--------------------idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRL--------------------IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeE--------------------ecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 8888888877666666666665431 1112334588999999999999888877 45
Q ss_pred -EEEccCCcE
Q 001165 487 -LYDIRQKKW 495 (1134)
Q Consensus 487 -lwd~~sg~W 495 (1134)
+||+.+++.
T Consensus 472 klydm~~~Ki 481 (668)
T COG4946 472 KLYDMDGGKI 481 (668)
T ss_pred EEEecCCCeE
Confidence 889888754
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.00015 Score=86.22 Aligned_cols=107 Identities=7% Similarity=0.063 Sum_probs=61.2
Q ss_pred EEEEcCCCCeEEEEEcC-C--eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC-------C--eE
Q 001165 213 WLELCLPMRLLFVLYSN-G--QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-------G--VV 280 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~sD-G--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-------g--~V 280 (1134)
...|+|||+.++..++. | .++.+++.+..... +.. .+ . ...+|||||+.||..+.. + .|
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~---~g--~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVF---HG--K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---Ccc---CC--C-cCceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 34799999988887643 3 45555554433211 111 01 1 124899999998877654 2 45
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC---cEEEEecCCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGC 349 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg---~I~vWdv~~~ 349 (1134)
.+.|++ +++. +.+.. .+.....+|||||+.|+-...++ .+.+.++.|.
T Consensus 352 ~v~d~~---------------~g~~-~~LT~-----~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 352 YLISTN---------------SDYI-RRLTA-----NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEECC---------------CCCe-EECCC-----CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 666655 2322 12211 12233588999999887665442 3556666664
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.15 E-value=6.9e-06 Score=104.63 Aligned_cols=181 Identities=10% Similarity=0.168 Sum_probs=130.1
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
...+.|+.=+|...+..+|+.||.|++|... .++.+..+.. .-...|+.+.|+.+|+.+..+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~---------------~~~~v~~~rt---~g~s~vtr~~f~~qGnk~~i~ 2269 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWG---------------HGQQVVCFRT---AGNSRVTRSRFNHQGNKFGIV 2269 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEecc---------------CCCeEEEeec---cCcchhhhhhhcccCCceeee
Confidence 3567788889999999999999999999987 5666555432 233789999999999999999
Q ss_pred ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCC-CceEEEEecCCCccE--
Q 001165 336 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEY-GYRLYAIEEGSSERV-- 406 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~-~~~l~~~~~~h~~~v-- 406 (1134)
..||.+.+|.+. .+.+.+.+-| ....+..+|-.. .+++.+ .+.+||.. .+..+.+...|.++.
T Consensus 2270 d~dg~l~l~q~~-pk~~~s~qch-nk~~~Df~Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCH-NKALSDFRFIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATV 2341 (2439)
T ss_pred ccCCceeecccC-CcceeccccC-Cccccceeeeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceE
Confidence 999999999986 4455454444 334444444321 222222 67789853 233334445666665
Q ss_pred EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 407 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 407 ~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
.++.| .+.++|||.+|-+++||+.+... .|.++. +. ...++.+|+..|.
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rqrql-------------------------~h~~~~----~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQL-------------------------RHTFQA----LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHHHHH-------------------------HHHhhh----hh-hhheeeccCcccc
Confidence 66667 77889999999999999876443 244443 44 6678999999999
Q ss_pred E-EEEccC
Q 001165 486 I-LYDIRQ 492 (1134)
Q Consensus 486 i-lwd~~s 492 (1134)
+ +|++..
T Consensus 2392 ikIw~~s~ 2399 (2439)
T KOG1064|consen 2392 IKIWRLSE 2399 (2439)
T ss_pred eEEEEccc
Confidence 9 999865
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.12 E-value=0.0003 Score=76.90 Aligned_cols=243 Identities=13% Similarity=0.109 Sum_probs=157.7
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
.++...|++...-|-...+..++.|-++++|--...... -..+.. ....++++.+++++.+.|.+|-.+|++.=+.
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-wpsI~~---~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-WPSIYH---YMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-Cchhhh---hCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 456666677666777778888999999999865332211 011111 1247789999999999999999999999888
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC-CCeeE-EE-eccCCCC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLM-ST-IRQISLS 361 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~l~-~t-l~~h~~~ 361 (1134)
+...-... ...+. ...|.+.|..+-|+---..+++.+.|..+ .|..+ .+.-+ .- +...-.+
T Consensus 97 ~sedfnkm-----------~~~r~----~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~ 160 (404)
T KOG1409|consen 97 LSEDFNKM-----------TFLKD----YLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASA 160 (404)
T ss_pred hhhhhhhc-----------chhhh----hhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCC
Confidence 77432111 11111 12399999999999999999999999766 56542 22111 00 0000000
Q ss_pred ceee--eEEcCCCCCCcceEEEc-ceeEEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 362 SISS--PIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 362 ~V~s--v~~sp~~~~~~~~l~sg-s~i~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.... .+|--+. +| ++..-...++-.++....+|.+.+..+.. .+.+.|+..|..+.+||+.-....
T Consensus 161 ~~~d~~~~fvGd~--------~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 161 LQFDALYAFVGDH--------SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred CceeeEEEEeccc--------ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence 0000 1111110 00 03333455666777888899999977666 567789999999999997533321
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
.....+|+..|+.++.-+--+.+.+++.||.+ +|+++..+
T Consensus 233 -------------------~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 233 -------------------AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -------------------eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 23456888889888887788899999999999 99997553
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.11 E-value=0.0055 Score=70.40 Aligned_cols=280 Identities=14% Similarity=0.065 Sum_probs=147.2
Q ss_pred CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeC----------CCEEEEEEEEecCcc--eecCC
Q 001165 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKS--IQIGG 107 (1134)
Q Consensus 40 ~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~----------dg~l~lw~l~~~~~~--~~~~~ 107 (1134)
++|.+-|.+ ....++...- .+.+. ..+||||+.|+++.. ++.|.+||+.+.... +..+
T Consensus 27 ~~v~ViD~~-~~~v~g~i~~------G~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p- 96 (352)
T TIGR02658 27 TQVYTIDGE-AGRVLGMTDG------GFLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP- 96 (352)
T ss_pred ceEEEEECC-CCEEEEEEEc------cCCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-
Confidence 689999997 3333444321 12222 239999999998876 678999999764311 1111
Q ss_pred CCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec--CCcEEEEecCCccccceeccccCCCcccccccccc
Q 001165 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (1134)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~--dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~ 185 (1134)
..+. . ..+.......+++||+.+++... +..|.+++.... .-. ..++..
T Consensus 97 ~~p~------------~---~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv------------~ei~vp 147 (352)
T TIGR02658 97 EGPR------------F---LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFV------------RMMDVP 147 (352)
T ss_pred CCch------------h---hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC--cEE------------EEEeCC
Confidence 0000 0 00111224578889999998774 456665543322 111 111110
Q ss_pred CCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCccccceecccccCCCCCeEEEEE
Q 001165 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI 264 (1134)
Q Consensus 186 ~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~ 264 (1134)
++... .. .+.-..+.+|.||..+.+.. .+|+...-+..-+... . ....... .|
T Consensus 148 -~~~~v-----------y~---t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~---~----~~v~~rP----~~ 201 (352)
T TIGR02658 148 -DCYHI-----------FP---TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE---D----EYLINHP----AY 201 (352)
T ss_pred -CCcEE-----------EE---ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCC---c----cccccCC----ce
Confidence 00000 00 01112234556665544332 3344221111000000 0 0001111 44
Q ss_pred CC-CCCEEEEeeeCCeEEEEecccccc-ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-----
Q 001165 265 AP-EQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK----- 337 (1134)
Q Consensus 265 sp-dg~llAsG~~dg~V~lwd~~~~~~-~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~----- 337 (1134)
++ +|+++-+... |+|.+-|+..... ....+.+...+ +. + ..-..+.+.-++++|||+++.++..
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~--~~----~--~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA--EK----A--DGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccc--cc----c--cccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 56 7877766555 9999999764321 11111111100 00 0 0013455566999999999888531
Q ss_pred -----CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcc-eEE--Ecc--eeEEEeCCCceEEEEe
Q 001165 338 -----SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SGT--SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 338 -----Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~-~l~--sgs--~i~~W~~~~~~l~~~~ 399 (1134)
.+.|.++|+.+++.+..+.-. ..+.+++++||+ . .+. .+. .+.+.|..+++.+...
T Consensus 273 thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 273 THKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 147999999999998888752 378999999998 5 332 222 6778888888777664
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.11 E-value=7.8e-06 Score=104.19 Aligned_cols=189 Identities=15% Similarity=0.185 Sum_probs=127.5
Q ss_pred EEEeee--CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEE
Q 001165 135 VSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (1134)
Q Consensus 135 V~~~s~--d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~ 212 (1134)
|.++.. ..-.-++|+.||.++.|.|...... .+ .-+...+.|+
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-~~----------------------------------~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-VC----------------------------------FRTAGNSRVT 2255 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeE-EE----------------------------------eeccCcchhh
Confidence 445432 2345677888999999988643211 00 0112237788
Q ss_pred EEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEee---eCCeEEEEeccccc
Q 001165 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT---RRGVVELYDLAESA 289 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~---~dg~V~lwd~~~~~ 289 (1134)
.+.|+.+|+.+.++..||.+.+|.++...-...++ |.......+|=. .++|+++ .++.+.+||.-.+.
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qc-------hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQC-------HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccCCcceecccc-------CCccccceeeee--hhhhccccCCCCCcccchhcccCc
Confidence 89999999999999999999999987322211111 222223333322 5666654 46789999976221
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEc
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 369 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~s 369 (1134)
....++ ..|.+.++++++-|.-+.|+|||.+|.|+|||+..+++.++++.- .
T Consensus 2327 ------------~~s~v~------~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~ 2378 (2439)
T KOG1064|consen 2327 ------------MNSLVH------TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D 2378 (2439)
T ss_pred ------------ccceee------eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h
Confidence 112222 239999999999999999999999999999999988877766431 1
Q ss_pred CCCCCCcceEEEcc---eeEEEeCCCceEEEEec
Q 001165 370 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 370 p~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~ 400 (1134)
.. +.+.+|+ .+++|++.+..++..+.
T Consensus 2379 -~~----~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2379 -TR----EYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -hh----heeeccCcccceEEEEccccchhhcCc
Confidence 11 6777776 89999998887766553
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.00016 Score=84.80 Aligned_cols=149 Identities=12% Similarity=0.147 Sum_probs=105.6
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc-cceec--------ccccCCCCCeEEEEECCCCCEEEEe
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIK--------IDKELGSGDAVCASIAPEQQILAVG 274 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~va~spdg~llAsG 274 (1134)
..+..+...+++|+...+++|+++.||.+.+..+....+.. ..+.. ...-.|...+.-+.||.+.+-+-+.
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 34667888999999999999999999999998775432211 11110 0001134667788999999999999
Q ss_pred eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEE-
Q 001165 275 TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS- 353 (1134)
Q Consensus 275 ~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~- 353 (1134)
..+|-|.||-+-+ |.-...+ .....+..|.+++|..||+.++...+||.|.|=++.|.+...
T Consensus 90 Dt~GlIiVWmlyk---------------gsW~EEM--iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK 152 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYK---------------GSWCEEM--INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK 152 (1189)
T ss_pred CCCceEEEEeeec---------------ccHHHHH--hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch
Confidence 9999999999862 2111111 111245679999999999999999999999999999877542
Q ss_pred EeccCCCCceeeeEEcCCC
Q 001165 354 TIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 354 tl~~h~~~~V~sv~~sp~~ 372 (1134)
.+++. -...+.+++|.
T Consensus 153 eLkg~---~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 153 ELKGQ---LLAHVLWSEDL 168 (1189)
T ss_pred hcchh---eccceeecccH
Confidence 24442 23466778776
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.08 E-value=2.4e-05 Score=87.02 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=103.0
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe---EEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV---VELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~---V~lwd~ 285 (1134)
.....+.+++.++++|+++++.+.+++.+..... . ..+... .......+.+.|-.+...+.++-.-|. +.+|..
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~-~kl~~~-~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPK-G-AKLLDV-SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCC-c-ceeeeE-eecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 3445677899999999999888877777654332 0 011000 001122233333333333333333333 333333
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceee
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
. .+.. .. ..+|-..++.|+||||+++++++..|..|+|=.....-.+.++--+|+.-|+.
T Consensus 140 ~---------------~~~~-~~----~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 140 D---------------SGRC-EP----ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVST 199 (390)
T ss_pred c---------------ccCc-ch----hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence 3 1111 11 12499999999999999999999999999998887766666654434778999
Q ss_pred eEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe
Q 001165 366 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~ 399 (1134)
++.-++. .|+||+ ++++||..+|+++..+
T Consensus 200 isl~~~~-----~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 200 ISLTDNY-----LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeeccCc-----eeeecCCCCcEEEEecccCCccccc
Confidence 9888774 566665 9999999988876443
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.07 E-value=0.0012 Score=87.15 Aligned_cols=177 Identities=10% Similarity=0.041 Sum_probs=98.4
Q ss_pred EEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccccc--eecc------cccCCCCCeEEEEECCCCC-EEEEeeeCCeEE
Q 001165 212 IWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAE--FIKI------DKELGSGDAVCASIAPEQQ-ILAVGTRRGVVE 281 (1134)
Q Consensus 212 ~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~~~--~~~~------~~~~~~~~~~~va~spdg~-llAsG~~dg~V~ 281 (1134)
.+++++|+ +..+++...+++++.|+.......... +... ...........++++|+++ ++++-+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 47899995 556666667788888876432211000 0000 0000113456799999998 556667789999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeec---c-cCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCR---Y-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~---~-~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
+||+++..... +...+.........+.. . ....-..-..++++|||+.+++-+.++.|++||..++.+. ++.+
T Consensus 766 v~D~~tg~~~~--~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG 842 (1057)
T PLN02919 766 ALDLKTGGSRL--LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAG 842 (1057)
T ss_pred EEECCCCcEEE--EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEec
Confidence 99987432100 00000000000000000 0 0001112358999999998888899999999999887654 3322
Q ss_pred CC-------------CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceE
Q 001165 358 IS-------------LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL 395 (1134)
Q Consensus 358 h~-------------~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l 395 (1134)
.+ ......+++++++ +.+++.. ++++|+.++++.
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG----~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENG----RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCC----CEEEEECCCCEEEEEECCCCcc
Confidence 21 1234567777776 5555433 777787776554
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.06 E-value=0.0016 Score=70.26 Aligned_cols=236 Identities=17% Similarity=0.201 Sum_probs=115.3
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEecc-CCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccce
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~ 292 (1134)
++.+.+|+.+|+.. |-.+.+-+..+ +..-...+..+ + ...-.=..++||||+.+||.+...|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVp-k-D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g----- 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVP-K-DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG----- 74 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecC-C-CCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-----
Confidence 45677888888775 44454433321 11110111000 0 0011224789999999999999999999999872
Q ss_pred eeeeeeccCcceEEEEeec---ccCCCCcCeEEEEECCC------CCEEEEEECCCcEEEEecC-----CCeeEEEe--c
Q 001165 293 RTVSLYDWGMREVYYTFCR---YSMDDTGPVSCIAWTPD------NSAFAVGWKSRGLTVWSVS-----GCRLMSTI--R 356 (1134)
Q Consensus 293 ~~l~l~~~~~~~~l~~l~~---~~~~h~g~V~~l~fSPD------G~~Lasg~~Dg~I~vWdv~-----~~~l~~tl--~ 356 (1134)
..+..+.+ ....-..+|..+.|-+- ..-|.+-..+|.++=+-+. +.+..+++ .
T Consensus 75 -----------~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 75 -----------SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred -----------ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 22222211 00012345667767542 1245555566777666542 22333333 2
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeE
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l 436 (1134)
.|...+|+++.++|.. +.|.-|+ .+... +. .+...+.-+..|-++.+....
T Consensus 144 ~~yp~Gi~~~vy~p~h----~LLlVgG-----------------~~~~~-------~~-~s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH----RLLLVGG-----------------CEQNQ-------DG-MSKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred ccCCCceeEEEEcCCC----CEEEEec-----------------cCCCC-------Cc-cccccccCceEEEEcCCCCcE
Confidence 2334567777777665 4433222 00000 00 000001112233333333221
Q ss_pred EEeecCCCcc--c--cccccccce--ee---ccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC----CcEEE
Q 001165 437 LVVQSEDTDE--L--KILHLNLPV--SY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRV 497 (1134)
Q Consensus 437 ~l~~g~~~~~--~--~w~~~~~~~--~~---~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s----g~Wk~ 497 (1134)
..+...+... . .+--.+++. .+ ......|..+++||||+.||+...+|.+ +|++-+ ++|+.
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 1111111000 0 000001110 11 1223468899999999999999999999 999854 45654
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.02 E-value=0.0015 Score=86.18 Aligned_cols=265 Identities=9% Similarity=0.051 Sum_probs=141.5
Q ss_pred EEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccccc-----eecccc--cCCCCCeEEEEECCCCCEEEEe-eeCCeEEE
Q 001165 212 IWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAE-----FIKIDK--ELGSGDAVCASIAPEQQILAVG-TRRGVVEL 282 (1134)
Q Consensus 212 ~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~va~spdg~llAsG-~~dg~V~l 282 (1134)
..+++++. ++.+++-+.+++|..++..+....... +..... -........+++++++..|.++ +.++.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35677775 445555566778888776542111100 000000 0001345789999988765554 45678999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCC--C-CcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMD--D-TGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 358 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~--h-~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h 358 (1134)
+|..+.. ..++.- +|.......+...+ . -..-..|+|+| +|...++.+.++.|++||..++... ++.+.
T Consensus 651 id~~~~~--V~tlag----~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~ 723 (1057)
T PLN02919 651 IDFVNET--VRTLAG----NGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD 723 (1057)
T ss_pred EecCCCE--EEEEec----cCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC
Confidence 9886321 111110 00000000000000 0 11235799999 5666677778899999999776532 22211
Q ss_pred C--------------CCceeeeEEcCCCCCCcc-eEEEcc---eeEEEeCCCceEEEEecCC-------------C----
Q 001165 359 S--------------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIEEGS-------------S---- 403 (1134)
Q Consensus 359 ~--------------~~~V~sv~~sp~~~~~~~-~l~sgs---~i~~W~~~~~~l~~~~~~h-------------~---- 403 (1134)
+ ....+.++++|++ . ..++.. +++.||+.++.......+. .
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 1 1234568899987 4 334322 8999998765432211100 0
Q ss_pred -----cc-EEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCE
Q 001165 404 -----ER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF 476 (1134)
Q Consensus 404 -----~~-v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~ 476 (1134)
.+ -+++++ ++..++-..++.|++||...+.. ....|....... .. + ...+.-.....++++++|+.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v--~tiaG~G~~G~~--dG--~-~~~a~l~~P~GIavd~dG~l 872 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV--TTLAGTGKAGFK--DG--K-ALKAQLSEPAGLALGENGRL 872 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE--EEEeccCCcCCC--CC--c-ccccccCCceEEEEeCCCCE
Confidence 01 145555 67777777888888888644322 112221110000 00 0 00111123458999999998
Q ss_pred EEEEeCCCeE-EEEccCCc
Q 001165 477 LAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 477 LAsgg~dG~i-lwd~~sg~ 494 (1134)
+++-+.++.| +||+.+++
T Consensus 873 yVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 873 FVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEECCCCEEEEEECCCCc
Confidence 8888889999 99998874
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.97 E-value=5.6e-05 Score=89.04 Aligned_cols=219 Identities=13% Similarity=0.128 Sum_probs=136.8
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEecc-CCccccceecccccCCCC---CeEEEEECCC--CCEEEEeeeCCeEE
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSG---DAVCASIAPE--QQILAVGTRRGVVE 281 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~-~~~~~~~~~~~~~~~~~~---~~~~va~spd--g~llAsG~~dg~V~ 281 (1134)
.+.+..++.+|.|+-+|.++.-|- ++.+++. +.+ ..|++.. .+..+.|||. ..+-++.+.+..-.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~p--------pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai 94 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTP--------PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI 94 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCC--------ceeeeccCcchhcceecccCCCCceeEEecCcchhh
Confidence 456778889999999999888775 3444432 111 1222211 1223455553 34555556666667
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCe-eEEEe-ccC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCR-LMSTI-RQI 358 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~-l~~tl-~~h 358 (1134)
+|++..... +.+. ..+- +|+.+|+.+.|.|... .+|++|-|-.+..||+.+.. .+-+. .++
T Consensus 95 iwnlA~ss~--~aIe----------f~lh----ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 95 IWNLAKSSS--NAIE----------FVLH----GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred hhhhhcCCc--cceE----------EEEe----cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence 899874332 1111 1222 3999999999999654 89999999999999997743 33332 233
Q ss_pred CCCceeeeEEcCCCCCCcceEEEc--ceeEEEeCC-CceEEEEecCCCccEEEEec----CCEEEeeecCCcEEeeeeee
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEY-GYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sg--s~i~~W~~~-~~~l~~~~~~h~~~v~~~s~----~k~l~S~s~d~ti~~w~l~~ 431 (1134)
+..+.++++-.++ ..+++. -.+.+||.. ++..+...++|...+..+.| -..+.+.+.|++++.|+...
T Consensus 159 --s~asqVkwnyk~p---~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 159 --SAASQVKWNYKDP---NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred --ccCceeeecccCc---chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 3455666664431 344442 288999985 45667777888777766666 23567889999999999655
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCC
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM 475 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~ 475 (1134)
.... +......+.||.--.+-|=|.
T Consensus 234 St~e-------------------~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 234 STTE-------------------SKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cccc-------------------cceeccccCcceeccccccCc
Confidence 4331 223334566777777766443
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.95 E-value=6.4e-05 Score=83.78 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=65.9
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
|..-++.|+|+||++.|.++..|+.|||=.... .-.+.. +--||+.-|..++..+ ++.|+|
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa---------------~f~Ies---fclGH~eFVS~isl~~-~~~LlS 210 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA---------------TFVIES---FCLGHKEFVSTISLTD-NYLLLS 210 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCc---------------ccchhh---hccccHhheeeeeecc-Cceeee
Confidence 346678999999999999999999999977661 112222 2336999999999876 566999
Q ss_pred EECCCcEEEEecCCCeeEEEec
Q 001165 335 GWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
||.|+++++||+.+++++.++.
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 9999999999999988776653
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00062 Score=73.14 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC-CEEEEeeeCCeEEEEeccccc
Q 001165 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~V~lwd~~~~~ 289 (1134)
..++.|++.+..+++..++|++...+.........+... .+..++..++|+-.. .++-+|+.||.+.-||+.-+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk----~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK----VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc----ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 457889999999999999999885444322222111111 133455567776644 578899999999999998221
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCC
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
+.+.+ ...-|+..|.+|.-|| ++.++++|+.|-.|++||+..
T Consensus 200 --------------~~i~~---n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 200 --------------TFIWH---NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred --------------ceeee---cceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 11211 1112888999999987 788999999999999999863
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.90 E-value=0.00053 Score=73.65 Aligned_cols=208 Identities=13% Similarity=0.145 Sum_probs=125.4
Q ss_pred eeEEEEcC---Cce-EEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 70 NLQAVWSP---DTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 70 ~~~v~wSP---Dg~-~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
...+.|+. ||. .++.+-+.|.|.+|..+.........+- .+.... ....-...|...+..+
T Consensus 72 ~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l-------s~~ki~--------~~~~lslD~~~~~~~i 136 (339)
T KOG0280|consen 72 EFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL-------SSKKIS--------VVEALSLDISTSGTKI 136 (339)
T ss_pred cceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc-------chhhhh--------heeeeEEEeeccCceE
Confidence 34566642 444 5677777788888887654322222110 000000 0001123455567788
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC-CCeEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-MRLLF 224 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~-~~~la 224 (1134)
+++.++|.+....-+.. .+ . +...+..|+-.+....|+.. .+.+.
T Consensus 137 ~vs~s~G~~~~v~~t~~---~l------------e-------------------~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEM---VL------------E-------------------KVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred EEEcCCCcEEEEeccee---ee------------e-------------------ecccccccceeeeeeecccCCCceEE
Confidence 88888888764322211 11 0 11146678888888888765 47889
Q ss_pred EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
+++.||.+..|+..... ..++.....+...++|+.=|| +...||+|+.|..|++||..+ .+
T Consensus 183 tGgDD~~l~~~D~R~p~----~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn--------------m~ 244 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPK----TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN--------------MG 244 (339)
T ss_pred ecCCCceEEEEEecCCc----ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc--------------cc
Confidence 99999999999987222 123322234567888887777 567899999999999999884 23
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCC
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~ 349 (1134)
+++.. ..-.|.|.-+.++|--. .|..+.--++.+|-+...+
T Consensus 245 kPl~~-----~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 245 KPLFK-----AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred Ccccc-----CccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 33322 12358899999999432 3333334457777777543
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.0034 Score=74.67 Aligned_cols=135 Identities=7% Similarity=-0.030 Sum_probs=77.3
Q ss_pred CeEEEEECCCCCE-EEEeeeC---CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 258 DAVCASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 258 ~~~~va~spdg~l-lAsG~~d---g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
....-+|||||+. ++..+.+ ..|.++|+. +++...- .. ..+.+...+|||||+.|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~---------------tg~~~~l-t~----~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY---------------TGKKEKI-AS----SQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC---------------CCcEEEE-ec----CCCcEEeeEECCCCCEEE
Confidence 4557899999984 6654443 457777776 3332211 11 345667788999998776
Q ss_pred EE-ECC--CcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCCc
Q 001165 334 VG-WKS--RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSE 404 (1134)
Q Consensus 334 sg-~~D--g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~~ 404 (1134)
.. +.+ ..|.++++.++... .+..+ ........|+||+ +.++-.+ .+...++.+++.-.+......
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~~-~LT~~-~~~d~~p~~SPDG----~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTLT-QITNY-PGIDVNGNFVEDD----KRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred EEEccCCCcEEEEEECCCCcEE-EcccC-CCccCccEECCCC----CEEEEEECCCCCceEEEEECCCCCeEeCccCCCc
Confidence 44 334 35666687777533 33322 2223456899998 4433212 566777777665333221111
Q ss_pred cEEEEec-CCEEEeee
Q 001165 405 RVLIFSF-GKCCLNRG 419 (1134)
Q Consensus 405 ~v~~~s~-~k~l~S~s 419 (1134)
...++| |+.++-.+
T Consensus 323 -~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 323 -NSSVSTYKNYIVYSS 337 (419)
T ss_pred -CceECCCCCEEEEEE
Confidence 136677 66665433
No 289
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.85 E-value=0.0037 Score=70.23 Aligned_cols=258 Identities=16% Similarity=0.147 Sum_probs=129.6
Q ss_pred EEEeecCeEEEEEc-----------CCeEEEeecCCcceeEEEeecChhhHHhhc-ceeEEEEcCCceEEEEE--eCCCE
Q 001165 25 IYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVV--TSSLY 90 (1134)
Q Consensus 25 v~fS~dg~llAs~s-----------~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~--t~dg~ 90 (1134)
+.+||||+.+.+++ .+-|.+||.. ...+.+-..-...--...+ .....++|+||+.+.+. |-...
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 55799999877654 2359999996 5544443332221000011 11235677777766654 22334
Q ss_pred EEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeC-CCeEEEEecCCcEEEEecCCccccceec
Q 001165 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1134)
Q Consensus 91 l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d-~~~llv~t~dg~v~~~~wd~~~~~~~~~ 169 (1134)
|-|.|++.. +.. ..++.. .+..+-|. ++.+.+-+.||.+..+..|........
T Consensus 120 VtVVDl~~~--kvv-------------------~ei~~P----GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~- 173 (342)
T PF06433_consen 120 VTVVDLAAK--KVV-------------------GEIDTP----GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK- 173 (342)
T ss_dssp EEEEETTTT--EEE-------------------EEEEGT----SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE-
T ss_pred EEEEECCCC--cee-------------------eeecCC----CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe-
Confidence 555555432 110 111111 12223332 356777788998888887754322110
Q ss_pred cccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccccee-
Q 001165 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI- 248 (1134)
Q Consensus 170 ~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~- 248 (1134)
... .|-. .++.-+..-+++..++.+.+.+-+|.++-.++++.........
T Consensus 174 ---------~t~-~F~~-------------------~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 174 ---------STK-VFDP-------------------DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp ---------EEE-ESST-------------------TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred ---------ecc-ccCC-------------------CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 000 1111 1111122234455666667777778887777765432211111
Q ss_pred ------cccccCCCCCeEEEEECCCCCEEEEee---eCC-------eEEEEeccccccceeeeeeeccCcceEEEEeecc
Q 001165 249 ------KIDKELGSGDAVCASIAPEQQILAVGT---RRG-------VVELYDLAESASLIRTVSLYDWGMREVYYTFCRY 312 (1134)
Q Consensus 249 ------~~~~~~~~~~~~~va~spdg~llAsG~---~dg-------~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~ 312 (1134)
....|.. +.---+|+++..+.|-+-- .+| .|-+||++ +++.+..+..
T Consensus 225 ~~t~~e~~~~WrP-GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~---------------t~krv~Ri~l- 287 (342)
T PF06433_consen 225 LLTDAEKADGWRP-GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK---------------THKRVARIPL- 287 (342)
T ss_dssp SS-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT---------------TTEEEEEEEE-
T ss_pred ccCccccccCcCC-cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC---------------CCeEEEEEeC-
Confidence 0112221 1112467776544333321 112 36666666 7777777653
Q ss_pred cCCCCcCeEEEEECCCCC-EEEEE-ECCCcEEEEecCCCeeEEEeccCC
Q 001165 313 SMDDTGPVSCIAWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQIS 359 (1134)
Q Consensus 313 ~~~h~g~V~~l~fSPDG~-~Lasg-~~Dg~I~vWdv~~~~l~~tl~~h~ 359 (1134)
..++.+|+.|.|.+ +|.+. ..++++.+||..+++++.++++-|
T Consensus 288 ----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 288 ----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp ----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred ----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 34688999999988 66544 457899999999999999998743
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.85 E-value=0.0067 Score=69.82 Aligned_cols=192 Identities=17% Similarity=0.145 Sum_probs=109.2
Q ss_pred CCeEEEEECCCC--CEEEE-----eeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC
Q 001165 257 GDAVCASIAPEQ--QILAV-----GTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN 329 (1134)
Q Consensus 257 ~~~~~va~spdg--~llAs-----G~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG 329 (1134)
..+...+|+|.+ ..||. +..++++++|.+. .+..+.+-.- -...=..+.|.+.|
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp---------------~~s~l~tk~l----fk~~~~qLkW~~~g 234 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP---------------KNSVLVTKNL----FKVSGVQLKWQVLG 234 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc---------------CCCeeeeeee----EeecccEEEEecCC
Confidence 556677888864 23442 4567778888876 2222221100 01112457888888
Q ss_pred CEEEEEE-----------CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceE
Q 001165 330 SAFAVGW-----------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL 395 (1134)
Q Consensus 330 ~~Lasg~-----------~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l 395 (1134)
.+|..-- ....+.|.++.... +....+- .++|...+|.|.+. .-.+++|. ++.+++..+. +
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~-~~pVhdf~W~p~S~--~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDL-KDPVHDFTWEPLSS--RFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccc-cceeccc-cccceeeeecccCC--ceeEEecccccceeecccccc-e
Confidence 8765421 12356677765432 2222121 56899999999872 11233444 7888888876 4
Q ss_pred EEEecCCCccEEEEec-CCEEEeeecC---CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEc
Q 001165 396 YAIEEGSSERVLIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 471 (1134)
Q Consensus 396 ~~~~~~h~~~v~~~s~-~k~l~S~s~d---~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~S 471 (1134)
..........-..|++ .+.++.++.| |.+-+|+.. .+.. +...+.+.| -+.+.||
T Consensus 310 ~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~---~rf~----------------~~~~~~~~n--~s~~~ws 368 (561)
T COG5354 310 RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA---GRFK----------------VAGAFNGLN--TSYCDWS 368 (561)
T ss_pred EEecCCcccccccccCcccEEEEecCCccccceEEeccC---CceE----------------EEEEeecCC--ceEeecc
Confidence 3333222223356777 7788777665 445555532 2211 122344444 4477899
Q ss_pred CCCCEEEEEeC------CCeE-EEEccCC
Q 001165 472 KDGMFLAVAGL------HGLI-LYDIRQK 493 (1134)
Q Consensus 472 pdG~~LAsgg~------dG~i-lwd~~sg 493 (1134)
|||+++-++.. |..+ +||+.+.
