Query 001165
Match_columns 1134
No_of_seqs 564 out of 3958
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 2.7E-38 9.2E-43 388.5 57.2 474 20-579 15-577 (577)
2 1nr0_A Actin interacting prote 100.0 4.8E-39 1.6E-43 400.1 50.9 458 23-581 22-566 (611)
3 1nr0_A Actin interacting prote 100.0 5.7E-37 2E-41 381.3 52.7 453 23-580 63-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 5.6E-36 1.9E-40 367.9 50.7 441 20-537 56-577 (577)
5 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-34 1.9E-38 365.1 56.6 648 23-938 17-709 (814)
6 1pgu_A Actin interacting prote 100.0 3.4E-33 1.2E-37 344.7 54.1 464 23-581 22-613 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-34 8.1E-39 386.3 46.1 498 20-580 614-1247(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-32 1.3E-36 351.9 45.3 447 23-538 21-659 (902)
9 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-31 9.7E-36 343.6 41.3 412 23-496 62-668 (902)
10 3ow8_A WD repeat-containing pr 100.0 7E-31 2.4E-35 299.6 36.8 277 130-490 30-319 (321)
11 4gqb_B Methylosome protein 50; 100.0 5.3E-31 1.8E-35 303.8 34.5 240 208-493 82-332 (344)
12 4g56_B MGC81050 protein; prote 100.0 2.2E-31 7.4E-36 308.5 31.0 242 206-493 92-344 (357)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-30 1.9E-34 294.9 38.4 309 69-494 18-337 (345)
14 1vyh_C Platelet-activating fac 100.0 4.6E-30 1.6E-34 303.1 37.9 280 129-490 105-409 (410)
15 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-28 4.9E-33 330.2 53.7 419 66-581 614-1115(1249)
16 3ow8_A WD repeat-containing pr 100.0 1.4E-29 5E-34 288.7 36.3 277 66-429 31-319 (321)
17 1pgu_A Actin interacting prote 100.0 9.2E-29 3.1E-33 305.0 46.2 285 66-432 17-329 (615)
18 1r5m_A SIR4-interacting protei 100.0 1.2E-29 4E-34 297.0 36.2 374 41-491 26-424 (425)
19 2pm9_A Protein WEB1, protein t 100.0 8.9E-31 3E-35 306.9 25.5 351 68-493 13-415 (416)
20 3frx_A Guanine nucleotide-bind 100.0 5.8E-29 2E-33 283.2 39.6 291 66-493 16-318 (319)
21 1got_B GT-beta; complex (GTP-b 100.0 3E-29 1E-33 288.0 37.0 279 128-489 51-340 (340)
22 1vyh_C Platelet-activating fac 100.0 6.9E-30 2.4E-34 301.5 32.4 277 203-538 103-409 (410)
23 2ynn_A Coatomer subunit beta'; 100.0 3E-29 1E-33 283.3 36.1 274 136-492 19-302 (304)
24 1gxr_A ESG1, transducin-like e 100.0 4.4E-29 1.5E-33 282.8 36.8 320 68-491 10-336 (337)
25 2pbi_B Guanine nucleotide-bind 100.0 4.4E-29 1.5E-33 288.7 36.3 282 128-489 60-354 (354)
26 3vl1_A 26S proteasome regulato 100.0 1E-29 3.5E-34 298.8 31.2 328 70-492 59-419 (420)
27 2hes_X YDR267CP; beta-propelle 100.0 8.8E-29 3E-33 283.1 37.6 296 129-492 11-328 (330)
28 3iz6_a 40S ribosomal protein R 100.0 8.4E-30 2.9E-34 297.5 29.3 303 66-494 65-377 (380)
29 1got_B GT-beta; complex (GTP-b 100.0 6.8E-29 2.3E-33 285.1 36.1 280 66-428 54-340 (340)
30 2ynn_A Coatomer subunit beta'; 100.0 8.7E-29 3E-33 279.6 33.1 243 203-495 8-262 (304)
31 2hes_X YDR267CP; beta-propelle 100.0 3E-28 1E-32 278.6 36.3 297 204-539 10-327 (330)
32 2pbi_B Guanine nucleotide-bind 100.0 4.7E-28 1.6E-32 280.0 36.5 283 66-428 63-354 (354)
33 4gqb_B Methylosome protein 50; 100.0 3.9E-28 1.3E-32 279.8 35.3 284 206-539 28-330 (344)
34 4aow_A Guanine nucleotide-bind 100.0 1.4E-27 4.9E-32 271.3 39.3 295 66-494 37-339 (340)
35 4ery_A WD repeat-containing pr 100.0 1.7E-27 5.8E-32 269.0 39.5 277 130-491 21-311 (312)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-27 4.2E-32 275.3 38.0 301 204-539 11-334 (345)
37 1erj_A Transcriptional repress 100.0 1.2E-27 4.2E-32 280.4 37.6 323 37-431 37-389 (393)
38 4g56_B MGC81050 protein; prote 100.0 3.3E-28 1.1E-32 281.7 29.6 284 205-539 39-342 (357)
39 3frx_A Guanine nucleotide-bind 100.0 4.9E-27 1.7E-31 267.2 38.2 288 203-538 12-315 (319)
40 4h5i_A Guanine nucleotide-exch 100.0 8.9E-28 3E-32 279.1 32.3 192 257-493 134-344 (365)
41 2xzm_R RACK1; ribosome, transl 100.0 7.1E-27 2.4E-31 268.4 37.0 299 128-493 17-341 (343)
42 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-27 3.9E-32 285.3 30.8 250 207-482 84-350 (588)
43 2pm9_A Protein WEB1, protein t 100.0 2.6E-28 9.1E-33 285.8 24.5 333 24-431 17-414 (416)
44 2pm7_B Protein transport prote 100.0 7.3E-27 2.5E-31 262.9 33.6 259 204-499 5-293 (297)
45 1k8k_C P40, ARP2/3 complex 41 100.0 5.9E-27 2E-31 269.7 33.7 337 67-493 8-362 (372)
46 1r5m_A SIR4-interacting protei 100.0 6E-27 2.1E-31 273.9 34.0 330 23-429 49-423 (425)
47 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-26 8.6E-31 273.3 38.5 307 74-492 124-442 (445)
48 3ei3_B DNA damage-binding prot 100.0 7.3E-27 2.5E-31 271.6 32.0 301 66-492 72-382 (383)
49 3dm0_A Maltose-binding peripla 100.0 2.1E-26 7.3E-31 290.4 38.1 304 66-491 381-692 (694)
50 1erj_A Transcriptional repress 100.0 3.5E-26 1.2E-30 268.1 37.1 235 207-492 122-389 (393)
51 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-27 3.6E-32 291.2 24.8 328 67-493 133-518 (524)
52 3gre_A Serine/threonine-protei 100.0 6.1E-27 2.1E-31 277.3 30.6 344 22-489 30-437 (437)
53 3bg1_A Protein SEC13 homolog; 100.0 4.1E-27 1.4E-31 267.5 27.7 258 203-500 8-302 (316)
54 1gxr_A ESG1, transducin-like e 100.0 5.3E-26 1.8E-30 257.3 36.5 276 205-538 48-335 (337)
55 2xzm_R RACK1; ribosome, transl 100.0 8.6E-26 2.9E-30 259.4 38.4 290 203-538 16-338 (343)
56 4ery_A WD repeat-containing pr 100.0 7.4E-26 2.5E-30 255.5 36.2 279 203-538 18-310 (312)
57 3vl1_A 26S proteasome regulato 100.0 1.5E-26 5E-31 271.9 31.6 313 211-581 59-418 (420)
58 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-26 1.9E-30 290.8 39.5 386 66-579 12-420 (814)
59 4e54_B DNA damage-binding prot 100.0 1.8E-27 6E-32 282.9 23.6 305 68-495 120-433 (435)
60 3iz6_a 40S ribosomal protein R 100.0 4E-27 1.4E-31 274.8 25.5 296 203-539 61-374 (380)
61 2j04_B YDR362CP, TAU91; beta p 100.0 2.8E-27 9.7E-32 287.4 24.4 319 29-429 171-515 (524)
62 3v7d_B Cell division control p 99.9 3.3E-25 1.1E-29 264.6 41.1 324 135-538 125-463 (464)
63 4aow_A Guanine nucleotide-bind 99.9 1.1E-25 3.7E-30 255.7 33.4 303 2-393 19-338 (340)
64 3zwl_B Eukaryotic translation 99.9 4.3E-25 1.5E-29 253.0 37.5 289 129-494 29-348 (369)
65 1k8k_C P40, ARP2/3 complex 41 99.9 2.6E-25 8.9E-30 255.9 34.1 247 206-498 6-282 (372)
66 3zwl_B Eukaryotic translation 99.9 8E-25 2.7E-29 250.7 37.5 282 66-432 31-347 (369)
67 1sq9_A Antiviral protein SKI8; 99.9 1.6E-25 5.4E-30 260.7 31.9 316 128-494 12-397 (397)
68 3dwl_C Actin-related protein 2 99.9 2.3E-26 7.8E-31 266.4 22.9 247 207-497 10-286 (377)
69 3k26_A Polycomb protein EED; W 99.9 1.7E-25 5.8E-30 256.3 29.4 242 206-492 67-366 (366)
70 3dwl_C Actin-related protein 2 99.9 3.6E-26 1.2E-30 264.7 23.7 257 67-391 11-280 (377)
71 3k26_A Polycomb protein EED; W 99.9 1.8E-25 6.3E-30 256.0 28.8 296 204-538 14-364 (366)
72 3dm0_A Maltose-binding peripla 99.9 1.2E-24 4.2E-29 274.2 39.0 288 203-538 377-691 (694)
73 3f3f_A Nucleoporin SEH1; struc 99.9 5.7E-25 1.9E-29 248.7 32.3 283 203-498 6-344 (351)
74 4gga_A P55CDC, cell division c 99.9 1E-24 3.5E-29 257.7 35.6 281 23-394 109-397 (420)
75 3v7d_B Cell division control p 99.9 1.5E-24 5E-29 259.0 36.8 305 74-486 127-456 (464)
76 3i2n_A WD repeat-containing pr 99.9 3.9E-25 1.3E-29 252.7 30.3 295 23-395 22-356 (357)
77 4e54_B DNA damage-binding prot 99.9 2.2E-25 7.6E-30 264.8 29.1 289 24-395 124-433 (435)
78 3i2n_A WD repeat-containing pr 99.9 6.8E-25 2.3E-29 250.7 32.1 309 66-493 17-354 (357)
79 3odt_A Protein DOA1; ubiquitin 99.9 1.6E-24 5.6E-29 242.6 34.5 278 20-396 17-300 (313)
80 3dw8_B Serine/threonine-protei 99.9 6E-25 2.1E-29 260.1 32.6 264 209-490 94-444 (447)
81 4aez_A CDC20, WD repeat-contai 99.9 2E-24 6.9E-29 253.4 36.0 276 135-494 96-382 (401)
82 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.4E-23 4.6E-28 249.7 43.4 309 135-539 122-441 (445)
83 4ggc_A P55CDC, cell division c 99.9 4.4E-24 1.5E-28 240.0 37.0 279 23-392 29-315 (318)
84 3odt_A Protein DOA1; ubiquitin 99.9 3.4E-24 1.2E-28 240.1 35.9 276 130-496 16-300 (313)
85 4a11_B DNA excision repair pro 99.9 1.1E-24 3.9E-29 253.4 33.0 238 206-494 97-367 (408)
86 3ei3_B DNA damage-binding prot 99.9 1.6E-24 5.3E-29 251.9 32.1 295 23-392 77-382 (383)
87 4h5i_A Guanine nucleotide-exch 99.9 3.3E-25 1.1E-29 257.3 26.1 289 22-390 17-341 (365)
88 1sq9_A Antiviral protein SKI8; 99.9 9.5E-24 3.2E-28 245.7 37.4 295 66-432 15-396 (397)
89 3gre_A Serine/threonine-protei 99.9 7.8E-25 2.7E-29 259.2 28.4 328 20-428 62-437 (437)
90 2pm7_B Protein transport prote 99.9 4.6E-24 1.6E-28 239.9 32.0 247 66-391 8-284 (297)
91 3jrp_A Fusion protein of prote 99.9 3E-24 1E-28 247.2 31.2 254 204-500 7-296 (379)
92 1p22_A F-BOX/WD-repeat protein 99.9 9.8E-24 3.4E-28 250.4 31.4 279 132-494 133-416 (435)
93 4aez_A CDC20, WD repeat-contai 99.9 2.4E-23 8.1E-28 244.3 34.3 277 27-398 99-386 (401)
94 4gga_A P55CDC, cell division c 99.9 4.7E-23 1.6E-27 243.4 36.6 239 205-493 144-396 (420)
95 4gq1_A NUP37; propeller, trans 99.9 9.9E-24 3.4E-28 247.4 29.6 239 209-491 90-388 (393)
96 3dw8_B Serine/threonine-protei 99.9 1.1E-23 3.6E-28 249.4 30.2 265 205-497 25-378 (447)
97 1yfq_A Cell cycle arrest prote 99.9 4E-23 1.4E-27 235.0 31.4 286 20-383 10-311 (342)
98 1yfq_A Cell cycle arrest prote 99.9 7E-23 2.4E-27 232.9 33.3 280 66-428 10-321 (342)
99 2aq5_A Coronin-1A; WD40 repeat 99.9 5.3E-23 1.8E-27 241.1 31.3 249 204-495 77-345 (402)
100 3bg1_A Protein SEC13 homolog; 99.9 8.3E-24 2.9E-28 240.2 23.6 239 255-539 12-292 (316)
101 4ggc_A P55CDC, cell division c 99.9 2.4E-22 8.1E-27 225.8 34.9 239 205-492 64-315 (318)
102 1p22_A F-BOX/WD-repeat protein 99.9 7.1E-23 2.4E-27 243.0 31.5 266 74-433 138-416 (435)
103 2j04_A TAU60, YPL007P, hypothe 99.9 1.1E-23 3.6E-28 251.2 23.1 249 136-490 21-295 (588)
104 2w18_A PALB2, fancn, partner a 99.9 7.4E-23 2.5E-27 230.2 28.1 183 266-490 143-355 (356)
105 4a11_B DNA excision repair pro 99.9 9.9E-23 3.4E-27 237.0 29.6 331 20-430 42-404 (408)
106 2aq5_A Coronin-1A; WD40 repeat 99.9 6.8E-23 2.3E-27 240.2 28.0 282 213-538 39-340 (402)
107 3f3f_A Nucleoporin SEH1; struc 99.9 3.1E-22 1.1E-26 226.2 32.4 299 66-434 10-340 (351)
108 3jrp_A Fusion protein of prote 99.9 4.1E-22 1.4E-26 229.3 31.5 240 255-539 10-286 (379)
109 3jro_A Fusion protein of prote 99.9 7.2E-23 2.5E-27 260.6 27.6 255 203-500 4-294 (753)
110 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.5E-22 2.6E-26 235.3 34.6 249 205-496 99-397 (450)
111 3mmy_A MRNA export factor; mRN 99.9 9.2E-22 3.1E-26 225.1 33.8 280 203-523 34-334 (368)
112 3vu4_A KMHSV2; beta-propeller 99.9 5.6E-22 1.9E-26 229.1 29.4 308 66-492 18-336 (355)
113 3mmy_A MRNA export factor; mRN 99.9 7.5E-22 2.6E-26 225.8 30.2 275 20-383 38-334 (368)
114 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.3E-21 4.6E-26 233.1 32.6 306 209-538 5-389 (450)
115 2xyi_A Probable histone-bindin 99.9 1.2E-21 3.9E-26 232.5 27.0 266 205-494 125-412 (430)
116 3vu4_A KMHSV2; beta-propeller 99.9 5.7E-21 2E-25 220.6 31.8 235 23-349 23-272 (355)
117 3jro_A Fusion protein of prote 99.9 4.1E-22 1.4E-26 253.6 23.7 249 66-393 8-286 (753)
118 3lrv_A PRE-mRNA-splicing facto 99.9 7.2E-21 2.5E-25 218.2 29.8 240 216-497 44-299 (343)
119 3lrv_A PRE-mRNA-splicing facto 99.9 1.7E-21 5.7E-26 223.5 23.3 267 138-491 44-332 (343)
120 1l0q_A Surface layer protein; 99.9 9.9E-20 3.4E-24 211.6 38.5 274 31-404 2-287 (391)
121 1k32_A Tricorn protease; prote 99.9 1.4E-19 4.9E-24 238.5 41.6 231 211-491 247-501 (1045)
122 2xyi_A Probable histone-bindin 99.9 5E-20 1.7E-24 218.4 29.8 257 66-391 127-409 (430)
123 2w18_A PALB2, fancn, partner a 99.9 1.3E-19 4.3E-24 203.9 30.0 176 205-429 153-355 (356)
124 3bws_A Protein LP49; two-domai 99.9 4.7E-19 1.6E-23 208.8 35.6 234 205-492 166-432 (433)
125 3bws_A Protein LP49; two-domai 99.8 8.1E-19 2.8E-23 206.8 34.5 276 24-392 127-432 (433)
126 4gq1_A NUP37; propeller, trans 99.8 5E-20 1.7E-24 215.8 22.8 271 24-348 94-389 (393)
127 1k32_A Tricorn protease; prote 99.8 3.7E-18 1.3E-22 225.1 41.2 285 207-539 294-636 (1045)
128 1l0q_A Surface layer protein; 99.8 2E-18 6.8E-23 200.5 33.9 232 209-495 32-278 (391)
129 2ecf_A Dipeptidyl peptidase IV 99.8 7.4E-18 2.5E-22 213.5 36.2 345 69-494 38-461 (741)
130 1nir_A Nitrite reductase; hemo 99.8 7.9E-18 2.7E-22 205.6 34.2 333 74-496 144-518 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.8 6E-18 2E-22 199.8 27.4 215 206-475 176-410 (415)
132 1nir_A Nitrite reductase; hemo 99.8 5.8E-17 2E-21 197.9 34.9 331 23-434 141-517 (543)
133 1xfd_A DIP, dipeptidyl aminope 99.8 4.8E-18 1.7E-22 214.5 25.1 323 69-482 18-429 (723)
134 2hqs_A Protein TOLB; TOLB, PAL 99.8 6.8E-17 2.3E-21 190.7 29.4 237 220-516 143-407 (415)
135 2ecf_A Dipeptidyl peptidase IV 99.7 5E-16 1.7E-20 196.7 34.4 231 209-492 109-413 (741)
136 2z3z_A Dipeptidyl aminopeptida 99.7 6E-16 2.1E-20 194.9 32.9 244 209-494 121-437 (706)
137 1ri6_A Putative isomerase YBHE 99.7 6.3E-15 2.1E-19 166.8 34.9 285 31-395 5-313 (343)
138 1ri6_A Putative isomerase YBHE 99.7 1.8E-15 6.2E-20 171.2 30.0 247 208-497 37-315 (343)
139 2ojh_A Uncharacterized protein 99.7 1.2E-15 4E-20 168.1 27.4 251 39-382 21-289 (297)
140 1xfd_A DIP, dipeptidyl aminope 99.7 8.6E-16 2.9E-20 193.8 24.3 238 210-492 62-393 (723)
141 3o4h_A Acylamino-acid-releasin 99.7 1.2E-15 4.2E-20 187.8 24.9 254 22-383 24-300 (582)
142 3hfq_A Uncharacterized protein 99.7 5.9E-15 2E-19 168.6 28.4 255 209-496 40-323 (347)
143 2z3z_A Dipeptidyl aminopeptida 99.7 4.8E-15 1.6E-19 186.7 30.1 282 209-539 82-434 (706)
144 1z68_A Fibroblast activation p 99.7 1.4E-15 4.9E-20 192.0 24.6 331 71-494 19-445 (719)
145 3o4h_A Acylamino-acid-releasin 99.7 5.7E-15 2E-19 181.8 27.2 276 68-491 22-312 (582)
146 3hfq_A Uncharacterized protein 99.7 1.6E-13 5.6E-18 156.6 36.7 293 39-398 15-325 (347)
147 2ojh_A Uncharacterized protein 99.7 3.8E-15 1.3E-19 164.0 21.6 229 207-484 40-293 (297)
148 3u4y_A Uncharacterized protein 99.7 3.9E-14 1.3E-18 160.2 30.2 278 27-395 5-307 (331)
149 3u4y_A Uncharacterized protein 99.7 4.9E-14 1.7E-18 159.4 30.8 243 209-498 41-310 (331)
150 4a5s_A Dipeptidyl peptidase 4 99.6 3.8E-14 1.3E-18 179.9 32.7 349 69-493 18-450 (740)
151 3vgz_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 161.0 29.7 231 211-485 91-336 (353)
152 1pby_B Quinohemoprotein amine 99.6 2.4E-14 8.1E-19 161.5 27.1 231 211-494 36-312 (337)
153 3scy_A Hypothetical bacterial 99.6 6E-13 2.1E-17 152.9 37.8 292 39-398 26-345 (361)
154 3vgz_A Uncharacterized protein 99.6 2.4E-13 8.4E-18 154.6 33.7 260 208-524 40-333 (353)
155 2oit_A Nucleoporin 214KDA; NH2 99.6 3.7E-15 1.3E-19 176.9 17.8 214 257-539 37-277 (434)
156 3scy_A Hypothetical bacterial 99.6 2.4E-12 8.1E-17 147.9 35.3 258 208-498 49-345 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.6 1.4E-13 4.7E-18 163.4 24.5 207 210-432 38-279 (434)
158 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.7E-13 1.6E-17 154.7 27.7 244 210-493 41-342 (365)
159 1pby_B Quinohemoprotein amine 99.6 4.4E-13 1.5E-17 151.1 26.5 262 221-539 2-309 (337)
160 1jmx_B Amine dehydrogenase; ox 99.6 1.6E-13 5.6E-18 155.6 22.5 158 214-400 5-183 (349)
161 1z68_A Fibroblast activation p 99.5 5E-14 1.7E-18 177.8 19.2 239 211-492 62-391 (719)
162 3pe7_A Oligogalacturonate lyas 99.5 1.1E-12 3.8E-17 151.8 22.0 268 137-490 42-380 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.5 5E-12 1.7E-16 146.0 25.6 259 24-350 44-343 (365)
164 1jmx_B Amine dehydrogenase; ox 99.5 5.2E-12 1.8E-16 143.2 25.3 257 72-399 4-332 (349)
165 3pe7_A Oligogalacturonate lyas 99.5 1.6E-12 5.4E-17 150.5 20.4 260 25-372 41-362 (388)
166 2oiz_A Aromatic amine dehydrog 99.4 9.5E-12 3.2E-16 143.8 24.6 271 23-372 53-359 (361)
167 3azo_A Aminopeptidase; POP fam 99.4 6.6E-11 2.2E-15 147.6 31.8 197 207-430 128-366 (662)
168 3c5m_A Oligogalacturonate lyas 99.4 4.8E-12 1.6E-16 146.3 19.9 268 25-372 41-362 (396)
169 4a5s_A Dipeptidyl peptidase 4 99.4 1.3E-11 4.6E-16 156.4 24.2 253 258-539 18-352 (740)
170 3azo_A Aminopeptidase; POP fam 99.4 4.4E-11 1.5E-15 149.2 27.7 240 217-497 87-374 (662)
171 3fvz_A Peptidyl-glycine alpha- 99.3 4.8E-10 1.7E-14 127.4 29.1 246 208-492 23-322 (329)
172 1q7f_A NHL, brain tumor CG1071 99.3 1.1E-09 3.7E-14 121.2 31.1 238 207-492 28-280 (286)
173 3c5m_A Oligogalacturonate lyas 99.3 4E-11 1.4E-15 138.6 20.1 233 214-496 86-388 (396)
174 1q7f_A NHL, brain tumor CG1071 99.3 1.4E-09 4.7E-14 120.3 28.8 241 68-391 30-279 (286)
175 2gop_A Trilobed protease; beta 99.3 2E-09 7E-14 122.2 30.3 239 209-521 15-315 (347)
176 2gop_A Trilobed protease; beta 99.2 2.6E-09 8.7E-14 121.4 29.5 224 209-498 59-336 (347)
177 2bkl_A Prolyl endopeptidase; m 99.2 6.7E-10 2.3E-14 139.7 26.2 246 206-498 118-403 (695)
178 2oiz_A Aromatic amine dehydrog 99.2 2.6E-09 9E-14 123.2 26.5 233 213-493 54-335 (361)
179 3fvz_A Peptidyl-glycine alpha- 99.2 1.4E-09 4.7E-14 123.6 23.7 162 208-391 142-321 (329)
180 2xdw_A Prolyl endopeptidase; a 99.2 1.1E-09 3.8E-14 138.0 25.2 240 207-494 123-416 (710)
181 3e5z_A Putative gluconolactona 99.2 1.7E-09 6E-14 120.3 23.9 234 207-494 26-288 (296)
182 1yr2_A Prolyl oligopeptidase; 99.1 4.2E-09 1.4E-13 133.5 27.7 243 209-499 163-448 (741)
183 2bkl_A Prolyl endopeptidase; m 99.1 4.8E-09 1.6E-13 131.9 27.7 245 69-395 122-400 (695)
184 2xdw_A Prolyl endopeptidase; a 99.1 2.8E-08 9.5E-13 125.2 32.6 195 258-494 126-370 (710)
185 1rwi_B Serine/threonine-protei 99.1 1.3E-08 4.3E-13 111.1 24.5 233 210-493 25-265 (270)
186 2dg1_A DRP35, lactonase; beta 99.1 8.2E-09 2.8E-13 116.7 22.7 240 211-494 8-265 (333)
187 1rwi_B Serine/threonine-protei 99.0 3.8E-08 1.3E-12 107.3 25.6 235 69-391 25-263 (270)
188 2dg1_A DRP35, lactonase; beta 99.0 5.4E-08 1.9E-12 109.8 27.5 232 208-484 44-301 (333)
189 2z2n_A Virginiamycin B lyase; 99.0 7.4E-07 2.5E-11 98.1 36.1 263 206-522 12-282 (299)
190 2z2n_A Virginiamycin B lyase; 99.0 6.5E-07 2.2E-11 98.6 34.8 232 209-493 57-296 (299)
191 1yr2_A Prolyl oligopeptidase; 99.0 4.9E-08 1.7E-12 123.6 28.9 160 209-395 268-444 (741)
192 1qks_A Cytochrome CD1 nitrite 99.0 6.6E-07 2.2E-11 109.1 37.0 329 77-496 165-542 (567)
193 2mad_H Methylamine dehydrogena 99.0 1.9E-07 6.4E-12 108.1 30.3 255 23-355 69-357 (373)
194 3sjl_D Methylamine dehydrogena 98.9 8.4E-08 2.9E-12 110.5 24.8 122 215-358 232-373 (386)
195 3no2_A Uncharacterized protein 98.9 2.1E-07 7.3E-12 102.9 25.0 180 267-494 4-197 (276)
196 1qks_A Cytochrome CD1 nitrite 98.9 2.2E-06 7.7E-11 104.4 35.6 291 210-539 198-537 (567)
197 3no2_A Uncharacterized protein 98.9 3.3E-07 1.1E-11 101.4 25.5 216 219-481 4-231 (276)
198 3e5z_A Putative gluconolactona 98.9 2.6E-07 8.8E-12 102.6 24.3 193 257-494 28-248 (296)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1.3E-06 4.3E-11 97.3 26.0 118 210-348 173-299 (314)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 2E-06 6.8E-11 95.7 27.3 239 210-493 19-300 (314)
201 3c75_H MADH, methylamine dehyd 98.7 7.5E-07 2.6E-11 104.3 23.9 254 24-356 122-410 (426)
202 3dsm_A Uncharacterized protein 98.7 5.4E-06 1.9E-10 93.8 30.5 232 259-539 46-301 (328)
203 2qc5_A Streptogramin B lactona 98.7 1.2E-05 4.1E-10 88.3 32.5 239 208-498 19-265 (300)
204 3dsm_A Uncharacterized protein 98.7 3.9E-06 1.3E-10 95.0 28.7 231 210-491 45-301 (328)
205 2qc5_A Streptogramin B lactona 98.7 1.2E-05 4E-10 88.4 31.6 230 209-490 62-298 (300)
206 3g4e_A Regucalcin; six bladed 98.7 3.1E-06 1E-10 94.3 26.3 146 208-372 97-253 (297)
207 1xip_A Nucleoporin NUP159; bet 98.6 6.9E-07 2.4E-11 103.2 18.7 187 257-526 38-233 (388)
208 2mad_H Methylamine dehydrogena 98.6 3E-05 1E-09 89.5 31.3 115 213-352 70-199 (373)
209 3g4e_A Regucalcin; six bladed 98.6 1.1E-05 3.7E-10 89.8 26.6 221 211-482 15-261 (297)
210 3iuj_A Prolyl endopeptidase; h 98.6 2.4E-06 8.3E-11 107.2 22.8 244 207-498 127-411 (693)
211 1xip_A Nucleoporin NUP159; bet 98.6 1.7E-06 5.7E-11 100.0 19.5 126 211-372 90-225 (388)
212 3iuj_A Prolyl endopeptidase; h 98.6 1.7E-06 5.9E-11 108.5 21.3 237 25-350 134-407 (693)
213 3hrp_A Uncharacterized protein 98.5 8.8E-06 3E-10 95.3 25.6 225 69-357 132-362 (409)
214 2ghs_A AGR_C_1268P; regucalcin 98.5 3.4E-05 1.2E-09 87.1 27.6 219 211-484 51-293 (326)
215 3hrp_A Uncharacterized protein 98.5 2E-05 6.7E-10 92.3 25.7 249 209-490 131-408 (409)
216 2qe8_A Uncharacterized protein 98.5 3.2E-06 1.1E-10 96.4 18.2 263 25-372 22-302 (343)
217 4a2l_A BT_4663, two-component 98.4 0.014 4.9E-07 74.0 54.8 382 25-500 178-579 (795)
218 1mda_H Methylamine dehydrogena 98.4 1.1E-05 3.8E-10 92.7 21.3 120 217-358 219-356 (368)
219 2ghs_A AGR_C_1268P; regucalcin 98.4 7.6E-05 2.6E-09 84.2 27.2 140 209-372 134-283 (326)
220 2qe8_A Uncharacterized protein 98.3 6.7E-05 2.3E-09 85.3 23.4 250 209-498 17-284 (343)
221 3sjl_D Methylamine dehydrogena 98.2 0.00065 2.2E-08 78.1 30.9 274 262-580 38-361 (386)
222 3dr2_A Exported gluconolactona 98.2 8.1E-05 2.8E-09 82.9 21.7 104 210-339 189-298 (305)
223 4a2l_A BT_4663, two-component 98.2 0.014 4.6E-07 74.1 44.7 381 25-500 220-622 (795)
224 3dr2_A Exported gluconolactona 98.2 0.00023 7.9E-09 79.2 25.0 159 209-395 86-270 (305)
225 3c75_H MADH, methylamine dehyd 98.1 0.0023 7.8E-08 74.7 32.6 270 266-581 82-401 (426)
226 2hz6_A Endoplasmic reticulum t 98.0 2.9E-06 9.8E-11 98.0 4.6 178 267-494 8-194 (369)
227 3v9f_A Two-component system se 98.0 0.098 3.4E-06 66.0 47.2 393 25-500 168-576 (781)
228 2ece_A 462AA long hypothetical 98.0 0.00071 2.4E-08 78.6 23.8 118 209-336 251-399 (462)
229 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.011 3.9E-07 67.2 32.6 251 267-579 102-375 (376)
230 1npe_A Nidogen, entactin; glyc 97.9 0.0099 3.4E-07 64.3 30.5 219 70-372 38-262 (267)
231 2ece_A 462AA long hypothetical 97.9 0.0013 4.5E-08 76.3 23.5 215 258-491 83-351 (462)
232 3hxj_A Pyrrolo-quinoline quino 97.8 0.0012 4.2E-08 73.3 21.6 210 220-489 107-321 (330)
233 1yiq_A Quinohemoprotein alcoho 97.8 0.0015 5.2E-08 81.5 24.0 79 261-354 239-344 (689)
234 1yiq_A Quinohemoprotein alcoho 97.7 0.0047 1.6E-07 77.0 27.1 259 267-565 120-531 (689)
235 1fwx_A Nitrous oxide reductase 97.6 0.0012 3.9E-08 79.4 19.2 242 217-496 98-435 (595)
236 1kb0_A Quinohemoprotein alcoho 97.6 0.0044 1.5E-07 77.2 25.3 167 213-400 247-515 (677)
237 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.01 3.6E-07 67.6 26.4 143 268-433 188-339 (376)
238 1kb0_A Quinohemoprotein alcoho 97.6 0.0058 2E-07 76.1 25.1 263 267-568 127-536 (677)
239 1fwx_A Nitrous oxide reductase 97.6 0.0026 8.7E-08 76.4 20.7 82 258-348 278-361 (595)
240 3ei3_A DNA damage-binding prot 97.6 0.12 4E-06 68.0 38.0 412 21-492 513-999 (1158)
241 2hz6_A Endoplasmic reticulum t 97.5 1.4E-05 4.9E-10 92.1 0.1 178 219-433 8-194 (369)
242 3hxj_A Pyrrolo-quinoline quino 97.5 0.0043 1.5E-07 68.9 20.4 144 215-396 143-288 (330)
243 1npe_A Nidogen, entactin; glyc 97.5 0.042 1.4E-06 59.2 27.8 160 209-397 36-203 (267)
244 1mda_H Methylamine dehydrogena 97.4 0.017 5.8E-07 66.1 24.1 89 279-392 47-158 (368)
245 1k3i_A Galactose oxidase precu 97.3 0.022 7.6E-07 70.5 26.2 72 260-350 246-325 (656)
246 3v9f_A Two-component system se 97.3 0.7 2.4E-05 58.1 51.7 392 25-500 120-532 (781)
247 2fp8_A Strictosidine synthase; 97.2 0.032 1.1E-06 62.1 22.8 121 210-356 127-276 (322)
248 2xe4_A Oligopeptidase B; hydro 97.1 0.051 1.7E-06 68.4 26.2 116 210-349 175-305 (751)
249 2fp8_A Strictosidine synthase; 97.0 0.11 3.8E-06 57.7 25.4 248 258-539 20-312 (322)
250 3nol_A Glutamine cyclotransfer 97.0 0.033 1.1E-06 60.0 19.8 111 261-399 47-162 (262)
251 2iwa_A Glutamine cyclotransfer 97.0 0.071 2.4E-06 57.9 22.6 116 259-399 23-142 (266)
252 3qqz_A Putative uncharacterize 96.9 0.37 1.3E-05 51.8 26.6 128 204-347 22-150 (255)
253 2xe4_A Oligopeptidase B; hydro 96.8 0.03 1E-06 70.5 20.2 110 258-393 175-305 (751)
254 2xbg_A YCF48-like protein; pho 96.7 1.1 3.8E-05 49.8 31.3 186 210-426 123-317 (327)
255 1kv9_A Type II quinohemoprotei 96.6 0.26 8.8E-06 61.1 26.6 260 268-564 117-513 (668)
256 2iwa_A Glutamine cyclotransfer 96.6 0.31 1.1E-05 52.7 23.4 190 210-431 22-237 (266)
257 2p4o_A Hypothetical protein; p 96.5 1.1 3.7E-05 49.2 28.3 115 209-349 32-148 (306)
258 2xbg_A YCF48-like protein; pho 96.5 1.3 4.5E-05 49.2 29.1 245 208-499 35-286 (327)
259 1k3i_A Galactose oxidase precu 96.5 0.054 1.8E-06 67.0 19.0 113 261-394 190-325 (656)
260 3mbr_X Glutamine cyclotransfer 96.4 0.25 8.5E-06 52.7 21.1 111 261-399 25-140 (243)
261 2ism_A Putative oxidoreductase 96.4 0.61 2.1E-05 52.6 26.0 69 25-97 36-113 (352)
262 3v64_C Agrin; beta propeller, 96.3 1.2 4E-05 50.2 27.5 155 210-393 74-235 (349)
263 2p4o_A Hypothetical protein; p 96.3 1.1 3.9E-05 49.0 26.9 73 258-351 33-107 (306)
264 1kv9_A Type II quinohemoprotei 96.3 0.34 1.2E-05 60.0 24.6 78 261-355 234-340 (668)
265 3a9g_A Putative uncharacterize 96.1 2.2 7.6E-05 48.1 28.5 57 25-85 34-93 (354)
266 3v65_B Low-density lipoprotein 96.0 1.4 4.8E-05 50.3 26.4 156 209-393 116-278 (386)
267 3s94_A LRP-6, low-density lipo 95.9 4.7 0.00016 49.1 38.6 235 33-356 11-251 (619)
268 3qqz_A Putative uncharacterize 95.9 1.8 6.1E-05 46.5 24.5 126 208-345 120-250 (255)
269 3v65_B Low-density lipoprotein 95.9 2.4 8.1E-05 48.4 27.4 121 210-356 203-326 (386)
270 3nok_A Glutaminyl cyclase; bet 95.8 0.45 1.5E-05 51.2 19.3 110 222-356 108-218 (268)
271 3nok_A Glutaminyl cyclase; bet 95.8 0.34 1.2E-05 52.2 18.3 110 261-399 59-171 (268)
272 3ei3_A DNA damage-binding prot 95.8 8.1 0.00028 50.6 45.3 112 461-582 827-955 (1158)
273 1w6s_A Methanol dehydrogenase 95.8 1.8 6.1E-05 52.6 26.9 79 262-356 111-199 (599)
274 2ism_A Putative oxidoreductase 95.5 3 0.0001 46.9 26.1 111 210-336 32-153 (352)
275 1ijq_A LDL receptor, low-densi 95.5 4 0.00014 45.0 29.4 233 34-355 4-245 (316)
276 3v64_C Agrin; beta propeller, 95.4 4.6 0.00016 45.2 29.7 121 210-356 160-283 (349)
277 3nol_A Glutamine cyclotransfer 95.4 0.43 1.5E-05 51.3 17.1 113 220-357 96-210 (262)
278 3tc9_A Hypothetical hydrolase; 95.3 3.4 0.00011 47.9 26.2 151 211-391 139-300 (430)
279 3mbr_X Glutamine cyclotransfer 95.1 1.2 4E-05 47.4 19.5 110 222-356 77-187 (243)
280 3sov_A LRP-6, low-density lipo 95.1 2.7 9.1E-05 46.6 23.6 120 210-355 123-245 (318)
281 2g8s_A Glucose/sorbosone dehyd 95.1 5 0.00017 45.1 26.2 58 25-85 23-86 (353)
282 2ad6_A Methanol dehydrogenase 95.1 3.4 0.00012 49.9 26.2 56 338-399 443-501 (571)
283 3p5b_L Low density lipoprotein 94.7 7.6 0.00026 44.4 31.8 162 208-395 111-280 (400)
284 2ad6_A Methanol dehydrogenase 94.7 2.9 0.0001 50.4 24.3 70 268-356 115-193 (571)
285 3m0c_C LDL receptor, low-densi 94.4 9.1 0.00031 48.0 28.3 165 208-398 423-595 (791)
286 3sov_A LRP-6, low-density lipo 94.4 7.5 0.00026 42.9 26.5 157 209-393 35-198 (318)
287 4hw6_A Hypothetical protein, I 94.2 10 0.00035 43.8 26.7 117 209-347 182-303 (433)
288 3tc9_A Hypothetical hydrolase; 94.2 0.96 3.3E-05 52.6 17.7 116 209-348 179-301 (430)
289 3a9g_A Putative uncharacterize 94.0 9.3 0.00032 42.9 25.0 114 209-337 29-154 (354)
290 1flg_A Protein (quinoprotein e 93.8 16 0.00053 44.1 30.0 71 268-355 117-200 (582)
291 3sre_A PON1, serum paraoxonase 93.3 12 0.00042 42.0 24.0 74 257-347 221-297 (355)
292 4hw6_A Hypothetical protein, I 93.2 13 0.00045 42.9 25.0 146 257-429 139-302 (433)
293 3das_A Putative oxidoreductase 92.8 15 0.0005 41.2 26.8 52 25-78 37-90 (347)
294 3pbp_A Nucleoporin NUP82; beta 92.5 0.54 1.8E-05 53.9 11.2 121 25-157 71-208 (452)
295 1ijq_A LDL receptor, low-densi 92.5 15 0.0005 40.3 30.2 159 209-393 30-196 (316)
296 2vpj_A Kelch-like protein 12; 91.5 13 0.00045 39.9 21.1 66 473-539 206-277 (301)
297 3kya_A Putative phosphatase; s 91.5 26 0.0009 41.1 27.2 136 209-353 310-480 (496)
298 1n7d_A LDL receptor, low-densi 91.0 0.78 2.7E-05 57.0 11.6 122 212-357 499-623 (699)
299 2g8s_A Glucose/sorbosone dehyd 90.4 4.9 0.00017 45.1 16.7 118 210-337 19-149 (353)
300 3ii7_A Kelch-like protein 7; p 90.1 19 0.00066 38.7 20.8 66 473-539 200-271 (306)
301 3p5b_L Low density lipoprotein 90.0 30 0.001 39.3 30.8 123 210-356 203-328 (400)
302 2xn4_A Kelch-like protein 2; s 89.9 18 0.00061 38.9 20.3 66 473-539 204-275 (302)
303 3m0c_C LDL receptor, low-densi 89.7 49 0.0017 41.3 29.0 122 210-355 515-639 (791)
304 4a0p_A LRP6, LRP-6, low-densit 89.6 44 0.0015 40.6 28.9 201 209-439 37-245 (628)
305 4a0p_A LRP6, LRP-6, low-densit 89.6 44 0.0015 40.5 46.5 120 210-357 124-246 (628)
306 1cru_A Protein (soluble quinop 89.5 6.3 0.00022 46.0 17.1 118 209-338 27-164 (454)
307 3das_A Putative oxidoreductase 89.0 8.9 0.0003 43.0 17.0 122 209-338 32-160 (347)
308 1flg_A Protein (quinoprotein e 88.2 10 0.00035 45.7 18.2 22 266-287 331-355 (582)
309 1w6s_A Methanol dehydrogenase 87.9 15 0.00051 44.4 19.3 34 323-356 111-148 (599)
310 3pbp_A Nucleoporin NUP82; beta 87.5 6.8 0.00023 44.9 14.6 116 210-335 67-197 (452)
311 3amr_A 3-phytase; beta-propell 87.4 41 0.0014 37.6 23.7 122 257-391 128-262 (355)
312 2p9w_A MAL S 1 allergenic prot 87.3 21 0.0007 39.6 18.2 151 261-430 17-214 (334)
313 3s25_A Hypothetical 7-bladed b 86.9 25 0.00087 38.3 18.9 63 215-286 110-175 (302)
314 1zgk_A Kelch-like ECH-associat 86.9 32 0.0011 37.1 19.9 66 473-539 215-286 (308)
315 1cru_A Protein (soluble quinop 86.8 52 0.0018 38.1 29.6 63 22-86 28-98 (454)
316 3s25_A Hypothetical 7-bladed b 86.7 40 0.0014 36.7 24.1 62 215-286 151-213 (302)
317 2p9w_A MAL S 1 allergenic prot 86.5 25 0.00087 38.9 18.3 77 258-348 138-215 (334)
318 1tl2_A L10, protein (tachylect 85.3 11 0.00037 39.3 13.6 112 210-342 42-157 (236)
319 1n7d_A LDL receptor, low-densi 85.2 3 0.0001 51.6 11.4 160 209-394 406-573 (699)
320 3amr_A 3-phytase; beta-propell 84.2 57 0.002 36.4 24.2 131 211-356 130-272 (355)
321 3sre_A PON1, serum paraoxonase 84.2 40 0.0014 37.7 19.1 111 211-336 52-183 (355)
322 3mkq_B Coatomer subunit alpha; 78.7 3.1 0.0001 41.8 6.4 57 874-937 5-61 (177)
323 2vpj_A Kelch-like protein 12; 78.2 74 0.0025 33.8 18.3 27 473-499 253-285 (301)
324 1tl2_A L10, protein (tachylect 76.7 19 0.00066 37.5 11.8 106 221-346 5-114 (236)
325 2wg3_C Hedgehog-interacting pr 75.8 38 0.0013 39.4 15.8 122 210-339 15-160 (463)
326 1bpo_A Protein (clathrin); cla 74.9 1.3E+02 0.0043 34.7 22.6 206 31-287 116-331 (494)
327 3kya_A Putative phosphatase; s 69.3 1.8E+02 0.006 34.0 22.4 114 257-391 139-277 (496)
328 2k85_A Glucocorticoid receptor 68.4 3.3 0.00011 34.1 2.9 41 1077-1117 8-49 (69)
329 2xn4_A Kelch-like protein 2; s 67.5 1.3E+02 0.0045 31.8 19.9 27 473-499 251-283 (302)
330 2xzh_A Clathrin heavy chain 1; 67.0 1.6E+02 0.0054 32.6 22.4 206 31-287 117-332 (365)
331 1suu_A DNA gyrase subunit A; t 62.8 1.8E+02 0.006 31.7 25.1 118 219-347 113-230 (312)
332 3ii7_A Kelch-like protein 7; p 60.9 1.7E+02 0.0059 30.9 20.3 27 473-499 247-279 (306)
333 4gq2_M Nucleoporin NUP120; bet 60.3 55 0.0019 41.8 13.8 38 318-355 236-273 (950)
334 3s94_A LRP-6, low-density lipo 55.7 3.3E+02 0.011 32.6 46.1 192 25-286 45-242 (619)
335 1xi4_A Clathrin heavy chain; a 55.6 1.8E+02 0.0061 38.6 16.9 67 31-99 116-189 (1630)
336 2be1_A Serine/threonine-protei 54.6 1.3E+02 0.0046 33.1 14.0 65 269-351 11-79 (339)
337 2uvk_A YJHT; unknown function, 52.7 2.5E+02 0.0086 30.3 20.7 67 471-538 250-340 (357)
338 4asc_A Kelch repeat and BTB do 46.9 2.9E+02 0.0098 29.3 25.6 52 473-525 196-253 (315)
339 4fhn_B Nucleoporin NUP120; pro 46.8 56 0.0019 42.7 10.8 37 319-355 239-275 (1139)
340 3zwu_A Alkaline phosphatase PH 43.2 2.7E+02 0.0091 33.3 15.0 19 317-335 530-548 (592)
341 1zgk_A Kelch-like ECH-associat 42.4 3.3E+02 0.011 28.7 20.0 66 473-539 168-239 (308)
342 1zvt_A Topoisomerase IV subuni 42.3 3.2E+02 0.011 28.6 17.3 127 209-348 33-163 (256)
343 3qhy_B Beta-lactamase inhibito 42.1 3.4E+02 0.012 28.7 24.0 185 22-288 24-208 (282)
344 1suu_A DNA gyrase subunit A; t 40.1 3.9E+02 0.013 28.9 24.5 80 208-287 150-231 (312)
345 3qhy_B Beta-lactamase inhibito 38.9 3.8E+02 0.013 28.4 18.3 179 210-429 25-205 (282)
346 1bpo_A Protein (clathrin); cla 37.3 5.3E+02 0.018 29.7 28.0 29 258-286 260-288 (494)
347 2zwa_A Leucine carboxyl methyl 36.3 6.3E+02 0.021 30.5 17.5 72 468-539 544-634 (695)
348 3no0_A DNA gyrase subunit A; D 35.0 4.3E+02 0.015 27.9 19.9 80 208-287 115-196 (276)
349 4gq2_M Nucleoporin NUP120; bet 32.7 8.5E+02 0.029 30.7 19.5 89 138-240 177-267 (950)
350 2woz_A Kelch repeat and BTB do 32.5 4.7E+02 0.016 27.6 22.3 52 473-525 206-263 (318)
351 1zi0_A DNA gyrase subunit A; b 32.0 5.1E+02 0.017 27.8 25.5 129 208-347 94-225 (307)
352 4a9v_A PHOX; hydrolase, beta-p 31.9 5.8E+02 0.02 30.3 15.0 20 318-337 531-550 (592)
353 1xi4_A Clathrin heavy chain; a 28.8 1.2E+03 0.041 31.1 19.5 28 259-286 261-288 (1630)
354 2ao6_B NCOA-2, 14-MER fragment 25.8 44 0.0015 21.3 2.1 19 772-790 3-21 (26)
355 3sbq_A Nitrous-oxide reductase 25.3 68 0.0023 38.0 5.5 110 214-337 328-454 (638)
356 2woz_A Kelch repeat and BTB do 25.0 6.2E+02 0.021 26.6 20.3 27 472-498 252-293 (318)
357 4asc_A Kelch repeat and BTB do 23.6 6.5E+02 0.022 26.3 23.0 67 472-539 147-220 (315)
358 2wg3_C Hedgehog-interacting pr 23.3 8.3E+02 0.028 27.9 14.5 30 257-286 14-44 (463)
359 1wp5_A Topoisomerase IV; broke 22.7 7.5E+02 0.026 26.7 24.9 117 220-347 106-224 (323)
360 3uc1_A DNA gyrase subunit A; D 22.0 7.8E+02 0.027 26.6 25.5 81 208-288 145-229 (327)
361 1zi0_A DNA gyrase subunit A; b 21.8 7.5E+02 0.026 26.4 26.1 79 209-287 146-226 (307)
362 3no0_A DNA gyrase subunit A; D 20.9 7.5E+02 0.025 26.0 15.9 128 208-347 67-195 (276)
363 2xzh_A Clathrin heavy chain 1; 20.4 8.9E+02 0.03 26.7 31.1 197 261-495 71-293 (365)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-38 Score=388.51 Aligned_cols=474 Identities=16% Similarity=0.198 Sum_probs=334.8
Q ss_pred CCcee--EEEeecCeEEEEEcC-CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE
Q 001165 20 SSQQI--IYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 20 ~~~~i--v~fS~dg~llAs~s~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l 96 (1134)
|...| ++|||||++||++++ ++|+|||.+ +. .+..+. .|.+.+.+++|||||++||+++.||+|+|||+
T Consensus 15 H~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~-~~~~l~------gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQTLT------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC-EEEEEE------CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-EEEEEe------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 55555 899999999999874 689999975 32 233322 24578999999999999999999999999996
Q ss_pred EecCccee-cCCCCCCCcceeeEEEeeceeec------------------------------------------------
Q 001165 97 QITEKSIQ-IGGKQPSGLFFIKISLVLNEQLP------------------------------------------------ 127 (1134)
Q Consensus 97 ~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~------------------------------------------------ 127 (1134)
.. +.+. ..+|.. .+.+++|.++++..
T Consensus 87 ~~--~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 87 NG--QLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp TS--CEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CC--CEEEEEECCCC---CEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccc
Confidence 42 1111 112211 22333333222110
Q ss_pred --------------cccccceE--EEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCc-c
Q 001165 128 --------------FAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-L 190 (1134)
Q Consensus 128 --------------~~~~~~~V--~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-l 190 (1134)
.......| .++.+++..+++++.+|.+++|+.+++.... +..+... +..+.+..++. +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~--~~~~~~~---v~~~~~s~dg~~l 236 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSS---VRGVAFSPDGQTI 236 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE--EECCSSC---EEEEEECTTSSCE
T ss_pred ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEE--EecCCCC---EEEEEECCCCCEE
Confidence 00111122 3456788889999999999876544432221 2222222 33333444443 3
Q ss_pred ccccCCCcc--------cccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEE
Q 001165 191 ASVDTSGAF--------VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCA 262 (1134)
Q Consensus 191 ~s~~~~~~~--------~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 262 (1134)
.+++.++.. ....+.+|...|.+++|+|+++.+++++.||.+++|+.+........ .+...+.++
T Consensus 237 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~-------~h~~~v~~~ 309 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT-------GHSSSVWGV 309 (577)
T ss_dssp EEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC-------CCSSCEEEE
T ss_pred EEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEe-------cCCCCeEEE
Confidence 333322211 11234578889999999999999999999999999986543221111 234788999
Q ss_pred EECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEE
Q 001165 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 342 (1134)
Q Consensus 263 a~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~ 342 (1134)
+|+|+++.+++|+.||+|++||.+ ++.+.++.+ |...|.+++|+|||++|++|+.||.|+
T Consensus 310 ~~~~~~~~l~t~~~d~~i~~w~~~----------------~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 310 AFSPDGQTIASASDDKTVKLWNRN----------------GQHLQTLTG----HSSSVWGVAFSPDGQTIASASDDKTVK 369 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT----------------SCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEeCC----------------CCeeEEEeC----CCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 999999999999999999999986 223344455 999999999999999999999999999
Q ss_pred EEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEE
Q 001165 343 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL 416 (1134)
Q Consensus 343 vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~ 416 (1134)
+|+..+ +++.++.+| ...|.+++|+|++ +.+++|+ .+++|+.. ++++....+|...| ++|++ ++.++
T Consensus 370 ~~~~~~-~~~~~~~~~-~~~v~~~~~s~dg----~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 370 LWNRNG-QLLQTLTGH-SSSVRGVAFSPDG----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp EEETTC-CEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred EEcCCC-CEEEEecCC-CCCeEEEEECCCC----CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 999754 667888877 6789999999999 8888876 89999964 56777788999998 55666 88999
Q ss_pred eeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE
Q 001165 417 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 417 S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W 495 (1134)
+++.|+++++|+. .+.. ...+.+|..+|++++|||||++||+++.||.+ +||......
T Consensus 443 ~~~~d~~v~~w~~-~~~~--------------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~ 501 (577)
T 2ymu_A 443 SASDDKTVKLWNR-NGQL--------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 501 (577)
T ss_dssp EEETTSEEEEEET-TSCE--------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEE
T ss_pred EEcCCCEEEEEEC-CCCE--------------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEE
Confidence 9999999999994 2221 34567899999999999999999999999999 999765544
Q ss_pred EEeCCccceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecC-Ccc--EEEEecCCEEEEEE
Q 001165 496 RVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL-AKP--IVMDVYEDYILVTY 570 (1134)
Q Consensus 496 k~F~~~~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~-~~~--~~l~~~~d~llv~~ 570 (1134)
+.+.. |. -.|..+.|. +++++++ +.+..|++|+.. . ..+.+..-. .++ +.+++.+..|+...
T Consensus 502 ~~~~~--h~--~~v~~l~~s~dg~~l~s~-----~~dg~v~lwd~~---~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 502 QTLTG--HS--SSVRGVAFSPDGQTIASA-----SDDKTVKLWNRN---G-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp EEEEC--CS--SCEEEEEECTTSSCEEEE-----ETTSEEEEECTT---S-CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEeC--CC--CCEEEEEEcCCCCEEEEE-----ECcCEEEEEeCC---C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 44432 22 236677776 4467666 344679999863 2 233333322 233 34566777888888
Q ss_pred cCCeEEEEE
Q 001165 571 RPFDVHIFH 579 (1134)
Q Consensus 571 ~d~~i~l~~ 579 (1134)
.|+.|++|+
T Consensus 569 ~D~~i~~Wd 577 (577)
T 2ymu_A 569 SDKTVKLWN 577 (577)
T ss_dssp TTSCEEEEC
T ss_pred CCCEEEEeC
Confidence 999999995
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-39 Score=400.06 Aligned_cols=458 Identities=12% Similarity=0.066 Sum_probs=320.2
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcc
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~ 102 (1134)
..++|||||++||++++++|+||+..++.. ...+. .|.+.+.+++|||||++||+++.||+|+|||+......
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~~~~-~~~~~------~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTD-TEIYT------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTCSSC-CEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCCccc-CeEec------CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 448899999999999989999999964332 22221 24567899999999999999999999999998543211
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCCeEEEEecCC--cEEEEecCCccccceeccccCCCccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFELVHSSNDSSV 178 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~llv~t~dg--~v~~~~wd~~~~~~~~~~~~~~~~~~ 178 (1134)
... . +.++.+.| .+|+++++.+++++.+. ...++.|+... ..
T Consensus 95 ~~~-------------~--------~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~----------- 140 (611)
T 1nr0_A 95 LKT-------------T--------IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SN----------- 140 (611)
T ss_dssp EEE-------------E--------EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BC-----------
T ss_pred eeE-------------e--------ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--Cc-----------
Confidence 100 0 11112223 45677888888777543 24455687321 11
Q ss_pred cccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCC
Q 001165 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG 257 (1134)
Q Consensus 179 i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~ 257 (1134)
..+.+|...|.+++|+|++. .+++++.||++.+|+....... ..+. .|..
T Consensus 141 -----------------------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~--~~l~----~H~~ 191 (611)
T 1nr0_A 141 -----------------------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK--STFG----EHTK 191 (611)
T ss_dssp -----------------------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE--EEEC----CCSS
T ss_pred -----------------------ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe--eeec----cccC
Confidence 02457888999999999987 5999999999999986532211 1111 2457
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeec---ccCCCCcCeEEEEECCCCCEEEE
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCR---YSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~---~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
.+.+++|+|++++||+|+.||+|++||+. +++.+.++.. ...+|.+.|.+++|+|||++||+
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i~lwd~~---------------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGV---------------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT---------------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECC---------------CCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 79999999999999999999999999998 5555555420 00149999999999999999999
Q ss_pred EECCCcEEEEecCCCeeEEEe-------------------------------------------ccCCCCceeeeEEcCC
Q 001165 335 GWKSRGLTVWSVSGCRLMSTI-------------------------------------------RQISLSSISSPIVKPN 371 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl-------------------------------------------~~h~~~~V~sv~~sp~ 371 (1134)
|+.|++|++||+.++++..++ .+| ...|++++|+|+
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spd 335 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITALSSSAD 335 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEECTT
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeCC
Confidence 999999999999877655443 344 678999999999
Q ss_pred CCCCcceEEEcc---eeEEEeCCCceEEEEe-cCCCccEEE--EecCCEEEeeecCCcEEeeeeeeCCCe----------
Q 001165 372 QDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLI--FSFGKCCLNRGVSGMTYARQVIYGEDR---------- 435 (1134)
Q Consensus 372 ~~~~~~~l~sgs---~i~~W~~~~~~l~~~~-~~h~~~v~~--~s~~k~l~S~s~d~ti~~w~l~~~~~~---------- 435 (1134)
+ +.+++|+ ++++|+..++++.... .+|...+.. +++...+++++.|+++++|++..+...
T Consensus 336 g----~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 411 (611)
T 1nr0_A 336 G----KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 411 (611)
T ss_dssp S----SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred C----CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecC
Confidence 9 8899887 9999999998877665 568888854 444668899999999999986432210
Q ss_pred ---E-EEeecC--------CCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCcc
Q 001165 436 ---L-LVVQSE--------DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT 502 (1134)
Q Consensus 436 ---l-~l~~g~--------~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~ 502 (1134)
. ..+... +.....|...+ ... ..|...+.+++|||||++||+|+.||.+ +||+.++.........
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~-~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~ 489 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYSHGK-LTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 489 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEETTE-EEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEeCCc-eee-eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccC
Confidence 0 000000 00111233222 122 2467789999999999999999999999 9999887654332222
Q ss_pred ceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEE--Ee-cCCcc--EEEEecCCEEEEEEcCCeE
Q 001165 503 QEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR--KS-LLAKP--IVMDVYEDYILVTYRPFDV 575 (1134)
Q Consensus 503 ~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~--~~-l~~~~--~~l~~~~d~llv~~~d~~i 575 (1134)
+. -.|..+.|. +++++++ +.+..+++|+... ...+... .. -...+ +.+++.+..|+....|+.|
T Consensus 490 h~--~~v~~v~fspdg~~las~-----s~d~~v~~w~~~~--~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 490 HP--AEITSVAFSNNGAFLVAT-----DQSRKVIPYSVAN--NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp CS--SCEEEEEECTTSSEEEEE-----ETTSCEEEEEGGG--TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CC--CceEEEEECCCCCEEEEE-----cCCCCEEEEEcCC--CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 22 246677776 4566666 3456799998742 0111111 00 01222 4566777788888999999
Q ss_pred EEEEEE
Q 001165 576 HIFHVK 581 (1134)
Q Consensus 576 ~l~~~~ 581 (1134)
++|++.
T Consensus 561 ~lW~~~ 566 (611)
T 1nr0_A 561 IVWNMN 566 (611)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999874
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.7e-37 Score=381.31 Aligned_cols=453 Identities=9% Similarity=0.072 Sum_probs=305.6
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcce-eEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC----CEEEEEEE
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKV 96 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d----g~l~lw~l 96 (1134)
..++|||||++||+++ |++|+|||...... ...... .+.+.+.+++|+|||+.||+++.+ ++|++|+.
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec------ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence 3489999999999987 67999999853221 111111 135789999999999999998875 47888884
Q ss_pred EecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCC-eEEEEecCCcEEEEecCCccccceeccccC
Q 001165 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK-HMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1134)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~-~llv~t~dg~v~~~~wd~~~~~~~~~~~~~ 173 (1134)
... .... .++...| .+|++++. .+++++.|+++++|+ .......
T Consensus 137 ~~~--~~~l-----------------------~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd--~~~~~~~------ 183 (611)
T 1nr0_A 137 GTS--NGNL-----------------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE--GPPFKFK------ 183 (611)
T ss_dssp CCB--CBCC-----------------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE--TTTBEEE------
T ss_pred CCC--ccee-----------------------cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE--CCCCeEe------
Confidence 211 0001 1122223 34556665 588999999998754 3221111
Q ss_pred CCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc-eecccc
Q 001165 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE-FIKIDK 252 (1134)
Q Consensus 174 ~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~-~~~~~~ 252 (1134)
..+.+|...|.+++|+|+++.+++++.||++++|+.......... ......
T Consensus 184 ----------------------------~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~ 235 (611)
T 1nr0_A 184 ----------------------------STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235 (611)
T ss_dssp ----------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred ----------------------------eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccc
Confidence 024578889999999999999999999999999997543321100 000000
Q ss_pred cCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee-----------------------------eeeccCcc
Q 001165 253 ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-----------------------------SLYDWGMR 303 (1134)
Q Consensus 253 ~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l-----------------------------~l~~~~~~ 303 (1134)
..|.+.+++++|+|++++||+|+.|++|++||+.+... .+++ .+.+..++
T Consensus 236 ~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp CSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred cccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 12457899999999999999999999999999974321 1111 11111123
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
+....+.+ |.+.|++++|||||++|++|+.||+|++||+.++.+...+...|...|.+++|++++ .+++++
T Consensus 315 ~~~~~~~g----h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-----~l~s~s 385 (611)
T 1nr0_A 315 SIDQVRYG----HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-----DLFTVS 385 (611)
T ss_dssp EEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-----CEEEEE
T ss_pred CcceEEcC----CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC-----cEEEEE
Confidence 34455555 999999999999999999999999999999998887776644347789999999765 455554
Q ss_pred ---eeEEEeCCCceE--------------EEE-e-------------------------cCCCccE--EEEec-CCEEEe
Q 001165 384 ---SMMQWDEYGYRL--------------YAI-E-------------------------EGSSERV--LIFSF-GKCCLN 417 (1134)
Q Consensus 384 ---~i~~W~~~~~~l--------------~~~-~-------------------------~~h~~~v--~~~s~-~k~l~S 417 (1134)
++++|+..++.+ ... . ..|...+ ++|++ ++.+++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence 888998654211 000 0 0122333 56777 999999
Q ss_pred eecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC-CcE
Q 001165 418 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKW 495 (1134)
Q Consensus 418 ~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s-g~W 495 (1134)
++.|+++++|++..+... .... .+|..+|++++|||||++||+++.|+.+ +|++.+ ++.