T Consensus 369 pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 369 PDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CCceEEEecCCCcccccCcceEEEEecCc
Confidence 99999987753 5668 9998765
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.81 E-value=0.012 Score=69.18 Aligned_cols=287 Identities=17% Similarity=0.117 Sum_probs=152.3
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCe-EEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
++.+.+++.+|.++.++...+.. .|... .. ..+ ...+ .++..+.+|+.+|.+..+|.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~-----~W~~~-~~-~~~~~~p~--v~~~~v~v~~~~g~l~ald~~------------ 123 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR-----LWRVD-LD-ERLSGGVG--ADGGLVFVGTEKGEVIALDAE------------ 123 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE-----eeeec-CC-CCcccceE--EcCCEEEEEcCCCEEEEEECC------------
Confidence 45667777778887777543221 11100 00 111 1122 246678888899999999988
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC----ceeeeEEcCCC
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS----SISSPIVKPNQ 372 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~----~V~sv~~sp~~ 372 (1134)
+|+.+..... .+.+.+ +| ++..++.+..+|.+..||..+++.+-........ ...++... ++
T Consensus 124 ---tG~~~W~~~~-----~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~ 191 (377)
T TIGR03300 124 ---DGKELWRAKL-----SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG 191 (377)
T ss_pred ---CCcEeeeecc-----Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC
Confidence 6666654321 122221 22 3456677778899999999888776655432110 00111111 11
Q ss_pred CCCcceEEEc--ceeEEEeCCCceEEEEec-CCC------ccEEE--Eec---CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 373 DCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSS------ERVLI--FSF---GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 373 ~~~~~~l~sg--s~i~~W~~~~~~l~~~~~-~h~------~~v~~--~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
..++.. ..+..+|+++++..-... +.. .++.. -+| +..+..++.++.+..+|..+++.
T Consensus 192 ----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~---- 263 (377)
T TIGR03300 192 ----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV---- 263 (377)
T ss_pred ----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE----
Confidence 222221 267778877665432211 100 00000 011 44566667778888887655443
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc--EEEeCCccceeeeEEEEEEee
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWL 515 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~--Wk~F~~~~~e~~~~v~gl~W~ 515 (1134)
.|..- ..... ....++.++.+++.+|.+ .+|..+|+ |+.-... .. ......-.
T Consensus 264 ---------~W~~~-----~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~--~~ssp~i~ 319 (377)
T TIGR03300 264 ---------LWKRD-----ASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YR--QLTAPAVV 319 (377)
T ss_pred ---------EEeec-----cCCcc------CceEeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CC--ccccCEEE
Confidence 34221 00111 112356788888899999 99998874 5431100 00 11122224
Q ss_pred CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEE--ecCCEEEEEEcCCeEEEEE
Q 001165 516 GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYRPFDVHIFH 579 (1134)
Q Consensus 516 ~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~--~~~d~llv~~~d~~i~l~~ 579 (1134)
++.++++ +.+..|.+++. ++..++++.++....+..+ ..++.+.+.+.|+.+..|+
T Consensus 320 g~~l~~~-----~~~G~l~~~d~---~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 320 GGYLVVG-----DFEGYLHWLSR---EDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEE-----eCCCEEEEEEC---CCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEeC
Confidence 5666665 23356777765 3456788877655433332 3557788888888887763
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.80 E-value=0.0071 Score=71.23 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=75.7
Q ss_pred CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc-cCCCC--cCeEEEEECC--CCCEEEEEECCCcEEE
Q 001165 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY-SMDDT--GPVSCIAWTP--DNSAFAVGWKSRGLTV 343 (1134)
Q Consensus 269 ~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~-~~~h~--g~V~~l~fSP--DG~~Lasg~~Dg~I~v 343 (1134)
..+.+|..+|.+..+|.. +|+.+.+.... ..+.. ..+..+.-+| ++..+.+++.+|.+..
T Consensus 191 ~~v~~~~~~g~v~ald~~---------------tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQ---------------TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred CEEEEECCCCEEEEEEcc---------------CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 367778888999998887 44433321100 00000 0011111112 3557777788899999
Q ss_pred EecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEc--ceeEEEeCCCceEEEEecCCCccEE-EEe-cCCEEEeee
Q 001165 344 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERVL-IFS-FGKCCLNRG 419 (1134)
Q Consensus 344 Wdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg--s~i~~W~~~~~~l~~~~~~h~~~v~-~~s-~~k~l~S~s 419 (1134)
||..++......... ....+... ++ ..++.. +.+..+|..+++.+-....-..... ... .+..+..++
T Consensus 256 ~d~~tG~~~W~~~~~---~~~~p~~~-~~----~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~ 327 (377)
T TIGR03300 256 LDLRSGRVLWKRDAS---SYQGPAVD-DN----RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGD 327 (377)
T ss_pred EECCCCcEEEeeccC---CccCceEe-CC----EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEe
Confidence 999888766554321 11122221 11 222322 2788888877765433211111111 111 166777888
Q ss_pred cCCcEEeeeeeeCCC
Q 001165 420 VSGMTYARQVIYGED 434 (1134)
Q Consensus 420 ~d~ti~~w~l~~~~~ 434 (1134)
.+|.+.+++...++.
T Consensus 328 ~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 328 FEGYLHWLSREDGSF 342 (377)
T ss_pred CCCEEEEEECCCCCE
Confidence 999999988655543
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.77 E-value=0.0018 Score=68.68 Aligned_cols=203 Identities=11% Similarity=0.011 Sum_probs=122.6
Q ss_pred EEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCc
Q 001165 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGM 302 (1134)
Q Consensus 223 la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~ 302 (1134)
+.+++.|.++.++.++....+. ..+.+ . -...+++++||++++++-+....|-.|.+++.+.....+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~-~~h~~----~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~------ 198 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF-AVHNQ----N-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY------ 198 (344)
T ss_pred eeeccCCcceeEEEEecCcccc-eeecc----c-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE------
Confidence 3445566666666665432211 11111 1 1256899999999999999999999999996554322111
Q ss_pred ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC-CeeEE---EeccCCCCceeeeEEcCCCCCCcce
Q 001165 303 REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMS---TIRQISLSSISSPIVKPNQDCKYEP 378 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~-~~l~~---tl~~h~~~~V~sv~~sp~~~~~~~~ 378 (1134)
.+ ..+..=.+.+||.....+|++..||++.|||+.. +.++. +-+.||.+.+..+.|++.|.- ..
T Consensus 199 ------~a----~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l--DL 266 (344)
T KOG4532|consen 199 ------EA----PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL--DL 266 (344)
T ss_pred ------ec----ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc--eE
Confidence 11 1334457899999999999999999999999964 22332 234456778888888876521 11
Q ss_pred EEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccccc-cee
Q 001165 379 LMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVS 457 (1134)
Q Consensus 379 l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~-~~~ 457 (1134)
| .. ..|.+.+..+ |...+.+... +.+ +..
T Consensus 267 L-----------------f~-sEhfs~~hv~------------------D~R~~~~~q~--------------I~i~~d~ 296 (344)
T KOG4532|consen 267 L-----------------FI-SEHFSRVHVV------------------DTRNYVNHQV--------------IVIPDDV 296 (344)
T ss_pred E-----------------EE-ecCcceEEEE------------------EcccCceeeE--------------EecCccc
Confidence 1 11 1222222211 1111111100 001 123
Q ss_pred eccCCCc-eEEEEEcCCCCEEEEEeCCCeEEEEccCCcEEEeC
Q 001165 458 YISQNWP-VQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFG 499 (1134)
Q Consensus 458 ~~~h~~~-V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk~F~ 499 (1134)
+..|+.. |....|+.+|..+.+++.+...-|++.++.=..|.
T Consensus 297 ~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srsR~~fp 339 (344)
T KOG4532|consen 297 ERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRSRFSFP 339 (344)
T ss_pred cccccccccccccccCCCcccccccchhhheeeccccceeccC
Confidence 3445444 88889999999999999888778988877544553
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.76 E-value=0.0052 Score=77.34 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=53.9
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
+..|.++.|-.+.+-+++++++|.+.+.+........... -.+.|.+++||||++++|..+..+++.+=+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~-------vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN-------VDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee-------ccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 4689999999999999999999999987554322211111 136789999999999999998888876643
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.0046 Score=71.60 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=52.4
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC-----------CE
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-----------LY 90 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d-----------g~ 90 (1134)
+-.|.+||-|.+|++.-...|.+|--. .+.|..+ + -|-.+..+.|||.-++|++-+.. ..
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~-------~f~r~~R-F-~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGE-------SFDRIQR-F-YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCc-------cHHHHHh-c-cCCCceeeecCCccceEEEecCCccccCcccCCCce
Confidence 466899999999999999999999764 1222111 1 13457889999999999987632 35
Q ss_pred EEEEEEEecC
Q 001165 91 LHIFKVQITE 100 (1134)
Q Consensus 91 l~lw~l~~~~ 100 (1134)
++|||+.++.
T Consensus 284 l~IWDI~tG~ 293 (698)
T KOG2314|consen 284 LIIWDIATGL 293 (698)
T ss_pred EEEEEccccc
Confidence 8999998764
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0038 Score=75.84 Aligned_cols=223 Identities=19% Similarity=0.273 Sum_probs=130.9
Q ss_pred eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCccc-EE
Q 001165 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA-II 212 (1134)
Q Consensus 134 ~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~-V~ 212 (1134)
.+.|+++.++.+++|+.+|.|..+.-.-..... +...... |.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~-------------------------------------fqa~~~siv~ 69 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRG-------------------------------------FQAYEQSIVQ 69 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeeh-------------------------------------heecchhhhh
Confidence 588999999999999999998764311111000 1111111 22
Q ss_pred EEEEcCCCCeEEEEEcCCe-----EEEEEeccCCccc-ccee---c--ccccC-CCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 213 WLELCLPMRLLFVLYSNGQ-----LMSCSVSKKGLKL-AEFI---K--IDKEL-GSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~sDG~-----v~l~~~~~~~~~~-~~~~---~--~~~~~-~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
.+-.....+.++++..|+. +.+|++.+..... ++.. . +.... +..++.++++|.+-+.+|+|-.||.|
T Consensus 70 ~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V 149 (933)
T KOG2114|consen 70 FLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLV 149 (933)
T ss_pred HhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEE
Confidence 2222222345666665544 7788887553322 2222 1 11111 24678899999999999999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCE-EEEEECCCcEEEEecCCCe-eEEEeccC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCR-LMSTIRQI 358 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~-Lasg~~Dg~I~vWdv~~~~-l~~tl~~h 358 (1134)
..+.-+- .| +.|+. .. +...-.++|+.+++..||+. +.++-. ..|.++++.+.. ..+++..+
T Consensus 150 ~~~~GDi----~R-----Drgsr-~~-----~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~ld~~ 213 (933)
T KOG2114|consen 150 ICYKGDI----LR-----DRGSR-QD-----YSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYSLSGRTPSLKVLDNN 213 (933)
T ss_pred EEEcCcc----hh-----ccccc-ee-----eeccCCCCceeeEEecCCceeEEEEec-ceeEEEEecCCCcceeeeccC
Confidence 9987551 01 10110 00 11113578999999999997 333333 479999998765 34445555
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEec-CCCccEEEEecCC
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSFGK 413 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~~-~h~~~v~~~s~~k 413 (1134)
..++++..+++.. .+.+.+++ -+.+++..+...-..+. ||.-.+..+++|-
T Consensus 214 -G~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~ 266 (933)
T KOG2114|consen 214 -GISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGL 266 (933)
T ss_pred -CccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCE
Confidence 4567888887765 13555555 67788876644333333 6555555554443
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.0033 Score=75.19 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=82.8
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC------CCC--
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP------DNS-- 330 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP------DG~-- 330 (1134)
-.++.|+|.| +||.|+.+ .|.|-|.. +-+.+.++.. |...|+.|.|.| ++.
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~---------------s~q~iqsie~----h~s~V~~VrWap~~~p~~llS~~ 76 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSR---------------SLQLIQSIEL----HQSAVTSVRWAPAPSPRDLLSPS 76 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehh---------------hhhhhhcccc----CccceeEEEeccCCCchhccCcc
Confidence 3467888877 88988765 56676765 4445555554 889999999988 222
Q ss_pred ----EEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceE--EEcc-eeEEEeCCCceEEE
Q 001165 331 ----AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL--MSGT-SMMQWDEYGYRLYA 397 (1134)
Q Consensus 331 ----~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l--~sgs-~i~~W~~~~~~l~~ 397 (1134)
.||++.-.|.|.+||...+..++.+..+ .+++..+.|-+..+.....+ ++|+ ++.+|+..+|+.+-
T Consensus 77 ~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred ccceeEEeccccCcEEEEEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee
Confidence 6788888899999999888777777665 77888888877765332222 3344 88888777665543
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.016 Score=67.33 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=152.6
Q ss_pred EEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee-----------CCeE
Q 001165 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-----------RGVV 280 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-----------dg~V 280 (1134)
+-+.|||-|.++++.-.-| |.+|.-..+.. .+ +..| ..+--+.|||..++|++=+. ...+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r--~~-----RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR--IQ-----RFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHH--HH-----hccC-CCceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 4688999999999887776 56775433221 11 1122 56678999999999998542 2479
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeE--EEeccC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM--STIRQI 358 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~--~tl~~h 358 (1134)
.|||+. +|...+.+..+ .+....-.-..||.|++++|--.. .+|.|++...-.++ .+++
T Consensus 285 ~IWDI~---------------tG~lkrsF~~~-~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-- 345 (698)
T KOG2314|consen 285 IIWDIA---------------TGLLKRSFPVI-KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK-- 345 (698)
T ss_pred EEEEcc---------------ccchhcceecc-CCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC--
Confidence 999999 66666665421 001111235799999999998777 48999998663332 1221
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEEEe-----eecCCcEEeeeeeeCC
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLN-----RGVSGMTYARQVIYGE 433 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S-----~s~d~ti~~w~l~~~~ 433 (1134)
-++|....|+|.+ +.++ .|.+++...-+.. .+..+.-.+.+=+ .+.+ -..|. ..+
T Consensus 346 -i~gIr~FswsP~~----~llA------Ywtpe~~~~parv-----tL~evPs~~~iRt~nlfnVsDc--kLhWQ--k~g 405 (698)
T KOG2314|consen 346 -ISGIRDFSWSPTS----NLLA------YWTPETNNIPARV-----TLMEVPSKREIRTKNLFNVSDC--KLHWQ--KSG 405 (698)
T ss_pred -CccccCcccCCCc----ceEE------EEcccccCCcceE-----EEEecCccceeeeccceeeecc--EEEec--cCC
Confidence 2456677788876 5544 6777654321110 0111111111111 1111 11122 122
Q ss_pred CeEEEeecCCC-c----------cccccccccceeeccCCCceEEEEEcCCCCEEEEEeC---CCeE-EEEcc--CCcEE
Q 001165 434 DRLLVVQSEDT-D----------ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---HGLI-LYDIR--QKKWR 496 (1134)
Q Consensus 434 ~~l~l~~g~~~-~----------~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~---dG~i-lwd~~--sg~Wk 496 (1134)
+.+.+....-+ . .+...--++|..-..-..+|-..++-|.|..+|+-+. ..++ .|.+. .++|+
T Consensus 406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 22222211000 0 0011112234444444567888899999998875543 3356 78775 34555
Q ss_pred EeCCccceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 497 VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 497 ~F~~~~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+.... ++ -.+..+.|. |.++|+++.. +..+.+.+|+.+
T Consensus 486 lVk~~--dk-~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 486 LVKEL--DK-KFANTVFWSPKGRFVVVAALV--SRRGDLEFYDTD 525 (698)
T ss_pred hhhhh--cc-cccceEEEcCCCcEEEEEEec--ccccceEEEecc
Confidence 43321 11 346678886 5678887554 355678999885
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.64 E-value=0.0011 Score=70.01 Aligned_cols=153 Identities=15% Similarity=0.082 Sum_probs=93.9
Q ss_pred CCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC-eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--------eeE
Q 001165 316 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 386 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~-~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--------~i~ 386 (1134)
|+++-.+=+.|--++.+++++.||.+.+.++..- ++.+.+..-+.+.. +......+ +.+.++. ..+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~----~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHG----NSILSGGCGNWNAQDNFY 162 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecc----cEEecCCcceEeecccee
Confidence 5555444455566788999999999999998641 12222221111111 11111111 3333332 334
Q ss_pred EEeCCCceEEEEecCCCccE--EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc-eeeccC
Q 001165 387 QWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQ 461 (1134)
Q Consensus 387 ~W~~~~~~l~~~~~~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~-~~~~~h 461 (1134)
.|+.+..+.+.........| .+-+| ...++.|+.||.+-+||..+... | ..|+.|
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH 222 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence 45544333332222112234 33444 55677899999999999776533 4 467799
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeE-EEEccCC
Q 001165 462 NWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 462 ~~~V~~va~Sp-dG~~LAsgg~dG~i-lwd~~sg 493 (1134)
..+|+.+-|.| ++..|.+++.||.+ +||..+.
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 99999999987 79999999999999 9998763
No 300
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.077 Score=63.08 Aligned_cols=258 Identities=16% Similarity=0.169 Sum_probs=137.1
Q ss_pred ccCCcccccCCCCCCCCCceeEEEeecCeEEEEEcCC------------eEEEeecCCcceeEEEeecChhhHHhhccee
Q 001165 4 AYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENL 71 (1134)
Q Consensus 4 ~~gwp~~~~~~~~~~~~~~~iv~fS~dg~llAs~s~~------------~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~ 71 (1134)
...|+.-..+ ...+++.+|.|..+|+..+. .|.|++.. + .+++...-. .|.+.
T Consensus 20 ~m~W~~~~~l-------~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G-~ll~~i~w~------~~~iv 84 (410)
T PF04841_consen 20 SMSWSLKDDL-------SDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-G-KLLSSIPWD------SGRIV 84 (410)
T ss_pred cCCCCccccc-------cceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-C-CEeEEEEEC------CCCEE
Confidence 4566654322 35667888888888887766 69999996 3 344443221 27889
Q ss_pred EEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecC
Q 001165 72 QAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD 151 (1134)
Q Consensus 72 ~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~d 151 (1134)
.+.|+.+ ..|++.+.||++++|++.... .+.-+.... ..+..+..+.+....+..+++-+.+
T Consensus 85 ~~~wt~~-e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~---------------~~~v~e~~i~~~~~~~~GivvLt~~ 146 (410)
T PF04841_consen 85 GMGWTDD-EELVVVQSDGTVRVYDLFGEF--QFSLGEEIE---------------EEKVLECRIFAIWFYKNGIVVLTGN 146 (410)
T ss_pred EEEECCC-CeEEEEEcCCEEEEEeCCCce--eechhhhcc---------------ccCcccccccccccCCCCEEEECCC
Confidence 9999985 566677899999999985321 110000000 0000111122222223557777777
Q ss_pred CcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCe
Q 001165 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ 231 (1134)
Q Consensus 152 g~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~ 231 (1134)
+.++... +.+...... ....+|.... ..........+ ..++.+....+....++.
T Consensus 147 ~~~~~v~-n~~~~~~~~---------~~~~~p~~~~-------------~~~~~~~~~~i--~~l~~~~~~~i~~~~g~~ 201 (410)
T PF04841_consen 147 NRFYVVN-NIDEPVKLR---------RLPEIPGLWT-------------KFHWWPSWTVI--PLLSSDRVVEILLANGET 201 (410)
T ss_pred CeEEEEe-Cccccchhh---------ccccCCCccc-------------ccccccccccc--eEeecCcceEEEEecCCE
Confidence 7776542 111000000 0001111000 00000111111 345556666666666666
Q ss_pred EEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeec
Q 001165 232 LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCR 311 (1134)
Q Consensus 232 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~ 311 (1134)
+...+..... + + ...+++..+++||+|+.||.-..+|.+.+.+.+ -.+.+..+.
T Consensus 202 i~~i~~~~~~--~---i-----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD---------------f~~~~~e~~- 255 (410)
T PF04841_consen 202 IYIIDENSFK--Q---I-----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD---------------FSEKLCEFD- 255 (410)
T ss_pred EEEEEccccc--c---c-----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECc---------------ccceeEEee-
Confidence 6654332210 0 1 112578899999999999999999999998766 222222221
Q ss_pred ccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC
Q 001165 312 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 312 ~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
.+-......+.|.-++ .++..+. ..+.+....+.
T Consensus 256 --~~~~~~p~~~~WCG~d-av~l~~~-~~l~lvg~~~~ 289 (410)
T PF04841_consen 256 --TDSKSPPKQMAWCGND-AVVLSWE-DELLLVGPDGD 289 (410)
T ss_pred --cCcCCCCcEEEEECCC-cEEEEeC-CEEEEECCCCC
Confidence 1133566788998765 3444443 46777765443
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.60 E-value=0.00012 Score=55.47 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.8
Q ss_pred ceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 455 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 455 ~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
..++.+|..+|++++|+|++++||+||.||.+ +||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45788999999999999999999999999999 997
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.59 E-value=0.031 Score=61.52 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=86.7
Q ss_pred CcccEEEEEEcCCCCeEEEEEcC--------CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEE-EeeeC
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSN--------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILA-VGTRR 277 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sD--------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llA-sG~~d 277 (1134)
.....++++++|+|++.++.... |.++.++.. .. ..... .+......++|+|+++.|. +-+..
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~----~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVA----DGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEE----EEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---EEEEe----cCcccccceEECCcchheeeccccc
Confidence 35677899999999966665433 445554443 11 11111 1124567899999998654 55677
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
+.|..|+++..+.... ..+....+.. -.+..-.+++.++|+..++.+..+.|.++|.. ++++..+.-
T Consensus 156 ~~i~~~~~~~~~~~~~--------~~~~~~~~~~----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 156 GRIWRFDLDADGGELS--------NRRVFIDFPG----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp TEEEEEEEETTTCCEE--------EEEEEEE-SS----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred ceeEEEecccccccee--------eeeeEEEcCC----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 8898888874332111 0111111111 22447789999999999998889999999998 556666654
Q ss_pred CCCCceeeeEEc
Q 001165 358 ISLSSISSPIVK 369 (1134)
Q Consensus 358 h~~~~V~sv~~s 369 (1134)
. ...+++++|.
T Consensus 223 p-~~~~t~~~fg 233 (246)
T PF08450_consen 223 P-VPRPTNCAFG 233 (246)
T ss_dssp S-SSSEEEEEEE
T ss_pred C-CCCEEEEEEE
Confidence 4 3478888884
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.56 E-value=0.014 Score=73.66 Aligned_cols=232 Identities=14% Similarity=0.090 Sum_probs=125.6
Q ss_pred cceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEE
Q 001165 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv 147 (1134)
+.++++.|--|+..|++++++|.|.+-|.++.. +.. .+.+ ..+..+.++++|.+.+++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~ei-----------------vg~v---d~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--LEI-----------------VGNV---DNGISAASWSPDEELLAL 126 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc--eee-----------------eeec---cCceEEEeecCCCcEEEE
Confidence 578999999999999999999999888775431 111 1100 111234566777777888
Q ss_pred EecCCcEEEEecCCccccceeccccCCCccccccccc-cCCCc---ccc-ccCC----Ccc----cccccCCCcccEEEE
Q 001165 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHH-FPSNG---LAS-VDTS----GAF----VSDHKFPISSAIIWL 214 (1134)
Q Consensus 148 ~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~---l~s-~~~~----~~~----~~~~~~~~~~~V~~i 214 (1134)
.|..+++....-+-+......+ .+...+...+ ..+.+ .+. ++.. ... +.......+..=++|
T Consensus 127 iT~~~tll~mT~~f~~i~E~~L-----~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I 201 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAEKPL-----DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI 201 (1265)
T ss_pred EeCCcEEEEEeccccchhcccc-----ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceE
Confidence 8877777665332111111100 0000000000 00000 000 0000 000 000111123334568
Q ss_pred EEcCCCCeEEEE-----EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEee---eCCeEEEEecc
Q 001165 215 ELCLPMRLLFVL-----YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT---RRGVVELYDLA 286 (1134)
Q Consensus 215 ~fsp~~~~la~~-----~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~---~dg~V~lwd~~ 286 (1134)
.|--||++||+. +....+.+|+..+ ..... +.. ..+--.+++|-|.|.++|+-. .|+.|.+|.-+
T Consensus 202 sWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~-se~-----~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 202 SWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNST-SEP-----VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred EEccCCcEEEEEEEeccCCceeEEEecccc-hhhcc-cCc-----ccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 999999999983 2224678887652 11111 111 112335899999999999753 35578888755
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE---EECCCcEEEEecCCC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV---GWKSRGLTVWSVSGC 349 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las---g~~Dg~I~vWdv~~~ 349 (1134)
.- .| |+-.- ..+....+|..++|+.++..||+ ......|.+|.+..-
T Consensus 275 GL---~h---------g~f~l----~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 275 GL---RH---------GEFVL----PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred Cc---cc---------ccccc----CCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 11 11 11000 11124456999999999999998 556566999988653
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00014 Score=82.74 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=111.5
Q ss_pred CCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC-------CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-eeE
Q 001165 315 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMM 386 (1134)
Q Consensus 315 ~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~-------~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~ 386 (1134)
+|+..|..++--.+.+-+++++.|++|++|++.. ..+..|...| +.+|.++.|-.+. +.++++. .+.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~igfL~~l----r~i~ScD~giH 807 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIGFLADL----RSIASCDGGIH 807 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-cCcccceeeeecc----ceeeeccCcce
Confidence 4988888887767778899999999999999842 2244555556 7789999998776 7777765 888
Q ss_pred EEeCCCceEEEEec-----CCCccEEEEec-CCEE-Eee-ecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceee
Q 001165 387 QWDEYGYRLYAIEE-----GSSERVLIFSF-GKCC-LNR-GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 458 (1134)
Q Consensus 387 ~W~~~~~~l~~~~~-----~h~~~v~~~s~-~k~l-~S~-s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~ 458 (1134)
+||+--++++.... +..+.|.++.- .+.+ ..+ +...|+++.|....+-. --|.+. .-
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~-----------~E~kVc----na 872 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT-----------CELKVC----NA 872 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce-----------eeEEec----cC
Confidence 99998777765321 22233444443 3333 333 56788998886544320 011111 11
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 459 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 459 ~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
.+.|.-++++++-+.|+.+|+|=..|.+ +-|.++|+
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 2445669999999999999999999999 99999985
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.48 E-value=0.00061 Score=80.14 Aligned_cols=73 Identities=23% Similarity=0.461 Sum_probs=59.8
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
...++|+++||+...++.||.||+|.+||.. .+....+ . ..-..+.++|+|||..+++|
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~---------------~~~t~~~--k----a~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTT---------------RGVTLLA--K----AEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcC---------------CCeeeee--e----ecccceEEEEcCCCcEEEEE
Confidence 3689999999999999999999999999987 2211111 1 23456889999999999999
Q ss_pred ECCCcEEEEecCCC
Q 001165 336 WKSRGLTVWSVSGC 349 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~ 349 (1134)
++.|.+.+||+.-.
T Consensus 318 s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 318 SEQGELQCFDMALS 331 (545)
T ss_pred cCCceEEEEEeecC
Confidence 99999999999643
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0047 Score=73.78 Aligned_cols=122 Identities=12% Similarity=0.170 Sum_probs=85.4
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
..|.--.++..+.+++.+++-|.+++++-....... .. ..| ....++...+|++..++|.|++.|.|.+|-+...
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~---~~-~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK---LK-NEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc---cc-ccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 344445668888999999999999998764432211 11 111 1233445689999999999999999999998852
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
......+. .. ....|...|+|++||+||..+.+|...|+|.+-.+..
T Consensus 109 ~p~~~~~~----------t~---~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYV----------TP---CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceee----------cc---ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21111110 00 1223788999999999999999999999998887765
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0035 Score=75.35 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
-.+++++|+|..-.+|+|+.-|.+.+|+..+ .+.... ...|+.+|.-+.|||||.+|.++.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~---------------~e~htv----~~th~a~i~~l~wS~~G~~l~t~d 120 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNT---------------TETHTV----VETHPAPIQGLDWSHDGTVLMTLD 120 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCC---------------ceeeee----ccCCCCCceeEEecCCCCeEEEcC
Confidence 4577899999999999999999999999872 221111 113999999999999999999999
Q ss_pred CCCcEEEEecC
Q 001165 337 KSRGLTVWSVS 347 (1134)
Q Consensus 337 ~Dg~I~vWdv~ 347 (1134)
.=|.+.+|...
T Consensus 121 ~~g~v~lwr~d 131 (1416)
T KOG3617|consen 121 NPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEEEee
Confidence 99999999875
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.31 E-value=0.037 Score=61.72 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=61.4
Q ss_pred eEEEEECC-CCCEEEEeeeCCe-EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcC--eEEEEECCCCCEEEE
Q 001165 259 AVCASIAP-EQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGP--VSCIAWTPDNSAFAV 334 (1134)
Q Consensus 259 ~~~va~sp-dg~llAsG~~dg~-V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~--V~~l~fSPDG~~Las 334 (1134)
.-.++.+| +...+|++-.-|+ ..+||.. +++....+.. ..+. --.-.|||||++|.+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~---------------~g~~~~~~~a----~~gRHFyGHg~fs~dG~~Lyt 67 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCR---------------TGQLLQRLWA----PPGRHFYGHGVFSPDGRLLYT 67 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcC---------------CCceeeEEcC----CCCCEEecCEEEcCCCCEEEE
Confidence 44678889 6677888888876 5678887 4444443322 1111 123679999999998
Q ss_pred EEC-----CCcEEEEecC-CCeeEEEeccCCCCceeeeEEcCCC
Q 001165 335 GWK-----SRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 335 g~~-----Dg~I~vWdv~-~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
.-. .|.|-|||+. +-+.+..+..+|- .-..+.+.||+
T Consensus 68 TEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI-GPHel~l~pDG 110 (305)
T PF07433_consen 68 TENDYETGRGVIGVYDAARGYRRIGEFPSHGI-GPHELLLMPDG 110 (305)
T ss_pred eccccCCCcEEEEEEECcCCcEEEeEecCCCc-ChhhEEEcCCC
Confidence 633 3789999998 5555666665533 23456677777
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.28 E-value=0.023 Score=63.38 Aligned_cols=249 Identities=13% Similarity=0.099 Sum_probs=122.1
Q ss_pred CceeEEEeecCe-EEEEEc-C-CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeC-----CCEEE
Q 001165 21 SQQIIYFKVNNG-LLLIAS-P-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-----SLYLH 92 (1134)
Q Consensus 21 ~~~iv~fS~dg~-llAs~s-~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~-----dg~l~ 92 (1134)
...-++.+|+.. .+|.+- . .-+.+||+... ..+.... ...-.+ -+-..+|||||++|.+.=+ .|.|-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g-~~~~~~~--a~~gRH--FyGHg~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG-QLLQRLW--APPGRH--FYGHGVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC-ceeeEEc--CCCCCE--EecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence 344566777544 344443 2 35778888633 3322221 111111 1235889999999998644 47899
Q ss_pred EEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCcc-ccceeccc
Q 001165 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF-YGAFELVH 171 (1134)
Q Consensus 93 lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~-~~~~~~~~ 171 (1134)
|||......++-. |...+ ++-++ .-+.+||+.|+++ +|-|.. ..+. ..+++++
T Consensus 81 Vyd~~~~~~ri~E--------------~~s~G---IGPHe---l~l~pDG~tLvVA--NGGI~T---hpd~GR~kLNl~- 134 (305)
T PF07433_consen 81 VYDAARGYRRIGE--------------FPSHG---IGPHE---LLLMPDGETLVVA--NGGIET---HPDSGRAKLNLD- 134 (305)
T ss_pred EEECcCCcEEEeE--------------ecCCC---cChhh---EEEcCCCCEEEEE--cCCCcc---CcccCceecChh-
Confidence 9999743222221 11011 11111 2345677788887 343321 1111 1111111
Q ss_pred cCCCccccccccccCCCccccc-cCCCccccc-cc--CCCcccEEEEEEcCCCCeEEEEEcCCe-------EEEEEeccC
Q 001165 172 SSNDSSVAALSHHFPSNGLASV-DTSGAFVSD-HK--FPISSAIIWLELCLPMRLLFVLYSNGQ-------LMSCSVSKK 240 (1134)
Q Consensus 172 ~~~~~~~i~~i~~~~~~~l~s~-~~~~~~~~~-~~--~~~~~~V~~i~fsp~~~~la~~~sDG~-------v~l~~~~~~ 240 (1134)
.+. ..++.. ..++.+... .+ ..++-.|..++++++|...+..--.|. +.+++. .
T Consensus 135 ----tM~---------psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g 199 (305)
T PF07433_consen 135 ----TMQ---------PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--G 199 (305)
T ss_pred ----hcC---------CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--C
Confidence 000 001100 111111111 12 346677888888888765444433332 111111 1
Q ss_pred CccccceecccccC-CCCCeEEEEECCCCCEEEEee-eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCc
Q 001165 241 GLKLAEFIKIDKEL-GSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG 318 (1134)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~va~spdg~llAsG~-~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g 318 (1134)
..........+.|. -.+-+-+|++++++.++|+.| ..|.+.+||.. +++.+... .-.
T Consensus 200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~---------------tg~~~~~~------~l~ 258 (305)
T PF07433_consen 200 GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA---------------TGRLLGSV------PLP 258 (305)
T ss_pred CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC---------------CCCEeecc------ccC
Confidence 10000011111111 135677999999999887666 56789999988 66655442 224
Q ss_pred CeEEEEECCCCCEEEEEEC
Q 001165 319 PVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 319 ~V~~l~fSPDG~~Lasg~~ 337 (1134)
.+..|+-.++| +++|.+.
T Consensus 259 D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 259 DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceeeeeecCCc-eEEeCCC
Confidence 46667777777 5655554
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.25 E-value=0.0026 Score=68.63 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=141.8
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCccee-----cCCCCCCCcceeeEEEeeceeeccccccceEEEeee
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~ 140 (1134)
+...+++|.|-.-|.+||+|...|.|.+|.-.....--+ .+.|+..-..+.++. ..+++ ..|.=+.+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSle--ieEKi------n~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLE--IEEKI------NAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhcc--HHHHh------hheeeecC
Confidence 345678999999999999999999999998765431111 223333211111111 11111 01111222
Q ss_pred -CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCc-ccc--------ccC-CC----cccccccC
Q 001165 141 -DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LAS--------VDT-SG----AFVSDHKF 205 (1134)
Q Consensus 141 -d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-l~s--------~~~-~~----~~~~~~~~ 205 (1134)
...++++.+.+.++.+|..-.....-.. ...++..-.++-++ +.+ .+. +. .+......
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va-------~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVA-------ENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhh-------ccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 2356788888999987643222100000 00000000000000 000 000 00 01111224
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc-ccceecccccCC-CCCeEEEEECCCC-CEEEEeeeCCeEEE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELG-SGDAVCASIAPEQ-QILAVGTRRGVVEL 282 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~va~spdg-~llAsG~~dg~V~l 282 (1134)
.|.-.|.+++|+.|...+.++ .|=++-+|++...+.. ..-.+.+..... ..-+++..|+|.. ..+.-.+..|+|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 577789999999999887765 5778889987542210 001112110000 1346788999964 45556678899999
Q ss_pred Eeccccccce---eeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC-CeeEEEeccC
Q 001165 283 YDLAESASLI---RTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI 358 (1134)
Q Consensus 283 wd~~~~~~~~---~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~-~~l~~tl~~h 358 (1134)
-|+....-+. +.+.....| -..- +..+-...|..+.|||+|+++++-+. -++++||+.- ..++.|+.-|
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~--v~~~----ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDG--VDVD----FFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhhhccCchhhhhhccCc--ccch----hHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 9998543211 111111100 0000 11123457889999999999999877 5999999964 3456666443
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.23 E-value=0.003 Score=66.90 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=59.7
Q ss_pred CCeEEEEECCCC-CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEE
Q 001165 257 GDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAV 334 (1134)
Q Consensus 257 ~~~~~va~spdg-~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Las 334 (1134)
..+++++-+|.. .++++|+.||.+-+||.++.+- +...+ ..|+.++..|-|.| ++..|.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------p~S~l----~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------PVSLL----KAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------hHHHH----HHhhhhhhheeccCCCchheeE
Confidence 447888989954 5788899999999999984311 01112 24999999999999 8889999
Q ss_pred EECCCcEEEEecCCCe
Q 001165 335 GWKSRGLTVWSVSGCR 350 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~ 350 (1134)
+++||.+--||..+.-
T Consensus 242 ~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 242 CSEDGSLWHWDASTTF 257 (319)
T ss_pred ecCCCcEEEEcCCCce
Confidence 9999999999998743
No 312
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.22 Score=59.26 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=45.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 461 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 461 h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
...++..+++||+|+++|.-..+|.+ +.+..-.+ .+....-+.......|.|.|+--|++.+ .++|.++..
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~--~~~e~~~~~~~~p~~~~WCG~dav~l~~-----~~~l~lvg~ 286 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE--KLCEFDTDSKSPPKQMAWCGNDAVVLSW-----EDELLLVGP 286 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc--eeEEeecCcCCCCcEEEEECCCcEEEEe-----CCEEEEECC
Confidence 34689999999999999999999998 76643331 1111111111234579999986665534 245666654
No 313
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0012 Score=77.76 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=60.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeE-EEEECCCCCEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVS-CIAWTPDNSAFAVG 335 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~-~l~fSPDG~~Lasg 335 (1134)
..+.-+.|||.-.+||.+..+|.|.++.+. -+.+.++.- |.-.|+ +++|.|||+.||+|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n----------------~qRlwtip~----p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN----------------WQRLWTIPI----PGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec----------------cceeEeccC----CCCccceeeeecCCCCEEEEE
Confidence 456678999999999999999999988876 122333221 444555 99999999999999
Q ss_pred ECCCcEEEEecCCCeeEE
Q 001165 336 WKSRGLTVWSVSGCRLMS 353 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~ 353 (1134)
-.||+|++-|++.+..+.
T Consensus 81 ~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ecCCeEEEEEccCCCcee
Confidence 999999999998875443
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.0013 Score=72.14 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=88.0
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAV 334 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Las 334 (1134)
.++|.+..|.-.+.++..|+.+|.|..+|+..... |.+.+...+ .|...|+++.--. ++++|.+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----------G~~~~a~rl-----yh~Ssvtslq~Lq~s~q~Lma 316 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----------GNGWCAQRL-----YHDSSVTSLQILQFSQQKLMA 316 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----------CCCcceEEE-----EcCcchhhhhhhccccceEee
Confidence 36778888888899999999999999999983210 122222222 1888999988766 8899999
Q ss_pred EECCCcEEEEecCCCee---EEEeccCCCCceeeeEEcCCCC-CCcceEEEcc---eeEEEeCCCceEEEEec
Q 001165 335 GWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQD-CKYEPLMSGT---SMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l---~~tl~~h~~~~V~sv~~sp~~~-~~~~~l~sgs---~i~~W~~~~~~l~~~~~ 400 (1134)
.+-+|+|++||..--++ +.+.+|| |+..+..|-+- ++...+++++ ..++|.+..++|+....
T Consensus 317 S~M~gkikLyD~R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 317 SDMTGKIKLYDLRATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccCcCceeEeeehhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 99999999999865444 7778777 33333333221 1113455544 67899999988887753
No 315
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.17 E-value=0.0058 Score=66.00 Aligned_cols=228 Identities=13% Similarity=0.176 Sum_probs=123.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC--EEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS--AFAV 334 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~--~Las 334 (1134)
..+++|.|...|.++|+|...|.|.+|.-...-++.-.+ ++++++-++....- .+-+-...|..+.|..++. .+..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf-~teFQshe~EFDYL-kSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKF-FTEFQSHELEFDYL-KSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhh-hhhhcccccchhhh-hhccHHHHhhheeeecCCCcceEEE
Confidence 568899999999999999999999999876432111000 00000011000000 0001234588999987665 4555
Q ss_pred EECCCcEEEEecCCCe--------------------eE-----------------EE-----eccCCCCceeeeEEcCCC
Q 001165 335 GWKSRGLTVWSVSGCR--------------------LM-----------------ST-----IRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~--------------------l~-----------------~t-----l~~h~~~~V~sv~~sp~~ 372 (1134)
...|++|++|.+.... +. +. ....|.--++++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 6678999999885321 00 00 001113346677787776
Q ss_pred CCCcceEEEcc--eeEEEeCCCc-eE--EEEecCCC-----ccE--EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 373 DCKYEPLMSGT--SMMQWDEYGY-RL--YAIEEGSS-----ERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 373 ~~~~~~l~sgs--~i~~W~~~~~-~l--~~~~~~h~-----~~v--~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
+.++|+. ++-+|+++-. +. +.-.+.|. .-| ..|+| ...+.-.+..|+|++-|+.|.....
T Consensus 185 ----et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd-- 258 (460)
T COG5170 185 ----ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD-- 258 (460)
T ss_pred ----heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc--
Confidence 7888766 8889987531 11 22223332 112 34555 3344445667889998877643310
Q ss_pred eecCCCccc--cccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEE
Q 001165 439 VQSEDTDEL--KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 497 (1134)
Q Consensus 439 ~~g~~~~~~--~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~ 497 (1134)
...... .-+.+. ..-+.+-...|..+.||++|+|+++-..- ++ +||++..+-..
T Consensus 259 ---n~~klfe~~~D~v~-~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pi 315 (460)
T COG5170 259 ---NSKKLFELTIDGVD-VDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPI 315 (460)
T ss_pred ---CchhhhhhccCccc-chhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCc
Confidence 000000 000000 01112223457788999999999865544 45 99997665333
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.001 Score=72.91 Aligned_cols=133 Identities=15% Similarity=0.163 Sum_probs=90.5
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEec
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~ 285 (1134)
.++.|.+..|...++++..+..+|.|..+++.... +..+-.....-+...++|+..=. +++.|.+.+.+|+|++||.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn--qG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN--QGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc--cCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 56778888999999999999999999998886431 11111111122456778876555 6677777789999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeE--EEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~--~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
.-.. .++-+.+..| |...-. -+-..|....++++++|...|+|++..+.++++++-
T Consensus 329 R~~K------------~~~~V~qYeG----HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 329 RATK------------CKKSVMQYEG----HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hhhh------------cccceeeeec----ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 8211 1222444444 533211 122234556788899999999999999999999865
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.05 Score=66.60 Aligned_cols=129 Identities=10% Similarity=0.072 Sum_probs=86.6
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
...++.+++.+.+.+.+|+|..||.|.++.-+-.......... .-.+.+++|.+++..+++.+.....-..|.+|.+.
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~--~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY--SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee--eccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 4567788899999999999999999988654321111111000 01245789999999999985555556689999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
..+ + .+.++.. |..+++|.+|++--..+++|+. ..+.+++..+.....++.
T Consensus 202 gr~-p-------------~~~~ld~----~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 202 GRT-P-------------SLKVLDN----NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CCC-c-------------ceeeecc----CCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 322 1 1111222 6678999999986664666655 489999998766555554
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.015 Score=70.45 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=112.5
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..++|++++- +.+|.|+.+|.|++++.+. .. ++... |... ..+|.++|||+
T Consensus 40 D~is~~av~~--~~~~~GtH~g~v~~~~~~~----------------~~-~~~~~----~s~~------~~~Gey~asCS 90 (846)
T KOG2066|consen 40 DAISCCAVHD--KFFALGTHRGAVYLTTCQG----------------NP-KTNFD----HSSS------ILEGEYVASCS 90 (846)
T ss_pred hHHHHHHhhc--ceeeeccccceEEEEecCC----------------cc-ccccc----cccc------ccCCceEEEec
Confidence 5567888765 4699999999999999871 11 11111 4333 56899999999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCC-CCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEE
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD-CKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 415 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~-~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l 415 (1134)
.||+|-|-++.+.+..+++.- ..++.+++++|+=. ..-..+++|
T Consensus 91 ~DGkv~I~sl~~~~~~~~~df--~rpiksial~Pd~~~~~sk~fv~G--------------------------------- 135 (846)
T KOG2066|consen 91 DDGKVVIGSLFTDDEITQYDF--KRPIKSIALHPDFSRQQSKQFVSG--------------------------------- 135 (846)
T ss_pred CCCcEEEeeccCCccceeEec--CCcceeEEeccchhhhhhhheeec---------------------------------
Confidence 999999999999887777654 35788999998821 000222322
Q ss_pred EeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCcE
Q 001165 416 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKW 495 (1134)
Q Consensus 416 ~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~W 495 (1134)
|.-| +.+.. . .|-.-..+.....-.++|.++.| .|.++|=++++|.-+||+.+++-
T Consensus 136 ---G~ag-lvL~e----r--------------~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~ 191 (846)
T KOG2066|consen 136 ---GMAG-LVLSE----R--------------NWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQR 191 (846)
T ss_pred ---Ccce-EEEeh----h--------------hhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccce
Confidence 2221 11000 0 00000001122334568988888 68999999999977999988743
Q ss_pred EEeCCcccee-----eeEEEEEEeeCCE-EEEEEEecCCCeeEEEEEeC
Q 001165 496 RVFGDITQEQ-----KIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 496 k~F~~~~~e~-----~~~v~gl~W~~~~-lv~~~~~~~~~~~eLrly~~ 538 (1134)
.++..-.. +..-..+.|.++. +|.| ..+.|++.+.
T Consensus 192 --l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG------W~d~v~i~~I 232 (846)
T KOG2066|consen 192 --LTNIPPPSQSVRPELFPPHLHWQDEDRLVIG------WGDSVKICSI 232 (846)
T ss_pred --eeccCCCCCCCCcccCCCceEecCCCeEEEe------cCCeEEEEEE
Confidence 23322111 1112368887654 4443 3345555554
No 319
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0043 Score=71.17 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=113.6
Q ss_pred cccccceEEEeee-C-CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccC
Q 001165 128 FAEKGLSVSNIVS-D-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1134)
Q Consensus 128 ~~~~~~~V~~~s~-d-~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~ 205 (1134)
+.++...|.++.. | .+.++++++|.+|..|+...+..+.-. + .-.....
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------s------------------aCQfTY~ 781 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------S------------------ACQFTYQ 781 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------c------------------eeeeEhh
Confidence 3445555555433 3 356888999999999887766433210 0 0001234
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEe
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYD 284 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd 284 (1134)
.|+.+|.++.|-.+.+.+++ -||.+.+|+.-...+.. +-.+..+-...+.+.|+- |-+.. ++|.++...+|+++|
T Consensus 782 aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~La-q~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 782 AHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLA-QMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred hccCcccceeeeeccceeee--ccCcceeecccccchhH-hhhcCcccCCCceeEecc-cCcchheeeeccchhhheeee
Confidence 68889999999999887665 47999999864332211 001110100112333442 22333 445557889999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeec-ccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCR-YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~-~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
.. +++....++. ..++..+.+.+++..|.|+.+|+|-.+|.|.+-|..+|..+.+.+.
T Consensus 858 aR---------------sce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 858 AR---------------SCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred cc---------------cccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 87 3332222221 1123557799999999999999999999999999999988776654
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.96 E-value=0.58 Score=51.41 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=72.7
Q ss_pred EEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEEC-CCCCEEEEeeeCCeEEEEecccccc
Q 001165 213 WLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESAS 290 (1134)
Q Consensus 213 ~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~s-pdg~llAsG~~dg~V~lwd~~~~~~ 290 (1134)
++.|.+ ++.++.+-...|+++.++....... .+. ......+++. ++++++++ .. +.+.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~---~~~------~~~~~G~~~~~~~g~l~v~-~~-~~~~~~d~~---- 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE---VID------LPGPNGMAFDRPDGRLYVA-DS-GGIAVVDPD---- 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE---EEE------SSSEEEEEEECTTSEEEEE-ET-TCEEEEETT----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE---EEe------cCCCceEEEEccCCEEEEE-Ec-CceEEEecC----
Confidence 467887 4444444446777777766443211 111 1236778888 67666554 44 445666876
Q ss_pred ceeeeeeeccCcceEEEEeecccCC-CCcCeEEEEECCCCCEEEEEECC--------CcEEEEecCCCeeEEEeccCCCC
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYSMD-DTGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~~~-h~g~V~~l~fSPDG~~Lasg~~D--------g~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
+++........... .....+.+++.|||+..++.... |.+..++.. ++......+ ..
T Consensus 69 -----------~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~ 134 (246)
T PF08450_consen 69 -----------TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LG 134 (246)
T ss_dssp -----------TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ES
T ss_pred -----------CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cc
Confidence 33222111111011 23467999999999987776544 446666666 443333332 34
Q ss_pred ceeeeEEcCCC
Q 001165 362 SISSPIVKPNQ 372 (1134)
Q Consensus 362 ~V~sv~~sp~~ 372 (1134)
..+.++|+|++
T Consensus 135 ~pNGi~~s~dg 145 (246)
T PF08450_consen 135 FPNGIAFSPDG 145 (246)
T ss_dssp SEEEEEEETTS
T ss_pred cccceEECCcc
Confidence 57899999998
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.003 Score=74.52 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=57.4
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeE-EEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..|.-+.|+|...++|.++.+|.+.+.+.+-.+. |.... +..+++ |++|.|||++||+|-.||+|++-|+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRl------wtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRL------WTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecccee------EeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 4577899999999999999999999888764333 22111 124555 99999999999999999999999998
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.018 Score=69.78 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=98.3
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
++|.+-.++.++.|+.+|.|+....++.....+ .|...
T Consensus 42 is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~--------------------------------------~~s~~---- 79 (846)
T KOG2066|consen 42 ISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNF--------------------------------------DHSSS---- 79 (846)
T ss_pred HHHHHhhcceeeeccccceEEEEecCCcccccc--------------------------------------ccccc----
Confidence 445555678899999999999876665431111 11111
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-----CCEEEEeeeCCeEEEEeccccc
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-----QQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-----g~llAsG~~dg~V~lwd~~~~~ 289 (1134)
...|.++++++.||++.+-..-...... .+. ....+.+|+++|+ .+.+++|+..| +.++.-. .-
T Consensus 80 --~~~Gey~asCS~DGkv~I~sl~~~~~~~--~~d-----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~-wl 148 (846)
T KOG2066|consen 80 --ILEGEYVASCSDDGKVVIGSLFTDDEIT--QYD-----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN-WL 148 (846)
T ss_pred --ccCCceEEEecCCCcEEEeeccCCccce--eEe-----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh-hh
Confidence 5678899999999999886553322211 111 1256779999998 45788999888 7776533 11
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
+....+ .+. .-.|+|.++.|. |+++|=++++ +|+|+|+..++.+..++.
T Consensus 149 gnk~~v------------~l~----~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 149 GNKDSV------------VLS----EGEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred cCccce------------eee----cCccceEEEEec--CcEEEEecCC-CcEEEeccccceeeccCC
Confidence 111111 111 257899999996 6788877765 899999998887766654
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.88 E-value=0.013 Score=71.64 Aligned_cols=177 Identities=16% Similarity=0.063 Sum_probs=115.0
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
+..+..|+--..+..+|+. +.+..+...- ..+.|+-++ .+++.+.+|...|+|.+=|..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~---------------~~~e~r~~~v----~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~ 205 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLN---------------TEKETRTTNV----SASGVTIMR--YNNRNLFCGDTRGTVFLRDPN 205 (1118)
T ss_pred Ccceeecchhhheeeeecc---------------cceeeeeeec----cCCceEEEE--ecCcEEEeecccceEEeecCC
Confidence 3456666666666677777 3443333221 233466665 468999999999999999999
Q ss_pred CCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc------------eeEEEeCCCceEEEEecCCC-ccEEEEec--C
Q 001165 348 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGSS-ERVLIFSF--G 412 (1134)
Q Consensus 348 ~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------------~i~~W~~~~~~l~~~~~~h~-~~v~~~s~--~ 412 (1134)
+.+.++++..| .+.++.... .| +.+++++ -+++||++..+.+.-..=+. ..++.|.| .
T Consensus 206 s~~~iht~~aH-s~siSDfDv--~G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~ 278 (1118)
T KOG1275|consen 206 SFETIHTFDAH-SGSISDFDV--QG----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT 278 (1118)
T ss_pred cCceeeeeecc-ccceeeeec--cC----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccccc
Confidence 99999999988 667776544 34 5676655 36788888776654332222 23466766 4
Q ss_pred CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCc-eEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 413 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 413 k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~-V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
..++..+..|....-|...-.. |. .-..+...+.+ +...++|++|+.+|.|..+|.+ +|.
T Consensus 279 t~~~V~S~sGq~q~vd~~~lsN----------P~-------~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 279 TRLAVTSQSGQFQFVDTATLSN----------PP-------AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEEecccceeeccccccCC----------Cc-------cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 5556666666666554211111 00 00112233333 8899999999999999999999 997
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.00061 Score=81.91 Aligned_cols=182 Identities=11% Similarity=0.095 Sum_probs=111.7
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
...-||++|+-+.+.|++|+-.|.|++|++. +|........ |..+|+.|.=|-||..+.+.
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~---------------sG~~e~s~nc----H~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVS---------------SGSMEESVNC----HQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEcc---------------Cccccccccc----cccccccccccCCcceeeee
Confidence 3557899999999999999999999999999 6666555555 99999999999999976665
Q ss_pred EC-CC-cEEEEecCC-CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEE-ecCCCccEEEEe
Q 001165 336 WK-SR-GLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAI-EEGSSERVLIFS 410 (1134)
Q Consensus 336 ~~-Dg-~I~vWdv~~-~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~-~~~h~~~v~~~s 410 (1134)
+. .. -..+|+... +...+++.+. .++.|+... .+..+-+.. ...++|++++..+.+ +.+ ....+
T Consensus 1162 ss~S~PlsaLW~~~s~~~~~Hsf~ed-----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~----~~~~~ 1230 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFDED-----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTD----TVTSS 1230 (1516)
T ss_pred ccccCchHHHhccccccCcccccccc-----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCc----chhhh
Confidence 43 22 578999853 3445555442 345565432 112222222 778899988765544 211 11222
Q ss_pred cCCEEEeeecCCcEEe-----eeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 411 FGKCCLNRGVSGMTYA-----RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 411 ~~k~l~S~s~d~ti~~-----w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
..+.+++-+++-+..+ ||+...+. ...+-.-+. --.-.|.|.|.-+++-+
T Consensus 1231 y~~n~a~FsP~D~LIlndGvLWDvR~~~a--------------------Ih~FD~ft~-~~~G~FHP~g~eVIINS---- 1285 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLILNDGVLWDVRIPEA--------------------IHRFDQFTD-YGGGGFHPSGNEVIINS---- 1285 (1516)
T ss_pred hhccccccCCCcceEeeCceeeeeccHHH--------------------Hhhhhhhee-cccccccCCCceEEeec----
Confidence 2334444454444443 54432211 111111111 11346899999888765
Q ss_pred EEEEccC
Q 001165 486 ILYDIRQ 492 (1134)
Q Consensus 486 ilwd~~s 492 (1134)
-+||++|
T Consensus 1286 EIwD~RT 1292 (1516)
T KOG1832|consen 1286 EIWDMRT 1292 (1516)
T ss_pred hhhhhHH
Confidence 3699876
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.83 E-value=0.0031 Score=45.66 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.8
Q ss_pred CCcCeEEEEECCCCCEEEEEECCCcEEEEe
Q 001165 316 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
|.+.|.+++|+|++..+++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 889999999999999999999999999996
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.82 E-value=0.62 Score=55.20 Aligned_cols=248 Identities=16% Similarity=0.124 Sum_probs=123.1
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEe
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWd 345 (1134)
+..+.+|+.+|.+..+|.+ +|+.+.+... .+.+.+ +| .+..+.++..+|.+.-.|
T Consensus 120 ~~~v~v~~~~g~l~ald~~---------------tG~~~W~~~~-----~~~~~s---sP~v~~~~v~v~~~~g~l~ald 176 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE---------------DGEVAWQTKV-----AGEALS---RPVVSDGLVLVHTSNGMLQALN 176 (394)
T ss_pred CCEEEEEcCCCEEEEEECC---------------CCCCcccccC-----CCceec---CCEEECCEEEEECCCCEEEEEE
Confidence 4556678889999999988 6666554321 122211 12 234556677788899999
Q ss_pred cCCCeeEEEeccCCCC----ceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEec-CCC---c---cE--EEEe
Q 001165 346 VSGCRLMSTIRQISLS----SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEE-GSS---E---RV--LIFS 410 (1134)
Q Consensus 346 v~~~~l~~tl~~h~~~----~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~-~h~---~---~v--~~~s 410 (1134)
..+++.+-........ ...++.... + ..++... .+...+..+++..-... +.. . ++ ...+
T Consensus 177 ~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~----~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 177 ESDGAVKWTVNLDVPSLTLRGESAPATAF-G----GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred ccCCCEeeeecCCCCcccccCCCCCEEEC-C----EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 9888877665432100 001111111 1 1222211 45555665554322111 000 0 00 0011
Q ss_pred c---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-
Q 001165 411 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 486 (1134)
Q Consensus 411 ~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i- 486 (1134)
| +..+..++.++.+...|..+++. .|... + +. ....+ .+|..|.+++.+|.+
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~tG~~-------------~W~~~-----~-~~---~~~~~--~~~~~vy~~~~~g~l~ 307 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLRSGQI-------------VWKRE-----Y-GS---VNDFA--VDGGRIYLVDQNDRVY 307 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECCCCCE-------------EEeec-----C-CC---ccCcE--EECCEEEEEcCCCeEE
Confidence 1 33444455566666666544432 34321 0 00 00111 245667777788888
Q ss_pred EEEccCCc--EEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEE--ec
Q 001165 487 LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VY 562 (1134)
Q Consensus 487 lwd~~sg~--Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~--~~ 562 (1134)
..|..+|+ |+.- .. .. .........++.++++ +.+..|.+++. ++..++++.++....+.-+ +.
T Consensus 308 ald~~tG~~~W~~~-~~-~~--~~~~sp~v~~g~l~v~-----~~~G~l~~ld~---~tG~~~~~~~~~~~~~~s~P~~~ 375 (394)
T PRK11138 308 ALDTRGGVELWSQS-DL-LH--RLLTAPVLYNGYLVVG-----DSEGYLHWINR---EDGRFVAQQKVDSSGFLSEPVVA 375 (394)
T ss_pred EEECCCCcEEEccc-cc-CC--CcccCCEEECCEEEEE-----eCCCEEEEEEC---CCCCEEEEEEcCCCcceeCCEEE
Confidence 88887774 5421 00 00 1112222345666655 23345666655 3456778776643222211 25
Q ss_pred CCEEEEEEcCCeEEEEE
Q 001165 563 EDYILVTYRPFDVHIFH 579 (1134)
Q Consensus 563 ~d~llv~~~d~~i~l~~ 579 (1134)
++.+++.+.++.++.++
T Consensus 376 ~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 376 DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCceEEEEe
Confidence 67888888888777664
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.68 E-value=0.34 Score=56.52 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=46.7
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecCh---------h-hHH-h-hcceeEEEEcCCceEEEEEeCC-
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---------E-SVQ-R-EGENLQAVWSPDTKLIAVVTSS- 88 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~---------~-sl~-~-~G~~~~v~wSPDg~~Lav~t~d- 88 (1134)
.....+||||+.+|.+.++.|.+++.... .. ....... + -.+ + .+....+.|||||++||...-|
T Consensus 45 ~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRDNNLYLRDLATG-QE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp BSEEEE-SSSTEEEEEETTEEEEESSTTS-EE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred cccceeecCCCeeEEEecCceEEEECCCC-Ce-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 45578999999999999999999987522 21 1111111 0 011 1 3456789999999999988654
Q ss_pred CEEEEEEEEe
Q 001165 89 LYLHIFKVQI 98 (1134)
Q Consensus 89 g~l~lw~l~~ 98 (1134)
..++.+.+..
T Consensus 123 ~~v~~~~~~~ 132 (353)
T PF00930_consen 123 REVPEYPLPD 132 (353)
T ss_dssp TTS-EEEEEE
T ss_pred cCCceEEeec
Confidence 4466666643
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.50 E-value=0.16 Score=61.83 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=56.0
Q ss_pred CCcEEEEecCC-----CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceE------------E
Q 001165 338 SRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRL------------Y 396 (1134)
Q Consensus 338 Dg~I~vWdv~~-----~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l------------~ 396 (1134)
+++|.|.|..+ ...+..+.-. .....+.++||+ +.+.... ++-+.|....+- .
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDG----kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDG----KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCC----CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 35688888876 4556666542 356788999999 6554433 777788766431 2
Q ss_pred EEecCCCccE-EEEec-CCEEEeeecCCcEEeeeeee
Q 001165 397 AIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 397 ~~~~~h~~~v-~~~s~-~k~l~S~s~d~ti~~w~l~~ 431 (1134)
....-..+++ .+|+. |....|-..|..+-.|++..
T Consensus 369 aevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2211123333 66766 66667777888888999654
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.45 E-value=1 Score=53.84 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHcCCCCCchhHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHHhcCch
Q 001165 771 LHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPE 850 (1134)
Q Consensus 771 L~~il~~ll~~~~~~~a~~~a~~~~~l~~F~h~LE~lLh~vLe~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~f~~ 850 (1134)
-+.++++|-++|..+.|++++. .|+ .-....++ . +
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~-----------------------------------D~~-----~rFeLAl~----l-g 332 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT-----------------------------------DPD-----HRFELALQ----L-G 332 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------------------------------------HH-----HHHHHHHH----C-T
T ss_pred HHHHHHHHHHCCCHHHHHhhcC-----------------------------------ChH-----HHhHHHHh----c-C
Confidence 4567888888899999997754 121 12222221 2 3
Q ss_pred hHHHHHhhccccc-ccchHHhHhccCChHHHHHHHHhcCcHHHHHhHHhhhhhccCc------hhhHHHHHHHHHHHhcc
Q 001165 851 YLNVVVSVARKTD-GRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGP------AVSQYSALRLLQATLDE 923 (1134)
Q Consensus 851 ~l~ivv~caRKtE-~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~------~~~~~~a~~Ll~~al~~ 923 (1134)
=|++...+|++++ ...|+.| -+.+|+.|+++.|-.++-=..++++. ..+++...+|.+.|.++
T Consensus 333 ~L~~A~~~a~~~~~~~~W~~L----------g~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 333 NLDIALEIAKELDDPEKWKQL----------GDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp -HHHHHHHCCCCSTHHHHHHH----------HHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCcHHHHHHH----------HHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 4788889999987 5577765 56788888888888777544444433 23477788888999999
Q ss_pred chHhHHHHHH
Q 001165 924 CLYELAGELV 933 (1134)
Q Consensus 924 ~~w~l~~eL~ 933 (1134)
+++..|+.-.
T Consensus 403 ~~~n~af~~~ 412 (443)
T PF04053_consen 403 GDINIAFQAA 412 (443)
T ss_dssp T-HHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9998776543
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.13 Score=57.96 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=56.8
Q ss_pred CCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEE
Q 001165 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAV 334 (1134)
Q Consensus 257 ~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Las 334 (1134)
.-|..++|||..+ ++..++.+.+|+|.|+. +.....+... | ..+.+++|.-|.. +|..
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dle---------------t~~~vssy~a----~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLE---------------TSCVVSSYIA----Y-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecc---------------cceeeeheec----c-CCceeeeeccCCcceeEE
Confidence 3466899999877 88999999999999998 4444433322 4 7899999998766 6777
Q ss_pred EECCCcEEEEecCC
Q 001165 335 GWKSRGLTVWSVSG 348 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~ 348 (1134)
|-.+|.|-|+|+..
T Consensus 254 Gl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQ 267 (463)
T ss_pred eccCceEEEEEccC
Confidence 77889999999964
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.29 E-value=0.055 Score=64.18 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=61.2
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
.+..+.|.+++++|+...++.|+.||.+.+|+......... . ..-.++.++|+|+|..+++|+..|.+.+||
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---k-----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---K-----AEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---e-----ecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 35578899999999999999999999999999865432211 1 113467899999999999999999999999
Q ss_pred ccc
Q 001165 285 LAE 287 (1134)
Q Consensus 285 ~~~ 287 (1134)
+.-
T Consensus 328 ~AL 330 (545)
T PF11768_consen 328 MAL 330 (545)
T ss_pred eec
Confidence 973
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.22 E-value=0.72 Score=53.84 Aligned_cols=79 Identities=10% Similarity=-0.032 Sum_probs=44.4
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc--e---ecc--cccCC----CCCeEEEEECCCCCEEEEeee
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE--F---IKI--DKELG----SGDAVCASIAPEQQILAVGTR 276 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~--~---~~~--~~~~~----~~~~~~va~spdg~llAsG~~ 276 (1134)
...+....|||+|+.++.+. ++.+++.+.......+.. + +.. ..|.- .+.-..+-||||++.||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45667789999999999885 678888765433221111 1 000 00100 122346889999999998764
Q ss_pred -CCeEEEEeccc
Q 001165 277 -RGVVELYDLAE 287 (1134)
Q Consensus 277 -dg~V~lwd~~~ 287 (1134)
+..|+.+.+..