T Consensus 466 gs~D~~v~lwd~~~~~~~------------------~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGASVS------------------EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp EETTSEEEEEEEETTEEE------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred eCCCCeEEEEEccCCcee------------------eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 999999999997543211 0122 6789999999999999999999999999 999987 432
Q ss_pred EEeCC-ccceeeeEEEEEEeeC--CEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecC--Ccc--EEEEecCCEEEE
Q 001165 496 RVFGD-ITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKP--IVMDVYEDYILV 568 (1134)
Q Consensus 496 k~F~~-~~~e~~~~v~gl~W~~--~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~--~~~--~~l~~~~d~llv 568 (1134)
... ....+.-.|..+.|.+ +++++| +.+..|++|+.+.... ......... ..+ +.+++.+. ++.
T Consensus 527 --~~~~~~~~H~~~V~~v~fspdg~~lasg-----s~D~~v~lW~~~~~~~-~~~~~~~~h~~~~v~~v~fs~d~~-l~s 597 (611)
T 1nr0_A 527 --AHTNSWTFHTAKVACVSWSPDNVRLATG-----SLDNSVIVWNMNKPSD-HPIIIKGAHAMSSVNSVIWLNETT-IVS 597 (611)
T ss_dssp --SCCCCCCCCSSCEEEEEECTTSSEEEEE-----ETTSCEEEEETTCTTS-CCEEETTSSTTSCEEEEEEEETTE-EEE
T ss_pred --eeeeeeeecccceeEEEECCCCCEEEEE-----ECCCcEEEEECCCccc-ccchhhccCcccCeeEEEEcCCCE-EEE
Confidence 111 1111223477888875 467766 3456799998852221 111111111 122 33455554 666
Q ss_pred EEcCCeEEEEEE
Q 001165 569 TYRPFDVHIFHV 580 (1134)
Q Consensus 569 ~~~d~~i~l~~~ 580 (1134)
...|+.|++|++
T Consensus 598 ~~~D~~i~lW~~ 609 (611)
T 1nr0_A 598 AGQDSNIKFWNV 609 (611)
T ss_dssp EETTSCEEEEEC
T ss_pred ecCCCCEEEEec
Confidence 889999999986
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.6e-36 Score=367.85 Aligned_cols=441 Identities=15% Similarity=0.191 Sum_probs=314.1
Q ss_pred CCcee--EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE
Q 001165 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 20 ~~~~i--v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l 96 (1134)
|...| ++|||||++||+++ |++|+|||.. +. .+.... .+.+.+.+++|+|||++|++++.|+.+++|+.
T Consensus 56 h~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~-~~~~~~------~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~ 127 (577)
T 2ymu_A 56 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQTLT------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-EEEEEC------CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-EEEEEE------CCCCCEEEEEECCCCCEEEEEcCCCceeeccc
Confidence 44444 89999999999987 5699999985 32 233322 13567899999999999999999999999985
Q ss_pred EecCcceec-----------CCC--------------------------CCCCcceeeEEEeeceee-------------
Q 001165 97 QITEKSIQI-----------GGK--------------------------QPSGLFFIKISLVLNEQL------------- 126 (1134)
Q Consensus 97 ~~~~~~~~~-----------~~~--------------------------~~~~~~~~s~~~~~~~~~------------- 126 (1134)
......... ... ......+..+.+.+++..
T Consensus 128 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207 (577)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred ccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEE
Confidence 321100000 000 000111223333333221
Q ss_pred --------ccccccceEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCc-cccccC
Q 001165 127 --------PFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDT 195 (1134)
Q Consensus 127 --------~~~~~~~~V~--~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-l~s~~~ 195 (1134)
.+.++...|. ++++++..+++++.+|.+.+|+.+++.... +..+... +..+.+..++. +.+++.
T Consensus 208 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~--~~~~~~~---v~~v~~~~d~~~l~~~~~ 282 (577)
T 2ymu_A 208 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSS---VNGVAFRPDGQTIASASD 282 (577)
T ss_dssp CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE--ECCCSSC---EEEEEECTTSSEEEEEET
T ss_pred eCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE--EecCCCC---EEEEEEcCCCCEEEEEeC
Confidence 1122333443 456788899999999999986544432221 1222222 33334444443 333332
Q ss_pred CCcc--------cccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC
Q 001165 196 SGAF--------VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE 267 (1134)
Q Consensus 196 ~~~~--------~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd 267 (1134)
++.. ....+.+|...|.+++|+|+++.+++++.||.+.+|+.+........ .+...+++++|+|+
T Consensus 283 d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~-------~~~~~v~~~~~s~~ 355 (577)
T 2ymu_A 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT-------GHSSSVWGVAFSPD 355 (577)
T ss_dssp TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC-------CCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe-------CCCCCEEEEEECCC
Confidence 2211 11234578899999999999999999999999999997643322111 23467899999999
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
++.+|+|+.||+|++|+.. ++.+.++.+ |.++|++++|+|||++||+|+.|+.|++||..
T Consensus 356 g~~l~~~~~dg~v~~~~~~----------------~~~~~~~~~----~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNRN----------------GQLLQTLTG----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp SSEEEEEETTSEEEEEETT----------------CCEEEEEEC----CSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCEEEEEeCCCEEEEEcCC----------------CCEEEEecC----CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999999999999964 455666666 99999999999999999999999999999975
Q ss_pred CCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecC
Q 001165 348 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVS 421 (1134)
Q Consensus 348 ~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d 421 (1134)
++++.++.+| ...|++++|+|++ ..+++++ ++++|+.. ++++....+|...| ++|++ ++.+++++.|
T Consensus 416 -~~~~~~~~~~-~~~v~~~~~s~d~----~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 416 -GQLLQTLTGH-SSSVWGVAFSPDD----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp -CCEEEEEECC-SSCEEEEEECTTS----SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred -CCEEEEecCC-CCCeEEEEECCCC----CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 4667788887 7789999999998 8888876 89999975 46677778899888 56677 8999999999
Q ss_pred CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCC
Q 001165 422 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD 500 (1134)
Q Consensus 422 ~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~ 500 (1134)
+++++|+. .++. ...+.+|..+|++++|||||++||+|+.||.+ +||........+..
T Consensus 489 ~~i~iw~~-~~~~--------------------~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~ 547 (577)
T 2ymu_A 489 KTVKLWNR-NGQL--------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 547 (577)
T ss_dssp SEEEEEET-TSCE--------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC
T ss_pred CEEEEEcC-CCCE--------------------EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC
Confidence 99999994 2222 45677899999999999999999999999999 99976554444432
Q ss_pred ccceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEe
Q 001165 501 ITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 501 ~~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~ 537 (1134)
|. -.|.++.|. +++++++ +.+..|++|+
T Consensus 548 --h~--~~v~~~~fs~dg~~l~s~-----~~D~~i~~Wd 577 (577)
T 2ymu_A 548 --HS--SSVWGVAFSPDGQTIASA-----SSDKTVKLWN 577 (577)
T ss_dssp --CS--SCEEEEEECTTSSCEEEE-----ETTSCEEEEC
T ss_pred --CC--CCEEEEEEcCCCCEEEEE-----eCCCEEEEeC
Confidence 22 246677786 4567776 2345688884
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.4e-34 Score=365.06 Aligned_cols=648 Identities=16% Similarity=0.167 Sum_probs=401.4
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
..++|||||++||+++ +++|+||+.. .+..+.... .+.+.+.+++|+|||+.||+++.||.|++|++..+..
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQ------VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEE------CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEe------cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 4489999999999987 5699999996 433333332 1356789999999999999999999999999865321
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~ 181 (1134)
......|. ......++++++..+++++.||.+.+|+++......
T Consensus 90 ~~~~~~~~---------------------~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--------------- 133 (814)
T 3mkq_A 90 VVDFEAHP---------------------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--------------- 133 (814)
T ss_dssp EEEEECCS---------------------SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE---------------
T ss_pred EEEEecCC---------------------CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE---------------
Confidence 11111111 111234566788899999999999998776431110
Q ss_pred ccccCCCccccccCCCcccccccCCCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeE
Q 001165 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV 260 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1134)
..+.+|...|.+++|+| +++.+++++.||.+.+|+......... ... .+...+.
T Consensus 134 --------------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~---~~~~~v~ 188 (814)
T 3mkq_A 134 --------------------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT--LTT---GQERGVN 188 (814)
T ss_dssp --------------------EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE--EEC---CCTTCCC
T ss_pred --------------------EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE--Eec---CCCCCEE
Confidence 02346778899999999 889999999999999999865432211 110 1226788
Q ss_pred EEEECC--CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 261 CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 261 ~va~sp--dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
+++|+| +++++++|+.||+|++||+. +++.+.++.+ |.+.|++++|+|||.+|++|+.|
T Consensus 189 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~---------------~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 189 YVDYYPLPDKPYMITASDDLTIKIWDYQ---------------TKSCVATLEG----HMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp EEEECCSTTCCEEEEECTTSEEEEEETT---------------TTEEEEEEEC----CSSCEEEEEECSSSSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECC---------------CCcEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCC
Confidence 999999 99999999999999999998 7777778777 99999999999999999999999
Q ss_pred CcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecCCCccEEEEec-CCEE
Q 001165 339 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCC 415 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l 415 (1134)
|.|++||+.+++...++..+ ...+.+++++|++. ...+++|. .+.+|+..... ....+++ ++.+
T Consensus 250 g~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~ 316 (814)
T 3mkq_A 250 GTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGR--KNYIASGFDNGFTVLSLGNDE----------PTLSLDPVGKLV 316 (814)
T ss_dssp SCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCG--GGEEEEEETTEEEEEECSCCS----------CCEEECSSSEEE
T ss_pred CeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCC--ceEEEEEeCCCEEEEEcCCCC----------ceeEECCCCCEE
Confidence 99999999999989998877 67899999999971 11355554 77778765432 3355565 5666
Q ss_pred EeeecCCcEEe---------eeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001165 416 LNRGVSGMTYA---------RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 416 ~S~s~d~ti~~---------w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
++++.+..... |++..+.. ..........+...+++++|||||+++|+++ +|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~ 379 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEP----------------LSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEY 379 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSC----------------BCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEE
T ss_pred EECcccccceeeeeeecccccccccCcc----------------ceeeeecCCCCccCCceeEECCCCCEEEEec-CCEE
Confidence 66554432111 11111110 0001223345666789999999999999999 7888
Q ss_pred -EEEccCCcEEEeCCccceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEEecC
Q 001165 487 -LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE 563 (1134)
Q Consensus 487 -lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~~~~ 563 (1134)
+|++...+-.. ...+..+.|. ++.++++ +.+..+++|....-... ....+.+++.+
T Consensus 380 ~i~~~~~~~~~~--------~~~i~~~~~spdg~~la~~-----~~~g~v~l~~~~~~~~~--------~v~~~~~s~dg 438 (814)
T 3mkq_A 380 VIYTALAWRNKA--------FGKCQDFVWGPDSNSYALI-----DETGQIKYYKNFKEVTS--------WSVPMHSAIDR 438 (814)
T ss_dssp EEEETTTTEEEE--------EEECSEEEECTTSSCEEEE-----CTTCCEEEEETTEECTT--------CCCCCSSCCCE
T ss_pred EEEECccccccC--------CCceEEEEEeCCCCeEEEE-----eCCCcEEEEECCCCccc--------eEEcCCcCccc
Confidence 99976432221 1235578887 4456655 34567889965210000 00111223332
Q ss_pred ---CEEEEEEcCCeEEEEEEEEecccCCCCCCeEEEEEEEEEEeeccccCCceeEEccCCCcccccccCCCCCccccccc
Q 001165 564 ---DYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAR 640 (1134)
Q Consensus 564 ---d~llv~~~d~~i~l~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~p~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 640 (1134)
+.++....++.+++|++. +++ .++++.. |+. .+.+. | + ++-++..
T Consensus 439 ~~~~~l~~~~~d~~v~~~d~~-~~~------------~~~~~~~-----~~~---~v~~s-~-d---------g~~la~~ 486 (814)
T 3mkq_A 439 LFSGALLGVKSDGFVYFFDWD-NGT------------LVRRIDV-----NAK---DVIWS-D-N---------GELVMIV 486 (814)
T ss_dssp EECSSSEEEEETTEEEEECTT-TCC------------EEEEESS-----CEE---EEEEC-T-T---------SSEEEEE
T ss_pred eecceEEEEecCCEEEEEECC-cCc------------EEEEEec-----CCC---EEEEc-C-C---------CCEEEEE
Confidence 467777889999999864 121 0112211 111 12221 0 0 0111111
Q ss_pred ------CCcceEEEeeCCEEEEE-------ecCCC---ceeeec---ccee-EEEEccCCCcccccccceeeEEEECCCC
Q 001165 641 ------EPARCLILRANGELSLL-------DLDDG---RERELT---DSVE-LFWVTCGQLEEKTSLIEEVSWLDYGYRG 700 (1134)
Q Consensus 641 ------~~~~~lil~~~g~l~~l-------~~~~~---~~~~l~---~~VE-~~w~~~~~~~~~~~~~~~~~~~~~~~~g 700 (1134)
.....+++..+.+.... .++.+ ....+. +.|- ..|. + -.++|....
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~------~--------~~~i~~t~~ 552 (814)
T 3mkq_A 487 NTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWV------G--------DVFIFTTAT 552 (814)
T ss_dssp ECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEE------T--------TEEEEECTT
T ss_pred EcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEe------C--------CEEEEEcCC
Confidence 11222333222111100 00100 001111 1110 1121 1 124555433
Q ss_pred cEEeccCCCCCCCCccccccCCCccccCCCceeeeeccCCcEEEEEEEeeeecccCCCcccccCCcccccHHHH-HHHHH
Q 001165 701 MQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCL-LRHLL 779 (1134)
Q Consensus 701 ~~vw~~~~~~~~~~~~~~~~~~~~l~f~~~~yPl~i~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~L~~i-l~~ll 779 (1134)
-+++|.+.+. ......++...|-+++.++...++.++.+... ..+.+. ++.+ ....+
T Consensus 553 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~~l~------~~~~~~~~~~ 610 (814)
T 3mkq_A 553 NRLNYFVGGK----------TYNLAHYTKEMYLLGYLARDNKVYLADREVHV------YGYEIS------LEVLEFQTLT 610 (814)
T ss_dssp SEEEEEETTE----------EEEEEECSSCCEEEEEEGGGTEEEEECTTCCE------EEEECC------HHHHHHHHHH
T ss_pred CeEEEEeCCe----------eEEEEECCccEEEEEEEecCCEEEEEcCCCCE------EEEEEC------cHHHHHhHHH
Confidence 4555432111 11223345567777777777777666533111 111111 0111 12244
Q ss_pred hcCcHHHHHH-HHHHcCCCCCchhHHHHHHHHHhhcccccccccccccCCc-cccchhhhHHHHHHHHhcCchhHHHHHh
Q 001165 780 QRDKIEEALR-LAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIP-KRAASFSLLEKTCNFIRNFPEYLNVVVS 857 (1134)
Q Consensus 780 ~~~~~~~a~~-~a~~~~~l~~F~h~LE~lLh~vLe~e~~~~~~~~~~~~i~-~~~~~~~ll~~v~~fi~~f~~~l~ivv~ 857 (1134)
.+++.+.|.+ +.. .|+ . ..+.++++|++.. ++++...+
T Consensus 611 ~~~~~~~a~~~~l~----------------------------------~i~~~-----~~~~~~~~~l~~~-~~~~~a~~ 650 (814)
T 3mkq_A 611 LRGEIEEAIENVLP----------------------------------NVEGK-----DSLTKIARFLEGQ-EYYEEALN 650 (814)
T ss_dssp HTTCHHHHHHHTGG----------------------------------GCCCH-----HHHHHHHHHHHHT-TCHHHHHH
T ss_pred HhCCHHHHHHHHHh----------------------------------cCCch-----HHHHHHHHHHHhC-CChHHhee
Confidence 4566666543 211 133 2 4668889999888 77888777
Q ss_pred hcccccccchHHhHhccCChHHHHHHHHhcCcHHHHHhHHhhhhhccCchhhHHHHHHHHHHHhccchHhHHHHHHHhhh
Q 001165 858 VARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLL 937 (1134)
Q Consensus 858 caRKtE~~~W~~LF~~~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~ 937 (1134)
.++. |..-|+.+++.|+++.|..+..-+ .+.+.+.+|-++|++.+++++|.+..+=++
T Consensus 651 ~~~~---------------~~~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 651 ISPD---------------QDQKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HCCC---------------HHHHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCCC---------------cchheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7764 444599999999999998886533 246889999999999999999999886554
Q ss_pred c
Q 001165 938 R 938 (1134)
Q Consensus 938 ~ 938 (1134)
.
T Consensus 709 d 709 (814)
T 3mkq_A 709 D 709 (814)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-33 Score=344.72 Aligned_cols=464 Identities=9% Similarity=0.068 Sum_probs=316.4
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcc---eeEEEeecChhhHHhhcc-eeEEEEcC--CceEEEEEeCCCEEEEEEE
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHK---VRLGKYKRDSESVQREGE-NLQAVWSP--DTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~---~~l~~~~r~~~sl~~~G~-~~~v~wSP--Dg~~Lav~t~dg~l~lw~l 96 (1134)
..++|||||++||+++++.|+||+...+. .....+. .+.+. +.+++|+| ||++||+++.||+|++|++
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred eEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 34899999999999999999999997330 2222221 24567 89999999 9999999999999999999
Q ss_pred EecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCCeEEEEecCC--cEEEEecCCccccceecccc
Q 001165 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFELVHS 172 (1134)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~llv~t~dg--~v~~~~wd~~~~~~~~~~~~ 172 (1134)
..+...... .... .. .+..+...| .+++++++.+++++.+. ...++.|+.. ...
T Consensus 96 ~~~~~~~~~---------~~~~----~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~~~----- 153 (615)
T 1pgu_A 96 TFDKESNSV---------EVNV----KS--EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSL----- 153 (615)
T ss_dssp EEEGGGTEE---------EEEE----EE--EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEE-----
T ss_pred CCCcccccc---------cccc----cc--hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--Ccc-----
Confidence 653100000 0000 00 011112223 45677888888888762 2344557732 111
Q ss_pred CCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceeccc
Q 001165 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKID 251 (1134)
Q Consensus 173 ~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~ 251 (1134)
..+.+|...|.+++|+|+++ .+++++.||.+.+|+........ .+.
T Consensus 154 -----------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~~-- 200 (615)
T 1pgu_A 154 -----------------------------GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDR-- 200 (615)
T ss_dssp -----------------------------EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EEC--
T ss_pred -----------------------------eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee--eec--
Confidence 02346788899999999998 89999999999999975433211 111
Q ss_pred ccCCCC---CeEEEEECCC-CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEe-ecccCCCCcCeEEEEEC
Q 001165 252 KELGSG---DAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTF-CRYSMDDTGPVSCIAWT 326 (1134)
Q Consensus 252 ~~~~~~---~~~~va~spd-g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l-~~~~~~h~g~V~~l~fS 326 (1134)
.+.. .+++++|+|+ ++++++|+.||.|++||+. +++.+..+ . ....|.++|.+++|+
T Consensus 201 --~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~---------------~~~~~~~~~~-~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 201 --THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---------------SGEFLKYIED-DQEPVQGGIFALSWL 262 (615)
T ss_dssp --SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT---------------TCCEEEECCB-TTBCCCSCEEEEEES
T ss_pred --ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC---------------CCCEeEEecc-cccccCCceEEEEEc
Confidence 1334 7999999999 9999999999999999998 67777665 3 000399999999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeeEEEeccCC---CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec
Q 001165 327 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 327 PDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~---~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~ 400 (1134)
||++|++++.||.|++||+.+++++.++..+. ...+.++.++ ++ ..+++|+ .+++|+..+++.+....
T Consensus 263 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 263 -DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN----GRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp -SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET----TEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred -CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC----CeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 99999999999999999999999888887641 3467777775 55 6677665 89999999888887777
Q ss_pred CCCccEEEEec-----------------------------------CCEEEeeecCCcEEeeeeeeCC------------
Q 001165 401 GSSERVLIFSF-----------------------------------GKCCLNRGVSGMTYARQVIYGE------------ 433 (1134)
Q Consensus 401 ~h~~~v~~~s~-----------------------------------~k~l~S~s~d~ti~~w~l~~~~------------ 433 (1134)
+|...|..+.+ ++.+++++.|+++++|++..+.
T Consensus 337 ~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~ 416 (615)
T 1pgu_A 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANN 416 (615)
T ss_dssp CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECS
T ss_pred CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcC
Confidence 77666544433 5667777777777777765321
Q ss_pred ----------CeEEEe-----------------------------ecC-CCcccccccc--ccc-eeeccCCCceEEEEE
Q 001165 434 ----------DRLLVV-----------------------------QSE-DTDELKILHL--NLP-VSYISQNWPVQHVAA 470 (1134)
Q Consensus 434 ----------~~l~l~-----------------------------~g~-~~~~~~w~~~--~~~-~~~~~h~~~V~~va~ 470 (1134)
..+.++ .+. +.....|... ++. ..+.+|..+|++++|
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (615)
T 1pgu_A 417 DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 496 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEE
T ss_pred CCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEE
Confidence 111111 111 1111123211 111 455688999999999
Q ss_pred cCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeC------------CEEEEEEEecCCCeeEEEEEe
Q 001165 471 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG------------KIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 471 SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~------------~~lv~~~~~~~~~~~eLrly~ 537 (1134)
||||++||+|+.||.+ +||+.+++-.. .......-.+..+.|.+ ++++++ +.+..|++|+
T Consensus 497 s~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~-----~~dg~i~iw~ 569 (615)
T 1pgu_A 497 SPSETYIAAGDVMGKILLYDLQSREVKT--SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-----SLDTNIFIYS 569 (615)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEE--CCSCCCSSCEEEEEECCCC------CCSCCEEEEE-----ETTSCEEEEE
T ss_pred CCCCCEEEEcCCCCeEEEeeCCCCccee--EeecCCCCceeEEEEcCccccccccccCCCEEEEE-----cCCCcEEEEE
Confidence 9999999999999999 99998875432 11110223477788854 456665 3346799998
Q ss_pred CCCCCCcceeEEEec-CCcc--EEEEecCCEEEEEEcCCeEEEEEEE
Q 001165 538 RYHLDQSSLLCRKSL-LAKP--IVMDVYEDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 538 ~~~ld~~~~~~~~~l-~~~~--~~l~~~~d~llv~~~d~~i~l~~~~ 581 (1134)
..... ..+..... ..++ +.+++.+. ++....|+.+++|+++
T Consensus 570 ~~~~~--~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 570 VKRPM--KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp SSCTT--CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CCCCc--eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 85221 12222211 2223 45566777 7778899999999985
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-34 Score=386.27 Aligned_cols=498 Identities=12% Similarity=0.076 Sum_probs=338.2
Q ss_pred CCcee--EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE
Q 001165 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 20 ~~~~i--v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l 96 (1134)
|...+ ++|||||+++|+++ |++|+||+.. .+..+.... .+.+.+.+++|+|||++||+++.||+|++||+
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 44444 89999999999977 5689999997 333333332 24578999999999999999999999999999
Q ss_pred EecCcceecCCCCCCCcceeeEEEeecee------------------------eccccccceEE--EeeeCCCeEEEEec
Q 001165 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQ------------------------LPFAEKGLSVS--NIVSDNKHMLLGLS 150 (1134)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------------------------~~~~~~~~~V~--~~s~d~~~llv~t~ 150 (1134)
..+.......+|. ..+.++.|.++.. ..+.++...|. +++++++.+++++.
T Consensus 687 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 687 ATGKLVHTYDEHS---EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CCCceEEEEcCCC---CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 7543211122222 1234444443211 01223334444 56778899999999
Q ss_pred CCcEEEEecCCcccc-ceecc---------------------ccC-----------------------------CCcccc
Q 001165 151 DGSLYSISWKGEFYG-AFELV---------------------HSS-----------------------------NDSSVA 179 (1134)
Q Consensus 151 dg~v~~~~wd~~~~~-~~~~~---------------------~~~-----------------------------~~~~~i 179 (1134)
||.|.+|+....... ..... ..| .....+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 999998766432110 00000 000 000011
Q ss_pred ccccccCCCc-cccccCCCc---------ccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc----c
Q 001165 180 ALSHHFPSNG-LASVDTSGA---------FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL----A 245 (1134)
Q Consensus 180 ~~i~~~~~~~-l~s~~~~~~---------~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~----~ 245 (1134)
..+.++.++. +.++..++. .....+.+|...|.+++|+|+++.+++++.||.+.+|+........ .
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 1111222222 111211111 0112345788899999999999999999999999999874311000 0
Q ss_pred --------------------cee--c-----ccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 246 --------------------EFI--K-----IDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 246 --------------------~~~--~-----~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
... . .........+++++|+|+++++|+|+.||.|++|++.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~------------ 991 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP------------ 991 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT------------
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC------------
Confidence 000 0 0000123568999999999999999999999999998
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcce
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 378 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~ 378 (1134)
+++....+.+ |.+.|++++|+|||++|++|+.||.|++||+.++.... +.+| ...|.+++++|++ .
T Consensus 992 ---~~~~~~~~~~----h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~~~~~~~~~----~- 1057 (1249)
T 3sfz_A 992 ---NNRVFSSGVG----HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH-QETVKDFRLLQDS----R- 1057 (1249)
T ss_dssp ---TTSCEEECCC----CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCC-SSCEEEEEECSSS----E-
T ss_pred ---CCceeeeccc----CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecC-CCcEEEEEEcCCC----c-
Confidence 6666666665 99999999999999999999999999999999887653 3344 6789999999976 4
Q ss_pred EEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccc
Q 001165 379 LMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 452 (1134)
Q Consensus 379 l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~ 452 (1134)
+++++ ++++|+..++++.....+|...| +++++ ++.+++++.|+++++|++..+..
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~------------------ 1119 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP------------------ 1119 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC------------------
T ss_pred EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce------------------
Confidence 44444 99999999999988888998888 67777 88999999999999999866543
Q ss_pred ccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEE-eCCcc-----ceeeeEEEEEEeeCC--EEEEEE
Q 001165 453 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDIT-----QEQKIQSKGLLWLGK--IIVVCN 523 (1134)
Q Consensus 453 ~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~-F~~~~-----~e~~~~v~gl~W~~~--~lv~~~ 523 (1134)
...+.+|+.+|++++|||||++||+|+.||.+ +||+.+++... +.... ......+.++.|.++ +++++
T Consensus 1120 --~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~- 1196 (1249)
T 3sfz_A 1120 --LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA- 1196 (1249)
T ss_dssp --SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-
T ss_pred --eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-
Confidence 45677899999999999999999999999999 99998875321 10000 111123667888754 55554
Q ss_pred EecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEEecCCEEEEEEcCCeEEEEEE
Q 001165 524 YIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 580 (1134)
Q Consensus 524 ~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~~ 580 (1134)
+ ..+++|+...-........+.-+-..+.+++.+..+++...++.+.+|++
T Consensus 1197 ----~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1197 ----G--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp ----S--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred ----C--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 1 47999987411110011111111123567777788888899999999975
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=351.90 Aligned_cols=447 Identities=11% Similarity=0.121 Sum_probs=277.7
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
..++|+|||++||+++ |++|+||+.. ........ .+.+.+.+++|+| |++||+++.|++|+|||+..+.
T Consensus 21 ~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~-------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~- 90 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKL-------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK- 90 (902)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEECST-TCEEEEEC-------SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS-
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEEc-------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc-
Confidence 4489999999999987 6799999986 32222211 1346789999999 8899999999999999986431
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~ 181 (1134)
.+ ..+. . .......+++++++.+++|+.||.|++|+.+......+.+
T Consensus 91 ~~------------~~~~--~-------~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i------------ 137 (902)
T 2oaj_A 91 VL------------TTVF--V-------PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL------------ 137 (902)
T ss_dssp EE------------EEEE--C-------SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE------------
T ss_pred EE------------EEEc--C-------CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee------------
Confidence 11 1110 0 0112234567788999999999999987665432111100
Q ss_pred ccccCCCccccccCCCcccc-cccCCCcccEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccc-cceeccc-------
Q 001165 182 SHHFPSNGLASVDTSGAFVS-DHKFPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKID------- 251 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~-~~~~~~~~~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~------- 251 (1134)
+. . ... ....+|.+.|.+++|+|+ ++.+++++.||.+ +|++....... ...+...
T Consensus 138 -~~-----~--------~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 138 -DN-----L--------QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp -CC-----H--------HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred -cc-----c--------cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 00 0 000 123567889999999996 5789999999999 99986543211 1111000
Q ss_pred ---c-cCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccce-e-----------------------eeeeecc---
Q 001165 252 ---K-ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI-R-----------------------TVSLYDW--- 300 (1134)
Q Consensus 252 ---~-~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~-~-----------------------~l~l~~~--- 300 (1134)
. -.+...+++++|+|+|++||+|+.||+|++||+.+..... + .+.-..|
T Consensus 203 ~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~ 282 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE 282 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred ccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence 0 0012569999999999999999999999999997422100 0 0000001
Q ss_pred --Cc-ce--------------EEEEee-c-------------------------ccCCCCcCeEEEEECC----------
Q 001165 301 --GM-RE--------------VYYTFC-R-------------------------YSMDDTGPVSCIAWTP---------- 327 (1134)
Q Consensus 301 --~~-~~--------------~l~~l~-~-------------------------~~~~h~g~V~~l~fSP---------- 327 (1134)
+. +. .+..+. + ....|.+.|.++.+.|
T Consensus 283 ~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~ 362 (902)
T 2oaj_A 283 NNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCH 362 (902)
T ss_dssp SSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred CCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCC
Confidence 00 00 111110 0 0002345566666654
Q ss_pred CCCEEEEEECCCcEEEEecCCCeeEEE-----------------------------------------eccCCCCceeee
Q 001165 328 DNSAFAVGWKSRGLTVWSVSGCRLMST-----------------------------------------IRQISLSSISSP 366 (1134)
Q Consensus 328 DG~~Lasg~~Dg~I~vWdv~~~~l~~t-----------------------------------------l~~h~~~~V~sv 366 (1134)
|+..+++++.||+|++||+.++..... +.+| ...+.++
T Consensus 363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~-~~~v~sv 441 (902)
T 2oaj_A 363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGG-VRTKRQK 441 (902)
T ss_dssp SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCS-BCCCCCC
T ss_pred CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCC-cCCCCcc
Confidence 344677777788888888755432211 1122 2344556
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceE-----EEE-ec-----CCCccE--EEEec-CCEEEeeecCCcEEeeee
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-----YAI-EE-----GSSERV--LIFSF-GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l-----~~~-~~-----~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l 429 (1134)
+|+|++ +.+++|+ ++++||..++.+ +.. .. +|...| ++|++ ++.+++++.|+++++|++
T Consensus 442 ~~spdg----~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 442 LPAEYG----TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp CCCSEE----EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cccccC----cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence 667777 8899988 999999987642 111 11 787888 66777 999999999999999998
Q ss_pred eeCCCe-----------EEEe------ecCCCc-cc------c-ccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 430 IYGEDR-----------LLVV------QSEDTD-EL------K-ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 430 ~~~~~~-----------l~l~------~g~~~~-~~------~-w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
..+... .+-+ .+.+.. .+ . ....+....+.+|..+|++++||||| +||+|+.||
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~ 596 (902)
T 2oaj_A 518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG 596 (902)
T ss_dssp EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS
T ss_pred cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC
Confidence 765310 0000 000000 00 0 00112234667899999999999999 999999999
Q ss_pred eE-EEEccCCcEEEeCCc--cc-eeeeEEEEEEee-----CC-----EEEEEEEecCCCeeEEEEEeC
Q 001165 485 LI-LYDIRQKKWRVFGDI--TQ-EQKIQSKGLLWL-----GK-----IIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 485 ~i-lwd~~sg~Wk~F~~~--~~-e~~~~v~gl~W~-----~~-----~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.| +||+.++....-... .. .+.-.|..+.|. +| .++++ +.+..|++|+.
T Consensus 597 tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg-----s~D~tv~~wd~ 659 (902)
T 2oaj_A 597 SLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG-----TDMGEVITYKI 659 (902)
T ss_dssp EEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE-----ETTSEEEEEEE
T ss_pred cEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE-----ecCCcEEEEEE
Confidence 99 999987753210111 00 112237788888 65 45555 34578999986
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-31 Score=343.63 Aligned_cols=412 Identities=9% Similarity=0.003 Sum_probs=257.4
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
..++|+| |++||+++ |++|+|||.+.+ ..+..+. +.+.+.+++|+|||++||+++.||+|++||+.....
T Consensus 62 ~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-~~~~~~~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 62 KEMRFVK-GIYLVVINAKDTVYVLSLYSQ-KVLTTVF-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEEEEET-TTEEEEEETTCEEEEEETTTC-SEEEEEE-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEcC-CCEEEEEECcCeEEEEECCCC-cEEEEEc-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 3489999 88787765 679999999743 3333332 346789999999999999999999999999864311
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEE--EeeeC-CCeEEEEecCCcEEEEecCCcccccee-ccccCCCcc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFE-LVHSSNDSS 177 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s~d-~~~llv~t~dg~v~~~~wd~~~~~~~~-~~~~~~~~~ 177 (1134)
..+. ... +. .......++.+.|. +++++ +..+++|+.+|.+ +|+.... .... +..+
T Consensus 133 ~~~~-i~~----------~~-~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~--~~~~~~~~~----- 192 (902)
T 2oaj_A 133 SSFK-LDN----------LQ-KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN--EIKQSFIYE----- 192 (902)
T ss_dssp EEEE-ECC----------HH-HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT--EEEEEECCC-----
T ss_pred ccce-ecc----------cc-ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC--ceEEEEecc-----
Confidence 0000 000 00 00000112223343 34443 3578889999998 7655432 1110 0000
Q ss_pred ccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccce------eccc
Q 001165 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF------IKID 251 (1134)
Q Consensus 178 ~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~------~~~~ 251 (1134)
..+...... . .......|...|.+++|+|+++.+++++.||.+.+|+........... +.+.
T Consensus 193 ---~~~g~~~~~-------~--~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~ 260 (902)
T 2oaj_A 193 ---LPPFAPGGD-------F--SEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260 (902)
T ss_dssp ---BCTTCCCST-------T--CCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred ---cCCcCCCcc-------c--ccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence 000000000 0 001233566789999999999999999999999999986543211100 1000
Q ss_pred ------ccCCCCCeEEEEEC----CCC-CEEEEeeeC-----CeEEEEecccc---------------------------
Q 001165 252 ------KELGSGDAVCASIA----PEQ-QILAVGTRR-----GVVELYDLAES--------------------------- 288 (1134)
Q Consensus 252 ------~~~~~~~~~~va~s----pdg-~llAsG~~d-----g~V~lwd~~~~--------------------------- 288 (1134)
...+...+++++|+ |++ .++++|+.| +++++|++...
T Consensus 261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 340 (902)
T 2oaj_A 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP 340 (902)
T ss_dssp TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS
T ss_pred CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC
Confidence 00012357888884 543 567777665 26777774200
Q ss_pred -ccce----------------------------eeeeeeccCcceEEEE-------eec---------------------
Q 001165 289 -ASLI----------------------------RTVSLYDWGMREVYYT-------FCR--------------------- 311 (1134)
Q Consensus 289 -~~~~----------------------------~~l~l~~~~~~~~l~~-------l~~--------------------- 311 (1134)
.... ..+.+.+..++..... +.+
T Consensus 341 ~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 0000 0011111011111100 000
Q ss_pred ---------ccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeE----EE--ec-----cCCCCceeeeEEcCC
Q 001165 312 ---------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM----ST--IR-----QISLSSISSPIVKPN 371 (1134)
Q Consensus 312 ---------~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~----~t--l~-----~h~~~~V~sv~~sp~ 371 (1134)
...+|...|.+++|+|||+.||||+.||+|++||+.++.+. .. +. +| ...|++++|+|+
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h-~~~V~svafspd 499 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK-ELAVDKISFAAE 499 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS-SCCEEEEEEETT
T ss_pred HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC-CCceeEEEecCC
Confidence 01125555666777899999999999999999999876421 11 11 44 678999999999
Q ss_pred CCCCcceEEEcc---eeEEEeCCCc---------------------------------------------eEEEEecCCC
Q 001165 372 QDCKYEPLMSGT---SMMQWDEYGY---------------------------------------------RLYAIEEGSS 403 (1134)
Q Consensus 372 ~~~~~~~l~sgs---~i~~W~~~~~---------------------------------------------~l~~~~~~h~ 403 (1134)
+ ..+++|+ ++++|+..++ +++....+|.
T Consensus 500 g----~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~ 575 (902)
T 2oaj_A 500 T----LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK 575 (902)
T ss_dssp T----TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred C----CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC
Confidence 9 8999987 9999998765 3467778899
Q ss_pred ccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeec-cCCCceEEEEEc-----CCC
Q 001165 404 ERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAAS-----KDG 474 (1134)
Q Consensus 404 ~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~-~h~~~V~~va~S-----pdG 474 (1134)
+.| ++|++ | .+++++.|+++++||+..+. + +..+ + ...+. +|...|++++|| |||
T Consensus 576 ~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~--~-~~~~-----------~-~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 576 GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA--I-IYME-----------N-IREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp CSEEEEEECBTS-EEEEEETTSEEEEEETTTTE--E-EEEE-----------E-GGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe--E-EEEe-----------e-hhHhccccccceEEEEEEEEecCCCC
Confidence 999 56777 8 99999999999999963221 1 1100 0 12343 899999999999 886
Q ss_pred ---CEEEEEeCCCeE-EEEc---cCCcEE
Q 001165 475 ---MFLAVAGLHGLI-LYDI---RQKKWR 496 (1134)
Q Consensus 475 ---~~LAsgg~dG~i-lwd~---~sg~Wk 496 (1134)
++||+|+.||++ +||+ .+|++.
T Consensus 640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp SEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred CcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence 899999999999 9999 777764
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-31 Score=299.60 Aligned_cols=277 Identities=15% Similarity=0.181 Sum_probs=230.4
Q ss_pred cccceEEEeee------CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccc
Q 001165 130 EKGLSVSNIVS------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDH 203 (1134)
Q Consensus 130 ~~~~~V~~~s~------d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~ 203 (1134)
++...|.+++. +++.+++|+.||+|++|.++....... ..
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------------------------------~~ 75 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------------------------------WS 75 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------------------------EE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------------------------ee
Confidence 34445555442 356799999999999988764321110 12
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+.+|...|.+++|+|++..+++++.||++++|++...... ..+. .+...+.+++|+|++++||+|+.||+|++|
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~--~~~~----~~~~~~~~~~~spdg~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--KSID----AGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE----CCTTCCCCEEECTTSSEEEEECTTSEEEEE
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE--EEEe----CCCccEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 4578889999999999999999999999999998653321 1111 133567889999999999999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
++. +++...++.. |...|.+++|+|||++||+|+.||.|++||+.+++++.++.+| ...|
T Consensus 150 ~~~---------------~~~~~~~~~~----~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v 209 (321)
T 3ow8_A 150 GVE---------------SGKKEYSLDT----RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPI 209 (321)
T ss_dssp ETT---------------TCSEEEEEEC----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCC
T ss_pred EcC---------------CCceeEEecC----CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCce
Confidence 998 6666666666 8889999999999999999999999999999999999999887 6789
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEE
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~ 437 (1134)
.+++|+|++ +.+++|+ ++++||.+++++.....+|...| ++|++ ++.+++++.|+++++||+..+..
T Consensus 210 ~~l~~spd~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~--- 282 (321)
T 3ow8_A 210 RSLTFSPDS----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC--- 282 (321)
T ss_dssp CEEEECTTS----CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---
T ss_pred eEEEEcCCC----CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE---
Confidence 999999998 8898887 89999999999999999999988 55666 88999999999999999765432
Q ss_pred EeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 438 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
..++.+|..+|.+++|+|+|++|+++|.||.+ +||.
T Consensus 283 -----------------~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 283 -----------------VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -----------------EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred -----------------EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 45677899999999999999999999999999 9996
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.3e-31 Score=303.85 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=195.7
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
...|.+++|+|++ .+++++.||+|++|++............ ...|.+.|+|++|+|+|++||+|+.||+|++||+.
T Consensus 82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~--~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~- 157 (344)
T 4gqb_B 82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFC--KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA- 157 (344)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-
T ss_pred CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeecc--ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-
Confidence 4568999999985 6789999999999999765432211111 11245789999999999999999999999999999
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCeeEEEecc-CCCCceee
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISS 365 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~s 365 (1134)
+++.+.++.+ |.+.|++++|+|+|. .|++|+.||+|++||+.+++...++.. ++...+.+
T Consensus 158 --------------~~~~~~~~~~----h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 219 (344)
T 4gqb_B 158 --------------QQVVLSSYRA----HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTS 219 (344)
T ss_dssp --------------TTEEEEEECC----CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEE
T ss_pred --------------CCcEEEEEcC----cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecccee
Confidence 8888888888 999999999999985 789999999999999998888887754 22456899
Q ss_pred eEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-C-CEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 366 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~-k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
++|+|++. ..+++|+ ++++||.++++++....+|...| ++|++ + +.++|++.|+++++||+..++
T Consensus 220 ~~~~p~~~---~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----- 291 (344)
T 4gqb_B 220 LAWHPQQS---EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----- 291 (344)
T ss_dssp EEECSSCT---TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-----
T ss_pred eeecCCCC---cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-----
Confidence 99999652 5677776 89999999999999999999998 55666 5 578999999999999975543
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCC-EEEEEeCCCeE-EEEccCC
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~-~LAsgg~dG~i-lwd~~sg 493 (1134)
...+.+|..+|++++|||+|+ .||+||.||.| +|++.++
T Consensus 292 ----------------~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 292 ----------------LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ----------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred ----------------EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 234678999999999999986 57799999999 9999775
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-31 Score=308.53 Aligned_cols=242 Identities=14% Similarity=0.127 Sum_probs=191.4
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
++...|.+++|+|++++ ++++.||+|++|++............ ...+...++|++|+|++++||+|+.||+|++||+
T Consensus 92 ~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~--~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFA--KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp ECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEE--ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeec--cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 35567899999999765 56778999999998654322111111 1124578999999999999999999999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCeeEEEecc-CCCCce
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSI 363 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~l~~tl~~-h~~~~V 363 (1134)
. +++.+..+.+ |.+.|++++|+|++. .+++++.||+|++||+.+++....+.. .+...+
T Consensus 169 ~---------------~~~~~~~~~~----h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v 229 (357)
T 4g56_B 169 S---------------QKAVLKSYNA----HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIP 229 (357)
T ss_dssp T---------------TTEEEEEECC----CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCE
T ss_pred C---------------CCcEEEEEcC----CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccc
Confidence 9 7888888877 999999999999985 889999999999999988776665543 235679
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-C-CEEEeeecCCcEEeeeeeeCCCeE
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~-k~l~S~s~d~ti~~w~l~~~~~~l 436 (1134)
.+++|+|++. ..+++|+ .+++||+.++++.....+|...| ++|++ + +.+++++.|+++++||+..++.
T Consensus 230 ~~v~~sp~~~---~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~-- 304 (357)
T 4g56_B 230 TSVTWHPEKD---DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV-- 304 (357)
T ss_dssp EEEEECTTST---TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--
T ss_pred cchhhhhccc---ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--
Confidence 9999999852 5677765 89999999999888889999988 55666 4 5789999999999999754432
Q ss_pred EEeecCCCccccccccccceeeccCCCceEEEEEcC-CCCEEEEEeCCCeE-EEEccCC
Q 001165 437 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 437 ~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp-dG~~LAsgg~dG~i-lwd~~sg 493 (1134)
....+|..+|++++||| ||++||+||.||.| +|++.+.
T Consensus 305 -------------------~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 305 -------------------FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp -------------------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred -------------------eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 23458999999999998 89999999999999 9998653
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.98 E-value=5.6e-30 Score=294.90 Aligned_cols=309 Identities=12% Similarity=0.063 Sum_probs=215.8
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCCeEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHML 146 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~ll 146 (1134)
.+..++|+|||++||+++.||+|+||++......... ....++...| .+++++++.++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~--------------------~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS--------------------VLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE--------------------EECSSCSSCEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee--------------------eeccccCCcEEEEEECCCCCEEE
Confidence 7889999999999999999999999999753210000 0011222334 45667889999
Q ss_pred EEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE
Q 001165 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1134)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~ 226 (1134)
+++.||++.+|..+....... ..+.+|...|.+++|+|+++.++++
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~----------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~ 123 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECV----------------------------------TTLEGHENEVKSVAWAPSGNLLATC 123 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEE----------------------------------EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCcEEEEEccCCCeEEE----------------------------------EEccCCCCCceEEEEeCCCCEEEEE
Confidence 999999999876543211110 1245788899999999999999999
Q ss_pred EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcce--
Q 001165 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMRE-- 304 (1134)
Q Consensus 227 ~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~-- 304 (1134)
+.||++.+|++............ ..+...+.+++|+|++++||+|+.||+|++|+.. +++
T Consensus 124 s~D~~v~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~---------------~~~~~ 185 (345)
T 3fm0_A 124 SRDKSVWVWEVDEEDEYECVSVL---NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE---------------EDDWV 185 (345)
T ss_dssp ETTSCEEEEEECTTSCEEEEEEE---CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE---------------TTEEE
T ss_pred ECCCeEEEEECCCCCCeEEEEEe---cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec---------------CCCEE
Confidence 99999999998754321111110 1245779999999999999999999999999987 332
Q ss_pred EEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcce
Q 001165 305 VYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS 384 (1134)
Q Consensus 305 ~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~ 384 (1134)
...++.+ |.+.|++++|+|||++||+|+.||+|+||+..... . ...+... ..
T Consensus 186 ~~~~~~~----h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~-------~-~~~~~~~----------------~~ 237 (345)
T 3fm0_A 186 CCATLEG----HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG-------N-EQGVACS----------------GS 237 (345)
T ss_dssp EEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT-------C-TTCCCCC------------------
T ss_pred EEEEecC----CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC-------C-Cccceee----------------cc
Confidence 3445555 99999999999999999999999999999964221 0 0000000 00
Q ss_pred eEEEeCCCceEEEEecC-CCccEE--EEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc-eeec
Q 001165 385 MMQWDEYGYRLYAIEEG-SSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYI 459 (1134)
Q Consensus 385 i~~W~~~~~~l~~~~~~-h~~~v~--~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~-~~~~ 459 (1134)
.. ..+++....+ |...|. ++++ +..+++++.|+++++|+...+.... .+ ...+. ....
T Consensus 238 ~~-----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-------~~-----~~~~~~~~~~ 300 (345)
T 3fm0_A 238 DP-----SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-------QP-----TFSLTAHLHQ 300 (345)
T ss_dssp -C-----EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-------SC-----CEEEEEEETT
T ss_pred CC-----ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-------ee-----eEEEEeeecc
Confidence 00 1122333333 666774 4444 7788999999999999975433200 00 00001 1235
Q ss_pred cCCCceEEEEEcCCC-CEEEEEeCCCeE-EEEccCCc
Q 001165 460 SQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 460 ~h~~~V~~va~SpdG-~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
+|..+|++++|+|++ .+||+||.||.+ +|++.+++
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 899999999999998 599999999999 99998764
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.98 E-value=4.6e-30 Score=303.05 Aligned_cols=280 Identities=11% Similarity=0.082 Sum_probs=233.0
Q ss_pred ccccceEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCC
Q 001165 129 AEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (1134)
Q Consensus 129 ~~~~~~V~~--~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~ 206 (1134)
.++...|.+ +++++..+++|+.||+|.+|+++... .. ..+.+
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~----------------------------------~~l~~ 148 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FE----------------------------------RTLKG 148 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CC----------------------------------EEECC
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EE----------------------------------EEEec
Confidence 344455554 56778899999999999987654321 11 02456
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
|...|.+++|+|+++.+++++.||++.+|++....... .+. .+...+++++|+|+++.|++|+.||+|++||+.
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--~~~----~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMH----GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCC----CCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEc----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 88899999999999999999999999999986543211 111 244689999999999999999999999999999
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+++.+.++.+ |.+.|.+++|+|||++|++|+.||+|++||+.++.+..++.+| ...|.++
T Consensus 223 ---------------~~~~~~~~~~----h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~ 282 (410)
T 1vyh_C 223 ---------------TGYCVKTFTG----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECI 282 (410)
T ss_dssp ---------------TCCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEE
T ss_pred ---------------CCcEEEEEeC----CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEE
Confidence 7888888887 9999999999999999999999999999999999889999887 6789999
Q ss_pred EEcCCCCC----------------CcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcE
Q 001165 367 IVKPNQDC----------------KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMT 424 (1134)
Q Consensus 367 ~~sp~~~~----------------~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti 424 (1134)
+|+|++.. ....+++|+ ++++||..+++++....+|.+.| +.|++ ++.+++++.|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 99997410 025688877 89999999999999999999988 55666 8899999999999
Q ss_pred EeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 425 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 425 ~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
++||+..+.. ...+.+|..+|++++|+|+|.+||+||.||.+ +|++
T Consensus 363 ~vwd~~~~~~--------------------~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 363 RVWDYKNKRC--------------------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECCTTSCC--------------------CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEECCCCce--------------------EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999755443 45677899999999999999999999999999 9986
No 15
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.4e-28 Score=330.16 Aligned_cols=419 Identities=14% Similarity=0.105 Sum_probs=300.9
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCC
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~ 143 (1134)
|.+.+.+++|||||++||+++.||+|++|++.......... ++...| .+++++++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-----------------------~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-----------------------AHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----------------------CCSSCEEEEEECTTSS
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-----------------------cCCCCEEEEEEecCCC
Confidence 45678999999999999999999999999986542111111 122233 45667889
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC--CC
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP--MR 221 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~--~~ 221 (1134)
.+++++.||.|.+|++... .... .+.+|...|.++.|+|+ +.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~--~~~~----------------------------------~~~~~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATG--KLVH----------------------------------TYDEHSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp EEEEEETTSEEEEEETTTC--CEEE----------------------------------EEECCSSCEEEEEECSSSSCC
T ss_pred EEEEEeCCCeEEEEECCCC--ceEE----------------------------------EEcCCCCcEEEEEEecCCCce
Confidence 9999999999998765432 1110 23467888999999995 55
Q ss_pred eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccC
Q 001165 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~ 301 (1134)
.+++++.||.+.+|+........ ... .+...+++++|+|+++++++|+.||+|++||+...
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~~~--~~~----~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~------------- 775 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKECRN--TMF----GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA------------- 775 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSEEE--EEC----CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT-------------
T ss_pred EEEEEeCCCeEEEEECCCcchhh--eec----CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC-------------
Confidence 89999999999999986543211 111 24578999999999999999999999999999832
Q ss_pred cceEEEEeec---------ccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 302 MREVYYTFCR---------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 302 ~~~~l~~l~~---------~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
+...++.. ....+...|.+++|+|||+.+++++ ++.+.+||+.++.....+...+...|.+++|+|++
T Consensus 776 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~ 852 (1249)
T 3sfz_A 776 --NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD 852 (1249)
T ss_dssp --EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST
T ss_pred --cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC
Confidence 22222110 0112445799999999999999998 58999999998888888775447899999999998
Q ss_pred CCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCC------------
Q 001165 373 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED------------ 434 (1134)
Q Consensus 373 ~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~------------ 434 (1134)
..+++|+ .+++|+..+++......+|...| ++|++ ++.+++++.|+++++|++.....
T Consensus 853 ----~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 853 ----HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp ----TEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred ----CEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 7888776 89999999999999999999998 55666 88999999999999999542100
Q ss_pred ----------------eEEEe----------------------------ecCCCc-ccccc--ccccceeeccCCCceEE
Q 001165 435 ----------------RLLVV----------------------------QSEDTD-ELKIL--HLNLPVSYISQNWPVQH 467 (1134)
Q Consensus 435 ----------------~l~l~----------------------------~g~~~~-~~~w~--~~~~~~~~~~h~~~V~~ 467 (1134)
.+.+. .|.... ...|. .......+.+|..+|++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 00000 000000 11232 22233456789999999
Q ss_pred EEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCE-EEEEEEecCCCeeEEEEEeCCCCCCcc
Q 001165 468 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLDQSS 545 (1134)
Q Consensus 468 va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~-lv~~~~~~~~~~~eLrly~~~~ld~~~ 545 (1134)
++|||||++|++++.||.+ +||+.++....+. .+ .-.+..+.|.++. ++++ +.+..+++|+...- .
T Consensus 1009 l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~--~~~v~~~~~~~~~~l~~~-----~~dg~v~vwd~~~~---~ 1076 (1249)
T 3sfz_A 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--AH--QETVKDFRLLQDSRLLSW-----SFDGTVKVWNVITG---R 1076 (1249)
T ss_dssp EEECSSSSCEEEECSSSBEEEEETTTTEEECCB--CC--SSCEEEEEECSSSEEEEE-----ESSSEEEEEETTTT---C
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCceEEEe--cC--CCcEEEEEEcCCCcEEEE-----ECCCcEEEEECCCC---c
Confidence 9999999999999999999 9999998765332 12 2346677787654 4444 23467999988521 2
Q ss_pred eeEEEec---CCccEEEEecCCEEEEEEcCCeEEEEEEE
Q 001165 546 LLCRKSL---LAKPIVMDVYEDYILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 546 ~~~~~~l---~~~~~~l~~~~d~llv~~~d~~i~l~~~~ 581 (1134)
....... +-..+.+++.+..+++...|+.+++|++.
T Consensus 1077 ~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1077 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS
T ss_pred eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 2222221 12235667777788888899999999764
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=288.70 Aligned_cols=277 Identities=12% Similarity=0.140 Sum_probs=221.4
Q ss_pred hhcceeEEEEcCC----ceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEE--Eee
Q 001165 66 REGENLQAVWSPD----TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIV 139 (1134)
Q Consensus 66 ~~G~~~~v~wSPD----g~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s 139 (1134)
|.+.+.+++|+|+ +++||+++.||+|+||++....... .+. +.++...|. +++
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~---------------~~~------l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL---------------QWS------LEGHQLGVVSVDIS 89 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE---------------EEE------ECCCSSCEEEEEEC
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee---------------eee------eccCCCCEEEEEEC
Confidence 5678999999985 6689999999999999996431111 111 122333444 445
Q ss_pred eCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC
Q 001165 140 SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1134)
Q Consensus 140 ~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~ 219 (1134)
+++..+++++.||+|++|+.... .... .+..+...+.+++|+|+
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~--~~~~----------------------------------~~~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENG--KQIK----------------------------------SIDAGPVDAWTLAFSPD 133 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT--EEEE----------------------------------EEECCTTCCCCEEECTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCC--CEEE----------------------------------EEeCCCccEEEEEECCC
Confidence 67788999999999998654322 1110 11234456778999999
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeec
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~ 299 (1134)
++.+++++.||.+.+|+........ ... .+...+.+++|+|++++||+|+.||+|++||+.
T Consensus 134 g~~l~~g~~dg~v~i~~~~~~~~~~--~~~----~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~------------- 194 (321)
T 3ow8_A 134 SQYLATGTHVGKVNIFGVESGKKEY--SLD----TRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------------- 194 (321)
T ss_dssp SSEEEEECTTSEEEEEETTTCSEEE--EEE----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-------------
T ss_pred CCEEEEEcCCCcEEEEEcCCCceeE--Eec----CCCceEEEEEECCCCCEEEEEcCCCeEEEEECC-------------
Confidence 9999999999999999986543211 111 123578999999999999999999999999999
Q ss_pred cCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceE
Q 001165 300 WGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 379 (1134)
Q Consensus 300 ~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l 379 (1134)
+++.+.++.+ |.++|++++|+|||++|++|+.||+|++||+.++.+..++.+| ...|.+++|+|++ ..+
T Consensus 195 --~~~~~~~~~~----h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~----~~l 263 (321)
T 3ow8_A 195 --TGKLLHTLEG----HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDD----THF 263 (321)
T ss_dssp --TTEEEEEECC----CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SEE
T ss_pred --CCcEEEEEcc----cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCC----CEE
Confidence 7888888877 9999999999999999999999999999999998889999887 7789999999998 888
Q ss_pred EEcc---eeEEEeCCCceEEEEecCCCccEE--EEec-CCEEEeeecCCcEEeeee
Q 001165 380 MSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 380 ~sgs---~i~~W~~~~~~l~~~~~~h~~~v~--~~s~-~k~l~S~s~d~ti~~w~l 429 (1134)
++|+ ++++||+.+++++....+|...|. +|++ ++.+++++.|+++++||+
T Consensus 264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8887 899999999999999999999994 5555 889999999999999995
No 17
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=9.2e-29 Score=305.02 Aligned_cols=285 Identities=11% Similarity=0.060 Sum_probs=215.4
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccce-E--EEeee--
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS-V--SNIVS-- 140 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-V--~~~s~-- 140 (1134)
+.+.+.+++|||||++||+++ ++.|++|++..+..... .. ..+.++... | .++++
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~---------~~----------~~~~~h~~~~v~~~~~sp~~ 76 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVP---------PV----------VQFTGHGSSVVTTVKFSPIK 76 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSC---------SE----------EEECTTTTSCEEEEEECSST
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccc---------cc----------eEEecCCCceEEEEEECcCC
Confidence 357789999999999999998 78999999975310000 00 001122223 3 45677
Q ss_pred CCCeEEEEecCCcEEEEecCCc-cccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC
Q 001165 141 DNKHMLLGLSDGSLYSISWKGE-FYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1134)
Q Consensus 141 d~~~llv~t~dg~v~~~~wd~~-~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~ 219 (1134)
+++.+++++.||.|.+|+.+.. ....... .....+..+...|.+++|+|+
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~ 127 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEV-----------------------------NVKSEFQVLAGPISDISWDFE 127 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEE-----------------------------EEEEEEECCSSCEEEEEECTT
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccc-----------------------------cccchhhcccccEEEEEEeCC
Confidence 8899999999999998766321 0000000 000123356788999999999
Q ss_pred CCeEEEEEcC----CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceee
Q 001165 220 MRLLFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRT 294 (1134)
Q Consensus 220 ~~~la~~~sD----G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~ 294 (1134)
++.+++++.+ |.+++|+... ...... .+...+++++|+|+++ ++++|+.||+|++||+.
T Consensus 128 ~~~l~~~~~~~~~~~~v~~~d~~~----~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-------- 191 (615)
T 1pgu_A 128 GRRLCVVGEGRDNFGVFISWDSGN----SLGEVS----GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-------- 191 (615)
T ss_dssp SSEEEEEECCSSCSEEEEETTTCC----EEEECC----SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT--------
T ss_pred CCEEEEeccCCCCccEEEEEECCC----cceeee----cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC--------
Confidence 9999999988 7888887321 111111 2457899999999998 89999999999999998
Q ss_pred eeeeccCcceEEEEeecccCCCCc---CeEEEEECCC-CCEEEEEECCCcEEEEecCCCeeEEEe-c---cCCCCceeee
Q 001165 295 VSLYDWGMREVYYTFCRYSMDDTG---PVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI-R---QISLSSISSP 366 (1134)
Q Consensus 295 l~l~~~~~~~~l~~l~~~~~~h~g---~V~~l~fSPD-G~~Lasg~~Dg~I~vWdv~~~~l~~tl-~---~h~~~~V~sv 366 (1134)
+++.+.++.+ |.+ .|++++|+|| |++|++|+.||.|++||+.+++.+.++ . .| ...|.++
T Consensus 192 -------~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~ 259 (615)
T 1pgu_A 192 -------PFKFSASDRT----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV-QGGIFAL 259 (615)
T ss_dssp -------TBEEEEEECS----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-CSCEEEE
T ss_pred -------Ccceeeeecc----cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-CCceEEE
Confidence 7777777776 888 9999999999 999999999999999999999989888 4 45 7899999
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC----CccEEE--EecCCEEEeeecCCcEEeeeeeeC
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS----SERVLI--FSFGKCCLNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h----~~~v~~--~s~~k~l~S~s~d~ti~~w~l~~~ 432 (1134)
+|+ ++ ..+++++ .+++|+..++++......+ ...+.. ++.++.+++++.|+.+++|++..+
T Consensus 260 ~~~-~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 260 SWL-DS----QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp EES-SS----SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred EEc-CC----CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 999 77 7788776 8999999999988887665 244433 333889999999999999997653
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=296.98 Aligned_cols=374 Identities=12% Similarity=0.068 Sum_probs=251.5
Q ss_pred eEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCce-EEEEEeCCCEEEEEEE----EecCcceecCCCCCCCcce
Q 001165 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKV----QITEKSIQIGGKQPSGLFF 115 (1134)
Q Consensus 41 ~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~-~Lav~t~dg~l~lw~l----~~~~~~~~~~~~~~~~~~~ 115 (1134)
.+.+|+.++....+.. ..+.+.+.+++|+|||+ +||+++.||+|++|++ ..+....... ..
T Consensus 26 ~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~ 91 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKE-------IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-------II 91 (425)
T ss_dssp --------CCCEECEE-------EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-------EE
T ss_pred ccccccchhhhhheee-------eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-------cc
Confidence 4567887533222111 12347899999999999 9999999999999999 5432100000 00
Q ss_pred eeEEEeeceeeccccccceE--EEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccc
Q 001165 116 IKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (1134)
Q Consensus 116 ~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~ 193 (1134)
..+...........++...| .+++++++.+++++.+|.+.+|+.++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~---------------------------- 143 (425)
T 1r5m_A 92 AELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLN---------------------------- 143 (425)
T ss_dssp EEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE----------------------------
T ss_pred ccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee----------------------------
Confidence 00000000000011122334 456678889999999999998752222110
Q ss_pred cCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceeccc--------cc-CCCCCeEEEEE
Q 001165 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------KE-LGSGDAVCASI 264 (1134)
Q Consensus 194 ~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~va~ 264 (1134)
.+..|...|.+++|+|+++.+++++.||.+.+|++.............. .. .....+.+++|
T Consensus 144 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (425)
T 1r5m_A 144 ---------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214 (425)
T ss_dssp ---------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE
T ss_pred ---------eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE
Confidence 2345778899999999999999999999999999865332111000000 00 00112788999
Q ss_pred CCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEE
Q 001165 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 344 (1134)
Q Consensus 265 spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vW 344 (1134)
+|++ .+++|+.||.|++||+. +++.+..+.+ |.++|++++|+|+|++|++++.||.|++|
T Consensus 215 ~~~~-~~~~~~~~g~i~~~d~~---------------~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 215 VDDD-KFVIPGPKGAIFVYQIT---------------EKTPTGKLIG----HHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp EETT-EEEEECGGGCEEEEETT---------------CSSCSEEECC----CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCC-EEEEEcCCCeEEEEEcC---------------CCceeeeecc----CCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 9986 48888999999999998 5555556555 99999999999999999999999999999
Q ss_pred ecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEee
Q 001165 345 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNR 418 (1134)
Q Consensus 345 dv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~ 418 (1134)
|+.++.....+.+| ...|.+++|+|++ .+++++ .+++|+..+++++.....|...+ +++++ ++.++++
T Consensus 275 d~~~~~~~~~~~~~-~~~i~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 275 HGGNGNSQNCFYGH-SQSIVSASWVGDD-----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp CSSSBSCSEEECCC-SSCEEEEEEETTT-----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred ECCCCccceEecCC-CccEEEEEECCCC-----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 99998888888877 6789999999986 455544 99999999999999888888888 55666 8899999
Q ss_pred ecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCC--ceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 419 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 419 s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~--~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
+.|+.+++|++..+........+.......-...+....+.+|.. +|.+++|+|+|++||+|+.||.+ +|++.
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999987654211100010000000001112356677866 99999999999999999999999 99985
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-31 Score=306.90 Aligned_cols=351 Identities=11% Similarity=0.089 Sum_probs=252.3
Q ss_pred cceeEEEEcCCce-EEEEE----------eCCCEEEEEEEEecCcc--eecCCCCCCCcceeeEEEeeceeeccccccce
Q 001165 68 GENLQAVWSPDTK-LIAVV----------TSSLYLHIFKVQITEKS--IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS 134 (1134)
Q Consensus 68 G~~~~v~wSPDg~-~Lav~----------t~dg~l~lw~l~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 134 (1134)
..+.+++|||||+ +||++ +.||.|+||++...... .....+. ....
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~---------------------~~v~ 71 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVD---------------------SKFN 71 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCS---------------------SCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecC---------------------CceE
Confidence 3567899999998 89999 78899999999764311 1100010 0112
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
..++++++..+++++.+|.+++|+.+........ ...+.+|...|.++
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~--------------------------------~~~~~~h~~~v~~~ 119 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINS--------------------------------MARFSNHSSSVKTV 119 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE--------------------------------EEECCCSSSCCCEE
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccc--------------------------------hhhccCCccceEEE
Confidence 3455678889999999999998765542111100 01245678899999
Q ss_pred EEcCC-CCeEEEEEcCCeEEEEEeccCCcc----ccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEEEEecccc
Q 001165 215 ELCLP-MRLLFVLYSNGQLMSCSVSKKGLK----LAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 215 ~fsp~-~~~la~~~sDG~v~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~lwd~~~~ 288 (1134)
+|+|+ ++.+++++.||.+.+|++...... ...... ....+...+++++|+|+ +.++++|+.||+|++||+.
T Consensus 120 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-- 196 (416)
T 2pm9_A 120 KFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-- 196 (416)
T ss_dssp EECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT--
T ss_pred EEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC--
Confidence 99999 899999999999999998754310 000000 00124567899999999 7899999999999999998
Q ss_pred ccceeeeeeeccCcceEEEEeecc--cCCCCcCeEEEEECCCC-CEEEEEECCC---cEEEEecCCC-eeEEEec-cCCC
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRY--SMDDTGPVSCIAWTPDN-SAFAVGWKSR---GLTVWSVSGC-RLMSTIR-QISL 360 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~--~~~h~g~V~~l~fSPDG-~~Lasg~~Dg---~I~vWdv~~~-~l~~tl~-~h~~ 360 (1134)
+++.+.++... ..+|.+.|++++|+|+| +++++++.|+ .|++||+.++ ....++. +| .
T Consensus 197 -------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~ 262 (416)
T 2pm9_A 197 -------------AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-Q 262 (416)
T ss_dssp -------------TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-S
T ss_pred -------------CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-c
Confidence 55555555430 01237899999999998 6999999998 9999999875 5667777 66 7
Q ss_pred CceeeeEEcC-CCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-C-CEEEeeecCCcEEeeeeeeC
Q 001165 361 SSISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 361 ~~V~sv~~sp-~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~-k~l~S~s~d~ti~~w~l~~~ 432 (1134)
..|.+++|+| ++ ..+++|+ ++++|+..+++++....+|...| ++|++ + +.+++++.|+++++|++...
T Consensus 263 ~~v~~~~~s~~~~----~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 263 KGILSLDWCHQDE----HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SCEEEEEECSSCS----SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CceeEEEeCCCCC----CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 7899999999 76 7888876 89999999999999988998888 67777 5 79999999999999998665
Q ss_pred CCeEEEee----cCCCccccccc------------cccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 433 EDRLLVVQ----SEDTDELKILH------------LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 433 ~~~l~l~~----g~~~~~~~w~~------------~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
........ ....+...|.+ ..+ .....|..++.+++|||||++||+|+.||.| +|++.++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 339 TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 43211000 00000011111 011 1123467788999999999999999999999 9998764
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=5.8e-29 Score=283.17 Aligned_cols=291 Identities=12% Similarity=0.102 Sum_probs=220.6
Q ss_pred hhcceeEEEEcCCc-eEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCC
Q 001165 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDN 142 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg-~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~ 142 (1134)
|.+.+.+++|+|++ ++|++++.||+|++|++......... ++. .+.++...| .++++++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------~~~----------~~~~h~~~v~~~~~s~dg 77 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------PVR----------SFKGHSHIVQDCTLTADG 77 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------EEE----------EEECCSSCEEEEEECTTS
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------cce----------EEeCCcccEEEEEECCCC
Confidence 46789999999975 89999999999999999754211100 000 122233334 4567788
Q ss_pred CeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCe
Q 001165 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1134)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~ 222 (1134)
..+++++.||+|++|+.... .... .+.+|...|.+++|+|+++.
T Consensus 78 ~~l~s~s~D~~v~~wd~~~~--~~~~----------------------------------~~~~h~~~v~~~~~~~~~~~ 121 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVATG--ETYQ----------------------------------RFVGHKSDVMSVDIDKKASM 121 (319)
T ss_dssp SEEEEEETTSEEEEEETTTT--EEEE----------------------------------EEECCSSCEEEEEECTTSCE
T ss_pred CEEEEEeCCCEEEEEECCCC--CeeE----------------------------------EEccCCCcEEEEEEcCCCCE
Confidence 99999999999998654322 2110 24467889999999999999
Q ss_pred EEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC------CCEEEEeeeCCeEEEEeccccccceeeee
Q 001165 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE------QQILAVGTRRGVVELYDLAESASLIRTVS 296 (1134)
Q Consensus 223 la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd------g~llAsG~~dg~V~lwd~~~~~~~~~~l~ 296 (1134)
+++++.||++.+|++....... . ..+...+.+++|+|. +..+++|+.||+|++||+.
T Consensus 122 l~s~s~D~~i~vwd~~~~~~~~---~----~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---------- 184 (319)
T 3frx_A 122 IISGSRDKTIKVWTIKGQCLAT---L----LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---------- 184 (319)
T ss_dssp EEEEETTSCEEEEETTSCEEEE---E----CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT----------
T ss_pred EEEEeCCCeEEEEECCCCeEEE---E----eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC----------
Confidence 9999999999999986432211 1 123467889999995 4489999999999999998
Q ss_pred eeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCc
Q 001165 297 LYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 376 (1134)
Q Consensus 297 l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~ 376 (1134)
+++....+.+ |.++|++++|+|||++||+|+.||+|+|||+.+++++.++..+ ..|.+++|+|++
T Consensus 185 -----~~~~~~~~~~----h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~---- 249 (319)
T 3frx_A 185 -----QFQIEADFIG----HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNR---- 249 (319)
T ss_dssp -----TTEEEEEECC----CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSS----
T ss_pred -----cchhheeecC----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCC----
Confidence 6666677766 9999999999999999999999999999999999998888764 579999999998
Q ss_pred ceEEEcc--eeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccccc
Q 001165 377 EPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 454 (1134)
Q Consensus 377 ~~l~sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~ 454 (1134)
..++++. .+++|+.+...++.....+ .
T Consensus 250 ~~la~~~~~~i~v~~~~~~~~~~~~~~~-------------------------------~-------------------- 278 (319)
T 3frx_A 250 YWLAAATATGIKVFSLDPQYLVDDLRPE-------------------------------F-------------------- 278 (319)
T ss_dssp SEEEEEETTEEEEEEETTEEEEEEECCC-------------------------------C--------------------
T ss_pred CEEEEEcCCCcEEEEeCcCeeeeccCcc-------------------------------c--------------------
Confidence 6776654 6777776654433221110 0
Q ss_pred ceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 455 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 455 ~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
......|...+.+++|||||++||+|+.||.+ +||+.++
T Consensus 279 ~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 11122455678999999999999999999999 9999765
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=3e-29 Score=288.01 Aligned_cols=279 Identities=14% Similarity=0.129 Sum_probs=225.1
Q ss_pred cccccceEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccC
Q 001165 128 FAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1134)
Q Consensus 128 ~~~~~~~V~~--~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~ 205 (1134)
+.++...|.+ ++++++.+++++.||+|++|+.... .... .+.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~----------------------------------~~~ 94 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVH----------------------------------AIP 94 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEE----------------------------------EEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--Ccce----------------------------------Eee
Confidence 3444555654 5678889999999999998654321 1110 123
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
.+...|.+++|+|+++.+++++.||.+.+|++........ .......+...+.|++|+|++. +++|+.||+|++||+
T Consensus 95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~ 171 (340)
T 1got_B 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR--VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI 171 (340)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE--EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEET
T ss_pred cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce--eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEEC
Confidence 4667899999999999999999999999999865321110 0000112457789999999886 888999999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceee
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
. +++.+.++.+ |.+.|.+++|+|||++|++|+.||+|++||+.++.+..++.+| ...|++
T Consensus 172 ~---------------~~~~~~~~~~----h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~ 231 (340)
T 1got_B 172 E---------------TGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINA 231 (340)
T ss_dssp T---------------TTEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEE
T ss_pred C---------------CCcEEEEEcC----CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEE
Confidence 9 7888888877 9999999999999999999999999999999999999999887 678999
Q ss_pred eEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecC--CCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEE
Q 001165 366 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG--SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~--h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~ 437 (1134)
++|+|++ ..+++|+ ++++||..+++.+..... +...| ++|++ ++.+++++.|+++++||+..+..
T Consensus 232 v~~~p~~----~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~--- 304 (340)
T 1got_B 232 ICFFPNG----NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR--- 304 (340)
T ss_dssp EEECTTS----SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---
T ss_pred EEEcCCC----CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE---
Confidence 9999998 8888887 899999998887766532 22356 56777 89999999999999999765443
Q ss_pred EeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 438 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
...+.+|..+|.+++|+|||++||+||.||.+ +||
T Consensus 305 -----------------~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 -----------------AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 35677899999999999999999999999999 996
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=6.9e-30 Score=301.54 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=231.0
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|...|++++|+|+++.+++++.||++.+|+........ .+. .+...+++++|+|++++||+|+.||+|++
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--~l~----~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLK----GHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EEC----CCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--EEe----ccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 356889999999999999999999999999999986543221 111 24578999999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCc
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
||+. +++.+.++.+ |.+.|.+++|+|+|++|++|+.|++|++||+.++.++.++.+| ...
T Consensus 177 wd~~---------------~~~~~~~~~~----h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~ 236 (410)
T 1vyh_C 177 WDFQ---------------GFECIRTMHG----HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REW 236 (410)
T ss_dssp EETT---------------SSCEEECCCC----CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSC
T ss_pred EeCC---------------CCceeEEEcC----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-Ccc
Confidence 9998 6777777776 9999999999999999999999999999999999999999887 678
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEE--EEec---------------------CCEEE
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF---------------------GKCCL 416 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~--~~s~---------------------~k~l~ 416 (1134)
|.++.++|++ ..+++|+ ++++|+..++++.....+|...|. .|++ ++.++
T Consensus 237 v~~~~~~~~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 237 VRMVRPNQDG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp EEEEEECTTS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred EEEEEECCCC----CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 9999999998 8888877 899999999999988889988884 4444 45799
Q ss_pred eeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc-
Q 001165 417 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 494 (1134)
Q Consensus 417 S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~- 494 (1134)
+++.|+++++||+..+.. ...+.+|..+|++++|+|+|++|++||.||.+ +||+.+++
T Consensus 313 sgs~D~~i~iwd~~~~~~--------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMC--------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp EEETTSEEEEEETTTTEE--------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred EEeCCCeEEEEECCCCce--------------------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence 999999999999765443 45677899999999999999999999999999 99998764
Q ss_pred EEEeCCccceeeeEEEEEEeeCC--EEEEEEEecCCCeeEEEEEeC
Q 001165 495 WRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 495 Wk~F~~~~~e~~~~v~gl~W~~~--~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.+.+.. |+ -.|.++.|.++ ++++| +.+..|++|+.
T Consensus 373 ~~~~~~--h~--~~v~~l~~~~~~~~l~sg-----s~D~~i~vW~~ 409 (410)
T 1vyh_C 373 MKTLNA--HE--HFVTSLDFHKTAPYVVTG-----SVDQTVKVWEC 409 (410)
T ss_dssp CEEEEC--CS--SCEEEEEECSSSSCEEEE-----ETTSEEEEEC-
T ss_pred EEEEcC--CC--CcEEEEEEcCCCCEEEEE-----eCCCcEEEEeC
Confidence 233321 22 24778888754 66666 34567999853
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=3e-29 Score=283.34 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=221.2
Q ss_pred EEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEE
Q 001165 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1134)
Q Consensus 136 ~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~ 215 (1134)
.+|+|++..+++++.||+|++|+.+.. .... .+..+...|.++.
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~----------------------------------~~~~~~~~v~~~~ 62 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQ--VEVR----------------------------------SIQVTETPVRAGK 62 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTT--EEEE----------------------------------EEECCSSCEEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCC--ceeE----------------------------------EeeccCCcEEEEE
Confidence 456788999999999999998665432 1110 1335677899999
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
|+|+++.+++++.||++++|+........ ... .+...+++++|+|+++++|+|+.||+|++||+.
T Consensus 63 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~----~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~--------- 127 (304)
T 2ynn_A 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVV--DFE----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE--------- 127 (304)
T ss_dssp EEGGGTEEEEEETTSEEEEEETTTCCEEE--EEE----CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG---------
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCcEEE--EEe----CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC---------
Confidence 99999999999999999999986543211 111 245789999999999999999999999999998
Q ss_pred eeeccCcc-eEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCC
Q 001165 296 SLYDWGMR-EVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 373 (1134)
Q Consensus 296 ~l~~~~~~-~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~ 373 (1134)
++ .....+.+ |.+.|.+++|+| |+..||+|+.||+|++||+..+....++..++...+..+.++|..+
T Consensus 128 ------~~~~~~~~~~~----h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 128 ------NNWALEQTFEG----HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp ------GTTEEEEEECC----CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT
T ss_pred ------CCcchhhhhcc----cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC
Confidence 33 34445555 999999999999 7899999999999999999877666666655467899999987431
Q ss_pred CCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccc
Q 001165 374 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 447 (1134)
Q Consensus 374 ~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~ 447 (1134)
...+++|+ ++++||.++++++....+|...| ++|++ ++.++|++.|+++++||...+..
T Consensus 198 --~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~------------- 262 (304)
T 2ynn_A 198 --KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV------------- 262 (304)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-------------
T ss_pred --CCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-------------
Confidence 16788877 99999999999999999999988 56677 88999999999999999765443
Q ss_pred cccccccceeeccCCCceEEEEEcCCCC--EEEEEeCCCeEEEEccC
Q 001165 448 KILHLNLPVSYISQNWPVQHVAASKDGM--FLAVAGLHGLILYDIRQ 492 (1134)
Q Consensus 448 ~w~~~~~~~~~~~h~~~V~~va~SpdG~--~LAsgg~dG~ilwd~~s 492 (1134)
..++..|..++.+++++|+|+ ++|+|+.||.++|++..
T Consensus 263 -------~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 263 -------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp -------EEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred -------eeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 456677888999999999885 69999999988998764
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=4.4e-29 Score=282.79 Aligned_cols=320 Identities=15% Similarity=0.115 Sum_probs=243.1
Q ss_pred cceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEE
Q 001165 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv 147 (1134)
+.+.+++|||||+.+|++..++.+..|............+| .......+++++++.+++
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------------------~~~v~~~~~~~~~~~l~~ 68 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNH---------------------GEVVCAVTISNPTRHVYT 68 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECC---------------------SSCCCEEEECSSSSEEEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccC---------------------CCceEEEEEecCCcEEEE
Confidence 46789999999999999887775544422111010000001 011223456678888888
Q ss_pred EecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE
Q 001165 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (1134)
Q Consensus 148 ~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~ 227 (1134)
++ +|.+.+|+.+....... + ......++...|.+++|+|+++.+++++
T Consensus 69 ~~-dg~i~iw~~~~~~~~~~-----------~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 116 (337)
T 1gxr_A 69 GG-KGCVKVWDISHPGNKSP-----------V--------------------SQLDCLNRDNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp EC-BSEEEEEETTSTTCCSC-----------S--------------------EEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred cC-CCeEEEEECCCCCceee-----------e--------------------ecccccCCCCcEEEEEEcCCCCEEEEEc
Confidence 87 99999876654321110 0 0001235778899999999999999999
Q ss_pred cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE
Q 001165 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY 307 (1134)
Q Consensus 228 sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~ 307 (1134)
.||.+.+|+............. .+...+++++|+|+++++++|+.||.|++||+. +++.+.
T Consensus 117 ~d~~i~~~d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~---------------~~~~~~ 177 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIKAELT----SSAPACYALAISPDSKVCFSCCSDGNIAVWDLH---------------NQTLVR 177 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEE----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------------TTEEEE
T ss_pred CCCcEEEEECCCCCcceeeecc----cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC---------------CCceee
Confidence 9999999998754421111111 234678999999999999999999999999998 777777
Q ss_pred EeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---e
Q 001165 308 TFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 384 (1134)
Q Consensus 308 ~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~ 384 (1134)
.+.+ |.+.|.+++|+|||+.|++++.||.|++||+.+++....+.. ...+.+++|+|++ ..+++++ .
T Consensus 178 ~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~----~~l~~~~~~~~ 247 (337)
T 1gxr_A 178 QFQG----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTG----EWLAVGMESSN 247 (337)
T ss_dssp EECC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTS----SEEEEEETTSC
T ss_pred eeec----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCC----CEEEEEcCCCc
Confidence 7776 999999999999999999999999999999999888777753 5679999999998 7777765 8
Q ss_pred eEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccC
Q 001165 385 MMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 461 (1134)
Q Consensus 385 i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h 461 (1134)
+.+|+..+++... ..+|...+ +.+++ ++.+++++.|+.+++|++..+.. .....|
T Consensus 248 i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------------------~~~~~~ 305 (337)
T 1gxr_A 248 VEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------------IFQSKE 305 (337)
T ss_dssp EEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEEEEC
T ss_pred EEEEECCCCCeEE-EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE---------------------EEEecC
Confidence 9999999888654 46788888 55666 88999999999999999765443 123457
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 462 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 462 ~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
..+|.+++|+|+|++|++++.||.+ +|++.
T Consensus 306 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 7889999999999999999999999 99963
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=4.4e-29 Score=288.68 Aligned_cols=282 Identities=13% Similarity=0.123 Sum_probs=225.6
Q ss_pred cccccceEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccC
Q 001165 128 FAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (1134)
Q Consensus 128 ~~~~~~~V~~--~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~ 205 (1134)
+.++...|.+ +++++..+++|+.||++++|+ ........ ...
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd--~~~~~~~~----------------------------------~~~ 103 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD--SFTTNKEH----------------------------------AVT 103 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEE--TTTCCEEE----------------------------------EEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEE--CCCCCcce----------------------------------EEe
Confidence 3445555654 567888999999999999854 33211110 122
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
.+...|.+++|+|+++.+++++.||.+.+|++.................+...+.+++|+|+++.|++|+.||+|++||+
T Consensus 104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~ 183 (354)
T 2pbi_B 104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV 183 (354)
T ss_dssp CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeC
Confidence 34567889999999999999999999999988543211100000000124578899999999999999999999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
. +++.+.++.+ |.+.|.+++|+| +|++|++|+.||+|++||+.+++++.++.+| ...|
T Consensus 184 ~---------------~~~~~~~~~~----h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v 243 (354)
T 2pbi_B 184 E---------------SGQLLQSFHG----HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDV 243 (354)
T ss_dssp T---------------TCCEEEEEEC----CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCE
T ss_pred C---------------CCeEEEEEcC----CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCe
Confidence 9 7888888887 999999999988 5789999999999999999999999999887 7789
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCC--ccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS--ERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~--~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
++++|+|++ ..+++|+ ++++||..+++.......+. ..+ +.|++ ++.+++++.|+++++||+..+..
T Consensus 244 ~~v~~~p~~----~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~- 318 (354)
T 2pbi_B 244 NSVRYYPSG----DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR- 318 (354)
T ss_dssp EEEEECTTS----SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-
T ss_pred EEEEEeCCC----CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-
Confidence 999999998 8888887 89999999888776664432 234 66777 89999999999999999866543
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
...+.+|..+|++++|||||++||+|+.||.+ +|+
T Consensus 319 -------------------~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 319 -------------------VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------------------EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -------------------EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 34567899999999999999999999999999 995
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1e-29 Score=298.79 Aligned_cols=328 Identities=14% Similarity=0.089 Sum_probs=243.8
Q ss_pred eeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEe
Q 001165 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (1134)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t 149 (1134)
.+.++|+|||++|++++.||++++|++...........+ ....+..+.++++.+++++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA----------------------DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC----------------------CEEEEEEECSSSCEEEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC----------------------CceEEEEEecCCCEEEEEE
Confidence 457999999999999999999999998653211111000 0112345677889999999
Q ss_pred cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcC
Q 001165 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (1134)
Q Consensus 150 ~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sD 229 (1134)
.+|.+.+|+.+.. ... ..+.+|...|.+++|+|+++.+++++.|
T Consensus 117 ~dg~i~iwd~~~~--~~~----------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~d 160 (420)
T 3vl1_A 117 TEGDIKVLDSNFN--LQR----------------------------------EIDQAHVSEITKLKFFPSGEALISSSQD 160 (420)
T ss_dssp TTSCEEEECTTSC--EEE----------------------------------EETTSSSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCEEEEeCCCc--cee----------------------------------eecccccCccEEEEECCCCCEEEEEeCC
Confidence 9999988654322 111 0234678899999999999999999999
Q ss_pred CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEe
Q 001165 230 GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTF 309 (1134)
Q Consensus 230 G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l 309 (1134)
|.+.+|++....... .+. .+...+++++|+|++++|++|+.||+|++||+. +++.+.++
T Consensus 161 ~~i~iwd~~~~~~~~--~~~----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~---------------~~~~~~~~ 219 (420)
T 3vl1_A 161 MQLKIWSVKDGSNPR--TLI----GHRATVTDIAIIDRGRNVLSASLDGTIRLWECG---------------TGTTIHTF 219 (420)
T ss_dssp SEEEEEETTTCCCCE--EEE----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT---------------TTEEEEEE
T ss_pred CeEEEEeCCCCcCce--EEc----CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC---------------CCceeEEe
Confidence 999999986543211 111 245789999999999999999999999999998 44444444
Q ss_pred ecccCC---------------------CCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEE
Q 001165 310 CRYSMD---------------------DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 368 (1134)
Q Consensus 310 ~~~~~~---------------------h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~ 368 (1134)
.. ... |..+|.+++|+|||++|++|+.||.|++||+.++.....+..++...|.+++|
T Consensus 220 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 220 NR-KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 298 (420)
T ss_dssp CB-TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE
T ss_pred ec-CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE
Confidence 32 111 23556666678999999999999999999999888777776655789999999
Q ss_pred cCCCCCCcc-eEEEcc---eeEEEeCCCce-EEEEecC-CCccE--EEEecCCEEEeeecCCcEEeeeeeeCCCeEEEee
Q 001165 369 KPNQDCKYE-PLMSGT---SMMQWDEYGYR-LYAIEEG-SSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 369 sp~~~~~~~-~l~sgs---~i~~W~~~~~~-l~~~~~~-h~~~v--~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~ 440 (1134)
+|++ . .+++|+ .+++|+..+++ ++....+ |...+ +.++.++.+++++.|+++++|++........+
T Consensus 299 ~~~~----~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-- 372 (420)
T 3vl1_A 299 DGNN----ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-- 372 (420)
T ss_dssp CSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE--
T ss_pred eCCC----CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc--
Confidence 9998 6 788776 89999998764 3444444 55566 33334889999999999999998664331100
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEcCCCC---EEEEEeCCCeE-EEEccC
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM---FLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~---~LAsgg~dG~i-lwd~~s 492 (1134)
.....+..+.+|...|.+++|+|||+ .++++|.+|.+ +|++..
T Consensus 373 ---------~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 373 ---------IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ---------ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ---------eeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 01122445678889999999999999 78888889999 999864
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.8e-29 Score=283.06 Aligned_cols=296 Identities=14% Similarity=0.142 Sum_probs=213.4
Q ss_pred ccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCc
Q 001165 129 AEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (1134)
Q Consensus 129 ~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~ 208 (1134)
.++...|.++...++.+++++.||.|++|+.......... ......|.
T Consensus 11 ~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~--------------------------------~~~~~~h~ 58 (330)
T 2hes_X 11 KLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID--------------------------------VLDETAHK 58 (330)
T ss_dssp ECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE--------------------------------EECTTCCC
T ss_pred ccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE--------------------------------EEecCCcc
Confidence 3455678888777778999999999998765432111000 00012378
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc--ccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK--LAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..|.+++|+|+++.+++++.||++.+|+....... ....... ...+...+++++|+|++++||+|+.||+|++||+.
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 89999999999999999999999999998532110 0001100 01245789999999999999999999999999995
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC--eeEEEeccCCCCcee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSIS 364 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~--~l~~tl~~h~~~~V~ 364 (1134)
.... ..+.+.++.+ |.+.|++++|+|||++|++|+.|++|++||..++ .++.++.+| ...|.
T Consensus 138 ~~~~-----------~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~ 201 (330)
T 2hes_X 138 ESGE-----------EYECISVLQE----HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVW 201 (330)
T ss_dssp TTCC-----------CCEEEEEECC----CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEE
T ss_pred CCCC-----------CeEEEEEecc----CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEE
Confidence 2211 2244555666 9999999999999999999999999999998765 577888887 77899
Q ss_pred eeEEcCCCCCCcceEEEcc---eeEEEeCCCc--------eEEEEecC-CCccEEE--EecCCEEEeeecCCcEEeeeee
Q 001165 365 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------RLYAIEEG-SSERVLI--FSFGKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~--------~l~~~~~~-h~~~v~~--~s~~k~l~S~s~d~ti~~w~l~ 430 (1134)
+++|+|++. ...+++|+ ++++|+..++ .+.....+ |...|.. ++++..+++++.|+++++|+..
T Consensus 202 ~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 202 SSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEECCSSS--SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred EEEecCCCC--eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence 999999831 15678876 8999998654 34444444 8888854 4456789999999999999976
Q ss_pred eCCCeEEEeecCCCccccccccccceeeccCCC-ceEEEEEcC--CCCEEEEEeCCCeE-EEEccC
Q 001165 431 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-PVQHVAASK--DGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 431 ~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~-~V~~va~Sp--dG~~LAsgg~dG~i-lwd~~s 492 (1134)
.++.+. ......+|.. .|.+++|+| +|++||+||.||.+ +||+.+
T Consensus 280 ~~~~~~-----------------~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 280 DGEWKV-----------------FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTEEEE-----------------EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCceEE-----------------EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 443111 0122346776 899999999 79999999999999 999864
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=8.4e-30 Score=297.49 Aligned_cols=303 Identities=14% Similarity=0.140 Sum_probs=218.5
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
|.+.+.+++|+|||++||+++.||+|+|||+...........|.. .....+++++++.+
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~---------------------~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP---------------------WVMECAFAPNGQSV 123 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT---------------------TCCCCEECTTSSEE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC---------------------CEEEEEECCCCCEE
Confidence 467899999999999999999999999999864321111111111 11224677889999
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC-CeEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLF 224 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~-~~la 224 (1134)
++|+.|+.+.+|........... ......+.+|.+.|.++.|+|+. ..++
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGN-----------------------------MPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCS-----------------------------STTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred EEeeCCCcEEEEECCCCccccCC-----------------------------ccceeeccCCCcceEEEEEecCCCCEEE
Confidence 99999999998766532211000 00111356788899999999975 5799
Q ss_pred EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
+++.||++.+|++............ ....+...+.+++|+| ++.++++|+.||+|++||+.. .+
T Consensus 175 s~s~D~~i~~wd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~--------------~~ 239 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI--------------TS 239 (380)
T ss_dssp EECTTSCEEEECTTTCCEEEEECCC-SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT--------------TC
T ss_pred EECCCCcEEEEEcCCCcEEEEeecc-cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC--------------CC
Confidence 9999999999998654321110000 0012457899999987 889999999999999999972 23
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC------ceeeeEEcCCCCCCcc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS------SISSPIVKPNQDCKYE 377 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~------~V~sv~~sp~~~~~~~ 377 (1134)
+.+.++.+ |.+.|++++|+|||++|++|+.||+|++||+.++..+.++..+... .|++
T Consensus 240 ~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~------------ 303 (380)
T 3iz6_a 240 RAVRTYHG----HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS------------ 303 (380)
T ss_dssp CCCEEECC----CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE------------
T ss_pred cceEEECC----cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE------------
Confidence 44455555 9999999999999999999999999999999998888777553110 1222
Q ss_pred eEEEcceeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccce
Q 001165 378 PLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 456 (1134)
Q Consensus 378 ~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~ 456 (1134)
++|++ ++.+++++.|+++++||...++... .+..
T Consensus 304 -----------------------------~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----------------~~~~ 338 (380)
T 3iz6_a 304 -----------------------------VAFSISGRLLFAGYSNGDCYVWDTLLAEMVL----------------NLGT 338 (380)
T ss_dssp -----------------------------EEECSSSSEEEEECTTSCEEEEETTTCCEEE----------------EECC
T ss_pred -----------------------------EEECCCCCEEEEEECCCCEEEEECCCCceEE----------------EEec
Confidence 34444 5667788888888888865443310 0011
Q ss_pred eeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 457 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 457 ~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
...+|..+|++++|||||++||+||.||.+ +|++.+++
T Consensus 339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 225789999999999999999999999999 99987653
No 29
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=6.8e-29 Score=285.09 Aligned_cols=280 Identities=15% Similarity=0.145 Sum_probs=221.7
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
|.+.+.+++|+|||++||+++.||+|++||+...........+ .......+++++++.+
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~---------------------~~~v~~~~~s~~~~~l 112 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR---------------------SSWVMTCAYAPSGNYV 112 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS---------------------SSCEEEEEECTTSSEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC---------------------CccEEEEEECCCCCEE
Confidence 4578999999999999999999999999998543211111111 1112234677888999
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~ 225 (1134)
++++.||.+.+|.......... ....+.+|.+.|.++.|++++. +++
T Consensus 113 ~s~~~d~~v~iw~~~~~~~~~~--------------------------------~~~~~~~h~~~v~~~~~~~~~~-l~s 159 (340)
T 1got_B 113 ACGGLDNICSIYNLKTREGNVR--------------------------------VSRELAGHTGYLSCCRFLDDNQ-IVT 159 (340)
T ss_dssp EEEETTCEEEEEETTTCSBSCE--------------------------------EEEEEECCSSCEEEEEEEETTE-EEE
T ss_pred EEEeCCCeEEEEECccCCCcce--------------------------------eEEEecCCCccEEEEEECCCCc-EEE
Confidence 9999999999876543211100 0012446788999999998876 788
Q ss_pred EEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceE
Q 001165 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREV 305 (1134)
Q Consensus 226 ~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~ 305 (1134)
++.||++.+|++....... .+. .+...+++++|+|+++++++|+.||+|++||+. +++.
T Consensus 160 ~s~d~~i~~wd~~~~~~~~--~~~----~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~---------------~~~~ 218 (340)
T 1got_B 160 SSGDTTCALWDIETGQQTT--TFT----GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR---------------EGMC 218 (340)
T ss_dssp EETTSCEEEEETTTTEEEE--EEC----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------------TCSE
T ss_pred EECCCcEEEEECCCCcEEE--EEc----CCCCceEEEEECCCCCEEEEEeCCCcEEEEECC---------------CCee
Confidence 9999999999986543211 111 245789999999999999999999999999998 6777
Q ss_pred EEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC-CCCceeeeEEcCCCCCCcceEEEcc-
Q 001165 306 YYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT- 383 (1134)
Q Consensus 306 l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~sv~~sp~~~~~~~~l~sgs- 383 (1134)
..++.+ |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++..+ ....|.+++|+|++ ..+++|+
T Consensus 219 ~~~~~~----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~g~~ 290 (340)
T 1got_B 219 RQTFTG----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG----RLLLAGYD 290 (340)
T ss_dssp EEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS----SEEEEEET
T ss_pred EEEEcC----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC----CEEEEECC
Confidence 777777 9999999999999999999999999999999988877776542 23479999999999 8888877
Q ss_pred --eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeee
Q 001165 384 --SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 384 --~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~ 428 (1134)
.+++||..+++......+|...| ++|++ ++.++|++.|+++++|+
T Consensus 291 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 89999999999988899999999 45556 88999999999999996
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=8.7e-29 Score=279.56 Aligned_cols=243 Identities=9% Similarity=0.052 Sum_probs=202.8
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|...|.+++|+|+++.+++++.||++.+|+....... ..+. .+...+.+++|+|++++|++|+.||+|++
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~----~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQ----VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE----CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--EEee----ccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 35578889999999999999999999999999998653321 1111 23467899999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC-eeEEEeccCCCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLS 361 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~-~l~~tl~~h~~~ 361 (1134)
||+. +++.+.++.+ |.+.|++++|+|+|++|++|+.||+|++||+.++ .+..++.+| ..
T Consensus 82 wd~~---------------~~~~~~~~~~----h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~ 141 (304)
T 2ynn_A 82 FNYN---------------TGEKVVDFEA----HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EH 141 (304)
T ss_dssp EETT---------------TCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CS
T ss_pred EECC---------------CCcEEEEEeC----CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CC
Confidence 9999 7888888887 9999999999999999999999999999999766 566778877 77
Q ss_pred ceeeeEEcCC-CCCCcceEEEcc---eeEEEeCCCceEEEE-ecCCCccE--EEEec---CCEEEeeecCCcEEeeeeee
Q 001165 362 SISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERV--LIFSF---GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 362 ~V~sv~~sp~-~~~~~~~l~sgs---~i~~W~~~~~~l~~~-~~~h~~~v--~~~s~---~k~l~S~s~d~ti~~w~l~~ 431 (1134)
.|.+++|+|+ + ..+++|+ ++++||......... ..+|...+ +.+.+ ++.+++++.|+++++||+..
T Consensus 142 ~v~~v~~~p~~~----~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 142 FVMCVAFNPKDP----STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CEEEEEECTTCT----TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred cEEEEEECCCCC----CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 8999999994 4 6788877 999999976654333 34555555 45554 56899999999999999765
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W 495 (1134)
+.. ..++.+|..+|.+++|+|++++||+|+.||.+ +||+.+++.
T Consensus 218 ~~~--------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 218 KSC--------------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp TEE--------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred Ccc--------------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 432 45678999999999999999999999999999 999988754
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-28 Score=278.60 Aligned_cols=297 Identities=15% Similarity=0.224 Sum_probs=215.3
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+.+|...|.+++|+|+ .+++++.||++++|++..........+.. -.+...+.+++|+|++++||+|+.||+|+||
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDE--TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECT--TCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEec--CCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4578899999999998 89999999999999986532111111100 0145679999999999999999999999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC-C---CeeEEEeccCC
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-G---CRLMSTIRQIS 359 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~---~~l~~tl~~h~ 359 (1134)
++....... ...+.+.++.+ |.++|++++|+|||++||+|+.|++|++||+. + .+++.++.+|
T Consensus 86 ~~~~~~~~~--------~~~~~~~~~~~----h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h- 152 (330)
T 2hes_X 86 AKEESADRT--------FEMDLLAIIEG----HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH- 152 (330)
T ss_dssp EC---------------CCCEEEEEEC--------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC-
T ss_pred EcccCcCcc--------ccceeEEEEcC----CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC-
Confidence 986321000 02345566666 99999999999999999999999999999994 2 2567778877
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc--eEEEEecCCCccEEE--Eec---CCEEEeeecCCcEEeeee
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLI--FSF---GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~--~l~~~~~~h~~~v~~--~s~---~k~l~S~s~d~ti~~w~l 429 (1134)
...|.+++|+|++ ..+++|+ ++++|+..++ +++....+|...|.. |++ +..+++++.|+++++|++
T Consensus 153 ~~~v~~v~~~p~~----~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 153 SQDVKHVIWHPSE----ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp SSCEEEEEECSSS----SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred CCceEEEEECCCC----CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 7789999999998 8899887 8999998765 677888899999954 444 347899999999999998
Q ss_pred eeCCCeEEEeecCCCccccccccccceeecc-CCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceee-
Q 001165 430 IYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK- 506 (1134)
Q Consensus 430 ~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~-h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~- 506 (1134)
..+... ....| .....+.+ |..+|.+++|++++ +||+||.||.+ +|+..++.|+.+........
T Consensus 229 ~~~~~~---------~~~~~---~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~ 295 (330)
T 2hes_X 229 MGDDED---------DQQEW---VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV 295 (330)
T ss_dssp EEECTT---------SCEEE---EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT
T ss_pred cCCCcc---------cccee---EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc
Confidence 654320 00001 11223333 88999999999766 89999999999 99999998865432211111
Q ss_pred eEEEEEEeeC----CEEEEEEEecCCCeeEEEEEeCC
Q 001165 507 IQSKGLLWLG----KIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 507 ~~v~gl~W~~----~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
..+..+.|.+ +.+++| +.+..|++|+.+
T Consensus 296 ~~v~~v~~~~~~~~~~las~-----s~Dg~v~~W~~~ 327 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATG-----GDDGIVNFWSLE 327 (330)
T ss_dssp SCEEEEEEC-----CCEEEE-----ETTSEEEEEEC-
T ss_pred ceEEEEEEecCCCceEEEEe-----cCCCcEEEEEec
Confidence 2466777864 356666 345679999763
No 32
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=4.7e-28 Score=280.02 Aligned_cols=283 Identities=13% Similarity=0.107 Sum_probs=223.5
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
|.+.+.+++|+|||++||+++.||+|+|||........... .........+++|++..+
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---------------------MPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------------------CSSSCCCEEEECTTSSEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---------------------cCCCCEEEEEECCCCCEE
Confidence 45679999999999999999999999999975432111110 001112345778899999
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~ 225 (1134)
++++.|+.+.+|.+......... .....+..|...|.++.|+|+++.+++
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t 171 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMA------------------------------AKKKSVAMHTNYLSACSFTNSDMQILT 171 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSG------------------------------GGCEEEEECSSCEEEEEECSSSSEEEE
T ss_pred EEeeCCCCEEEEEEecccccccc------------------------------ccceeeeccCCcEEEEEEeCCCCEEEE
Confidence 99999999998766532111100 000123467889999999999999999
Q ss_pred EEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 226 ~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
++.||++.+|++....... .+. .+...+.+++|+| +++++++|+.||+|++||+. ++
T Consensus 172 ~s~D~~v~lwd~~~~~~~~--~~~----~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~---------------~~ 230 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQLLQ--SFH----GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR---------------SG 230 (354)
T ss_dssp EETTSEEEEEETTTCCEEE--EEE----CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT---------------TC
T ss_pred EeCCCcEEEEeCCCCeEEE--EEc----CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC---------------CC
Confidence 9999999999986543211 111 2446788999988 57899999999999999999 77
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC-CCCceeeeEEcCCCCCCcceEEEc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSG 382 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h-~~~~V~sv~~sp~~~~~~~~l~sg 382 (1134)
+.+.++.+ |.+.|++++|+|+|++||+|+.|++|++||+..++.+..+..+ ....+++++|+|++ ..+++|
T Consensus 231 ~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g----~~l~~g 302 (354)
T 2pbi_B 231 QCVQAFET----HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG----RLLFAG 302 (354)
T ss_dssp CEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS----SEEEEE
T ss_pred cEEEEecC----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC----CEEEEE
Confidence 77777777 9999999999999999999999999999999988777776543 23468999999999 888887
Q ss_pred c---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeee
Q 001165 383 T---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 383 s---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~ 428 (1134)
+ ++++||..+++.+....+|.+.| ++|++ ++.+++++.|+++++|+
T Consensus 303 ~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 303 YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 6 89999999888888889999999 56666 89999999999999995
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=3.9e-28 Score=279.84 Aligned_cols=284 Identities=12% Similarity=0.040 Sum_probs=209.0
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccC-----CccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-----GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
.+...|.+++|+|+|+++++++ |+++++|+.... ..............+...+++++|+|++ .+++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4567899999999999888765 666666653210 0000000000001123568999999996 57799999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 360 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~ 360 (1134)
+|||++ +++.+..+.....+|.+.|++|+|+|||++||+|+.||+|++||+.+++++.++.+| .
T Consensus 106 ~lWd~~---------------~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~ 169 (344)
T 4gqb_B 106 ELWELD---------------ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-A 169 (344)
T ss_dssp EEEEEC---------------TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-S
T ss_pred EEEecc---------------CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-C
Confidence 999998 333222221111239999999999999999999999999999999999999999988 7
Q ss_pred CceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec--CCCccE--EEEec--CCEEEeeecCCcEEeeeeee
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV--LIFSF--GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~--~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~l~~ 431 (1134)
..|++++|+|++. ..+++|+ ++++||.++++...... .|...+ +++++ ++.+++++.|+++++||+..
T Consensus 170 ~~V~~~~~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 170 AQVTCVAASPHKD---SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp SCEEEEEECSSCT---TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred CceEEEEecCCCC---CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 8999999999872 3567776 89999999988776653 233344 55666 56789999999999999876
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCC-CEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEE
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS 509 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG-~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v 509 (1134)
++. ..++.+|..+|++++||||| ++||+|+.||.| +||+.+++...+ ..|+ -.|
T Consensus 247 ~~~--------------------~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H~--~~V 302 (344)
T 4gqb_B 247 TSC--------------------VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAHR--DFV 302 (344)
T ss_dssp --C--------------------CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCCS--SCE
T ss_pred CcE--------------------EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCCC--CCE
Confidence 543 56788999999999999998 589999999999 999998864433 2233 247
Q ss_pred EEEEeeC--CEEE-EEEEecCCCeeEEEEEeCC
Q 001165 510 KGLLWLG--KIIV-VCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 510 ~gl~W~~--~~lv-~~~~~~~~~~~eLrly~~~ 539 (1134)
.++.|.+ +.++ +| +.+..|++|...
T Consensus 303 ~~v~~sp~~~~llas~-----s~D~~v~~w~v~ 330 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTV-----GWDHQVVHHVVP 330 (344)
T ss_dssp EEEEECSSSTTEEEEE-----ETTSCEEEEECC
T ss_pred EEEEEeCCCCeEEEEE-----cCCCeEEEEECC
Confidence 7889963 3444 45 244678999763
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.4e-27 Score=271.28 Aligned_cols=295 Identities=17% Similarity=0.160 Sum_probs=216.9
Q ss_pred hhcceeEEEEcCC-ceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCC
Q 001165 66 REGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDN 142 (1134)
Q Consensus 66 ~~G~~~~v~wSPD-g~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~ 142 (1134)
|.|.+++|+|+|| +++||+++.||+|+|||+......... +.. .+.++...| .++++++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------~~~----------~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------PQR----------ALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------EEE----------EECCCSSCEEEEEECTTS
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------eeE----------EEeCCCCCEEEEEECCCC
Confidence 5678999999998 689999999999999999754211100 000 112223334 4567788
Q ss_pred CeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCe
Q 001165 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1134)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~ 222 (1134)
+.+++++.||.+..|......... ....+...+..+.++++++.
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~ 142 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTR------------------------------------RFVGHTKDVLSVAFSSDNRQ 142 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE------------------------------------EEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEcccccceEEeecccceee------------------------------------eecCCCCceeEEEEeecCcc
Confidence 999999999999876554332111 11234556778899999999
Q ss_pred EEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC--CEEEEeeeCCeEEEEeccccccceeeeeeecc
Q 001165 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1134)
Q Consensus 223 la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg--~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~ 300 (1134)
+++++.||.+.+|+......... . ...+...+.+++|++++ .++++|+.|++|++||+.
T Consensus 143 l~s~s~d~~~~~~d~~~~~~~~~---~--~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-------------- 203 (340)
T 4aow_A 143 IVSGSRDKTIKLWNTLGVCKYTV---Q--DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-------------- 203 (340)
T ss_dssp EEEEETTSCEEEECTTSCEEEEE---C--SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT--------------
T ss_pred ceeecCCCeEEEEEeCCCceEEE---E--eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC--------------
Confidence 99999999999998754322111 0 11234678899998865 578999999999999999
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEE
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
+++.+.++.+ |.++|++++|+|||++|++|+.||.|++||+.+...+..+..+ ..|.++.++|++ ..++
T Consensus 204 -~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~----~~~~ 272 (340)
T 4aow_A 204 -NCKLKTNHIG----HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNR----YWLC 272 (340)
T ss_dssp -TTEEEEEECC----CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSS----SEEE
T ss_pred -CCceeeEecC----CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCC----ceee
Confidence 7777777777 9999999999999999999999999999999999888888764 578889998876 4444
Q ss_pred Ecc--eeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceee
Q 001165 381 SGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 458 (1134)
Q Consensus 381 sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~ 458 (1134)
++. .+++|+.+++.++.....+ . .....
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~-------------------------------~-------------------~~~~~ 302 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQE-------------------------------V-------------------ISTSS 302 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC--------------------------------------------------------
T ss_pred ccCCCEEEEEECCCCeEEEecccc-------------------------------c-------------------eeeec
Confidence 433 7778887765554332210 0 01223
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 459 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 459 ~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
.+|..+|++++|||||++||+||.||.| +||+.+|.
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 4678889999999999999999999999 99999873
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.7e-27 Score=268.96 Aligned_cols=277 Identities=16% Similarity=0.138 Sum_probs=226.3
Q ss_pred cccceEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCC
Q 001165 130 EKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1134)
Q Consensus 130 ~~~~~V~--~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~ 207 (1134)
++...|. +++++++.+++++.||.+++|..... ... ..+.+|
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~----------------------------------~~~~~h 64 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFE----------------------------------KTISGH 64 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEE----------------------------------EEECCC
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccc----------------------------------hhhccC
Confidence 3444454 45678889999999999998654322 111 023467
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
...|.+++|+|+++.+++++.||.+.+|++....... .+. .+...+.+++|+|+++++++|+.||+|++||+.
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~- 137 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK- 137 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEE----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE--EEc----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Confidence 7889999999999999999999999999986543211 111 244678999999999999999999999999998
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
+++.+.++.+ |.++|.+++|+|+|++|++|+.||.|++||+.+++.+.++..++...+..++
T Consensus 138 --------------~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 199 (312)
T 4ery_A 138 --------------TGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 199 (312)
T ss_dssp --------------TCCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEE
T ss_pred --------------CCEEEEEecC----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEE
Confidence 6777777766 9999999999999999999999999999999988888887665567899999
Q ss_pred EcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE----EEEec--CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 368 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV----LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v----~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
|+|++ +.+++|+ .+++||..++++.....+|.... ..+.+ ++.+++++.|+++++|++..++.
T Consensus 200 ~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~---- 271 (312)
T 4ery_A 200 FSPNG----KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI---- 271 (312)
T ss_dssp ECTTS----SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE----
T ss_pred ECCCC----CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh----
Confidence 99998 7888776 89999999999988888876542 34443 77899999999999999765442
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe--CCCeE-EEEcc
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 491 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg--~dG~i-lwd~~ 491 (1134)
...+.+|..+|.+++|+|+++++|+++ .||.+ +|+..
T Consensus 272 ----------------~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 ----------------VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ----------------EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ----------------hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 456778999999999999999999997 69999 99864
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-27 Score=275.32 Aligned_cols=301 Identities=15% Similarity=0.130 Sum_probs=220.5
Q ss_pred cCCCcc-cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 204 KFPISS-AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 204 ~~~~~~-~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
+.+|.. .|..++|+|+++.+++++.||++++|+............. ..+...+++++|+|++++||+|+.||+|++
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS---EGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC---SSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec---cccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 345655 8999999999999999999999999998654211110010 124578999999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC---eeEEEeccCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQIS 359 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~---~l~~tl~~h~ 359 (1134)
|++... ..+.+.++.+ |.++|++++|+|||++||+|+.|++|++||+.++ .++..+.+|
T Consensus 88 w~~~~~-------------~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h- 149 (345)
T 3fm0_A 88 WKKNQD-------------DFECVTTLEG----HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH- 149 (345)
T ss_dssp EEECCC--------------EEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-
T ss_pred EEccCC-------------CeEEEEEccC----CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-
Confidence 998721 1234566666 9999999999999999999999999999999764 345667776
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCce--EEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeee
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~--l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~ 431 (1134)
...|.+++|+|++ +.+++|+ ++++|+..+++ +.....+|...| ++|++ ++.+++++.|+++++|+...
T Consensus 150 ~~~v~~~~~~p~~----~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 150 TQDVKHVVWHPSQ----ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CSCEEEEEECSSS----SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCCeEEEEECCCC----CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 7789999999998 8888887 89999998775 345678999999 55666 89999999999999999654
Q ss_pred CCCeEEEeecCCCccccccccccceeecc-CCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE------EEeCCccc
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW------RVFGDITQ 503 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~-h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W------k~F~~~~~ 503 (1134)
......+..... ...|. +..++.+ |...|++++|+|+|..||+++.|+.+ +|+...+.- ........
T Consensus 226 ~~~~~~~~~~~~--~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 226 PGNEQGVACSGS--DPSWK---CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp TTCTTCCCCC-----CEEE---EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred CCCCccceeecc--CCccc---eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 332100000000 00111 1223333 88899999999999999999999999 999876421 10000001
Q ss_pred eeeeEEEEEEeeCC---EEEEEEEecCCCeeEEEEEeCC
Q 001165 504 EQKIQSKGLLWLGK---IIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 504 e~~~~v~gl~W~~~---~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.+.-.|..+.|.++ .+++| +.+..|++|...
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~-----s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASC-----SDDGEVAFWKYQ 334 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEE-----ETTSCEEEEEEC
T ss_pred cccCcEeEeEEeCCCceEEEEc-----CCCCcEEEEEec
Confidence 11234778899754 45555 345679999874
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=1.2e-27 Score=280.45 Aligned_cols=323 Identities=11% Similarity=0.080 Sum_probs=225.9
Q ss_pred EcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCccee
Q 001165 37 ASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1134)
Q Consensus 37 ~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~ 116 (1134)
.++....+|+...+...-....+. +.+.+.+.+++|||||++||+++ ++++++|++..+........+........
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 37 QTNDYYILYNPALPREIDVELHKS---LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 112 (393)
T ss_dssp ECSSCEEEECTTSCCCEEEEEEEE---EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred cCCceEEEECCCCCcccCceeEEe---cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccc
Confidence 344445577665443221111111 23567889999999999999976 67899999865432111111110000000
Q ss_pred eEEEeeceeecccccc--ceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCcccccc
Q 001165 117 KISLVLNEQLPFAEKG--LSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (1134)
Q Consensus 117 s~~~~~~~~~~~~~~~--~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~ 194 (1134)
.+... .....+ ....+++++++.+++|+.||.|++|+.+.. ...
T Consensus 113 ~~~~~-----~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~--------------------------- 158 (393)
T 1erj_A 113 NLNTS-----SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIV--------------------------- 158 (393)
T ss_dssp -------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEE---------------------------
T ss_pred ccccc-----ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEE---------------------------
Confidence 00000 000111 123467788999999999999998655422 111
Q ss_pred CCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEE
Q 001165 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAV 273 (1134)
Q Consensus 195 ~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAs 273 (1134)
..+.+|...|.+++|+|+++.+++++.||++++|++....... .. .+...+++++|+| +++++|+
T Consensus 159 -------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--~~-----~~~~~v~~~~~~~~~~~~l~~ 224 (393)
T 1erj_A 159 -------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--TL-----SIEDGVTTVAVSPGDGKYIAA 224 (393)
T ss_dssp -------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EE-----ECSSCEEEEEECSTTCCEEEE
T ss_pred -------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE--EE-----EcCCCcEEEEEECCCCCEEEE
Confidence 0245678899999999999999999999999999986533211 11 1236789999999 8999999
Q ss_pred eeeCCeEEEEeccccccceeeeeeeccCcceEEEEeec---ccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC-
Q 001165 274 GTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCR---YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC- 349 (1134)
Q Consensus 274 G~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~---~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~- 349 (1134)
|+.||+|++||+. +++.+..+.. ...+|.+.|++++|+|||++|++|+.||+|++||+...
T Consensus 225 ~s~d~~v~iwd~~---------------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 225 GSLDRAVRVWDSE---------------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EETTSCEEEEETT---------------TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EcCCCcEEEEECC---------------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999999999998 4444443310 11249999999999999999999999999999998642
Q ss_pred -----------eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec----
Q 001165 350 -----------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---- 411 (1134)
Q Consensus 350 -----------~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~---- 411 (1134)
.+..++.+| ...|.+++++|++ ..+++|+ ++++||..+++.+....+|.+.|..+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQND----EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp -----------CEEEEEECC-SSCEEEEEECGGG----CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred CcccccCCCCCcceEEEecc-cCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCc
Confidence 345566676 6789999999998 8888887 8999999999999999999999855443
Q ss_pred -----CCEEEeeecCCcEEeeeeee
Q 001165 412 -----GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 412 -----~k~l~S~s~d~ti~~w~l~~ 431 (1134)
++.++|++.|+++++|++..
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCCCCCEEEEECCCCcEEECcccc
Confidence 46799999999999999754
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=3.3e-28 Score=281.72 Aligned_cols=284 Identities=14% Similarity=0.104 Sum_probs=210.2
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEc------CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYS------NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG 278 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~s------DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg 278 (1134)
..|...|.+++|||||+++++++. ||++++|+.....+....... ...+...+++++|+|+++++ +|+.||
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~--~~~~~~~V~~~~~s~d~~~l-~~s~dg 115 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA--GVQTEAGVTDVAWVSEKGIL-VASDSG 115 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE--EEECSSCEEEEEEETTTEEE-EEETTS
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc--cCCCCCCEEEEEEcCCCCEE-EEECCC
Confidence 357889999999999999999988 678888876543322111110 01244679999999998765 567899
Q ss_pred eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC
Q 001165 279 VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 358 (1134)
Q Consensus 279 ~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h 358 (1134)
+|+|||+.+ ++..........+|.+.|++|+|+|||++|++|+.||+|++||+.+++++..+.+|
T Consensus 116 ~v~lWd~~~---------------~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 116 AVELWEILE---------------KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp CEEEC-----------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEeeccc---------------cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 999999983 22211110011249999999999999999999999999999999999999999887
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec--CCCccE--EEEec--CCEEEeeecCCcEEeeee
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV--LIFSF--GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~--~h~~~v--~~~s~--~k~l~S~s~d~ti~~w~l 429 (1134)
...|++++|+|++. ..+++++ ++++||+++++...... .|...+ ++|+| ++.+++++.|+++++||+
T Consensus 181 -~~~v~~v~~s~~~~---~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 181 -SSEVNCVAACPGKD---TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp -SSCEEEEEECTTCS---SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred -CCCEEEEEEccCCC---ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEEC
Confidence 78899999999872 3566655 89999998887655433 345556 55666 567889999999999998
Q ss_pred eeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCC-CEEEEEeCCCeE-EEEccCCcEEEeCCccceeee
Q 001165 430 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKI 507 (1134)
Q Consensus 430 ~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG-~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~ 507 (1134)
..++. ...+.+|..+|++++|||+| ++||+|+.||.| +||+.+++...+ ..|. -
T Consensus 257 ~~~~~--------------------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--~~H~--~ 312 (357)
T 4g56_B 257 KNPDS--------------------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--LSHR--D 312 (357)
T ss_dssp SCGGG--------------------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE--CCCS--S
T ss_pred CCCcE--------------------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE--CCCC--C
Confidence 66543 45678899999999999997 689999999999 999999865432 2233 2
Q ss_pred EEEEEEee---CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 508 QSKGLLWL---GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 508 ~v~gl~W~---~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.|.+++|. +..+++| +.+..|++|+..
T Consensus 313 ~V~~vafsP~d~~~l~s~-----s~Dg~v~iW~~~ 342 (357)
T 4g56_B 313 FVTGVAWSPLDHSKFTTV-----GWDHKVLHHHLP 342 (357)
T ss_dssp CEEEEEECSSSTTEEEEE-----ETTSCEEEEECC
T ss_pred CEEEEEEeCCCCCEEEEE-----cCCCeEEEEECC
Confidence 47788996 3466666 345679999874
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=4.9e-27 Score=267.20 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=222.1
Q ss_pred ccCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.+.+|.+.|.+++|+|++ +.+++++.||++++|++............. ...|...+++++|+|+++++++|+.||+|+
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-FKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEE-EECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceE-EeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 467899999999999975 899999999999999986433211111110 012457899999999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
+||+. +++.+.++.+ |.++|.+++|+|+|++|++|+.||+|++||+.+ .++.++.+| ..
T Consensus 91 ~wd~~---------------~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h-~~ 149 (319)
T 3frx_A 91 LWDVA---------------TGETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGH-ND 149 (319)
T ss_dssp EEETT---------------TTEEEEEEEC----CSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCC-SS
T ss_pred EEECC---------------CCCeeEEEcc----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEecc-CC
Confidence 99999 7888888887 999999999999999999999999999999976 456777777 67
Q ss_pred ceeeeEEcCCCCC--CcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCC
Q 001165 362 SISSPIVKPNQDC--KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 362 ~V~sv~~sp~~~~--~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
.|.++.++|.... ....+++|+ ++++|+.+++++.....+|...| +++++ ++.+++++.|+++++||+..+.
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 8999999997521 114677776 89999999999998889999998 55666 8999999999999999976543
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCcE-EEeCCcc----ceeeeE
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKW-RVFGDIT----QEQKIQ 508 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~W-k~F~~~~----~e~~~~ 508 (1134)
. ...+. +..+|.+++|||+|.+||+++.+|..+|++..+.. ..+.... ....-.
T Consensus 230 ~--------------------~~~~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 230 A--------------------MYTLS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp E--------------------EEEEE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred E--------------------EEEec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcc
Confidence 2 22233 34579999999999999999988744999977532 2222111 111223
Q ss_pred EEEEEeeC--CEEEEEEEecCCCeeEEEEEeC
Q 001165 509 SKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 509 v~gl~W~~--~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
+..++|.+ +++++| +.+..|++|+.
T Consensus 289 v~~~~~spdg~~l~sg-----~~Dg~i~vWd~ 315 (319)
T 3frx_A 289 AVSLAWSADGQTLFAG-----YTDNVIRVWQV 315 (319)
T ss_dssp EEEEEECTTSSEEEEE-----ETTSCEEEEEE
T ss_pred eeEEEECCCCCEEEEe-----ecCceEEEEEE
Confidence 66788864 467766 34467899965
No 40
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=8.9e-28 Score=279.06 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=150.7
Q ss_pred CCeEEEEECCCCCEEEEe--eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 257 GDAVCASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG--~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
..+.+++|||||+++|+| +.|++|+|||+. +++.+.++. |.+.|++|+|||||++|++
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~---------------~~~~~~~~~-----~~~~V~~v~fspdg~~l~s 193 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPS---------------DLTEKFEIE-----TRGEVKDLHFSTDGKVVAY 193 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETT---------------TTEEEEEEE-----CSSCCCEEEECTTSSEEEE
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECC---------------CCcEEEEeC-----CCCceEEEEEccCCceEEe
Confidence 346789999999997654 478999999998 677766653 7788999999999999999
Q ss_pred EECCCcEEEEecCCCeeE-EEeccCCCCceeeeEEcCCCCCCcceEEEcc-------eeEEEeCCCceEE----EEecCC
Q 001165 335 GWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLY----AIEEGS 402 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~-~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-------~i~~W~~~~~~l~----~~~~~h 402 (1134)
++.| ++.+|+..++... ......+...|.+++|+|++ ..+++++ .++.|+....... ....+|
T Consensus 194 ~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg----~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 194 ITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD----TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp ECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT----EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred ccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC----CEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence 9976 5555555444433 33333336789999999999 7777765 5778887665432 334678
Q ss_pred CccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccccccee-eccCCCceEEEEEcCCCCEEE
Q 001165 403 SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS-YISQNWPVQHVAASKDGMFLA 478 (1134)
Q Consensus 403 ~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~-~~~h~~~V~~va~SpdG~~LA 478 (1134)
...| ++|+| ++.+++++.|++|++||+.+++. ..+ ..+|..+|++++|||||++||
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~--------------------~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM--------------------SKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE--------------------EEEETTSSSSCEEEEEECTTSCEEE
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE--------------------EEEecCcccCCEEEEEECCCCCEEE
Confidence 8888 56777 99999999999999999765443 334 358999999999999999999
Q ss_pred EEeCCCeE-EEEccCC
Q 001165 479 VAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 479 sgg~dG~i-lwd~~sg 493 (1134)
+||.||+| +|++..+
T Consensus 329 S~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 329 SVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSEEEEEECCTT
T ss_pred EEeCCCeEEEEEcCCC
Confidence 99999999 9998643
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=7.1e-27 Score=268.45 Aligned_cols=299 Identities=12% Similarity=0.095 Sum_probs=214.6
Q ss_pred cccccceEEEeee--------CCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcc
Q 001165 128 FAEKGLSVSNIVS--------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF 199 (1134)
Q Consensus 128 ~~~~~~~V~~~s~--------d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~ 199 (1134)
+.++...|.++.. ++..+++|+.||+|++|+........... .
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~-----------------------------~ 67 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG-----------------------------I 67 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-----------------------------E
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-----------------------------c
Confidence 4455566766643 77889999999999987665332110000 0
Q ss_pred cccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe
Q 001165 200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV 279 (1134)
Q Consensus 200 ~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~ 279 (1134)
....+.+|...|.+++|+|++..+++++.||++++|++....... .+. .+...+.+++|+|++++|++|+.||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~--~~~----~h~~~v~~v~~sp~~~~l~s~~~d~~ 141 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK--RFV----GHQSEVYSVAFSPDNRQILSAGAERE 141 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE--EEE----CCCSCEEEEEECSSTTEEEEEETTSC
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE--EEc----CCCCcEEEEEECCCCCEEEEEcCCCE
Confidence 011356788999999999999999999999999999986543211 111 24578999999999999999999999
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC----------CEEEEEECCCcEEEEecCCC
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN----------SAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG----------~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
|++||+.. ... .... ...+|...|.+++|+|++ .+|++|+.||+|++||. ..