T Consensus 121 d~~~v~~~~~~~ 132 (353)
T PF00930_consen 121 DEREVPEYPLPD 132 (353)
T ss_dssp E-TTS-EEEEEE
T ss_pred CCcCCceEEeec
Confidence 45666666543
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.049 Score=61.97 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=69.2
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceee-eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~-l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
+..++.++.++|-+..+.+....|.|.-|..+..-...++ +.. ...+.+-+..+.. .++..+++.|||+|..++
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~-~~K~eTdLy~f~K----~Kt~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF-ELKHETDLYGFPK----AKTEPTSFEFSPDGAQIS 217 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccc-cccccchhhcccc----cccCccceEEccccCccc
Confidence 5688999999999999999999999999998842111111 000 0001111211111 456678999999999999
Q ss_pred EEECCCcEEEEecCCCeeEEEec
Q 001165 334 VGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 334 sg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
+-+.|..|+++...++++++.+.
T Consensus 218 tl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccCcccEEEEEEeccchhhhhhh
Confidence 99999999999999998876654
No 334
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.02 E-value=0.97 Score=48.99 Aligned_cols=179 Identities=17% Similarity=0.088 Sum_probs=94.4
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
++..+.+++.++.+..||.. +|+.+.+... .+..... . ..++..++++..|+.+..+|.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~---------------tG~~~W~~~~--~~~~~~~---~-~~~~~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAK---------------TGKVLWRFDL--PGPISGA---P-VVDGGRVYVGTSDGSLYALDA 93 (238)
T ss_dssp ETTEEEEEETTSEEEEEETT---------------TSEEEEEEEC--SSCGGSG---E-EEETTEEEEEETTSEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECC---------------CCCEEEEeec--cccccce---e-eecccccccccceeeeEeccc
Confidence 45556666899999999998 6777766542 0011111 1 235566677778889999998
Q ss_pred CCCeeEEEe-ccCC-C-C--ceeeeEEcCCCCCCcceEEEc--ceeEEEeCCCceEEEEecCCCcc----E-------EE
Q 001165 347 SGCRLMSTI-RQIS-L-S--SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSER----V-------LI 408 (1134)
Q Consensus 347 ~~~~l~~tl-~~h~-~-~--~V~sv~~sp~~~~~~~~l~sg--s~i~~W~~~~~~l~~~~~~h~~~----v-------~~ 408 (1134)
.++....+. .... . . ......+. + ...++.. ..+..+|+.+|+++-....+... + ..
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVD--G---DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGS 168 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEE--T---TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEE
T ss_pred CCcceeeeeccccccccccccccCceEe--c---CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccc
Confidence 888877763 3210 0 0 11122222 2 0233332 37888998888775544332211 1 11
Q ss_pred Eec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-
Q 001165 409 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 486 (1134)
Q Consensus 409 ~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i- 486 (1134)
... ...+...+.++.+...|+.+++ ..|... +. .+ ......+|..|++++.+|.+
T Consensus 169 ~~~~~~~v~~~~~~g~~~~~d~~tg~-------------~~w~~~--~~-------~~-~~~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 169 PVISDGRVYVSSGDGRVVAVDLATGE-------------KLWSKP--IS-------GI-YSLPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp EECCTTEEEEECCTSSEEEEETTTTE-------------EEEEEC--SS--------E-CECEECCCTEEEEEETTTEEE
T ss_pred eEEECCEEEEEcCCCeEEEEECCCCC-------------EEEEec--CC-------Cc-cCCceeeCCEEEEEeCCCEEE
Confidence 111 1223233333321111332222 123111 11 01 11245788889988899999
Q ss_pred EEEccCCc
Q 001165 487 LYDIRQKK 494 (1134)
Q Consensus 487 lwd~~sg~ 494 (1134)
.||..+|+
T Consensus 226 ~~d~~tG~ 233 (238)
T PF13360_consen 226 ALDLKTGK 233 (238)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
Confidence 99999985
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.00 E-value=2.1 Score=46.33 Aligned_cols=212 Identities=16% Similarity=0.058 Sum_probs=109.1
Q ss_pred eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 276 RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 276 ~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
.+|+|..||.. +|+.+.+..- .....+.+. . ..+++..+.+++.++.+..||..+++.+.+.
T Consensus 1 ~~g~l~~~d~~---------------tG~~~W~~~~-~~~~~~~~~-~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 1 DDGTLSALDPR---------------TGKELWSYDL-GPGIGGPVA-T-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp -TSEEEEEETT---------------TTEEEEEEEC-SSSCSSEEE-T-EEEETTEEEEEETTSEEEEEETTTSEEEEEE
T ss_pred CCCEEEEEECC---------------CCCEEEEEEC-CCCCCCccc-e-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe
Confidence 36888999987 6777666431 111222221 1 3346777777889999999999888877665
Q ss_pred ccCCCCceeeeEEcCCCCCCcceE-EEcc-eeEEEeCCCceEEEE-ecCCC--cc---EEEEec-CCEEEeeecCCcEEe
Q 001165 356 RQISLSSISSPIVKPNQDCKYEPL-MSGT-SMMQWDEYGYRLYAI-EEGSS--ER---VLIFSF-GKCCLNRGVSGMTYA 426 (1134)
Q Consensus 356 ~~h~~~~V~sv~~sp~~~~~~~~l-~sgs-~i~~W~~~~~~l~~~-~~~h~--~~---v~~~s~-~k~l~S~s~d~ti~~ 426 (1134)
.-. ..+.......++ ..+ .+.. .+..+|..++++.-. ..... .. ...... ++.++.+..++.+..
T Consensus 63 ~~~--~~~~~~~~~~~~----~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 136 (238)
T PF13360_consen 63 DLP--GPISGAPVVDGG----RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVA 136 (238)
T ss_dssp ECS--SCGGSGEEEETT----EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEE
T ss_pred ecc--ccccceeeeccc----ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEE
Confidence 532 111111111122 233 3322 788899777665444 22211 11 122222 666677777778887
Q ss_pred eeeeeCCCeEEEeecCCCccccccc-cccceeecc---CCCceEEEEEcCCCCEEEEEeCCCe-EEEEccCCc--EEEeC
Q 001165 427 RQVIYGEDRLLVVQSEDTDELKILH-LNLPVSYIS---QNWPVQHVAASKDGMFLAVAGLHGL-ILYDIRQKK--WRVFG 499 (1134)
Q Consensus 427 w~l~~~~~~l~l~~g~~~~~~~w~~-~~~~~~~~~---h~~~V~~va~SpdG~~LAsgg~dG~-ilwd~~sg~--Wk~F~ 499 (1134)
.|..+|.. .|+. ...+. ... ....+..-.+..+| .+.+++.+|. +..|..+++ |+.-
T Consensus 137 ~d~~tG~~-------------~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 137 LDPKTGKL-------------LWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EETTTTEE-------------EEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EecCCCcE-------------EEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 77655543 2221 11111 000 01112333333355 7777887884 444999997 6321
Q ss_pred CccceeeeEEEE-EEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 500 DITQEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 500 ~~~~e~~~~v~g-l~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
... ... +.-.++.+++++ .+..|.+++.
T Consensus 201 -~~~-----~~~~~~~~~~~l~~~~-----~~~~l~~~d~ 229 (238)
T PF13360_consen 201 -ISG-----IYSLPSVDGGTLYVTS-----SDGRLYALDL 229 (238)
T ss_dssp -SS------ECECEECCCTEEEEEE-----TTTEEEEEET
T ss_pred -CCC-----ccCCceeeCCEEEEEe-----CCCEEEEEEC
Confidence 111 222 333455565552 2356777765
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.0089 Score=72.40 Aligned_cols=150 Identities=14% Similarity=0.171 Sum_probs=94.3
Q ss_pred CCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-----eeEEEeC
Q 001165 316 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQWDE 390 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-----~i~~W~~ 390 (1134)
|+..-+|++||-+.+.|++|+..|.|+++++++|....+...| .+.|+.+.-+.+| ..+.+.+ -+.+|+.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dg----s~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDG----STQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCc----ceeeeeccccCchHHHhcc
Confidence 8888999999999999999999999999999999887777777 6788888888887 4444333 3457887
Q ss_pred CC-ceEEEEecCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEE
Q 001165 391 YG-YRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 467 (1134)
Q Consensus 391 ~~-~~l~~~~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~ 467 (1134)
.. +.....+.+ ..-+.|+- ...++.... ....++|+.++...... .....+.+..=++
T Consensus 1175 ~s~~~~~Hsf~e--d~~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l~ty----------------lt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE--DKAVKFSNSLQFRALGTEA-DDALLYDVQTCSPLQTY----------------LTDTVTSSYSNNL 1235 (1516)
T ss_pred ccccCccccccc--cceeehhhhHHHHHhcccc-cceEEEecccCcHHHHh----------------cCcchhhhhhccc
Confidence 53 222222211 12233332 111122222 34566776554431100 0111123333468
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEccCC
Q 001165 468 VAASKDGMFLAVAGLHGLILYDIRQK 493 (1134)
Q Consensus 468 va~SpdG~~LAsgg~dG~ilwd~~sg 493 (1134)
+.|||+.+.+. .|| ++||++..
T Consensus 1236 a~FsP~D~LIl---ndG-vLWDvR~~ 1257 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDG-VLWDVRIP 1257 (1516)
T ss_pred cccCCCcceEe---eCc-eeeeeccH
Confidence 99999999886 566 56999764
No 337
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.045 Score=62.29 Aligned_cols=205 Identities=12% Similarity=0.100 Sum_probs=119.7
Q ss_pred CCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CCcEEEE
Q 001165 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW 344 (1134)
Q Consensus 266 pdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg~I~vW 344 (1134)
-..+++.+++.||.++.|.-.... .-+-+..+. .|.+.|.+++-|-||..++|.+. |..++++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~is------------GvEfVKhFr----aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRIS------------GVEFVKHFR----AHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCcc------------ceeehhhhH----HHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 456789999999999999865211 011222222 38899999999999999999888 9999999
Q ss_pred ecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEc----ceeEEEeCCCce--EEEEecCCCccEE--EEec-CCEE
Q 001165 345 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYR--LYAIEEGSSERVL--IFSF-GKCC 415 (1134)
Q Consensus 345 dv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg----s~i~~W~~~~~~--l~~~~~~h~~~v~--~~s~-~k~l 415 (1134)
|+..--.+.-++-.-.........+|.+.. ..++-+ ..+.+.|..+.- ....-.-|..+|. .+.+ +.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 997644332222110111111122222100 111111 155666664432 2222234777773 3444 8888
Q ss_pred EeeecCCcEEeeeeeeCCCeEEEeecCCCcccccc--ccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 416 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL--HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 416 ~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~--~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
+|....|.|..|...-.-+ .. ...+.|. +-.-.-.+.-......++.|||+|..+++-+.|..| +++..+
T Consensus 160 vSiD~~gmVEyWs~e~~~q---fP----r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQ---FP----RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred eeccccceeEeecCCCccc---Cc----cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 8888899999998431000 00 0001121 000000111122335689999999999999999999 999998
Q ss_pred CcE
Q 001165 493 KKW 495 (1134)
Q Consensus 493 g~W 495 (1134)
|+-
T Consensus 233 Gkl 235 (558)
T KOG0882|consen 233 GKL 235 (558)
T ss_pred chh
Confidence 864
No 338
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.67 E-value=1.8 Score=51.37 Aligned_cols=214 Identities=13% Similarity=0.124 Sum_probs=97.9
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEE-cc-eeEEEeCCCceEEEEecCCCcc
Q 001165 328 DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIEEGSSER 405 (1134)
Q Consensus 328 DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s-gs-~i~~W~~~~~~l~~~~~~h~~~ 405 (1134)
++..+..++.+|.+..+|..+++..-+.+..+ ....++... ++ ..++. +. .+...|.++++.+-........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 45667778888999999998887766554321 111122221 22 22322 21 5677787766654332211100
Q ss_pred EE---EEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccc-ccceeeccCCCceEEEEEcC--CCCE
Q 001165 406 VL---IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLPVSYISQNWPVQHVAASK--DGMF 476 (1134)
Q Consensus 406 v~---~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~-~~~~~~~~h~~~V~~va~Sp--dG~~ 476 (1134)
+. .-+| ...+..++.++.+...+..+++. .|+.. ..|... ........+.-+| .+..
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~-------------~W~~~~~~~~~~-~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL-------------IWQQRISQPTGA-TEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh-------------hheeccccCCCc-cchhcccccCCCcEEECCE
Confidence 00 0011 22333344455555544433332 45321 111000 0000000111122 2456
Q ss_pred EEEEeCCCeE-EEEccCCc--EEE-eCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEec
Q 001165 477 LAVAGLHGLI-LYDIRQKK--WRV-FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL 552 (1134)
Q Consensus 477 LAsgg~dG~i-lwd~~sg~--Wk~-F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l 552 (1134)
+.+++.+|.+ .+|..+|+ |+. ++. ...+.-.++.+.++ +.+..+..++.. +...+|+...
T Consensus 259 vy~~~~~g~l~ald~~tG~~~W~~~~~~--------~~~~~~~~~~vy~~-----~~~g~l~ald~~---tG~~~W~~~~ 322 (394)
T PRK11138 259 VYALAYNGNLVALDLRSGQIVWKREYGS--------VNDFAVDGGRIYLV-----DQNDRVYALDTR---GGVELWSQSD 322 (394)
T ss_pred EEEEEcCCeEEEEECCCCCEEEeecCCC--------ccCcEEECCEEEEE-----cCCCeEEEEECC---CCcEEEcccc
Confidence 6777788888 88988874 653 111 01122234444443 122345555442 2334454321
Q ss_pred -C----CccEEEEecCCEEEEEEcCCeEEEEEE
Q 001165 553 -L----AKPIVMDVYEDYILVTYRPFDVHIFHV 580 (1134)
Q Consensus 553 -~----~~~~~l~~~~d~llv~~~d~~i~l~~~ 580 (1134)
. +.|+ +.++.+.+...++.+..++.
T Consensus 323 ~~~~~~~sp~---v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 323 LLHRLLTAPV---LYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred cCCCcccCCE---EECCEEEEEeCCCEEEEEEC
Confidence 1 1222 24677888888887777654
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.56 E-value=5 Score=45.71 Aligned_cols=165 Identities=17% Similarity=0.154 Sum_probs=83.3
Q ss_pred CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeE-EEEECCCCCEEEEeeeCCeEEEEeccccc-cceeeeeee
Q 001165 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLY 298 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~va~spdg~llAsG~~dg~V~lwd~~~~~-~~~~~l~l~ 298 (1134)
+.|...+.||++..+.++..+... +.....-....+.+. .-++...+..+..-+.+|.|+--++.... ......++.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 457778888887777775333211 111100001112222 22344455555556788888887776443 111222221
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE---E-----CCC--cEEEEecCCCeeEEEeccCCCCceeeeEE
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG---W-----KSR--GLTVWSVSGCRLMSTIRQISLSSISSPIV 368 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg---~-----~Dg--~I~vWdv~~~~l~~tl~~h~~~~V~sv~~ 368 (1134)
.....+. ++ ..|.-.-+++++..++|.+- + +|+ .|-++|+.+++.+..+.-. .++.++++
T Consensus 227 t~~e~~~-----~W---rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~V 296 (342)
T PF06433_consen 227 TDAEKAD-----GW---RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAV 296 (342)
T ss_dssp -HHHHHT-----TE---EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEE
T ss_pred Ccccccc-----Cc---CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEE
Confidence 0000000 00 12334456777665555442 1 222 3566688889888888642 36789999
Q ss_pred cCCCCCCcceEE---Ecc--eeEEEeCCCceEEEEec
Q 001165 369 KPNQDCKYEPLM---SGT--SMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 369 sp~~~~~~~~l~---sgs--~i~~W~~~~~~l~~~~~ 400 (1134)
+.+. ++++ ++. .+.++|..+++++....
T Consensus 297 sqd~----~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 297 SQDD----KPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ESSS----S-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccCC----CcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 8887 4332 222 78899999999887764
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.52 E-value=0.064 Score=64.49 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=84.3
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
-+|+...++.+.+|++.|.++.+.-.+.....+ ...+..+.+..+
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-----------------------------------~~~~~~~~~~~~ 82 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-----------------------------------KNEGATGITCVR 82 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcc-----------------------------------cccCccceEEEE
Confidence 468888899999999999999876443321111 111245566677
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..|++..++|+++..|+|.++..+...+....-..+....+...|||++|++++..+-+|...|+|.+-.++
T Consensus 83 ~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 83 SVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred EecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 889999999999999999998876633322111111111245789999999999999999999999998887
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.19 Score=63.18 Aligned_cols=102 Identities=14% Similarity=0.237 Sum_probs=68.8
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
.+..++++++.|.+...+..+. ... -++.+ ...++|+|++||.+|++++.|-.+|.|.+||+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~--~~~ne--~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~------------ 160 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGP--LHQNE--RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH------------ 160 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cch--hhcCC--ccCCcceeeEecCCCceeccccCCCcEEEEEcc------------
Confidence 3456888888888876554331 110 12211 124789999999999999999999999999998
Q ss_pred ccCcceEEEEeecccCCCCc---CeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 299 DWGMREVYYTFCRYSMDDTG---PVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g---~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
.++.++.+.. |.. .|..+.|..++..+.++..-|. +|..
T Consensus 161 ---~~k~l~~i~e----~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 161 ---RAKILKVITE----HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ---CCcceeeeee----cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5555555443 333 3555667778887777766554 6765
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.40 E-value=1.7 Score=47.88 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=72.0
Q ss_pred cCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 204 KFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
+.+-...+..++|+|+.+ ++++....+.++-++.++. ..+.+. ..+.++.-.|++--++.++++--.++.+.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~---vlr~i~---l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK---VLRRIP---LDGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE----SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC---EEEEEe---CCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 334445689999999866 5555556666655554321 122222 123467788899888877776556899999
Q ss_pred Eeccccccceee--eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC
Q 001165 283 YDLAESASLIRT--VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 283 wd~~~~~~~~~~--l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
+++++.+..... +.-...+ ....+...+-.|+|.|.++.|.++-+..-.+|+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLG----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEE----TT--EEEEEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEEeccccccchhhceEEecc----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 999754432211 1100101 1112556789999999999888888777777887754
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.37 E-value=0.22 Score=59.19 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=64.3
Q ss_pred EEeecCeEEEEEc----C-CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe-CCCEEEEEEEEec
Q 001165 26 YFKVNNGLLLIAS----P-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQIT 99 (1134)
Q Consensus 26 ~fS~dg~llAs~s----~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~lw~l~~~ 99 (1134)
.++||++.++..+ . ..+.+++.+++..+.. +...|.+..-+|||||++||.+. .||...||-.+..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------LNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------eccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 4688888776553 2 3588899875433211 11356777899999999988765 4566666655543
Q ss_pred CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCC---cEEEEecCCcc
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG---SLYSISWKGEF 163 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg---~v~~~~wd~~~ 163 (1134)
.+.... -.... +.+ .--++++||+.|+-++..+ .|.++++++..
T Consensus 271 ~~~~~~-Lt~~~------------------gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 271 GKNLPR-LTNGF------------------GIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCccee-cccCC------------------ccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 322110 00000 000 1235788898888777543 55666666554
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.36 E-value=2.4 Score=50.00 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=112.4
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcce-e--cCCCC---------CCCcceeeEE----------Eeeceee
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-Q--IGGKQ---------PSGLFFIKIS----------LVLNEQL 126 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~-~--~~~~~---------~~~~~~~s~~----------~~~~~~~ 126 (1134)
.++.+.|+++..-||++...|.|.||......... . .+..+ .....+..+. |.|. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~--~ 80 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL--T 80 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE--E
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch--h
Confidence 36789999999999999999999999987643211 0 00000 0001111111 1111 1
Q ss_pred ccccccceEEEeee-CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccC
Q 001165 127 PFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1134)
Q Consensus 127 ~~~~~~~~V~~~s~-d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~ 205 (1134)
.+....+.|+++.. |=..+++|..+|.+.+++..|...- +.. .++. .....
T Consensus 81 l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI-~~~--------~i~~-------------------~~~~~ 132 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVI-YNE--------NIRE-------------------SFLSK 132 (395)
T ss_dssp EE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEE-EEE--------EGGG---------------------T-S
T ss_pred heeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEE-eec--------cccc-------------------ccccc
Confidence 23334567777765 4467889999999998876543211 100 0110 00111
Q ss_pred CCcccEEEEEEcC-----CC---CeEEEEEcCCeEEEEEeccC--CccccceecccccCCCCCeEEE-EECCCC------
Q 001165 206 PISSAIIWLELCL-----PM---RLLFVLYSNGQLMSCSVSKK--GLKLAEFIKIDKELGSGDAVCA-SIAPEQ------ 268 (1134)
Q Consensus 206 ~~~~~V~~i~fsp-----~~---~~la~~~sDG~v~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~v-a~spdg------ 268 (1134)
.....|++++|+. |+ -.+.++++.|.+..+.+... +.......... ..+.+.+..+ .|+.+.
T Consensus 133 ~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~A 211 (395)
T PF08596_consen 133 SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALA 211 (395)
T ss_dssp S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-
T ss_pred ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccC
Confidence 2345666677652 22 36888899999999877421 11111100000 0111222222 132110
Q ss_pred --------------CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEE-----CCCC
Q 001165 269 --------------QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW-----TPDN 329 (1134)
Q Consensus 269 --------------~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f-----SPDG 329 (1134)
.-+++.+.+..+|++...+ .+..+.... ..-....+.+ ...+
T Consensus 212 t~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~---------------~k~~~K~~~----~~~~~~~~~vv~~~~~~~~ 272 (395)
T PF08596_consen 212 TISAMQGLSKGISIPGYVVVVSESDIRVFKPPK---------------SKGAHKSFD----DPFLCSSASVVPTISRNGG 272 (395)
T ss_dssp BHHHHHGGGGT----EEEEEE-SSEEEEE-TT------------------EEEEE-S----S-EEEEEEEEEEEE-EEEE
T ss_pred chhHhhccccCCCcCcEEEEEcccceEEEeCCC---------------Ccccceeec----cccccceEEEEeecccCCc
Confidence 1234445567888888762 222111101 1112223344 3467
Q ss_pred CEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 330 SAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 330 ~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
..|++-..+|.++++++.+-+.+..+.
T Consensus 273 ~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 273 YCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred eEEEEEECCCcEEEEECCCchHhhccc
Confidence 789999999999999998866665543
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.04 E-value=0.31 Score=58.03 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=54.7
Q ss_pred EEEEcCCCCeEEEEEcC-CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC-Ce--EEEEecccc
Q 001165 213 WLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-GV--VELYDLAES 288 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~sD-G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-g~--V~lwd~~~~ 288 (1134)
.=.|+|+|+.++.+++. |+-.+|..+..... .+.+.. .. ..-.+-.+||||+.||..+.+ |. |.++++.
T Consensus 286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~---~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~-- 358 (425)
T COG0823 286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTF---SG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA-- 358 (425)
T ss_pred CccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeec---cC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccC--
Confidence 34689999988887643 55444444322111 111111 11 111266899999999987753 44 4444444
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
++..++.+. ++.....-+|.|+|+.+...+..
T Consensus 359 -------------~~~~~~~lt-----~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 359 -------------SGGKIRILT-----STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred -------------CCCcEEEcc-----ccccCCCCCcCCCCceEEEeccC
Confidence 111122221 33344556789999988766543
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.04 E-value=0.47 Score=57.90 Aligned_cols=76 Identities=8% Similarity=-0.010 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCeEEEEEc-CCeEEEEEeccCCc------cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 211 IIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGL------KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
...+.+||||++++++.. +.++.++++.+... .....+..+.-++ ......+|.++|....+---|..|..|
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEE
Confidence 456788999998887654 77889988865332 1111122111122 234567899999988888889999999
Q ss_pred eccc
Q 001165 284 DLAE 287 (1134)
Q Consensus 284 d~~~ 287 (1134)
|+++
T Consensus 402 n~~~ 405 (635)
T PRK02888 402 NIEA 405 (635)
T ss_pred ehHH
Confidence 9984
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.97 E-value=0.014 Score=68.86 Aligned_cols=192 Identities=18% Similarity=0.229 Sum_probs=106.7
Q ss_pred CCCeEEEEECCCC--CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEE
Q 001165 256 SGDAVCASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAF 332 (1134)
Q Consensus 256 ~~~~~~va~spdg--~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~L 332 (1134)
...+.|++.+.+. .++|+|..+|.|.+-...+.-- ++ +. +.++|..+.++++|++ |-+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-----------Ss---~E---~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-----------SS---AE---VTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-----------cc---ce---ecccccccccccccccccHHHH
Confidence 4556788766654 4899999999999988763211 00 00 3445888999999999 77788
Q ss_pred EEEE----CCCcEEEEecCCCe--eEEE--eccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc--eEEEE-
Q 001165 333 AVGW----KSRGLTVWSVSGCR--LMST--IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--RLYAI- 398 (1134)
Q Consensus 333 asg~----~Dg~I~vWdv~~~~--l~~t--l~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~--~l~~~- 398 (1134)
|.|- .|..+.|||+.++. +..+ +.+.....++++++..+. ..+.+|. .++++|.+.. +.-.+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~----klvlaGm~sr~~~ifdlRqs~~~~~svn 194 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT----KLVLAGMTSRSVHIFDLRQSLDSVSSVN 194 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc----chhhcccccchhhhhhhhhhhhhhhhhh
Confidence 8873 35689999997652 1111 111112334555555444 5556665 4555555410 00000
Q ss_pred ecCCCccEEEEec--CCEEEeeecCCcEEeee-eeeCCCeEEEeecCCCccccccccccceeeccCC-C----ceEEEEE
Q 001165 399 EEGSSERVLIFSF--GKCCLNRGVSGMTYARQ-VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN-W----PVQHVAA 470 (1134)
Q Consensus 399 ~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~-l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~-~----~V~~va~ 470 (1134)
.+-|++ ..++| ...+++- .|+.+-+|| ...-+. |.....|+ . .+..+++
T Consensus 195 Tk~vqG--~tVdp~~~nY~cs~-~dg~iAiwD~~rnien--------------------pl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 195 TKYVQG--ITVDPFSPNYFCSN-SDGDIAIWDTYRNIEN--------------------PLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred hhhccc--ceecCCCCCceecc-ccCceeeccchhhhcc--------------------HHHHHhhCCCCcccceeeEEe
Confidence 011111 23333 4444443 488999999 333222 11111111 1 3788999
Q ss_pred cCCCC-EEEEEeC-CCeE-EEEcc
Q 001165 471 SKDGM-FLAVAGL-HGLI-LYDIR 491 (1134)
Q Consensus 471 SpdG~-~LAsgg~-dG~i-lwd~~ 491 (1134)
+|-.. .+|+-.+ .++| +|++.
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCCcchhhhhccCcceEEEeccc
Confidence 88432 4455555 4566 88874
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.083 Score=66.23 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=60.5
Q ss_pred EEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCc
Q 001165 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 340 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~ 340 (1134)
.++..-.+..+|.|++.|.|...|+..+-.. ..++ ..-.++|++++|+.||+.++.|-.+|.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~------~~~n------------e~v~~~Vtsvafn~dg~~l~~G~~~G~ 153 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGP------LHQN------------ERVQGPVTSVAFNQDGSLLLAGLGDGH 153 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccch------hhcC------------CccCCcceeeEecCCCceeccccCCCc
Confidence 3333345678999999999999988722110 0000 013689999999999999999999999
Q ss_pred EEEEecCCCeeEEEeccC
Q 001165 341 LTVWSVSGCRLMSTIRQI 358 (1134)
Q Consensus 341 I~vWdv~~~~l~~tl~~h 358 (1134)
|.+||+..+...+.+..|
T Consensus 154 V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 154 VTVWDMHRAKILKVITEH 171 (1206)
T ss_pred EEEEEccCCcceeeeeec
Confidence 999999998888887766
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.60 E-value=0.058 Score=38.58 Aligned_cols=34 Identities=41% Similarity=0.524 Sum_probs=30.0
Q ss_pred eeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 456 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 456 ~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
..+..|..+|.+++++++++++++++.||.+ +|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456788899999999999999999999999 885
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.27 E-value=1.3 Score=41.86 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred cCCC-CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 217 CLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 217 sp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
.-+| +-+++++.|..+++++-... ...+. -.+.+++++-... ..+|.|..+|+|-+|+-.
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~e~----~~Ei~-----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--------- 71 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGDEI----VAEIT-----ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--------- 71 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCCcE----EEEEe-----cccceEEEEEcCC-CEEEEEecCCEEEEEeCc---------
Confidence 3343 57899999999998754311 01111 1366777766665 569999999999999864
Q ss_pred eeeccCcceEEEEeecccCCCCcCeEEEEECC---CCC-EEEEEECCCcEEE
Q 001165 296 SLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP---DNS-AFAVGWKSRGLTV 343 (1134)
Q Consensus 296 ~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~-~Lasg~~Dg~I~v 343 (1134)
+.+...+ .+..++++.+.. ||. -|++||.+|.|-+
T Consensus 72 --------~RlWRiK-----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 --------QRLWRIK-----SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --------ceeeeec-----cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1122211 233366666544 444 7999999998743
No 351
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.26 E-value=1.5 Score=54.46 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=51.2
Q ss_pred cCCCCEEEEEeCCCe-----E-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 471 SKDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 471 SpdG~~LAsgg~dG~-----i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.-+|+..|+||.||. + .||..+..|.......... ..+....+.+..++++++........+.+|+.+
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-ccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 348899999998883 6 7999999999876544443 234456677778888888777777888899663
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.07 E-value=0.97 Score=53.30 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=73.2
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc-------c----------------------------cceecccccC
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-------L----------------------------AEFIKIDKEL 254 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~-------~----------------------------~~~~~~~~~~ 254 (1134)
.|+.|+|+++..-++++..+|.|.+|........ . .+++.+..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999876421100 0 0011110011
Q ss_pred --CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeec----ccCCCCcCeEEEEECC-
Q 001165 255 --GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCR----YSMDDTGPVSCIAWTP- 327 (1134)
Q Consensus 255 --~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~----~~~~h~g~V~~l~fSP- 327 (1134)
..+.+++++.| |=.++|+|.++|.+.|.|++. ...++.-.- ........|+++.|+.
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RG---------------PavI~~~~i~~~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRG---------------PAVIYNENIRESFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTT---------------TEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCC---------------CeEEeeccccccccccccccCeeEEEEEEE
Confidence 24678999987 445999999999999999983 333322110 0011344688999973
Q ss_pred ----CCC---EEEEEECCCcEEEEec
Q 001165 328 ----DNS---AFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 328 ----DG~---~Lasg~~Dg~I~vWdv 346 (1134)
|++ +|.+|...|.+.+|.+
T Consensus 147 ~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 147 TLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp E-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ecCCCcccceEEEEEeCCCCEEEEEE
Confidence 442 6777777777777765
No 353
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.00 E-value=0.12 Score=40.99 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=28.3
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..+.+++|||+..+||+|+.+|.|.+|.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 678899999999999999999999999985
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=18 Score=42.75 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=77.6
Q ss_pred CCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 257 ~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
....++++++.+. ..++...++.|.+.|.. +.+......- +. ....++++|+|+.+.++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~---------------~~~~~~~~~v---G~--~P~~~~~~~~~~~vYV~ 133 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA---------------TNTVLGSIPV---GL--GPVGLAVDPDGKYVYVA 133 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCc---------------ccceeeEeee---cc--CCceEEECCCCCEEEEE
Confidence 3445789999888 55555567899999966 2222222111 12 45679999999877776
Q ss_pred EC---CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcce-EEEc---ceeEEEeCCCceEEE
Q 001165 336 WK---SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP-LMSG---TSMMQWDEYGYRLYA 397 (1134)
Q Consensus 336 ~~---Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~-l~sg---s~i~~W~~~~~~l~~ 397 (1134)
.. ++++.+-|..+..+..+.... ..+ ..++++|++ +. .++- ..+.+.+.++..++.