T Consensus 142 i~~wd~~~---------------~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~ 203 (343)
T 2xzm_R 142 IKLWNILG---------------ECK-FSSA-EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NF 203 (343)
T ss_dssp EEEEESSS---------------CEE-EECC-TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TT
T ss_pred EEEEeccC---------------Cce-eeee-cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CC
Confidence 99999872 111 1111 122489999999999998 79999999999999995 45
Q ss_pred eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC-CceEEEEecCCCccE--EEEecCCEEEeeecCCc
Q 001165 350 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGM 423 (1134)
Q Consensus 350 ~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~-~~~l~~~~~~h~~~v--~~~s~~k~l~S~s~d~t 423 (1134)
....++.+| ...|.+++|+|++ ..+++|+ ++++||.. ........ .+...| ++|++...+++++.|+.
T Consensus 204 ~~~~~~~~h-~~~v~~~~~s~~g----~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~ 277 (343)
T 2xzm_R 204 QIRYTFKAH-ESNVNHLSISPNG----KYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQG 277 (343)
T ss_dssp EEEEEEECC-SSCEEEEEECTTS----SEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSC
T ss_pred ceeEEEcCc-cccceEEEECCCC----CEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCC
Confidence 667778777 6789999999999 8899887 89999983 33333332 223346 66777334455677889
Q ss_pred EEeeeeeeCCCeE-EEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 424 TYARQVIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 424 i~~w~l~~~~~~l-~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
+++|++..+.... ..+.. ..........+|..+|.+++|+|+|++||+|+.||.+ +|++.++
T Consensus 278 v~iw~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 278 VKIFNLMTQSKAPVCTIEA--------EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEESSSCCSCSEEECCC--------CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEEeCCCCCCceEEeec--------CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9999976544310 00000 0000011234788899999999999999999999999 9998765
No 42
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=285.29 Aligned_cols=250 Identities=15% Similarity=0.111 Sum_probs=178.8
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
+...|.+++|||+|..+|+++.||.+.+|+... ...... +. .......+.+++|||||++||+|+.||+|++||+.
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~--~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SK--GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CS--SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CC--CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 367899999999999999999999999998433 100000 00 00112358899999999999999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee---EEEeccCCCCce
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSI 363 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l---~~tl~~h~~~~V 363 (1134)
+......+ =-.+.++.+...+|.+.|.+++||||| +++++.|++|++|++.++.. ..+++.+|...|
T Consensus 160 ~~~l~~~~--------~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 160 KNSENTPE--------FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp CCTTTCCC--------CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred CCcccccc--------ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 32100000 002445432233588999999999999 88899999999999988773 356753346789
Q ss_pred eeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEecCCCccE--EEE--ec-CCEEEeeecCCcEEeeeeeeCCCeE
Q 001165 364 SSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIF--SF-GKCCLNRGVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~h~~~v--~~~--s~-~k~l~S~s~d~ti~~w~l~~~~~~l 436 (1134)
.+++|+ + +.+++++ ++++|+..++++.....+|.+.+ +.| ++ ++.+++++.||+ ++|... .+
T Consensus 230 ~svaFs--g----~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----~~ 298 (588)
T 2j04_A 230 TDLKIV--D----YKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----EL 298 (588)
T ss_dssp CCEEEE--T----TEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----SE
T ss_pred EEEEEE--C----CEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----cE
Confidence 999999 4 5677665 99999999988855555898887 677 77 778899999999 999854 12
Q ss_pred EEeecCCC-c---c---ccccccccceeeccCCCceEEEEEcCCCCEEEEEeC
Q 001165 437 LVVQSEDT-D---E---LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 482 (1134)
Q Consensus 437 ~l~~g~~~-~---~---~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~ 482 (1134)
. +..+.. . + ..|+...-+.....++..|++++|||||+.+|++++
T Consensus 299 ~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 299 H-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp E-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred E-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 2 222211 0 1 246542112223344778999999999999999984
No 43
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=285.84 Aligned_cols=333 Identities=12% Similarity=0.099 Sum_probs=233.6
Q ss_pred eEEEeecCe-EEEEE----------c-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEE
Q 001165 24 IIYFKVNNG-LLLIA----------S-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYL 91 (1134)
Q Consensus 24 iv~fS~dg~-llAs~----------s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l 91 (1134)
.++|||||+ +||++ + |++|+||+....... +....+.+.+.+.+++|+|||++||+++.||.|
T Consensus 17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----SCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-----cEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 378999987 88887 4 568999999743211 011112245678999999999999999999999
Q ss_pred EEEEEEecC---cceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeC-CCeEEEEecCCcEEEEecCCcccc
Q 001165 92 HIFKVQITE---KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSD-NKHMLLGLSDGSLYSISWKGEFYG 165 (1134)
Q Consensus 92 ~lw~l~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d-~~~llv~t~dg~v~~~~wd~~~~~ 165 (1134)
++|++.... +.... +.++...| .+++++ +..+++++.||.|++|+.......
T Consensus 92 ~vw~~~~~~~~~~~~~~----------------------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 92 ELYSTNEANNAINSMAR----------------------FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEECCSSTTSCCCEEEE----------------------CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC
T ss_pred EEeecccccccccchhh----------------------ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 999997521 11110 11112223 355666 678999999999987544322100
Q ss_pred ceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccc
Q 001165 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKL 244 (1134)
Q Consensus 166 ~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~ 244 (1134)
.. ... ++ .......+...|.+++|+|+ ++.+++++.||.+.+|++.......
T Consensus 150 ~~----------~~~--~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 150 PS----------NYT--PL---------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp TT----------TCC--CB---------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred cc----------ccc--cc---------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence 00 000 00 00023467788999999999 7899999999999999986543211
Q ss_pred cceecccccCCCCCeEEEEECCCC-CEEEEeeeCC---eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCe
Q 001165 245 AEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRG---VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPV 320 (1134)
Q Consensus 245 ~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg---~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V 320 (1134)
..........+...+++++|+|++ .++++|+.|| +|++||+.... +.+..+. .+|.+.|
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--------------~~~~~~~---~~~~~~v 265 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--------------TPLQTLN---QGHQKGI 265 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--------------SCSBCCC---SCCSSCE
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--------------CCcEEee---cCccCce
Confidence 100000000014679999999997 6899999999 99999998321 2333333 1399999
Q ss_pred EEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEE
Q 001165 321 SCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 396 (1134)
Q Consensus 321 ~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~ 396 (1134)
++++|+| ||++|++|+.||.|++||+.+++++.++.+| ...|.+++|+|++. ..+++++ ++++|++.+.+..
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~---~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAP---DLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCT---TEEEECCSSSEEEEEESCCCCCS
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCC---CEEEEEecCCcEEEEEccCCCCC
Confidence 9999999 9999999999999999999999999999887 67899999999862 4677776 8999998765421
Q ss_pred EEe-----------------cC------------------CCccE--EEEec-CCEEEeeecCCcEEeeeeee
Q 001165 397 AIE-----------------EG------------------SSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 397 ~~~-----------------~~------------------h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~ 431 (1134)
... .+ |...+ .+|++ ++.+++++.|+++++|++.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 110 00 33333 67888 89999999999999999754
No 44
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=7.3e-27 Score=262.86 Aligned_cols=259 Identities=14% Similarity=0.079 Sum_probs=196.7
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC--CCEEEEeeeCCeEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE--QQILAVGTRRGVVE 281 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd--g~llAsG~~dg~V~ 281 (1134)
+.+|...|.+++|+|+++.+++++.||++++|++..........+. .|...+++++|+|+ +++||+|+.||+|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~----gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT----GHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC----CCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc----cccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4578899999999999999999999999999998643211111111 24578999999874 89999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC--CCEEEEEECCCcEEEEecCCCe--eEEEecc
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQ 357 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD--G~~Lasg~~Dg~I~vWdv~~~~--l~~tl~~ 357 (1134)
+||+.+.. .+.+.++.+ |.+.|.+++|+|+ |.+|++|+.||+|++||+..+. ....+.+
T Consensus 81 iWd~~~~~-------------~~~~~~~~~----h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 81 IWKEENGR-------------WSQIAVHAV----HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp EEEBSSSC-------------BCCCEEECC----CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred EEEcCCCc-------------eEEEEEeec----CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 99998211 023334444 9999999999998 8999999999999999997642 2345666
Q ss_pred CCCCceeeeEEcCCCCC---------CcceEEEcc---eeEEEeCCCce----EEEEecCCCccE--EEEec-C---CEE
Q 001165 358 ISLSSISSPIVKPNQDC---------KYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERV--LIFSF-G---KCC 415 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~~---------~~~~l~sgs---~i~~W~~~~~~----l~~~~~~h~~~v--~~~s~-~---k~l 415 (1134)
| ...|.+++|+|+... ....+++|+ ++++|+.++++ +...+.+|...| ++|++ + +.+
T Consensus 144 h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 144 H-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp C-SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred c-cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 6 678999999997310 115788877 89999987654 666778999998 55666 3 689
Q ss_pred EeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc-CC
Q 001165 416 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QK 493 (1134)
Q Consensus 416 ~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~-sg 493 (1134)
+|++.|+++++|++..+... |... ......|..+|.+++|||+|++||+|+.||.+ +|+.. .|
T Consensus 223 as~s~D~~v~iWd~~~~~~~-------------~~~~--~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQDNEQGP-------------WKKT--LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp EEEETTSCEEEEEESSTTSC-------------CEEE--ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred EEEECCCcEEEEEeCCCCCc-------------ccee--eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 99999999999997653321 0000 00113577889999999999999999999999 99986 56
Q ss_pred cEEEeC
Q 001165 494 KWRVFG 499 (1134)
Q Consensus 494 ~Wk~F~ 499 (1134)
.|....
T Consensus 288 ~w~~~~ 293 (297)
T 2pm7_B 288 KWEPAG 293 (297)
T ss_dssp CEEEC-
T ss_pred cEEecc
Confidence 787544
No 45
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=5.9e-27 Score=269.70 Aligned_cols=337 Identities=11% Similarity=0.064 Sum_probs=228.8
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc-ceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCC
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK-SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~ 143 (1134)
.+.+.+++|+|||++||+++.||.|++|++..... .... +.++...| .+++++++
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~----------------------~~~h~~~v~~~~~~~~~~ 65 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE----------------------LKEHNGQVTGVDWAPDSN 65 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE----------------------EECCSSCEEEEEEETTTT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee----------------------ecCCCCcccEEEEeCCCC
Confidence 46789999999999999999999999999975420 1110 11122233 35567888
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
.+++++.||.+++|+.+....... .....+...|.+++|+|+++.+
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~l 111 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPT----------------------------------LVILRINRAARCVRWAPNEKKF 111 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEE----------------------------------EECCCCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCeEEEEECCCCeeeee----------------------------------EEeecCCCceeEEEECCCCCEE
Confidence 999999999999876543211100 0134567889999999999999
Q ss_pred EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceee-eee--ecc
Q 001165 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSL--YDW 300 (1134)
Q Consensus 224 a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~-l~l--~~~ 300 (1134)
++++.||.+.+|++............ ...+...+++++|+|+++++++|+.||+|++||+......... ... ...
T Consensus 112 ~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (372)
T 1k8k_C 112 AVGSGSRVISICYFEQENDWWVCKHI--KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 189 (372)
T ss_dssp EEEETTSSEEEEEEETTTTEEEEEEE--CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred EEEeCCCEEEEEEecCCCcceeeeee--ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccccccccc
Confidence 99999999999999765421111110 1123578999999999999999999999999997522100000 000 000
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEE
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
..++.+..+.+ |.+.|++++|+|||++|++|+.||.|++||+.+++++.++..| ...|.+++|+|++ ..++
T Consensus 190 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~ 260 (372)
T 1k8k_C 190 PFGELMFESSS----SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITES----SLVA 260 (372)
T ss_dssp CTTCEEEECCC----CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETT----EEEE
T ss_pred chhhheEecCC----CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCC----CEEE
Confidence 14566666665 9999999999999999999999999999999988889899877 6789999999998 7777
Q ss_pred Ecc--eeEEEeCCC--ceEEEEe--cCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccccc
Q 001165 381 SGT--SMMQWDEYG--YRLYAIE--EGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 454 (1134)
Q Consensus 381 sgs--~i~~W~~~~--~~l~~~~--~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~ 454 (1134)
+|. .+++|+..+ ++..... ..+... .......++.|.......+.. + ....
T Consensus 261 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~---------~~~~ 317 (372)
T 1k8k_C 261 AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS-----------SQRGLTARERFQNLDKKASSE---G---------SAAA 317 (372)
T ss_dssp EETTSSCEEEEEETTTTEEEECCCCCCC-------------------CHHHHHHHCCCCC--------------------
T ss_pred EEeCCeEEEEEccCcCceEEEeeccCccccc-----------hhhhcchhhhhhhcccccccc---c---------Cccc
Confidence 766 888999876 5422211 111000 111122334441111010000 0 0000
Q ss_pred ceee-ccCCCceEEEEE-cCCC---CEEEEEeCCCeE-EEEccCC
Q 001165 455 PVSY-ISQNWPVQHVAA-SKDG---MFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 455 ~~~~-~~h~~~V~~va~-SpdG---~~LAsgg~dG~i-lwd~~sg 493 (1134)
...+ .+|..+|+++++ +++| ++|++||.||.+ +|++.++
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0222 489999999985 4788 999999999999 9999764
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6e-27 Score=273.91 Aligned_cols=330 Identities=10% Similarity=0.060 Sum_probs=235.5
Q ss_pred eeEEEeecCe-EEEEEc-CCeEEEeec----CCcce-----eEEEeecChhh----HHhhcceeEEEEcCCceEEEEEeC
Q 001165 23 QIIYFKVNNG-LLLIAS-PCHIELWSS----SQHKV-----RLGKYKRDSES----VQREGENLQAVWSPDTKLIAVVTS 87 (1134)
Q Consensus 23 ~iv~fS~dg~-llAs~s-~~~l~IW~~----~~~~~-----~l~~~~r~~~s----l~~~G~~~~v~wSPDg~~Lav~t~ 87 (1134)
..++|+|||+ +||+++ +++|+||+. ..+.. ........... ..+.+.+.+++|+|||++||+++.
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence 4489999999 999877 579999999 64331 22222221110 012447899999999999999999
Q ss_pred CCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCCeEEEEecCCcEEEEecCCcccc
Q 001165 88 SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYG 165 (1134)
Q Consensus 88 dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~llv~t~dg~v~~~~wd~~~~~ 165 (1134)
||.|++|+.. .+.... +..+...| .++.++++.+++++.+|.+.+|+.......
T Consensus 129 dg~i~i~~~~--~~~~~~----------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 129 NGELRLWNKT--GALLNV----------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp TSCEEEEETT--SCEEEE----------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCeEEEEeCC--CCeeee----------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 9999999922 111110 01111223 345667888999999999998766432111
Q ss_pred ceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccc
Q 001165 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA 245 (1134)
Q Consensus 166 ~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~ 245 (1134)
. .+..+... . .........+....+.++.|+|++ .+++++.||.+.+|+........
T Consensus 185 ~-~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~- 241 (425)
T 1r5m_A 185 Q-HFELKETG-------------G-------SSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTG- 241 (425)
T ss_dssp E-EECCC-----------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSE-
T ss_pred E-EeeccccC-------------c-------cceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceee-
Confidence 0 00000000 0 000000112233447788999885 58889999999999987543221
Q ss_pred ceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEE
Q 001165 246 EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW 325 (1134)
Q Consensus 246 ~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f 325 (1134)
... .+...+++++|+|++++|++|+.||.|++||+. +++....+.+ |.+.|.+++|
T Consensus 242 -~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~---------------~~~~~~~~~~----~~~~i~~~~~ 297 (425)
T 1r5m_A 242 -KLI----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG---------------NGNSQNCFYG----HSQSIVSASW 297 (425)
T ss_dssp -EEC----CCSSCEEEEEEETTTTEEEEEETTSCEEEECSS---------------SBSCSEEECC----CSSCEEEEEE
T ss_pred -eec----cCCCceEEEEECCCCCEEEEEcCCCEEEEEECC---------------CCccceEecC----CCccEEEEEE
Confidence 111 234788999999999999999999999999998 5666666655 9999999999
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCce--------
Q 001165 326 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-------- 394 (1134)
Q Consensus 326 SPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~-------- 394 (1134)
+||| .+++++.||.|++||+.++.++..+..| ...|.+++|+|++ ..+++|+ .+++|+..+++
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~----~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 371 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDG----QKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTS----SEEEEEETTSCEEEEECHHHHC-------
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCC----CEEEEEECCCeEEEEECCCCccceeeeec
Confidence 9999 9999999999999999999999888876 6789999999998 7888776 89999998888
Q ss_pred ------------EEEEecCCCc--cE--EEEec-CCEEEeeecCCcEEeeee
Q 001165 395 ------------LYAIEEGSSE--RV--LIFSF-GKCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 395 ------------l~~~~~~h~~--~v--~~~s~-~k~l~S~s~d~ti~~w~l 429 (1134)
++....+|.. .| ++|++ ++.+++++.|+++++|++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp -------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8888888866 77 55566 889999999999999996
No 47
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.5e-26 Score=273.26 Aligned_cols=307 Identities=14% Similarity=0.134 Sum_probs=241.6
Q ss_pred EEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCc
Q 001165 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (1134)
Q Consensus 74 ~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~ 153 (1134)
++++||++|++++.||+|++||+..... .. .+.++...|.++..+++.+++++.||.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~-~~----------------------~~~~h~~~v~~~~~~~~~l~s~~~dg~ 180 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKC-LR----------------------TLVGHTGGVWSSQMRDNIIISGSTDRT 180 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCE-EE----------------------ECCCCSSCEEEEEEETTEEEEEETTSC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcE-EE----------------------EEcCCCCCEEEEEecCCEEEEEeCCCe
Confidence 5778899999999999999999864321 11 122344567777778889999999999
Q ss_pred EEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEE
Q 001165 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (1134)
Q Consensus 154 v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~ 233 (1134)
|.+|+++.. ... ..+.+|...|.++.|+ ++.+++++.||.+.
T Consensus 181 i~vwd~~~~--~~~----------------------------------~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 181 LKVWNAETG--ECI----------------------------------HTLYGHTSTVRCMHLH--EKRVVSGSRDATLR 222 (445)
T ss_dssp EEEEETTTT--EEE----------------------------------EEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred EEEEECCcC--cEE----------------------------------EEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence 998766432 111 0234677889999985 56799999999999
Q ss_pred EEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeeccc
Q 001165 234 SCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYS 313 (1134)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~ 313 (1134)
+|+........ ... .+...++|+++ +++.+++|+.||+|++||+. +++.+.++.+
T Consensus 223 ~wd~~~~~~~~--~~~----~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~---------------~~~~~~~~~~-- 277 (445)
T 2ovr_B 223 VWDIETGQCLH--VLM----GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE---------------TETCLHTLQG-- 277 (445)
T ss_dssp EEESSSCCEEE--EEE----CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG---------------GTEEEEEECC--
T ss_pred EEECCCCcEEE--EEc----CCcccEEEEEE--CCCEEEEEcCCCEEEEEECC---------------CCcEeEEecC--
Confidence 99986543211 111 24467889998 78899999999999999998 7788888777
Q ss_pred CCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeC
Q 001165 314 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 390 (1134)
Q Consensus 314 ~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~ 390 (1134)
|.+.|.+++| ||..+++|+.||.|++||+.+++++.++.+| ...+.++.++ + ..+++|+ .+++|+.
T Consensus 278 --~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 278 --HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--D----NILVSGNADSTVKIWDI 346 (445)
T ss_dssp --CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--T----TEEEEEETTSCEEEEET
T ss_pred --CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--C----CEEEEEeCCCeEEEEEC
Confidence 9999999999 8999999999999999999999999999887 6678877764 3 5677766 8999999
Q ss_pred CCceEEEEecC---CCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceE
Q 001165 391 YGYRLYAIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 466 (1134)
Q Consensus 391 ~~~~l~~~~~~---h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~ 466 (1134)
.+++.+....+ |...|..+.+ ++.+++++.|+++++|++..++....+. .....+|..+|+
T Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------~~~~~~~~~~v~ 411 (445)
T 2ovr_B 347 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV---------------TLESGGSGGVVW 411 (445)
T ss_dssp TTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE---------------ECTTGGGTCEEE
T ss_pred CCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeee---------------ccccCCCCceEE
Confidence 99998888775 7788888877 8899999999999999987654310000 001146788999
Q ss_pred EEEEcCCCCEEEEEeCCCe----E-EEEccC
Q 001165 467 HVAASKDGMFLAVAGLHGL----I-LYDIRQ 492 (1134)
Q Consensus 467 ~va~SpdG~~LAsgg~dG~----i-lwd~~s 492 (1134)
+++|+|+|.++|+|+.||. + +||+..
T Consensus 412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999997 7 999865
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=7.3e-27 Score=271.61 Aligned_cols=301 Identities=13% Similarity=0.095 Sum_probs=210.6
Q ss_pred hhcceeEEEEcCCc-eEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEE--Eeee-C
Q 001165 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVS-D 141 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg-~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s~-d 141 (1134)
+.+.+.+++|+||| ++||+++.||+|+||++.......... ..++...|. ++++ +
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ---------------------GMGPGDAITGMKFNQFN 130 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC---------------------CCSTTCBEEEEEEETTE
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee---------------------cCCcCCceeEEEeCCCC
Confidence 34678999999999 999999999999999997543211111 011222343 3445 4
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC
Q 001165 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1134)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~ 221 (1134)
+..+++++.||.+.+|+.++.....+. ....+...|.+++|+|+++
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------------~~~~~~~~v~~~~~~~~~~ 176 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSVIQVFA----------------------------------KTDSWDYWYCCVDVSVSRQ 176 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCEEEEEE----------------------------------CCCCSSCCEEEEEEETTTT
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEe----------------------------------ccCCCCCCeEEEEECCCCC
Confidence 578889999999998766542111110 1223557899999999999
Q ss_pred eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeecc
Q 001165 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~ 300 (1134)
.+++++.||.+.+|++...... ... .+...+++++|+|+++ ++++|+.||+|++||+.....
T Consensus 177 ~l~~~~~d~~i~i~d~~~~~~~---~~~----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------- 239 (383)
T 3ei3_B 177 MLATGDSTGRLLLLGLDGHEIF---KEK----LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD---------- 239 (383)
T ss_dssp EEEEEETTSEEEEEETTSCEEE---EEE----CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS----------
T ss_pred EEEEECCCCCEEEEECCCCEEE---Eec----cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc----------
Confidence 9999999999999998432211 111 2457899999999999 999999999999999983211
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceE
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 379 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l 379 (1134)
.++.+..+ + |.+.|++++|+| ||++|++++.||.|++||+.++....++.+|.. ... ... ..
T Consensus 240 -~~~~~~~~-~----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~----~~~-----~~- 302 (383)
T 3ei3_B 240 -KNSYIAEM-P----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH-RQF----QHL-----TP- 302 (383)
T ss_dssp -TTCEEEEE-E----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB-CCC----TTS-----CC-
T ss_pred -ccceEEEe-c----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc-ccc----ccc-----cc-
Confidence 13444443 3 899999999999 999999999999999999988766666654411 000 000 00
Q ss_pred EEcceeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceee
Q 001165 380 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 458 (1134)
Q Consensus 380 ~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~ 458 (1134)
.. ..|.+.+..+. +.+++ ++. +++.|+++++||+..++. ...+
T Consensus 303 ---~~-~~~~p~~~~~~----------~~~s~dg~~--s~s~d~~i~iwd~~~~~~--------------------~~~l 346 (383)
T 3ei3_B 303 ---IK-ATWHPMYDLIV----------AGRYPDDQL--LLNDKRTIDIYDANSGGL--------------------VHQL 346 (383)
T ss_dssp ---CC-CEECSSSSEEE----------EECBCCTTT--CTTCCCCEEEEETTTCCE--------------------EEEE
T ss_pred ---eE-EeccCCCCceE----------EEecCCccc--ccCCCCeEEEEecCCCce--------------------eeee
Confidence 01 13544332211 33445 444 889999999999866543 2334
Q ss_pred cc--CCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 459 IS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 459 ~~--h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
.+ |...+..++|+|||++||+|+ ||.+ +||+.+
T Consensus 347 ~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 347 RDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 43 567788889999999999998 8999 999864
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=2.1e-26 Score=290.36 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=221.7
Q ss_pred hhcceeEEEEcCCc-eEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCC
Q 001165 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDN 142 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg-~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~ 142 (1134)
|.+.+.+++|+|++ +.|++++.||+|++|++........ ... ..+.++...| .++++++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------~~~----------~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------VAQ----------RRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------EEE----------EEEECCSSCEEEEEECTTS
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------ccc----------ceecCCCCcEEEEEECCCC
Confidence 45778999999975 6899999999999999965321100 000 0122233334 4567788
Q ss_pred CeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCe
Q 001165 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1134)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~ 222 (1134)
+.+++|+.||+|++|+.... ... ..+.+|...|.+++|+|+++.
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~--~~~----------------------------------~~~~~h~~~v~~~~~s~~~~~ 486 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAG--VST----------------------------------RRFVGHTKDVLSVAFSLDNRQ 486 (694)
T ss_dssp SEEEEEETTSEEEEEETTTT--EEE----------------------------------EEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEeCCCcEEEEECCCC--cce----------------------------------eEEeCCCCCEEEEEEeCCCCE
Confidence 99999999999998665422 111 023468889999999999999
Q ss_pred EEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC--CEEEEeeeCCeEEEEeccccccceeeeeeecc
Q 001165 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1134)
Q Consensus 223 la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg--~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~ 300 (1134)
+++++.||++++|+........ +......+...++|++|+|++ ..+++|+.||+|++||+.
T Consensus 487 l~s~s~D~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-------------- 549 (694)
T 3dm0_A 487 IVSASRDRTIKLWNTLGECKYT---ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-------------- 549 (694)
T ss_dssp EEEEETTSCEEEECTTSCEEEE---ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT--------------
T ss_pred EEEEeCCCEEEEEECCCCccee---eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC--------------
Confidence 9999999999999874322111 110001234678999999987 589999999999999998
Q ss_pred CcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEE
Q 001165 301 GMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 301 ~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
+++...++.+ |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++.. ...|.+++|+|++ ..++
T Consensus 550 -~~~~~~~~~~----h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~----~~l~ 618 (694)
T 3dm0_A 550 -NCKLRSTLAG----HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNR----YWLC 618 (694)
T ss_dssp -TCCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSS----SEEE
T ss_pred -CCcEEEEEcC----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCC----cEEE
Confidence 6777777777 999999999999999999999999999999999988877765 3579999999998 6676
Q ss_pred Ecc--eeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceee
Q 001165 381 SGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 458 (1134)
Q Consensus 381 sgs--~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~ 458 (1134)
++. .+++||.++++++.....+...... .. + ... +...
T Consensus 619 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~~--~---------~~~---------------------~~~~ 658 (694)
T 3dm0_A 619 AATEHGIKIWDLESKSIVEDLKVDLKAEAE--------KA--D---------NSG---------------------PAAT 658 (694)
T ss_dssp EEETTEEEEEETTTTEEEEEECCCCC------------------------------------------------------
T ss_pred EEcCCCEEEEECCCCCChhhhccccccccc--------cc--c---------ccc---------------------cccC
Confidence 655 8999999998877665432211000 00 0 000 1111
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 459 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 459 ~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
..+...+++++|||||++|++||.||.| +|++.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1223357899999999999999999999 99984
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=3.5e-26 Score=268.11 Aligned_cols=235 Identities=15% Similarity=0.154 Sum_probs=193.2
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
+...|.+++|+|+++.+++++.||.+.+|++....... ... .+...+++++|+|+++.|++|+.||+|++||+.
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--~~~----~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--ILQ----GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EEC----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--EEc----cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 44569999999999999999999999999986533211 111 245789999999999999999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEe-------ccC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI-------RQI 358 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl-------~~h 358 (1134)
+++...++. +.+.|.+++|+| ||++|++|+.||+|++||+.++.++..+ .+|
T Consensus 196 ---------------~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 196 ---------------TGQCSLTLS-----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255 (393)
T ss_dssp ---------------TTEEEEEEE-----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred ---------------CCeeEEEEE-----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC
Confidence 666655543 567899999999 9999999999999999999988877776 344
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc------------eEEEEecCCCccEE--EEec-CCEEEeeec
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY------------RLYAIEEGSSERVL--IFSF-GKCCLNRGV 420 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~------------~l~~~~~~h~~~v~--~~s~-~k~l~S~s~ 420 (1134)
...|.+++|+|++ +.+++|+ ++++|+..+. .+.....+|...|. ++++ ++.+++++.
T Consensus 256 -~~~v~~v~~~~~g----~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~ 330 (393)
T 1erj_A 256 -KDSVYSVVFTRDG----QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330 (393)
T ss_dssp -SSCEEEEEECTTS----SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred -CCCEEEEEECCCC----CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC
Confidence 6789999999999 8888887 8999998653 34556678888884 4555 889999999
Q ss_pred CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcC------CCCEEEEEeCCCeE-EEEccC
Q 001165 421 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK------DGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp------dG~~LAsgg~dG~i-lwd~~s 492 (1134)
|+++++||...+.. ...+.+|..+|.+++|++ +|++||+||.||.+ +|++..
T Consensus 331 D~~v~iwd~~~~~~--------------------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 331 DRGVLFWDKKSGNP--------------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TSEEEEEETTTCCE--------------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCeE--------------------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999765543 345678999999999986 78999999999999 999754
No 51
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-27 Score=291.22 Aligned_cols=328 Identities=9% Similarity=-0.003 Sum_probs=217.5
Q ss_pred hcceeEEEEcCCc---------eEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEE
Q 001165 67 EGENLQAVWSPDT---------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN 137 (1134)
Q Consensus 67 ~G~~~~v~wSPDg---------~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~ 137 (1134)
.|.+.+++|+|++ ++||+++.++.. + .
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----~----~----------------------------------- 168 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----E----P----------------------------------- 168 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------------------
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccC-----C----c-----------------------------------
Confidence 4678899999997 899999876420 0 0
Q ss_pred eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEc
Q 001165 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1134)
Q Consensus 138 ~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs 217 (1134)
..++++.+++++.||+|++|+++....... ....+.++.+.|.+++|+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--------------------------------~~~~l~~~~~~V~~v~ws 216 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--------------------------------KVQTIVHSFGEVWDLKWH 216 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEE--------------------------------EEEEEEECCCSEEEEEEC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCce--------------------------------EEEEEEecCCcEEEEEEC
Confidence 013456677888999999887654321100 000123456789999999
Q ss_pred CC------CCeEEEEEcCCeEEEEEeccCCccc-----cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 218 LP------MRLLFVLYSNGQLMSCSVSKKGLKL-----AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 218 p~------~~~la~~~sDG~v~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
|+ ++++|+++.||++.+|++....... ..........+...++|++|+|++ .||+|+.||+|++||+.
T Consensus 217 p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~ 295 (524)
T 2j04_B 217 EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLT 295 (524)
T ss_dssp SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECC
Confidence 97 5799999999999999986543210 000000001245789999999875 89999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEE--EECCCC-CEEEEEECCCcEEEEecCCCeeEEEeccCCC-Cc
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCI--AWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SS 362 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l--~fSPDG-~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~-~~ 362 (1134)
+. ..+..++.+ |.++|++| +|+|+| ++||||+.||+|+|||+.++++..++.+|.. ..
T Consensus 296 ~~--------------~~~~~~~~~----H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 296 DP--------------EVPSFYDQV----HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp BC--------------SSCSEEEEC----SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred CC--------------CCceEEeec----ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 21 122334455 99999999 679998 8999999999999999988776666666522 25
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEE--EEec-CCEEEeeecCCcEEeeeeeeCCCe-
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDR- 435 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~--~~s~-~k~l~S~s~d~ti~~w~l~~~~~~- 435 (1134)
|.+++|+|++ +.+++++ ++++|+++++++.....+|.+.|. +|+| ++.++||+.|+++++|+....-..
T Consensus 358 v~~v~fsp~~----~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~ 433 (524)
T 2j04_B 358 LVPVVYCPQI----YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG 433 (524)
T ss_dssp CCCEEEETTT----TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC
T ss_pred ccceEeCCCc----CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc
Confidence 8899999998 7777765 899999999887777778999994 4555 889999999999999995321100
Q ss_pred ----------EEEeec--CCCcc-c-c--------cc-ccccceeeccCCCceEEEEEcCCC---CEEEEEeCCCeE-EE
Q 001165 436 ----------LLVVQS--EDTDE-L-K--------IL-HLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LY 488 (1134)
Q Consensus 436 ----------l~l~~g--~~~~~-~-~--------w~-~~~~~~~~~~h~~~V~~va~SpdG---~~LAsgg~dG~i-lw 488 (1134)
..+..- ..... + . |. ....+.++.+|..+|.+++|||+| ..+|+|+.+|++ +|
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw 513 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE 513 (524)
T ss_dssp C------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred cccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence 011111 10000 0 1 11 123455677899999999999995 499999999999 99
Q ss_pred EccCC
Q 001165 489 DIRQK 493 (1134)
Q Consensus 489 d~~sg 493 (1134)
++...
T Consensus 514 ~l~~~ 518 (524)
T 2j04_B 514 YLSLE 518 (524)
T ss_dssp ECSCC
T ss_pred Ecccc
Confidence 98653
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-27 Score=277.31 Aligned_cols=344 Identities=13% Similarity=0.106 Sum_probs=239.7
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcC-CceEEEEEeCCCEEEEEEEEecC
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
.....|+|+++.+++++ .|+.. + ..+..+.. .|.+.+.+++|+| ||++||+++.||+|+||++....
T Consensus 30 ~~~~~f~~~~~~~~~~~-----~w~~~-g-~~~~~~~~-----~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~ 97 (437)
T 3gre_A 30 RDYKEFGPIQEIVRSPN-----MGNLR-G-KLIATLME-----NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII 97 (437)
T ss_dssp GGCGGGCCCCCCCCCCC-----GGGCC-C-CEEEEECT-----TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH
T ss_pred hchhhcCCccccccccc-----ccccc-c-eEEeeecc-----CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccc
Confidence 34456899999888765 48864 3 23333311 1347899999999 99999999999999999985310
Q ss_pred cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 101 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
. +.. +. ...
T Consensus 98 ~--------------------------------------------------~~~----~~----~~~------------- 106 (437)
T 3gre_A 98 V--------------------------------------------------GEV----YS----SSL------------- 106 (437)
T ss_dssp T--------------------------------------------------TCC----CS----CSE-------------
T ss_pred c--------------------------------------------------Ccc----cc----eee-------------
Confidence 0 000 00 000
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEec---cCCc-cccc--eecccccC
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS---KKGL-KLAE--FIKIDKEL 254 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~---~~~~-~~~~--~~~~~~~~ 254 (1134)
..+|...|.+++|+|+++.+++++.||.+.+|++. .... .... .+....+.
T Consensus 107 -----------------------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 107 -----------------------TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp -----------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred -----------------------eccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc
Confidence 01245678999999999999999999999999984 2111 1001 11111111
Q ss_pred ---CCCCeEEEE--ECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC
Q 001165 255 ---GSGDAVCAS--IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN 329 (1134)
Q Consensus 255 ---~~~~~~~va--~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG 329 (1134)
+...+++++ ++|+++++++|+.||+|++||+. +++.+.++.+ ..|.+.|++++|+|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~---------------~~~~~~~~~~--~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR---------------TLERLQIIEN--SPRHGAVSSICIDEEC 226 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT---------------TCCEEEEEEC--CGGGCCEEEEEECTTS
T ss_pred CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC---------------CCeeeEEEcc--CCCCCceEEEEECCCC
Confidence 345677887 77999999999999999999998 6667666654 1278899999999999
Q ss_pred CEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCC---
Q 001165 330 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS--- 403 (1134)
Q Consensus 330 ~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~--- 403 (1134)
++|++|+.||+|++||+..++++.++...+...|.+++++|.-......+++|+ ++++||..++++.....+|.
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 999999999999999999999999886323568999976654222226888876 79999999999887776553
Q ss_pred -----------------------ccE--EEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcc--c---------
Q 001165 404 -----------------------ERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE--L--------- 447 (1134)
Q Consensus 404 -----------------------~~v--~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~--~--------- 447 (1134)
..| ++++.++.+++++.|+++++|++..++.. ..+.++.... +
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 385 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTANL 385 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGC-EEEECC--CCCEEEEEEEETTE
T ss_pred ccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccc-eEEecccccCceEEEEEeecce
Confidence 234 34444678999999999999998776543 3333321111 0
Q ss_pred -----cccc--cccceeeccCCCceEEEEEcCC--CCEEEEEeCCCeE-EEE
Q 001165 448 -----KILH--LNLPVSYISQNWPVQHVAASKD--GMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 448 -----~w~~--~~~~~~~~~h~~~V~~va~Spd--G~~LAsgg~dG~i-lwd 489 (1134)
.|.. .........|...|++++++++ +.+|++|+.||.| +|+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 386 TMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0000 0001223458999999999988 8899999999999 994
No 53
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=4.1e-27 Score=267.52 Aligned_cols=258 Identities=16% Similarity=0.086 Sum_probs=194.5
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V 280 (1134)
.+.+|...|.+++|+|+++.+++++.||++++|++............ .|...+.+++|+| ++++||+|+.||+|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~----gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR----GHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE----CCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc----CCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 35688999999999999999999999999999998653211111111 2457899999986 48999999999999
Q ss_pred EEEeccccccceeeeeeeccCcc--eEEEEeecccCCCCcCeEEEEECCC--CCEEEEEECCCcEEEEecCCCee---EE
Q 001165 281 ELYDLAESASLIRTVSLYDWGMR--EVYYTFCRYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRL---MS 353 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~--~~l~~l~~~~~~h~g~V~~l~fSPD--G~~Lasg~~Dg~I~vWdv~~~~l---~~ 353 (1134)
++||+. ++ +...++.+ |.+.|++++|+|+ |.+||+|+.||+|++||+.++.. ..
T Consensus 84 ~iWd~~---------------~~~~~~~~~~~~----h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~ 144 (316)
T 3bg1_A 84 IIWREE---------------NGTWEKSHEHAG----HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144 (316)
T ss_dssp EEECCS---------------SSCCCEEEEECC----CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred EEEECC---------------CCcceEEEEccC----CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee
Confidence 999998 33 24445555 9999999999998 88999999999999999976532 23
Q ss_pred EeccCCCCceeeeEEcCCCCC-------------CcceEEEcc---eeEEEeCCCc---eEEEEecCCCccEEE--Eec-
Q 001165 354 TIRQISLSSISSPIVKPNQDC-------------KYEPLMSGT---SMMQWDEYGY---RLYAIEEGSSERVLI--FSF- 411 (1134)
Q Consensus 354 tl~~h~~~~V~sv~~sp~~~~-------------~~~~l~sgs---~i~~W~~~~~---~l~~~~~~h~~~v~~--~s~- 411 (1134)
.+.+| ...|.+++|+|+... ....+++|+ ++++|+.++. ++...+.+|...|.. |++
T Consensus 145 ~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 145 INNAH-TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223 (316)
T ss_dssp BTTSS-SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred eeccc-cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence 44455 678999999997310 015688877 8999999754 466677899999955 444
Q ss_pred C----CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-
Q 001165 412 G----KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 486 (1134)
Q Consensus 412 ~----k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i- 486 (1134)
+ +.++|++.|+++++|++...... .| .+..+..|+.+|.+++|||+|++||+||.||.+
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~------------~~----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~ 287 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSN------------TW----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 287 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCC------------CC----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred CCCCCceEEEEcCCCeEEEEEccCcccc------------ch----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence 3 67999999999999997542210 00 122345688899999999999999999999999
Q ss_pred EEEcc-CCcEEEeCC
Q 001165 487 LYDIR-QKKWRVFGD 500 (1134)
Q Consensus 487 lwd~~-sg~Wk~F~~ 500 (1134)
+|+.. .+.|.....
T Consensus 288 lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 288 LWKESVDGQWVCISD 302 (316)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEeee
Confidence 99985 567765443
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=5.3e-26 Score=257.34 Aligned_cols=276 Identities=14% Similarity=0.117 Sum_probs=218.4
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc-eecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE-FIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
.+|...|.+++|+|+++.+++++ ||.+.+|+.......... ... ...+...+++++|+|+++++++|+.||+|++|
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD--CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE--CSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc--ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 36788999999999999999998 999999998654322111 111 01244779999999999999999999999999
Q ss_pred eccccccceeeeeeeccCcce--EEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCC
Q 001165 284 DLAESASLIRTVSLYDWGMRE--VYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 361 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~--~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~ 361 (1134)
|+. +++ ....+.+ |.+.|++++|+|+|++|++++.||.|++||+.+++...++.+| ..
T Consensus 125 d~~---------------~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~ 184 (337)
T 1gxr_A 125 DLA---------------APTPRIKAELTS----SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TD 184 (337)
T ss_dssp ECC---------------CC--EEEEEEEC----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SS
T ss_pred ECC---------------CCCcceeeeccc----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cC
Confidence 998 333 3444554 8999999999999999999999999999999999999999887 67
Q ss_pred ceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 362 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.|.+++|+|++ ..+++++ .+++|+.++++...... +...+ +++++ ++.+++++.++.+++|++..+..
T Consensus 185 ~i~~~~~~~~~----~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~- 258 (337)
T 1gxr_A 185 GASCIDISNDG----TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK- 258 (337)
T ss_dssp CEEEEEECTTS----SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-
T ss_pred ceEEEEECCCC----CEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-
Confidence 89999999998 7888776 89999999988877653 45666 55666 88999999999999999755432
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEe
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 514 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W 514 (1134)
..+..|..+|.+++|+|+|++|++++.||.+ +||+.+++.... ..+ ...+..+.|
T Consensus 259 --------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--~~~--~~~v~~~~~ 314 (337)
T 1gxr_A 259 --------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKE--SSSVLSCDI 314 (337)
T ss_dssp --------------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EEC--SSCEEEEEE
T ss_pred --------------------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE--ecC--CCcEEEEEE
Confidence 3456788999999999999999999999999 999998864321 111 234667888
Q ss_pred eC--CEEEEEEEecCCCeeEEEEEeC
Q 001165 515 LG--KIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 515 ~~--~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.+ +.++++ +.+..|++|+.
T Consensus 315 s~~~~~l~~~-----~~dg~i~iw~~ 335 (337)
T 1gxr_A 315 SVDDKYIVTG-----SGDKKATVYEV 335 (337)
T ss_dssp CTTSCEEEEE-----ETTSCEEEEEE
T ss_pred CCCCCEEEEe-----cCCCeEEEEEE
Confidence 64 456665 23456788753
No 55
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=8.6e-26 Score=259.43 Aligned_cols=290 Identities=13% Similarity=0.100 Sum_probs=214.5
Q ss_pred ccCCCcccEEEEEE-----cC-CCCeEEEEEcCCeEEEEEeccCCccccceecc-cccCCCCCeEEEEECCCCCEEEEee
Q 001165 203 HKFPISSAIIWLEL-----CL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAVCASIAPEQQILAVGT 275 (1134)
Q Consensus 203 ~~~~~~~~V~~i~f-----sp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~va~spdg~llAsG~ 275 (1134)
.+.+|...|.+++| ++ +++.+++++.||++.+|++.........+... ....|...+++++|+|+++++++|+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 45689999999999 77 89999999999999999986432211001000 0012457799999999999999999
Q ss_pred eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 276 RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 276 ~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
.||+|++||+. +++.+.++.+ |.++|.+++|+|||++|++|+.|++|++||+.+.......
T Consensus 96 ~D~~v~lwd~~---------------~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 156 (343)
T 2xzm_R 96 WDKTLRLWDLR---------------TGTTYKRFVG----HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156 (343)
T ss_dssp TTSEEEEEETT---------------SSCEEEEEEC----CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC
T ss_pred CCCcEEEEECC---------------CCcEEEEEcC----CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee
Confidence 99999999999 7788888887 9999999999999999999999999999999865443322
Q ss_pred c-cCCCCceeeeEEcCCCCCC------cceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCC
Q 001165 356 R-QISLSSISSPIVKPNQDCK------YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG 422 (1134)
Q Consensus 356 ~-~h~~~~V~sv~~sp~~~~~------~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ 422 (1134)
. ..+...|.+++|+|++... ...+++|+ ++++|+. ..++.....+|...| ++|++ ++.+++++.|+
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg 235 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCC
Confidence 1 1236789999999986311 14577766 9999995 456677778999888 55666 89999999999
Q ss_pred cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE---Ee
Q 001165 423 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR---VF 498 (1134)
Q Consensus 423 ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk---~F 498 (1134)
++++||+..... +.....+..+|.+++|+|+|+++++|+ |+.+ +|++.+++-. .+
T Consensus 236 ~v~iwd~~~~~~--------------------~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 236 KLLIWDILNLTY--------------------PQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp EEEEEESSCCSS--------------------CSEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEEC
T ss_pred eEEEEECCCCcc--------------------cceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEe
Confidence 999999743332 222223455799999999999988665 5557 9999876421 22
Q ss_pred CCcc-------ceeeeEEEEEEeeC--CEEEEEEEecCCCeeEEEEEeC
Q 001165 499 GDIT-------QEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 499 ~~~~-------~e~~~~v~gl~W~~--~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.... ......+..++|.+ +.+++| +.+..|++|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-----~~Dg~v~~w~~ 338 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG-----FTDGVIRTFSF 338 (343)
T ss_dssp CCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE-----ETTSEEEEEEE
T ss_pred ecCcchhhhhhcCCCCceEEEEECCCCCeEEEe-----cCCceEEEEEE
Confidence 1100 01122467888974 466666 34467999976
No 56
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=7.4e-26 Score=255.52 Aligned_cols=279 Identities=11% Similarity=0.125 Sum_probs=219.5
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|...|.+++|+|+++.+++++.||.+.+|+........ .+. .+...+.+++|+|++++|++|+.||+|++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~----~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TIS----GHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EEC----CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--hhc----cCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 456889999999999999999999999999999975433211 111 24467999999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCc
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
||+. +++.+.++.+ |.+.|.+++|+|+|++|++|+.||+|++||+.+++.+.++..| ...
T Consensus 92 wd~~---------------~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 151 (312)
T 4ery_A 92 WDVS---------------SGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDP 151 (312)
T ss_dssp EETT---------------TCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSC
T ss_pred EECC---------------CCcEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCc
Confidence 9999 7778888877 9999999999999999999999999999999998888899887 678
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec-CCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCe
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~-~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~ 435 (1134)
|.+++|+|++ ..+++|+ .+++||..+++.+.... .+...+ +++++ ++.+++++.|+.+++||+..+..
T Consensus 152 v~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~- 226 (312)
T 4ery_A 152 VSAVHFNRDG----SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC- 226 (312)
T ss_dssp EEEEEECTTS----SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-
T ss_pred EEEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-
Confidence 9999999998 7888876 89999999888776653 344455 66777 88999999999999999765432
Q ss_pred EEEeecCCCccccccccccceeeccCCCc---eEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE-EeCCccceeeeEEE
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWP---VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSK 510 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~---V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk-~F~~~~~e~~~~v~ 510 (1134)
...+.+|... +......++|++|++|+.||.+ +||+.+++-. .+.. |+ -.+.
T Consensus 227 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~--~~v~ 283 (312)
T 4ery_A 227 -------------------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--HT--DVVI 283 (312)
T ss_dssp -------------------EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC--CS--SCEE
T ss_pred -------------------EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc--cC--CcEE
Confidence 2334445433 2233345789999999999999 9999887532 2221 22 2466
Q ss_pred EEEeeC--CEEEEEEEecCCCeeEEEEEeC
Q 001165 511 GLLWLG--KIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 511 gl~W~~--~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.+.|.+ +.+++++. +.+..|++|..
T Consensus 284 ~~~~~p~~~~l~s~~~---~~d~~i~~W~~ 310 (312)
T 4ery_A 284 STACHPTENIIASAAL---ENDKTIKLWKS 310 (312)
T ss_dssp EEEECSSSSEEEEEEC---TTTCCEEEEEC
T ss_pred EEeecCcCCceEEEEc---cCCccEEEecC
Confidence 777764 45555422 34567999975
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=1.5e-26 Score=271.87 Aligned_cols=313 Identities=10% Similarity=0.081 Sum_probs=232.7
Q ss_pred EEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccc
Q 001165 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS 290 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~ 290 (1134)
+++++|+|+++.+++++.||.+++|+......... . .......+.+|+|++++||+|+.||+|++||+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---- 127 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--L-----KRADYTAVDTAKLQMRRFILGTTEGDIKVLDSN---- 127 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT--S-----CSCCEEEEEEECSSSCEEEEEETTSCEEEECTT----
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeE--E-----ecCCceEEEEEecCCCEEEEEECCCCEEEEeCC----
Confidence 34589999999999999999999999864332111 0 112233455799999999999999999999998
Q ss_pred ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcC
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
+++....+.+ |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++.+| ...|.+++|+|
T Consensus 128 -----------~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~ 191 (420)
T 3vl1_A 128 -----------FNLQREIDQA----HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIID 191 (420)
T ss_dssp -----------SCEEEEETTS----SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEET
T ss_pred -----------Ccceeeeccc----ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcC
Confidence 6666666555 9999999999999999999999999999999998888899887 77999999999
Q ss_pred CCCCCcceEEEcc---eeEEEeCCCceEEEEecCC---CccEE-----------------------EEec-CCEEEeeec
Q 001165 371 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS---SERVL-----------------------IFSF-GKCCLNRGV 420 (1134)
Q Consensus 371 ~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h---~~~v~-----------------------~~s~-~k~l~S~s~ 420 (1134)
++ ..+++|+ ++++||..+++.......| ...+. +|++ ++.+++++.
T Consensus 192 ~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (420)
T 3vl1_A 192 RG----RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV 267 (420)
T ss_dssp TT----TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred CC----CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence 98 8888877 8999999999988887643 33332 2344 778999999
Q ss_pred CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCC-EEEEEeCCCeE-EEEccCCcE--E
Q 001165 421 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW--R 496 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~-~LAsgg~dG~i-lwd~~sg~W--k 496 (1134)
|+++++||+..+... .....+|..+|.+++|+|+|+ +|++|+.||.+ +||+.+++. .
T Consensus 268 dg~i~i~d~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 268 SGVITVHNVFSKEQT-------------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp TSCEEEEETTTCCEE-------------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred CCeEEEEECCCCcee-------------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 999999998665431 122346888999999999999 99999999999 999988642 2
Q ss_pred EeCCccceeeeEEEEEEeeCC-EEEEEEEecCCCeeEEEEEeCCCCCC---------cceeEEEecCCccEEEEecCC--
Q 001165 497 VFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQ---------SSLLCRKSLLAKPIVMDVYED-- 564 (1134)
Q Consensus 497 ~F~~~~~e~~~~v~gl~W~~~-~lv~~~~~~~~~~~eLrly~~~~ld~---------~~~~~~~~l~~~~~~l~~~~d-- 564 (1134)
.+.. + ....+..+.|.++ .++++ +.+..+++|+...... ...+....-.-..+.+++.+.
T Consensus 329 ~~~~--~-~~~~v~~~~~~~~~~l~s~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 400 (420)
T 3vl1_A 329 EFLI--N-EGTPINNVYFAAGALFVSS-----GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN 400 (420)
T ss_dssp EEEE--S-TTSCEEEEEEETTEEEEEE-----TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred hhhc--c-CCCCceEEEeCCCCEEEEe-----cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence 2211 0 1123556666655 45554 5668899998752111 111111111112345667666
Q ss_pred -EEEEEEcCCeEEEEEEE
Q 001165 565 -YILVTYRPFDVHIFHVK 581 (1134)
Q Consensus 565 -~llv~~~d~~i~l~~~~ 581 (1134)
.++++..++.+.+|+++
T Consensus 401 g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 401 GEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CEEEEEETTTEEEEEESC
T ss_pred ceEEEEcCCceEEEEecc
Confidence 68888889999999764
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=5.4e-26 Score=290.84 Aligned_cols=386 Identities=10% Similarity=0.124 Sum_probs=272.3
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
+.+.+.+++|+|||+.||+++.+|.|+||++..+........+. ......+++++++.+
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~---------------------~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE---------------------TPVRAGKFIARKNWI 70 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS---------------------SCEEEEEEEGGGTEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC---------------------CcEEEEEEeCCCCEE
Confidence 35678999999999999999999999999985431111111111 111234567788999
Q ss_pred EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEE
Q 001165 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1134)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~ 225 (1134)
++++.+|.|.+|+++.. .... .+.+|...|.+++|+|+++.+++
T Consensus 71 ~~~~~dg~i~vw~~~~~--~~~~----------------------------------~~~~~~~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTG--EKVV----------------------------------DFEAHPDYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp EEEETTSEEEEEETTTC--CEEE----------------------------------EEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEeCCCeEEEEECCCC--cEEE----------------------------------EEecCCCCEEEEEEeCCCCEEEE
Confidence 99999999998776532 1110 13457788999999999999999
Q ss_pred EEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcce
Q 001165 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMRE 304 (1134)
Q Consensus 226 ~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~ 304 (1134)
++.||.+.+|+........ .... .+...+++++|+| +++.+++|+.||+|++||+. +++
T Consensus 115 ~~~dg~i~vw~~~~~~~~~-~~~~----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~---------------~~~ 174 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWALE-QTFE----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG---------------QST 174 (814)
T ss_dssp EETTSEEEEEEGGGTSEEE-EEEE----CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT---------------CSS
T ss_pred EcCCCEEEEEECCCCceEE-EEEc----CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC---------------CCc
Confidence 9999999999986532111 1111 2346799999999 89999999999999999997 343
Q ss_pred EEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEc
Q 001165 305 VYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 382 (1134)
Q Consensus 305 ~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg 382 (1134)
....+.. .|.++|.+++|+| ||.+|++|+.||.|++||+.++....++.+| ...|.+++|+|++ ..+++|
T Consensus 175 ~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~ 246 (814)
T 3mkq_A 175 PNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTL----PIIISG 246 (814)
T ss_dssp CSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSS----SEEEEE
T ss_pred ceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEE
Confidence 3334333 2558999999999 9999999999999999999999999999887 6789999999998 788887
Q ss_pred c---eeEEEeCCCceEEEEecCCCccEEEE--ec-CCE-EEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc
Q 001165 383 T---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 455 (1134)
Q Consensus 383 s---~i~~W~~~~~~l~~~~~~h~~~v~~~--s~-~k~-l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~ 455 (1134)
+ ++++|+..++++......|...+..+ ++ ++. +++.+.++.+.+|++..+
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 303 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND----------------------- 303 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC-----------------------
T ss_pred eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC-----------------------
Confidence 6 89999999999998888888888544 45 442 355555667777764321
Q ss_pred eeeccCCCceEEEEEcCCCCEEEEEeCCCeE--EEEccCC-cEEEe-CCcc-------ceeeeEEEEEEeeC--CEEEEE
Q 001165 456 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQK-KWRVF-GDIT-------QEQKIQSKGLLWLG--KIIVVC 522 (1134)
Q Consensus 456 ~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i--lwd~~sg-~Wk~F-~~~~-------~e~~~~v~gl~W~~--~~lv~~ 522 (1134)
...++++|+|+.+++++.++.. ++..... .|..- +... ......+..+.|.+ .+++++
T Consensus 304 ---------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~ 374 (814)
T 3mkq_A 304 ---------EPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVV 374 (814)
T ss_dssp ---------SCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEE
T ss_pred ---------CceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEe
Confidence 1256889999999999887753 3332111 11110 0000 01112345677864 456655
Q ss_pred EEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEEEEecCCEEEEEEcCCeEEEEE
Q 001165 523 NYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 579 (1134)
Q Consensus 523 ~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~l~~~~d~llv~~~d~~i~l~~ 579 (1134)
+ +..+.+|+.... ...... +...+.+++.+..+++...++.+.+|+
T Consensus 375 ~------~~~~~i~~~~~~---~~~~~~--~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 375 G------DGEYVIYTALAW---RNKAFG--KCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp E------TTEEEEEETTTT---EEEEEE--ECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred c------CCEEEEEECccc---cccCCC--ceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 2 356889986411 111111 223456677788888888899999995
No 59
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.8e-27 Score=282.92 Aligned_cols=305 Identities=14% Similarity=0.130 Sum_probs=202.2
Q ss_pred cceeEEEEcC-CceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEE--Eeee-CCC
Q 001165 68 GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVS-DNK 143 (1134)
Q Consensus 68 G~~~~v~wSP-Dg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s~-d~~ 143 (1134)
+.+++++|+| ++++||+|+.||+|+|||+.......... +.++.+.|. +|+| ++.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~---------------------~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK---------------------GIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC---------------------CCSSSCCCCEEEECSSCTT
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE---------------------ccCCCCCEEEEEEeCCCCC
Confidence 4589999999 67799999999999999997643222211 112223343 3444 567
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
.|++++.||+|++|+.++.....+. ....+...+.+++|+|+++.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~l 224 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFA----------------------------------SSDTINIWFCSLDVSASSRMV 224 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEE----------------------------------CCSSCSCCCCCEEEETTTTEE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEe----------------------------------ccCCCCccEEEEEECCCCCEE
Confidence 8999999999998766543211110 011234557789999999999
Q ss_pred EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCc
Q 001165 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGM 302 (1134)
Q Consensus 224 a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~ 302 (1134)
++++.||.+.+|++.+....... .+...+++++|+|+++ ++|+|+.||+|++||+......
T Consensus 225 ~~g~~dg~i~~wd~~~~~~~~~~-------~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----------- 286 (435)
T 4e54_B 225 VTGDNVGNVILLNMDGKELWNLR-------MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----------- 286 (435)
T ss_dssp EEECSSSBEEEEESSSCBCCCSB-------CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-----------
T ss_pred EEEeCCCcEeeeccCcceeEEEe-------cccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-----------
Confidence 99999999999998653322221 2457899999999986 7889999999999999832211
Q ss_pred ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEc
Q 001165 303 REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 382 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg 382 (1134)
..+. ...+|.++|++++|+|||++|++|+.||+|+|||+.++.+...+..|.... . ..+.
T Consensus 287 ----~~~~-~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~---------~----~~~~-- 346 (435)
T 4e54_B 287 ----ASFL-YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH---------F----QHLT-- 346 (435)
T ss_dssp ----SCCS-BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC---------C----SSSC--
T ss_pred ----ceEE-EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc---------c----ccce--
Confidence 0000 122499999999999999999999999999999998887777766542110 0 0000
Q ss_pred ceeEEEeCCCceEEEEecCCCccEEEEec-CC-EEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeecc
Q 001165 383 TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 460 (1134)
Q Consensus 383 s~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k-~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~ 460 (1134)
.....|.+.+..+... +++ +. .+.++..++++++|+..++... ...+.+
T Consensus 347 ~~~~~~~~~~~~~~~~----------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~-------------------~~l~~~ 397 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVG----------RYPDPNFKSCTPYELRTIDVFDGNSGKMM-------------------CQLYDP 397 (435)
T ss_dssp CCBCEECSSSSCEEEE----------CCCCTTSCCSSTTCCCCEEEECSSSCCEE-------------------EEECCS
T ss_pred eEEEEEcCCCCEEEEE----------EcCCCCeEEEEecCCCEEEEEECCCCcEE-------------------EEEeCC
Confidence 0111344333222111 111 22 2234455678999997665431 122346
Q ss_pred CCCceEEE-EEcCCCCEEEEEeCCCeE-EEEccCCcE
Q 001165 461 QNWPVQHV-AASKDGMFLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 461 h~~~V~~v-a~SpdG~~LAsgg~dG~i-lwd~~sg~W 495 (1134)
|...|.++ +|||||++||+|+ |+.| +|++.+++-
T Consensus 398 ~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 398 ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 77788887 6999999999876 7788 999988753
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=4e-27 Score=274.77 Aligned_cols=296 Identities=18% Similarity=0.165 Sum_probs=219.7
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
.+.+|.+.|.+++|+|+++.+++++.||++.+|+........ .+. .+...+.+++|+|++++||+|+.|++|++
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~----~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--AIK----LHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--EEE----CCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--EEe----cCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 467899999999999999999999999999999985433211 111 24467889999999999999999999999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CEEEEEECCCcEEEEecCCCeeEEEe-----c
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI-----R 356 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~Lasg~~Dg~I~vWdv~~~~l~~tl-----~ 356 (1134)
|++........ .......+. +|.+.|.+++|+|++ ..|++|+.|++|++||+.++..+..+ .
T Consensus 135 w~~~~~~~~~~--------~~~~~~~~~----gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~ 202 (380)
T 3iz6_a 135 FNLSSQADRDG--------NMPVSRVLT----GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202 (380)
T ss_dssp EECCCCSSCCC--------SSTTCCBCC----CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred EECCCCccccC--------Cccceeecc----CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence 99973221100 001112233 399999999999974 57999999999999999998888777 3
Q ss_pred cCCCCceeeeEEcC-CCCCCcceEEEcc---eeEEEeCC-CceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeee
Q 001165 357 QISLSSISSPIVKP-NQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp-~~~~~~~~l~sgs---~i~~W~~~-~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~ 428 (1134)
+| ...|.++.++| ++ ..+++|+ ++++||++ +.+.+....+|...| ++|++ ++.++|++.|+++++||
T Consensus 203 ~h-~~~v~~~~~~~~~~----~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 203 GH-TADVLSLSINSLNA----NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SC-CSCEEEEEECSSSC----CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CC-ccCeEEEEeecCCC----CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 44 67899999987 55 7888887 99999997 557777788999888 66777 89999999999999999
Q ss_pred eeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE-EeCCccceee
Q 001165 429 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQK 506 (1134)
Q Consensus 429 l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk-~F~~~~~e~~ 506 (1134)
+..+.. +..+... +.....+...|++++|||+|++|++|+.||.+ +||+.+++.. .++.....+.
T Consensus 278 ~~~~~~-~~~~~~~------------~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 278 MRTGHQ-LQVYNRE------------PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE 344 (380)
T ss_dssp TTTTEE-EEEECCC------------CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCC
T ss_pred CCCCcE-EEEeccc------------ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCC
Confidence 866543 1111110 11111233458899999999999999999999 9999877543 2322211122
Q ss_pred eEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 507 IQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 507 ~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
-.|..+.|. +.++++| +.+..|++|+..
T Consensus 345 ~~v~~l~~s~dg~~l~sg-----s~D~~i~iW~~~ 374 (380)
T 3iz6_a 345 GRISCLGLSSDGSALCTG-----SWDKNLKIWAFS 374 (380)
T ss_dssp CCCCEEEECSSSSEEEEE-----CTTSCEEEEECC
T ss_pred CceEEEEECCCCCEEEEe-----eCCCCEEEEecC
Confidence 235566665 5577777 556789999874
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-27 Score=287.44 Aligned_cols=319 Identities=7% Similarity=-0.002 Sum_probs=204.6
Q ss_pred ecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHH-hhcceeEEEEcCC------ceEEEEEeCCCEEEEEEEEecC
Q 001165 29 VNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPD------TKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 29 ~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wSPD------g~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
|++++||+++ |++|+||+.+....... ...+ +. +.|.+..++|+|+ +.+||+++.||+|+||++....
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~---l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQT---IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEE-EEEE---EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCce-EEEE---EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 4445555554 56899999964322111 0000 11 2477899999997 6799999999999999996542
Q ss_pred cc--eecCCCCCCCcceeeEEEeeceeeccccccceEEEeee-CCCeEEEEecCCcEEEEecCCccccceeccccCCCcc
Q 001165 101 KS--IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (1134)
Q Consensus 101 ~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~-d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~ 177 (1134)
.. ....... + ...+.++...|.+++. .++.|++|+.||+|.+|+..... ...
T Consensus 247 ~~~~~~~~~~~------------p--~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~-~~~---------- 301 (524)
T 2j04_B 247 TDVHVFKMCEK------------P--SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-VPS---------- 301 (524)
T ss_dssp SSSSEEECCCS------------C--SEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS-SCS----------
T ss_pred cccccceeecC------------c--eEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC-Cce----------
Confidence 11 0000000 0 0112334455666654 34589999999999986554211 000
Q ss_pred ccccccccCCCccccccCCCcccccccCCCcccEEEE--EEcCCC-CeEEEEEcCCeEEEEEeccCCcc-ccceeccccc
Q 001165 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL--ELCLPM-RLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKE 253 (1134)
Q Consensus 178 ~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i--~fsp~~-~~la~~~sDG~v~l~~~~~~~~~-~~~~~~~~~~ 253 (1134)
..+.+|...|.+| .|+|++ +++++++.||++++|++...... ...++.
T Consensus 302 ------------------------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~---- 353 (524)
T 2j04_B 302 ------------------------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF---- 353 (524)
T ss_dssp ------------------------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC----
T ss_pred ------------------------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc----
Confidence 0134678899999 678988 89999999999999998643211 111111
Q ss_pred CCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 254 LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 254 ~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
....+.+++|||+++.+|+|+.|++|++||+. ++..+.++.+ |.++|++|+|||||+.||
T Consensus 354 -~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~---------------~~~~~~~l~g----H~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 354 -RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR---------------AAFAVHPLVS----RETTITAIGVSRLHPMVL 413 (524)
T ss_dssp -SCCSCCCEEEETTTTEEEEECSSSEEEEEETT---------------CTTCCEEEEE----CSSCEEEEECCSSCCBCE
T ss_pred -ccCcccceEeCCCcCeEEEeCCCCcEEEEECc---------------ccccceeeec----CCCceEEEEeCCCCCeEE
Confidence 11246789999999999999999999999998 5666666777 999999999999999999
Q ss_pred EEECCCcEEEEecCCCeeEEEecc----CCCCceeeeEEcCCCCCCcceEEEcceeEEEeCC-CceEEEEecCCCccE--
Q 001165 334 VGWKSRGLTVWSVSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEEGSSERV-- 406 (1134)
Q Consensus 334 sg~~Dg~I~vWdv~~~~l~~tl~~----h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~-~~~l~~~~~~h~~~v-- 406 (1134)
||+.||+|++||+.++ ++.+++. ++...|.+++|+|++ +.+.......+|... ++.+.....+|...|
T Consensus 414 Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g----~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~ 488 (524)
T 2j04_B 414 AGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKD----DKYRIDSSYEVYPLTVNDVSKAKIDAHGINITC 488 (524)
T ss_dssp EEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSS----CEEEECCCCCCCC-------------CCCSCCC
T ss_pred EEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCC----CeEEccCCceecccccCCcceeeecCCCceEEE
Confidence 9999999999998764 3322221 112257799999998 433221233334332 355666778898888
Q ss_pred EEEec-C---CEEEeeecCCcEEeeee
Q 001165 407 LIFSF-G---KCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 407 ~~~s~-~---k~l~S~s~d~ti~~w~l 429 (1134)
++|+| + ..+++|+.||++++|++
T Consensus 489 Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp EEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred EECCCCCCccHHHHhhccCceEEEEEc
Confidence 77777 3 38999999999999995
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=3.3e-25 Score=264.56 Aligned_cols=324 Identities=12% Similarity=0.090 Sum_probs=245.5
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
+.|+.++++.+++|+.||+|++|+.... ... ..+.+|.+.|.++
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~--~~~----------------------------------~~~~~h~~~V~~l 168 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK--KFL----------------------------------LQLSGHDGGVWAL 168 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT--EEE----------------------------------EEECCCSSCEEEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC--cEE----------------------------------EEEeCCCcCEEEE
Confidence 5788889999999999999998654322 111 0234788999999
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEEC--CCCCEEEEeeeCCeEEEEeccccccce
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIA--PEQQILAVGTRRGVVELYDLAESASLI 292 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~s--pdg~llAsG~~dg~V~lwd~~~~~~~~ 292 (1134)
+|+|++ .+++++.||++.+|++...... .... .+...+++++|+ ++++++++|+.||+|++||+.......
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFE----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEE--EEEC----CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEE--EEEC----CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 999988 8999999999999998654321 1111 245788999998 588999999999999999998543111
Q ss_pred e--------eeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 293 R--------TVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 293 ~--------~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
. .......+.......+.+ |.+.|.++ +|+|+++++|+.||.|++||+.+++++.++.+| ...|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~ 314 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRG----HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIY 314 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECC----CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccC----ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCEE
Confidence 0 000000001113445555 99999887 689999999999999999999999999999887 77899
Q ss_pred eeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEee
Q 001165 365 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~ 440 (1134)
+++|+|++ ..+++|+ ++++|+..+++++....+|...+..+.+ ++.+++++.|+++++|++..+...
T Consensus 315 ~~~~~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~----- 385 (464)
T 3v7d_B 315 STIYDHER----KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK----- 385 (464)
T ss_dssp EEEEETTT----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-----
T ss_pred EEEEcCCC----CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee-----
Confidence 99999998 7888877 8999999999999999999999977777 889999999999999997654431
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEE
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII 519 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~l 519 (1134)
....+...+..++|+|+|+++++|+ ||.+ +||+.+++...-.... ....+..+.|.++.+
T Consensus 386 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~--~~~~v~~v~~~~~~l 446 (464)
T 3v7d_B 386 ----------------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK--DADQIWSVNFKGKTL 446 (464)
T ss_dssp ----------------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT--TCSEEEEEEEETTEE
T ss_pred ----------------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc--CCCcEEEEEecCCEE
Confidence 1123566788899999999999999 8999 9999998643211111 234577888999988
Q ss_pred EEEEEecCCCeeEEEEEeC
Q 001165 520 VVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 520 v~~~~~~~~~~~eLrly~~ 538 (1134)
++++.. ++..-+.++++
T Consensus 447 ~~~~~~--~g~~~i~~ldf 463 (464)
T 3v7d_B 447 VAAVEK--DGQSFLEILDF 463 (464)
T ss_dssp EEEEEE--TTEEEEEEEEC
T ss_pred EEEEEe--CCeEEEEEeec
Confidence 887544 44455555543
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.1e-25 Score=255.73 Aligned_cols=303 Identities=14% Similarity=0.170 Sum_probs=205.1
Q ss_pred ccccCCcccccCCCCCCCCCcee--EEEeec-CeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcC
Q 001165 2 YMAYGWPQVIPLEQGLCPSSQQI--IYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP 77 (1134)
Q Consensus 2 ~~~~gwp~~~~~~~~~~~~~~~i--v~fS~d-g~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP 77 (1134)
||..-.++.+.+..-+.+|...| |+|+|+ +++||+++ |++|+|||+.......+...++.. .+.+.+.+++|+|
T Consensus 19 ~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~ 96 (340)
T 4aow_A 19 YFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISS 96 (340)
T ss_dssp -------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECT
T ss_pred EEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECC
Confidence 45555555554322123466666 899998 68999987 679999998643322222222211 1346789999999
Q ss_pred CceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEE
Q 001165 78 DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSI 157 (1134)
Q Consensus 78 Dg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~ 157 (1134)
||++|++++.||.|++|+............+ ........+.+++..+++++.||.+.+|
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGH---------------------TKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECC---------------------SSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCEEEEEcccccceEEeecccceeeeecCC---------------------CCceeEEEEeecCccceeecCCCeEEEE
Confidence 9999999999999999998543211111000 0112234556678889999999999875
Q ss_pred ecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCC--CeEEEEEcCCeEEEE
Q 001165 158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM--RLLFVLYSNGQLMSC 235 (1134)
Q Consensus 158 ~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~--~~la~~~sDG~v~l~ 235 (1134)
+........ ....++...+..+.|++++ ..+++++.|+.+.+|
T Consensus 156 --d~~~~~~~~---------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~ 200 (340)
T 4aow_A 156 --NTLGVCKYT---------------------------------VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200 (340)
T ss_dssp --CTTSCEEEE---------------------------------ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred --EeCCCceEE---------------------------------EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEE
Confidence 432211110 0234567788999998875 467888999999999
Q ss_pred EeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCC
Q 001165 236 SVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMD 315 (1134)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~ 315 (1134)
+........ .. ..+...+++++|+|++++||+|+.||+|++||+. +++.+..+.
T Consensus 201 d~~~~~~~~--~~----~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~---------------~~~~~~~~~----- 254 (340)
T 4aow_A 201 NLANCKLKT--NH----IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN---------------EGKHLYTLD----- 254 (340)
T ss_dssp ETTTTEEEE--EE----CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT---------------TTEEEEEEE-----
T ss_pred ECCCCceee--Ee----cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec---------------cCceeeeec-----
Confidence 986543211 11 1245789999999999999999999999999998 666666655
Q ss_pred CCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc--------CCCCceeeeEEcCCCCCCcceEEEcc---e
Q 001165 316 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ--------ISLSSISSPIVKPNQDCKYEPLMSGT---S 384 (1134)
Q Consensus 316 h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~--------h~~~~V~sv~~sp~~~~~~~~l~sgs---~ 384 (1134)
+...|.+++|+|++..++ ++.|+.|++||+.++.++.++.. .+...|++++|+|++ +.+++|+ +
T Consensus 255 ~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~Dg~ 329 (340)
T 4aow_A 255 GGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG----QTLFAGYTDNL 329 (340)
T ss_dssp CSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS----SEEEEEETTSC
T ss_pred CCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC----CEEEEEeCCCE
Confidence 356899999999987665 55689999999999887776653 125678888888887 6666655 5
Q ss_pred eEEEeCCCc
Q 001165 385 MMQWDEYGY 393 (1134)
Q Consensus 385 i~~W~~~~~ 393 (1134)
+++|++++|
T Consensus 330 v~iW~~~tG 338 (340)
T 4aow_A 330 VRVWQVTIG 338 (340)
T ss_dssp EEEEEEEC-
T ss_pred EEEEeCCCc
Confidence 666666554
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-25 Score=252.97 Aligned_cols=289 Identities=12% Similarity=0.102 Sum_probs=223.2
Q ss_pred ccccceEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCC
Q 001165 129 AEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (1134)
Q Consensus 129 ~~~~~~V~~--~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~ 206 (1134)
.++...|.+ ++++++.+++++.||.|.+|+.... ... ..+.+
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~----------------------------------~~~~~ 72 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERL----------------------------------GTLDG 72 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEE----------------------------------EEECC
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhh----------------------------------hhhhh
Confidence 344555654 5668889999999999998655422 111 02346
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC-----CeEE
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-----GVVE 281 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-----g~V~ 281 (1134)
|...|.+++|+|+++.+++++.||.+.+|++........ . .+...+.+++|+|+++.+++++.+ |.|+
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT--W-----KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE--E-----ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--e-----ecCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence 788999999999999999999999999999865432211 1 134789999999999999999999 9999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCc--CeEEEEECCCCCEEEEEECCCcEEEEecCC-CeeEEEeccC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI 358 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g--~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~-~~l~~tl~~h 358 (1134)
+|++............ ..+....+.. |.+ .|.+++|+|||+.|++|+.||.|++||+.+ ......+..|
T Consensus 146 ~~d~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 217 (369)
T 3zwl_B 146 IYEIERDSATHELTKV----SEEPIHKIIT----HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217 (369)
T ss_dssp EEEEEECTTTCCEEEE----CSSCSEEEEC----CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC
T ss_pred EEEecCCccceeeccc----ccceeeeccC----CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC
Confidence 9999854321111110 1223333333 666 999999999999999999999999999988 7888888877
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCC----------
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG---------- 422 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~---------- 422 (1134)
...|.+++|+|++ ..+++++ .+++||..++++..... +...+ ..+++ ++.+++++.++
T Consensus 218 -~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 291 (369)
T 3zwl_B 218 -EKSISDMQFSPDL----TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN 291 (369)
T ss_dssp -SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC----------
T ss_pred -CCceeEEEECCCC----CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecC
Confidence 6789999999998 7888776 89999999998887775 44555 66667 88999988888
Q ss_pred ----cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 423 ----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 423 ----ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
.+++|+...+.. ...+.+|..+|++++|+|||++||+|+.||.+ +|++.++.
T Consensus 292 ~~~~~i~~~d~~~~~~--------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 292 EGKFEARFYHKIFEEE--------------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ---CEEEEEETTTCCE--------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CCcceeEEEecCCCcc--------------------hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 566666443332 45667899999999999999999999999999 99998764
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=2.6e-25 Score=255.94 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=199.6
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
.|...|.+++|+|+++.+++++.||.+++|+...........+. .+...+++++|+|++++|++|+.||+|++||+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec----CCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 46788999999999999999999999999998764311111111 24578999999999999999999999999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe---eEEEeccCCCCc
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSS 362 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~---l~~tl~~h~~~~ 362 (1134)
. +++....+. ...|.+.|.+++|+|||++|++|+.||.|++||+..+. ....+...+...
T Consensus 82 ~---------------~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 82 K---------------GRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144 (372)
T ss_dssp E---------------TTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred C---------------CCeeeeeEE--eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence 7 444333221 12389999999999999999999999999999997765 234443333778
Q ss_pred eeeeEEcCCCCCCcceEEEcc---eeEEEeC------------------CCceEEEEecCCCccE--EEEec-CCEEEee
Q 001165 363 ISSPIVKPNQDCKYEPLMSGT---SMMQWDE------------------YGYRLYAIEEGSSERV--LIFSF-GKCCLNR 418 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~sgs---~i~~W~~------------------~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~ 418 (1134)
|.+++|+|++ ..+++|+ .+++|+. ..+++.....+|...+ +++++ ++.++++
T Consensus 145 i~~~~~~~~~----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 145 VLSLDWHPNS----VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp EEEEEECTTS----SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred eeEEEEcCCC----CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 9999999998 7888876 8999995 3678888888888888 55566 8899999
Q ss_pred ecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC--CcE
Q 001165 419 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--KKW 495 (1134)
Q Consensus 419 s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s--g~W 495 (1134)
+.|+++++|++..+.. ...+..|..+|.+++|+|+|+++++| .||.+ +|++.+ +.|
T Consensus 221 ~~d~~i~i~d~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 221 SHDSTVCLADADKKMA--------------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp ETTTEEEEEEGGGTTE--------------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEE
T ss_pred eCCCEEEEEECCCCce--------------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceE
Confidence 9999999999876553 34566888899999999999999887 88888 999998 887
Q ss_pred EEe
Q 001165 496 RVF 498 (1134)
Q Consensus 496 k~F 498 (1134)
...
T Consensus 280 ~~~ 282 (372)
T 1k8k_C 280 SFG 282 (372)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8e-25 Score=250.69 Aligned_cols=282 Identities=11% Similarity=0.115 Sum_probs=220.2
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCC
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~ 143 (1134)
|.+.+.+++|+|||++||+++.||.|++|++.......... ++...| .+++++++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------------------~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-----------------------GHTGTIWSIDVDCFTK 87 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-----------------------CCSSCEEEEEECTTSS
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-----------------------hcCCcEEEEEEcCCCC
Confidence 45678999999999999999999999999986432111111 122233 34566788
Q ss_pred eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE
Q 001165 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1134)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l 223 (1134)
.+++++.||.|.+|+.+.. .... ...+...|.++.|+|+++.+
T Consensus 88 ~l~s~~~dg~i~iwd~~~~--~~~~-----------------------------------~~~~~~~v~~~~~~~~~~~l 130 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNG--QCVA-----------------------------------TWKSPVPVKRVEFSPCGNYF 130 (369)
T ss_dssp EEEEEETTTEEEEEETTTC--CEEE-----------------------------------EEECSSCEEEEEECTTSSEE
T ss_pred EEEEEeCCCeEEEEECCCC--cEEE-----------------------------------EeecCCCeEEEEEccCCCEE
Confidence 9999999999998765432 1110 01145679999999999999
Q ss_pred EEEEcC-----CeEEEEEeccCCccccc-eec----ccccCC--CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccc
Q 001165 224 FVLYSN-----GQLMSCSVSKKGLKLAE-FIK----IDKELG--SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1134)
Q Consensus 224 a~~~sD-----G~v~l~~~~~~~~~~~~-~~~----~~~~~~--~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~ 291 (1134)
++++.+ |.+.+|+.......... ... .....+ ...+++++|+|+++.+++|+.||.|++||+.
T Consensus 131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~----- 205 (369)
T 3zwl_B 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS----- 205 (369)
T ss_dssp EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT-----
T ss_pred EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC-----
Confidence 999999 99999998654321100 000 000011 2378999999999999999999999999998
Q ss_pred eeeeeeeccCc-ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcC
Q 001165 292 IRTVSLYDWGM-REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 370 (1134)
Q Consensus 292 ~~~l~l~~~~~-~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp 370 (1134)
+ ++.+..+.+ |.+.|.+++|+|||++|++++.||.|++||+.++.+...+.. ...+..++|+|
T Consensus 206 ----------~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 269 (369)
T 3zwl_B 206 ----------NNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITP 269 (369)
T ss_dssp ----------TTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECS
T ss_pred ----------CCcEeEEEEec----CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecC
Confidence 4 566666666 999999999999999999999999999999999888888873 56899999999
Q ss_pred CCCCCcceEEEcc-----------------eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeee
Q 001165 371 NQDCKYEPLMSGT-----------------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 371 ~~~~~~~~l~sgs-----------------~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~ 430 (1134)
++ ..+++++ .+++|+..+++.+....+|...| +++++ ++.+++++.|+++++|++.
T Consensus 270 ~~----~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 270 LK----EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SS----SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred CC----ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 98 7777655 58899999999999999999998 55666 8899999999999999976
Q ss_pred eC
Q 001165 431 YG 432 (1134)
Q Consensus 431 ~~ 432 (1134)
.+
T Consensus 346 ~~ 347 (369)
T 3zwl_B 346 KS 347 (369)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=1.6e-25 Score=260.70 Aligned_cols=316 Identities=15% Similarity=0.054 Sum_probs=222.7
Q ss_pred cccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCC
Q 001165 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (1134)
Q Consensus 128 ~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~ 207 (1134)
+.++...|.+++.+++.+++++.||.|++|+.+....... . .....+.+|
T Consensus 12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------~-------------------~~~~~~~~h 61 (397)
T 1sq9_A 12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-----------K-------------------DKSYSHFVH 61 (397)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-----------G-------------------GGEEEEECC
T ss_pred hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-----------C-------------------CcceEEecC
Confidence 3455667888887778999999999999876654321000 0 000123467
Q ss_pred cccEEEEEEcCC----C---CeEEEEEcCCeEEEEEeccCCccccceecccccCC-----CCCeEEEEEC----CCCCE-
Q 001165 208 SSAIIWLELCLP----M---RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG-----SGDAVCASIA----PEQQI- 270 (1134)
Q Consensus 208 ~~~V~~i~fsp~----~---~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~va~s----pdg~l- 270 (1134)
...|.+++|+|+ + +.+++++.||.+.+|++............. ...+ ...+++++|+ |+++.
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK-LDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE-ECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee-ecccccccCCCcEEEEEEeeccCCCCceE
Confidence 889999999999 9 999999999999999987644210000000 0012 2789999999 99999
Q ss_pred EEEeeeCCeEEEEeccc------cccceeeeeeeccCcceEEEEeec---ccCCCCcCeEEEEECCCCCEEEEEECCCcE
Q 001165 271 LAVGTRRGVVELYDLAE------SASLIRTVSLYDWGMREVYYTFCR---YSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 341 (1134)
Q Consensus 271 lAsG~~dg~V~lwd~~~------~~~~~~~l~l~~~~~~~~l~~l~~---~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I 341 (1134)
+++|+.||.|++||+.. .... . +. . ..++.+ ....|.+.|++++|+|+| .|++|+.||.|
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~------~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTL-N-WS------P--TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTT-C-CC------C--EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred EEEEeCCCcEEEEeCCcccccccccee-e-cc------C--cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 99999999999999984 2111 0 00 0 001100 112388999999999999 99999999999
Q ss_pred EEEecCCCeeEEEecc---C--CCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecC---------
Q 001165 342 TVWSVSGCRLMSTIRQ---I--SLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG--------- 401 (1134)
Q Consensus 342 ~vWdv~~~~l~~tl~~---h--~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~--------- 401 (1134)
++||+.+++.+.++.. | ....|.+++|+|++ ..+++|+ .+++|+..+++.+....+
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 9999999998888876 4 15689999999998 7777764 688999999999888887
Q ss_pred ----CCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEee------cCCCccccccccccceeeccCCCceEEE
Q 001165 402 ----SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ------SEDTDELKILHLNLPVSYISQNWPVQHV 468 (1134)
Q Consensus 402 ----h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~------g~~~~~~~w~~~~~~~~~~~h~~~V~~v 468 (1134)
|...| +++++ ++.+++++.|+++++|++..++. +..+. +++.... .. .......|..+|+++
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~---~g-~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDIL---AV-DEHGDSLAEPGVFDV 360 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCC---CB-CTTSCBCSSCCEEEE
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccchhhhh---cc-ccccccccCCceeEE
Confidence 88888 45555 88999999999999999865543 21111 1000000 00 000112248999999
Q ss_pred EEcCCC----------CEEEEEeCCCeE-EEEccCCc
Q 001165 469 AASKDG----------MFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 469 a~SpdG----------~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
+|+|+| ++|++|+.||.+ +|++.+|+
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999999 799999999999 99998863
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.3e-26 Score=266.39 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=189.7
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
+...|.+++|+|+++.+++++.||.+.+|+...........+. .+...+++++|+|++++||+|+.||+|++||+.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS----DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC----CCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe----cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 4568999999999999999999999999999754211111111 245789999999999999999999999999998
Q ss_pred ccccceeeeeeeccCcce---EEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe---eEEEeccCCC
Q 001165 287 ESASLIRTVSLYDWGMRE---VYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISL 360 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~---~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~---l~~tl~~h~~ 360 (1134)
+++ ....+.+ |.+.|++++|+|||++|++|+.||.|++||+.++. +...+.+.|.
T Consensus 86 ---------------~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~ 146 (377)
T 3dwl_C 86 ---------------PDGTWKQTLVLLR----LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR 146 (377)
T ss_dssp ------------------CCCCEEECCC----CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC
T ss_pred ---------------CCCceeeeeEecc----cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC
Confidence 333 3334444 99999999999999999999999999999998876 4677777337
Q ss_pred CceeeeEEcCCCCCCcceEEEcc---eeEEEeCC------------------CceEEEEecCCCccE--EEEec-CCEEE
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY------------------GYRLYAIEEGSSERV--LIFSF-GKCCL 416 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~------------------~~~l~~~~~~h~~~v--~~~s~-~k~l~ 416 (1134)
..|.+++|+|++ ..+++|+ ++++|+.. .+++.... +|...| ++|++ ++.++
T Consensus 147 ~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 147 STILSLDWHPNN----VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp SCEEEEEECTTS----SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred CCeEEEEEcCCC----CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 899999999998 8888876 89999985 35566666 888888 55666 88999
Q ss_pred eeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCcEE
Q 001165 417 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 496 (1134)
Q Consensus 417 S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk 496 (1134)
+++.|+++++|++..+.... .....+.+|..+|.+++|+|||++|++|+.++.++|+...+.|+
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPP----------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWA 285 (377)
T ss_dssp EEETTTEEC-CEECSTTSCE----------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---C
T ss_pred EEeCCCcEEEEECCCCCCcc----------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceE
Confidence 99999999999987665410 01345678999999999999999999999888888887755554
Q ss_pred E
Q 001165 497 V 497 (1134)
Q Consensus 497 ~ 497 (1134)
.
T Consensus 286 ~ 286 (377)
T 3dwl_C 286 H 286 (377)
T ss_dssp C
T ss_pred E
Confidence 3
No 69
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=1.7e-25 Score=256.29 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=189.5
Q ss_pred CCcccEEEEEEcCC----CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeE
Q 001165 206 PISSAIIWLELCLP----MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVV 280 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~----~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V 280 (1134)
.+...|.+++|+|+ ++.+++++.||.+.+|+........ .+. .+...+++++|+| +++++++|+.||+|
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~----~~~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK--HYV----GHGNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--EEE----SCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--eec----CCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 36688999999999 6799999999999999986543211 111 2457899999999 99999999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc---
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ--- 357 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~--- 357 (1134)
++||+. +++.+..+.. ..+|.+.|.+++|+|+|++|++|+.||.|++||+.+++....+..
T Consensus 141 ~iwd~~---------------~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 141 RLWNIQ---------------TDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp EEEETT---------------TTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred EEEEee---------------cCeEEEEecc-cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 999998 6666666521 123999999999999999999999999999999987654433322
Q ss_pred -------------------------CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc--------------eE
Q 001165 358 -------------------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------------RL 395 (1134)
Q Consensus 358 -------------------------h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~--------------~l 395 (1134)
| ...|.+++|+ + +.+++++ .+++|+..++ .+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 277 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--G----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--T----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE
T ss_pred ecCCCCcccccceeeccCccccccCC-cceEEEEEEc--C----CEEEEEecCCEEEEEeCCCccccccccccCCcchhe
Confidence 4 6789999998 4 5677766 8999998775 34
Q ss_pred EEEecCCCccE--EEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccC--CCceEEE
Q 001165 396 YAIEEGSSERV--LIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHV 468 (1134)
Q Consensus 396 ~~~~~~h~~~v--~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h--~~~V~~v 468 (1134)
+....+|...| +++++ ++.+++++.|+.+++|++..++... .....+.+| ..+|+++
T Consensus 278 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~~~~~~~~~~v~~~ 341 (366)
T 3k26_A 278 LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK----------------AKCTTLTHHKCGAAIRQT 341 (366)
T ss_dssp EEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG----------------CEEEEECCTTCCSCEEEE
T ss_pred eccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc----------------ccceEEcccccCCceEEE
Confidence 66667777776 34444 6889999999999999987654310 012245566 7899999
Q ss_pred EEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 469 AASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 469 a~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
+|+|+|++||+|+.||.+ +||+.+
T Consensus 342 ~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 342 SFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC--
T ss_pred EeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999999 999853
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.6e-26 Score=264.73 Aligned_cols=257 Identities=11% Similarity=0.115 Sum_probs=180.5
Q ss_pred hcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCCe
Q 001165 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKH 144 (1134)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~ 144 (1134)
.+.+.+++|+|||++||+++.||+|++|++......... .+.++...| .+++++++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---------------------EEecCCceEEEEEEeCCCCE
Confidence 457899999999999999999999999999753101110 011122233 345667889
Q ss_pred EEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEE
Q 001165 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 145 llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la 224 (1134)
+++++.||.+++|+.+.. .... ....+..|...|.+++|+|+++.++
T Consensus 70 l~s~s~d~~v~vwd~~~~--~~~~-------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~ 116 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPD--GTWK-------------------------------QTLVLLRLNRAATFVRWSPNEDKFA 116 (377)
T ss_dssp EEEEETTSSEEEC--------CCC-------------------------------CEEECCCCSSCEEEEECCTTSSCCE
T ss_pred EEEEeCCCeEEEEEcCCC--Ccee-------------------------------eeeEecccCCceEEEEECCCCCEEE
Confidence 999999999987544332 1000 0012346788999999999999999
Q ss_pred EEEcCCeEEEEEeccCCcccc-ceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeecc---
Q 001165 225 VLYSNGQLMSCSVSKKGLKLA-EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW--- 300 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~--- 300 (1134)
+++.||.+.+|++........ ..+. -.+...+++++|+|++++||+|+.||+|++||+.......+. ....+
T Consensus 117 ~~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~ 192 (377)
T 3dwl_C 117 VGSGARVISVCYFEQENDWWVSKHLK---RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP-EASVWGSR 192 (377)
T ss_dssp EEESSSCEEECCC-----CCCCEEEC---SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC-CSCSSCSC
T ss_pred EEecCCeEEEEEECCcccceeeeEee---cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc-cccccccc
Confidence 999999999999875432111 1111 014578999999999999999999999999998632100000 00000
Q ss_pred -CcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee----EEEeccCCCCceeeeEEcCCCCCC
Q 001165 301 -GMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVKPNQDCK 375 (1134)
Q Consensus 301 -~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l----~~tl~~h~~~~V~sv~~sp~~~~~ 375 (1134)
..++.+.++ + |.+.|++++|+|||++||+|+.||+|++||+.++.. +.++.+| ...|.+++|+|++
T Consensus 193 ~~~~~~~~~~-~----~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~--- 263 (377)
T 3dwl_C 193 LPFNTVCAEY-P----SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANES--- 263 (377)
T ss_dssp CCEEEEEECC-C----CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETT---
T ss_pred cchhhhhhcc-c----CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCC---
Confidence 024455554 4 999999999999999999999999999999988776 6777777 6789999999998
Q ss_pred cceEEEcc--eeEEEeCC
Q 001165 376 YEPLMSGT--SMMQWDEY 391 (1134)
Q Consensus 376 ~~~l~sgs--~i~~W~~~ 391 (1134)
..+++|+ .+.+|+..
T Consensus 264 -~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 264 -AIVAAGYNYSPILLQGN 280 (377)
T ss_dssp -EEEEEESSSSEEEECCC
T ss_pred -CEEEEEcCCcEEEEEeC
Confidence 8888877 56677654
No 71
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=1.8e-25 Score=256.04 Aligned_cols=296 Identities=12% Similarity=0.148 Sum_probs=223.8
Q ss_pred cCCCcccEEEEEEcCC----CCeEEEEEcCCeEEEEEeccCCcc-ccceecccccCCCCCeEEEEECCC----CCEEEEe
Q 001165 204 KFPISSAIIWLELCLP----MRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELGSGDAVCASIAPE----QQILAVG 274 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~----~~~la~~~sDG~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~va~spd----g~llAsG 274 (1134)
..+|...|.+++|+|+ ...++++..+|.+.+|+....... ....+.. ..+...+++++|+|+ +++||+|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD--ADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC--SCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc--cCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 3478999999999994 456777778889999998744321 1222211 113467999999999 7799999
Q ss_pred eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEE
Q 001165 275 TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMS 353 (1134)
Q Consensus 275 ~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~ 353 (1134)
+.||+|++||+. +++.+..+.+ |.++|++++|+| ++++|++|+.||.|++||+.+++...
T Consensus 92 ~~dg~i~v~d~~---------------~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 92 GSRGIIRIINPI---------------TMQCIKHYVG----HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp ETTCEEEEECTT---------------TCCEEEEEES----CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCCEEEEEEch---------------hceEeeeecC----CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE
Confidence 999999999998 7777888777 999999999999 99999999999999999999999888
Q ss_pred Ee---ccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEE----------------------------Ee
Q 001165 354 TI---RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA----------------------------IE 399 (1134)
Q Consensus 354 tl---~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~----------------------------~~ 399 (1134)
.+ .+| ...|.+++|+|++ ..+++|+ .+++|+..+++... ..
T Consensus 153 ~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 153 IFGGVEGH-RDEVLSADYDLLG----EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp EECSTTSC-SSCEEEEEECTTS----SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred Eecccccc-cCceeEEEECCCC----CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 88 455 7789999999998 7888876 89999998765432 22
Q ss_pred cCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCC--CCE
Q 001165 400 EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--GMF 476 (1134)
Q Consensus 400 ~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Spd--G~~ 476 (1134)
.+|...|..+.+ ++.+++++.|+.+++|++..+...+...... -........+.+|..+|++++|+|+ |++
T Consensus 228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPS------ESNVTILGRFDYSQCDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTT------CCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccC------CcchheeccccccCCcEEEEEEcCCCCCcE
Confidence 237777855555 8999999999999999986654311000000 0011223456788899999999999 999
Q ss_pred EEEEeCCCeE-EEEccCCcE-----EEeCCccceeeeEEEEEEeeC--CEEEEEEEecCCCeeEEEEEeC
Q 001165 477 LAVAGLHGLI-LYDIRQKKW-----RVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 477 LAsgg~dG~i-lwd~~sg~W-----k~F~~~~~e~~~~v~gl~W~~--~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
||+|+.||.+ +||+.+++. ..+.. +.....+..+.|.+ ++++++ +.+..|++|+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~-----~~dg~i~iwd~ 364 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTH--HKCGAAIRQTSFSRDSSILIAV-----CDDASIWRWDR 364 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECC--TTCCSCEEEEEECTTSSEEEEE-----ETTSEEEEEEC
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcc--cccCCceEEEEeCCCCCeEEEE-----eCCCEEEEEEe
Confidence 9999999999 999988631 12222 21123577888864 467766 34467999976
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=1.2e-24 Score=274.24 Aligned_cols=288 Identities=15% Similarity=0.183 Sum_probs=220.0
Q ss_pred ccCCCcccEEEEEEcCCC-CeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 203 HKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~-~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.+.+|...|++++|+|++ +.+++++.||++++|++............. ...|...+++++|+|++++|++|+.||+|+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~-~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRR-LTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEE-EECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccce-ecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 456899999999999975 789999999999999986533211110000 012457899999999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec--cCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR--QIS 359 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~--~h~ 359 (1134)
|||+. +++...++.+ |.+.|.+++|+|||++|+||+.|++|++||+.+........ ..|
T Consensus 456 vwd~~---------------~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 456 LWDLA---------------AGVSTRRFVG----HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp EEETT---------------TTEEEEEEEC----CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred EEECC---------------CCcceeEEeC----CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 99998 7778888877 99999999999999999999999999999997765443332 123
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCC
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
...|.+++|+|++. ...+++|+ ++++||..++++.....+|...| +++++ ++.+++++.|+++++||+..+.
T Consensus 517 ~~~v~~~~~~~~~~--~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 517 RDWVSCVRFSPNTL--QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSCEEEEEECSCSS--SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCcEEEEEEeCCCC--cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 67899999999862 14577776 99999999999999999999998 55666 8999999999999999976543
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCCcEE-EeCCcc----------
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR-VFGDIT---------- 502 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg~Wk-~F~~~~---------- 502 (1134)
. ...+ .++.+|.+++|||+|.+|++++.++..+||+.++... .+....
T Consensus 595 ~--------------------~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 595 K--------------------LYSL-EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp E--------------------EECC-BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC---------
T ss_pred e--------------------EEEe-cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccccccc
Confidence 2 1122 3456799999999999999887666339999987532 221100
Q ss_pred -----ceeeeEEEEEEeeC--CEEEEEEEecCCCeeEEEEEeC
Q 001165 503 -----QEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 503 -----~e~~~~v~gl~W~~--~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
....+.|..+.|.+ +.+++| +.+..|++|+.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sg-----s~Dg~i~iW~i 691 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSG-----YTDGVIRVWGI 691 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEE-----ETTSEEEEEEC
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEE-----cCCCeEEEEec
Confidence 00112366788874 467766 34567999976
No 73
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=5.7e-25 Score=248.74 Aligned_cols=283 Identities=12% Similarity=0.040 Sum_probs=200.9
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V 280 (1134)
.+.+|...|.+++|+|+++.+++++.||.+.+|++........ .... ...+...+++++|+| ++++|++|+.||+|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE-LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE-EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce-ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3568899999999999999999999999999999975432110 0000 012457899999999 69999999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC--CCEEEEEECCCcEEEEecCCCeeEEEec--
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRLMSTIR-- 356 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD--G~~Lasg~~Dg~I~vWdv~~~~l~~tl~-- 356 (1134)
++||+......... ...+.+..+.+ |.+.|.+++|+|+ |++|++|+.||.|++||+.++.....+.
T Consensus 84 ~vwd~~~~~~~~~~------~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 84 KLWEEDPDQEECSG------RRWNKLCTLND----SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEECTTSCTTSS------CSEEEEEEECC----CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEecCCCcccccc------cCcceeeeecc----cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 99999843210000 01134555555 9999999999999 9999999999999999997665433221
Q ss_pred ----------cCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceE--EEEecCCCccE--EEEec-C----CE
Q 001165 357 ----------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERV--LIFSF-G----KC 414 (1134)
Q Consensus 357 ----------~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l--~~~~~~h~~~v--~~~s~-~----k~ 414 (1134)
..+...+.+++|+|+.... ..+++++ .+..|+...++. +....+|...| +++++ + +.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred ccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 1235679999999972111 5666655 667777777665 56667888888 55566 5 68
Q ss_pred EEeeecCCcEEeeeeeeCCCeEEEeecCCC-------cc-----------------cccc--ccccceeeccCCCceEEE
Q 001165 415 CLNRGVSGMTYARQVIYGEDRLLVVQSEDT-------DE-----------------LKIL--HLNLPVSYISQNWPVQHV 468 (1134)
Q Consensus 415 l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~-------~~-----------------~~w~--~~~~~~~~~~h~~~V~~v 468 (1134)
+++++.|+++++|++..+............ +. ..|. ..+....+.+|..+|+++
T Consensus 233 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 312 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV 312 (351)
T ss_dssp EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEE
T ss_pred EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE
Confidence 999999999999998765332211111000 00 0111 123345677899999999
Q ss_pred EEcCCCCEEEEEeCCCeE-EEEccCC-cEEEe
Q 001165 469 AASKDGMFLAVAGLHGLI-LYDIRQK-KWRVF 498 (1134)
Q Consensus 469 a~SpdG~~LAsgg~dG~i-lwd~~sg-~Wk~F 498 (1134)
+|+|+|++||+||.||.+ +|++.++ .|+.+
T Consensus 313 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 313 SWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999 9999875 45443
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=1e-24 Score=257.72 Aligned_cols=281 Identities=15% Similarity=0.198 Sum_probs=212.6
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcc
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~ 102 (1134)
..++.|+++ +||++.|++|+|||...+. .+...... .+.+.+++|+|+|||++||+|+.||+|+||++.... .
T Consensus 109 ~~l~wS~~n-~lAvgld~tV~lWd~~tg~-~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~ 181 (420)
T 4gga_A 109 NLVDWSSGN-VLAVALDNSVYLWSASSGD-ILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-R 181 (420)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCC-EEEEEECC----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-E
T ss_pred eeEEECCCC-EEEEEeCCEEEEEECCCCC-EEEEEEec----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-E
Confidence 458888765 8899899999999997432 22222111 134568999999999999999999999999986531 1
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i 182 (1134)
+. .+.++...+.+++.++..+++|+.++.+..|.+.......
T Consensus 182 ~~----------------------~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~---------------- 223 (420)
T 4gga_A 182 LR----------------------NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV---------------- 223 (420)
T ss_dssp EE----------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE----------------
T ss_pred EE----------------------EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceee----------------
Confidence 11 0123345678888899999999999999876544321110
Q ss_pred cccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEE
Q 001165 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCA 262 (1134)
Q Consensus 183 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 262 (1134)
..+.+|...+..+.++|+++.+++++.||.+.+|+............. ...+...+.++
T Consensus 224 -------------------~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~ 282 (420)
T 4gga_A 224 -------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--FTQHQGAVKAV 282 (420)
T ss_dssp -------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE--ECCCSSCEEEE
T ss_pred -------------------EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee--ecccCCceeee
Confidence 023467788999999999999999999999999998654321110000 11245678999
Q ss_pred EECCCCC-EEEE--eeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE--C
Q 001165 263 SIAPEQQ-ILAV--GTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW--K 337 (1134)
Q Consensus 263 a~spdg~-llAs--G~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~--~ 337 (1134)
+|+|.+. ++++ |+.|++|++||+. +++....+.. ...|.++.|+|+++.+++++ .
T Consensus 283 ~~~p~~~~~la~~~gs~D~~I~iwd~~---------------t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~ 342 (420)
T 4gga_A 283 AWCPWQSNVLATGGGTSDRHIRIWNVC---------------SGACLSAVDA-----HSQVCSILWSPHYKELISGHGFA 342 (420)
T ss_dssp EECTTCTTEEEEEECTTTCEEEEEETT---------------TTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTT
T ss_pred eeCCCcccEEEEEeecCCCEEEEEeCC---------------ccccceeecc-----ccceeeeeecCCCCeEEEEEecC
Confidence 9999654 5555 4579999999999 7777766653 46799999999999988875 7
Q ss_pred CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCce
Q 001165 338 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 394 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~ 394 (1134)
||.|+|||+.+++++.++.+| .+.|++++|+|++ ..++||+ ++++|++....
T Consensus 343 d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 343 QNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSCSS
T ss_pred CCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCCCC
Confidence 899999999999999999998 7899999999999 8899887 89999986543
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=1.5e-24 Score=258.97 Aligned_cols=305 Identities=10% Similarity=0.076 Sum_probs=224.2
Q ss_pred EEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeC-CCeEEEEecCC
Q 001165 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDG 152 (1134)
Q Consensus 74 ~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d-~~~llv~t~dg 152 (1134)
++++|+++|++++.||+|++||+.... .+. .+.++...|.++... +..+++|+.||
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~-~~~----------------------~~~~h~~~V~~l~~~~~~~l~s~s~dg 183 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKK-FLL----------------------QLSGHDGGVWALKYAHGGILVSGSTDR 183 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTE-EEE----------------------EECCCSSCEEEEEECSTTEEEEEETTS
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCc-EEE----------------------EEeCCCcCEEEEEEcCCCEEEEEeCCC
Confidence 455577899999999999999985431 111 011233445555433 23888999999
Q ss_pred cEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEc--CCCCeEEEEEcCC
Q 001165 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC--LPMRLLFVLYSNG 230 (1134)
Q Consensus 153 ~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs--p~~~~la~~~sDG 230 (1134)
+|.+|+.+.. .... .+.+|...|.+++|+ ++++.+++++.||
T Consensus 184 ~i~vwd~~~~--~~~~----------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 184 TVRVWDIKKG--CCTH----------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp CEEEEETTTT--EEEE----------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred CEEEEECCCC--cEEE----------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 9998665432 1110 234678889999998 5778999999999
Q ss_pred eEEEEEeccCCcccccee-----------------cccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccccee
Q 001165 231 QLMSCSVSKKGLKLAEFI-----------------KIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1134)
Q Consensus 231 ~v~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~ 293 (1134)
.+.+|++........... ......+...+.+ ++++++++++|+.||+|++||+.
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~------- 298 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVA------- 298 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEETTSCEEEEETT-------
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeCCCeEEEEECC-------
Confidence 999999865432110000 0000012234444 47889999999999999999998
Q ss_pred eeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCC
Q 001165 294 TVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 373 (1134)
Q Consensus 294 ~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~ 373 (1134)
+++.+.++.+ |.+.|.+++|+|||+.|++|+.||.|++||+.+++++.++.+| ...|.++.+++
T Consensus 299 --------~~~~~~~~~~----~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~--- 362 (464)
T 3v7d_B 299 --------QMKCLYILSG----HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLSD--- 362 (464)
T ss_dssp --------TTEEEEEECC----CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECS---
T ss_pred --------CCcEEEEecC----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEcC---
Confidence 7788888777 9999999999999999999999999999999999999999887 77899999973
Q ss_pred CCcceEEEcc---eeEEEeCCCceEEEEe-cCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccc
Q 001165 374 CKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 448 (1134)
Q Consensus 374 ~~~~~l~sgs---~i~~W~~~~~~l~~~~-~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~ 448 (1134)
..+++|+ ++++|+..+++..... ..+...+..+++ ++.+++++ |+++++|++..++..
T Consensus 363 ---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~------------- 425 (464)
T 3v7d_B 363 ---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV------------- 425 (464)
T ss_dssp ---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE-------------
T ss_pred ---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE-------------
Confidence 5677766 8999999887655443 333445578888 78888887 899999998765531
Q ss_pred ccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001165 449 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 486 (1134)
Q Consensus 449 w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i 486 (1134)
......|..+|.+++|+ ++..+++++.+|.+
T Consensus 426 ------~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 426 ------HANILKDADQIWSVNFK-GKTLVAAVEKDGQS 456 (464)
T ss_dssp ------ESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ------ehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence 12245788999999998 45566666778877
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=3.9e-25 Score=252.69 Aligned_cols=295 Identities=12% Similarity=0.106 Sum_probs=200.2
Q ss_pred eeEEEeecCe-EEEEEc----CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCC---ceEEEEEeCCCEEEEE
Q 001165 23 QIIYFKVNNG-LLLIAS----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSSLYLHIF 94 (1134)
Q Consensus 23 ~iv~fS~dg~-llAs~s----~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD---g~~Lav~t~dg~l~lw 94 (1134)
..++|+|+|. ++|+++ |++|+||+...+... .... ..+.+.+.+++|+|+ |++|++++.||.|++|
T Consensus 22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-LLRE-----IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-EEEE-----EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-ceee-----ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 3489999985 555553 679999999744322 1111 123567899999999 6999999999999999
Q ss_pred EEEecCccee-cCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccC
Q 001165 95 KVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1134)
Q Consensus 95 ~l~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~ 173 (1134)
++........ ...|.. .+.++.|.+. .+++++++.+++++.||.+.+|+..........+.
T Consensus 96 d~~~~~~~~~~~~~~~~---~v~~~~~~~~------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--- 157 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKE---IINAIDGIGG------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME--- 157 (357)
T ss_dssp CTTSCSSCSEEECCCSS---CEEEEEEESG------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC---
T ss_pred eCCCCCccEEEEEeccc---ceEEEeeccc------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc---
Confidence 9976431221 111211 1222222110 03467888999999999998865443210110000
Q ss_pred CCccccccccccCCCccccccCCCcccccccCCCcccEEEEE----EcCCCCeEEEEEcCCeEEEEEeccCCccccceec
Q 001165 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE----LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (1134)
Q Consensus 174 ~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~----fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~ 249 (1134)
.........+.++. |+|+++.+++++.||.+.+|++.........
T Consensus 158 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--- 206 (357)
T 3i2n_A 158 ----------------------------PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--- 206 (357)
T ss_dssp ----------------------------CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred ----------------------------ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec---
Confidence 00111244778887 7899999999999999999998754431111
Q ss_pred ccccCCCCCeEEEEECC---CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEEC
Q 001165 250 IDKELGSGDAVCASIAP---EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWT 326 (1134)
Q Consensus 250 ~~~~~~~~~~~~va~sp---dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fS 326 (1134)
.+...+++++|+| +++.+++|+.||.|++||+...... ..+ ....+.+ |.+.|++++|+
T Consensus 207 ----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~---------~~~~~~~----~~~~v~~~~~~ 268 (357)
T 3i2n_A 207 ----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGF---------ASVSEKA----HKSTVWQVRHL 268 (357)
T ss_dssp ----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEE---------EEEEEEC----CSSCEEEEEEE
T ss_pred ----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cce---------eeeccCC----CcCCEEEEEEC
Confidence 1347899999999 9999999999999999999832110 000 0112224 99999999999
Q ss_pred CCCC-EEEEEECCCcEEEEecCCC-------------------eeEEEeccCCCCceeeeEEcCCCCCCcceEE-Ecc--
Q 001165 327 PDNS-AFAVGWKSRGLTVWSVSGC-------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT-- 383 (1134)
Q Consensus 327 PDG~-~Lasg~~Dg~I~vWdv~~~-------------------~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~-sgs-- 383 (1134)
|+|+ +|++|+.||.|++||+..+ .++.++.+| ...|++++|+|++ +.++ +|+
T Consensus 269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~~s~~~d 343 (357)
T 3i2n_A 269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISSLDWSPDK----RGLCVCSSFD 343 (357)
T ss_dssp TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEEEEECSSS----TTEEEEEETT
T ss_pred CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeEEEEcCCC----CeEEEEecCC
Confidence 9999 8999999999999998643 356677776 6789999999998 7776 555
Q ss_pred -eeEEEeCCCceE
Q 001165 384 -SMMQWDEYGYRL 395 (1134)
Q Consensus 384 -~i~~W~~~~~~l 395 (1134)
.+++|+....++
T Consensus 344 ~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 344 QTVRVLIVTKLNK 356 (357)
T ss_dssp SEEEEEEECC---
T ss_pred CcEEEEECCCccc
Confidence 888888876543
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=2.2e-25 Score=264.81 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=196.8
Q ss_pred eEEEee-cCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcC-CceEEEEEeCCCEEEEEEEEecC
Q 001165 24 IIYFKV-NNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITE 100 (1134)
Q Consensus 24 iv~fS~-dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~dg~l~lw~l~~~~ 100 (1134)
.++|+| ++.+||+++ |++|+|||.+..... .... ...|.+.+.+++|+| |+++|++++.||+|++||+....
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 389999 467999987 679999999633222 1111 112567899999999 78999999999999999985421
Q ss_pred cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 101 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
.......+... ......++.+++..+++|+.+|.|++|+.++....
T Consensus 199 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--------------- 244 (435)
T 4e54_B 199 LRVFASSDTIN-------------------IWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--------------- 244 (435)
T ss_dssp EEEEECCSSCS-------------------CCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC---------------
T ss_pred eeEEeccCCCC-------------------ccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE---------------
Confidence 11111111000 00112456778899999999999998765432111
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCe
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDA 259 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1134)
.+.+|...|.+++|+|+++ ++++++.||.+.+|++........... ...+...+
T Consensus 245 ----------------------~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~---~~~h~~~v 299 (435)
T 4e54_B 245 ----------------------NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY---SLPHRHPV 299 (435)
T ss_dssp ----------------------CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB---CCBCSSCE
T ss_pred ----------------------EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE---eeeccccc
Confidence 2346788999999999986 678899999999999865432211100 01245789
Q ss_pred EEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCC--CcCeEEEEECCCCCEEEEEE-
Q 001165 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDD--TGPVSCIAWTPDNSAFAVGW- 336 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h--~g~V~~l~fSPDG~~Lasg~- 336 (1134)
++++|+|+|++|++|+.||+|+|||+.+ ++....+.+....+ ...+....|+|++..+++++
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQ---------------WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY 364 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSS---------------SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCC---------------CccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence 9999999999999999999999999983 22222222100001 11223345666666665553
Q ss_pred -----------CCCcEEEEecCCCeeEEEeccCCCCceeee-EEcCCCCCCcceEEEcc--eeEEEeCCCceE
Q 001165 337 -----------KSRGLTVWSVSGCRLMSTIRQISLSSISSP-IVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 395 (1134)
Q Consensus 337 -----------~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv-~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l 395 (1134)
.++.|++||..++.+++++.+++...|.++ +|+|++ ..+++|+ ++++|+++.++.
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg----~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG----DTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS----SCEEEECSSEEEECCCC----
T ss_pred CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC----CEEEEEcCCcEEEEECCcCee
Confidence 346899999999999998876657788887 699999 8888877 899999987764
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=6.8e-25 Score=250.67 Aligned_cols=309 Identities=11% Similarity=0.078 Sum_probs=201.1
Q ss_pred hhcceeEEEEcCCceEEE-EEeC---CCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEE--Eee
Q 001165 66 REGENLQAVWSPDTKLIA-VVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIV 139 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~La-v~t~---dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s 139 (1134)
+.+.+.+++|+|||..++ +++. ||+|++|++..+...... .. ++...|. ++.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-------------~~---------~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-------------EI---------EKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-------------EE---------EESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-------------ee---------cccCcEEEEEEc
Confidence 456789999999996554 5554 899999999754211110 00 1112233 445
Q ss_pred eC---CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEE-
Q 001165 140 SD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE- 215 (1134)
Q Consensus 140 ~d---~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~- 215 (1134)
++ ++.+++++.+|.+.+|+.+.... .. ..+.+|...|.++.
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~----------------------------------~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEM-PV----------------------------------YSVKGHKEIINAIDG 119 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSS-CS----------------------------------EEECCCSSCEEEEEE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCc-cE----------------------------------EEEEecccceEEEee
Confidence 55 58899999999999865543210 11 02346778899984
Q ss_pred -----EcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEE----ECCCCCEEEEeeeCCeEEEEecc
Q 001165 216 -----LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCAS----IAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 216 -----fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va----~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
|+|+++.+++++.||.+.+|++...... ........-.....+.+++ |+|+++++++|+.||.|++||+.
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc
Confidence 5789999999999999999998754311 1111110001124678888 78999999999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC---CCCEEEEEECCCcEEEEecCCCeeEEEec-----cC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIR-----QI 358 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~-----~h 358 (1134)
+++.... .. |.+.|.+++|+| +|..|++|+.||.|++||+.++.....+. +|
T Consensus 199 ---------------~~~~~~~-~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 258 (357)
T 3i2n_A 199 ---------------NMALRWE-TN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH 258 (357)
T ss_dssp ---------------TTEEEEE-EE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred ---------------cCceeee-cC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence 5554332 33 889999999999 99999999999999999997655433332 33
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
...|++++|+|++ .. .+++++.|+.+++|++..+......
T Consensus 259 -~~~v~~~~~~~~~----~~-----------------------------------~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 259 -KSTVWQVRHLPQN----RE-----------------------------------LFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp -SSCEEEEEEETTE----EE-----------------------------------EEEEEETTSEEEEEEEECCSCC--C
T ss_pred -cCCEEEEEECCCC----Cc-----------------------------------EEEEEeCCCcEEEeecCCCcccccc
Confidence 4456666665554 20 3445556666666665543321000
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEE-EEeCCCeE-EEEccCC
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLA-VAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LA-sgg~dG~i-lwd~~sg 493 (1134)
.....+...-...+....+.+|..+|++++|+|+|++|| +|+.||.+ +||+.+.
T Consensus 299 -~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 299 -DSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp -CTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred -cCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 000000000001122446778999999999999999999 79999999 9998764
No 79
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-24 Score=242.64 Aligned_cols=278 Identities=12% Similarity=0.107 Sum_probs=211.7
Q ss_pred CCcee--EEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE
Q 001165 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1134)
Q Consensus 20 ~~~~i--v~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l 96 (1134)
|..+| ++| +++++||+++ |++|+||+.... ....... .+.+.+.+++|+||+++|++++.||.+++|++
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-WLGTVVY------TGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-EEEEEEE------ECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-EEEEEee------cCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 44444 788 8998888876 678999999643 3222222 13567899999999999999999999999998
Q ss_pred EecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCc
Q 001165 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1134)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~ 176 (1134)
........ +. .+.++...|.++..+++.+++++.+|.+.+|+ .. ...
T Consensus 89 ~~~~~~~~----------~~----------~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~--~~~--------- 135 (313)
T 3odt_A 89 FATSGEDP----------LY----------TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG--SLV--------- 135 (313)
T ss_dssp TCCTTSCC-----------C----------EECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT--EEE---------
T ss_pred eecCCCCc----------cc----------chhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC--cEE---------
Confidence 64321100 00 11233456778888899999999999998865 11 111
Q ss_pred cccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCC
Q 001165 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG 255 (1134)
Q Consensus 177 ~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~ 255 (1134)
.....+...+.++.|+| +++.+++++.||.+.+|+.... ..... ..+
T Consensus 136 -------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~---~~~ 183 (313)
T 3odt_A 136 -------------------------YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV----IKTFS---GIH 183 (313)
T ss_dssp -------------------------EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE----EEEEC---SSC
T ss_pred -------------------------EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce----EEEEe---ccC
Confidence 01335678899999988 8999999999999999983211 11111 114
Q ss_pred CCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 256 ~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
...+++++|+|+++ +++|+.||.|++||+. +++.+..+.+ |.++|++++|+||| .|++|
T Consensus 184 ~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~---------------~~~~~~~~~~----~~~~i~~~~~~~~~-~l~~~ 242 (313)
T 3odt_A 184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDMH---------------TGDVLRTYEG----HESFVYCIKLLPNG-DIVSC 242 (313)
T ss_dssp SSCEEEEEEEETTE-EEEEETTSEEEEEETT---------------TCCEEEEEEC----CSSCEEEEEECTTS-CEEEE
T ss_pred cccEEEEEEcCCCe-EEEccCCCeEEEEECC---------------chhhhhhhhc----CCceEEEEEEecCC-CEEEE
Confidence 47789999999998 9999999999999998 7778888777 99999999999999 69999
Q ss_pred ECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEE
Q 001165 336 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLY 396 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~ 396 (1134)
+.||.|++||+.++++..++..| ...|.+++|+|++ ..++++. .+++|+.+++++.
T Consensus 243 ~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 243 GEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNG----DIIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTS----CEEEEETTSCEEEEESCGGGCC
T ss_pred ecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCC----CEEEEeCCCcEEEEeCCCCcee
Confidence 99999999999999999998877 6789999999998 5444333 8889998776543
No 80
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=6e-25 Score=260.12 Aligned_cols=264 Identities=11% Similarity=0.083 Sum_probs=188.0
Q ss_pred ccEEEEEEcCCC--CeEEEEEcCCeEEEEEeccCCccc-------cce---------------------------ecccc
Q 001165 209 SAIIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKL-------AEF---------------------------IKIDK 252 (1134)
Q Consensus 209 ~~V~~i~fsp~~--~~la~~~sDG~v~l~~~~~~~~~~-------~~~---------------------------~~~~~ 252 (1134)
..|.+++|+|++ +.+++++.||.+.+|++....... ..+ .....
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 568899999998 789999999999999986422100 000 00000
Q ss_pred cCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CE
Q 001165 253 ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SA 331 (1134)
Q Consensus 253 ~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~ 331 (1134)
..+...+++++|+|++++||+| .||+|++||+.........+.... .++. +|.+.|++++|+|+| +.
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~----~~~~~v~~~~~~p~~~~~ 241 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKP-------ANME----ELTEVITAAEFHPNSCNT 241 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC-------SSGG----GCCCCEEEEEECSSCTTE
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccc-------cccc----ccCcceEEEEECCCCCcE
Confidence 1245779999999999999999 799999999983221111111000 0122 399999999999999 99
Q ss_pred EEEEECCCcEEEEecCCCee----EEEeccCCC-----------CceeeeEEcCCCCCCcceEEEcc--eeEEEeCCC-c
Q 001165 332 FAVGWKSRGLTVWSVSGCRL----MSTIRQISL-----------SSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYG-Y 393 (1134)
Q Consensus 332 Lasg~~Dg~I~vWdv~~~~l----~~tl~~h~~-----------~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~-~ 393 (1134)
|++|+.||+|++||+.++.. ..++.+|.. ..|.+++|+|++ ..+++|+ .+++||... +
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~~~v~iwd~~~~~ 317 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG----RYMMTRDYLSVKVWDLNMEN 317 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS----SEEEEEESSEEEEEETTCCS
T ss_pred EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC----CEEEEeeCCeEEEEeCCCCc
Confidence 99999999999999988776 677877632 289999999998 8888876 899999986 7
Q ss_pred eEEEEecCCCccE-----------------EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccc---cc---
Q 001165 394 RLYAIEEGSSERV-----------------LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL---KI--- 449 (1134)
Q Consensus 394 ~l~~~~~~h~~~v-----------------~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~---~w--- 449 (1134)
+++....+|...+ ++|++ ++.+++++.|+++++|++..+.. + ...++..+.. ..
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~ 395 (447)
T 3dw8_B 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD-I-TLEASRENNKPRTVLKPR 395 (447)
T ss_dssp SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE-E-EEECCSTTCCTTCBCCCC
T ss_pred cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc-e-eeeecccccccccccCCc
Confidence 7777777775311 67888 88999999999999999866543 2 2222221110 00
Q ss_pred --------cccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEc
Q 001165 450 --------LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 490 (1134)
Q Consensus 450 --------~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~ 490 (1134)
...........++.+|.+++|+|+|++||+|+.++..+|+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred cccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 00000111224566799999999999999999999778864
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2e-24 Score=253.42 Aligned_cols=276 Identities=16% Similarity=0.127 Sum_probs=215.8
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
+.++.++++.+++++.+|.|++|+.+....... ....+...|.++
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------------------------------~~~~~~~~v~~v 140 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------------------------------AETDESTYVASV 140 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------------------------EECCTTCCEEEE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------------------------------eecCCCCCEEEE
Confidence 456677778899999999999876543211100 112367889999
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceee
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~ 294 (1134)
+|+|+++.+++++.||.+.+|+........ ... .+...+.+++|+ ++.+++|+.||+|++||+..
T Consensus 141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~----~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~------- 205 (401)
T 4aez_A 141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLR--TMA----GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRI------- 205 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEE--EEC----CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS-------
T ss_pred EECCCCCEEEEECCCCeEEEEECcCCeEEE--Eec----CCCCceEEEEEC--CCEEEEEcCCCCEEEEeccc-------
Confidence 999999999999999999999986543211 111 245788999994 57999999999999999983
Q ss_pred eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCC
Q 001165 295 VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 374 (1134)
Q Consensus 295 l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~ 374 (1134)
.+.....+.+ |.+.|.+++|+|||++|++|+.||.|++||+.++....++.+| ...|.+++|+|++.
T Consensus 206 -------~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~- 272 (401)
T 4aez_A 206 -------ANHQIGTLQG----HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQS- 272 (401)
T ss_dssp -------SSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTST-
T ss_pred -------CcceeeEEcC----CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCC-
Confidence 2334455555 9999999999999999999999999999999998888888877 67899999999762
Q ss_pred CcceEEEcc-----eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEe--eecCCcEEeeeeeeCCCeEEEeecCCC
Q 001165 375 KYEPLMSGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN--RGVSGMTYARQVIYGEDRLLVVQSEDT 444 (1134)
Q Consensus 375 ~~~~l~sgs-----~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S--~s~d~ti~~w~l~~~~~~l~l~~g~~~ 444 (1134)
..+++|+ .+++|+..+++++.... +...+ +++++ ++.+++ |+.|+.+++|++..+...
T Consensus 273 --~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--------- 340 (401)
T 4aez_A 273 --NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--------- 340 (401)
T ss_dssp --TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE---------
T ss_pred --CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce---------
Confidence 4555531 89999999998887775 44566 56666 888887 558999999998654321
Q ss_pred ccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 445 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 445 ~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
....+.+|..+|.+++|+|||++|++|+.||.+ +|++.+++
T Consensus 341 ---------~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 341 ---------KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ---------EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ---------eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 022456899999999999999999999999999 99998874
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.94 E-value=1.4e-23 Score=249.67 Aligned_cols=309 Identities=10% Similarity=0.107 Sum_probs=240.9
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEE
Q 001165 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1134)
Q Consensus 135 V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i 214 (1134)
+.|+.++++.+++|+.||.|++|+.+.. ... ..+.+|...|.++
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~----------------------------------~~~~~h~~~v~~~ 165 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCL----------------------------------RTLVGHTGGVWSS 165 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTC--CEE----------------------------------EECCCCSSCEEEE
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCC--cEE----------------------------------EEEcCCCCCEEEE
Confidence 5789999999999999999998765422 111 0234678899999
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceee
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~ 294 (1134)
.|+ ++.+++++.||++.+|+....... ..+. .+...+.+++|+ ++.+++|+.||+|++||+.