T Consensus 134 n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p~g----~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 134 NAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDPDG----NKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred ecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECCCC----CeEEEEecCCCeEEEEeCCCcceec
Confidence 55 689999999988888875543 334 788999998 42 2221 277777877766663
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.41 E-value=14 Score=40.15 Aligned_cols=83 Identities=11% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEE-EEECCCCCEEEEEECCCcEEEEe
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~-l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
-|..++.|+.+|.+.+-+.+ +|+....+.. .+.|.+ -...+||..+-.|+.|++...-|
T Consensus 62 vgdfVV~GCy~g~lYfl~~~---------------tGs~~w~f~~-----~~~vk~~a~~d~~~glIycgshd~~~yalD 121 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVK---------------TGSQIWNFVI-----LETVKVRAQCDFDGGLIYCGSHDGNFYALD 121 (354)
T ss_pred ECCEEEEEEccCcEEEEEec---------------chhheeeeee-----hhhhccceEEcCCCceEEEecCCCcEEEec
Confidence 36679999999999998888 6665554432 223322 23468999999999999999999
Q ss_pred cCCCeeEEEeccCCCCceeeeEEcC
Q 001165 346 VSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 346 v~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
..+..++-..+-.| ....+.+..|
T Consensus 122 ~~~~~cVykskcgG-~~f~sP~i~~ 145 (354)
T KOG4649|consen 122 PKTYGCVYKSKCGG-GTFVSPVIAP 145 (354)
T ss_pred ccccceEEecccCC-ceeccceecC
Confidence 98877766654332 2233444444
No 356
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.29 E-value=32 Score=44.01 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=57.7
Q ss_pred CeEEEEECCC-CCEEEEEEC----------CCcEEEEecCCCeeEEEeccC-CCCceeeeEEcCCCCCCcceEEE-ccee
Q 001165 319 PVSCIAWTPD-NSAFAVGWK----------SRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMS-GTSM 385 (1134)
Q Consensus 319 ~V~~l~fSPD-G~~Lasg~~----------Dg~I~vWdv~~~~l~~tl~~h-~~~~V~sv~~sp~~~~~~~~l~s-gs~i 385 (1134)
.|.++.|.-| +.++++|-. .|.|-|+.+.....+.....+ -.+.|.++... +| ..+++ |..+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng----kllA~In~~v 850 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NG----KLLAGINQSV 850 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CC----eEEEecCcEE
Confidence 4667779888 778888732 245556555441111111111 01233333322 22 45554 3488
Q ss_pred EEEeCCCceEEEEecCCCccEEEEec---CCEEEeeecCCcEEee
Q 001165 386 MQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYAR 427 (1134)
Q Consensus 386 ~~W~~~~~~l~~~~~~h~~~v~~~s~---~k~l~S~s~d~ti~~w 427 (1134)
+++.....+.++....+..++.++.. +..++.|..=+++.+-
T Consensus 851 rLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 851 RLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred EEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 88888888777777777777755554 6666666554455443
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.23 E-value=8.2 Score=48.12 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=52.2
Q ss_pred CCeEEEEECCCCCEEEEee------eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC
Q 001165 257 GDAVCASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS 330 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~------~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~ 330 (1134)
..+...++||+|+.+|.-. .|+.-.||-.... ++. ..+. .....+.-+|||||+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--------------g~~-~~lt-----~g~~~t~PsWspDG~ 409 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--------------GVA-VQVL-----EGHSLTRPSWSLDAD 409 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--------------Ccc-eeee-----cCCCCCCceECCCCC
Confidence 3567889999999988755 2444444443311 111 1111 111267789999999
Q ss_pred EEEEEECC-CcEEEE-----------ecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 331 AFAVGWKS-RGLTVW-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 331 ~Lasg~~D-g~I~vW-----------dv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
.|++..+. ..+++. ++.++.... .. ...|.++.+||||
T Consensus 410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG 459 (591)
T PRK13616 410 AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDG 459 (591)
T ss_pred ceEEEecCcceEEEeccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCC
Confidence 88877543 122222 333333222 11 3469999999999
No 358
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.18 E-value=0.13 Score=62.57 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=77.8
Q ss_pred EEEEECCCCCEEEEeee----CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 260 VCASIAPEQQILAVGTR----RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~----dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
+-.+|+|...++|+++- .|.|-||-- +|++-+.. ...-.+++++|.|..-.||+|
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad----------------tGEPqr~V-----t~P~hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD----------------TGEPQRDV-----TYPVHATSLCWHPEEFVLAQG 77 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec----------------CCCCCccc-----ccceehhhhccChHHHHHhhc
Confidence 34679999999988863 577887753 23321110 011235779999999999999
Q ss_pred ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 336 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
|+-|.+.+|...+.. .++....|..++..+.|||+| ..++++- .+..|...
T Consensus 78 we~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cccceeEEEecCCce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence 999999999987644 566655448899999999999 8888876 77788654
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.16 E-value=5.4 Score=49.71 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=65.0
Q ss_pred ccEEEEEEcCCCCeEEEEE------cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC-CeEE
Q 001165 209 SAIIWLELCLPMRLLFVLY------SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-GVVE 281 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~------sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-g~V~ 281 (1134)
..+.+.+.||+|+.++... .|++-.+|-....... ..+. .....++-+|+|+|+.|++.... ..++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt-----~g~~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL-----EGHSLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee-----cCCCCCCceECCCCCceEEEecCcceEE
Confidence 4677889999999988877 3555555554321111 1111 11235677899999988887543 2233
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEE
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 343 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~v 343 (1134)
+.+-... .....+.+ + .++... ...+.|..++|||||.++|.... |.|.|
T Consensus 423 v~~~~~~-gql~~~~v-d--~ge~~~-------~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 423 VIRDPAT-GQLARTPV-D--ASAVAS-------RVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred EeccCCC-ceEEEEec-c--Cchhhh-------ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 3332211 11111111 0 122110 13567999999999999987663 55554
No 360
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.09 E-value=27 Score=42.67 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=37.2
Q ss_pred CCCCEEEEEeCCCeEEEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEe
Q 001165 472 KDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS 551 (1134)
Q Consensus 472 pdG~~LAsgg~dG~ilwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~ 551 (1134)
++|+..|.--.+|.++|....+..+. ............+.-.++.+.++ +.+..|..++. ++...+|+.+
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~--~~~~g~~~~~~~~~~~g~~v~~g-----~~dG~l~ald~---~tG~~lW~~~ 433 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRD--SWNIGFPHWGGSLATAGNLVFAG-----AADGYFRAFDA---TTGKELWKFR 433 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCcccc--ccccCCcccCcceEecCCeEEEE-----CCCCeEEEEEC---CCCceeeEEE
Confidence 35666666666777777665441110 00000000011233345566655 23456777766 4567889888
Q ss_pred cCCc
Q 001165 552 LLAK 555 (1134)
Q Consensus 552 l~~~ 555 (1134)
++++
T Consensus 434 ~~~~ 437 (488)
T cd00216 434 TPSG 437 (488)
T ss_pred CCCC
Confidence 8653
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.07 E-value=17 Score=40.33 Aligned_cols=171 Identities=14% Similarity=0.206 Sum_probs=101.0
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
+..+....+.+++|+|+.+.+.++++.+...+ .++..+. -...+. ..+..+.-.+++--+++++++-=.++++.+
T Consensus 80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iV-Elt~~Gd-lirtiP---L~g~~DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIV-ELTKEGD-LIRTIP---LTGFSDPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred ccccccccccceeeCCCcceEEEecCCCceEE-EEecCCc-eEEEec---ccccCChhHeEEecCCEEEEEehhcceEEE
Confidence 34455666999999999999888877665433 3332211 011111 123456667888888888888778899999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCC-CcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDD-TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h-~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
+.++..+.....-.. ..++.. ..+ ...-..++|+|.++.|..+=+..-+.|+.+.+.. ..+..|
T Consensus 155 ~~vd~~t~~~~~~~~--------~i~L~~--~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~--~~l~~~--- 219 (316)
T COG3204 155 FTVDADTTVISAKVQ--------KIPLGT--TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP--SSLSVH--- 219 (316)
T ss_pred EEEcCCccEEeccce--------EEeccc--cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC--cccccc---
Confidence 999866543321110 001110 112 4557789999999999999888888888876432 111111
Q ss_pred ceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEe
Q 001165 362 SISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~ 399 (1134)
+...|.. ..+.++...+...++..++.++...
T Consensus 220 ----~~~~~~~--~~~~f~~DvSgl~~~~~~~~LLVLS 251 (316)
T COG3204 220 ----ASLDPTA--DRDLFVLDVSGLEFNAITNSLLVLS 251 (316)
T ss_pred ----cccCccc--ccceEeeccccceecCCCCcEEEEe
Confidence 0001111 1133444445666777777776654
No 362
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.89 E-value=0.26 Score=39.19 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=29.7
Q ss_pred CcCeEEEEECCCCCEEEEEECCCcEEEEecCCC
Q 001165 317 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 317 ~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
...|.+++|||....||.|..||.|.|+.+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 457999999999999999999999999998554
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.28 E-value=7 Score=37.12 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=44.5
Q ss_pred ECCCC-CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEE
Q 001165 264 IAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 342 (1134)
Q Consensus 264 ~spdg-~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~ 342 (1134)
|.-+| .-|.+||.|..||+|+-+ +.+.++. -++.|+++.-... ..++-|-.+|+|.
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~-----------------e~~~Ei~-----e~~~v~~L~~~~~-~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD-----------------EIVAEIT-----ETDKVTSLCSLGG-GRFAYALANGTVG 66 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC-----------------cEEEEEe-----cccceEEEEEcCC-CEEEEEecCCEEE
Confidence 44444 368899999999999854 3444433 3567888877766 5688888999999
Q ss_pred EEecC
Q 001165 343 VWSVS 347 (1134)
Q Consensus 343 vWdv~ 347 (1134)
|++-.
T Consensus 67 vY~~~ 71 (111)
T PF14783_consen 67 VYDRS 71 (111)
T ss_pred EEeCc
Confidence 98763
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=38 Score=39.96 Aligned_cols=208 Identities=12% Similarity=0.023 Sum_probs=116.9
Q ss_pred eEEEEcCCceEEEEEeC-CCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEe
Q 001165 71 LQAVWSPDTKLIAVVTS-SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (1134)
Q Consensus 71 ~~v~wSPDg~~Lav~t~-dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t 149 (1134)
..++.+|++..+.+.+. ++.+.+.|...... .. + ..-+. ...-..+.++++.++++.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~-~~------------~---~~vG~------~P~~~~~~~~~~~vYV~n 134 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV-LG------------S---IPVGL------GPVGLAVDPDGKYVYVAN 134 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccce-ee------------E---eeecc------CCceEEECCCCCEEEEEe
Confidence 46888999997666654 47898888543210 00 0 00010 111245667788888877
Q ss_pred cC---CcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE
Q 001165 150 SD---GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1134)
Q Consensus 150 ~d---g~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~ 226 (1134)
.. +++..+ |..+..... .+ ..+. .+ ..++++|+++.+.+.
T Consensus 135 ~~~~~~~vsvi--d~~t~~~~~------------~~---------------------~vG~-~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 135 AGNGNNTVSVI--DAATNKVTA------------TI---------------------PVGN-TP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred cccCCceEEEE--eCCCCeEEE------------EE---------------------ecCC-Cc-ceEEECCCCCeEEEE
Confidence 63 455443 333222110 00 1111 22 678999999966666
Q ss_pred E-cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC---CeEEEEeccccccceeeeeeeccCc
Q 001165 227 Y-SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGM 302 (1134)
Q Consensus 227 ~-sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d---g~V~lwd~~~~~~~~~~l~l~~~~~ 302 (1134)
. .++++.+.+.+............ ..-.....-++++|+|..+-+.... +.+...|.. +
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~--~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~---------------~ 240 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSL--VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA---------------T 240 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccc--cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC---------------C
Confidence 5 67888888754432221000000 0011234568999999965544333 578777776 3
Q ss_pred ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CCcEEEEecCCCeeEEEecc
Q 001165 303 REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
+.....- ...+.. ....+..+|+|+.+.+... .+++.+-|..+..+..+...
T Consensus 241 ~~v~~~~--~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 241 GNVTATD--LPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ceEEEec--cccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 3332220 000111 4556899999999988844 48899999888777766543
No 365
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=90.91 E-value=4.3 Score=50.77 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=93.7
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
|.-+..++..+.+|...|+|.+. |....... ..+..|.+.|.+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~Lr--D~~s~~~i----------------------------------ht~~aHs~siSD- 222 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLR--DPNSFETI----------------------------------HTFDAHSGSISD- 222 (1118)
T ss_pred eEEEEecCcEEEeecccceEEee--cCCcCcee----------------------------------eeeeccccceee-
Confidence 44455567788888889988753 32221111 123456666654
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCC----ccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccc
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKG----LKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~ 289 (1134)
|+-.||.+++++-.++.+....+.+- ....+.+.+.. ...+..-+.|.|... .+|+++..|...+-|....+
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~--~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ--FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc--cccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 57889999988777765444333321 11111222111 112334577888754 58888999999988843211
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
.+. .+ ...+.. -...+..+.+|+.|+.+|.|..+|.|.+|.-
T Consensus 300 NP~---------~~--~~~v~p----~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPP---------AG--VKMVNP----NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCc---------cc--eeEEcc----CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 110 00 000000 2234899999999999999999999999983
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.83 E-value=1.7 Score=55.03 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=66.4
Q ss_pred CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeecc
Q 001165 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~ 300 (1134)
....+|.++..+..|+..-.+.+..... ...+.....-+|+|-+.+| .||+|+.+|.||+||--
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~-~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-------------- 606 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQ-SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-------------- 606 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeecc-ccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc--------------
Confidence 3456677788888888764332111100 0011223567889888887 68999999999999832
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
|..-+| ..++-..||..|..|.||+++++.+. ..+-|.++
T Consensus 607 --g~~AKT---~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 607 --GKRAKT---ALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred --chhhhh---cCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 111111 12235679999999999998877665 46666665
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.82 E-value=30 Score=38.37 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=70.4
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccce--ec------ccccCCCCCeEEEE--ECCC-CCEEEEeeeCC
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF--IK------IDKELGSGDAVCAS--IAPE-QQILAVGTRRG 278 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~--~~------~~~~~~~~~~~~va--~spd-g~llAsG~~dg 278 (1134)
.|..+...|+.+.+++.+ ||.++++++.......... .. ........++...+ -.+. ...++++. ..
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk 114 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KK 114 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CC
Confidence 389999999998877774 6999998876543322110 00 00011123344444 1223 33455544 45
Q ss_pred eEEEEeccccccceeeeeeeccCcc-eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee
Q 001165 279 VVELYDLAESASLIRTVSLYDWGMR-EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 351 (1134)
Q Consensus 279 ~V~lwd~~~~~~~~~~l~l~~~~~~-~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l 351 (1134)
+|.+|........ . +..+.+. -...+.+++|. ++.++.|.. ++..+-|+.++..
T Consensus 115 ~i~i~~~~~~~~~-----------f~~~~ke~~-----lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~ 169 (275)
T PF00780_consen 115 KILIYEWNDPRNS-----------FSKLLKEIS-----LPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSP 169 (275)
T ss_pred EEEEEEEECCccc-----------ccceeEEEE-----cCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCc
Confidence 9999998743111 1 2222322 24778999999 667888876 4688889886554
No 368
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.72 E-value=6.7 Score=45.33 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=55.5
Q ss_pred EEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC----CCEEEEeeeC------C--
Q 001165 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE----QQILAVGTRR------G-- 278 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd----g~llAsG~~d------g-- 278 (1134)
-++|+|.|++++++ +...|+|++++.++.............-.+......++++|+ +.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 46899999987765 456999999873221101111111000112356779999996 4444443321 1
Q ss_pred eEEEEeccccccceeeeeeeccCcceEEE-Eeec-ccCCCCcCeEEEEECCCCCEEEEEECCCc
Q 001165 279 VVELYDLAESASLIRTVSLYDWGMREVYY-TFCR-YSMDDTGPVSCIAWTPDNSAFAVGWKSRG 340 (1134)
Q Consensus 279 ~V~lwd~~~~~~~~~~l~l~~~~~~~~l~-~l~~-~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~ 340 (1134)
.|.-|..++...... +.+.+. .+.. ....|. -..|+|.|||.+.++.++.+.
T Consensus 83 ~v~r~~~~~~~~~~~--------~~~~l~~~~p~~~~~~H~--g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLS--------SEEVLVTGLPDTSSGNHN--GGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEETTSCEEE--------EEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEEB-TTT
T ss_pred eeEEEeccCCccccc--------cceEEEEEeCCCCCCCCC--CccccCCCCCcEEEEeCCCCC
Confidence 233333332210000 111111 1110 011244 356999999987777766544
No 369
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.44 E-value=21 Score=39.35 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=60.9
Q ss_pred eeEEEeecCeEEEEEcC--CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecC
Q 001165 23 QIIYFKVNNGLLLIASP--CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~--~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
.-++++||++.|+++++ ..|...+.+ +. .+.... +..+|..-.|++.-+|+++++.-.++.+.++++....
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 44899998654444443 356555553 33 232221 3346778899999888777766568889999986533
Q ss_pred cceecCCCCCCCcceeeEEEeec--eeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCC
Q 001165 101 KSIQIGGKQPSGLFFIKISLVLN--EQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161 (1134)
Q Consensus 101 ~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~ 161 (1134)
+.+... ....+.+... +...+. -.|+.+.++.++++-...-..++.+++
T Consensus 98 ~~~~~~-------~~~~~~l~~~~~~N~G~E-----Gla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 98 TSLDRA-------DVQKISLGFPNKGNKGFE-----GLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp TT--EE-------EEEEEE---S---SS--E-----EEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred cccchh-------hceEEecccccCCCcceE-----EEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 221100 0111111111 111111 135556677888887666555666655
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.43 E-value=33 Score=38.11 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEe
Q 001165 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 266 pdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
..++.|++|+.+| +.+|++++... ..... +..+|..+..-|+-+.|++-++ +.+.+++
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------~~~i~------~~~~I~ql~vl~~~~~llvLsd-~~l~~~~ 62 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------PTRIL------KLSSITQLSVLPELNLLLVLSD-GQLYVYD 62 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------ceeEe------ecceEEEEEEecccCEEEEEcC-CccEEEE
Confidence 3577899999998 88998842111 11111 3345999999998887777654 9999999
Q ss_pred cCC
Q 001165 346 VSG 348 (1134)
Q Consensus 346 v~~ 348 (1134)
+..
T Consensus 63 L~~ 65 (275)
T PF00780_consen 63 LDS 65 (275)
T ss_pred chh
Confidence 865
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.39 E-value=45 Score=39.62 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=38.3
Q ss_pred EEEECCCCCEEEEee-eCC----eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 261 CASIAPEQQILAVGT-RRG----VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 261 ~va~spdg~llAsG~-~dg----~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
..++||+|+++|.+- ..| +++++|++ +|+.+...-. ... -..+.|++||+.|.-.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~---------------tg~~l~d~i~----~~~-~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE---------------TGKFLPDGIE----NPK-FSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETT---------------TTEEEEEEEE----EEE-SEEEEECTTSSEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECC---------------CCcCcCCccc----ccc-cceEEEeCCCCEEEEE
Confidence 568999999999774 334 59999998 5655432110 111 1239999999977665
Q ss_pred ECC
Q 001165 336 WKS 338 (1134)
Q Consensus 336 ~~D 338 (1134)
..+
T Consensus 188 ~~~ 190 (414)
T PF02897_consen 188 RFD 190 (414)
T ss_dssp ECS
T ss_pred EeC
Confidence 543
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.00 E-value=21 Score=39.37 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCEEEEeeeCC-eEEEEecc
Q 001165 257 GDAVCASIAPEQQILAVGTRRG-VVELYDLA 286 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg-~V~lwd~~ 286 (1134)
+-+-+|+.|-+..+++..+-.| ..-+||.+
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 3466889998888888777655 46689988
No 373
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=89.99 E-value=0.088 Score=62.55 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=93.0
Q ss_pred ccEEEEEEcC--CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEee----eCCeEE
Q 001165 209 SAIIWLELCL--PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGT----RRGVVE 281 (1134)
Q Consensus 209 ~~V~~i~fsp--~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~----~dg~V~ 281 (1134)
..+.+++.+- +...+++|.++|.|.+........... ...+ .....++|.||++ |...||.|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~-E~tp---~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA-EVTP---GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccc-eecc---cccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 3445554443 345788999999999877643211100 1111 1235788999999 566788774 366799
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee-EEEeccCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISL 360 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l-~~tl~~h~~ 360 (1134)
|||+...-... .... . +..+....+.+++|-.|-+.+.+|...+.+.++|+.-... ...+. +
T Consensus 133 Iwdi~s~ltvP---------ke~~--~---fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---T 195 (783)
T KOG1008|consen 133 IWDINSLLTVP---------KESP--L---FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---T 195 (783)
T ss_pred ceecccccCCC---------cccc--c---cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---h
Confidence 99998321100 0000 0 1111233466899999999999999989999999863221 11111 2
Q ss_pred CceeeeEEcC-CCCCCcceEEEcc--eeEEEe
Q 001165 361 SSISSPIVKP-NQDCKYEPLMSGT--SMMQWD 389 (1134)
Q Consensus 361 ~~V~sv~~sp-~~~~~~~~l~sgs--~i~~W~ 389 (1134)
..|..+.++| .+ .++++.. .+.+||
T Consensus 196 k~vqG~tVdp~~~----nY~cs~~dg~iAiwD 223 (783)
T KOG1008|consen 196 KYVQGITVDPFSP----NYFCSNSDGDIAIWD 223 (783)
T ss_pred hhcccceecCCCC----CceeccccCceeecc
Confidence 2455666666 33 5666544 778899
No 374
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=89.69 E-value=1.1 Score=47.70 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEE-EEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
...+++++++|.+++|..+..+... .... ...+.+.| +..-.++.+..+|+.||.||.|++..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~-d~~~----s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p----------- 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS-DRVC----SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP----------- 133 (238)
T ss_pred CceEEeecccceEEEecCCccchHH-Hhhh----cccccceeccccccccceeEEeccCCceeeecccc-----------
Confidence 4568899999999998876433211 0000 01122333 23334556888999999999999982
Q ss_pred ccCcceEEEEeecccCCCC-cCeEEEEECCCCCEEEEE--ECCCcEEEEecC
Q 001165 299 DWGMREVYYTFCRYSMDDT-GPVSCIAWTPDNSAFAVG--WKSRGLTVWSVS 347 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~-g~V~~l~fSPDG~~Lasg--~~Dg~I~vWdv~ 347 (1134)
++.+- +...|+ .++.....+..+..++.+ |.|..++.|++.
T Consensus 134 ----~k~~g----~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 134 ----NKVLG----YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ----Cceee----eeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 22221 111265 445555555556666666 666666666664
No 375
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.49 E-value=6.3 Score=50.09 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=49.7
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCc----------cee-EEEeecChhhH---HhhcceeEEEEcCC---ceEEEEEeC
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQH----------KVR-LGKYKRDSESV---QREGENLQAVWSPD---TKLIAVVTS 87 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~----------~~~-l~~~~r~~~sl---~~~G~~~~v~wSPD---g~~Lav~t~ 87 (1134)
|.+||+|+++|.+|...|.|-..-+. ... .|...-....+ .....+.+|.|-|. +..|++-|+
T Consensus 90 i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLts 169 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTS 169 (717)
T ss_pred EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEec
Confidence 67899999999999887766555210 011 11111111111 01235789999887 489999999
Q ss_pred CCEEEEEEEEecC
Q 001165 88 SLYLHIFKVQITE 100 (1134)
Q Consensus 88 dg~l~lw~l~~~~ 100 (1134)
|+++|+||+....
T Consensus 170 dn~lR~y~~~~~~ 182 (717)
T PF10168_consen 170 DNTLRLYDISDPQ 182 (717)
T ss_pred CCEEEEEecCCCC
Confidence 9999999996543
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.49 E-value=44 Score=38.21 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=85.9
Q ss_pred ceEEEEEeC---------C-CEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEE
Q 001165 79 TKLIAVVTS---------S-LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (1134)
Q Consensus 79 g~~Lav~t~---------d-g~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~ 148 (1134)
-.+|++||+ . |.|.+|++..... ....+...... .+ .+.|.++.+-++.++++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------------~~~~l~~i~~~--~~---~g~V~ai~~~~~~lv~~ 104 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------------NNFKLKLIHST--EV---KGPVTAICSFNGRLVVA 104 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----------------EEEEEEEE--EE---SS-EEEEEEETTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccc------------cceEEEEEEEE--ee---cCcceEhhhhCCEEEEe
Confidence 468888885 2 8899999975300 00011111111 11 34688888877776555
Q ss_pred ecCCcEEEEecCCcc-ccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE
Q 001165 149 LSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (1134)
Q Consensus 149 t~dg~v~~~~wd~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~ 227 (1134)
. ++.+.++.|+... ..... .......+.++... ++.++++.
T Consensus 105 ~-g~~l~v~~l~~~~~l~~~~-----------------------------------~~~~~~~i~sl~~~--~~~I~vgD 146 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSKTLLKKA-----------------------------------FYDSPFYITSLSVF--KNYILVGD 146 (321)
T ss_dssp E-TTEEEEEEEETTSSEEEEE-----------------------------------EE-BSSSEEEEEEE--TTEEEEEE
T ss_pred e-cCEEEEEEccCcccchhhh-----------------------------------eecceEEEEEEecc--ccEEEEEE
Confidence 4 6788888887654 11110 11112245555433 66888888
Q ss_pred cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 228 sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
....+.++..+.... ....+.. -.....++++.|-++++.++++..+|.+.++..+.
T Consensus 147 ~~~sv~~~~~~~~~~-~l~~va~--d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 147 AMKSVSLLRYDEENN-KLILVAR--DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSSEEEEEEETTTE--EEEEEE--ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccCEEEEEEEccCC-EEEEEEe--cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 888888887654211 1111110 01124577888876667899999999999999873
No 377
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.75 E-value=15 Score=40.70 Aligned_cols=116 Identities=14% Similarity=0.079 Sum_probs=63.0
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCC-CeEEEEECCCCCEEEEee---eCCeEEEEec
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG-DAVCASIAPEQQILAVGT---RRGVVELYDL 285 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~va~spdg~llAsG~---~dg~V~lwd~ 285 (1134)
.+..-+|++++...++...++...++.............. |.... .|+.+++||||..+|.-. .++.|.+--+
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~---~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD---WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec---ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 4455577888776666655555555431111110111111 12222 899999999999888655 3567777665
Q ss_pred cccccc-eeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC
Q 001165 286 AESASL-IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 286 ~~~~~~-~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
...... .+.+. ..... .......|++++|.+++.+++.+...+
T Consensus 144 ~r~~~g~~~~l~-------~~~~~----~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 144 VRDGDGVPRRLT-------GPRRV----APPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EeCCCCCcceec-------cceEe----cccccCcceeeeecCCCEEEEEeCCCC
Confidence 422211 11110 01111 111346799999999998777765543
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.66 E-value=25 Score=38.88 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=56.9
Q ss_pred CeEEEEECCCCCEEEEee-eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~-~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
.+...++|++++.+|.-. .++.-.||-...... ....+ ....++.-+|+++|...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--------------~~~~~------~g~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--------------VRPVL------TGGSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--------------ceeec------cCCccccccccCCCCEEEEEc
Confidence 678899999999887655 233334444331111 10000 113677789999999988888
Q ss_pred CCCcEEEEe-c-CCCeeEEEeccCCCC-ceeeeEEcCCC
Q 001165 337 KSRGLTVWS-V-SGCRLMSTIRQISLS-SISSPIVKPNQ 372 (1134)
Q Consensus 337 ~Dg~I~vWd-v-~~~~l~~tl~~h~~~-~V~sv~~sp~~ 372 (1134)
.+...+++. . .+......+...... .|.++++|||+
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCC
Confidence 777888884 2 222222222222122 78899999998
No 379
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.62 E-value=53 Score=37.94 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=35.6
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcce--eEEEeecChhhHHhhcceeEEEEcCC----ceEEEEEe
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPD----TKLIAVVT 86 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wSPD----g~~Lav~t 86 (1134)
++|.|||++|++-..+.|++.+.+ +.. .+...... .....+....+++.|+ +...++.+
T Consensus 7 ~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v--~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 7 MAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLPEV--FADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-TTT--BTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred EEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccccc--cccccCCcccceeccccCCCCEEEEEEE
Confidence 789999999998778899999844 332 22222111 1123456788999995 54444444
No 380
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=6.7 Score=50.36 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=66.5
Q ss_pred CcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 207 ISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
..+...++.|+|.- ...++...|+.+.+..+..... ..... .-...++|++|+|+|+.+++|-.+|++.-|..
T Consensus 154 k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~-~v~s~-----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 154 KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ-NVTSF-----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred cccccccccccCCccchhhhhccccchhhhhhhhhhh-hhccc-----CcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 34555677888875 3566777888887755432111 11111 12367899999999999999999999998876
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
. .+....+.+......+.|.||+|-..-.++++
T Consensus 228 ~----------------leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 228 S----------------LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred c----------------cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 5 12112221111123578999999765555544
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=3.6 Score=48.57 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=68.2
Q ss_pred EEEEEEcCCCC-------eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 211 IIWLELCLPMR-------LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 211 V~~i~fsp~~~-------~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
|.-+.|.|+.. .-.++.+|.++.-|+....+.....-.....+.....-.|.+-..+| .||+|+.+|.||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEee
Confidence 44556666643 34567788888888775333211100000011122445577766666 79999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
|-- +..-++ ..|+-..+|+.|..+.||+.|...+. ..+-+-++
T Consensus 457 dri----------------~~~AKT---AlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 457 DRI----------------GRRAKT---ALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred hhh----------------hhhhhh---cccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 963 111111 22335678999999999998876665 35544443
No 382
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.45 E-value=12 Score=47.74 Aligned_cols=129 Identities=20% Similarity=0.171 Sum_probs=77.6
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc--eecccccC----CCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE--FIKIDKEL----GSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~--~~~~~~~~----~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
....+.+..++.+++|-.++.++...++......... ........ -..+|..+.+||+|+++|..+..|.+.+.
T Consensus 32 ~~rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~ 111 (717)
T PF10168_consen 32 HTRNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLE 111 (717)
T ss_pred cceeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 3466777778888888887777655555332211100 00100000 12578899999999999998887765543
Q ss_pred eccccc--c---------ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC---CCEEEEEECCCcEEEEecCC
Q 001165 284 DLAESA--S---------LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD---NSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 284 d~~~~~--~---------~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD---G~~Lasg~~Dg~I~vWdv~~ 348 (1134)
=....+ + .-+++.+- +.. +...+...|..+.|.|. +..|++-..|+++|+||+..
T Consensus 112 LP~r~g~~~~~~~g~~~i~Crt~~v~-----~~~-----~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 112 LPRRWGKNGEFEDGKKEINCRTVPVD-----ERF-----FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eccccCccccccCCCcceeEEEEEec-----hhh-----ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 322111 0 00122111 000 11234568999999996 57999999999999999964
No 383
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.18 E-value=22 Score=41.69 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=56.8
Q ss_pred ccEEEEEEcCCCCeEEEEE-----------cCC-eEEEEEeccCCcc-ccceecccccCCCCCeEEEEECCCCCEEEEee
Q 001165 209 SAIIWLELCLPMRLLFVLY-----------SNG-QLMSCSVSKKGLK-LAEFIKIDKELGSGDAVCASIAPEQQILAVGT 275 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~-----------sDG-~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~va~spdg~llAsG~ 275 (1134)
.....|+|+++|+++++-. ..| +|.++.-...+-. ....... .+......+++.++| ++++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---~~l~~p~Gi~~~~~G-lyV~-~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---EELSMVTGLAVAVGG-VYVA-T 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---cCCCCccceeEecCC-EEEe-C
Confidence 3456789999999877653 223 7766653222111 0001111 123456788999999 5554 4
Q ss_pred eCCeEEEEeccccccc--eeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 276 RRGVVELYDLAESASL--IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 276 ~dg~V~lwd~~~~~~~--~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
.+...++.+.+..... .++.-+..++ .....+......++|.|||...++-+.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~---------~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFG---------GQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccC---------CCCCcccccccCceECCCCCEEEeccc
Confidence 4433334454422111 1111111111 000012345788999999996665553
No 384
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.03 E-value=31 Score=42.93 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=27.3
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEec
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVS 238 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~ 238 (1134)
.+.+..|+.||..+.++--+.+|.+.+.+.+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D 246 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSID 246 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence 4778889999999999999999999887765
No 385
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=20 Score=44.51 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=35.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEE
Q 001165 462 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 522 (1134)
Q Consensus 462 ~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~ 522 (1134)
+..+..+++||++++||-=...|.+ +=++...+. +-+...+....-..|+|.++--|++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~--lce~~~~~~~~p~qm~WcgndaVvl 275 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI--LCEFNCTDHDPPKQMAWCGNDAVVL 275 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhh--hhccCCCCCCchHhceeecCCceEE
Confidence 3457789999999999988888887 555543321 1111100001112689988775555
No 386
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.33 E-value=51 Score=37.70 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=84.5
Q ss_pred CeEEEEECCC----CCEEEEEEC----------CCcEEEEecCCC-----eeEEEeccCCCCceeeeEEcCCCCCCcceE
Q 001165 319 PVSCIAWTPD----NSAFAVGWK----------SRGLTVWSVSGC-----RLMSTIRQISLSSISSPIVKPNQDCKYEPL 379 (1134)
Q Consensus 319 ~V~~l~fSPD----G~~Lasg~~----------Dg~I~vWdv~~~-----~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l 379 (1134)
.+..+.+..+ -.+|++|.. .|.|.++++... ++.........++|++++-. ++ ..+
T Consensus 28 s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~----~lv 102 (321)
T PF03178_consen 28 SLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG----RLV 102 (321)
T ss_dssp EEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT----EEE
T ss_pred EEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC----EEE
Confidence 3445555544 357777743 278999999773 22211111114578888765 33 444
Q ss_pred EE-cceeEEEeCCCce-EEEEecC-CCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc
Q 001165 380 MS-GTSMMQWDEYGYR-LYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 455 (1134)
Q Consensus 380 ~s-gs~i~~W~~~~~~-l~~~~~~-h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~ 455 (1134)
++ |.++.+|+....+ +.....- ....+..+.. +..++.|..-..+.+........++.....
T Consensus 103 ~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-------------- 168 (321)
T PF03178_consen 103 VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR-------------- 168 (321)
T ss_dssp EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE--------------
T ss_pred EeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe--------------
Confidence 43 3488888887777 5544322 1224455554 667777776667766544332222221111
Q ss_pred eeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 456 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 456 ~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
....-.+.++.|-+|++.++++..+|.+ ++...
T Consensus 169 ---d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 169 ---DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ---cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 1112347788887677899999999999 77764
No 387
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.77 E-value=3.1 Score=43.14 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=48.2
Q ss_pred CceeEEEeecCeEEEEEcCCeEEEeecCCcc-------------------eeEEEeecChh-----------hH--H--h
Q 001165 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHK-------------------VRLGKYKRDSE-----------SV--Q--R 66 (1134)
Q Consensus 21 ~~~iv~fS~dg~llAs~s~~~l~IW~~~~~~-------------------~~l~~~~r~~~-----------sl--~--~ 66 (1134)
....++.|.|| .||+++++.|.|-+...|. .++........ .. . .
T Consensus 6 ~~~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s 84 (173)
T PF12657_consen 6 CPNALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEIS 84 (173)
T ss_pred CCcCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccc
Confidence 34678899999 5667777788888433232 01111111100 00 0 0
Q ss_pred hcceeEEEEcCCce------EEEEEeCCCEEEEEEEEe
Q 001165 67 EGENLQAVWSPDTK------LIAVVTSSLYLHIFKVQI 98 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~------~Lav~t~dg~l~lw~l~~ 98 (1134)
.+.+..++|||-|- .||+.|++|.|.||....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 12678999999553 799999999999998754
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.35 E-value=73 Score=35.38 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeE--EEEccCCcEEEeCCccceeee-EEEEEEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 462 NWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKI-QSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 462 ~~~V~~va~SpdG~~LAsgg~dG~i--lwd~~sg~Wk~F~~~~~e~~~-~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
+.-|-+++.+.+...++..+..|.. +||..+|....- -.. .+.|+.-.++..++. +....+++|++
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~------a~l~daaGva~~~~gf~vs-----sg~G~~~~~s~ 347 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE------AALPDAAGVAAAKGGFAVS-----SGQGRIIFYSR 347 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec------ccccccccceeccCceEEe-----cCCceEEeccc
Confidence 3457789998877888888888876 999999964431 112 244555554444443 56678899977
Q ss_pred C
Q 001165 539 Y 539 (1134)
Q Consensus 539 ~ 539 (1134)
.
T Consensus 348 ~ 348 (366)
T COG3490 348 A 348 (366)
T ss_pred c
Confidence 4
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.25 E-value=99 Score=36.81 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=38.1
Q ss_pred CCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 316 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
....+.+|+.+|+|++.|+...=|.|.|+|+..+..+...+|...+
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 4456899999999998888766699999999999888888886443
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.73 E-value=1e+02 Score=36.57 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=25.7
Q ss_pred CeEEEEECCCCCEEEEE-ECCC----cEEEEecCCCeeE
Q 001165 319 PVSCIAWTPDNSAFAVG-WKSR----GLTVWSVSGCRLM 352 (1134)
Q Consensus 319 ~V~~l~fSPDG~~Lasg-~~Dg----~I~vWdv~~~~l~ 352 (1134)
.+...++||||+++|-+ +..| .+++.|+.+++.+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l 163 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL 163 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc
Confidence 34568899999998866 3334 5999999888654
No 391
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.50 E-value=1e+02 Score=36.36 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=63.3
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccccee
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~ 293 (1134)
+-|+-..+.+..+.+ |.+.=|.+.+.++....... -.+.+.+.++.||+|.+.||+-..+.+|.+++...+....
T Consensus 28 vFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfd---m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l- 102 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFD---MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL- 102 (657)
T ss_pred eeeccCcceEEEEec-CCeeEEEEeCCCCCCCceee---ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-
Confidence 445544555555444 44555555554432222221 1234688999999999999999999999999985221100
Q ss_pred eeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 294 TVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 294 ~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
+...+-+ ..+..|....|+.. +-+|--. +.++-++.+.
T Consensus 103 ----------~~~~~ck----~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~ 140 (657)
T KOG2377|consen 103 ----------EYTQECK----TKNANILGFCWTSS-TEIAFIT-DQGIEFYQVL 140 (657)
T ss_pred ----------HHHHHhc----cCcceeEEEEEecC-eeEEEEe-cCCeEEEEEc
Confidence 0000000 02334777888765 4444443 3467777653
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=83.32 E-value=1.1e+02 Score=37.55 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=39.0
Q ss_pred EEEECCCCCEEEEeeeC-CeEEEEeccccc-cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 261 CASIAPEQQILAVGTRR-GVVELYDLAESA-SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 261 ~va~spdg~llAsG~~d-g~V~lwd~~~~~-~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
-+||+|+.+.+|+|+.. ..|.||.+.... ...+.+.+. ....-..|+|-.|+-.|+-.|.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe-----------------~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLE-----------------SNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcc-----------------cCCCCceeeEccCCeEEEEecc
Confidence 47999999999999875 578999987432 222333321 2233355778777776665543
No 393
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.70 E-value=6.4 Score=45.03 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEe
Q 001165 314 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 389 (1134)
Q Consensus 314 ~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~ 389 (1134)
+.|...|..++|||..+ .+..++.+.+|+|.|+.+...+.+...+ +.+++++|.-+.. ..+-.|- .+.++|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~---h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDER---HVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCc---ceeEEeccCceEEEEE
Confidence 44778899999999988 6888999999999999998888777664 5788888877751 2233332 666777
Q ss_pred CCC
Q 001165 390 EYG 392 (1134)
Q Consensus 390 ~~~ 392 (1134)
.+.
T Consensus 265 ~R~ 267 (463)
T KOG1645|consen 265 MRQ 267 (463)
T ss_pred ccC
Confidence 654
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=82.67 E-value=4.2 Score=43.34 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
+.-+++|+.+|.|.+|+......+...+. + .-....+.|.-..++.+..+++.||.|+.|++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-----s------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC-----S------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh-----c------------ccccceeccccccccceeEEeccCCceeeeccc
Confidence 45689999999999999873222111110 0 011112223333467788899999999999998
Q ss_pred CCeeEEEeccC
Q 001165 348 GCRLMSTIRQI 358 (1134)
Q Consensus 348 ~~~l~~tl~~h 358 (1134)
-.+.+....+|
T Consensus 133 p~k~~g~~g~h 143 (238)
T KOG2444|consen 133 PNKVLGYVGQH 143 (238)
T ss_pred cCceeeeeccc
Confidence 77766666555
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=82.53 E-value=1.6e+02 Score=38.05 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=69.8
Q ss_pred cccEEEEEEcCCC---C---eEEEEEcCCeEEEEEeccCCccccce-ecccccCCCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 208 SSAIIWLELCLPM---R---LLFVLYSNGQLMSCSVSKKGLKLAEF-IKIDKELGSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 208 ~~~V~~i~fsp~~---~---~la~~~sDG~v~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
...|.|++++|-+ + .++++.=+..+.+............. ...+. -...+.-..|--|..+|.++..||.+
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~--iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEI--IPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCc--cchheeeEEeeccceEEEEEcCCceE
Confidence 4667788888763 2 56666655555444433221111100 00000 01233444565667899999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
.-|.++..++..+... +.. --+.|+.-=.|+..++.-+-+..|+-.-++.-.+..++..+
T Consensus 608 ~~fv~d~~tg~lsd~K----------k~~-----lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spl 667 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRK----------KVT-----LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPL 667 (1096)
T ss_pred EEEEEEcccceEcccc----------ccc-----cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEecc
Confidence 9998885443211100 000 02456666677765554333445677778887776555444
No 396
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.42 E-value=82 Score=34.50 Aligned_cols=62 Identities=13% Similarity=-0.011 Sum_probs=41.2
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeE-EEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
-|+.++.+.-+|.+++...+.+.. .|. ..-.+.+- .....+++.+|-.|+.|++...-|...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~-----~w~--f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ-----IWN--FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh-----eee--eeehhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 356688899999999988765421 110 00011221 234678999999999999988877764
No 397
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.44 E-value=48 Score=38.85 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=51.4
Q ss_pred CCeEEEEECCCCCEEEEee-----------eCC-eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEE
Q 001165 257 GDAVCASIAPEQQILAVGT-----------RRG-VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIA 324 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~-----------~dg-~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~ 324 (1134)
...+.++|.++|++.++-. ..+ .|.+++-.+..+... ....+.. .....+.++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-----------~~~vfa~----~l~~p~Gi~ 78 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-----------KSNVFAE----ELSMVTGLA 78 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-----------eeEEeec----CCCCcccee
Confidence 4567889999999877643 122 565554332211110 1112111 233457899
Q ss_pred ECCCCCEEEEEECCCcEEEEecCCC--------eeEEEeccC---CCCceeeeEEcCCC
Q 001165 325 WTPDNSAFAVGWKSRGLTVWSVSGC--------RLMSTIRQI---SLSSISSPIVKPNQ 372 (1134)
Q Consensus 325 fSPDG~~Lasg~~Dg~I~vWdv~~~--------~l~~tl~~h---~~~~V~sv~~sp~~ 372 (1134)
|.++| +++ +....-+++.+..+. .++..+... +....+.+++.|++
T Consensus 79 ~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG 135 (367)
T TIGR02604 79 VAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG 135 (367)
T ss_pred EecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC
Confidence 99999 444 445444445465331 122223221 12346788888887
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.98 E-value=43 Score=41.75 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=48.8
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEEC--CCCCEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWT--PDNSAFAV 334 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fS--PDG~~Las 334 (1134)
..++.+.-|.-++.-++-+...++.|||.. .+...+. ......+.|.++.|+ |||+.+.+
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~---------------~~~lE~~---~~f~~~~~I~dLDWtst~d~qsiLa 91 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTR---------------SGVLEYE---ESFSEDDPIRDLDWTSTPDGQSILA 91 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcC---------------CcEEEEe---eeecCCCceeeceeeecCCCCEEEE
Confidence 445556666666655555556689999998 3333222 111257899999995 69998877
Q ss_pred EECCCcEEEEec
Q 001165 335 GWKSRGLTVWSV 346 (1134)
Q Consensus 335 g~~Dg~I~vWdv 346 (1134)
-|..+.|.++.-
T Consensus 92 VGf~~~v~l~~Q 103 (631)
T PF12234_consen 92 VGFPHHVLLYTQ 103 (631)
T ss_pred EEcCcEEEEEEc
Confidence 777889999864
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.65 E-value=7.6 Score=49.91 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=75.8
Q ss_pred CCcccEEEEEEcCCCCeEEEEE-cCC-eEEEEEeccCCccccceeccccc--C---CCCCeEEEEECCCCCE-EEEeeeC
Q 001165 206 PISSAIIWLELCLPMRLLFVLY-SNG-QLMSCSVSKKGLKLAEFIKIDKE--L---GSGDAVCASIAPEQQI-LAVGTRR 277 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~-sDG-~v~l~~~~~~~~~~~~~~~~~~~--~---~~~~~~~va~spdg~l-lAsG~~d 277 (1134)
.....+..+...+|+...++.. ++| -|+.+++..+.........+.+. . ...-..|+.|||.-.. .|+...|
T Consensus 98 ~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d 177 (1405)
T KOG3630|consen 98 EKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD 177 (1405)
T ss_pred eccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccc
Confidence 4456677777778866555543 334 46667775443221111111000 0 0123458899997654 6777889
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
+.|++..+........ .+ .-+..++|++|||-|+.++.|-..|++.-+-...
T Consensus 178 lsl~V~~~~~~~~~v~--------------s~-----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVT--------------SF-----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred cchhhhhhhhhhhhhc--------------cc-----CcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 9999988762111110 00 1356789999999999999999999998886644
No 400
>PRK10115 protease 2; Provisional
Probab=80.34 E-value=1.8e+02 Score=37.20 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=36.5
Q ss_pred eEEEEECCCCCEEEEeeeCC-----eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 259 AVCASIAPEQQILAVGTRRG-----VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg-----~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
+..+.+||||++||.+.+.+ ++++.|+. +|+.+... ..+.-..++|++||+.|+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~---------------tg~~l~~~------i~~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE---------------TGNWYPEL------LDNVEPSFVWANDSWTFY 187 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECC---------------CCCCCCcc------ccCcceEEEEeeCCCEEE
Confidence 44678999999999865432 46677766 33321110 111125699999999777
Q ss_pred EEECC
Q 001165 334 VGWKS 338 (1134)
Q Consensus 334 sg~~D 338 (1134)
-+..+
T Consensus 188 y~~~~ 192 (686)
T PRK10115 188 YVRKH 192 (686)
T ss_pred EEEec
Confidence 66543
No 401
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=78.74 E-value=1.3e+02 Score=34.43 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=56.3
Q ss_pred CeEEEEECCCCCEEEEee-eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~-~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
-.+.++||||++.+-.+- ..+.|.-|+++...... .+....... ..+.|.--.++...||++-+++-
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~---------~~~~~~~~~---~~~~G~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI---------GGRRGFVDF---DEEPGLPDGMAVDADGNLWVAAV 231 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc---------CCcceEEEc---cCCCCCCCceEEeCCCCEEEecc
Confidence 345899999998766654 44778888777321111 111111111 11345555667777888776554
Q ss_pred CCC-cEEEEecCCCeeEEEeccCCCCceeeeEE
Q 001165 337 KSR-GLTVWSVSGCRLMSTIRQISLSSISSPIV 368 (1134)
Q Consensus 337 ~Dg-~I~vWdv~~~~l~~tl~~h~~~~V~sv~~ 368 (1134)
.+| .|.+|+.. ++++..++-. ...+++++|
T Consensus 232 ~~g~~v~~~~pd-G~l~~~i~lP-~~~~t~~~F 262 (307)
T COG3386 232 WGGGRVVRFNPD-GKLLGEIKLP-VKRPTNPAF 262 (307)
T ss_pred cCCceEEEECCC-CcEEEEEECC-CCCCccceE
Confidence 444 89999998 5666665543 134555555
No 402
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.49 E-value=90 Score=36.78 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=48.4
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCC--cceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecC
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQ--HKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~--~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
+.|.--++++.++..+.+.=|-+.. +.+++.... ...|++.++.||||.+.||+.-++.+|.+++...+.
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm------~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM------DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee------cCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 5565555555445545566666643 344443321 136899999999999999999999999999986543
No 403
>PRK13684 Ycf48-like protein; Provisional
Probab=78.34 E-value=1.4e+02 Score=34.58 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=65.2
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
.+.+.++.+.|++..+ .+...|.++.-.-+....+.. +.. .....++++++.|+++++++| ..|.+++=..+
T Consensus 172 ~g~~~~i~~~~~g~~v-~~g~~G~i~~s~~~gg~tW~~--~~~---~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d- 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYV-AVSSRGNFYSTWEPGQTAWTP--HQR---NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD- 243 (334)
T ss_pred cceEEEEEECCCCeEE-EEeCCceEEEEcCCCCCeEEE--eeC---CCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-
Confidence 4578889999987554 455667655311111111111 110 123567889999999988876 45766432222
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEE
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 354 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~t 354 (1134)
.....+.... ........+.++.|.|++..+++| .+|.+ +.+..+++-...
T Consensus 244 ~G~sW~~~~~--------------~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v-~~S~d~G~tW~~ 294 (334)
T PRK13684 244 DLESWSKPII--------------PEITNGYGYLDLAYRTPGEIWAGG-GNGTL-LVSKDGGKTWEK 294 (334)
T ss_pred CCCccccccC--------------CccccccceeeEEEcCCCCEEEEc-CCCeE-EEeCCCCCCCeE
Confidence 1111111000 000012357889999998876665 44544 456666554433
No 404
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=78.25 E-value=17 Score=46.39 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=57.6
Q ss_pred EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE-EeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC
Q 001165 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY-TFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 271 lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~-~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
..+|-.+..+..||..-.+. +++. ..+.+ .....-.|++=+.+| +||+|+.+|.||++|-.|.
T Consensus 545 tflGls~n~lfriDpR~~~~-------------k~v~~~~k~Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~ 608 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGN-------------KLVDSQSKQY--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK 608 (794)
T ss_pred eEEEECCCceEEeccCCCCC-------------ceeecccccc--ccCCCceEEEecCCc-eEEEEeCCCcEEeecccch
Confidence 45677788888888873221 1110 00001 133457788877777 6899999999999998776
Q ss_pred eeEEEeccCCCCceeeeEEcCCC
Q 001165 350 RLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 350 ~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
+....+++- ..+|.++..+.||
T Consensus 609 ~AKT~lp~l-G~pI~~iDvt~DG 630 (794)
T PF08553_consen 609 RAKTALPGL-GDPIIGIDVTADG 630 (794)
T ss_pred hhhhcCCCC-CCCeeEEEecCCC
Confidence 655556665 3689999999999
No 405
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.91 E-value=46 Score=32.83 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=66.3
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccC-CCCCeEEEE---ECC--CCCEEEEeeeCCeEEEEecccc
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAVCAS---IAP--EQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~va---~sp--dg~llAsG~~dg~V~lwd~~~~ 288 (1134)
.|......++.++..|+|.+.+.................+ -...++|++ |.| +...|.+|+.. ++..||+.+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccC
Confidence 3445555688888889998876543322111000000011 135677764 433 45578887754 7899999854
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC----CCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP----DG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
... +..+-...|+++.+-. +...+++|+ +..|.-+|..|...+.+.
T Consensus 84 ~d~--------------------Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 84 SDL--------------------FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred chh--------------------hhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 322 1111335677776632 334555555 467888888877766554
No 406
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=77.82 E-value=2.1e+02 Score=37.11 Aligned_cols=76 Identities=7% Similarity=-0.046 Sum_probs=51.2
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc--------eecc-----cccCCCCCeEEEEECCCCCEEE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE--------FIKI-----DKELGSGDAVCASIAPEQQILA 272 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~--------~~~~-----~~~~~~~~~~~va~spdg~llA 272 (1134)
.....|.+|.....+..++.+++||+|.+.+.......... .+.. ..+.....+..++|||.+..++
T Consensus 257 ~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 257 TLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred ccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 44577889999999999999999999999876543211100 0000 0011122445689999999888
Q ss_pred EeeeCCeEE
Q 001165 273 VGTRRGVVE 281 (1134)
Q Consensus 273 sG~~dg~V~ 281 (1134)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888888876
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=77.78 E-value=70 Score=37.86 Aligned_cols=75 Identities=12% Similarity=0.016 Sum_probs=34.8
Q ss_pred CeEEEEECCCCCEEE-EeeeCCeEEEEeccccccceeeeeeeccCcceEEE----EeecccCCCCcCeEEEEECCCCCEE
Q 001165 258 DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY----TFCRYSMDDTGPVSCIAWTPDNSAF 332 (1134)
Q Consensus 258 ~~~~va~spdg~llA-sG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~----~l~~~~~~h~g~V~~l~fSPDG~~L 332 (1134)
-++.+.+|.|.++|- ++..+|.||.||+.+......+-++.-. |...+ ..++ ..-.|...-|..|-||++|
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lG--G~~~~~~~~~v~g--~~l~GgPqMvqlS~DGkRl 388 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLG--GSIRKGDHPVVKG--KRLRGGPQMVQLSLDGKRL 388 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-B--TTTT-B--TTS--------S----EEE-TTSSEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEEC--cEeccCCCccccc--cccCCCCCeEEEccCCeEE
Confidence 367899999999765 5567999999999987644433222110 10000 0000 0013456889999999988
Q ss_pred EEEE
Q 001165 333 AVGW 336 (1134)
Q Consensus 333 asg~ 336 (1134)
.+..
T Consensus 389 YvTn 392 (461)
T PF05694_consen 389 YVTN 392 (461)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 7654
No 408
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.77 E-value=6.6 Score=30.54 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=25.7
Q ss_pred cCeEEEEECCCCC---EEEEEECCCcEEEEecCC
Q 001165 318 GPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 318 g~V~~l~fSPDG~---~Lasg~~Dg~I~vWdv~~ 348 (1134)
|+|.+++|||++. .||-+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5799999998544 888877779999999974
No 409
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=76.45 E-value=14 Score=45.62 Aligned_cols=71 Identities=11% Similarity=-0.031 Sum_probs=42.5
Q ss_pred EEEEEcCCCCeEEEEEcCCe-----EEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 212 IWLELCLPMRLLFVLYSNGQ-----LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~sDG~-----v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..++|-|+|..+++..+||. |.++..++.. +.. ...+..-...++.++||-....+|++. ...+++|...
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr--HGe--f~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttk 324 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR--HGE--FDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTK 324 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcc--cCC--ccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEcc
Confidence 45789999999999887764 3343333211 110 000001124566778888777777644 4579999876
Q ss_pred c
Q 001165 287 E 287 (1134)
Q Consensus 287 ~ 287 (1134)
+
T Consensus 325 N 325 (1243)
T COG5290 325 N 325 (1243)
T ss_pred c
Confidence 3
No 410
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.09 E-value=0.81 Score=56.62 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=77.1
Q ss_pred ECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEE-----------EEECCCCCEE
Q 001165 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSC-----------IAWTPDNSAF 332 (1134)
Q Consensus 264 ~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~-----------l~fSPDG~~L 332 (1134)
|-++..++..|-.+|+|++-+++..... -+. +|...++. -..||||+.+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~----------------l~r----sHs~~~~d~a~~~~g~~~l~~lSpDGtv~ 250 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRS----------------LFR----SHSQRVTDMAFFAEGVLKLASLSPDGTVF 250 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHH----------------HHH----hcCCCcccHHHHhhchhhheeeCCCCcEE
Confidence 3345677888889999999887732110 000 13222222 2379999999
Q ss_pred EEEECCCcEEEEecC--CC---eeEEEeccCCCCc-eeeeEEcCCC-----CCCcceEEEcc----eeEEEeCCCceEEE
Q 001165 333 AVGWKSRGLTVWSVS--GC---RLMSTIRQISLSS-ISSPIVKPNQ-----DCKYEPLMSGT----SMMQWDEYGYRLYA 397 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~--~~---~l~~tl~~h~~~~-V~sv~~sp~~-----~~~~~~l~sgs----~i~~W~~~~~~l~~ 397 (1134)
|.++.||.++.|-+. |. +|.+..+.|...+ |..+ ++... ..+....+++. ..++|....-+|..
T Consensus 251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll 329 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL 329 (1283)
T ss_pred EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhh
Confidence 999999999999863 32 2333444442222 3333 33221 11224455554 67778765544431
Q ss_pred --------EecCCCccEEEEec----CCEEEeeecCCcEEeee
Q 001165 398 --------IEEGSSERVLIFSF----GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 398 --------~~~~h~~~v~~~s~----~k~l~S~s~d~ti~~w~ 428 (1134)
+...|+..|.-.+. ...+++.+.++++++|.
T Consensus 330 ~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 330 DKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred hhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 11123333322221 22345567777777775
No 411
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.47 E-value=49 Score=39.81 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=36.0
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceeccccc-CCCCCeEEEEECCCC
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIAPEQ 268 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~va~spdg 268 (1134)
..-..|+|.|+++++++--..|++++++...........+..... .+......++++|++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345789999999877665546999887654322111111110000 123567899999997
No 412
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.39 E-value=89 Score=30.91 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=67.2
Q ss_pred EEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-----CCCEEEEEE
Q 001165 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-----DNSAFAVGW 336 (1134)
Q Consensus 262 va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-----DG~~Lasg~ 336 (1134)
-.|......|+.++..|+|.|++.......... ....+..|. -...|++|+-.| +...|..|+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------~~~~i~~LN-----in~~italaaG~l~~~~~~D~LliGt 71 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------QDSDISFLN-----INQEITALAAGRLKPDDGRDCLLIGT 71 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-------ccCceeEEE-----CCCceEEEEEEecCCCCCcCEEEEec
Confidence 345556667888889999999987633211100 011122221 134566654433 345788887
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEE
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAI 398 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~ 398 (1134)
. .++-.+|+....-+.. +.. .+.|+++.+..-+....+.++.|+ ++.-+|.++.+++-.
T Consensus 72 ~-t~llaYDV~~N~d~Fy-ke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 72 Q-TSLLAYDVENNSDLFY-KEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred c-ceEEEEEcccCchhhh-hhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 6 5899999976543221 111 356777777544432224455555 555566666665433
No 413
>PHA02713 hypothetical protein; Provisional
Probab=74.08 E-value=86 Score=39.08 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCCEEEEEeCCC--eE-EEEccCCcEEEeC
Q 001165 473 DGMFLAVAGLHG--LI-LYDIRQKKWRVFG 499 (1134)
Q Consensus 473 dG~~LAsgg~dG--~i-lwd~~sg~Wk~F~ 499 (1134)
+|+..++||.+| .+ .||..+++|....
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchh
Confidence 889999999999 77 9999999998654
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.90 E-value=22 Score=44.16 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=53.9
Q ss_pred cCCcccccCCCCCCCCCceeEEEeecCeEEEEEc--CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEE--cCCce
Q 001165 5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW--SPDTK 80 (1134)
Q Consensus 5 ~gwp~~~~~~~~~~~~~~~iv~fS~dg~llAs~s--~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w--SPDg~ 80 (1134)
++|-+..-.+++. .....+.-|.-++ +|++. ..++.|||.. ..+ + .+ .+.+.+++.+.++.| .|||+
T Consensus 17 ~~w~~t~~~~T~i--~~~~li~gss~~k-~a~V~~~~~~LtIWD~~-~~~-l-E~---~~~f~~~~~I~dLDWtst~d~q 87 (631)
T PF12234_consen 17 IEWLLTSTFETGI--SNPSLISGSSIKK-IAVVDSSRSELTIWDTR-SGV-L-EY---EESFSEDDPIRDLDWTSTPDGQ 87 (631)
T ss_pred EEEEEEEEEecCC--CCcceEeecccCc-EEEEECCCCEEEEEEcC-CcE-E-EE---eeeecCCCceeeceeeecCCCC
Confidence 4566665555552 1223355566554 44433 4589999997 333 1 12 233445788888888 78999
Q ss_pred EEEEEeCCCEEEEEEE
Q 001165 81 LIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 81 ~Lav~t~dg~l~lw~l 96 (1134)
.|.+.+-.+.|.+|.-
T Consensus 88 siLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEEEEEcCcEEEEEEc
Confidence 9988888999999875
No 415
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.38 E-value=7.2 Score=48.42 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=47.1
Q ss_pred CCCCEEEEeeeCCeEEEEeccc---cccceeeeeeeccCcceEEEEeeccc-------CCCCcCeEEEEECC----CCCE
Q 001165 266 PEQQILAVGTRRGVVELYDLAE---SASLIRTVSLYDWGMREVYYTFCRYS-------MDDTGPVSCIAWTP----DNSA 331 (1134)
Q Consensus 266 pdg~llAsG~~dg~V~lwd~~~---~~~~~~~l~l~~~~~~~~l~~l~~~~-------~~h~g~V~~l~fSP----DG~~ 331 (1134)
++...++++..||.+....... ............ ......+.+.. ....+.+.+++.++ +..+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFND---SSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF 232 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----ST---HHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCC---CchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE
Confidence 4566788889999888887764 111111100000 00000000000 01234567777777 7789
Q ss_pred EEEEECCCcEEEEecCCCeeEEEe
Q 001165 332 FAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 332 Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
|++-+.|+++|+||+.+++++.+.
T Consensus 233 l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEETTSEEEEEETTTTCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999999987665
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=72.95 E-value=67 Score=34.37 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=62.7
Q ss_pred eCC-CeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC
Q 001165 140 SDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (1134)
Q Consensus 140 ~d~-~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp 218 (1134)
+.| +.++++++...|..+....+...... ....-+.|..+.|+.
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~-----------------------------------~F~Tv~~V~~l~y~~ 69 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLC-----------------------------------TFSTVGRVLQLVYSE 69 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeE-----------------------------------EEcchhheeEEEecc
Confidence 345 77888888888888766633222110 012236788999999
Q ss_pred CCCeEEEEEcCCeE--------EE-EEeccCCccccc----eecc--------------cccCCCCCeEEEEECCCCCEE
Q 001165 219 PMRLLFVLYSNGQL--------MS-CSVSKKGLKLAE----FIKI--------------DKELGSGDAVCASIAPEQQIL 271 (1134)
Q Consensus 219 ~~~~la~~~sDG~v--------~l-~~~~~~~~~~~~----~~~~--------------~~~~~~~~~~~va~spdg~ll 271 (1134)
.|+++++.=++... |+ |+.......... ++.. ...+-...++|++-.|-..-|
T Consensus 70 ~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L 149 (215)
T PF14761_consen 70 AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL 149 (215)
T ss_pred ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE
Confidence 99999997554332 22 332211100000 1000 000113567899888855556
Q ss_pred EEeeeCCeEEEEecc
Q 001165 272 AVGTRRGVVELYDLA 286 (1134)
Q Consensus 272 AsG~~dg~V~lwd~~ 286 (1134)
++|+ ++++.||.+.
T Consensus 150 lVg~-~~~l~lf~l~ 163 (215)
T PF14761_consen 150 LVGC-GNKLVLFTLK 163 (215)
T ss_pred EEEc-CCEEEEEEEE
Confidence 6665 4588999987
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.75 E-value=1.5e+02 Score=32.21 Aligned_cols=102 Identities=9% Similarity=0.131 Sum_probs=63.1
Q ss_pred eEEEEECCCCCEE-EEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccC-CCCcCeEEEEECCCCCEEEEEE
Q 001165 259 AVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSM-DDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 259 ~~~va~spdg~ll-AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~-~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
...++|+.+.+.+ .+-+.+-+|.-||.+-.++..- .++.+..++...+ +|.-| -.++...+|...++.+
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------nr~~i~dlrk~~~~e~~~P-DGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------NRKVIFDLRKSQPFESLEP-DGMTIDTEGNLYVATF 230 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCccccc--------CcceeEEeccCCCcCCCCC-CcceEccCCcEEEEEe
Confidence 3467888877654 4556778898899774442110 1111111111000 11111 1233456888889999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcC
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
.-++|.-.|..+++.+.++.-. +..|++++|--
T Consensus 231 ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred cCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 9999999999999988888765 66788888843
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=71.61 E-value=46 Score=40.47 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=66.2
Q ss_pred cccEEEEEEcCCCC----eEEEEEcCCeEEEEEeccCCccccceeccc-ccC-CCCC--eEEEEECCCCCEEEEeeeCCe
Q 001165 208 SSAIIWLELCLPMR----LLFVLYSNGQLMSCSVSKKGLKLAEFIKID-KEL-GSGD--AVCASIAPEQQILAVGTRRGV 279 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~----~la~~~sDG~v~l~~~~~~~~~~~~~~~~~-~~~-~~~~--~~~va~spdg~llAsG~~dg~ 279 (1134)
=..|..+.|+|-+. .+..+.-...|.+|.+.........-...+ .-. ..-. .-.+.|+|+...|++=.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 35677788877632 344444555678888743221110000000 000 0011 124679999998887665555
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC-CcEEEEecC
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVS 347 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D-g~I~vWdv~ 347 (1134)
=.++++.-+. ......+ ...|-|.|-+|++||++|++|-.. =.-.+||-.