T Consensus 166 ~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~----~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~-------- 227 (445)
T 2ovr_B 166 QMR--DNIIISGSTDRTLKVWNAETGECI--HTLY----GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE-------- 227 (445)
T ss_dssp EEE--TTEEEEEETTSCEEEEETTTTEEE--EEEC----CCSSCEEEEEEE--TTEEEEEETTSEEEEEESS--------
T ss_pred Eec--CCEEEEEeCCCeEEEEECCcCcEE--EEEC----CCCCcEEEEEec--CCEEEEEeCCCEEEEEECC--------
Confidence 998 579999999999999998654321 1111 245678899986 5679999999999999999
Q ss_pred eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCC
Q 001165 295 VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 374 (1134)
Q Consensus 295 l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~ 374 (1134)
+++.+..+.+ |.++|.+++| +|+.+++|+.||.|++||+.++.++.++.+| ...|.++.+ ++
T Consensus 228 -------~~~~~~~~~~----~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~-- 289 (445)
T 2ovr_B 228 -------TGQCLHVLMG----HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DG-- 289 (445)
T ss_dssp -------SCCEEEEEEC----CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CS--
T ss_pred -------CCcEEEEEcC----CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CC--
Confidence 7777788777 9999999999 8999999999999999999999999999887 678999999 44
Q ss_pred CcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccc
Q 001165 375 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 450 (1134)
Q Consensus 375 ~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~ 450 (1134)
..+++|+ ++++||..+++++....+|...+..+.+ ++.+++++.|+++++||+..+..
T Consensus 290 --~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------- 351 (445)
T 2ovr_B 290 --IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC---------------- 351 (445)
T ss_dssp --SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----------------
T ss_pred --CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE----------------
Confidence 6677766 8999999999999999999999988888 88999999999999999865443
Q ss_pred ccccceeec---cCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE-EeC-CccceeeeEEEEEEeeCCEEEEE-E
Q 001165 451 HLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFG-DITQEQKIQSKGLLWLGKIIVVC-N 523 (1134)
Q Consensus 451 ~~~~~~~~~---~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk-~F~-~~~~e~~~~v~gl~W~~~~lv~~-~ 523 (1134)
...+. .|..+|.+++|+ +++|++|+.||.+ +||+.+++.. .+. .......-.+..+.|.++..+++ +
T Consensus 352 ----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 352 ----LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp ----EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred ----EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 22333 388899999995 6899999999999 9999988642 221 11112224577889987754433 2
Q ss_pred EecCCCeeEEEEEeCC
Q 001165 524 YIDSSNTYELLFYPRY 539 (1134)
Q Consensus 524 ~~~~~~~~eLrly~~~ 539 (1134)
..+......|.+|+++
T Consensus 426 ~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFD 441 (445)
T ss_dssp CSSSSSCCEEEEEECC
T ss_pred ccCCCCccEEEEEECC
Confidence 2222234568888774
No 83
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=4.4e-24 Score=240.03 Aligned_cols=279 Identities=15% Similarity=0.177 Sum_probs=206.3
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcc
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~ 102 (1134)
.++++|+++ +||++.|++|+|||...+ ..+...... .+.+.+.+++|+|||++||+|+.||+|++|++..+. .
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg-~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~ 101 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSASSG-DILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-R 101 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTC-CEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-E
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECCCC-CEEEEEEec----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-e
Confidence 568999987 889999999999999743 333322211 134568999999999999999999999999986531 1
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i 182 (1134)
+. .+.++...+.+++.++..+++++.++.+..+........ .
T Consensus 102 ~~----------------------~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~-~--------------- 143 (318)
T 4ggc_A 102 LR----------------------NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH-V--------------- 143 (318)
T ss_dssp EE----------------------EEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE-E---------------
T ss_pred EE----------------------EecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee-E---------------
Confidence 11 011233456778888899999999998876543322111 0
Q ss_pred cccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEE
Q 001165 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCA 262 (1134)
Q Consensus 183 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 262 (1134)
..+.+|...+..+.++++++.+++++.||.+.+|++............ ...+...+.++
T Consensus 144 -------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~~ 202 (318)
T 4ggc_A 144 -------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--FTQHQGAVKAV 202 (318)
T ss_dssp -------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--ECCCCSCEEEE
T ss_pred -------------------EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--ecccCCceEEE
Confidence 023467788999999999999999999999999998654322111110 11234678899
Q ss_pred EECCCCCE---EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE--C
Q 001165 263 SIAPEQQI---LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW--K 337 (1134)
Q Consensus 263 a~spdg~l---lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~--~ 337 (1134)
+++|++.. +++|+.+++|++|+.. .+....... |...|..+.|+|++..+++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~---------------~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVC---------------SGACLSAVD-----AHSQVCSILWSPHYKELISGHGFA 262 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETT---------------TCCEEEEEE-----CSSCEEEEEEETTTTEEEEEECTT
T ss_pred EecCCCCcEEEEEecCCCCEEEEEecc---------------ccccccccc-----ceeeeeeeeecccccceEEEEEcC
Confidence 99997663 4577889999999988 333333221 678899999999999887765 7
Q ss_pred CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCC
Q 001165 338 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 392 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~ 392 (1134)
||.|+|||+.+++++.++.+| .+.|++++|+|++ ..++||+ ++++|++..
T Consensus 263 d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 263 QNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSC
T ss_pred CCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCC
Confidence 899999999999999999998 7899999999998 7788776 777887643
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-24 Score=240.05 Aligned_cols=276 Identities=11% Similarity=0.115 Sum_probs=216.4
Q ss_pred cccceEEEee-eCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCc
Q 001165 130 EKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (1134)
Q Consensus 130 ~~~~~V~~~s-~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~ 208 (1134)
++...|.++. ++++.+++++.||.|++|+.+...... ....+.
T Consensus 16 ~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~------------------------------------~~~~~~ 59 (313)
T 3odt_A 16 GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT------------------------------------VVYTGQ 59 (313)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE------------------------------------EEEECS
T ss_pred CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE------------------------------------EeecCC
Confidence 3444555443 678899999999999987664321110 123457
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc-cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
..|.+++|+|+++.+++++.||.+.+|++....... ..... .+...+++++| +++.+++|+.||+|++||..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~- 132 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI----GHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG- 132 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC----CCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh----hcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-
Confidence 889999999999999999999999999986533211 11111 24577889999 57799999999999999932
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeee
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 366 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv 366 (1134)
+....+.+ |.++|.+++|+| +++.+++++.||.|++|| .......+...+...|.++
T Consensus 133 ----------------~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~ 190 (313)
T 3odt_A 133 ----------------SLVYNLQA----HNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHL 190 (313)
T ss_dssp ----------------EEEEEEEC----CSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEE
T ss_pred ----------------cEEEeccc----CCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEE
Confidence 33444444 999999999999 999999999999999999 4566777777447899999
Q ss_pred EEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeec
Q 001165 367 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQS 441 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g 441 (1134)
+++|++ . +++|+ .+++|+..+++++....+|...+ +++++...+++++.|+++++|++..+..
T Consensus 191 ~~~~~~----~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------- 258 (313)
T 3odt_A 191 AVVDDG----H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL------- 258 (313)
T ss_dssp EEEETT----E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE-------
T ss_pred EEcCCC----e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce-------
Confidence 999998 6 66655 89999999999999999999988 4555533688999999999999766543
Q ss_pred CCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE
Q 001165 442 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 496 (1134)
Q Consensus 442 ~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk 496 (1134)
...+..|..+|.+++|+|+|+ +++++.||.+ +||+.++++.
T Consensus 259 -------------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 259 -------------KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp -------------EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred -------------eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 355677888999999999999 5679999999 9999988653
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=1.1e-24 Score=253.36 Aligned_cols=238 Identities=12% Similarity=0.071 Sum_probs=186.8
Q ss_pred CCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC---CCEEEEeeeCCeEE
Q 001165 206 PISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE---QQILAVGTRRGVVE 281 (1134)
Q Consensus 206 ~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd---g~llAsG~~dg~V~ 281 (1134)
+|...|.+++|+| +++.+++++.||.+.+|++........ . .....+.+++++|. +.++++|+.||.|+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV--F-----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE--E-----ECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee--c-----cCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 5678899999999 778999999999999999865432211 1 12367889999885 45999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCe-eEEEe----
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCR-LMSTI---- 355 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~-l~~tl---- 355 (1134)
+||+. +++.+..+.+ |.++|++++|+|+|. .|++|+.||.|++||+..+. ....+
T Consensus 170 ~~d~~---------------~~~~~~~~~~----~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 170 LCDLK---------------SGSCSHILQG----HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp EEESS---------------SSCCCEEECC----CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred EEeCC---------------CcceeeeecC----CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 99998 6666666666 999999999999999 59999999999999997654 44444
Q ss_pred -----------ccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCC-----ccE-EEEec--CC
Q 001165 356 -----------RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS-----ERV-LIFSF--GK 413 (1134)
Q Consensus 356 -----------~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~-----~~v-~~~s~--~k 413 (1134)
..| ...|.+++|+|++ ..+++|+ .+++|+..+++......++. ..+ ..... ..
T Consensus 231 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 231 GKKSQAVESANTAH-NGKVNGLCFTSDG----LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp TCSCCCTTTSSCSC-SSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred cccceeeccccccc-cCceeEEEEcCCC----CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 234 6789999999998 8888876 89999998877544432221 111 22222 56
Q ss_pred EEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 414 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 414 ~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
.++.++.++.+++|++..+.. ...+.+|..+|++++|+|+|++||+|+.||.+ +||+.+
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~--------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQ--------------------ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCE--------------------EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred eEEEEecCCEEEEEECcCCcc--------------------eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 777888899999999766543 45677899999999999999999999999999 999988
Q ss_pred Cc
Q 001165 493 KK 494 (1134)
Q Consensus 493 g~ 494 (1134)
++
T Consensus 366 ~~ 367 (408)
T 4a11_B 366 YE 367 (408)
T ss_dssp --
T ss_pred CC
Confidence 64
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=1.6e-24 Score=251.92 Aligned_cols=295 Identities=11% Similarity=0.095 Sum_probs=201.4
Q ss_pred eeEEEeecC-eEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcC-CceEEEEEeCCCEEEEEEEEec
Q 001165 23 QIIYFKVNN-GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQIT 99 (1134)
Q Consensus 23 ~iv~fS~dg-~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~dg~l~lw~l~~~ 99 (1134)
..++|+|+| ++||+++ |++|+||+...... ...... ..+.+.+.+++|+| |++.|++++.||+|++||+...
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQG----MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS 151 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECC----CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred EEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeec----CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence 338999999 8998876 57999999974432 222211 12457899999999 7899999999999999999632
Q ss_pred CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccc
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i 179 (1134)
...... .+... .......++++++..+++++.+|.|.+|+.+++...
T Consensus 152 ~~~~~~-~~~~~------------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------- 198 (383)
T 3ei3_B 152 VIQVFA-KTDSW------------------DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIF-------------- 198 (383)
T ss_dssp EEEEEE-CCCCS------------------SCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEE--------------
T ss_pred ceEEEe-ccCCC------------------CCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEE--------------
Confidence 111111 11100 001123456778899999999999998765322110
Q ss_pred ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCCC
Q 001165 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD 258 (1134)
Q Consensus 180 ~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1134)
.+..|...|.+++|+|+++ .+++++.||.+.+|++........ .... ..+...
T Consensus 199 -----------------------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~--~~~~~~ 252 (383)
T 3ei3_B 199 -----------------------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS-YIAE--MPHEKP 252 (383)
T ss_dssp -----------------------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC-EEEE--EECSSC
T ss_pred -----------------------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc-eEEE--ecCCCc
Confidence 1335778999999999998 999999999999999975332110 1110 124578
Q ss_pred eEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeec---cCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 259 AVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD---WGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 259 ~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~---~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
+++++|+| ++++|++|+.||+|++||+.+.... ..+.... .+....+.. .....+.+..++|+|||++ +
T Consensus 253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~s~dg~~--s 325 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKA----TWHPMYDLIVAGRYPDDQL--L 325 (383)
T ss_dssp EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCC----EECSSSSEEEEECBCCTTT--C
T ss_pred eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEE----eccCCCCceEEEecCCccc--c
Confidence 99999999 9999999999999999999843321 1111000 000000000 0001245566777788777 7
Q ss_pred EECCCcEEEEecCCCeeEEEeccCC-CCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCC
Q 001165 335 GWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYG 392 (1134)
Q Consensus 335 g~~Dg~I~vWdv~~~~l~~tl~~h~-~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~ 392 (1134)
|+.||.|++||+.+++++.++.+++ ...+..++|+|++ ..+++|+ .+++|++++
T Consensus 326 ~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g----~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 326 LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG----DVLASGMGFNILIWNRED 382 (383)
T ss_dssp TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS----SEEEEEETTEEEEEECC-
T ss_pred cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc----cEEEEecCCcEEEEecCC
Confidence 7899999999999999999998753 4556777999998 7888776 888898764
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=3.3e-25 Score=257.34 Aligned_cols=289 Identities=7% Similarity=0.013 Sum_probs=188.1
Q ss_pred ceeEEEeecCeEEEEEcC--------CeEEEeecCCccee----EEEeecChhhHH-hhcceeEEEEcCCceEEEEEe--
Q 001165 22 QQIIYFKVNNGLLLIASP--------CHIELWSSSQHKVR----LGKYKRDSESVQ-REGENLQAVWSPDTKLIAVVT-- 86 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~--------~~l~IW~~~~~~~~----l~~~~r~~~sl~-~~G~~~~v~wSPDg~~Lav~t-- 86 (1134)
-..++|+|||++||+++. ++|+||+++..... +..... . .+. +.+.+.++ +|+++.++++.
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~-~-~l~~~~~~v~s~--~~~~~~~~~g~~~ 92 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSE-F-ALEDNDDSPTAI--DASKGIILVGCNE 92 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEE-E-ECCTTSCCCCEE--EEETTEEEEECCC
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeE-E-EccCCCCceEEE--EeCCCEEEEEECC
Confidence 445899999999999763 25999998632210 000000 0 011 12234444 45566777664
Q ss_pred ---------CCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeecccccc--ceEEEeeeCCCeEEEEe--cCCc
Q 001165 87 ---------SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKG--LSVSNIVSDNKHMLLGL--SDGS 153 (1134)
Q Consensus 87 ---------~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~V~~~s~d~~~llv~t--~dg~ 153 (1134)
.|+++++|+++.....+.. .....+. .....+ ..+.+|+|||+.+++|+ .|++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~---------~~~~~~~-----~~~~~~~~~~~v~fSpDg~~la~as~~~d~~ 158 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEF---------LTSVDFD-----ASTNADDYTKLVYISREGTVAAIASSKVPAI 158 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEE---------EEEECSS-----CCCCTTCCEEEEEECTTSSCEEEEESCSSCE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEE---------eeeecee-----ecCCcccCEEEEEEcCCCCEEEEEECCCCCE
Confidence 4678999998765322211 0000000 011111 24568899999988877 4678
Q ss_pred EEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEE
Q 001165 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (1134)
Q Consensus 154 v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~ 233 (1134)
|++|+.. ...... ...+...|.+++|+|+++++++++.++ +.
T Consensus 159 i~iwd~~--~~~~~~-----------------------------------~~~~~~~V~~v~fspdg~~l~s~s~~~-~~ 200 (365)
T 4h5i_A 159 MRIIDPS--DLTEKF-----------------------------------EIETRGEVKDLHFSTDGKVVAYITGSS-LE 200 (365)
T ss_dssp EEEEETT--TTEEEE-----------------------------------EEECSSCCCEEEECTTSSEEEEECSSC-EE
T ss_pred EEEeECC--CCcEEE-----------------------------------EeCCCCceEEEEEccCCceEEecccee-EE
Confidence 8875543 222110 113456799999999999999987555 55
Q ss_pred EEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC----eEEEEeccccccceeeeeeeccCcceEEEEe
Q 001165 234 SCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG----VVELYDLAESASLIRTVSLYDWGMREVYYTF 309 (1134)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg----~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l 309 (1134)
+|.......... .. ...+...+.+++|+|+++.+++++.|+ ++++|++..... .......+
T Consensus 201 ~~~~~~~~~~~~-~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~-----------~~~~~~~~ 265 (365)
T 4h5i_A 201 VISTVTGSCIAR-KT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT-----------SVLRSKQV 265 (365)
T ss_dssp EEETTTCCEEEE-EC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE-----------EEEEEEEE
T ss_pred EEEeccCcceee-ee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee-----------cceeeeee
Confidence 554432221110 00 011335688999999999999999887 688888762211 11122344
Q ss_pred ecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe-ccCCCCceeeeEEcCCCCCCcceEEEcc---ee
Q 001165 310 CRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQISLSSISSPIVKPNQDCKYEPLMSGT---SM 385 (1134)
Q Consensus 310 ~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl-~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i 385 (1134)
.+ |.++|++++|||||++||+|+.|++|+|||+.+++++.++ .+| ...|++++|+||+ +.|+||+ ++
T Consensus 266 ~~----~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg----~~laS~S~D~tv 336 (365)
T 4h5i_A 266 TN----RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDS----TYVASVSAANTI 336 (365)
T ss_dssp ES----SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTS----CEEEEEETTSEE
T ss_pred cC----CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCC----CEEEEEeCCCeE
Confidence 44 9999999999999999999999999999999999998886 455 8899999999998 7777776 77
Q ss_pred EEEeC
Q 001165 386 MQWDE 390 (1134)
Q Consensus 386 ~~W~~ 390 (1134)
++|++
T Consensus 337 rvw~i 341 (365)
T 4h5i_A 337 HIIKL 341 (365)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77775
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=9.5e-24 Score=245.67 Aligned_cols=295 Identities=12% Similarity=0.051 Sum_probs=215.9
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeC--
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSD-- 141 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d-- 141 (1134)
|.+.+.+++|+| ++||+++.||+|++|++......... ..+.. +.++...| .++.++
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~-------~~~~~----------~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-------DKSYS----------HFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-------GGEEE----------EECCTTCEEEEEEEEEEE
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC-------CcceE----------EecCCCcEEEEEEecccc
Confidence 457899999999 79999999999999999764310000 00000 11122233 345666
Q ss_pred --C---CeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCC-----cccE
Q 001165 142 --N---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI-----SSAI 211 (1134)
Q Consensus 142 --~---~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~-----~~~V 211 (1134)
+ ..+++++.+|.|++|+.+........ ....+..+ ...|
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v 124 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKV-------------------------------IFEKLDLLDSDMKKHSF 124 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCE-------------------------------EEEEECCSCTTGGGSCE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccc-------------------------------cceeecccccccCCCcE
Confidence 7 78999999999998765533210000 00012233 5889
Q ss_pred EEEEEc----CCCCe-EEEEEcCCeEEEEEecc------CCccccc---eecc---cccCCCCCeEEEEECCCCCEEEEe
Q 001165 212 IWLELC----LPMRL-LFVLYSNGQLMSCSVSK------KGLKLAE---FIKI---DKELGSGDAVCASIAPEQQILAVG 274 (1134)
Q Consensus 212 ~~i~fs----p~~~~-la~~~sDG~v~l~~~~~------~~~~~~~---~~~~---~~~~~~~~~~~va~spdg~llAsG 274 (1134)
.+++|+ |+++. +++++.||.+.+|++.. ....... .+.. ....+...+++++|+|++ ++++|
T Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 203 (397)
T 1sq9_A 125 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG 203 (397)
T ss_dssp EEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE
T ss_pred EEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE
Confidence 999999 99999 99999999999999976 2211100 1100 001235678999999999 99999
Q ss_pred eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCC---CcCeEEEEECCCCCEEEEEECC---CcEEEEecCC
Q 001165 275 TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDD---TGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSG 348 (1134)
Q Consensus 275 ~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h---~g~V~~l~fSPDG~~Lasg~~D---g~I~vWdv~~ 348 (1134)
+.||.|++||+. +++.+..+.+ ..+| .++|.+++|+|||++|++|+.| |.|++||+.+
T Consensus 204 ~~dg~i~i~d~~---------------~~~~~~~~~~-~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 204 FNNGTVQISELS---------------TLRPLYNFES-QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp CTTSEEEEEETT---------------TTEEEEEEEC-CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred eCCCcEEEEECC---------------CCceeEEEec-cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 999999999998 5555555442 1227 8999999999999999999999 9999999999
Q ss_pred CeeEEEecc-------------CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec------CC----
Q 001165 349 CRLMSTIRQ-------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE------GS---- 402 (1134)
Q Consensus 349 ~~l~~tl~~-------------h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~------~h---- 402 (1134)
++.+.++.+ | ...|.+++|+|++ ..+++|+ .+++|+..+++++.... +|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp CCEEEEECBC--------CCBSB-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred CcccceeccCccccccccccccc-CCcEEEEEECCCC----CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 888989887 6 7789999999998 8888876 89999999999999888 77
Q ss_pred -----------CccE--EEEec-C----------CEEEeeecCCcEEeeeeeeC
Q 001165 403 -----------SERV--LIFSF-G----------KCCLNRGVSGMTYARQVIYG 432 (1134)
Q Consensus 403 -----------~~~v--~~~s~-~----------k~l~S~s~d~ti~~w~l~~~ 432 (1134)
...| +++++ + +.+++++.|+++++|++..+
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 8888 45555 5 68999999999999998654
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.8e-25 Score=259.21 Aligned_cols=328 Identities=11% Similarity=0.045 Sum_probs=210.8
Q ss_pred CCcee--EEEee-cCeEEEEEc-CCeEEEeecCCc--ceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEE
Q 001165 20 SSQQI--IYFKV-NNGLLLIAS-PCHIELWSSSQH--KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHI 93 (1134)
Q Consensus 20 ~~~~i--v~fS~-dg~llAs~s-~~~l~IW~~~~~--~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~l 93 (1134)
|...| ++|+| ||++||+++ |++|+||+.... ... .+......+.+.+.+++|+||+++|++++.||+|++
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV----YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC----CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc----cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 33444 89999 999999987 679999999630 110 000011124567999999999999999999999999
Q ss_pred EEEEec--Cccee-cCCCCCCCcceeeEEEeeceeeccccccceEEEe----eeCCCeEEEEecCCcEEEEecCCccccc
Q 001165 94 FKVQIT--EKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI----VSDNKHMLLGLSDGSLYSISWKGEFYGA 166 (1134)
Q Consensus 94 w~l~~~--~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~----s~d~~~llv~t~dg~v~~~~wd~~~~~~ 166 (1134)
|++... .+... .. +..+..+.+.+.+ ....+.++ .+++..+++++.||.|++|+.... ..
T Consensus 138 wd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~ 204 (437)
T 3gre_A 138 LKVNHYQQESEVKFLN-----CECIRKINLKNFG------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL--ER 204 (437)
T ss_dssp EEEEEEEETTEEEEEE-----EEEEEEEEGGGGS------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--CE
T ss_pred EEeccccCCceeeccc-----cceeEEEEccCcc------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ee
Confidence 999632 11111 10 0122233332211 22334443 367889999999999998654322 11
Q ss_pred eeccccCCCccccccccccCCCccccccCCCcccccccCC--CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc
Q 001165 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL 244 (1134)
Q Consensus 167 ~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~--~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~ 244 (1134)
.. .+.. |...|.+++|+|+++.+++++.||.+.+|++.......
T Consensus 205 ~~----------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 205 LQ----------------------------------IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp EE----------------------------------EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred eE----------------------------------EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 10 1112 67899999999999999999999999999986532211
Q ss_pred cceecccccCCCCCeEEEEEC----CCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc--------
Q 001165 245 AEFIKIDKELGSGDAVCASIA----PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY-------- 312 (1134)
Q Consensus 245 ~~~~~~~~~~~~~~~~~va~s----pdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~-------- 312 (1134)
... ..+...+++++|+ |++++||+|+.||+|++||+. +++.+.++.+.
T Consensus 251 --~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~---------------~~~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 251 --SWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV---------------KGHCQYAFINSDEQPSMEH 310 (437)
T ss_dssp --EEB---CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT---------------TTEEEEEEESSSSCCCGGG
T ss_pred --EEe---cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC---------------CCcEEEEEEcCCCCCccce
Confidence 111 1234578899555 568899999999999999998 33333332210
Q ss_pred ------------c--CCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCC--CCceeeeEEcCCCCCCc
Q 001165 313 ------------S--MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS--LSSISSPIVKPNQDCKY 376 (1134)
Q Consensus 313 ------------~--~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~--~~~V~sv~~sp~~~~~~ 376 (1134)
. ..|.+.|++++|+ +|++|++|+.||.|++||+.++.+..++.+|. ...+....++++.
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 385 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANL---- 385 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTE----
T ss_pred ecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecce----
Confidence 0 1277889999999 88999999999999999999998888887752 2223333344332
Q ss_pred ceEEEcceeEEEeCCCceEEEEecCCCccEEEEec-----CCEEEeeecCCcEEeee
Q 001165 377 EPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTYARQ 428 (1134)
Q Consensus 377 ~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~-----~k~l~S~s~d~ti~~w~ 428 (1134)
..+... |+............|.+.|..+.+ ...++|++.||+|++|.
T Consensus 386 ~~~~~~-----~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 386 TMLLRK-----MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEE-----CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEEe-----cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 222211 333333334445568888855444 34889999999999994
No 90
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=4.6e-24 Score=239.94 Aligned_cols=247 Identities=15% Similarity=0.131 Sum_probs=177.4
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEee--e--C
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S--D 141 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s--~--d 141 (1134)
|.+.+.+++|+|||++||+++.||+|+||++........ ..+.++...|.++. + +
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~---------------------~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI---------------------DTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC---------------------EEECCCSSCEEEEEECCGGG
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE---------------------EEEccccCCeEEEEecCCCc
Confidence 456789999999999999999999999999864211100 01223344555543 3 3
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC--
Q 001165 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-- 219 (1134)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~-- 219 (1134)
++.+++++.||+|++|+.+....... ..+..|...|.+++|+|+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~----------------------------------~~~~~h~~~v~~v~~~p~~~ 112 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQI----------------------------------AVHAVHSASVNSVQWAPHEY 112 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCC----------------------------------EEECCCSSCEEEEEECCGGG
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEE----------------------------------EEeecCCCceeEEEeCcCCC
Confidence 67899999999999865432110000 013457788999999998
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-------------CCEEEEeeeCCeEEEEecc
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-------------QQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-------------g~llAsG~~dg~V~lwd~~ 286 (1134)
++.+++++.||++.+|++............ .+...+.+++|+|+ +++||+|+.||+|++||+.
T Consensus 113 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~----~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~ 188 (297)
T 2pm7_B 113 GPMLLVASSDGKVSVVEFKENGTTSPIIID----AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (297)
T ss_dssp CSEEEEEETTSEEEEEEBCSSSCBCCEEEE----CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE
T ss_pred CcEEEEEECCCcEEEEEecCCCceeeeeee----cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc
Confidence 889999999999999998654211111111 24567899999997 5799999999999999997
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC---CEEEEEECCCcEEEEecCCCe---eEEEe--ccC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN---SAFAVGWKSRGLTVWSVSGCR---LMSTI--RQI 358 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG---~~Lasg~~Dg~I~vWdv~~~~---l~~tl--~~h 358 (1134)
.... ..+...++.+ |.+.|.+++|+|++ ++||+|+.|++|+|||+.+.. ....+ .+|
T Consensus 189 ~~~~-----------~~~~~~~l~~----H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~ 253 (297)
T 2pm7_B 189 SDAQ-----------TYVLESTLEG----HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (297)
T ss_dssp TTTT-----------EEEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred CCCc-----------eEEEEEEecC----CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC
Confidence 2211 0114455666 99999999999995 899999999999999997632 12233 234
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
...|.+++|+|++ +.+++|+ ++++|+..
T Consensus 254 -~~~v~~~~~s~~g----~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 254 -PDVLWRASWSLSG----NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -SSCEEEEEECSSS----CCEEEEETTSCEEEEEEC
T ss_pred -CCcEEEEEECCCC----CEEEEEcCCCcEEEEEEC
Confidence 6689999999998 7777765 77788764
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-24 Score=247.15 Aligned_cols=254 Identities=15% Similarity=0.096 Sum_probs=199.6
Q ss_pred cCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC--CCEEEEeeeCCeEE
Q 001165 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE--QQILAVGTRRGVVE 281 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd--g~llAsG~~dg~V~ 281 (1134)
+.+|...|.+++|+|+++.+++++.||.+.+|++............ .+...+++++|+|+ +++|++|+.||+|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----GHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC----CCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec----CCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 4578999999999999999999999999999998643222111111 24578999999987 99999999999999
Q ss_pred EEeccccccceeeeeeeccCcce--EEEEeecccCCCCcCeEEEEECCC--CCEEEEEECCCcEEEEecCCCe--eEEEe
Q 001165 282 LYDLAESASLIRTVSLYDWGMRE--VYYTFCRYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTI 355 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~--~l~~l~~~~~~h~g~V~~l~fSPD--G~~Lasg~~Dg~I~vWdv~~~~--l~~tl 355 (1134)
+||+. +++ .+..+.+ |.+.|.+++|+|+ |++|++|+.||.|++||+.++. ....+
T Consensus 83 iwd~~---------------~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 83 IWKEE---------------NGRWSQIAVHAV----HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp EEEEE---------------TTEEEEEEEECC----CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred EEEcC---------------CCceeEeeeecC----CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe
Confidence 99998 444 4455554 9999999999999 9999999999999999997763 33445
Q ss_pred ccCCCCceeeeEEcC-------------CCCCCcceEEEcc---eeEEEeCCCc----eEEEEecCCCccE--EEEec--
Q 001165 356 RQISLSSISSPIVKP-------------NQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERV--LIFSF-- 411 (1134)
Q Consensus 356 ~~h~~~~V~sv~~sp-------------~~~~~~~~l~sgs---~i~~W~~~~~----~l~~~~~~h~~~v--~~~s~-- 411 (1134)
.+| ...|.+++|+| ++ ..+++|+ .+++|+..++ .+.....+|...| +++++
T Consensus 144 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 144 DAH-AIGVNSASWAPATIEEDGEHNGTKES----RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp ECC-TTCEEEEEECCCC----------CTT----CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred cCC-CCceEEEEEcCccccccccccCCCCC----CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC
Confidence 555 67899999999 45 6777776 8999998654 3556677888888 45555
Q ss_pred --CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 412 --GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 412 --~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
++.+++++.|+++++|++..+..... ........|..+|.+++|+|+|++||+++.||.+ +|
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWK---------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCE---------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccce---------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 36789999999999999876543100 0011233578899999999999999999999999 99
Q ss_pred Ecc-CCcEEEeCC
Q 001165 489 DIR-QKKWRVFGD 500 (1134)
Q Consensus 489 d~~-sg~Wk~F~~ 500 (1134)
++. .++|..++.
T Consensus 284 ~~~~~~~~~~~~~ 296 (379)
T 3jrp_A 284 KENLEGKWEPAGE 296 (379)
T ss_dssp EEEETTEEEEEEE
T ss_pred eCCCCCccccccc
Confidence 997 456766543
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.92 E-value=9.8e-24 Score=250.38 Aligned_cols=279 Identities=13% Similarity=0.179 Sum_probs=215.9
Q ss_pred cceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccE
Q 001165 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1134)
Q Consensus 132 ~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V 211 (1134)
...|.|+.++++.+++|+.||.|++|+.... ... ..+.+|...|
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~~~----------------------------------~~~~~h~~~v 176 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECK----------------------------------RILTGHTGSV 176 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEE----------------------------------EEECCCSSCE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCC--eEE----------------------------------EEEcCCCCcE
Confidence 3468899999999999999999998654321 111 0234678899
Q ss_pred EEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccc
Q 001165 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~ 291 (1134)
.+++| +++.+++++.||.+.+|+........ ... .+...+.+++|++ ..+++|+.||+|++||+......
T Consensus 177 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~----~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 177 LCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--TLI----HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp EEEEC--CSSEEEEEETTSCEEEEESSSCCEEE--EEC----CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC
T ss_pred EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE--EEc----CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc
Confidence 99988 78899999999999999986543211 111 2457789999975 48999999999999999832111
Q ss_pred eeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCC
Q 001165 292 IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 371 (1134)
Q Consensus 292 ~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~ 371 (1134)
.....+.+ |.+.|.+++| +|++|++|+.||+|++||+.++.++.++.+| ...|.++.++
T Consensus 247 ------------~~~~~~~~----~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~-- 305 (435)
T 1p22_A 247 ------------TLRRVLVG----HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR-- 305 (435)
T ss_dssp ------------EEEEEECC----CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--
T ss_pred ------------eeeeEecC----CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC--
Confidence 11133344 9999999999 8999999999999999999999999999887 6789999884
Q ss_pred CCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccc
Q 001165 372 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 447 (1134)
Q Consensus 372 ~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~ 447 (1134)
+ ..+++|+ ++++||..+++++....+|...|..+.+ ++.+++++.||++++||+..+....
T Consensus 306 ~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~----------- 370 (435)
T 1p22_A 306 D----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR----------- 370 (435)
T ss_dssp T----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT-----------
T ss_pred C----CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc-----------
Confidence 3 5677766 8999999999999999999999988888 8899999999999999986654210
Q ss_pred cccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 448 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 448 ~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
.-........+.+|..+|.+++| +|++|++||.||.+ +||+.++.
T Consensus 371 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 00000013456789999999999 88999999999999 99997763
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.4e-23 Score=244.31 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=203.5
Q ss_pred Eeec-CeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceec
Q 001165 27 FKVN-NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (1134)
Q Consensus 27 fS~d-g~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~ 105 (1134)
++++ +.+++++.+++|+||+...+. ....... .+.+.+.+++|+|||++||+++.||.|++|++........
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 171 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS-VSALAET-----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT- 171 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC-EEEEEEC-----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc-EeEeeec-----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-
Confidence 4444 346666778999999997443 2222221 1356789999999999999999999999999864321111
Q ss_pred CCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccccccccc
Q 001165 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (1134)
Q Consensus 106 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~ 185 (1134)
+.++...|.+++.+++.+++++.+|.+.+|+..... ...
T Consensus 172 ----------------------~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~------------------ 210 (401)
T 4aez_A 172 ----------------------MAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-HQI------------------ 210 (401)
T ss_dssp ----------------------ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEE------------------
T ss_pred ----------------------ecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-cee------------------
Confidence 112344677888888999999999999986654221 100
Q ss_pred CCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEEC
Q 001165 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIA 265 (1134)
Q Consensus 186 ~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~s 265 (1134)
..+.+|.+.|.+++|+|+++.+++++.||.+.+|+........ ... .+...+.+++|+
T Consensus 211 ----------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~----~~~~~v~~~~~~ 268 (401)
T 4aez_A 211 ----------------GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF--TKT----NHNAAVKAVAWC 268 (401)
T ss_dssp ----------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE--EEC----CCSSCCCEEEEC
T ss_pred ----------------eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE--Eec----CCcceEEEEEEC
Confidence 0234678899999999999999999999999999987533211 111 234678899999
Q ss_pred CCC-CEEEEee--eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE--ECCCc
Q 001165 266 PEQ-QILAVGT--RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG--WKSRG 340 (1134)
Q Consensus 266 pdg-~llAsG~--~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg--~~Dg~ 340 (1134)
|++ .++++|+ .||+|++||+. +++.+.++. |.+.|.+++|+|+|+.++++ +.||.
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~---------------~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAA---------------TGARVNTVD-----AGSQVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETT---------------TCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred CCCCCEEEEecCCCCCEEEEEECC---------------CCCEEEEEe-----CCCcEEEEEECCCCCeEEEEeecCCCc
Confidence 976 5677755 79999999998 666666653 56789999999999999995 48999
Q ss_pred EEEEecCCCeeEEE--eccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEE
Q 001165 341 LTVWSVSGCRLMST--IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI 398 (1134)
Q Consensus 341 I~vWdv~~~~l~~t--l~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~ 398 (1134)
|++|++.++..... +.+| ...|.+++|+|++ ..+++|+ .+++|+..+++.+..
T Consensus 329 i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDG----RILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEEETTEEEEEEEEECC-SSCCCEEEECTTS----SEEEEECTTSEEEEEECCC------
T ss_pred EEEEecCCccceeEEEecCC-CCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCccccc
Confidence 99999988665544 5566 6789999999998 8888876 899999988776543
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=4.7e-23 Score=243.42 Aligned_cols=239 Identities=17% Similarity=0.133 Sum_probs=187.8
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
.+|...|++|+|+|+++.+++++.||.+.+|++....... ... .+...+.|+++ ++.++++|+.|+++++|+
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~--~~~----~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--NMT----SHSARVGSLSW--NSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EEC----CCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE--EEe----CCCCceEEEee--CCCEEEEEeCCCceeEee
Confidence 4567889999999999999999999999999986543211 111 23456667665 567999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCe----eEEEeccCCC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISL 360 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~----l~~tl~~h~~ 360 (1134)
... ....+.++.+ |.+.+..+.|+|+|+++++++.||.+++|+...+. .+.....| .
T Consensus 216 ~~~--------------~~~~~~~~~~----h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~ 276 (420)
T 4gga_A 216 VRV--------------AEHHVATLSG----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-Q 276 (420)
T ss_dssp TTS--------------SSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-S
T ss_pred ecc--------------cceeeEEecc----cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc-C
Confidence 872 2334455555 99999999999999999999999999999997654 23455555 6
Q ss_pred CceeeeEEcCCCCCCcceEEE--cc---eeEEEeCCCceEEEEecCCCccE-EEEec-CCEEEee--ecCCcEEeeeeee
Q 001165 361 SSISSPIVKPNQDCKYEPLMS--GT---SMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLNR--GVSGMTYARQVIY 431 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~s--gs---~i~~W~~~~~~l~~~~~~h~~~v-~~~s~-~k~l~S~--s~d~ti~~w~l~~ 431 (1134)
..|.+++|+|.+. ..+++ |+ ++++||..++++......|.... ..+++ ++.++++ +.|+++++|++.+
T Consensus 277 ~~V~~~~~~p~~~---~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 277 GAVKAVAWCPWQS---NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp SCEEEEEECTTCT---TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred CceeeeeeCCCcc---cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 7899999999872 34443 33 89999999999988877655433 55666 7766654 4799999999765
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
+.. ..++.+|..+|++++|||||++||+||.||+| +||+...
T Consensus 354 ~~~--------------------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 354 MAK--------------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CCE--------------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CcE--------------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 543 45678999999999999999999999999999 9998643
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=9.9e-24 Score=247.36 Aligned_cols=239 Identities=11% Similarity=0.053 Sum_probs=164.6
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC--------CCCEEEEeeeCCeE
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP--------EQQILAVGTRRGVV 280 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp--------dg~llAsG~~dg~V 280 (1134)
..+....++++++.+++++.|+++++|+.............. ...|.+.|.+++|+| |+++||+|+.|++|
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 333445667778899999999999999987543321111111 112567899999998 89999999999999
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCeeEEEec---
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIR--- 356 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~l~~tl~--- 356 (1134)
+|||+. ++..+..+.+ |.++|.+++|+|+|. +|++|+.||+|++||+.+++...+..
T Consensus 169 ~~Wd~~---------------~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~ 229 (393)
T 4gq1_A 169 IIWRLT---------------DEGPILAGYP----LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE 229 (393)
T ss_dssp EEEEEE---------------TTEEEEEEEE----CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------
T ss_pred EEEECC---------------CCceeeeecC----CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC
Confidence 999998 5555555555 899999999999885 89999999999999998765433221
Q ss_pred ---------------------cCCCCceeeeEEc-CCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE-----
Q 001165 357 ---------------------QISLSSISSPIVK-PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV----- 406 (1134)
Q Consensus 357 ---------------------~h~~~~V~sv~~s-p~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v----- 406 (1134)
..+...|.++.|+ |++ ..+++++ ++++||+..++......+|...+
T Consensus 230 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 230 LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL 305 (393)
T ss_dssp -CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT----CEEEEECTTSEEEEEEC-------------------CC
T ss_pred CcccceEEecccccceeeeecccccccceeeeeecCCC----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence 1124567788876 676 7788776 89999998776655444433222
Q ss_pred ---------------EEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEE
Q 001165 407 ---------------LIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 468 (1134)
Q Consensus 407 ---------------~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~v 468 (1134)
..+.+ +..+++++.|+++++||+..+.. .....+|..+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--------------------~~~~~~~~~~V~sv 365 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--------------------NSIPIQLGMPIVDF 365 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--------------------CEEEEECSSCEEEE
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--------------------EEEecCCCCcEEEE
Confidence 12222 33567889999999999876554 34566788899999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEcc
Q 001165 469 AASKDGMFLAVAGLHGLILYDIR 491 (1134)
Q Consensus 469 a~SpdG~~LAsgg~dG~ilwd~~ 491 (1134)
+|||||++||+|+.+|.++|.+.
T Consensus 366 afspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 366 CWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EECTTSSEEEEEESSEEEEEEEG
T ss_pred EEcCCCCEEEEEeCCCeEEEEEe
Confidence 99999999999999998888654
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=249.40 Aligned_cols=265 Identities=11% Similarity=0.130 Sum_probs=187.6
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc----cc-eecccccCCC------------CCeEEEEECCC
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL----AE-FIKIDKELGS------------GDAVCASIAPE 267 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~----~~-~~~~~~~~~~------------~~~~~va~spd 267 (1134)
..+...|.+++|+|+++.+++++.||.+.+|+........ .. ........+. ..+++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3567899999999999999999999999999987543100 00 0000000133 66899999999
Q ss_pred C--CEEEEeeeCCeEEEEeccccccceeeeeeec---------------cC---------cceEEEEeecccCCCCcCeE
Q 001165 268 Q--QILAVGTRRGVVELYDLAESASLIRTVSLYD---------------WG---------MREVYYTFCRYSMDDTGPVS 321 (1134)
Q Consensus 268 g--~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~---------------~~---------~~~~l~~l~~~~~~h~g~V~ 321 (1134)
+ ..+++|+.||+|++|++...........+.. .+ .....+. +..+|.+.|+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~ 181 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI---FANAHTYHIN 181 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE---ECSCCSSCCC
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE---eccCCCcceE
Confidence 8 8999999999999999974211000000000 00 0011122 1234999999
Q ss_pred EEEECCCCCEEEEEECCCcEEEEecC-CCeeEEE-------eccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeC
Q 001165 322 CIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMST-------IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 390 (1134)
Q Consensus 322 ~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~l~~t-------l~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~ 390 (1134)
+++|+|||++|++| .||+|++||+. ++..+.. +.+| ...|.+++|+|++. ..+++|+ ++++||.
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSC---NTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCT---TEEEEEETTSCEEEEET
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCC---cEEEEEeCCCeEEEEEC
Confidence 99999999999999 79999999998 4555553 3455 67899999999862 4677776 8999999
Q ss_pred CCceE----EEEecCCCc------------cE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccc
Q 001165 391 YGYRL----YAIEEGSSE------------RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 451 (1134)
Q Consensus 391 ~~~~l----~~~~~~h~~------------~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~ 451 (1134)
.++++ .....+|.. .| ++|++ ++.+++++. +++++||+......
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~---------------- 319 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP---------------- 319 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC----------------
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc----------------
Confidence 98886 666777765 67 55666 889999988 99999998652321
Q ss_pred cccceeeccCCCc---------------eEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEE
Q 001165 452 LNLPVSYISQNWP---------------VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 497 (1134)
Q Consensus 452 ~~~~~~~~~h~~~---------------V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~ 497 (1134)
...+.+|... +..++|||+|++||+|+.||.+ +||+.+++...
T Consensus 320 ---~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 320 ---VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp ---SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred ---cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 2333444321 3359999999999999999999 99999887543
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=4e-23 Score=234.95 Aligned_cols=286 Identities=14% Similarity=0.080 Sum_probs=195.3
Q ss_pred CCcee--EEEeecCeEEEEEc-CCeEEEeecCCcce--eEEEeecChhhHHhhcceeEEEEcCCce-EEEEEeCCCEEEE
Q 001165 20 SSQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHI 93 (1134)
Q Consensus 20 ~~~~i--v~fS~dg~llAs~s-~~~l~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wSPDg~-~Lav~t~dg~l~l 93 (1134)
|...| ++|+|||++||+++ +++|+||+.+.... ...... .+.+.+.+++|+|||+ +|++++.||.|++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL------RYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE------ECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee------ecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 44444 88999999988876 67999999974431 111111 2456789999999999 9999999999999
Q ss_pred EEE-EecCcceecCCCCCCCcceeeEEEeeceeeccccccceEE--EeeeCCCeEEEEecCCcEEEEecCCccccceecc
Q 001165 94 FKV-QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (1134)
Q Consensus 94 w~l-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~--~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~ 170 (1134)
|++ ..... ...... .+...|. ++.+ ++.+++++.||.+.+|+............
T Consensus 84 wd~~~~~~~-~~~~~~---------------------~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNN---------------------EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp ECSSSSSSE-EECBSC---------------------CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred EEeccCCce-Eecccc---------------------CCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence 998 65421 111110 0222343 3445 78899999999998765432100000000
Q ss_pred ccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEecc-CCccccceec
Q 001165 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIK 249 (1134)
Q Consensus 171 ~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~-~~~~~~~~~~ 249 (1134)
.. .+ ....+...|.+++|+|++ +++++.||.+.+|+... .........
T Consensus 141 ~~-----~~-----------------------~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~- 189 (342)
T 1yfq_A 141 NL-----NS-----------------------NNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE- 189 (342)
T ss_dssp ES-----CS-----------------------SSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-
T ss_pred CC-----ee-----------------------eEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee-
Confidence 00 00 012267789999999988 89999999999999875 322111111
Q ss_pred ccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc-----cCCCCcCeEEE
Q 001165 250 IDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY-----SMDDTGPVSCI 323 (1134)
Q Consensus 250 ~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~-----~~~h~g~V~~l 323 (1134)
..+...+.+++|+| +++++++|+.||.|++|+++...... ..+...++.+. ..+|.++|+++
T Consensus 190 ---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 190 ---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY---------NSSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp ---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST---------TCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred ---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc---------ccccceeeecccccccccccceeEEEE
Confidence 12346789999999 99999999999999999998431000 01222333330 01245699999
Q ss_pred EECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 324 AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 324 ~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
+|+|||++|++|+.||.|++||+.+++++.++.+||...|.+++ |++ ..+++|+
T Consensus 258 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~----~~l~s~s 311 (342)
T 1yfq_A 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD----NILCLAT 311 (342)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS----SEEEEEE
T ss_pred EEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC----CeEEEEe
Confidence 99999999999999999999999999999999887567788877 776 5666554
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=7e-23 Score=232.93 Aligned_cols=280 Identities=10% Similarity=0.045 Sum_probs=210.5
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCC
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~ 143 (1134)
+.+.+.+++|+|||++|++++.||.|++|++......... .. ...+...| .+++++++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~------------~~--------~~~~~~~v~~~~~~~~~~ 69 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL------------LQ--------SLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE------------EE--------EEECSSCEEEEEEEESSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc------------ee--------eeecCCceEEEEECCCCC
Confidence 4567899999999999999999999999999764311100 00 00111223 45677888
Q ss_pred -eEEEEecCCcEEEEec-CCccccceeccccCCCccccccccccCCCccccccCCCcccccccCC--CcccEEEEEEcCC
Q 001165 144 -HMLLGLSDGSLYSISW-KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLP 219 (1134)
Q Consensus 144 -~llv~t~dg~v~~~~w-d~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~--~~~~V~~i~fsp~ 219 (1134)
.+++++.+|.|.+|+. +... .. .+.+ |...|.+++|+|
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~~--~~-----------------------------------~~~~~~~~~~v~~l~~~~- 111 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSPS--FQ-----------------------------------ALTNNEANLGICRICKYG- 111 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSS--EE-----------------------------------ECBSCCCCSCEEEEEEET-
T ss_pred cEEEEEcCCCeEEEEEeccCCc--eE-----------------------------------eccccCCCCceEEEEeCC-
Confidence 8999999999998655 4321 11 1234 788999999999
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccc----cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc-cccceee
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKL----AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE-SASLIRT 294 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~-~~~~~~~ 294 (1134)
++.+++++.||.+.+|+........ ..... ...+...+++++|+|++ +++|+.||+|++||+.. ....
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~--- 184 (342)
T 1yfq_A 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--NTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN--- 184 (342)
T ss_dssp TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--SSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC---
T ss_pred CCEEEEEcCCCeEEEEcccccccccccccCCeee--EEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc---
Confidence 9999999999999999986411000 00011 11244789999999998 99999999999999983 2111
Q ss_pred eeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCC------eeEEEeccCC--------
Q 001165 295 VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQIS-------- 359 (1134)
Q Consensus 295 l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~------~l~~tl~~h~-------- 359 (1134)
...... .|...|.+++|+| ||+++++|+.||.|++|++... ....++..|.
T Consensus 185 ----------~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T 1yfq_A 185 ----------GTIEES----GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp ----------CEEEEC----SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred ----------ceeeec----CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence 111111 3888999999999 9999999999999999999776 6777777762
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC-CccEEEEec-CCEEEeeecCCc-EEeee
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCCLNRGVSGM-TYARQ 428 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h-~~~v~~~s~-~k~l~S~s~d~t-i~~w~ 428 (1134)
...|.+++|+|++ ..+++|+ .+++|+..+++++....+| ...|..+.+ ++.+++++.|++ .+.+.
T Consensus 251 ~~~i~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 251 AYPVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCCEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred ceeEEEEEEcCCC----CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 2389999999998 7888876 8999999999999999888 888865557 889999999998 55544
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=5.3e-23 Score=241.14 Aligned_cols=249 Identities=11% Similarity=0.113 Sum_probs=193.1
Q ss_pred cCCCcccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCcccc--ceecccccCCCCCeEEEEECCCC-CEEEEeeeCCe
Q 001165 204 KFPISSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLA--EFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGV 279 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~ 279 (1134)
+.+|...|.+++|+| +++.+++++.||.+.+|++........ ..... ...+...+++++|+|++ .++++|+.||+
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 457889999999999 899999999999999999876432100 00000 01245789999999998 69999999999
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEe--ecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe-c
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTF--CRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-R 356 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l--~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl-~ 356 (1134)
|++||+. +++.+.++ .+ |.+.|++++|+|||++|++|+.||.|++||+.++..+.++ .
T Consensus 156 i~iwd~~---------------~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 216 (402)
T 2aq5_A 156 ILVWDVG---------------TGAAVLTLGPDV----HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216 (402)
T ss_dssp EEEEETT---------------TTEEEEEECTTT----CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECC---------------CCCccEEEecCC----CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc
Confidence 9999999 77777776 45 9999999999999999999999999999999999988888 5
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEc---c---eeEEEeCCCceE-EE-EecCCCccE--EEEec-CCEEE-eeecCCcE
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSG---T---SMMQWDEYGYRL-YA-IEEGSSERV--LIFSF-GKCCL-NRGVSGMT 424 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sg---s---~i~~W~~~~~~l-~~-~~~~h~~~v--~~~s~-~k~l~-S~s~d~ti 424 (1134)
+|....+..+.|+|++ ..+++| + .+++||..+++. .. ...+|...+ ..+++ ++.++ +++.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 217 PHEGTRPVHAVFVSEG----KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp SSCSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred CCCCCcceEEEEcCCC----cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 6644458999999998 888887 3 899999987543 22 222445555 56677 77775 56689999
Q ss_pred EeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcE
Q 001165 425 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 425 ~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~W 495 (1134)
++|++..+...+.. ...+ .|..+|++++|+|+|.++++ .++.+ +|++.++..
T Consensus 293 ~i~d~~~~~~~~~~----------------l~~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 293 RYFEITSEAPFLHY----------------LSMF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEECSSTTCEEE----------------EEEE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEEecCCCcceEe----------------eccc-ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99998766531111 1122 25688999999999999864 56688 999987653
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=8.3e-24 Score=240.16 Aligned_cols=239 Identities=13% Similarity=0.099 Sum_probs=179.6
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcce--EEEEeecccCCCCcCeEEEEECC--CCC
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMRE--VYYTFCRYSMDDTGPVSCIAWTP--DNS 330 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~--~l~~l~~~~~~h~g~V~~l~fSP--DG~ 330 (1134)
|...+++++|+|+|++||+|+.|++|+|||+. +++ .+.++.+ |.++|++++|+| +|+
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~---------------~~~~~~~~~l~g----H~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR---------------NGGQILIADLRG----HEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEE---------------TTEEEEEEEEEC----CSSCEEEEEECCGGGSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec---------------CCCcEEEEEEcC----CCccEEEEEeCCCCCCC
Confidence 44789999999999999999999999999997 332 4566676 999999999987 499
Q ss_pred EEEEEECCCcEEEEecCCC--eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceE---EEEecCC
Q 001165 331 AFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL---YAIEEGS 402 (1134)
Q Consensus 331 ~Lasg~~Dg~I~vWdv~~~--~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l---~~~~~~h 402 (1134)
+||||+.|++|++||+.++ ....++.+| ...|++++|+|++. ...+++|+ ++++|+..+... .....+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~--g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDY--GLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTT--CSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCC-CCceEEEEECCCCC--CcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999876 355667777 77899999999831 16788877 899999987532 2344567
Q ss_pred CccE--EEEec------------------CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCC
Q 001165 403 SERV--LIFSF------------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 462 (1134)
Q Consensus 403 ~~~v--~~~s~------------------~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~ 462 (1134)
...+ +.+++ ++.+++++.|+++++|++..+... +....+.+|.
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-----------------~~~~~l~~h~ 212 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-----------------KEEQKLEAHS 212 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------EEEECCBCCS
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------ceeeecccCC
Confidence 7666 45554 257899999999999997533210 0134567899
Q ss_pred CceEEEEEcCCC----CEEEEEeCCCeE-EEEccC---CcEEEeCCccceeeeEEEEEEeeC--CEEEEEEEecCCCeeE
Q 001165 463 WPVQHVAASKDG----MFLAVAGLHGLI-LYDIRQ---KKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYE 532 (1134)
Q Consensus 463 ~~V~~va~SpdG----~~LAsgg~dG~i-lwd~~s---g~Wk~F~~~~~e~~~~v~gl~W~~--~~lv~~~~~~~~~~~e 532 (1134)
.+|++++|+|++ ++||+|+.||.+ +|++.+ +.|.. ...+...-.|..+.|.+ +.+++| +.+..
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g~~las~-----~~D~~ 285 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP--KLLHKFNDVVWHVSWSITANILAVS-----GGDNK 285 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBC--CEEEECSSCEEEEEECTTTCCEEEE-----ESSSC
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhh--hhhhcCCCcEEEEEEcCCCCEEEEE-----cCCCe
Confidence 999999999997 899999999999 999976 22321 00011112466788874 456666 24467
Q ss_pred EEEEeCC
Q 001165 533 LLFYPRY 539 (1134)
Q Consensus 533 Lrly~~~ 539 (1134)
+++|+..
T Consensus 286 v~lw~~~ 292 (316)
T 3bg1_A 286 VTLWKES 292 (316)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999763
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=2.4e-22 Score=225.82 Aligned_cols=239 Identities=16% Similarity=0.126 Sum_probs=181.2
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
.+|...|.+++|+|+++.+++++.||++.+|+........ ... .+...+ .++++++.++++|+.++.+++|+
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~--~~~----~h~~~~--~~~~~~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--NMT----SHSARV--GSLSWNSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEE----CCSSCE--EEEEEETTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE--Eec----CccceE--EEeecCCCEEEEEecCCceEeee
Confidence 4577889999999999999999999999999986543211 111 122334 44566778999999999999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee----EEEeccCCC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISL 360 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l----~~tl~~h~~ 360 (1134)
... ....+.++.+ |.+.+.+++|+++|++|++++.||+|++||+.+++. ......+ .
T Consensus 136 ~~~--------------~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~ 196 (318)
T 4ggc_A 136 VRV--------------AEHHVATLSG----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-Q 196 (318)
T ss_dssp TTS--------------SSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-C
T ss_pred cCC--------------CceeEEEEcC----ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-C
Confidence 872 2234445555 999999999999999999999999999999976542 2333333 5
Q ss_pred CceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEe--eecCCcEEeeeeeeC
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN--RGVSGMTYARQVIYG 432 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S--~s~d~ti~~w~l~~~ 432 (1134)
..|.+++++|++.. .-.+++|+ ++++|+....+....... ...+ ..+.+ ++.+++ ++.|+++++||+.++
T Consensus 197 ~~v~~~~~~~~~~~-~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 197 GAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp SCEEEEEECTTSTT-EEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred CceEEEEecCCCCc-EEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 68999999988621 11223444 899999988877666543 3444 55666 665554 457999999997655
Q ss_pred CCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 433 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 433 ~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
+. ..++.+|..+|++++|||||++||+||.||++ +||+..
T Consensus 275 ~~--------------------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 AK--------------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CE--------------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred cE--------------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 43 45678999999999999999999999999999 999854
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=7.1e-23 Score=242.98 Aligned_cols=266 Identities=9% Similarity=0.116 Sum_probs=208.4
Q ss_pred EEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCc
Q 001165 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (1134)
Q Consensus 74 ~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~ 153 (1134)
++++||++|++++.||+|++||+........ +.++...|.++..+++.+++|+.||.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~-----------------------~~~h~~~v~~l~~~~~~l~sg~~dg~ 194 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRI-----------------------LTGHTGSVLCLQYDERVIITGSSDST 194 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEE-----------------------ECCCSSCEEEEECCSSEEEEEETTSC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------EcCCCCcEEEEEECCCEEEEEcCCCe
Confidence 4556999999999999999999864321111 22344568888889999999999999
Q ss_pred EEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEE
Q 001165 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (1134)
Q Consensus 154 v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~ 233 (1134)
|.+|+.+.. .... .+.+|...|.++.|++ +.+++++.||.+.
T Consensus 195 i~vwd~~~~--~~~~----------------------------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~ 236 (435)
T 1p22_A 195 VRVWDVNTG--EMLN----------------------------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIA 236 (435)
T ss_dssp EEEEESSSC--CEEE----------------------------------EECCCCSCEEEEECCT--TEEEEEETTSCEE
T ss_pred EEEEECCCC--cEEE----------------------------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEE
Confidence 998765432 1110 2345778899999974 5899999999999
Q ss_pred EEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeeccc
Q 001165 234 SCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYS 313 (1134)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~ 313 (1134)
+|+............. ..+...+++++| +++++++|+.||+|++||+. +++.+.++.+
T Consensus 237 vwd~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~---------------~~~~~~~~~~-- 294 (435)
T 1p22_A 237 VWDMASPTDITLRRVL---VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS---------------TCEFVRTLNG-- 294 (435)
T ss_dssp EEECSSSSCCEEEEEE---CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT---------------TCCEEEEEEC--
T ss_pred EEeCCCCCCceeeeEe---cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC---------------cCcEEEEEcC--
Confidence 9998754432111111 124467888888 78899999999999999999 7788888877
Q ss_pred CCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeC
Q 001165 314 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 390 (1134)
Q Consensus 314 ~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~ 390 (1134)
|.+.|.+++| +|+++++|+.||+|++||+.++.++.++.+| ...|.++++ ++ ..+++|+ ++++||.
T Consensus 295 --~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~--~~----~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 295 --HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCIRF--DN----KRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp --CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEC--CS----SEEEEEETTSCEEEEEH
T ss_pred --CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-cCcEEEEEe--cC----CEEEEEeCCCcEEEEEC
Confidence 9999999999 5789999999999999999999999999887 678999998 44 6778776 8999998
Q ss_pred CCce---------EEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCC
Q 001165 391 YGYR---------LYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 391 ~~~~---------l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
.+++ ++....+|.+.|..+.+ ++.+++++.|+++++|++....
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 364 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp HHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred CCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 7665 78888899999977777 8889999999999999986544
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-23 Score=251.18 Aligned_cols=249 Identities=12% Similarity=0.061 Sum_probs=186.2
Q ss_pred EEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEE
Q 001165 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1134)
Q Consensus 136 ~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~ 215 (1134)
.++++||+.+++++.|++|. +++... .+.+|...|.+++
T Consensus 21 v~~SpDG~~iASas~D~TV~----d~~~~~-------------------------------------~l~gh~~~v~~V~ 59 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG----QPKYAK-------------------------------------DINCNSKNLFHVK 59 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE----EECCCS-------------------------------------CCSSBGGGTEEEE
T ss_pred EEECCCCCEEEEEcCCceee----cccccc-------------------------------------eecCCCccEEEEE
Confidence 57888999999999999987 333221 1246889999999
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
|+|+| .++.+.+|+..+..... ..+...|++++|||+|++||+++.||+|++|+.+
T Consensus 60 FsPdg-------~~~~~~~~~~~~~~~~~--------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~--------- 115 (588)
T 2j04_A 60 EFPLE-------FENKLDFELAQQNGLLN--------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN--------- 115 (588)
T ss_dssp EECCC-------CCCTTTTSCCCSSCSST--------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT---------
T ss_pred ECCCC-------CcceEEEEeCCCceEee--------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC---------
Confidence 99998 45655554432211110 1124679999999999999999999999999965
Q ss_pred eeeccCcceEEEEeecccCCCC-----cCeEEEEECCCCCEEEEEECCCcEEEEecCCCe-------eEEEe----ccCC
Q 001165 296 SLYDWGMREVYYTFCRYSMDDT-----GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-------LMSTI----RQIS 359 (1134)
Q Consensus 296 ~l~~~~~~~~l~~l~~~~~~h~-----g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~-------l~~tl----~~h~ 359 (1134)
+ ++.++ . |. ..|.+++|||||++||+|+.||+|+|||+.++. .+.++ .+|
T Consensus 116 ------~--~l~~l---~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh- 181 (588)
T 2j04_A 116 ------K--MLTNL---D--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS- 181 (588)
T ss_dssp ------E--EEEEC---C--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-
T ss_pred ------c--eeeec---c--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc-
Confidence 1 22221 1 33 369999999999999999999999999998875 36777 444
Q ss_pred CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceE---EEEe-cCCCccEEEEec-CCEEEeeecCCcEEeeeeee
Q 001165 360 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL---YAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l---~~~~-~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~ 431 (1134)
.+.|.+++|+|++ +++++ ++++|+..++++ .... .+|...|..+.| ++.+++++ ++++++|++..
T Consensus 182 ~~~V~sVawSPdg------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~ 254 (588)
T 2j04_A 182 KDWVTHIVWYEDV------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKN 254 (588)
T ss_dssp CCCEEEEEEETTE------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTT
T ss_pred cccEEEEEEcCCc------EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCC
Confidence 6799999999985 44433 999999988773 3444 477777844333 88898887 69999999654
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEE--cCCCCEEEEEeCCCeEEEEc
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGLHGLILYDI 490 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~--SpdG~~LAsgg~dG~ilwd~ 490 (1134)
+... ....+|...|..++| ||||+.|++|+.+|.-+|..
T Consensus 255 ~~~~--------------------~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~ 295 (588)
T 2j04_A 255 YSIS--------------------SLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLE 295 (588)
T ss_dssp TEEE--------------------EEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEES
T ss_pred CeEE--------------------EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEee
Confidence 3321 122289999999999 99999999999999855664
No 104
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=7.4e-23 Score=230.16 Aligned_cols=183 Identities=11% Similarity=0.074 Sum_probs=143.3
Q ss_pred CCCCEEEEee--eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC---CCCEEEEEECCCc
Q 001165 266 PEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP---DNSAFAVGWKSRG 340 (1134)
Q Consensus 266 pdg~llAsG~--~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~~Lasg~~Dg~ 340 (1134)
++++++.+++ .|++|++|++.. .|+.+.++.+ |...|+.++|+| ||.+||||+.|++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~--------------dG~~~~s~~~----~~~~v~~l~fs~~~g~~~~LaSgS~D~T 204 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAE--------------DGGGKENQFL----MPPEETILTFAEVQGMQEALLGTTIMNN 204 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECT--------------TSCEEEEEEE----CCCSSCEEEEEEEETSTTEEEEEETTSE
T ss_pred CCCcEEEecccCCCCcEEEEEECC--------------CCceeeeecc----CCCceeeEEeeccCCCCceEEEecCCCc
Confidence 3555555533 478888888752 4666667666 999999999999 7899999999999
Q ss_pred EEEEecCCCeeEEEeccCC--CCceeeeEEcCCCCCCcceE------------EEcc---eeEEEeCCCceEEEEe----
Q 001165 341 LTVWSVSGCRLMSTIRQIS--LSSISSPIVKPNQDCKYEPL------------MSGT---SMMQWDEYGYRLYAIE---- 399 (1134)
Q Consensus 341 I~vWdv~~~~l~~tl~~h~--~~~V~sv~~sp~~~~~~~~l------------~sgs---~i~~W~~~~~~l~~~~---- 399 (1134)
|+|||+.++++++++.+|+ ...+.+++|+|++ ..+ ++|+ ++++|++.+++++.+.
T Consensus 205 IkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG----~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 205 IVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG----LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp EEEEETTTCCEEEEEECCC---CCCEEEEEEETT----EEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC----CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 9999999999999998753 2467778999998 544 5565 8999999999987664
Q ss_pred -cCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCce-EEEEEcCCCCE
Q 001165 400 -EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMF 476 (1134)
Q Consensus 400 -~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V-~~va~SpdG~~ 476 (1134)
.+|...++..++ +..+++++.|+++++||+.+++. ..++.+|...+ .+++|||||++
T Consensus 281 p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~--------------------l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 281 PPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQC--------------------TALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp CTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSE--------------------EEEECCC--CCCCEEEECSSSSE
T ss_pred cCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcE--------------------EEEecCCCCCeEEEEEECCCCCE
Confidence 477766665555 77899999999999999877654 45677787654 46899999999
Q ss_pred EEEEeCCCeE-EEEc
Q 001165 477 LAVAGLHGLI-LYDI 490 (1134)
Q Consensus 477 LAsgg~dG~i-lwd~ 490 (1134)
||+|+.||+| +||+
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 9999999999 9985
No 105
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.91 E-value=9.9e-23 Score=236.95 Aligned_cols=331 Identities=10% Similarity=0.078 Sum_probs=198.3
Q ss_pred CCcee--EEEee-cCeEEEEEc-CCeEEEeecCCcceeEEEeec-------ChhhHHhhcceeEEEEcC-CceEEEEEeC
Q 001165 20 SSQQI--IYFKV-NNGLLLIAS-PCHIELWSSSQHKVRLGKYKR-------DSESVQREGENLQAVWSP-DTKLIAVVTS 87 (1134)
Q Consensus 20 ~~~~i--v~fS~-dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r-------~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~ 87 (1134)
|..+| ++|+| +|++||+++ |++|+||+....... ..... ......+.+.+.+++|+| ++++|++++.
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQ-SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSS-SCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCccc-ceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 34444 89999 999999987 678999999743211 11100 000001456789999999 8889999999
Q ss_pred CCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeee---CCCeEEEEecCCcEEEEecCCccc
Q 001165 88 SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS---DNKHMLLGLSDGSLYSISWKGEFY 164 (1134)
Q Consensus 88 dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~---d~~~llv~t~dg~v~~~~wd~~~~ 164 (1134)
||.|++|++.......... +. . .....++.+ ++..+++++.+|.+.+|+....
T Consensus 121 d~~i~iwd~~~~~~~~~~~-~~--------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-- 176 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFN-FE--------------E-------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-- 176 (408)
T ss_dssp TSEEEEEETTTTEEEEEEE-CS--------------S-------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--
T ss_pred CCeEEEeeCCCCccceecc-CC--------------C-------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--
Confidence 9999999986532111110 00 0 011122333 4458999999999998765432
Q ss_pred cceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCcc
Q 001165 165 GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLK 243 (1134)
Q Consensus 165 ~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~ 243 (1134)
... ..+..|...|.+++|+|+++ .+++++.||.+.+|++......
T Consensus 177 ~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 177 SCS----------------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp CCC----------------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred cee----------------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 111 02345778899999999998 5899999999999998643311
Q ss_pred c--c--------ceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeeccc
Q 001165 244 L--A--------EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYS 313 (1134)
Q Consensus 244 ~--~--------~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~ 313 (1134)
. . .........+...+++++|+|++++|++|+.||.|++||+.+.. ....+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~ 287 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE---------------NTLVNYGKV 287 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------BCCCCCCCC
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---------------cceeccccc
Confidence 0 0 00000001245679999999999999999999999999998432 111110000
Q ss_pred -CCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEe
Q 001165 314 -MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 389 (1134)
Q Consensus 314 -~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~ 389 (1134)
......+........+..+++++.|+.|++||+.++.++.++.+| ...|++++|+|++ ..+++|+ .+++|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQSNF----QELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEETTT----TEEEEEETTSCEEEEE
T ss_pred cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcCCC----CEEEEECCCCeEEEEe
Confidence 001222223333345566777778899999999999999999887 7789999999998 8888877 899999
Q ss_pred CCCceEEEEecCCCccEEEEec--CCEEEeeecCCcEEeeeee
Q 001165 390 EYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 390 ~~~~~l~~~~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~ 430 (1134)
+++++.+.....+.. ...+.+ .....+.+.++.+++|+..
T Consensus 363 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 363 PSLYEPVPDDDETTT-KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ECC----------------------------------------
T ss_pred CCCCCccCCCCceEe-ccccccccceeecccCccCceeecCCc
Confidence 999887655433221 122333 3344567788999999753
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=6.8e-23 Score=240.19 Aligned_cols=282 Identities=13% Similarity=0.137 Sum_probs=205.7
Q ss_pred EEEEcCCCCeEEE-EEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEecccccc
Q 001165 213 WLELCLPMRLLFV-LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESAS 290 (1134)
Q Consensus 213 ~i~fsp~~~~la~-~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd~~~~~~ 290 (1134)
.++++|+...+++ ++.||.+.+|+........ ..... ...+...+++++|+| ++++||+|+.||+|++|++.+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-~~~~~-~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-KNVPL-VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-TTCCC-BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-CCCce-EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4678888755444 6789999999985432110 00000 012457899999999 999999999999999999983211
Q ss_pred ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCC-CEEEEEECCCcEEEEecCCCeeEEEe--ccCCCCceeeeE
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLSSISSPI 367 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG-~~Lasg~~Dg~I~vWdv~~~~l~~tl--~~h~~~~V~sv~ 367 (1134)
... ..+.+.++.+ |.+.|++++|+|+| ++|++|+.||+|++||+.+++...++ .+| ...|.+++
T Consensus 117 ~~~--------~~~~~~~~~~----h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~ 183 (402)
T 2aq5_A 117 VLP--------LREPVITLEG----HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH-PDTIYSVD 183 (402)
T ss_dssp SSC--------BCSCSEEEEC----CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC-CSCEEEEE
T ss_pred ccc--------cCCceEEecC----CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC-CCceEEEE
Confidence 000 0134555666 99999999999998 69999999999999999999999998 556 77899999
Q ss_pred EcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe-cCCCcc-E--EEEec-CCEEEee---ecCCcEEeeeeeeCCCeE
Q 001165 368 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSER-V--LIFSF-GKCCLNR---GVSGMTYARQVIYGEDRL 436 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~-~~h~~~-v--~~~s~-~k~l~S~---s~d~ti~~w~l~~~~~~l 436 (1134)
|+|++ ..+++|+ .+++||+++++..... .+|.+. + +.+++ ++.++++ +.|+.+++||+..+...+
T Consensus 184 ~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~ 259 (402)
T 2aq5_A 184 WSRDG----ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL 259 (402)
T ss_dssp ECTTS----SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS
T ss_pred ECCCC----CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc
Confidence 99998 7888876 8999999999988887 677654 3 66777 7788888 789999999986654311
Q ss_pred EEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe-CCCeE-EEEccCCc--EEEeCCccceeeeEEEEE
Q 001165 437 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGL 512 (1134)
Q Consensus 437 ~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg-~dG~i-lwd~~sg~--Wk~F~~~~~e~~~~v~gl 512 (1134)
......|...|.+++|+|||++|+++| .||.+ +||+.+++ ...+....+ .-.+.++
T Consensus 260 ------------------~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~--~~~v~~~ 319 (402)
T 2aq5_A 260 ------------------SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS--KESQRGM 319 (402)
T ss_dssp ------------------EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC--SSCCSEE
T ss_pred ------------------eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc--CCcccce
Confidence 112235667899999999999998655 69999 99998876 333322211 1235677
Q ss_pred EeeCCEEEEEEEecCCCeeEEEEEeC
Q 001165 513 LWLGKIIVVCNYIDSSNTYELLFYPR 538 (1134)
Q Consensus 513 ~W~~~~lv~~~~~~~~~~~eLrly~~ 538 (1134)
.|.++..+++ .....+++|..
T Consensus 320 ~~sp~~~~~~-----s~~~~~~~~~l 340 (402)
T 2aq5_A 320 GYMPKRGLEV-----NKCEIARFYKL 340 (402)
T ss_dssp EECCGGGSCG-----GGTEEEEEEEE
T ss_pred EEecccccce-----ecceeEEEEEc
Confidence 7776543322 12346777755
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=3.1e-22 Score=226.18 Aligned_cols=299 Identities=12% Similarity=0.071 Sum_probs=194.5
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEe--ee--C
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS--D 141 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~--s~--d 141 (1134)
|.+.+.+++|+|||++||+++.||+|++|++......... ...+.++...|.++ .+ +
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL-------------------SDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE-------------------EEEEECCSSCEEEEEECCGGG
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee-------------------cceeccCCCcEEEEEEcCCCC
Confidence 4567999999999999999999999999999754211100 00011223345444 44 4
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC--
Q 001165 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-- 219 (1134)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~-- 219 (1134)
++.+++++.||.|.+|+.+........ ... .....+..+...|.+++|+|+
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~--------~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~ 123 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSG--------RRW-------------------NKLCTLNDSKGSLYSVKFAPAHL 123 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSS--------CSE-------------------EEEEEECCCSSCEEEEEECCGGG
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccc--------cCc-------------------ceeeeecccCCceeEEEEcCCCC
Confidence 788999999999998776543211000 000 000124467889999999999
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccce----ecc---cccCCCCCeEEEEECCC---CCEEEEeeeCCeEEEEeccccc
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEF----IKI---DKELGSGDAVCASIAPE---QQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~----~~~---~~~~~~~~~~~va~spd---g~llAsG~~dg~V~lwd~~~~~ 289 (1134)
++.+++++.||.+.+|++........-. ... ....+...+.|++|+|+ +..+++|+.|+.+.+|+..
T Consensus 124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~--- 200 (351)
T 3f3f_A 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK--- 200 (351)
T ss_dssp CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT---
T ss_pred CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC---
Confidence 9999999999999999986543221100 000 00123467899999997 9999999999999877766
Q ss_pred cceeeeeeeccCcce--EEEEeecccCCCCcCeEEEEECCCC----CEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 290 SLIRTVSLYDWGMRE--VYYTFCRYSMDDTGPVSCIAWTPDN----SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~--~l~~l~~~~~~h~g~V~~l~fSPDG----~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
.++ .+.++.+ |.++|++++|+|+| ++|++|+.||.|++||+..+........+ ...+
T Consensus 201 ------------~~~~~~~~~~~~----h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 263 (351)
T 3f3f_A 201 ------------DGKLHVAAKLPG----HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES-LTNS 263 (351)
T ss_dssp ------------TSCEEEEEECCC----CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred ------------CCceeeeeecCC----CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc-ccce
Confidence 232 2444444 99999999999999 89999999999999999765433332221 1122
Q ss_pred eeeEEcCCCCCCcceEEEcc-------eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCC
Q 001165 364 SSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs-------~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
.....++.. ....++. ...+|+....+++....+|...| ++|++ ++.+++++.|+++++|++..++
T Consensus 264 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 264 NMFDNSADV----DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eccCCCccc----ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 222222222 1222211 45667777778888888999999 55555 8899999999999999987655
Q ss_pred C
Q 001165 434 D 434 (1134)
Q Consensus 434 ~ 434 (1134)
.
T Consensus 340 ~ 340 (351)
T 3f3f_A 340 E 340 (351)
T ss_dssp C
T ss_pred c
Confidence 4
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.1e-22 Score=229.29 Aligned_cols=240 Identities=11% Similarity=0.093 Sum_probs=187.5
Q ss_pred CCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC--CCEE
Q 001165 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD--NSAF 332 (1134)
Q Consensus 255 ~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD--G~~L 332 (1134)
|...+++++|+|++++||+|+.||+|++|++... +++.+..+.+ |.++|++++|+|+ |++|
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------THKLIDTLTG----HEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------EEEEEEEECC----CSSCEEEEEECCGGGCSEE
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------cceeeeEecC----CCCcEEEEEeCCCCCCCEE
Confidence 4578999999999999999999999999999721 3345556665 9999999999988 9999
Q ss_pred EEEECCCcEEEEecCCCe--eEEEeccCCCCceeeeEEcCC--CCCCcceEEEcc---eeEEEeCCCce--EEEEecCCC
Q 001165 333 AVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSS 403 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~~~~--l~~tl~~h~~~~V~sv~~sp~--~~~~~~~l~sgs---~i~~W~~~~~~--l~~~~~~h~ 403 (1134)
++|+.||.|++||+.++. ....+..| ...|.+++|+|+ + ..+++|+ .+++|+..+.. ......+|.
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred EEeccCCEEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCC----CEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 999999999999999886 66667666 678999999998 6 7777776 89999998762 334456788
Q ss_pred ccE--EEEec--------------CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEE
Q 001165 404 ERV--LIFSF--------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 467 (1134)
Q Consensus 404 ~~v--~~~s~--------------~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~ 467 (1134)
..| +.+++ ++.+++++.|+++++||+..+.... .+...+.+|..+|.+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRD 211 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce----------------eeEEEEecccCcEeE
Confidence 888 55555 5789999999999999987655421 113456789999999
Q ss_pred EEEcCC---CCEEEEEeCCCeE-EEEccCCc----EEEeCCccceeeeEEEEEEeeC--CEEEEEEEecCCCeeEEEEEe
Q 001165 468 VAASKD---GMFLAVAGLHGLI-LYDIRQKK----WRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 468 va~Spd---G~~LAsgg~dG~i-lwd~~sg~----Wk~F~~~~~e~~~~v~gl~W~~--~~lv~~~~~~~~~~~eLrly~ 537 (1134)
++|+|+ |++|++++.||.+ +||+.++. ...+....+ ...+..+.|.+ +++++++ .+..|++|+
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~-----~dg~i~iw~ 284 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF--PDVLWRASWSLSGNVLALSG-----GDNKVTLWK 284 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC--SSCEEEEEECSSSCCEEEEE-----SSSSEEEEE
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC--CCcEEEEEEcCCCCEEEEec-----CCCcEEEEe
Confidence 999999 9999999999999 99998873 233222212 23467788864 4566652 346689997
Q ss_pred CC
Q 001165 538 RY 539 (1134)
Q Consensus 538 ~~ 539 (1134)
..
T Consensus 285 ~~ 286 (379)
T 3jrp_A 285 EN 286 (379)
T ss_dssp EE
T ss_pred CC
Confidence 74
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.2e-23 Score=260.58 Aligned_cols=255 Identities=15% Similarity=0.083 Sum_probs=198.7
Q ss_pred ccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC--CCEEEEeeeCCeE
Q 001165 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE--QQILAVGTRRGVV 280 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd--g~llAsG~~dg~V 280 (1134)
.+.+|.+.|.+++|+|+++.+++++.||.+.+|+............. .+...+++++|+|+ +++|++|+.||+|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~----~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----GHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC----CCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc----CCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 35688999999999999999999999999999998643221111111 24578999999998 9999999999999
Q ss_pred EEEeccccccceeeeeeeccCcce--EEEEeecccCCCCcCeEEEEECCC--CCEEEEEECCCcEEEEecCCC--eeEEE
Q 001165 281 ELYDLAESASLIRTVSLYDWGMRE--VYYTFCRYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC--RLMST 354 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~--~l~~l~~~~~~h~g~V~~l~fSPD--G~~Lasg~~Dg~I~vWdv~~~--~l~~t 354 (1134)
++||+. +++ ....+.+ |.++|++++|+|+ |+.+++|+.||+|++||+.++ .....
T Consensus 80 ~vwd~~---------------~~~~~~~~~~~~----h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 80 LIWKEE---------------NGRWSQIAVHAV----HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp EEEEEE---------------TTEEEEEEEECC----CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred EEEECC---------------CCcccccccccC----CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence 999998 443 4445554 9999999999999 999999999999999999776 23444
Q ss_pred eccCCCCceeeeEEcCC-------------CCCCcceEEEcc---eeEEEeCCCc----eEEEEecCCCccEE--EEec-
Q 001165 355 IRQISLSSISSPIVKPN-------------QDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVL--IFSF- 411 (1134)
Q Consensus 355 l~~h~~~~V~sv~~sp~-------------~~~~~~~l~sgs---~i~~W~~~~~----~l~~~~~~h~~~v~--~~s~- 411 (1134)
+.+| ...|.+++|+|. + ..+++|+ ++++||..++ .+.....+|...|. ++++
T Consensus 141 ~~~~-~~~v~~l~~~p~~~~~~~~~~~~~d~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 141 IDAH-AIGVNSASWAPATIEEDGEHNGTKES----RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp EECC-SSCEEEEEECCCC---------CGGG----CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred eecC-CCceEEEEecCcccccccccccCCCC----CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 5555 678999999994 4 6777776 8999998765 66677788999984 4554
Q ss_pred ---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-E
Q 001165 412 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 487 (1134)
Q Consensus 412 ---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-l 487 (1134)
++.+++++.|+++++|++..+.... ........+|..+|++++|+|+|+++++|+.||.+ +
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPW---------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCC---------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcc---------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 3678999999999999987654310 00122334688899999999999999999999999 9
Q ss_pred EEccC-CcEEEeCC
Q 001165 488 YDIRQ-KKWRVFGD 500 (1134)
Q Consensus 488 wd~~s-g~Wk~F~~ 500 (1134)
|++.+ ++|...+.
T Consensus 281 wd~~~~~~~~~~~~ 294 (753)
T 3jro_A 281 WKENLEGKWEPAGE 294 (753)
T ss_dssp CBCCSSSCCBCCCC
T ss_pred EecCCCCCcccccc
Confidence 99984 55655443
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.5e-22 Score=235.31 Aligned_cols=249 Identities=14% Similarity=0.052 Sum_probs=184.3
Q ss_pred CCCcccEEEEEEcCCCCeE-EEEEcCCeEEEEEec--cCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 205 FPISSAIIWLELCLPMRLL-FVLYSNGQLMSCSVS--KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~l-a~~~sDG~v~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
.++.+.|.+++|+|+++.+ ++++.||.+.+|++. ...... .+.. ..+...+++++|+|++++|++|+.||.|+
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~--~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~g~v~ 174 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK--LRKR--FCFSKRPNAISIAEDDTTVIIADKFGDVY 174 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE--EEEE--EECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee--eeec--ccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence 3567789999999999996 888899999999997 433211 1110 01236789999999999999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC---CCEEEEEECCCcEEEEecCCCeeEEEe-cc
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD---NSAFAVGWKSRGLTVWSVSGCRLMSTI-RQ 357 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD---G~~Lasg~~Dg~I~vWdv~~~~l~~tl-~~ 357 (1134)
+|++.+..... +....+.+ |.+.|++++|+|| |++|++|+.|++|++||+.++.++.++ .+
T Consensus 175 ~~~~~~~~~~~-----------~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 175 SIDINSIPEEK-----------FTQEPILG----HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEETTSCCCSS-----------CCCCCSEE----CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EEecCCccccc-----------ccceeeec----ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 99997322100 01123344 9999999999999 999999999999999999988877774 45
Q ss_pred CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC-------------------------CccE--E
Q 001165 358 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-------------------------SERV--L 407 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h-------------------------~~~v--~ 407 (1134)
| ...|.+++|+ ++ ..+++|+ ++++||..+++++.....+ ...+ +
T Consensus 240 h-~~~v~~~~~s-d~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 240 H-KHFVSSICCG-KD----YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp C-SSCEEEEEEC-ST----TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred C-CCceEEEEEC-CC----CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 5 7899999999 87 8888877 9999999999887766422 1234 4
Q ss_pred EEec-CCEEEeee-cCCcEEeeee--eeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC-
Q 001165 408 IFSF-GKCCLNRG-VSGMTYARQV--IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL- 482 (1134)
Q Consensus 408 ~~s~-~k~l~S~s-~d~ti~~w~l--~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~- 482 (1134)
.+++ ++.+++++ .|+++++|++ ..+.. + .....+.+| .+|.+++|+|++.++++++.
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~-l----------------~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~ 375 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGD-L----------------ALKQIITFP-YNVISLSAHNDEFQVTLDNKE 375 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTC-E----------------EEEEEEECS-SCEEEEEEETTEEEEEECCTT
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCc-e----------------eeccEeccC-CceEEEEecCCcEEEEEeccc
Confidence 5555 88888888 8999999998 33221 1 112345566 78999999997655555554
Q ss_pred -----CCeE-EEEc--cCCcEE
Q 001165 483 -----HGLI-LYDI--RQKKWR 496 (1134)
Q Consensus 483 -----dG~i-lwd~--~sg~Wk 496 (1134)
+..+ +|.+ .+++|.
T Consensus 376 ~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 376 SSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp CCSSCCCSEEEEEEETTTTEEE
T ss_pred CCCCCCcceEEEEEEcCCCeEE
Confidence 3446 7765 456665
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=9.2e-22 Score=225.07 Aligned_cols=280 Identities=11% Similarity=0.096 Sum_probs=196.8
Q ss_pred ccCCCcccEEEEEEcCC---CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe
Q 001165 203 HKFPISSAIIWLELCLP---MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV 279 (1134)
Q Consensus 203 ~~~~~~~~V~~i~fsp~---~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~ 279 (1134)
.+.+|...|.+++|+|+ ++.+++++.||.+.+|++............ .+...+++++|+|++++|++|+.||+
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ----MHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec----cccCCEEEEEECcCCCEEEEEcCCCc
Confidence 35678999999999999 699999999999999999752221111111 24578999999999999999999999
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEE--CCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW--TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f--SPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
|++||+. +++.+. +.+ |.++|++++| +|+|++|++|+.||.|++||+.+++++.++..
T Consensus 110 v~iwd~~---------------~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 110 AKMWDLS---------------SNQAIQ-IAQ----HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp EEEEETT---------------TTEEEE-EEE----CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred EEEEEcC---------------CCCcee-ecc----ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 9999998 555444 334 9999999999 99999999999999999999999888888876
Q ss_pred CCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEec----CCCccEEEEec-CCE----EEeeecCCcEEee
Q 001165 358 ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE----GSSERVLIFSF-GKC----CLNRGVSGMTYAR 427 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~~----~h~~~v~~~s~-~k~----l~S~s~d~ti~~w 427 (1134)
+ ..+.++.+.++. ..+.++. .+.+|+........... .+......+.+ ... +++++.|+.+++|
T Consensus 170 ~--~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 170 P--ERCYCADVIYPM----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp S--SCEEEEEEETTE----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred C--CCceEEEecCCe----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 5 356666665542 2222222 89999997754333221 23333444444 322 8999999999999
Q ss_pred eeeeCCC--eEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE-EeCCccc
Q 001165 428 QVIYGED--RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQ 503 (1134)
Q Consensus 428 ~l~~~~~--~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk-~F~~~~~ 503 (1134)
++..... .+..+.++.. ........+|..+|++++|+|+|++||+|+.||.+ +||+.+++.. .+. .+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~ 314 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRS-------NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QL 314 (368)
T ss_dssp ESSCSCHHHHSEEEECSEE-------C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CC
T ss_pred ecCCCCccccceeeeeeec-------ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CC
Confidence 9765432 1111111000 00011122333489999999999999999999999 9999987532 222 11
Q ss_pred eeeeEEEEEEeeC--CEEEEEE
Q 001165 504 EQKIQSKGLLWLG--KIIVVCN 523 (1134)
Q Consensus 504 e~~~~v~gl~W~~--~~lv~~~ 523 (1134)
...+..+.|.+ .++++|+
T Consensus 315 --~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 315 --DQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp --SSCEEEEEECTTSSCEEEEE
T ss_pred --CCCceEEEECCCCCeEEEEe
Confidence 23477888864 4666663
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=5.6e-22 Score=229.09 Aligned_cols=308 Identities=9% Similarity=0.007 Sum_probs=190.4
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeE
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~l 145 (1134)
+.+.+.+++|||||++||+++.+| +++|+++... .... .. .. ...+.++.++++.+
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~-~~~~----------------~~----~~--~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA-HIMS----------------QE----MR--HLSKVRMLHRTNYV 73 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE-EEEE----------------EE----CS--CCCEEEECTTSSEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc-eeee----------------ee----cC--CeEEEEEcCCCCEE
Confidence 456789999999999999998876 7899975321 1110 00 00 12345566666666
Q ss_pred -EEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEE
Q 001165 146 -LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1134)
Q Consensus 146 -lv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la 224 (1134)
++++.+++|.+|+.. ...... .+ .+...|.++.|+++. ++
T Consensus 74 ~~~~~~d~~v~iWd~~--~~~~~~----------------------------------~~-~~~~~v~~v~~~~~~--~~ 114 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDV--KKQDVS----------------------------------RI-KVDAPVKDLFLSREF--IV 114 (355)
T ss_dssp EEECSSTTEEEEEETT--TTEEEE----------------------------------EE-ECSSCEEEEEECSSE--EE
T ss_pred EEEECCccEEEEEECC--CCcEEE----------------------------------EE-ECCCceEEEEEcCCE--EE
Confidence 456667888875543 222110 01 134578999999864 33
Q ss_pred EEEcCCeEEEEEeccC-CccccceecccccCCCCCeEEEEECCCCCEEEE--eeeCCeEEEEeccccccceeeeeeeccC
Q 001165 225 VLYSNGQLMSCSVSKK-GLKLAEFIKIDKELGSGDAVCASIAPEQQILAV--GTRRGVVELYDLAESASLIRTVSLYDWG 301 (1134)
Q Consensus 225 ~~~sDG~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs--G~~dg~V~lwd~~~~~~~~~~l~l~~~~ 301 (1134)
++ .|+++++|++... ... ..+. .....++++| ..+|+ |+.||+|++||+.........-......
T Consensus 115 ~~-~~~~i~i~d~~~~~~~~--~~~~-------~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~ 182 (355)
T 3vu4_A 115 VS-YGDVISVFKFGNPWKRI--TDDI-------RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK 182 (355)
T ss_dssp EE-ETTEEEEEESSTTCCBS--SCCE-------EEEEEEEEET--TEEEEEESSCTTCEEEEECCC--------------
T ss_pred EE-EcCEEEEEECCCCceee--EEec-------cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccc
Confidence 33 5899999998754 211 1111 1233566777 56666 6899999999998422100000000000
Q ss_pred cceE-EEEeecccCCCCcCeEEEEECCCCCEEEEEECCCc-EEEEecCCCeeEEEec-cCCCCceeeeEEcCCCCCCcce
Q 001165 302 MREV-YYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQDCKYEP 378 (1134)
Q Consensus 302 ~~~~-l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~-I~vWdv~~~~l~~tl~-~h~~~~V~sv~~sp~~~~~~~~ 378 (1134)
.-++ +.++.+ |.++|++++|+|||++||+|+.||+ |+|||+.+++++.++. ++|...|.+++|+|++ ..
T Consensus 183 ~~~p~~~~~~~----h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~----~~ 254 (355)
T 3vu4_A 183 AILGKGVLIKA----HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG----SK 254 (355)
T ss_dssp ----CCEEECC----CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS----CE
T ss_pred ccCcccEEEEc----cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC----CE
Confidence 0011 455555 9999999999999999999999999 9999999999999998 5247899999999998 78
Q ss_pred EEEcc---eeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc
Q 001165 379 LMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 455 (1134)
Q Consensus 379 l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~ 455 (1134)
+++|+ ++++|++..+... .... +...+.....+ ..|.+.. ..++
T Consensus 255 l~s~s~d~~v~iw~~~~~~~~--------~~~~--~~~~~~~~~~~---~~~~~~~--------------------~~~~ 301 (355)
T 3vu4_A 255 LAVVSDKWTLHVFEIFNDQDN--------KRHA--LKGWINMKYFQ---SEWSLCN--------------------FKLS 301 (355)
T ss_dssp EEEEETTCEEEEEESSCCSCC--------CSEE--TTTTEECCCCC---CSSCSEE--------------------EECC
T ss_pred EEEEECCCEEEEEEccCCCCc--------cccc--ccceeeccccc---cccceeE--------------------EEec
Confidence 88776 7889988654210 0000 00000000000 0111100 0011
Q ss_pred eeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 456 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 456 ~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
. .+..+...++|++||++|++++.||.+ +|++..
T Consensus 302 ~---~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 302 V---DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp C---CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred c---CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 1 122345679999999999999999999 998754
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=7.5e-22 Score=225.81 Aligned_cols=275 Identities=15% Similarity=0.214 Sum_probs=187.8
Q ss_pred CCcee--EEEeec---CeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEE
Q 001165 20 SSQQI--IYFKVN---NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHI 93 (1134)
Q Consensus 20 ~~~~i--v~fS~d---g~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~l 93 (1134)
|...| ++|+|+ |++||+++ |++|+||+.......+..... .+.+.+.+++|+|||++|++++.||+|++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 44444 899999 69999877 679999999742333312111 14567899999999999999999999999
Q ss_pred EEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEE--e--eeCCCeEEEEecCCcEEEEecCCccccceec
Q 001165 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--I--VSDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1134)
Q Consensus 94 w~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~--~--s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~ 169 (1134)
||+.... ..... .+...|.+ + .+++..+++++.||.+.+|+.... ....
T Consensus 113 wd~~~~~-~~~~~-----------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~- 165 (368)
T 3mmy_A 113 WDLSSNQ-AIQIA-----------------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS--NPMM- 165 (368)
T ss_dssp EETTTTE-EEEEE-----------------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS--SCSE-
T ss_pred EEcCCCC-ceeec-----------------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC--cEEE-
Confidence 9986431 11110 11223333 3 456677999999999987544322 1110
Q ss_pred cccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceec
Q 001165 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (1134)
Q Consensus 170 ~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~ 249 (1134)
.+. ....+.++.+.+ ..+++++.+|.+.+|+......... ...
T Consensus 166 ---------------------------------~~~-~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 208 (368)
T 3mmy_A 166 ---------------------------------VLQ-LPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFR-RIE 208 (368)
T ss_dssp ---------------------------------EEE-CSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEE-ECC
T ss_pred ---------------------------------EEe-cCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhh-hcc
Confidence 001 112455555554 4788899999999999865432111 110
Q ss_pred ccccCCCCCeEEEEECCCCCE----EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeec--------ccCCCC
Q 001165 250 IDKELGSGDAVCASIAPEQQI----LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCR--------YSMDDT 317 (1134)
Q Consensus 250 ~~~~~~~~~~~~va~spdg~l----lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~--------~~~~h~ 317 (1134)
........++++.++... +++|+.||.|++|+++..... +....+.+ ...+|.
T Consensus 209 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
T 3mmy_A 209 ---SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA------------KDNFTFKCHRSNGTNTSAPQDI 273 (368)
T ss_dssp ---CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH------------HHSEEEECSEEC----CCCEEE
T ss_pred ---ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc------------ccceeeeeeecccccccccccc
Confidence 012245566766665554 999999999999999843210 11222222 011134
Q ss_pred cCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 318 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 318 g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
.+|++++|+|||++|++|+.||.|++||+.++.++.++.+| ...|++++|+|++ ..+++|+
T Consensus 274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g----~~l~~~s 334 (368)
T 3mmy_A 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNG----NIFAYAS 334 (368)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTS----SCEEEEE
T ss_pred cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCC----CeEEEEe
Confidence 48999999999999999999999999999999999999887 6789999999999 8888876
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-21 Score=233.13 Aligned_cols=306 Identities=11% Similarity=-0.014 Sum_probs=206.3
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCC---cc-ccceecc----------------------------------
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG---LK-LAEFIKI---------------------------------- 250 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~---~~-~~~~~~~---------------------------------- 250 (1134)
.++.+++|+|+|++++ +..++.+.+|++..+. .. .......
T Consensus 5 ~p~~~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4577899999999555 4578899999986544 10 0000000
Q ss_pred -------------cccCCCCCeEEEEECCCCCEE-EEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCC
Q 001165 251 -------------DKELGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDD 316 (1134)
Q Consensus 251 -------------~~~~~~~~~~~va~spdg~ll-AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h 316 (1134)
..-.+.+.+++++|+|+++.| |+|+.||+|++|++... +++.+..+.. ..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~-------------~~~~~~~~~~--~~~ 148 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKT-------------SKNVLKLRKR--FCF 148 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSS-------------SSSCEEEEEE--EEC
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCC-------------CCceeeeeec--ccC
Confidence 000012368999999999996 99999999999999721 1222333321 127
Q ss_pred CcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEE----EeccCCCCceeeeEEcCC---CCCCcceEEEcc---eeE
Q 001165 317 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS----TIRQISLSSISSPIVKPN---QDCKYEPLMSGT---SMM 386 (1134)
Q Consensus 317 ~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~----tl~~h~~~~V~sv~~sp~---~~~~~~~l~sgs---~i~ 386 (1134)
.+.|++++|+|||++|++|+.||.+.+|++.++.... ++.+| ...|++++|+|+ + ..+++|+ +++
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~----~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGH----QFIITSDRDEHIK 223 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSC----EEEEEEETTSCEE
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-cCceEEEEEcCCCCCC----cEEEEEcCCCcEE
Confidence 7899999999999999999999999999997765443 56666 678999999999 7 7888877 899
Q ss_pred EEeCCCceEEEE-ecCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCC-Ccccc--ccccc---ccee
Q 001165 387 QWDEYGYRLYAI-EEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED-TDELK--ILHLN---LPVS 457 (1134)
Q Consensus 387 ~W~~~~~~l~~~-~~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~-~~~~~--w~~~~---~~~~ 457 (1134)
+|++.+++++.. ..+|...|..+.+ ++.+++++.|+++++||+..+.. +..+.... ...+. ++... .+..
T Consensus 224 vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 224 ISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp EEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC--------
T ss_pred EEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccc
Confidence 999998887766 5689988866666 78999999999999999876543 22221110 00000 00000 0001
Q ss_pred eccCCCceEEEEEcCCCCEEEEEe-CCCeE-EEEc--cC-CcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCC---C
Q 001165 458 YISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDI--RQ-KKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS---N 529 (1134)
Q Consensus 458 ~~~h~~~V~~va~SpdG~~LAsgg-~dG~i-lwd~--~s-g~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~---~ 529 (1134)
.......|..++++|+|++|++++ .+|.+ +|++ .+ ++++........ ..+.++.|.++.++++...... .
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~ 380 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQ 380 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSC
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCC
Confidence 113345799999999999999999 89999 9999 44 333332222111 3477889988766655332211 2
Q ss_pred eeEEEEEeC
Q 001165 530 TYELLFYPR 538 (1134)
Q Consensus 530 ~~eLrly~~ 538 (1134)
+..|++|..
T Consensus 381 ~~~i~v~~~ 389 (450)
T 2vdu_B 381 KNFAKFIEY 389 (450)
T ss_dssp CCSEEEEEE
T ss_pred CcceEEEEE
Confidence 455777765
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=1.2e-21 Score=232.47 Aligned_cols=266 Identities=11% Similarity=0.106 Sum_probs=196.1
Q ss_pred CCCcccEEEEEEcCC-CCeEEEEEcCCeEEEEEeccCCccc-----cceecccccCCCCCeEEEEECCCCC-EEEEeeeC
Q 001165 205 FPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKL-----AEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRR 277 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~-~~~la~~~sDG~v~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~d 277 (1134)
..|.+.|.+++|+|+ ++.+++++.||.|.+|++....... ...... ...+...+++++|+|+++ +|++|+.|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE-EECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 457788999999998 6899999999999999987521100 000000 012456789999999998 99999999
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCC---eeEE
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC---RLMS 353 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~---~l~~ 353 (1134)
|+|++|++.........+ .....+.+ |.+.|.+++|+| ++..|++++.||.|++||+..+ ....
T Consensus 204 g~i~vwd~~~~~~~~~~~--------~~~~~~~~----h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVI--------DAKNIFTG----HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp SCEEEEETTSCCBGGGEE--------ECSEEECC----CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CeEEEEeCCCCCCCCcee--------ccceeecC----CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee
Confidence 999999998432111110 01223333 999999999999 7889999999999999999876 5666
Q ss_pred EeccCCCCceeeeEEcCCCCCCcc-eEEEcc---eeEEEeCCC-ceEEEEecCCCccE--EEEec-CC-EEEeeecCCcE
Q 001165 354 TIRQISLSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYG-YRLYAIEEGSSERV--LIFSF-GK-CCLNRGVSGMT 424 (1134)
Q Consensus 354 tl~~h~~~~V~sv~~sp~~~~~~~-~l~sgs---~i~~W~~~~-~~l~~~~~~h~~~v--~~~s~-~k-~l~S~s~d~ti 424 (1134)
++..| ...|++++|+|++ + .+++|+ ++++|+.+. .+.+....+|...| +++++ ++ .+++++.|+++
T Consensus 272 ~~~~~-~~~v~~i~~~p~~----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 272 TVDAH-TAEVNCLSFNPYS----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp EEECC-SSCEEEEEECSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred EeecC-CCCeEEEEeCCCC----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 77666 6789999999987 5 566766 899999987 56677777888888 45555 54 68899999999
Q ss_pred EeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCC-EEEEEeCCCeE-EEEccCCc
Q 001165 425 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 425 ~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~-~LAsgg~dG~i-lwd~~sg~ 494 (1134)
++|++......... .+..-...++...+.+|..+|++++|+|+|+ ++++++.||.+ +|++..+.
T Consensus 347 ~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 347 HVWDLSKIGEEQST------EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EEEEGGGTTCCCCH------HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EEEeCCCCccccCc------cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 99998663321000 0000000112345568899999999999999 99999999999 99997664
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=5.7e-21 Score=220.61 Aligned_cols=235 Identities=12% Similarity=0.136 Sum_probs=162.4
Q ss_pred eeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEE-EeCCCEEEEEEEEecCc
Q 001165 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav-~t~dg~l~lw~l~~~~~ 101 (1134)
..++|||||++||+++++.++||+.+ +...+.. + +++.+..++|+|+++.+++ ++.+++|++||+..+.
T Consensus 23 ~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~- 92 (355)
T 3vu4_A 23 TDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMS--Q------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ- 92 (355)
T ss_dssp CEEEECTTSSEEEEECSSEEEEEEET-TEEEEEE--E------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE-
T ss_pred EEEEECCCCCEEEEEcCCEEEEEecC-Ccceeee--e------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc-
Confidence 34899999999999999999999997 4333222 1 1234678999999998854 5677899999985431
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~ 181 (1134)
.+ ..+. ....|.++..+++.++++ .++.+++|+..... ... .
T Consensus 93 ~~------------~~~~-----------~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~-~~~------------~- 134 (355)
T 3vu4_A 93 DV------------SRIK-----------VDAPVKDLFLSREFIVVS-YGDVISVFKFGNPW-KRI------------T- 134 (355)
T ss_dssp EE------------EEEE-----------CSSCEEEEEECSSEEEEE-ETTEEEEEESSTTC-CBS------------S-
T ss_pred EE------------EEEE-----------CCCceEEEEEcCCEEEEE-EcCEEEEEECCCCc-eee------------E-
Confidence 11 1110 012466777777776666 47888876554320 111 0
Q ss_pred ccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEE--EEcCCeEEEEEeccCCccc-----c-----ce-e
Q 001165 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV--LYSNGQLMSCSVSKKGLKL-----A-----EF-I 248 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~--~~sDG~v~l~~~~~~~~~~-----~-----~~-~ 248 (1134)
.+.. ....+++++ +.+++ ++.||.+.+|++....... . .. .
T Consensus 135 ---------------------~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~ 188 (355)
T 3vu4_A 135 ---------------------DDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKG 188 (355)
T ss_dssp ---------------------CCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CC
T ss_pred ---------------------Eecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCccc
Confidence 0001 233455666 66666 4789999999987533100 0 00 0
Q ss_pred cccccCCCCCeEEEEECCCCCEEEEeeeCCe-EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC
Q 001165 249 KIDKELGSGDAVCASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP 327 (1134)
Q Consensus 249 ~~~~~~~~~~~~~va~spdg~llAsG~~dg~-V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP 327 (1134)
.. ...|...+++++|+|+|++||+|+.||+ |++||+. +++.+.++.. ..|.++|++++|+|
T Consensus 189 ~~-~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~---------------~~~~~~~~~~--g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 189 VL-IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE---------------DGVLVREFRR--GLDRADVVDMKWST 250 (355)
T ss_dssp EE-ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT---------------TCCEEEEEEC--TTCCSCEEEEEECT
T ss_pred EE-EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC---------------CCcEEEEEEc--CCCCCcEEEEEECC
Confidence 00 1124578999999999999999999998 9999999 7778777652 02899999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001165 328 DNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 328 DG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
||++||+|+.|++|+|||+..+
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCC
T ss_pred CCCEEEEEECCCEEEEEEccCC
Confidence 9999999999999999999754
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.1e-22 Score=253.64 Aligned_cols=249 Identities=16% Similarity=0.137 Sum_probs=185.0
Q ss_pred hhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEe--eeC--
Q 001165 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSD-- 141 (1134)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~--s~d-- 141 (1134)
|.+.+.+++|+|||++||+++.||+|+||++......... .+.++...|.++ +++
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~---------------------~l~~h~~~V~~l~~s~~~~ 66 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID---------------------TLTGHEGPVWRVDWAHPKF 66 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE---------------------EECCCSSCEEEEEECCTTS
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccce---------------------eccCCcCceEEEEecCCCC
Confidence 4678999999999999999999999999999732111100 011223345444 445
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC--
Q 001165 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-- 219 (1134)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~-- 219 (1134)
++.+++|+.||.|++|+.+....... ....+|...|.+++|+|+
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~----------------------------------~~~~~h~~~V~~v~~sp~~~ 112 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQI----------------------------------AVHAVHSASVNSVQWAPHEY 112 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEE----------------------------------EEECCCSSCEEEEEECCGGG
T ss_pred CCEEEEEeCCCeEEEEECCCCccccc----------------------------------ccccCCCCCeEEEEECCCCC
Confidence 78899999999999876554211111 023467889999999999
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC-------------CCCEEEEeeeCCeEEEEecc
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-------------EQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-------------dg~llAsG~~dg~V~lwd~~ 286 (1134)
++.+++++.||.+.+|++............ .+...+++++|+| +++++++|+.||+|++||+.
T Consensus 113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~----~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 113 GPLLLVASSDGKVSVVEFKENGTTSPIIID----AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp CSEEEEEETTSEEEEEECCSSSCCCCEEEE----CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred CCEEEEEeCCCcEEEEEeecCCCcceeEee----cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 999999999999999998765322211111 2457899999999 58999999999999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC---CCEEEEEECCCcEEEEecCCCe-----eEEEeccC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD---NSAFAVGWKSRGLTVWSVSGCR-----LMSTIRQI 358 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD---G~~Lasg~~Dg~I~vWdv~~~~-----l~~tl~~h 358 (1134)
.... ......++.+ |.++|++++|+|+ |++|++|+.||.|++||+.++. ......+|
T Consensus 189 ~~~~-----------~~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 253 (753)
T 3jro_A 189 SDAQ-----------TYVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (753)
T ss_dssp TTTT-----------EEEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC
T ss_pred CCcc-----------cceeeeeecC----CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC
Confidence 3221 1134455555 9999999999999 9999999999999999998753 11122223
Q ss_pred CCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCc
Q 001165 359 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY 393 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~ 393 (1134)
...|++++|+|++ ..+++|+ .+++|+..++
T Consensus 254 -~~~v~~l~~spdg----~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 254 -PDVLWRASWSLSG----NVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp -SSCCCCEEECTTT----CCEEEECSSSCEECCBCCSS
T ss_pred -CCceEEEEEcCCC----CEEEEEcCCCEEEEEecCCC
Confidence 6789999999998 7888876 8999998753
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.2e-21 Score=218.17 Aligned_cols=240 Identities=9% Similarity=0.018 Sum_probs=177.1
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeee
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l 295 (1134)
+.++++.+++++.||.+++|+........ .+. ...+.+++++|+ +++|+.|++|++|+.+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~--~~~------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~------ 106 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTIT--TIT------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI------ 106 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEE--EEE------EECCCTTCCCCS---EEEECSTTEEEEEETTTEE------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEE--EEe------cCCceeeeeCCc---eEEecCCCeEEEEEccCce------
Confidence 45677889999999999999997543321 111 134556788888 9999999999999987321
Q ss_pred eeeccCcceEEEEeecccCCCCcCeEEEEECC--CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCC
Q 001165 296 SLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 373 (1134)
Q Consensus 296 ~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP--DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~ 373 (1134)
.+.+..+++.+.... .+|.++|.+++|+| +|+++++|+.||+|++||+.++++......++...|.+++|+|++
T Consensus 107 ~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg- 182 (343)
T 3lrv_A 107 TILDSKTNKVLREIE---VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS- 182 (343)
T ss_dssp EEEETTTCCEEEEEE---CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-
T ss_pred EEeecCCcceeEEee---cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-
Confidence 111111344444433 24889999999999 999999999999999999999888777766556689999999998
Q ss_pred CCcceEEEcc---eeEEEeCCCceEE-EEecC-CCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCc
Q 001165 374 CKYEPLMSGT---SMMQWDEYGYRLY-AIEEG-SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 445 (1134)
Q Consensus 374 ~~~~~l~sgs---~i~~W~~~~~~l~-~~~~~-h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~ 445 (1134)
..+++|+ .+++||.++++.. ....+ |...| ++|++ ++.+++++ |+++++||+..+...
T Consensus 183 ---~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~---------- 248 (343)
T 3lrv_A 183 ---LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT---------- 248 (343)
T ss_dssp ---CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC----------
T ss_pred ---CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc----------
Confidence 8899876 9999999998876 66666 89999 55666 88999999 559999998765431
Q ss_pred cccccccccceeeccCCCceE--EEEEcCCCCEEEEEeC-CCeE-EEEccC--CcEEE
Q 001165 446 ELKILHLNLPVSYISQNWPVQ--HVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRV 497 (1134)
Q Consensus 446 ~~~w~~~~~~~~~~~h~~~V~--~va~SpdG~~LAsgg~-dG~i-lwd~~s--g~Wk~ 497 (1134)
.....+..|..++. +++|+|+|++||+++. |+.+ +|++.. +.|..
T Consensus 249 -------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 249 -------LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp -------BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred -------eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 00111222444444 6999999999999998 9999 999844 34654
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-21 Score=223.51 Aligned_cols=267 Identities=10% Similarity=-0.067 Sum_probs=190.7
Q ss_pred eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEc
Q 001165 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1134)
Q Consensus 138 ~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs 217 (1134)
+..++..+++|+.||.|++|+.+.. .... . +. ...|.++.|+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~--~~~~------------~----------------------~~--~~~v~~~~~~ 85 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDS--KTIT------------T----------------------IT--TPNPRTGGEH 85 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSS--SCEE------------E----------------------EE--EECCCTTCCC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCC--cEEE------------E----------------------Ee--cCCceeeeeC
Confidence 3456788999999999998765432 1110 0 00 2334455667
Q ss_pred CCCCeEEEEEcCCeEEEEEeccCC----ccccceecccccCCCCCeEEEEECC--CCCEEEEeeeCCeEEEEeccccccc
Q 001165 218 LPMRLLFVLYSNGQLMSCSVSKKG----LKLAEFIKIDKELGSGDAVCASIAP--EQQILAVGTRRGVVELYDLAESASL 291 (1134)
Q Consensus 218 p~~~~la~~~sDG~v~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~va~sp--dg~llAsG~~dg~V~lwd~~~~~~~ 291 (1134)
|. +++++.||++.+|+..... ......+......+...+++++|+| +++++++|+.||+|++||+.
T Consensus 86 ~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~----- 157 (343)
T 3lrv_A 86 PA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE----- 157 (343)
T ss_dssp CS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-----
T ss_pred Cc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-----
Confidence 76 8889999999999765321 0011101111112346799999999 99999999999999999998
Q ss_pred eeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeE-EEeccCCCCceeeeEEcC
Q 001165 292 IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKP 370 (1134)
Q Consensus 292 ~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~-~tl~~h~~~~V~sv~~sp 370 (1134)
+++....... .|...|++++|+|||.+||+|+.||.|++||+.++... .++...|...|++++|+|
T Consensus 158 ----------~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 158 ----------DDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp ----------SSCEEEEECC---CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT
T ss_pred ----------CCcEEEEEec---CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC
Confidence 5555444322 25668999999999999999999999999999988877 788872378999999999
Q ss_pred CCCCCcceEEEcc--eeEEEeCCCceEEEEecC---CCcc----EEEEec-CCEEEeeec-CCcEEeeeeeeCCCeEEEe
Q 001165 371 NQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG---SSER----VLIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVV 439 (1134)
Q Consensus 371 ~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~~---h~~~----v~~~s~-~k~l~S~s~-d~ti~~w~l~~~~~~l~l~ 439 (1134)
++ ..+++|+ ++++||+++++....... |... .++|++ ++.+++++. |+.+++|++......
T Consensus 225 ~g----~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~---- 296 (343)
T 3lrv_A 225 NG----YWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN---- 296 (343)
T ss_dssp TS----SEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS----
T ss_pred CC----CEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc----
Confidence 98 8888876 899999988765433322 2222 377888 899999888 999999997554331
Q ss_pred ecCCCccccccccccceeeccCCCceEEEEEcC---CCCEEEEEeCCCeE-EEEcc
Q 001165 440 QSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 440 ~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp---dG~~LAsgg~dG~i-lwd~~ 491 (1134)
|.. .++..++|+| +++.+++++.||.+ ++-..
T Consensus 297 ---------~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 297 ---------WTK-----------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---------EEE-----------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ---------eEe-----------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 111 4678889998 99999999999998 65443
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=9.9e-20 Score=211.59 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=192.4
Q ss_pred CeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEE-EEEeCCCEEEEEEEEecCcceecCCC
Q 001165 31 NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGK 108 (1134)
Q Consensus 31 g~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~L-av~t~dg~l~lw~l~~~~~~~~~~~~ 108 (1134)
+.++++++ +++|++||.. .+..+.... .++.+.+++|+|||+.| ++++.+++|++||+..........
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-- 71 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-- 71 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--
Confidence 34566665 6799999997 333333221 23457899999999987 556689999999985431100000
Q ss_pred CCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCC
Q 001165 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (1134)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~ 187 (1134)
.. ......+++++++.++++. .++.|.+|+.... ....
T Consensus 72 -------------------~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--~~~~------------------- 110 (391)
T 1l0q_A 72 -------------------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAG------------------- 110 (391)
T ss_dssp -------------------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEE-------------------
T ss_pred -------------------CC-CCccceEECCCCCEEEEEECCCCEEEEEECCCC--eEEE-------------------
Confidence 00 0112345677888887665 4588887654322 1110
Q ss_pred CccccccCCCcccccccCCCcccEEEEEEcCCCCeE-EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC
Q 001165 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL-FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP 266 (1134)
Q Consensus 188 ~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l-a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp 266 (1134)
.......+.+++|+|+++.+ +++..||.+++|+........ .+ .....+.+++|+|
T Consensus 111 ----------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~-----~~~~~~~~~~~~~ 167 (391)
T 1l0q_A 111 ----------------TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN--TV-----SVGRSPKGIAVTP 167 (391)
T ss_dssp ----------------EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--EE-----ECCSSEEEEEECT
T ss_pred ----------------EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE--EE-----ecCCCcceEEECC
Confidence 01123457899999999977 566679999999986433211 11 1225678999999
Q ss_pred CCCEE-EEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE---CCCcEE
Q 001165 267 EQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW---KSRGLT 342 (1134)
Q Consensus 267 dg~ll-AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~---~Dg~I~ 342 (1134)
+++.+ ++++.+|+|++||+. +++....+. +.+.+.+++|+|||++|++++ .++.|+
T Consensus 168 dg~~l~~~~~~~~~v~~~d~~---------------~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 168 DGTKVYVANFDSMSISVIDTV---------------TNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETT---------------TTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred CCCEEEEEeCCCCEEEEEECC---------------CCeEEEEEe-----cCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 99877 677889999999998 566555543 456789999999999999988 689999
Q ss_pred EEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceE-EEcc---eeEEEeCCCceEEEEecCCCc
Q 001165 343 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSSE 404 (1134)
Q Consensus 343 vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l-~sgs---~i~~W~~~~~~l~~~~~~h~~ 404 (1134)
+||+.+++.+..+..+ ..+.+++|+|++ +.+ +++. ++++||..++++......|..
T Consensus 228 ~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 228 MIDTGTNKITARIPVG--PDPAGIAVTPDG----KKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEETTTTEEEEEEECC--SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEECCCCeEEEEEecC--CCccEEEEccCC----CEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 9999999888888775 357899999998 655 5544 899999999998877655543
No 121
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.4e-19 Score=238.54 Aligned_cols=231 Identities=11% Similarity=0.003 Sum_probs=171.3
Q ss_pred EEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceec---cccc-CCCCCeEEEEEC-CCCCEEEEeeeCCeEEEEec
Q 001165 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---IDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~---~~~~-~~~~~~~~va~s-pdg~llAsG~~dg~V~lwd~ 285 (1134)
+...+|+|+|+.++++ .++.+++|+............. ...+ .+...+.+++|| |+|+.||+++ ++.|.+|++
T Consensus 247 ~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred cceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 4556899999998887 5899999987322111100000 0000 012357799999 9999999987 889999998
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCc-CeEEEEECCCCCEEEEEECCCcEE-EEecCCCeeEEEeccCCCCce
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLT-VWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g-~V~~l~fSPDG~~Lasg~~Dg~I~-vWdv~~~~l~~tl~~h~~~~V 363 (1134)
. +++.. .+.. |.+ .+.+++|+ ||+.|++++.++.+. +|++.++... .+.+| ...+
T Consensus 325 ~---------------~~~~~-~~~~----~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~ 381 (1045)
T 1k32_A 325 S---------------GTYVL-KVPE----PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNV 381 (1045)
T ss_dssp T---------------SSBEE-ECSC----CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSE
T ss_pred C---------------CCceE-EccC----CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccce
Confidence 7 33322 2222 677 89999999 999999999988888 8999877644 44444 5689
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCC----------cEEee
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG----------MTYAR 427 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~----------ti~~w 427 (1134)
.+++|+|++ +.+++++ .+.+|++.++++.....+|...+ ++|++ ++.+++++.++ ++++|
T Consensus 382 ~~~~~SpDG----~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 382 FAMGVDRNG----KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp EEEEECTTS----SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred eeeEECCCC----CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 999999999 7787665 89999999999888776777765 77888 88888776654 88999
Q ss_pred eeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEcc
Q 001165 428 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 491 (1134)
Q Consensus 428 ~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~ 491 (1134)
++..+. +..+..|...+.+++|||||++|++++.++.. .|+..
T Consensus 458 d~~~g~---------------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 458 DMEGRK---------------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ETTTTE---------------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ECCCCc---------------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 865432 23455677778899999999999999988877 88754
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.86 E-value=5e-20 Score=218.36 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=179.0
Q ss_pred hhcceeEEEEcCC-ceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccc--eEEEeeeCC
Q 001165 66 REGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGL--SVSNIVSDN 142 (1134)
Q Consensus 66 ~~G~~~~v~wSPD-g~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~V~~~s~d~ 142 (1134)
+.+.+.+++|+|+ ++.||+++.+|.|++|++......... ......+.. +.++.. ...++.+++
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---~~~~~~~~~----------~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---SGECQPDLR----------LRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---TCCCCCSEE----------EECCSSCCCCEEECTTS
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---cccCCCcEE----------ecCCCCCeEEEEeCCCC
Confidence 5678899999998 789999999999999999652111000 000001111 111222 234566666
Q ss_pred C-eEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC-CC
Q 001165 143 K-HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL-PM 220 (1134)
Q Consensus 143 ~-~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp-~~ 220 (1134)
. .+++++.+|.|.+|..+........ +. ....+.+|...|.+++|+| ++
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~----------~~-------------------~~~~~~~h~~~v~~v~~~p~~~ 244 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRV----------ID-------------------AKNIFTGHTAVVEDVAWHLLHE 244 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGE----------EE-------------------CSEEECCCSSCEEEEEECSSCT
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCce----------ec-------------------cceeecCCCCCEeeeEEeCCCC
Confidence 6 8888999999998766542111000 00 0012346788999999999 67
Q ss_pred CeEEEEEcCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 221 RLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
+.+++++.||.+.+|++..... ....... .+...+++++|+|+++ ++|+|+.||+|++||+...
T Consensus 245 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~---------- 310 (430)
T 2xyi_A 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVD----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---------- 310 (430)
T ss_dssp TEEEEEETTSEEEEEETTCSCSSSCSEEEE----CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT----------
T ss_pred CEEEEEeCCCeEEEEECCCCCCCcceeEee----cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC----------
Confidence 8999999999999999975421 1111111 2457899999999997 7999999999999999831
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCC--------------CeeEEEeccCCCCce
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSG--------------CRLMSTIRQISLSSI 363 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~--------------~~l~~tl~~h~~~~V 363 (1134)
++.+.++.+ |.++|++++|+|+|. .|++|+.||.|+|||+.. ..++..+.+| ...|
T Consensus 311 ----~~~~~~~~~----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v 381 (430)
T 2xyi_A 311 ----KLKLHSFES----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKI 381 (430)
T ss_dssp ----TSCSEEEEC----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-SSCE
T ss_pred ----CCCeEEeec----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-CCCc
Confidence 344555555 999999999999995 799999999999999976 2556666666 6679
Q ss_pred eeeEEcCCCCCCcc-eEEEcc---eeEEEeCC
Q 001165 364 SSPIVKPNQDCKYE-PLMSGT---SMMQWDEY 391 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~-~l~sgs---~i~~W~~~ 391 (1134)
.+++|+|++ . .+++++ .+++|++.
T Consensus 382 ~~~~~~p~~----~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 382 SDFSWNPNE----PWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEEECSSS----TTEEEEEETTSEEEEEEEC
T ss_pred eEEEECCCC----CCEEEEEECCCCEEEeEcc
Confidence 999999887 5 555544 56666654
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=1.3e-19 Score=203.94 Aligned_cols=176 Identities=11% Similarity=-0.008 Sum_probs=131.3
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECC---CCCEEEEeeeCCeEE
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP---EQQILAVGTRRGVVE 281 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp---dg~llAsG~~dg~V~ 281 (1134)
.+|+..|..++++|+|+.++... . +...++.++|+| ++.+||+|+.|++|+
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~-------------------~-------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk 206 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQF-------------------L-------MPPEETILTFAEVQGMQEALLGTTIMNNIV 206 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEE-------------------E-------CCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred cCCCCcEEEEEECCCCceeeeec-------------------c-------CCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence 45677788888888776654221 1 224566888999 789999999999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE------------EEEECCCcEEEEecCCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF------------AVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L------------asg~~Dg~I~vWdv~~~ 349 (1134)
|||++ +|+.++++.+ ...|...|.+++|||||+++ ++|+.|++|++||..++
T Consensus 207 IWDl~---------------TGk~l~tL~g-~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 207 IWNLK---------------TGQLLKKMHI-DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp EEETT---------------TCCEEEEEEC-CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred EEECC---------------CCcEEEEEcC-CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 99999 8999999875 00123468889999999986 67889999999999999
Q ss_pred eeEEEe-----ccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE---EEEec-CCEEEe
Q 001165 350 RLMSTI-----RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIFSF-GKCCLN 417 (1134)
Q Consensus 350 ~l~~tl-----~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v---~~~s~-~k~l~S 417 (1134)
+++.++ .+| ...+.+..++ + ..+++|+ ++++||+.+++++..+.+|...+ ++|+| ++.++|
T Consensus 271 k~l~v~~~~~p~Gh-~~~~lsg~~s--g----~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 271 LSVGVMLYCLPPGQ-AGRFLEGDVK--D----HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp EEEEEEEECCCTTC-CCCEEEEEEE--T----TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred EEEEEEEeeccCCC-cceeEccccC--C----CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 887765 233 3333333332 3 5677776 89999999999999999887654 57899 999999
Q ss_pred eecCCcEEeeee
Q 001165 418 RGVSGMTYARQV 429 (1134)
Q Consensus 418 ~s~d~ti~~w~l 429 (1134)
|+.|++|++|++
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999985
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=4.7e-19 Score=208.84 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=177.9
Q ss_pred CCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEE-EeeeCCeEEEE
Q 001165 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILA-VGTRRGVVELY 283 (1134)
Q Consensus 205 ~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llA-sG~~dg~V~lw 283 (1134)
.+|...|.+++|+|+++.+++++.||.+.+|+........ .+. .+...+.+++|+|+++.++ +++.||+|++|
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA--TVD----LTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE--EEE----CSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE--EEc----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 3567889999999999999999999999999986433211 111 1346788999999999875 55589999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE--------CCCcEEEEecCCCeeEEEe
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW--------KSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~--------~Dg~I~vWdv~~~~l~~tl 355 (1134)
|+. +++.+..+.. .+.+.+++|+|||+.|++++ .||.|++||+.+++....+
T Consensus 240 d~~---------------~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 240 DRK---------------TKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp ETT---------------TTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred ECC---------------CCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 998 6666655443 35599999999999999988 5889999999988877766
Q ss_pred ccCCCCceeeeEEcCCCCCCcce-EEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeec--------
Q 001165 356 RQISLSSISSPIVKPNQDCKYEP-LMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV-------- 420 (1134)
Q Consensus 356 ~~h~~~~V~sv~~sp~~~~~~~~-l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~-------- 420 (1134)
.. ...+.+++|+|++ +. ++++. .+.+|+..++++..... +...+ +++++ ++.+++++.