T Consensus 136 SV~~sV~~d~-------------srVkaDi-----~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 136 SVLPSVHCDS-------------SRVKADI-----KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEeeeeeeCC-------------ceEEEec-----cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4566665211 1111111 146889999999999998887432 234678754
No 419
>PHA03098 kelch-like protein; Provisional
Probab=71.52 E-value=1.3e+02 Score=37.00 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCCEEEEEeCC-----CeE-EEEccCCcEEEeCC
Q 001165 473 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGD 500 (1134)
Q Consensus 473 dG~~LAsgg~d-----G~i-lwd~~sg~Wk~F~~ 500 (1134)
+|+.++.||.+ ..+ .||..++.|..+..
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 78888888865 367 99999999998764
No 420
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=71.34 E-value=2.5e+02 Score=34.31 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=21.7
Q ss_pred CEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 330 SAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 330 ~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
..+..++.+|.|.-.|..+++.+-...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeec
Confidence 577778888999999998888776654
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=71.28 E-value=13 Score=43.96 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=52.7
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC---------
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD--------- 328 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD--------- 328 (1134)
.+.+++.+|++++.|+...=|.|.|+|+. ++..++.++|+...+-+.+....=...
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~---------------~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVA---------------RGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECC---------------CChhhhhhccCccceEEEEEeecccccccccccccC
Confidence 47899999999999987666999999998 455555555533222222222111110
Q ss_pred -----CCEEE-EEECCCcEEEEecCCCeeEEEec
Q 001165 329 -----NSAFA-VGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 329 -----G~~La-sg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
..+|+ =+-..|.|.||++..+..+.++.
T Consensus 374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11222 24456899999998777666553
No 422
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=71.26 E-value=8.6 Score=29.93 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=25.8
Q ss_pred cceeEEEEcCCce---EEEEEeCCCEEEEEEEEe
Q 001165 68 GENLQAVWSPDTK---LIAVVTSSLYLHIFKVQI 98 (1134)
Q Consensus 68 G~~~~v~wSPDg~---~Lav~t~dg~l~lw~l~~ 98 (1134)
|.+.+++|||++. .||.+-..|.++|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5678999998655 888888889999999963
No 423
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.15 E-value=6.9 Score=29.35 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=18.9
Q ss_pred cceeEEEEcCCceEEEEEeCC---CEEEEE
Q 001165 68 GENLQAVWSPDTKLIAVVTSS---LYLHIF 94 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~d---g~l~lw 94 (1134)
+......|||||+.|+-++.. |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456789999999998887654 444444
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=69.56 E-value=1.2e+02 Score=38.44 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=75.7
Q ss_pred ccEEEEEEcCCC--CeEEEEEcCCeEEEEEecc-------C--Cccc---cceeccc--ccCCCCCeEEEEEC--CCCCE
Q 001165 209 SAIIWLELCLPM--RLLFVLYSNGQLMSCSVSK-------K--GLKL---AEFIKID--KELGSGDAVCASIA--PEQQI 270 (1134)
Q Consensus 209 ~~V~~i~fsp~~--~~la~~~sDG~v~l~~~~~-------~--~~~~---~~~~~~~--~~~~~~~~~~va~s--pdg~l 270 (1134)
-.|+.|..+--| ..++.+++||.|.+|.+.. . +... ...+.+. .+. ...+..++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceE
Confidence 345555555544 5788999999999997632 1 0000 0011111 111 2467889999 89999
Q ss_pred EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-----C-EEEEEECCCcEEEE
Q 001165 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-----S-AFAVGWKSRGLTVW 344 (1134)
Q Consensus 271 lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-----~-~Lasg~~Dg~I~vW 344 (1134)
||+++....|-||-....... .. .. ....|..-|-+|+|-++. . .+++++-.|.+.+|
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r--~~------~~--------~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDER--FY------HV--------PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred EEEecCCceEEEEEEeccccc--cc------cc--------cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 999999999999887621100 00 00 011245668899997643 2 78888889999998
Q ss_pred ec
Q 001165 345 SV 346 (1134)
Q Consensus 345 dv 346 (1134)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 87
No 425
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=69.35 E-value=2.2e+02 Score=35.59 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=42.8
Q ss_pred cCCCCEEEEEeCCC------eE-EEEccCCcEEEeCCccceeeeEEEEEEee-CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 471 SKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 471 SpdG~~LAsgg~dG------~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~-~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.-+|+..++||.+| .+ .||..++.|+........+ ...+++-. +.++++|++........+..|+..
T Consensus 425 ~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccceEEEECCEEEEECCccCCCccceEEEEcCC
Confidence 44899999999655 46 8999999999765433322 12244444 455677766654445556677663
No 426
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.90 E-value=52 Score=39.42 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=86.8
Q ss_pred CCCCE-EEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCC----cceEEEcc--eeEEEeCC--CceEEE
Q 001165 327 PDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK----YEPLMSGT--SMMQWDEY--GYRLYA 397 (1134)
Q Consensus 327 PDG~~-Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~----~~~l~sgs--~i~~W~~~--~~~l~~ 397 (1134)
.|.++ |.++....++.=-|+..|+.+....-+ . -|+-+.+.|+.... -+.++.-+ .+.-||++ +...+.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~-~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE-D-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeecc-C-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 34443 445566678888899999988887765 2 37777787775311 02233222 67778874 322334
Q ss_pred EecCCC----ccEEEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEc
Q 001165 398 IEEGSS----ERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 471 (1134)
Q Consensus 398 ~~~~h~----~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~S 471 (1134)
..++|+ ....++.. .-+++.||.+|.|+++|- .+.. --..+-+-..+|..+..+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~-------------------AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRR-------------------AKTALPGLGDAIKHVDVT 480 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhh-------------------hhhcccccCCceeeEEee
Confidence 444442 12233333 447888999999999884 2211 012344566789999999
Q ss_pred CCCCEEEEEeCCCeEEEEc
Q 001165 472 KDGMFLAVAGLHGLILYDI 490 (1134)
Q Consensus 472 pdG~~LAsgg~dG~ilwd~ 490 (1134)
.||++|...+..=.++-++
T Consensus 481 adGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 481 ADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccCcEEEEecccEEEEEEE
Confidence 9999988665544446554
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=67.57 E-value=1.5e+02 Score=36.05 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=39.7
Q ss_pred cCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 471 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 471 SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.-+|+..+.|| .+ .||..+++|.........+ .......-.+.++++|++........+.+|+.
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r-~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPR-DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCc-cccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 34676666664 46 8999999999876544332 22333444567788887653322345667765
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=67.05 E-value=2.6e+02 Score=33.18 Aligned_cols=115 Identities=11% Similarity=0.151 Sum_probs=66.9
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEE-EEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVY-YTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l-~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
...+..+++++++++|....-.+-|+-. +.. .. ........++.+.|.+||..++++ .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G-----------------~~~W~~---~~~~~~~~l~~v~~~~dg~l~l~g-~ 299 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG-----------------QPYWQP---HNRASARRIQNMGWRADGGLWLLT-R 299 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC-----------------CcceEE---ecCCCccceeeeeEcCCCCEEEEe-C
Confidence 3456678888888887654433334322 110 00 001134568999999999988776 4
Q ss_pred CCcEEEEecCCCee-----EEEeccC-CCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEe
Q 001165 338 SRGLTVWSVSGCRL-----MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l-----~~tl~~h-~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~ 399 (1134)
+|+ .+|+..+++. +..+... ....+.++.+.+++ +.+++|. -+......+++-|...
T Consensus 300 ~G~-l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 300 GGG-LYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRSTDGGKSWKRD 363 (398)
T ss_pred Cce-EEEecCCCCcccccceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeCCCCcceeEc
Confidence 455 4666665542 2222211 12347888888887 7777776 3444555666766654
No 429
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.00 E-value=33 Score=40.02 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=84.4
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~ 148 (1134)
.+.++-..|||+.|.+-+. ..+.+++++........--...++..+. .++. -..+-..|..+++.
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~----------~Vte----~l~lL~Gg~SLLv~ 286 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRH----------QVTE----QLYLLSGGFSLLVV 286 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHH----------HHHH----HHHHHhCceeEEEE
Confidence 4566888999999999887 6899999975421111000011110000 0000 00112346778999
Q ss_pred ecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEc
Q 001165 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (1134)
Q Consensus 149 t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s 228 (1134)
..||-|.-| +|........+ ..++...+ ....+.-+.-....+.|+..+.
T Consensus 287 ~~dG~vsQW-Fdvr~~~~p~l-------~h~R~f~l----------------------~pa~~~~l~pe~~rkgF~~l~~ 336 (733)
T COG4590 287 HEDGLVSQW-FDVRRDGQPHL-------NHIRNFKL----------------------APAEVQFLLPETNRKGFYSLYR 336 (733)
T ss_pred cCCCceeee-eeeecCCCCcc-------eeeecccc----------------------CcccceeeccccccceEEEEcC
Confidence 999987654 22211111100 01111100 0112222222223356777777
Q ss_pred CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 229 NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 229 DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
+|+...+......+.-.+. -.+.+.-+++||++..+++ -+.|.|+++.+++
T Consensus 337 ~G~L~~f~st~~~~lL~~~-------~~~~~~~~~~Sp~~~~Ll~-e~~gki~~~~l~N 387 (733)
T COG4590 337 NGTLQSFYSTSEKLLLFER-------AYQAPQLVAMSPNQAYLLS-EDQGKIRLAQLEN 387 (733)
T ss_pred CCceeeeecccCcceehhh-------hhcCcceeeeCcccchhee-ecCCceEEEEecC
Confidence 8877665433222111000 0134456899999998887 4567899999883
No 430
>PHA03098 kelch-like protein; Provisional
Probab=64.94 E-value=1.3e+02 Score=37.06 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=39.1
Q ss_pred cCCCCEEEEEeCCC--------eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 471 SKDGMFLAVAGLHG--------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 471 SpdG~~LAsgg~dG--------~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.-+|+..+.||.++ .+ .||..+++|.......... .........+.++|+|+.........+.+|+.
T Consensus 435 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 435 YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 34677777787532 26 9999999999876433222 11222233455666665543333456677765
No 431
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.54 E-value=22 Score=26.50 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=19.5
Q ss_pred CCcCeEEEEECCCCCEEEEEE-CC--CcEEEE
Q 001165 316 DTGPVSCIAWTPDNSAFAVGW-KS--RGLTVW 344 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~-~D--g~I~vW 344 (1134)
..+.-..-+|||||+.|+=++ .+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456678899999999776554 44 555555
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=61.60 E-value=2.3e+02 Score=30.39 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=32.6
Q ss_pred CEEEEEECCCcEEEEecC--CCeeEEEeccCCCCceeeeEEcCCCCCCcceEEE
Q 001165 330 SAFAVGWKSRGLTVWSVS--GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 381 (1134)
Q Consensus 330 ~~Lasg~~Dg~I~vWdv~--~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s 381 (1134)
..|..+...+.|.+|++. ..++.+++.. -+.|..+.++..| +++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~G----DYlvT 76 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAG----DYLVT 76 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEecccc----ceEEE
Confidence 344443455789999987 5667888876 3578888888888 66663
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=60.79 E-value=3.6e+02 Score=32.25 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCEEEEEeC-CCeE-EEEccCC
Q 001165 464 PVQHVAASKDGMFLAVAGL-HGLI-LYDIRQK 493 (1134)
Q Consensus 464 ~V~~va~SpdG~~LAsgg~-dG~i-lwd~~sg 493 (1134)
-|+.+.+|.|.++|.++.- +|.+ .||+..-
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 3789999999999998885 8999 9999764
No 434
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=60.74 E-value=14 Score=25.72 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=19.4
Q ss_pred eeEEEEcCCceEEEEEeCCCEEEEEE
Q 001165 70 NLQAVWSPDTKLIAVVTSSLYLHIFK 95 (1134)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~lw~ 95 (1134)
+.+++-++. .+|++|+.++||+|.
T Consensus 4 i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccCC--EEEEEeCCCeEEecC
Confidence 456777664 999999999999984
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=60.44 E-value=3.4e+02 Score=31.92 Aligned_cols=227 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred EEcCCCCeEEEEEc---CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccc
Q 001165 215 ELCLPMRLLFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1134)
Q Consensus 215 ~fsp~~~~la~~~s---DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~ 291 (1134)
.|.++|+.++.+++ ...++++++..+...+...... .......++|+.+.+.--..+.+++--|++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g------~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~----- 110 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG------DNTFGGFLSPDDRALYYVKNGRSLRRVDLD----- 110 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-------B-TTT-EE-TTSSEEEEEETTTEEEEEETT-----
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC------CCccceEEecCCCeEEEEECCCeEEEEECC-----
Q ss_pred eeeeeeeccCcceEEEEeecccCCCCcCeEEEEE--CCCCCEEEEEECCC----------------------cEEEEecC
Q 001165 292 IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW--TPDNSAFAVGWKSR----------------------GLTVWSVS 347 (1134)
Q Consensus 292 ~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f--SPDG~~Lasg~~Dg----------------------~I~vWdv~ 347 (1134)
+.+......- ..+.+....| +.|++.++-.-..+ .|.--|+.
T Consensus 111 ----------T~e~~~vy~~----p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 111 ----------TLEERVVYEV----PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp ----------T--EEEEEE------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred ----------cCcEEEEEEC----CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Q ss_pred CCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--------eeEEE--eCCCceEEEEecCCCccEEEEec----CC
Q 001165 348 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQW--DEYGYRLYAIEEGSSERVLIFSF----GK 413 (1134)
Q Consensus 348 ~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--------~i~~W--~~~~~~l~~~~~~h~~~v~~~s~----~k 413 (1134)
+++....+.. ...+..+.|+|.+ ..++.-+ ..++| +..+.....+.+.....+.--.+ |+
T Consensus 177 tG~~~~v~~~--~~wlgH~~fsP~d----p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 177 TGERKVVFED--TDWLGHVQFSPTD----PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp T--EEEEEEE--SS-EEEEEEETTE----EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred CCceeEEEec--CccccCcccCCCC----CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Q ss_pred EEEeeec-----CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC----
Q 001165 414 CCLNRGV-----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---- 484 (1134)
Q Consensus 414 ~l~S~s~-----d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG---- 484 (1134)
.+.-.+. +..+.-.+..+++. .......+....-.|+||+++|-=|.|.
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~----------------------~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v 308 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGER----------------------RRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDV 308 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--E----------------------EEEEEE-SEEEEEE-TTSSEEEEEE-------
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCc----------------------eEEEeCCceeeeEEcCCCCEEEecCCCCCccc
Q ss_pred ------------eE-EEEccCCc
Q 001165 485 ------------LI-LYDIRQKK 494 (1134)
Q Consensus 485 ------------~i-lwd~~sg~ 494 (1134)
.+ ++++..++
T Consensus 309 ~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 309 ADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp ------------EEEEEETTTTE
T ss_pred cccccceecCCcEEEEeccccCc
No 436
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.13 E-value=3.6e+02 Score=32.06 Aligned_cols=148 Identities=9% Similarity=-0.028 Sum_probs=72.3
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~ 289 (1134)
....+..++++..++++ ..|.++.-.-.+...++.... .....++.+.+.+++.++++| .+|.+.. ..++.
T Consensus 240 sf~~v~~~~dG~~~~vg-~~G~~~~s~d~G~~~W~~~~~-----~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G- 310 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVS-SRGNFYLTWEPGQPYWQPHNR-----ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTG- 310 (398)
T ss_pred ceeeEEEcCCCCEEEEE-CCccEEEecCCCCcceEEecC-----CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCC-
Confidence 34556677777665554 456544311111111111111 113557789999999988776 5565433 32211
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc--CCCCceeeeE
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ--ISLSSISSPI 367 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~--h~~~~V~sv~ 367 (1134)
...... ....... ......++++.|.+|+..+++|. +|.+.. ...+++.....+. .-......+.
T Consensus 311 ~~~~~~---------~f~~~~~--~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~-s~D~G~tW~~~~~~~~~~~~ly~v~ 377 (398)
T PLN00033 311 LTEEDF---------DFEEADI--KSRGFGILDVGYRSKKEAWAAGG-SGILLR-STDGGKSWKRDKGADNIAANLYSVK 377 (398)
T ss_pred Cccccc---------ceeeccc--CCCCcceEEEEEcCCCcEEEEEC-CCcEEE-eCCCCcceeEccccCCCCcceeEEE
Confidence 000000 0011000 00123589999999998887775 355544 4455554333321 1023456777
Q ss_pred EcCCCCCCcceEEEcc
Q 001165 368 VKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs 383 (1134)
|.+++ +.++.|.
T Consensus 378 f~~~~----~g~~~G~ 389 (398)
T PLN00033 378 FFDDK----KGFVLGN 389 (398)
T ss_pred EcCCC----ceEEEeC
Confidence 76655 5555543
No 437
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=58.12 E-value=5.3e+02 Score=33.45 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.8
Q ss_pred CCC---EEEEEeCCCeE-EEEccCCc
Q 001165 473 DGM---FLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 473 dG~---~LAsgg~dG~i-lwd~~sg~ 494 (1134)
+|+ .++.++++|.+ +.|..+|+
T Consensus 455 ~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 455 DGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCC
Confidence 664 78899999999 99999885
No 438
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=56.84 E-value=5.9e+02 Score=33.59 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=45.5
Q ss_pred CCceeEEEeecCeEEEE-EcCCeEEEeecCCcceeEEEe-ecChhhHHhhcceeEEEEcCCc------eEEEEEeCCCEE
Q 001165 20 SSQQIIYFKVNNGLLLI-ASPCHIELWSSSQHKVRLGKY-KRDSESVQREGENLQAVWSPDT------KLIAVVTSSLYL 91 (1134)
Q Consensus 20 ~~~~iv~fS~dg~llAs-~s~~~l~IW~~~~~~~~l~~~-~r~~~sl~~~G~~~~v~wSPDg------~~Lav~t~dg~l 91 (1134)
....|+......+.+++ .+.+.+.-.-.+ ..-++.-+ .|.. -...+.|+++.||+ +.+|.++.|+++
T Consensus 538 ~~~~Iv~~avnr~qiVvalSngelvyfe~d-~sgql~E~~er~t----l~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 538 ERVRIVKCAVNRRQIVVALSNGELVYFEGD-VSGQLNEFTERVT----LSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred CceEEEEEeecceEEEEEccCCeEEEEEec-cCccceeeeeeee----eceeehhhccCCCCcchhhcceeeeeccccce
Confidence 44566554444444444 455555444443 22222222 2221 13467889998887 579999999999
Q ss_pred EEEEEEecC
Q 001165 92 HIFKVQITE 100 (1134)
Q Consensus 92 ~lw~l~~~~ 100 (1134)
+++.++...
T Consensus 613 riisL~p~d 621 (1205)
T KOG1898|consen 613 RIISLDPSD 621 (1205)
T ss_pred eEEEecCcc
Confidence 999998543
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.48 E-value=46 Score=35.96 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=47.9
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccCCccccc-eeccccc-------CCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE-FIKIDKE-------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
+...++++.+++++|.+++|++......... .+.+.-. .....++.+.++.+|.-|++ -.+|....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEeccc
Confidence 4567888999999999999999764322111 1111100 12367889999999987766 567888999877
No 440
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=54.27 E-value=3.8e+02 Score=30.59 Aligned_cols=109 Identities=9% Similarity=0.011 Sum_probs=57.6
Q ss_pred ccEEEEEEcCCCCeEEEEEcC-CeEEEEEeccCC-ccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC-eEEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKG-LKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG-VVELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sD-G~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg-~V~lwd~ 285 (1134)
..-+.|+||||++.+.++.+. ++++.+...... ...........-...+..=.+++-.+|.+-+++..+| .|.+|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 334579999999877777654 666666554211 1000000000000012222455556777765544444 7888876
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEE-CCCCCEEEEEEC
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW-TPDNSAFAVGWK 337 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f-SPDG~~Lasg~~ 337 (1134)
+ |+++....- ....+++++| .|+.+.|.+.+.
T Consensus 243 d----------------G~l~~~i~l----P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 243 D----------------GKLLGEIKL----PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred C----------------CcEEEEEEC----CCCCCccceEeCCCcCEEEEEec
Confidence 5 444444433 3355677777 566676655554
No 441
>PHA02713 hypothetical protein; Provisional
Probab=52.88 E-value=5.5e+02 Score=32.00 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=39.6
Q ss_pred cCCCCEEEEEeCCC------eE-EEEccC-CcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 471 SKDGMFLAVAGLHG------LI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 471 SpdG~~LAsgg~dG------~i-lwd~~s-g~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.-+|+..++||.++ .+ .||..+ ++|.......... ..+....-.+.++++|++.. ...+.+|+.
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-~~~~~~~~~~~iyv~Gg~~~---~~~~e~yd~ 532 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-SALHTILHDNTIMMLHCYES---YMLQDTFNV 532 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc-ccceeEEECCEEEEEeeecc---eeehhhcCc
Confidence 34678778888652 46 899999 7999877654433 22233334566778887753 224556655
No 442
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=50.66 E-value=5.9e+02 Score=33.17 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=84.1
Q ss_pred CCcccEEEEEEc---CC----CCeEEEEEcCCeEEEEEec------cCC-------ccccceecccccCCCCCeEEEEEC
Q 001165 206 PISSAIIWLELC---LP----MRLLFVLYSNGQLMSCSVS------KKG-------LKLAEFIKIDKELGSGDAVCASIA 265 (1134)
Q Consensus 206 ~~~~~V~~i~fs---p~----~~~la~~~sDG~v~l~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~va~s 265 (1134)
....+|..|.|+ .. .+.+++-+ .-.++++... ... +.....+... -.+...-..|+||
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~-~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS-DTGGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechh-hcCCCccceEEec
Confidence 567889999998 32 24555554 4455666521 101 0111111110 0133456689999
Q ss_pred CC-CCEEEEeeeCCeEEEEeccccc-cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEE
Q 001165 266 PE-QQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 343 (1134)
Q Consensus 266 pd-g~llAsG~~dg~V~lwd~~~~~-~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~v 343 (1134)
|. .+.+|+-...|...||++.... .....+.+.....|..+ +.++....-..|.|.++-+.|+++.. ..+.+
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~-----~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~ 228 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSII-----FDPEELSNWKRILWVSDSNRLLVCNR-SKLML 228 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCcccc-----CCCcccCcceeeEecCCCCEEEEEcC-CceEE
Confidence 94 4579999999999999993111 11111111100011110 11112344568999999888888876 58889
Q ss_pred EecCCCeeEEEecc-CCCCceeeeEEcCC
Q 001165 344 WSVSGCRLMSTIRQ-ISLSSISSPIVKPN 371 (1134)
Q Consensus 344 Wdv~~~~l~~tl~~-h~~~~V~sv~~sp~ 371 (1134)
.|+.+......+.. -....+-.+.-+|.
T Consensus 229 ~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 229 IDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred EECCCCCccchhccCCChhheeeEEecCC
Confidence 99987643221211 11334555555555
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.08 E-value=63 Score=34.91 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=49.6
Q ss_pred EECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEE
Q 001165 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 342 (1134)
Q Consensus 263 a~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~ 342 (1134)
.+..++.++.+-+.+|.+++||+.+.....+..++...=.... . ........|..+..+.+|.-+++-+. |...
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~--~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y 90 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---V--SDKSSSPNITSCSLTSNGVPIVTLSN-GDSY 90 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---c--ccCCCCCcEEEEEEcCCCCEEEEEeC-CCEE
Confidence 3555677788889999999999995443222211110000000 0 00025567999999999998877654 7888
Q ss_pred EEecCCC
Q 001165 343 VWSVSGC 349 (1134)
Q Consensus 343 vWdv~~~ 349 (1134)
.||..=+
T Consensus 91 ~y~~~L~ 97 (219)
T PF07569_consen 91 SYSPDLG 97 (219)
T ss_pred Eeccccc
Confidence 8887543
No 444
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=49.91 E-value=59 Score=40.36 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=39.3
Q ss_pred CCCCeEEEEEcCCeEEEEEeccCC----ccccc---------eeccc-ccC------CCCCeEEEEECC----CCCEEEE
Q 001165 218 LPMRLLFVLYSNGQLMSCSVSKKG----LKLAE---------FIKID-KEL------GSGDAVCASIAP----EQQILAV 273 (1134)
Q Consensus 218 p~~~~la~~~sDG~v~l~~~~~~~----~~~~~---------~~~~~-~~~------~~~~~~~va~sp----dg~llAs 273 (1134)
++...+++++.||.+..+...... ..... .+... .+. ....+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 577889999999998887765411 11000 00000 000 113355667777 7778989
Q ss_pred eeeCCeEEEEecc
Q 001165 274 GTRRGVVELYDLA 286 (1134)
Q Consensus 274 G~~dg~V~lwd~~ 286 (1134)
-+.|+++|+||+.
T Consensus 236 l~~D~~LRiW~l~ 248 (547)
T PF11715_consen 236 LSRDHTLRIWSLE 248 (547)
T ss_dssp EETTSEEEEEETT
T ss_pred EeCCCeEEEEECC
Confidence 9999999999999
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=49.67 E-value=23 Score=44.73 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=21.9
Q ss_pred EcCCCCeEEEEEcCCeEEEEEecc
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSK 239 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~ 239 (1134)
.||||..||++.+||.+.+|.+.-
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeee
Confidence 799999999999999999998753
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=49.32 E-value=5.7e+02 Score=31.14 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=21.4
Q ss_pred CCCCEEEEEeCC-----CeE-EEEccCCcEEEe
Q 001165 472 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 498 (1134)
Q Consensus 472 pdG~~LAsgg~d-----G~i-lwd~~sg~Wk~F 498 (1134)
-+|+..++||.+ ..+ .||..+++|...
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 378888888865 357 999999999764
No 447
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=47.67 E-value=3.4e+02 Score=34.44 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=24.7
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEe
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~ 237 (1134)
..|....||.|.+.+++++++..+.+++.
T Consensus 113 nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 113 NGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred CceEEEeeccCCceEEEEEcCceEEEEec
Confidence 45777889999999999999999888765
No 448
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=47.57 E-value=7.8e+02 Score=32.22 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=45.0
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc--cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..+..+..+.....++..+++|++..+......... ..+.........+.+.++..-++...++..+.+|.++...++
T Consensus 639 D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 639 DELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred CEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 345555555566778889999998887664332211 111111111122345544433345567788889988888776
Q ss_pred c
Q 001165 287 E 287 (1134)
Q Consensus 287 ~ 287 (1134)
+
T Consensus 719 e 719 (800)
T TIGR01063 719 E 719 (800)
T ss_pred H
Confidence 3
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=47.57 E-value=2.4e+02 Score=32.42 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=66.3
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCe------EEEEEeccC--Cccccc--eecccccC-------CCCCeEEEEECCCCCEE
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQ------LMSCSVSKK--GLKLAE--FIKIDKEL-------GSGDAVCASIAPEQQIL 271 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~------v~l~~~~~~--~~~~~~--~~~~~~~~-------~~~~~~~va~spdg~ll 271 (1134)
+.+..+.|.|+.+.+.+++.+|. ++..++... ...... ......-. ..-+.-.+++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55678899987778888888888 666555431 111000 00000000 01255678887888877
Q ss_pred EEeeeC------CeEEEEeccccccceeeeeeec-cCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 272 AVGTRR------GVVELYDLAESASLIRTVSLYD-WGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 272 AsG~~d------g~V~lwd~~~~~~~~~~l~l~~-~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
++-=.+ ..|.-++.+ +...+.+.+.. +.....-. . ..........|+++|||+.|.++-+.
T Consensus 100 is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~--~--~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGT--S--GRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCcc--c--cccCCCCeEEEEECCCCCEEEEEECc
Confidence 765445 566666654 32233332211 00000000 0 01145678999999999977766553
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=46.23 E-value=5.2e+02 Score=29.80 Aligned_cols=119 Identities=10% Similarity=0.096 Sum_probs=64.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..+.++++.|++.++++|. .|.+.. ..++. ++...... ..-...++++.+.|+|+.+++|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~g--------------g~tW~~~~---~~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPG--------------QTAWTPHQ---RNSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEE-EcCCC--------------CCeEEEee---CCCcccceeeeEcCCCCEEEEec
Confidence 4577899999998887765 454332 11211 11111111 01345789999999999887764
Q ss_pred CCCcEEEEecCCCeeEEEeccC---CCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEe
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h---~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~ 399 (1134)
.|.+.+=+..++......... ....+.++.+.|++ ..++.|. -..+....+++-|...
T Consensus 234 -~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~----~~~~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 234 -GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG----EIWAGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred -CCEEEEccCCCCCccccccCCccccccceeeEEEcCCC----CEEEEcCCCeEEEeCCCCCCCeEC
Confidence 455532245554433222111 11246777888776 5666554 3344555656655553
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.50 E-value=2.4e+02 Score=34.09 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccc---------c--ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESA---------S--LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW 325 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~---------~--~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f 325 (1134)
-.+..|..||.|..+|..+.+|.+.++=....+ . .-+++. -++.+++ ....=.+..++|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~-----i~~~~ft-----ss~~ltl~Qa~W 173 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP-----VAERFFT-----SSTSLTLKQAAW 173 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec-----ccceeec-----cCCceeeeeccc
Confidence 456788999999999999999987766532111 0 012222 1222222 112234778999
Q ss_pred CCCC---CEEEEEECCCcEEEEecCCCe
Q 001165 326 TPDN---SAFAVGWKSRGLTVWSVSGCR 350 (1134)
Q Consensus 326 SPDG---~~Lasg~~Dg~I~vWdv~~~~ 350 (1134)
.|+. ..|..-..|.+|||+|...-+
T Consensus 174 HP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 174 HPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred cCCccCCceEEEEecCcEEEEEecCCcc
Confidence 9976 577777888999999997654
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.81 E-value=96 Score=37.16 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=45.8
Q ss_pred EEEeecCeEEEEEcCCeEEEeec------CC----c-ceeEEEeecChhhHH---hhcceeEEEEcCCc---eEEEEEeC
Q 001165 25 IYFKVNNGLLLIASPCHIELWSS------SQ----H-KVRLGKYKRDSESVQ---REGENLQAVWSPDT---KLIAVVTS 87 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~------~~----~-~~~l~~~~r~~~sl~---~~G~~~~v~wSPDg---~~Lav~t~ 87 (1134)
|..|+.|...|.++.+.|.|-.. +. + .+.+|...-....+- .+=+..+++|-||+ ..|.+-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 44588899988888766655443 10 1 011111110000000 12246789999997 68999999
Q ss_pred CCEEEEEEEEec
Q 001165 88 SLYLHIFKVQIT 99 (1134)
Q Consensus 88 dg~l~lw~l~~~ 99 (1134)
|+++|+|++...
T Consensus 189 dnviRiy~lS~~ 200 (741)
T KOG4460|consen 189 DNVIRIYSLSEP 200 (741)
T ss_pred CcEEEEEecCCc
Confidence 999999999764
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=44.08 E-value=3e+02 Score=32.63 Aligned_cols=154 Identities=14% Similarity=0.031 Sum_probs=79.6
Q ss_pred CceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEE--EecCCCc----cEE-E---EecCCEEEeeecCCcEEeee-e
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA--IEEGSSE----RVL-I---FSFGKCCLNRGVSGMTYARQ-V 429 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~--~~~~h~~----~v~-~---~s~~k~l~S~s~d~ti~~w~-l 429 (1134)
+.|..+-..||+ +.-++.+|+...+.+..+..+-. ......+ .|. + ++=|.+++.++.||.+..|- +
T Consensus 221 ~~v~qllL~Pdg--~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 221 SDVSQLLLTPDG--KTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred cchHhhEECCCC--CEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 456677788887 22356778877777765533211 1111111 111 1 22277888999999999885 3
Q ss_pred eeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeE
Q 001165 430 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ 508 (1134)
Q Consensus 430 ~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~ 508 (1134)
..+... . ......+.-...+|..+.=..+.+-+++-.++|.. .+...+.+--+|....+ ...
T Consensus 299 r~~~~p----------~-----l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~--~~~ 361 (733)
T COG4590 299 RRDGQP----------H-----LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ--APQ 361 (733)
T ss_pred ecCCCC----------c-----ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc--Ccc
Confidence 322221 0 00011111122334344333445566667777777 44444443334433222 233
Q ss_pred EEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 509 SKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 509 v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+..+.-+++++++ .+...+++|..+
T Consensus 362 ~~~~Sp~~~~Ll~------e~~gki~~~~l~ 386 (733)
T COG4590 362 LVAMSPNQAYLLS------EDQGKIRLAQLE 386 (733)
T ss_pred eeeeCcccchhee------ecCCceEEEEec
Confidence 4566666777765 344668888765
No 454
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=43.99 E-value=1.2e+02 Score=36.30 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=42.7
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
..+||+|+..|.||+||--+ ..-++ ..++-..+|..|..+.+|+.+.+.+. ..+-+-|+.
T Consensus 573 sGyIa~as~kGDirLyDRig----------------~rAKt---alP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIG----------------KRAKT---ALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhc----------------chhhh---cCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 45899999999999999531 11111 12234567899999999998877776 477777764
Q ss_pred C
Q 001165 348 G 348 (1134)
Q Consensus 348 ~ 348 (1134)
.
T Consensus 633 i 633 (776)
T COG5167 633 I 633 (776)
T ss_pred c
Confidence 3
No 455
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=41.01 E-value=5.9e+02 Score=28.99 Aligned_cols=120 Identities=12% Similarity=0.171 Sum_probs=62.0
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..+..+..++||+++|++....-..-|+-.... .+ + ........|.+|.|+|||...+.+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--w~-----------~------~~r~~~~riq~~gf~~~~~lw~~~- 204 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--WQ-----------P------HNRNSSRRIQSMGFSPDGNLWMLA- 204 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---E-----------E------EE--SSS-EEEEEE-TTS-EEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCcc--ce-----------E------EccCccceehhceecCCCCEEEEe-
Confidence 456778889999999998766666667654111 00 0 011145789999999999887765
Q ss_pred CCCcEEEEec-CCCeeEEE--ecc-CCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEec
Q 001165 337 KSRGLTVWSV-SGCRLMST--IRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 337 ~Dg~I~vWdv-~~~~l~~t--l~~-h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~~ 400 (1134)
..|.|+.=+. ........ ... -..-.+.++++.+++ +.+++|. -..+-+.++++-|....
T Consensus 205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~----~~wa~gg~G~l~~S~DgGktW~~~~ 269 (302)
T PF14870_consen 205 RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN----EIWAVGGSGTLLVSTDGGKTWQKDR 269 (302)
T ss_dssp TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEEESSTTSS-EE-G
T ss_pred CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC----CEEEEeCCccEEEeCCCCccceECc
Confidence 6566665551 11111111 111 112246788898877 7777766 44556667777776643
No 456
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=40.76 E-value=7.9e+02 Score=30.37 Aligned_cols=195 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-----CEEEEEECCCcEE
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-----SAFAVGWKSRGLT 342 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-----~~Lasg~~Dg~I~ 342 (1134)
+..|.+++.++.|.-.|.+ +|+.+.+..........++.+......| ..++.+..|+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~---------------TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ 133 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAK---------------TGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLV 133 (527)
T ss_pred CCEEEEECCCCcEEEEECC---------------CCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEE
Q ss_pred EEecCCCeeEEEeccCCCCceeeeEEcC---CCCCCcceEEEcc--------eeEEEeCCCceEEEEecCCCcc------
Q 001165 343 VWSVSGCRLMSTIRQISLSSISSPIVKP---NQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGSSER------ 405 (1134)
Q Consensus 343 vWdv~~~~l~~tl~~h~~~~V~sv~~sp---~~~~~~~~l~sgs--------~i~~W~~~~~~l~~~~~~h~~~------ 405 (1134)
-.|..+++.+-.........-..+.-+| ++ ..++..+ .+...|.++++++-....-...
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Q ss_pred ----------------------------EEEEec--CCEEEeeec----CC-----------cEEeeeeeeCCCeEEEee
Q 001165 406 ----------------------------VLIFSF--GKCCLNRGV----SG-----------MTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 406 ----------------------------v~~~s~--~k~l~S~s~----d~-----------ti~~w~l~~~~~~l~l~~ 440 (1134)
...+++ +...+-.+. ++ ++..-|+.+|+.
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~------ 283 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI------ 283 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE------
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEc--CCCC---EEEEEeCCCeE-EEEccCCc
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAAS--KDGM---FLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~S--pdG~---~LAsgg~dG~i-lwd~~sg~ 494 (1134)
+|+.-..|...-....+-.-+-+. .||+ .++.++++|.+ +.|..+|+
T Consensus 284 -------~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 284 -------KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred -------EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
No 457
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=40.18 E-value=1.3e+02 Score=31.05 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=25.9
Q ss_pred cCeEEEEECCCC------CEEEEEECCCcEEEEecCCC
Q 001165 318 GPVSCIAWTPDN------SAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 318 g~V~~l~fSPDG------~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
+.|..++|||-| .+||+-..+|.+.||.-.+.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 479999999943 47888899999999987653
No 458
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.72 E-value=1.1e+02 Score=22.82 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCCCEEEEEE-CCCcEEEEecCCCeeEEEecc
Q 001165 327 PDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 327 PDG~~Lasg~-~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
|||++|.++. .+++|.++|..++..+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6888776654 578999999988877766654
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.03 E-value=1.1e+03 Score=31.62 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.6
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCee
Q 001165 326 TPDNSAFAVGWKSRGLTVWSVSGCRL 351 (1134)
Q Consensus 326 SPDG~~Lasg~~Dg~I~vWdv~~~~l 351 (1134)
+++|..++++..||.+..||+..+.+
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 89999999999999999999998876
No 460
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=38.63 E-value=7.5e+02 Score=29.49 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=26.5
Q ss_pred CCCEEEEEeCCCeE-EEEccCC----cEEEeCCccceeeeEEEEEEeeCCEEEEE
Q 001165 473 DGMFLAVAGLHGLI-LYDIRQK----KWRVFGDITQEQKIQSKGLLWLGKIIVVC 522 (1134)
Q Consensus 473 dG~~LAsgg~dG~i-lwd~~sg----~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~ 522 (1134)
+|..+.+-.--+.. .||+.++ .|.....-............|.++-+++|
T Consensus 296 ~~h~~l~ihlp~~tlcyD~at~~~~~qw~~l~tg~~~~~~R~~~~~f~~~q~~VG 350 (469)
T PF11134_consen 296 DGHEFLLIHLPRKTLCYDAATSQWGEQWFILKTGFYDEPYRAIDFMFFDNQITVG 350 (469)
T ss_pred CceEEEEEEcCCceEEEEcccCCcccceEEEeccccCCcceeeeeEEeCCeeEec
Confidence 44444444333344 8888877 44443322211113355677888777776
No 461
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.50 E-value=1.7e+02 Score=37.13 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=92.8
Q ss_pred cccHHHHHHHHHhcCcHHHH--HHH-HHHcC----CCCCchhHHHHHHHH---HhhcccccccccccccCCccccchhhh
Q 001165 768 QTILHCLLRHLLQRDKIEEA--LRL-AQLSA----EKPHFSHCLEWLLFT---VFDAEISRQNINKNQISIPKRAASFSL 837 (1134)
Q Consensus 768 ~~~L~~il~~ll~~~~~~~a--~~~-a~~~~----~l~~F~h~LE~lLh~---vLe~e~~~~~~~~~~~~i~~~~~~~~l 837 (1134)
++|++..-.-|..++.|.-+ +.+ -+.|+ .+.||.-+.+=|.+. +.+... .++.+-..|+| +-
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y---speydv~gi~d-----PF 249 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY---SPEYDVHGISD-----PF 249 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC---CCccCccCCCc-----hH
Confidence 55666555555555544321 211 23333 477888877766554 333222 12233335666 66
Q ss_pred HH-HHHHHHh--------cCchhHHHHHhhcccccccchHHhHhccCChHHHHH-----HHH--hcCcHHHHHhHH----
Q 001165 838 LE-KTCNFIR--------NFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFE-----ECF--QRRWYRTAACYI---- 897 (1134)
Q Consensus 838 l~-~v~~fi~--------~f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~-----~cl--~~~~l~taa~yL---- 897 (1134)
|+ +++++|+ ..+.+-+|..++|||||.. ..+|+. -||| .|| +.+-...|++.|
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss------kN~GnA-ILYE~V~TI~~I~~~~~LrvlainiLgkFL 322 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS------KNAGNA-ILYECVRTIMDIRSNSGLRVLAINILGKFL 322 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc------ccchhH-HHHHHHHHHHhccCCchHHHHHHHHHHHHh
Confidence 65 4445542 2335799999999999987 455543 2332 122 233345555554
Q ss_pred -------------------------------hhhhhccCchhh-HHHHHHHHHHHhccchH-hHHHHHHHhhhccccccc
Q 001165 898 -------------------------------LVIAKLEGPAVS-QYSALRLLQATLDECLY-ELAGELVRFLLRSGREYE 944 (1134)
Q Consensus 898 -------------------------------ivl~n~e~~~~~-~~~a~~Ll~~al~~~~w-~l~~eL~RFl~~~~~~~~ 944 (1134)
-|++=++.+|++ +..|++|+-+.++..+. .|.+||+-||...|++..
T Consensus 323 ~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k 402 (866)
T KOG1062|consen 323 LNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFK 402 (866)
T ss_pred cCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHH
Confidence 123334444444 67788888888877554 699999999999876543
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=36.46 E-value=2e+02 Score=35.88 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=17.0
Q ss_pred ec-CCEEEeeecCCcEEeeeee
Q 001165 410 SF-GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 410 s~-~k~l~S~s~d~ti~~w~l~ 430 (1134)
+| +.++++++.||++++++..
T Consensus 23 hp~~~s~v~~~~d~si~lfn~~ 44 (1636)
T KOG3616|consen 23 HPGGQSFVLAHQDGSIILFNFI 44 (1636)
T ss_pred cCCCceEEEEecCCcEEEEeec
Confidence 35 7788999999999988754
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=32.77 E-value=7.8e+02 Score=31.52 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=50.9
Q ss_pred cccEEEEEEc--CCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC------CEEEEeeeCCe
Q 001165 208 SSAIIWLELC--LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ------QILAVGTRRGV 279 (1134)
Q Consensus 208 ~~~V~~i~fs--p~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg------~llAsG~~dg~ 279 (1134)
...+.++++. ...+++|++.+...|.++.......+... .. ...+...|.||+|-++. ..++.++-.|.
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~--~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH--VP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc--cc-ccccccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 3467888888 77888998888888888776542211110 00 00123567889887754 27888888999
Q ss_pred EEEEecc
Q 001165 280 VELYDLA 286 (1134)
Q Consensus 280 V~lwd~~ 286 (1134)
+.+|++.
T Consensus 240 v~~~~I~ 246 (717)
T PF08728_consen 240 VWTFKIK 246 (717)
T ss_pred EEEEEEE
Confidence 9998884
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.29 E-value=3.3e+02 Score=36.67 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=88.2
Q ss_pred CCeEEEeecCCcceeEEEeecChhhHHhhcceeEE--------EEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCC
Q 001165 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQA--------VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (1134)
Q Consensus 39 ~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v--------~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~ 110 (1134)
|+.+.+|+.++.+ ....+..... .+..| .|-|+=+++.+.++--.|.|+-+.......-..
T Consensus 98 Dn~L~lWny~~~~-e~~~~d~~sh------tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~---- 166 (1311)
T KOG1900|consen 98 DNNLFLWNYESDN-ELAEYDGLSH------TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS---- 166 (1311)
T ss_pred CCeEEEEEcCCCC-ccccccchhh------hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc----
Confidence 6789999998532 2222211111 12222 134445566655555678888887643211100
Q ss_pred CCcceeeEEEeeceeeccccccceEEEeee-CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCc
Q 001165 111 SGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (1134)
Q Consensus 111 ~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~-d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 189 (1134)
....+ .+ +......|.|+.. ++++|+.++.||.++-+....+..-..+ .+...+++.. .
T Consensus 167 --~f~~~------~~--i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~----rc~Kiclt~s------~ 226 (1311)
T KOG1900|consen 167 --IFNTS------FK--ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGS----RCRKICLTKS------V 226 (1311)
T ss_pred --ccccc------ee--eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhc----ccccccCchh------H
Confidence 00011 11 2222356788874 5677888989998877755543211110 0111111100 0
Q ss_pred cccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEecc
Q 001165 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK 239 (1134)
Q Consensus 190 l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~ 239 (1134)
+++... . +.. ....++.+|..|+....-+.+.+-+..|++..|++..
T Consensus 227 ls~lvP-s-~~~-~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 227 LSSLVP-S-LLS-VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHHhhh-h-hhc-CCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 000000 0 111 1124677999999999999999999999999999865
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.23 E-value=3.4e+02 Score=30.53 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=55.2
Q ss_pred CCeEEEEccCCcEEEeCCccceeeeEEEEEEee-CCEE-EEEEEecCC-CeeEEEEEeCCCCCCcceeE--EEecCCccE
Q 001165 483 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKII-VVCNYIDSS-NTYELLFYPRYHLDQSSLLC--RKSLLAKPI 557 (1134)
Q Consensus 483 dG~ilwd~~sg~Wk~F~~~~~e~~~~v~gl~W~-~~~l-v~~~~~~~~-~~~eLrly~~~~ld~~~~~~--~~~l~~~~~ 557 (1134)
.|..+||..+..|..+++. -...|..+.|. ++.+ ++|.....+ ....+..|+.+.-.=..+.. .-.+|.++.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 3444999999999999875 23468899997 5544 555555545 56778888774100000111 013556554
Q ss_pred EEEe---cCCEEEE--EEcCCeEEEEEEE
Q 001165 558 VMDV---YEDYILV--TYRPFDVHIFHVK 581 (1134)
Q Consensus 558 ~l~~---~~d~llv--~~~d~~i~l~~~~ 581 (1134)
.+.. ..+.+.+ -..++...|++|.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 4443 3334443 2256666677663
No 466
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=30.31 E-value=8.2e+02 Score=29.62 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
.....++|.|||+++++-...|.|++++-.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCC
Confidence 556789999999988875557999998754
No 467
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=28.79 E-value=1.8e+02 Score=23.92 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=46.5
Q ss_pred HHHHhcCcHHHHHhHHhhhhhccCchhhHHHHHHHHHHHhccchHhHHHHHHHhhhccccc
Q 001165 882 EECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGRE 942 (1134)
Q Consensus 882 ~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~~~~~~ 942 (1134)
...++.|+++.|...+--+....+. .......|.+.....++|+-|.+..+=+..++|.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3467899999999999877766655 4666778888889999999999998877777764
No 468
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=28.31 E-value=8.6e+02 Score=28.85 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=39.5
Q ss_pred EEEEECCCCCEEEEEECCC-cEEEEecCC--CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCce
Q 001165 321 SCIAWTPDNSAFAVGWKSR-GLTVWSVSG--CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 394 (1134)
Q Consensus 321 ~~l~fSPDG~~Lasg~~Dg-~I~vWdv~~--~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~ 394 (1134)
..|.|+|||++.++.++.+ --..||..+ ++.+ .+... ..+...++. ...+..+.|. .-..|++.+++
T Consensus 180 ~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~-r~~~a-----~~~~~d~p~-~~~~i~s~G~RN~qGl~w~P~tg~ 252 (399)
T COG2133 180 GRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVL-RIDRA-----GIIPADNPF-PNSEIWSYGHRNPQGLAWHPVTGA 252 (399)
T ss_pred ccEEECCCCcEEEEeCCCCCcccccCcccccccee-eeccC-----cccccCCCC-CCcceEEeccCCccceeecCCCCc
Confidence 5799999998777766542 223343322 1111 11110 011111211 1124566665 46789999999
Q ss_pred EEEEecCC
Q 001165 395 LYAIEEGS 402 (1134)
Q Consensus 395 l~~~~~~h 402 (1134)
||.+..+.
T Consensus 253 Lw~~e~g~ 260 (399)
T COG2133 253 LWTTEHGP 260 (399)
T ss_pred EEEEecCC
Confidence 98886553
No 469
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=26.72 E-value=76 Score=28.17 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHHhccCCChHHHhhhcCccceecccHHHHHHHH---hhhcc
Q 001165 987 SVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELI---GQKLQ 1048 (1134)
Q Consensus 987 ~~~~~l~~~a~~l~~~~~l~~l~~f~~~~~f~~~~~l~~e~~~~~~~~~~~~~l~~~---~~~~~ 1048 (1134)
....+++..||.||...+-..|.+..++. +.+.--||+|+.||-.+ |+||.
T Consensus 3 ~~~~m~ee~Ar~lL~e~E~~tm~yyl~eY-----------~~~~~tVealV~aL~elLnt~~K~s 56 (81)
T cd07357 3 QTRSMVEEQARHLLSENERATLSYYLDEY-----------RSGHISVDALVMALFELLNTHEKFS 56 (81)
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHHHHHH-----------HcCCCCHHHHHHHHHHHhccHHHHH
Confidence 35789999999999999888877655443 34445699999998766 55543
No 470
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.63 E-value=4.5e+02 Score=29.61 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=34.6
Q ss_pred CCcCeEEEEECCCCCEEEEEE------CCCcEEEEecCCCeeEEEeccCC----CCceeeeEEc
Q 001165 316 DTGPVSCIAWTPDNSAFAVGW------KSRGLTVWSVSGCRLMSTIRQIS----LSSISSPIVK 369 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~------~Dg~I~vWdv~~~~l~~tl~~h~----~~~V~sv~~s 369 (1134)
-.|.|++|.|..+.+.+++|. ....+..||..+.. ..++.+.. ..+|+.+.+.
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEEEee
Confidence 468899999997777888775 34578899987654 43444321 1345555553
No 471
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=26.10 E-value=1.6e+03 Score=29.42 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=39.0
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc--cceecccccCC-CCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--AEFIKIDKELG-SGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~--~~~~~~~~~~~-~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
..|.++..-.+.+.++.++..|.+............ ..+....+... .+.+..+....+...++..+.+|.+..++.
T Consensus 689 E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~ 768 (800)
T TIGR01063 689 DFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSV 768 (800)
T ss_pred CEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeH
Confidence 345555444445578889999988877665433211 11221111111 123333333333344555577777766665
Q ss_pred c
Q 001165 286 A 286 (1134)
Q Consensus 286 ~ 286 (1134)
+
T Consensus 769 ~ 769 (800)
T TIGR01063 769 Q 769 (800)
T ss_pred h
Confidence 5
No 472
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=25.75 E-value=1e+03 Score=27.08 Aligned_cols=249 Identities=15% Similarity=0.123 Sum_probs=97.9
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
.+..+.+|.|.-+.+.++++ +.|.+ +-+.+....++........ .......+|+|+.+ ...++| ..|. |+...
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~-~~~~~l~~I~f~~~-~g~ivG-~~g~--ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDN-PFDYHLNSISFDGN-EGWIVG-EPGL--LLHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S------EEEEEEEETT-EEEEEE-ETTE--EEEES
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCc-cceeeEEEEEecCC-ceEEEc-CCce--EEEec
Confidence 35588999999777777775 45654 2233343333322211100 00123557777654 345554 4553 33334
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+.+.....+.+.. .-.+....+....++...+++ ..|.| .-+..+++--..+.......+..+
T Consensus 88 DgG~tW~~v~l~~---------------~lpgs~~~i~~l~~~~~~l~~-~~G~i-y~T~DgG~tW~~~~~~~~gs~~~~ 150 (302)
T PF14870_consen 88 DGGKTWERVPLSS---------------KLPGSPFGITALGDGSAELAG-DRGAI-YRTTDGGKTWQAVVSETSGSINDI 150 (302)
T ss_dssp STTSS-EE----T---------------T-SS-EEEEEEEETTEEEEEE-TT--E-EEESSTTSSEEEEE-S----EEEE
T ss_pred CCCCCcEEeecCC---------------CCCCCeeEEEEcCCCcEEEEc-CCCcE-EEeCCCCCCeeEcccCCcceeEeE
Confidence 3333322222110 012333344444555444443 33443 233444443333322224567788
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe-cCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecC
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 442 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~-~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~ 442 (1134)
..++++ ..++.+. -.+.|+.... .|... .....+|-.+.| +..-.+|-+..+.. +.... .
T Consensus 151 ~r~~dG----~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf---------~~~~~lw~~~~Gg~-~~~s~-~ 214 (302)
T PF14870_consen 151 TRSSDG----RYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGF---------SPDGNLWMLARGGQ-IQFSD-D 214 (302)
T ss_dssp EE-TTS-----EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE----------TTS-EEEEETTTE-EEEEE--
T ss_pred EECCCC----cEEEEECcccEEEEecCCCc-cceEEccCccceehhcee---------cCCCCEEEEeCCcE-EEEcc-C
Confidence 888888 7776554 3456765431 12221 122344422222 11223344333222 22211 0
Q ss_pred CCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCc-EEEe
Q 001165 443 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRVF 498 (1134)
Q Consensus 443 ~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~-Wk~F 498 (1134)
....-.|.....|. ....+.+..+++.+++...|+| ..|.++.+...|+ |+.-
T Consensus 215 ~~~~~~w~~~~~~~--~~~~~~~ld~a~~~~~~~wa~g-g~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 215 PDDGETWSEPIIPI--KTNGYGILDLAYRPPNEIWAVG-GSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp TTEEEEE---B-TT--SS--S-EEEEEESSSS-EEEEE-STT-EEEESSTTSS-EE-
T ss_pred CCCccccccccCCc--ccCceeeEEEEecCCCCEEEEe-CCccEEEeCCCCccceEC
Confidence 01111243322222 1233458899999888777755 4667778887664 7653
No 473
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=23.13 E-value=1.9e+02 Score=20.08 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=17.6
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
...++++++|+++++=+.+..|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777888877776667777654
No 474
>PRK05560 DNA gyrase subunit A; Validated
Probab=22.83 E-value=1.8e+03 Score=28.93 Aligned_cols=223 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEE
Q 001165 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYS 156 (1134)
Q Consensus 77 PDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~ 156 (1134)
++-..+++.|.+|+++--.+..- ......+.....+.+..+..+. -...+...+.+++.|+.|.++.
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~------~~~~~~~~g~~~~klKe~D~l~-------~~~~~~t~d~LllfTs~Grv~~ 562 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEY------RAQRRGGKGVSGAKTKEDDFVE-------HLFVASTHDTLLFFTNRGRVYR 562 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhh------hhhcccCCCccccccCCCCeeE-------EEEEecCCCeEEEEecCCeEEE
Q ss_pred EecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEc--CCCCeEEEEEcCCeEEE
Q 001165 157 ISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC--LPMRLLFVLYSNGQLMS 234 (1134)
Q Consensus 157 ~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs--p~~~~la~~~sDG~v~l 234 (1134)
+.+..--.......+.+.. .-..+.....-|..+.+. ++...+++++.+|.+.-
T Consensus 563 l~v~~iP~~~~~~~G~~i~------------------------~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKR 618 (805)
T PRK05560 563 LKVYEIPEASRTARGRPIV------------------------NLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKK 618 (805)
T ss_pred EEhhhCcCCCcCCCCeEHH------------------------HhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEE
Q ss_pred EEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccC
Q 001165 235 CSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSM 314 (1134)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~ 314 (1134)
............+.........+.+..+........++.-+..|.+..+.+.+-....+.- .|.....+..
T Consensus 619 i~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~------~Gv~~i~L~~--- 689 (805)
T PRK05560 619 TSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA------RGVRGIKLRE--- 689 (805)
T ss_pred EEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc------CCcccccCCC---
Q ss_pred CCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 315 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 315 ~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
...-|..+.+.+++..++..+..|.++..++
T Consensus 690 -~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l 720 (805)
T PRK05560 690 -GDEVVSMDVVREDSQEILTVTENGYGKRTPV 720 (805)
T ss_pred -CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEH
No 475
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=22.27 E-value=3.8e+02 Score=32.30 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=67.8
Q ss_pred CchhHHHHHHHHHhhcccccccccccccCCccccchhhhHHHHHHHHhcCchhHHHHHhhcccccccchHHhHhccCChH
Q 001165 799 HFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRST 878 (1134)
Q Consensus 799 ~F~h~LE~lLh~vLe~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~f~~~l~ivv~caRKtE~~~W~~LF~~~g~P~ 878 (1134)
.|..-+.-||.-.+=+-. .+|| ++..-+.+||++.|.+. ....+=..++
T Consensus 156 ~y~~L~~~Ll~p~lWe~~---------gniP------alvrLL~a~i~k~~~~i---------~~~~~l~~iL------- 204 (435)
T PF03378_consen 156 AYKQLFPPLLSPALWERR---------GNIP------ALVRLLQAYIKKDPSFI---------VANNQLEPIL------- 204 (435)
T ss_dssp TTGGGHHHHTSGGGGGST---------TTHH------HHHHHHHHHHHHHGGG-------------S-CHHHH-------
T ss_pred HHHHHHHHHcCcchhccC---------CCcC------cHHHHHHHHHHhCchhh---------cchhhHHHHH-------
Confidence 667777777766555322 1366 57777777787776654 1112222333
Q ss_pred HHHHHHHhcCcHHHHHhHHh--hhhhccCchh---hHHHHHHHHHHHhccchHhHHHHHHHhhhcc
Q 001165 879 ELFEECFQRRWYRTAACYIL--VIAKLEGPAV---SQYSALRLLQATLDECLYELAGELVRFLLRS 939 (1134)
Q Consensus 879 ~Lf~~cl~~~~l~taa~yLi--vl~n~e~~~~---~~~~a~~Ll~~al~~~~w~l~~eL~RFl~~~ 939 (1134)
..|++||..+..+.-|=+|+ |+.++..+.. -.+.+.-|+...-..+-....+.+++|+..+
T Consensus 205 gvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 205 GVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 34999999999888888875 5666666542 3556666666666678888999999998754
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=1.1e+03 Score=31.57 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=32.2
Q ss_pred eeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEe
Q 001165 457 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 498 (1134)
Q Consensus 457 ~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F 498 (1134)
.+..+++++.....+++|..++++-.||.. .||+.++.-+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~ 271 (993)
T KOG1983|consen 229 KYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQIA 271 (993)
T ss_pred ccchhhcccccccCccCCceEEEEEecCCEEeeecCCCceeec
Confidence 344555555555559999999999999999 999999865443
No 477
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.82 E-value=1.8e+03 Score=28.55 Aligned_cols=78 Identities=9% Similarity=-0.047 Sum_probs=43.1
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccc-ce-ecc-cccCCCCCeEEE-EECCCCCEEEEeeeCCeEEEEe
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA-EF-IKI-DKELGSGDAVCA-SIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~v-a~spdg~llAsG~~dg~V~lwd 284 (1134)
..+..+..+...+.++..+++|+++-+....-..... .+ +.. ......+.+..+ .+++ .+.+...+..|.++.-.
T Consensus 525 D~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~GR~aGgpV~~~L~L~~gE~Iv~~~~v~~-~~~lLlaT~~GyGKrt~ 603 (735)
T TIGR01062 525 DSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQGEPLTGKLLLPIGATITNILMYSP-NQLLLMASDAGYGFLCN 603 (735)
T ss_pred CeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCcCccCCceeEeeecCCCCCEEEEEEEecC-CcEEEEEEcCCcEEEEE
Confidence 4455555566677888899999988876643221100 01 110 000122344433 3444 34566778888888877
Q ss_pred ccc
Q 001165 285 LAE 287 (1134)
Q Consensus 285 ~~~ 287 (1134)
+++
T Consensus 604 lse 606 (735)
T TIGR01062 604 FND 606 (735)
T ss_pred hHh
Confidence 764
No 478
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=21.55 E-value=2.1e+02 Score=23.63 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=42.7
Q ss_pred HHhcCcHHHHHhHHhhhhhccCchhhHHHHHHHHHHHhccchHhHHHHHHHhhhccccc
Q 001165 884 CFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGRE 942 (1134)
Q Consensus 884 cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~~~~~~ 942 (1134)
.++.|+++.|..++-=+...++.. ....+.|.+..+..|+++-|.+++.=+...+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 367899999999987776666653 455667888899999999999998766665554
No 479
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.50 E-value=5.5e+02 Score=24.81 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=47.4
Q ss_pred hhHHHHHHHHhcC---chhHHHHHhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHH------hHHhhhhhccCc
Q 001165 836 SLLEKTCNFIRNF---PEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAA------CYILVIAKLEGP 906 (1134)
Q Consensus 836 ~ll~~v~~fi~~f---~~~l~ivv~caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa------~yLivl~n~e~~ 906 (1134)
.++..+++.-.+. +...+++..++.+...+.|...++++ .|++-++.+|.-+-.. ..+--++++...
T Consensus 22 ~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL----~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 22 KLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKAL----TLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHH----HHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHH----HHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 6777777654333 23344444444455999999999984 6788888888764333 334444555432
Q ss_pred h-----h---hHHHHHHHHHHHhc
Q 001165 907 A-----V---SQYSALRLLQATLD 922 (1134)
Q Consensus 907 ~-----~---~~~~a~~Ll~~al~ 922 (1134)
+ . .|+.|.+|++...|
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred CCCCccHHHHHHHHHHHHHHHhCC
Confidence 1 1 35666666655544
No 480
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=21.43 E-value=4.9e+02 Score=29.89 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=40.3
Q ss_pred cccchHHhHhccC---Ch---HHHHHHHHhcCcHHHHHhHHhhhhhccCchhhHHHHHHHHHHHhccchHhHHHHHH
Q 001165 863 DGRHWADLFSAAG---RS---TELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELV 933 (1134)
Q Consensus 863 E~~~W~~LF~~~g---~P---~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~ 933 (1134)
+.+.|..|..-.+ +| .-+++.|++.|+-+.|..|+-=+.. -+-.++-+..|+|.-|.+.+
T Consensus 220 ~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-----------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 220 ENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-----------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred hcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-----------HHHHHHHHHCCCHHHHHHHH
Confidence 4577888877654 55 4789999999999999999875432 11122335556666665554
No 481
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=20.38 E-value=19 Score=42.56 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=71.0
Q ss_pred ccEEEEEEcCCCCeEEE-EEcCCeEEEEEeccCCccccceecccccCCCCCe-EEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFV-LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDA-VCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~-~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
+...+|+++.++..+++ +-..|.+++|++++....+.+.- + ... .-..|++-+..++.|...|.++||+..
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g------g-~~s~sll~wsKg~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG------G-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc------C-cchHHHHhhccCCccccccccccceEEEecc
Confidence 33455667777765554 44668899999876443332210 0 111 125788999999999999999999977
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCC-CCcCeEEEEECCCCCEEEEEECCCcEEEEecCC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMD-DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~-h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
. ...+ ...+ |...+++++|.+.++.+ .++.|..+.+=.-.|
T Consensus 148 t---------------sR~i-----iv~Gkh~RRgtq~av~lEd~vi-l~dcd~~L~v~~qeg 189 (615)
T KOG2247|consen 148 T---------------SRRI-----IVMGKHQRRGTQIAVTLEDYVI-LCDCDNTLSVTTQEG 189 (615)
T ss_pred c---------------hhhh-----hhhcccccceeEEEecccceee-ecCcHHHHHHhhhcc
Confidence 1 1111 1112 88899999999987544 556666665544433
No 482
>PRK10115 protease 2; Provisional
Probab=20.36 E-value=1.9e+03 Score=28.15 Aligned_cols=70 Identities=4% Similarity=-0.100 Sum_probs=40.4
Q ss_pred ccEEEEEEcCCCCeEEEEEcCC-e----EEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC------
Q 001165 209 SAIIWLELCLPMRLLFVLYSNG-Q----LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR------ 277 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG-~----v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d------ 277 (1134)
-.+..+.+||+++.++.+.+.+ . +++.++.++... ...+. + .. ..++|++|++.|.....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~-----~-~~-~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLD-----N-VE-PSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Ccccc-----C-cc-eEEEEeeCCCEEEEEEecCCCCCC
Confidence 4566788999999888875543 2 444444322100 01111 1 11 458999999877766543
Q ss_pred CeEEEEecc
Q 001165 278 GVVELYDLA 286 (1134)
Q Consensus 278 g~V~lwd~~ 286 (1134)
..|..+++.
T Consensus 199 ~~v~~h~lg 207 (686)
T PRK10115 199 YQVWRHTIG 207 (686)
T ss_pred CEEEEEECC
Confidence 246666666
Done!