T Consensus 300 ~~--~~~~~~~~~~~~g----~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 300 GP--PGNKRHIVSGNTE----NKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp EE--EECEEEEEECSST----TEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred cC--CCCcceEEECCCC----CEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 33 3468899999998 53 45533 89999999988877664 34445 66777 777776665
Q ss_pred -------CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC-CCeE-EEEcc
Q 001165 421 -------SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR 491 (1134)
Q Consensus 421 -------d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~-dG~i-lwd~~ 491 (1134)
||.+++||+..++. ...+.. ...+.+++|+|||++|++++. ||.+ +|++.
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~--------------------~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTV--------------------KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEE--------------------EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cccccccceEEEEEECCCCcE--------------------EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 56899999754432 122223 346899999999999998885 9999 99986
Q ss_pred C
Q 001165 492 Q 492 (1134)
Q Consensus 492 s 492 (1134)
.
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=8.1e-19 Score=206.83 Aligned_cols=276 Identities=13% Similarity=0.049 Sum_probs=193.3
Q ss_pred eEEEeecCeEEEEEcC-CeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcc
Q 001165 24 IIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1134)
Q Consensus 24 iv~fS~dg~llAs~s~-~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~ 102 (1134)
.++|+|++++++++++ ++|++||.... .... .........+.+.+.+++|+|||+.+++++.+|.|++|++......
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVR-LSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTC-CEEE-ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCC-eEee-ecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4789998888888764 57999999743 3222 1111122234567899999999999999999999999998643111
Q ss_pred eecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCcccccc
Q 001165 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~ 181 (1134)
.....+ .......+++++++.++++. .+|.+.+|+.+.. ....
T Consensus 205 ~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~--~~~~------------- 248 (433)
T 3bws_A 205 ATVDLT---------------------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK--LEIR------------- 248 (433)
T ss_dssp EEEECS---------------------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--EEEE-------------
T ss_pred EEEcCC---------------------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--cEEE-------------
Confidence 101000 11112345677788886665 6888887554321 1110
Q ss_pred ccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE--------cCCeEEEEEeccCCccccceeccccc
Q 001165 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY--------SNGQLMSCSVSKKGLKLAEFIKIDKE 253 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~--------sDG~v~l~~~~~~~~~~~~~~~~~~~ 253 (1134)
.......+.+++|+|+++.++++. .||.+++|+...........
T Consensus 249 ----------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~------ 300 (433)
T 3bws_A 249 ----------------------KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG------ 300 (433)
T ss_dssp ----------------------ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE------
T ss_pred ----------------------EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc------
Confidence 011234588999999999998887 48899999986543221111
Q ss_pred CCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE
Q 001165 254 LGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF 332 (1134)
Q Consensus 254 ~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L 332 (1134)
+...+.+++|+|+++ ++++++.|++|++||++ +++....+. +.+.+.+++|+|||++|
T Consensus 301 -~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~---------------~~~~~~~~~-----~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 301 -PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK---------------EKKVQKSIP-----VFDKPNTIALSPDGKYL 359 (433)
T ss_dssp -EEECEEEEEECSSTTEEEEEETTTTEEEEEETT---------------TTEEEEEEE-----CSSSEEEEEECTTSSEE
T ss_pred -CCCCcceEEECCCCCEEEEEecCCCEEEEEECC---------------CCcEEEEec-----CCCCCCeEEEcCCCCEE
Confidence 124678999999997 55777899999999998 566655543 56789999999999999
Q ss_pred EEEEC---------------CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCC
Q 001165 333 AVGWK---------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYG 392 (1134)
Q Consensus 333 asg~~---------------Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~ 392 (1134)
++++. ||.|.+||+.+++.+..+..+ ..+.+++|+|++ +.+++++ ++++|++++
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPTGLDVSPDN----RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEEEEEECTTS----CEEEEEETTTTEEEEEEETT
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCceEEEcCCC----CEEEEEECCCCeEEEEEecC
Confidence 98876 579999999999988888763 468999999998 6665432 788888764
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.84 E-value=5e-20 Score=215.84 Aligned_cols=271 Identities=10% Similarity=0.024 Sum_probs=159.4
Q ss_pred eEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcC--------CceEEEEEeCCCEEEEE
Q 001165 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--------DTKLIAVVTSSLYLHIF 94 (1134)
Q Consensus 24 iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP--------Dg~~Lav~t~dg~l~lw 94 (1134)
...++++++++|+++ |++|+||+.+.+............ .|.+.+.+|+|+| ||++||+++.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~--gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKS--GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTT--SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccC--CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 355678888999987 679999999744322212222221 2567899999998 99999999999999999
Q ss_pred EEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCC-eEEEEecCCcEEEEecCCccccceeccccC
Q 001165 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK-HMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1134)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~-~llv~t~dg~v~~~~wd~~~~~~~~~~~~~ 173 (1134)
|+...........+.. .....++.|++. .+++++.||+|++|++........ ....+
T Consensus 172 d~~~~~~~~~~~~~~~---------------------~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~-~~~~~ 229 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSS---------------------PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE-NSQTE 229 (393)
T ss_dssp EEETTEEEEEEEECSS---------------------CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred ECCCCceeeeecCCCC---------------------CcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc-ccccC
Confidence 9975422111111110 011234555553 688899999999876643321110 00000
Q ss_pred CCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEc-CCCCeEEEEEcCCeEEEEEeccCCccc-ccee---
Q 001165 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC-LPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFI--- 248 (1134)
Q Consensus 174 ~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs-p~~~~la~~~sDG~v~l~~~~~~~~~~-~~~~--- 248 (1134)
....... +.... ..........++...+.++.|+ |+++.+++++.|+++.+|++....... ...+
T Consensus 230 ~~~~~~~---~s~~~-------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~ 299 (393)
T 4gq1_A 230 LVKNPWL---LTLNT-------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK 299 (393)
T ss_dssp -CSCCCS---EEEES-------GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred CcccceE---Eeccc-------ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc
Confidence 0000000 00000 0000111234677788899886 899999999999999999985422110 0000
Q ss_pred -ccccc-------CCCCCeEEEEECC--CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCc
Q 001165 249 -KIDKE-------LGSGDAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG 318 (1134)
Q Consensus 249 -~~~~~-------~~~~~~~~va~sp--dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g 318 (1134)
....+ .......++.++| ++.++++|+.||+|++||+. +++....+.+ |.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~---------------~~~~~~~~~~----~~~ 360 (393)
T 4gq1_A 300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY---------------EKDSNSIPIQ----LGM 360 (393)
T ss_dssp ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT---------------CTTCCEEEEE----CSS
T ss_pred cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC---------------CCcEEEEecC----CCC
Confidence 00000 0011222334444 45577888999999999998 5655555555 889
Q ss_pred CeEEEEECCCCCEEEEEECCCcEEEEecCC
Q 001165 319 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 319 ~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
+|.+|+|||||++||++++| ++.+|.+.+
T Consensus 361 ~V~svafspdG~~LA~as~~-Gv~lvrL~g 389 (393)
T 4gq1_A 361 PIVDFCWHQDGSHLAIATEG-SVLLTRLMG 389 (393)
T ss_dssp CEEEEEECTTSSEEEEEESS-EEEEEEEGG
T ss_pred cEEEEEEcCCCCEEEEEeCC-CeEEEEEeC
Confidence 99999999999999999875 677887654
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=3.7e-18 Score=225.12 Aligned_cols=285 Identities=12% Similarity=0.077 Sum_probs=195.3
Q ss_pred CcccEEEEEEc-CCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCC-CeEEEEECCCCCEEEEeeeCCeEE-EE
Q 001165 207 ISSAIIWLELC-LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG-DAVCASIAPEQQILAVGTRRGVVE-LY 283 (1134)
Q Consensus 207 ~~~~V~~i~fs-p~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~va~spdg~llAsG~~dg~V~-lw 283 (1134)
+...+.+++|| |+|+.++++. +|.+++|+........ +. .+.. .+.+++|+ +|+.+++++.++.+. +|
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~ 364 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---VP----EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIY 364 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE---CS----CCSCEEEEEECSS-SEEEEEEEETTEEEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE---cc----CCCcceEEeeeEc-CCCeEEEEECCCceEEEE
Confidence 44568899999 9999998887 8899998775433221 11 1224 67899999 999999999888888 88
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
+++ +++.. .+.+ |...+.+++|||||+.||+++.++.|++||+.++.+...+.+| ...+
T Consensus 365 d~~---------------~~~~~-~l~~----~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v 423 (1045)
T 1k32_A 365 DYR---------------TGKAE-KFEE----NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMI 423 (1045)
T ss_dssp ETT---------------TCCEE-ECCC----CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCC
T ss_pred ECC---------------CCCce-EecC----CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCc
Confidence 887 33322 2223 8889999999999999999999999999999988877776565 6678
Q ss_pred eeeEEcCCCCCCcceEEEcc-------------eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEee
Q 001165 364 SSPIVKPNQDCKYEPLMSGT-------------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYAR 427 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs-------------~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w 427 (1134)
.+++|+||+ +.++.++ .+.+|+..+++ .....+|...+ ..|++ ++.++.++.++....|
T Consensus 424 ~~~~~SpDG----~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 424 TDFTISDNS----RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp CCEEECTTS----CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred cceEECCCC----CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 999999999 7665432 68899999988 44455665555 56777 8999988888888888
Q ss_pred eeeeCC------CeEEEeec--CCCcc--------------cccccc-ccceeeccCCCceEEEEEcCCCCEEEE-----
Q 001165 428 QVIYGE------DRLLVVQS--EDTDE--------------LKILHL-NLPVSYISQNWPVQHVAASKDGMFLAV----- 479 (1134)
Q Consensus 428 ~l~~~~------~~l~l~~g--~~~~~--------------~~w~~~-~~~~~~~~h~~~V~~va~SpdG~~LAs----- 479 (1134)
+..... .+++.+.- ..... +.+... .....+..|...+..+++||||+++++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g 578 (1045)
T 1k32_A 499 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 578 (1045)
T ss_dssp CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred chhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccC
Confidence 743221 11121111 11111 111111 112234456778999999999998886
Q ss_pred --------EeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 480 --------AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 480 --------gg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.+..+.+ +||+.+++.+.+. -.+..+.+. ++.++++ . .+ .+++|+..
T Consensus 579 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~--~--~~--~i~~~d~~ 636 (1045)
T 1k32_A 579 EFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVR--K--DD--GKIYTFPL 636 (1045)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEE--E--TT--SCEEEEES
T ss_pred cccccccccCCCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEE--c--CC--cEEEEeCc
Confidence 1234567 8899888766543 123455665 4566655 1 11 58888774
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.83 E-value=2e-18 Score=200.53 Aligned_cols=232 Identities=9% Similarity=0.031 Sum_probs=176.5
Q ss_pred ccEEEEEEcCCCCeE-EEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE-eeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLL-FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV-GTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~l-a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs-G~~dg~V~lwd~~ 286 (1134)
..+.+++|+|+++.+ +++..||++.+|+........ .+ .....+.+++|+|+++.|++ ++.+++|++||+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~--~~-----~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA--TV-----PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--EE-----ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE--EE-----ECCCCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 347899999999976 455589999999986433211 11 12247899999999997755 4567999999998
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE-EEEECCCcEEEEecCCCeeEEEeccCCCCceee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L-asg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
+++.+..+.. ...+.+++|+|||+.| ++++.|+.|++||+.+++....+..+ ..+.+
T Consensus 105 ---------------~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~ 162 (391)
T 1l0q_A 105 ---------------SNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKG 162 (391)
T ss_dssp ---------------TTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEE
T ss_pred ---------------CCeEEEEEeC-----CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--CCcce
Confidence 6666666543 3568999999999977 68888999999999999888888764 35799
Q ss_pred eEEcCCCCCCcceE-EEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeee---cCCcEEeeeeeeCCCe
Q 001165 366 PIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG---VSGMTYARQVIYGEDR 435 (1134)
Q Consensus 366 v~~sp~~~~~~~~l-~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s---~d~ti~~w~l~~~~~~ 435 (1134)
++|+|++ +.+ +++. .+.+||..++++...... ...+ +++++ ++.+++++ .++.+++||+..+..
T Consensus 163 ~~~~~dg----~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~- 236 (391)
T 1l0q_A 163 IAVTPDG----TKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI- 236 (391)
T ss_dssp EEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-
T ss_pred EEECCCC----CEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-
Confidence 9999998 555 4543 899999999988777654 3344 56777 77787777 689999999755432
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEE-EEEeCCCeE-EEEccCCcE
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL-AVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~L-Asgg~dG~i-lwd~~sg~W 495 (1134)
...+..|. .+.+++|+|||++| ++++.||.+ +||+.+++.
T Consensus 237 -------------------~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 237 -------------------TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp -------------------EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred -------------------EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 12233343 46899999999988 566789999 999998753
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=7.4e-18 Score=213.47 Aligned_cols=345 Identities=11% Similarity=0.042 Sum_probs=209.7
Q ss_pred ceeEEEEcCCceEEEEEeC-CC-----EEEEEEEEecCcceecCC--CCCCCcceeeEEEe-eceeecccc-ccceEEEe
Q 001165 69 ENLQAVWSPDTKLIAVVTS-SL-----YLHIFKVQITEKSIQIGG--KQPSGLFFIKISLV-LNEQLPFAE-KGLSVSNI 138 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~-dg-----~l~lw~l~~~~~~~~~~~--~~~~~~~~~s~~~~-~~~~~~~~~-~~~~V~~~ 138 (1134)
.+..++|||||++||+++. +| +|.+|+++.+........ ..+.+..+. ..-. ...+....+ ....-.++
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLS-DEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhccccccccc-chhhhhhhhhhhccccCcceeEE
Confidence 4678999999999999998 88 899999876432211111 110000000 0000 000000000 01123478
Q ss_pred eeCCCeEEEEecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC
Q 001165 139 VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (1134)
Q Consensus 139 s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp 218 (1134)
++||+.+++++. +.+++|+.++...... ..+..+...+.+++|||
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~----------------------------------~~l~~~~~~~~~~~~SP 161 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAV----------------------------------RQLTHGEGFATDAKLSP 161 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSC----------------------------------CBCCCSSSCEEEEEECT
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceE----------------------------------EEcccCCcccccccCCC
Confidence 899999888875 8887655443200011 01234456789999999
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccccceeccc-------ccC---CCCCeEEEEECCCCCEEEEeeeCC----------
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-------KEL---GSGDAVCASIAPEQQILAVGTRRG---------- 278 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~va~spdg~llAsG~~dg---------- 278 (1134)
+|+.++++. ++.+++|+..+............ .|. ....+.+++|||||+.||+++.|+
T Consensus 162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 999999886 57899998865332211100000 000 001246799999999999998776
Q ss_pred -----------------------eEEEEeccccccceeeeeeeccCc-ceEEEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 279 -----------------------VVELYDLAESASLIRTVSLYDWGM-REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 279 -----------------------~V~lwd~~~~~~~~~~l~l~~~~~-~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
.|.+||++ + ++..... ....|.+.+.+++| |||+.|++
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~---------------~~~~~~~~~--~~~~~~~~~~~~~~-pDg~~l~~ 302 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPA---------------EQAQTQWID--LGKEQDIYLARVNW-RDPQHLSF 302 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSS---------------TTCCCEEEC--CCSCSSEEEEEEEE-EETTEEEE
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECC---------------CCCceEEec--CCCCcceEEEEEEe-CCCCEEEE
Confidence 67777776 3 3322211 11137788999999 99999998
Q ss_pred EEC-----CCcEEEEecCCCeeEEEeccCCCC---ceeeeEEcCCCCCCcceEEEcc---eeEEEe--CCCceEEEEecC
Q 001165 335 GWK-----SRGLTVWSVSGCRLMSTIRQISLS---SISSPIVKPNQDCKYEPLMSGT---SMMQWD--EYGYRLYAIEEG 401 (1134)
Q Consensus 335 g~~-----Dg~I~vWdv~~~~l~~tl~~h~~~---~V~sv~~sp~~~~~~~~l~sgs---~i~~W~--~~~~~l~~~~~~ 401 (1134)
++. ++.|.+||+.++.+...+..+... .+.+++|+|++ +.++++. ...+|. ..+. ......
T Consensus 303 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~--~~~l~~ 376 (741)
T 2ecf_A 303 QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK--AAALTH 376 (741)
T ss_dssp EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC--EEESCC
T ss_pred EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC--eeeeee
Confidence 764 567999999988877666654322 45689999998 6666544 445554 4444 555556
Q ss_pred CCccE---EEEec-CCEEE-eeecCC--cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCC
Q 001165 402 SSERV---LIFSF-GKCCL-NRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 474 (1134)
Q Consensus 402 h~~~v---~~~s~-~k~l~-S~s~d~--ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG 474 (1134)
|...+ ..+++ ++.++ +++.++ ++++|++...... +..+.. ...+.+++|||||
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~-------------------~~~l~~-~~~~~~~~~spdg 436 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ-------------------PQRLSK-APGMHSASFARNA 436 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC-------------------CEECCC-SCSEEEEEECTTS
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC-------------------eeeccc-CCCceEEEECCCC
Confidence 66555 24788 76664 555555 8899987542221 222333 4567899999999
Q ss_pred CEEEEEeCC----CeE-EEEccCCc
Q 001165 475 MFLAVAGLH----GLI-LYDIRQKK 494 (1134)
Q Consensus 475 ~~LAsgg~d----G~i-lwd~~sg~ 494 (1134)
++|+....+ +.+ +|+..++.
T Consensus 437 ~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 437 SVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp SEEEEEEEETTEEEEEEEEETTSCE
T ss_pred CEEEEEecCCCCCCeEEEEEcCCCe
Confidence 999876543 345 66665543
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.81 E-value=7.9e-18 Score=205.61 Aligned_cols=333 Identities=10% Similarity=-0.027 Sum_probs=220.4
Q ss_pred EEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCc
Q 001165 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (1134)
Q Consensus 74 ~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~ 153 (1134)
+|+||++.+++++.+++|.+||..... .+ ..+ ..+ .......+++||+.+++++.+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~-~~------------~~i--------~~g-~~~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK-IV------------KVI--------DTG-YAVHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC-EE------------EEE--------ECS-TTEEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce-EE------------EEE--------ecC-cccceEEECCCCCEEEEECCCCe
Confidence 489999999999999999999975431 11 111 011 11234567889999999999999
Q ss_pred EEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC----CCCeEEEEE-c
Q 001165 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL----PMRLLFVLY-S 228 (1134)
Q Consensus 154 v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp----~~~~la~~~-s 228 (1134)
|.+|+.+..+.... .. + .....+..++|+| +++.++++. .
T Consensus 202 V~v~D~~~~t~~~~------------~~----------------------i-~~g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 202 IDMIDLWAKEPTKV------------AE----------------------I-KIGIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp EEEEETTSSSCEEE------------EE----------------------E-ECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred EEEEECcCCCCcEE------------EE----------------------E-ecCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 98876531221111 00 1 1234578999999 999988887 4
Q ss_pred CCeEEEEEeccCCccccceecc-----cccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCc
Q 001165 229 NGQLMSCSVSKKGLKLAEFIKI-----DKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGM 302 (1134)
Q Consensus 229 DG~v~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~ 302 (1134)
++++.+|+.........-.... ..+.....+.+++++|+++ ++++...+|+|.+||+.+.....
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~---------- 316 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---------- 316 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE----------
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce----------
Confidence 8999999875443221100000 0000123678999999765 56677789999999998322110
Q ss_pred ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecCCCeeEEEeccC---CCCceeeeEEcCCCCCCcce
Q 001165 303 REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEP 378 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~~~~l~~tl~~h---~~~~V~sv~~sp~~~~~~~~ 378 (1134)
+.++ . +...+.+++|+|||+++++++ .+++|++||+.++++..++... |......+ ++|++. ..
T Consensus 317 ---~~~i-~----~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g---~~ 384 (543)
T 1nir_A 317 ---VTSI-G----AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYG---PV 384 (543)
T ss_dssp ---EEEE-E----CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTE---EE
T ss_pred ---eEEe-c----cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCc---cE
Confidence 0111 1 445678899999999876654 5799999999999998888642 12112222 466631 55
Q ss_pred EEEcc----eeEEEeCCC-------ceEEEEecCCCccE--EEEec-CCEEEeee-------cCCcEEeeeeeeCCCeEE
Q 001165 379 LMSGT----SMMQWDEYG-------YRLYAIEEGSSERV--LIFSF-GKCCLNRG-------VSGMTYARQVIYGEDRLL 437 (1134)
Q Consensus 379 l~sgs----~i~~W~~~~-------~~l~~~~~~h~~~v--~~~s~-~k~l~S~s-------~d~ti~~w~l~~~~~~l~ 437 (1134)
++++. ++.+|+..+ .+++....+|.... +.++| ++.+.+++ .+++|.+||+.+++....
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 66642 899999988 88888888876554 77888 88888876 377999999876654100
Q ss_pred EeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe-----CCCeE-EEEccCCcEE
Q 001165 438 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-----LHGLI-LYDIRQKKWR 496 (1134)
Q Consensus 438 l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg-----~dG~i-lwd~~sg~Wk 496 (1134)
.+. .-.| ..+..+...+.+++|+|||+.|+++. .++.| +||..+++-+
T Consensus 465 ~~~-----v~~~------~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 465 VLP-----IAEW------ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp EEC-----HHHH------HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred Eee-----chhh------cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 000 0000 01124566799999999999999773 47899 9999998643
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.80 E-value=6e-18 Score=199.79 Aligned_cols=215 Identities=11% Similarity=0.049 Sum_probs=157.4
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCC---eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEE-EeeeCCe--
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNG---QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILA-VGTRRGV-- 279 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG---~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llA-sG~~dg~-- 279 (1134)
++...+.+++|+|+++.+++++.++ .+++|++....... +. .+...+.+++|||||+.|| +++.+|.
T Consensus 176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---l~----~~~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---VA----SFPRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---EE----CCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---ee----cCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence 4567799999999999999999875 89999986543321 11 1235688999999999888 6666554
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC-C--cEEEEecCCCeeEEEec
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D-g--~I~vWdv~~~~l~~tl~ 356 (1134)
|.+||+. +++. ..+.+ |.+.+.+++|||||+.|++++.+ + .|.+||+.++.. ..+.
T Consensus 249 i~~~d~~---------------~~~~-~~l~~----~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~ 307 (415)
T 2hqs_A 249 LYVMDLA---------------SGQI-RQVTD----GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRIT 307 (415)
T ss_dssp EEEEETT---------------TCCE-EECCC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECC
T ss_pred EEEEECC---------------CCCE-EeCcC----CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEe
Confidence 8899987 4443 33433 88899999999999999988864 4 577779887764 3344
Q ss_pred cCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCC-ccEEEEec-CCEEEeeecCC---cEE
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GKCCLNRGVSG---MTY 425 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~-~~v~~~s~-~k~l~S~s~d~---ti~ 425 (1134)
.+ ...+.+++|+|++ +.++.++ .+.+|++.++++.... .+. ..-..+++ ++.+++++.++ .+.
T Consensus 308 ~~-~~~~~~~~~spdG----~~l~~~~~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 308 WE-GSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGGVQVLS-STFLDETPSLAPNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp CS-SSEEEEEEECTTS----SEEEEEEECSSCEEEEEEETTTCCEEECC-CSSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred cC-CCcccCeEECCCC----CEEEEEECcCCceEEEEEECCCCCEEEec-CCCCcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence 44 4578899999999 7666543 6889999998875443 333 22267777 88888887776 677
Q ss_pred eeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCC
Q 001165 426 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM 475 (1134)
Q Consensus 426 ~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~ 475 (1134)
+|++. +.. ...+.+|++.|++++|||.-.
T Consensus 382 ~~d~~-g~~--------------------~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 382 LVSTD-GRF--------------------KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETT-SCC--------------------EEECCCSSSEEEEEEECCCCC
T ss_pred EEECC-CCc--------------------EEEeeCCCCCCcCCccccccc
Confidence 88754 222 345668889999999999643
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=5.8e-17 Score=197.95 Aligned_cols=331 Identities=8% Similarity=0.020 Sum_probs=214.8
Q ss_pred eeEEEeecCeEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEE--Eec
Q 001165 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV--QIT 99 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l--~~~ 99 (1134)
+..+|+|+++++++.+ +++|.+||... ...+....- ++ .+..++|||||++|++++.+++|.+||+ .+.
T Consensus 141 ~~~~~~p~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~------g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 141 QLNDLDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDT------GY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP 212 (543)
T ss_dssp CCSCCCGGGEEEEEEGGGTEEEEEETTT-CCEEEEEEC------ST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred cccccCCCCEEEEEEcCCCeEEEEECCC-ceEEEEEec------Cc-ccceEEECCCCCEEEEECCCCeEEEEECcCCCC
Confidence 3435899999988876 56999999973 333333321 12 2568999999999999999999999999 321
Q ss_pred CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeee----CCCeEEEEec-CCcEEEEecCCccccceeccccCC
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSN 174 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~----d~~~llv~t~-dg~v~~~~wd~~~~~~~~~~~~~~ 174 (1134)
+. +..+ .. +....-.+|++ ||+.++++.. +++|.+| |..+.....
T Consensus 213 -~~------------~~~i--------~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~--D~~t~~~~~------ 262 (543)
T 1nir_A 213 -TK------------VAEI--------KI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM--DGETLEPKQ------ 262 (543)
T ss_dssp -EE------------EEEE--------EC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE--ETTTCCEEE------
T ss_pred -cE------------EEEE--------ec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEE--eccccccce------
Confidence 10 1111 11 11112346788 8999999885 7888765 444322221
Q ss_pred CccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeE-EEEEcCCeEEEEEeccCCccccceeccccc
Q 001165 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL-FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE 253 (1134)
Q Consensus 175 ~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~l-a~~~sDG~v~l~~~~~~~~~~~~~~~~~~~ 253 (1134)
.++.. + .. ...........+.++.++|+++.+ +....+|++.+|+...........+.
T Consensus 263 ------~i~~~--g------~~---~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---- 321 (543)
T 1nir_A 263 ------IVSTR--G------MT---VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---- 321 (543)
T ss_dssp ------EEECC--E------EC---SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE----
T ss_pred ------eeccc--C------cc---cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec----
Confidence 11100 0 00 000000123478899999987654 45567899999998654322111221
Q ss_pred CCCCCeEEEEECCCCCEEEE-eeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC-CCE
Q 001165 254 LGSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD-NSA 331 (1134)
Q Consensus 254 ~~~~~~~~va~spdg~llAs-G~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD-G~~ 331 (1134)
....+..++|+|+|+++.+ +..+++|.+||.. +++++.++......|.+....+ ++|+ |..
T Consensus 322 -~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~---------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~ 384 (543)
T 1nir_A 322 -AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK---------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPV 384 (543)
T ss_dssp -CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT---------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEE
T ss_pred -cCcCccCceECCCCCEEEEEecCCCeEEEEECC---------------CCeEEEeeccCCCCCCCCCccc-CCCCCccE
Confidence 1234557899999997655 4568999999999 6776666553222366554444 5787 667
Q ss_pred EEEEE-CCCcEEEEecCC-------CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----------eeEEEeCCCc
Q 001165 332 FAVGW-KSRGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----------SMMQWDEYGY 393 (1134)
Q Consensus 332 Lasg~-~Dg~I~vWdv~~-------~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----------~i~~W~~~~~ 393 (1134)
++++. .|++|+|||+.+ .+++.++.+| ...+..++++|++ +.+.++. ++.+||.+++
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g~~~~~v~~~pdg----~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKS----SHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTC----CEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-CCCceEEEcCCCC----CcEEEecCCCCCcccCceEEEEECCCC
Confidence 77775 579999999987 7889999987 4568889999998 6666543 8999999887
Q ss_pred eEE-EEe--------cCCCccE--EEEec-CCEEEee-----ecCCcEEeeeeeeCCC
Q 001165 394 RLY-AIE--------EGSSERV--LIFSF-GKCCLNR-----GVSGMTYARQVIYGED 434 (1134)
Q Consensus 394 ~l~-~~~--------~~h~~~v--~~~s~-~k~l~S~-----s~d~ti~~w~l~~~~~ 434 (1134)
+.. ... ..+..++ ..|++ |+.+..+ +.+++|.+||..+++.
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 654 332 2345566 45555 8877754 2479999999765543
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.78 E-value=4.8e-18 Score=214.45 Aligned_cols=323 Identities=11% Similarity=0.048 Sum_probs=195.1
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~ 148 (1134)
....++|||||+++++ +.||+|++||+.++........+..... ...-.+|++||+.++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~------------------~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESL------------------RAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTT------------------TCSEEEECTTSSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccccc------------------ccceEEECCCCCEEEEE
Confidence 3568999999997776 7899999999976543222221111000 01234678888888888
Q ss_pred ecC---------CcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC
Q 001165 149 LSD---------GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1134)
Q Consensus 149 t~d---------g~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~ 219 (1134)
+.+ +.+++|+.++. ....+ . ....+...+..++|||+
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~--~~~~l----------~----------------------~~~~~~~~~~~~~~SPd 124 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHG--DPQSL----------D----------------------PPEVSNAKLQYAGWGPK 124 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSC--CCEEC----------C----------------------CTTCCSCCCSBCCBCSS
T ss_pred ecCccceeecceeeEEEEECCCC--ceEec----------c----------------------CCccccccccccEECCC
Confidence 764 45555433322 11100 0 01123344677899999
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccc--------cC----CCCCeEEEEECCCCCEEEEeeeCC---------
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--------EL----GSGDAVCASIAPEQQILAVGTRRG--------- 278 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~va~spdg~llAsG~~dg--------- 278 (1134)
|+.+++++. +.+++|+..+............. |. -...+.+++|||||+.||+++.|+
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 999999875 88999988654332211100000 00 002347899999999999988653
Q ss_pred -------------------------eEEEEeccccccceeeeeeeccCcceEEEEeecc--cCCCCcCeEEEEECCCCCE
Q 001165 279 -------------------------VVELYDLAESASLIRTVSLYDWGMREVYYTFCRY--SMDDTGPVSCIAWTPDNSA 331 (1134)
Q Consensus 279 -------------------------~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~--~~~h~g~V~~l~fSPDG~~ 331 (1134)
+|++||+. +++....+... ...|.+.|.+++|||||+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN---------------GPTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS---------------SSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECC---------------CCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 55566655 33322332220 0013678999999999999
Q ss_pred EEEEECC----CcEEEEecCCCeeEEEeccCCCCcee----eeEEcCCCCCCcceEEEc-c----------eeEEEe-CC
Q 001165 332 FAVGWKS----RGLTVWSVSGCRLMSTIRQISLSSIS----SPIVKPNQDCKYEPLMSG-T----------SMMQWD-EY 391 (1134)
Q Consensus 332 Lasg~~D----g~I~vWdv~~~~l~~tl~~h~~~~V~----sv~~sp~~~~~~~~l~sg-s----------~i~~W~-~~ 391 (1134)
|++...+ +.|.+||+.++++...+..++...+. +++|+|++ +.++.. + .+.+|+ ..
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~d~~~ 344 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVSSSQP 344 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEEeccC
Confidence 9777533 57999999988876665543233343 88999998 654422 1 366777 45
Q ss_pred Cce---EEEEecCCCcc--EEEEec-CCEEEeeecC---CcEEeeeeeeCCCeEEEeecCCCccccccccccceeecc--
Q 001165 392 GYR---LYAIEEGSSER--VLIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-- 460 (1134)
Q Consensus 392 ~~~---l~~~~~~h~~~--v~~~s~-~k~l~S~s~d---~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~-- 460 (1134)
+++ ......++... +..+++ ++.++..+.+ +++++|++...... .+..+..
T Consensus 345 ~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~l~~~~ 406 (723)
T 1xfd_A 345 NSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF------------------NRQCLSCDL 406 (723)
T ss_dssp CSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC------------------CCBCSSTTS
T ss_pred CCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC------------------Ccceecccc
Confidence 554 32222232222 256888 8887655444 78899987543210 0111221
Q ss_pred -CCCceEEEEEcCCCCEEEEEeC
Q 001165 461 -QNWPVQHVAASKDGMFLAVAGL 482 (1134)
Q Consensus 461 -h~~~V~~va~SpdG~~LAsgg~ 482 (1134)
|...+..++|||||++++....
T Consensus 407 ~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 407 VENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SSSCCCCEEEECTTSSEEEEECC
T ss_pred cCCCCeEEEEECCCCCEEEEEcc
Confidence 5566889999999999987643
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=6.8e-17 Score=190.72 Aligned_cols=237 Identities=14% Similarity=0.061 Sum_probs=170.1
Q ss_pred CCeEEEEEcC------CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC---eEEEEecccccc
Q 001165 220 MRLLFVLYSN------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG---VVELYDLAESAS 290 (1134)
Q Consensus 220 ~~~la~~~sD------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg---~V~lwd~~~~~~ 290 (1134)
+..++.++.+ +++++|+..+........ +...+.+++|||+|+.||+++.++ +|++||+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~-------~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~---- 211 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA---- 211 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE-------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC-------CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC----
Confidence 4556666554 789999986543322222 236789999999999999999885 99999998
Q ss_pred ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE-EEECCCc--EEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA-VGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La-sg~~Dg~--I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
+++.. .+.+ |.+.+.+++|||||+.|| +++.|+. |.+||+.++++ ..+..| ...+.+++
T Consensus 212 -----------tg~~~-~l~~----~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~ 273 (415)
T 2hqs_A 212 -----------NGAVR-QVAS----FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPT 273 (415)
T ss_dssp -----------TCCEE-EEEC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEE
T ss_pred -----------CCcEE-Eeec----CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceE
Confidence 55543 3444 788999999999999888 6666655 99999988765 456555 56799999
Q ss_pred EcCCCCCCcceEEEcc------eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecC---CcEEeeeeeeCCCe
Q 001165 368 VKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVS---GMTYARQVIYGEDR 435 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs------~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d---~ti~~w~l~~~~~~ 435 (1134)
|+|++ +.++.++ .+.+|+..++++... ..+...+ .++++ ++.++.++.+ ..+.+|++..+..
T Consensus 274 ~spdg----~~l~~~s~~~g~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~- 347 (415)
T 2hqs_A 274 WFPDS----QNLAFTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV- 347 (415)
T ss_dssp ECTTS----SEEEEEECTTSSCEEEEEETTSSCCEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred ECCCC----CEEEEEECCCCCcEEEEEECCCCCEEEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-
Confidence 99998 6665433 577789988775433 3344455 66777 8888877764 5788888754432
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC---eE-EEEccCCcEEEeCCccceeeeEEEE
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKG 511 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG---~i-lwd~~sg~Wk~F~~~~~e~~~~v~g 511 (1134)
..+..+. .+.+++|||||++|++++.++ .+ +||+.++..+.+... .-.+..
T Consensus 348 --------------------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~----~~~v~~ 402 (415)
T 2hqs_A 348 --------------------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT----DGQVKF 402 (415)
T ss_dssp --------------------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS----SSEEEE
T ss_pred --------------------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC----CCCCcC
Confidence 1233343 788999999999999998877 67 999988766554332 134667
Q ss_pred EEeeC
Q 001165 512 LLWLG 516 (1134)
Q Consensus 512 l~W~~ 516 (1134)
++|.+
T Consensus 403 ~~~~~ 407 (415)
T 2hqs_A 403 PAWSP 407 (415)
T ss_dssp EEECC
T ss_pred Ccccc
Confidence 77753
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=5e-16 Score=196.67 Aligned_cols=231 Identities=14% Similarity=0.129 Sum_probs=165.7
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccC---CccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK---GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
..|.+++|||||+.+++++. +++++|++.+. ...... .+...+.+++|||||+.||+++ +++|.+||+
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-------~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-------HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-------CSSSCEEEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-------cCCcccccccCCCCCCEEEEEe-CCcEEEEec
Confidence 34778999999999998876 99999998765 322211 1235688999999999999987 569999999
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCc----------------CeEEEEECCCCCEEEEEECCC----------
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTG----------------PVSCIAWTPDNSAFAVGWKSR---------- 339 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g----------------~V~~l~fSPDG~~Lasg~~Dg---------- 339 (1134)
+ +++....... +.. .+.+++|||||+.|++++.|+
T Consensus 180 ~---------------~g~~~~~~~~----~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 180 A---------------SGRQMQLTAD----GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp T---------------TTEEEECCCC----CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred C---------------CCCEEEeccC----CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 8 3333222111 222 257899999999999998776
Q ss_pred -----------------------cEEEEecCC-CeeEEEecc-CCCCceeeeEEcCCCCCCcceEEEcc--------eeE
Q 001165 340 -----------------------GLTVWSVSG-CRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 386 (1134)
Q Consensus 340 -----------------------~I~vWdv~~-~~l~~tl~~-h~~~~V~sv~~sp~~~~~~~~l~sgs--------~i~ 386 (1134)
.|.+||+.+ +........ .+...+.+++| ||+ +.++.+. .+.
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~ 315 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLV 315 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEE
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEE
Confidence 788999988 775544322 22567899999 999 6666322 688
Q ss_pred EEeCCCceEEEEecCCCc----c--EEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeec
Q 001165 387 QWDEYGYRLYAIEEGSSE----R--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 459 (1134)
Q Consensus 387 ~W~~~~~~l~~~~~~h~~----~--v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~ 459 (1134)
+||+.++++......+.. . -..|++ ++.+++++.|++.++|.+..... +..+.
T Consensus 316 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--------------------~~~l~ 375 (741)
T 2ecf_A 316 EVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--------------------AAALT 375 (741)
T ss_dssp EEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--------------------EEESC
T ss_pred EEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC--------------------eeeee
Confidence 999999887766554432 1 267788 88888888999999987642221 23455
Q ss_pred cCCCceEEE-EEcCCCCEEEEE-eCCC--eE-EEEccC
Q 001165 460 SQNWPVQHV-AASKDGMFLAVA-GLHG--LI-LYDIRQ 492 (1134)
Q Consensus 460 ~h~~~V~~v-a~SpdG~~LAsg-g~dG--~i-lwd~~s 492 (1134)
.|.+.|..+ +|||||+.|+.. +.++ .+ +|++..
T Consensus 376 ~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 376 HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 677888887 599999988654 4454 67 998864
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.74 E-value=6e-16 Score=194.88 Aligned_cols=244 Identities=12% Similarity=0.041 Sum_probs=156.8
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEecc-----CCccccceecccc--------cCCCCCeEEEEECCCCCEEEEee
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-----KGLKLAEFIKIDK--------ELGSGDAVCASIAPEQQILAVGT 275 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~-----~~~~~~~~~~~~~--------~~~~~~~~~va~spdg~llAsG~ 275 (1134)
..+.+++|||+|+.++++ .|+.+++|++.. ............. ......+.+++|||||+.||+++
T Consensus 121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence 345668999999999985 789999999875 3322111000000 00011247899999999999987
Q ss_pred ---------------------------------eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEE
Q 001165 276 ---------------------------------RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSC 322 (1134)
Q Consensus 276 ---------------------------------~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~ 322 (1134)
.+++|.+||++ +++...... ...|...|.+
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~---------------~~~~~~~~~--~~~~~~~~~~ 262 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA---------------TGKTVYLQT--GEPKEKFLTN 262 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT---------------TTEEEECCC--CSCTTCEEEE
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC---------------CCceEeecc--CCCCceeEee
Confidence 34678888887 444322211 1136778999
Q ss_pred EEECCCCCEEEEEECCC-----cEEEEecCCC-eeEEEeccCCCC---ceeeeEEcC--CCCCCcceEEEcc---eeEEE
Q 001165 323 IAWTPDNSAFAVGWKSR-----GLTVWSVSGC-RLMSTIRQISLS---SISSPIVKP--NQDCKYEPLMSGT---SMMQW 388 (1134)
Q Consensus 323 l~fSPDG~~Lasg~~Dg-----~I~vWdv~~~-~l~~tl~~h~~~---~V~sv~~sp--~~~~~~~~l~sgs---~i~~W 388 (1134)
++|||||+.|++++.|+ .|.+||+.++ .........+.. .+.+++|+| ++ +.++++. .+.+|
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg----~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN----QFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS----EEEEEECTTSSCEEE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC----EEEEEEccCCccEEE
Confidence 99999999999988776 8999999888 433323222122 246789999 88 6676654 56777
Q ss_pred eCC-CceEEEEecCCCccE---EEEec-CCEEEeee-cCC--cEEeeeeeeCCCeEEEeecCCCccccccccccceeecc
Q 001165 389 DEY-GYRLYAIEEGSSERV---LIFSF-GKCCLNRG-VSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 460 (1134)
Q Consensus 389 ~~~-~~~l~~~~~~h~~~v---~~~s~-~k~l~S~s-~d~--ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~ 460 (1134)
... +++.+....++...+ ..+++ ++.++..+ .++ ..++|.+...... +. ...
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------------------~~-~l~ 398 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------------------TK-DLT 398 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------------------CE-ESC
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------------------ce-ecc
Confidence 654 445455555555444 46777 77665444 443 3455544321110 11 223
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC----CeE-EEEccCCc
Q 001165 461 QNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKK 494 (1134)
Q Consensus 461 h~~~V~~va~SpdG~~LAsgg~d----G~i-lwd~~sg~ 494 (1134)
|...+.+++|||||++++.++.+ +.+ +||+.+++
T Consensus 399 ~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 399 PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 55678899999999999877544 457 99988775
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.72 E-value=6.3e-15 Score=166.76 Aligned_cols=285 Identities=13% Similarity=0.109 Sum_probs=173.1
Q ss_pred CeEEEEE-cCCeEEEeecCCcc--eeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC-CEEEEEEEEecCcceecC
Q 001165 31 NGLLLIA-SPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-LYLHIFKVQITEKSIQIG 106 (1134)
Q Consensus 31 g~llAs~-s~~~l~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d-g~l~lw~l~~~~~~~~~~ 106 (1134)
..++++. .+++|++|+.+..+ ..+... .+.+....++|+|||++|++++.+ +.|.+|+++........
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~- 76 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF- 76 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-
Confidence 3455553 47899999995222 111111 123456789999999999998887 89999999732111100
Q ss_pred CCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec-CCcEEEEecCC-ccccceeccccCCCccccccccc
Q 001165 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKG-EFYGAFELVHSSNDSSVAALSHH 184 (1134)
Q Consensus 107 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~-~~~~~~~~~~~~~~~~~i~~i~~ 184 (1134)
+.. + ...+ ...-.+++++++.++++.. ++.+.+|+.+. ...... .
T Consensus 77 --------~~~--~------~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------~---- 123 (343)
T 1ri6_A 77 --------AAE--S------ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV------------D---- 123 (343)
T ss_dssp --------EEE--E------ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE------------E----
T ss_pred --------ccc--c------ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc------------c----
Confidence 000 0 0001 1123467788888887775 67788776531 110100 0
Q ss_pred cCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE-cCCeEEEEEecc-CCccccc--eecccccCCCCCeE
Q 001165 185 FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY-SNGQLMSCSVSK-KGLKLAE--FIKIDKELGSGDAV 260 (1134)
Q Consensus 185 ~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~-~~~~~~~--~~~~~~~~~~~~~~ 260 (1134)
.......+.+++|+|+++.++++. .+|++.+|++.. ....... ... ......+.
T Consensus 124 -------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~ 181 (343)
T 1ri6_A 124 -------------------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPR 181 (343)
T ss_dssp -------------------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEE
T ss_pred -------------------cccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cCCCCCcc
Confidence 011223467789999999888877 899999999865 2221111 111 11224678
Q ss_pred EEEECCCCCEEEEe-eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCC--CcCeEEEEECCCCCEEEEE-E
Q 001165 261 CASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDD--TGPVSCIAWTPDNSAFAVG-W 336 (1134)
Q Consensus 261 ~va~spdg~llAsG-~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h--~g~V~~l~fSPDG~~Lasg-~ 336 (1134)
+++|+|+++.++++ ..++.|.+|+++..++.... .........++ ...+.+++|+|||++|+++ .
T Consensus 182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-----------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-----------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE-----------EeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 89999999966554 48899999999742221111 11111011112 3467889999999988755 4
Q ss_pred CCCcEEEEecC--CC--eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEE--eCCCceE
Q 001165 337 KSRGLTVWSVS--GC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRL 395 (1134)
Q Consensus 337 ~Dg~I~vWdv~--~~--~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W--~~~~~~l 395 (1134)
.++.|.+|++. ++ +.+..+..+ . .+.+++|+|++ +.+..+. .+.+| +.+++++
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg----~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNVDHSG----KYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEECTTS----SEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEECCCC----CEEEEecCCCCeEEEEEEcCCCcee
Confidence 78999999997 33 444555543 2 38899999998 6544332 78888 5555544
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.72 E-value=1.8e-15 Score=171.24 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=161.7
Q ss_pred cccEEEEEEcCCCCeEEEEEcC-CeEEEEEec--cCCccccceecccccCCCCCeEEEEECCCCCEEEEee-eCCeEEEE
Q 001165 208 SSAIIWLELCLPMRLLFVLYSN-GQLMSCSVS--KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT-RRGVVELY 283 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sD-G~v~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~-~dg~V~lw 283 (1134)
...+..++|+|+++.++++..+ |.+.+|+++ .........+. ....+.+++|+|+++.+++++ .++.|.+|
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----LPGSLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----CSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-----cCCCCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 3456779999999988888876 999999986 22222111111 123667899999999876665 48999999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecCC-CeeEE----Eecc
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSG-CRLMS----TIRQ 357 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~~-~~l~~----tl~~ 357 (1134)
++++ .. ..+....+. ....+.+++|+|||+.+++++ .++.|.+||+.+ +.+.. .+..
T Consensus 112 d~~~-~~-----------~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 174 (343)
T 1ri6_A 112 RLED-GL-----------PVGVVDVVE-----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT 174 (343)
T ss_dssp EEET-TE-----------EEEEEEEEC-----CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred ECCC-Cc-----------ccccccccc-----CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence 9951 11 222333322 234588999999999888887 889999999986 54432 2232
Q ss_pred CCCCceeeeEEcCCCCCCcceE-EEcc---eeEEEeCC--CceE--EEEec----CCC--ccE--EEEec-CCEEE-eee
Q 001165 358 ISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEY--GYRL--YAIEE----GSS--ERV--LIFSF-GKCCL-NRG 419 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~~~~~~l-~sgs---~i~~W~~~--~~~l--~~~~~----~h~--~~v--~~~s~-~k~l~-S~s 419 (1134)
+....+.+++|+|++ +.+ +++. .+.+|+.. ++++ ..... ++. ..+ +++++ ++.++ +..
T Consensus 175 ~~~~~~~~~~~~pdg----~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 175 VEGAGPRHMVFHPNE----QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp STTCCEEEEEECTTS----SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred CCCCCcceEEECCCC----CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 223468889999998 644 3432 89999984 3433 22221 111 122 67777 76665 566
Q ss_pred cCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe-CCCeE-EEEc--cCCcE
Q 001165 420 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDI--RQKKW 495 (1134)
Q Consensus 420 ~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg-~dG~i-lwd~--~sg~W 495 (1134)
.++.+.+|++........ ....+..+.. +..++|+|||++|++++ .+|.+ +|++ .++++
T Consensus 251 ~~~~i~v~d~~~~~~~~~----------------~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLS----------------KEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTTEEEEEEECTTSCCEE----------------EEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CCCEEEEEEEcCCCCceE----------------EeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 789999999863111110 0112222333 77899999999999988 57889 9954 46766
Q ss_pred EE
Q 001165 496 RV 497 (1134)
Q Consensus 496 k~ 497 (1134)
+.
T Consensus 314 ~~ 315 (343)
T 1ri6_A 314 HE 315 (343)
T ss_dssp EE
T ss_pred eE
Confidence 54
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=1.2e-15 Score=168.12 Aligned_cols=251 Identities=10% Similarity=-0.001 Sum_probs=165.0
Q ss_pred CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEe-cCcceecCCCCCCCcceee
Q 001165 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEKSIQIGGKQPSGLFFIK 117 (1134)
Q Consensus 39 ~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~-~~~~~~~~~~~~~~~~~~s 117 (1134)
+++|++|+.... .... .. .+.+.+.+++|||||++|++++ ++.|.+|++.. .........+..
T Consensus 21 ~~~i~~~d~~~~-~~~~-~~------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~------- 84 (297)
T 2ojh_A 21 RSSIEIFNIRTR-KMRV-VW------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT------- 84 (297)
T ss_dssp CEEEEEEETTTT-EEEE-EE------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-------
T ss_pred ceeEEEEeCCCC-ceee-ec------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-------
Confidence 468999999743 2221 11 1245688999999999999976 78999999976 322111111100
Q ss_pred EEEeeceeeccccccceEEEeeeCCCeEEEEe--cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccC
Q 001165 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1134)
Q Consensus 118 ~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t--~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~ 195 (1134)
......+++++++.++++. .++...+|.++........
T Consensus 85 -------------~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~--------------------------- 124 (297)
T 2ojh_A 85 -------------ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL--------------------------- 124 (297)
T ss_dssp -------------CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE---------------------------
T ss_pred -------------ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE---------------------------
Confidence 0011246677888888888 3455666666543211110
Q ss_pred CCcccccccCCCcccEEEEEEcCCCCeEE-EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe
Q 001165 196 SGAFVSDHKFPISSAIIWLELCLPMRLLF-VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG 274 (1134)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~i~fsp~~~~la-~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG 274 (1134)
+. ....+..+.|+|+++.++ ++..+|.+.+|.++...... ..+. .+...+.+++|+|+++.|+++
T Consensus 125 --------~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~----~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 125 --------MT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT----HGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp --------CC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC----CSSSCEEEEEECTTSSEEEEE
T ss_pred --------ee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc----cCCCccccceECCCCCEEEEE
Confidence 11 112378899999999877 67788998998875322111 1111 123568899999999988876
Q ss_pred e-eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC-----------CcEE
Q 001165 275 T-RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS-----------RGLT 342 (1134)
Q Consensus 275 ~-~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D-----------g~I~ 342 (1134)
+ .++.+++|+++.. +.....+.. |...+.+++|+|||++|++++.+ +.|.
T Consensus 191 ~~~~~~~~i~~~~~~--------------~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVD--------------GSSVERITD----SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp ECTTSSCEEEEEETT--------------SSCEEECCC----CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ecCCCCccEEEECCC--------------CCCcEEEec----CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 6 5899999998722 122233333 77889999999999999988876 4599
Q ss_pred EEecCCCee--EEEeccCCCCceeeeEEcCCCCCCcceEEEc
Q 001165 343 VWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSG 382 (1134)
Q Consensus 343 vWdv~~~~l--~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg 382 (1134)
+||+.++.. +..+.+| ...+.+++|+|++ +.++.+
T Consensus 253 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg----~~l~~~ 289 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGG-QGTMNSPNWSPDG----DEFAYV 289 (297)
T ss_dssp EEETTSCSCEEEEEEEES-TTTSCSCCBCTTS----SEEEEE
T ss_pred EEecCCCCceeeeccCCC-CcccccceECCCC----CEEEEE
Confidence 999988754 3334344 5678899999998 666644
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.69 E-value=8.6e-16 Score=193.82 Aligned_cols=238 Identities=13% Similarity=0.059 Sum_probs=157.7
Q ss_pred cEEEEEEcCCCCeEEEEEcC---------CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeE
Q 001165 210 AIIWLELCLPMRLLFVLYSN---------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVV 280 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sD---------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V 280 (1134)
.|.+++|||||+.+++++.+ +.+++|++............ .+...+.+++|||||+.||+++. ++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE----VSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT----CCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc----cccccccccEECCCCCEEEEEEC-CeE
Confidence 47899999999999999875 77889998754432111110 11233678999999999999875 799
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCc------------------CeEEEEECCCCCEEEEEECCC---
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG------------------PVSCIAWTPDNSAFAVGWKSR--- 339 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g------------------~V~~l~fSPDG~~Lasg~~Dg--- 339 (1134)
++|++. +++....... +.. .+.+++|||||+.||+++.|+
T Consensus 137 ~~~~~~---------------~g~~~~~~~~----~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 137 YYCAHV---------------GKQAIRVVST----GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV 197 (723)
T ss_dssp EEESSS---------------SSCCEEEECC----CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred EEEECC---------------CCceEEEecC----CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc
Confidence 999998 3333222211 222 348899999999999987653
Q ss_pred -------------------------------cEEEEecCCCeeEEEeccC-----CCCceeeeEEcCCCCCCcceEEEcc
Q 001165 340 -------------------------------GLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 340 -------------------------------~I~vWdv~~~~l~~tl~~h-----~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
.|.+||+.++.....+..+ +...+.+++|+||+ +.+++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg----~~l~~~~ 273 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST----KVAVTWL 273 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS----EEEEEEE
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC----eEEEEEE
Confidence 7999999888765566543 14568899999998 6665432
Q ss_pred -------eeEEEeCCCceEEEEecC-CCcc------EEEEec-CCEEEe--eecCC----cEEeeeee--eCCCeEEEee
Q 001165 384 -------SMMQWDEYGYRLYAIEEG-SSER------VLIFSF-GKCCLN--RGVSG----MTYARQVI--YGEDRLLVVQ 440 (1134)
Q Consensus 384 -------~i~~W~~~~~~l~~~~~~-h~~~------v~~~s~-~k~l~S--~s~d~----ti~~w~l~--~~~~~l~l~~ 440 (1134)
.+.+||+.++++...... +... -..|++ |+.++. ...++ ..++|.+. .+...
T Consensus 274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----- 348 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----- 348 (723)
T ss_dssp ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-----
T ss_pred cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-----
Confidence 688999999887665432 2221 257788 776654 44566 44444332 22210
Q ss_pred cCCCccccccccccceeeccCCCceEE-EEEcCCCCEEEEEeCC---CeE-EEEccC
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQH-VAASKDGMFLAVAGLH---GLI-LYDIRQ 492 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~-va~SpdG~~LAsgg~d---G~i-lwd~~s 492 (1134)
..+..+..+.+.+.. ++|||||++|+.++.+ +.+ +|++..
T Consensus 349 ------------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 349 ------------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp ------------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred ------------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 001223334455655 6999999999876655 677 999864
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=1.2e-15 Score=187.77 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=167.7
Q ss_pred ceeEEEeecCeEEEEEc--CCeEEEeecCCcceeEEEeecChhhHHhh-cceeEEEEcCCceEEEEEeC---CCEEEEEE
Q 001165 22 QQIIYFKVNNGLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTS---SLYLHIFK 95 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s--~~~l~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wSPDg~~Lav~t~---dg~l~lw~ 95 (1134)
...++|||||+.||.++ ++++.||+.+ ++.. ++.. .+. +.+..++|||| +.++++.. +...+||.
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~----~~lt---~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET----VKLN---REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE----EECC---SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEc-CCCc----Eeee---cccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 45589999999999876 6799999985 3322 1111 122 46788999999 77777765 45578888
Q ss_pred EEe--cCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEE-ecCCcEEEEecCCccccceecccc
Q 001165 96 VQI--TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHS 172 (1134)
Q Consensus 96 l~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~-t~dg~v~~~~wd~~~~~~~~~~~~ 172 (1134)
++. ........ ......+.++++||+.++.+ ..++.+.+|+.++. ....
T Consensus 95 ~~~~~~g~~~~l~----------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g--~~~~---- 146 (582)
T 3o4h_A 95 VNTSRPGEEQRLE----------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG--GLRE---- 146 (582)
T ss_dssp EETTSTTCCEECT----------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT--EEEE----
T ss_pred EeccCCCcccccc----------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC--cEEE----
Confidence 875 32111110 00012255788888765443 34555555433221 1110
Q ss_pred CCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcC----CeEEEEEeccCCcccccee
Q 001165 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN----GQLMSCSVSKKGLKLAEFI 248 (1134)
Q Consensus 173 ~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sD----G~v~l~~~~~~~~~~~~~~ 248 (1134)
+..+.. .+++|||||+.+++++.+ +.+++|++.+.......
T Consensus 147 -------------------------------l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~-- 191 (582)
T 3o4h_A 147 -------------------------------LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD-- 191 (582)
T ss_dssp -------------------------------EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC--
T ss_pred -------------------------------eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee--
Confidence 001111 678999999999988877 67888887654432211
Q ss_pred cccccCCCCCeEEEEECCCCCEEEEeeeCC--eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEE--
Q 001165 249 KIDKELGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIA-- 324 (1134)
Q Consensus 249 ~~~~~~~~~~~~~va~spdg~llAsG~~dg--~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~-- 324 (1134)
.+...+..++|||||+.||++..+| +|.+||++ +++.. .+.+ |.+.|..++
T Consensus 192 -----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~---------------~~~~~-~~~~----~~~~~~~~~~~ 246 (582)
T 3o4h_A 192 -----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPR---------------DGSVE-DLEL----PSKDFSSYRPT 246 (582)
T ss_dssp -----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT---------------TCCEE-ECCC----SCSHHHHHCCS
T ss_pred -----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCC---------------CCcEE-EccC----CCcChhhhhhc
Confidence 1235568999999999999888888 89999998 55544 4444 777777777
Q ss_pred ------ECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc
Q 001165 325 ------WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 383 (1134)
Q Consensus 325 ------fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs 383 (1134)
|||||+.+++++.||+++||++ +++..+. ...|.+++|+ ++ ..+++++
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg----~~l~~~s 300 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RG----KLVTSHT 300 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TT----EEEEEEE
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CC----EEEEEEc
Confidence 9999999999999999999999 4544322 3467888888 76 5555443
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=5.9e-15 Score=168.65 Aligned_cols=255 Identities=13% Similarity=0.132 Sum_probs=158.2
Q ss_pred ccEEEEEEcCCCCeEEEEEc---CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEee-eCCeEEEEe
Q 001165 209 SAIIWLELCLPMRLLFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT-RRGVVELYD 284 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~s---DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~-~dg~V~lwd 284 (1134)
..+..++|+|+++ ++++.. ++.+++|++............. +...+..++|+|+|++|++++ .+++|++|+
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~----~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA----PGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE----ESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec----CCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 3445689999999 555554 6899999985443222211111 125567899999999888877 789999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC-CCeeE--EEeccCCCC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLM--STIRQISLS 361 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~l~--~tl~~h~~~ 361 (1134)
++..............+.+ . ....+...+.+++|+|||+.++++..++.|.+|++. ++.+. ..+......
T Consensus 115 ~~~~g~~~~~~~~~~~~~~-p------~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHG-P------RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp ECTTSCEEEEEEEECCCCC-S------STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred eCCCCCeeecceeecCCCC-C------CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 9743221111000000000 0 000123458999999999966666678899999997 45432 222222233
Q ss_pred ceeeeEEcCCCCCCcceE-EEcc---eeEEEeCC--CceEEEE--ecCCC------ccE--EEEec-CCEE-EeeecCCc
Q 001165 362 SISSPIVKPNQDCKYEPL-MSGT---SMMQWDEY--GYRLYAI--EEGSS------ERV--LIFSF-GKCC-LNRGVSGM 423 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l-~sgs---~i~~W~~~--~~~l~~~--~~~h~------~~v--~~~s~-~k~l-~S~s~d~t 423 (1134)
....++|+|++ +.+ +++. .+.+|+.. ++++... ..... ..+ ++|++ ++.+ ++...+++
T Consensus 188 ~p~~~~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 188 GPRHLVFSPDG----QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp CEEEEEECTTS----SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCceEEECCCC----CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 57789999998 644 3322 78888876 3554322 21111 123 67888 8866 56667899
Q ss_pred EEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCC-CeE-EEE--ccCCcEE
Q 001165 424 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LYD--IRQKKWR 496 (1134)
Q Consensus 424 i~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~d-G~i-lwd--~~sg~Wk 496 (1134)
+.+|++..... +. ....+..+...++.++|||||++|++++.+ +.+ +|+ ..+|+.+
T Consensus 264 v~v~~~~~~g~-~~----------------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 264 LAVFAVTADGH-LT----------------LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECGGGC-EE----------------EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEECCCCc-EE----------------EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99999753221 10 112233444557799999999999998865 888 994 4566544
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.68 E-value=4.8e-15 Score=186.67 Aligned_cols=282 Identities=10% Similarity=0.004 Sum_probs=181.7
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
..|.+++|||+ +.++++ .+|.+++|++.......... +...+.+++|||||+.||++ .|++|++|+++..
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~-------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~ 151 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFD-------TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL 151 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEEC-------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccC-------CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence 56899999999 666665 56999999986543221111 22456678999999999994 7899999999831
Q ss_pred ccceeeeeeeccCcceEEEEeecc----------cCCCCcCeEEEEECCCCCEEEEEE----------------------
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRY----------SMDDTGPVSCIAWTPDNSAFAVGW---------------------- 336 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~----------~~~h~g~V~~l~fSPDG~~Lasg~---------------------- 336 (1134)
.+. .++........ ..++.+.+.+++|||||++||+++
T Consensus 152 ~~~----------~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 152 GEG----------MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp TSC----------CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred ccc----------CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 000 02221111100 001123368999999999999997
Q ss_pred -----------CCCcEEEEecCCCeeEEEecc-CCCCceeeeEEcCCCCCCcceEEEcc--------eeEEEeCCCc-eE
Q 001165 337 -----------KSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGY-RL 395 (1134)
Q Consensus 337 -----------~Dg~I~vWdv~~~~l~~tl~~-h~~~~V~sv~~sp~~~~~~~~l~sgs--------~i~~W~~~~~-~l 395 (1134)
.++.|.+||+.++........ .+...+.+++|+||+ +.++.++ ++.+||+.++ ++
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE----NILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS----SEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC----CEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 446799999998876544332 225678999999999 6666532 7889999988 44
Q ss_pred EEEec-CCCcc-----EEEEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceE
Q 001165 396 YAIEE-GSSER-----VLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 466 (1134)
Q Consensus 396 ~~~~~-~h~~~-----v~~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~ 466 (1134)
..... .+... -..|++ ++.+++++.|+.+++|.+...... ...+..+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~-------------------~~~l~~~~~~v~ 358 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL-------------------IRQVTKGEWEVT 358 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE-------------------EEECCCSSSCEE
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE-------------------EEecCCCCeEEE
Confidence 33322 12211 146776 667778888999999987632221 334556788887
Q ss_pred E-EEEcCCCCEEEEEeCC-C----eE-EEEccCCcEEEeCCccceeeeEEEEEEeeC--CEEEEEEEecCCCeeEEEEEe
Q 001165 467 H-VAASKDGMFLAVAGLH-G----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYP 537 (1134)
Q Consensus 467 ~-va~SpdG~~LAsgg~d-G----~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~--~~lv~~~~~~~~~~~eLrly~ 537 (1134)
. ++|||||+.|+.++.+ + .+ .||..++..+.+. +.. .+..+.|.+ +.++..+.. .....++.+|+
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~--~~~~~~~spdg~~l~~~~~~-~~~p~~i~l~d 432 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT---PES--GMHRTQLSPDGSAIIDIFQS-PTVPRKVTVTN 432 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC---CSS--SEEEEEECTTSSEEEEEEEC-SSCSCEEEEEE
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc---CCC--ceEEEEECCCCCEEEEEecC-CCCCcEEEEEE
Confidence 7 7999999988766654 3 45 6677777655443 122 244567764 456554332 23335677776
Q ss_pred CC
Q 001165 538 RY 539 (1134)
Q Consensus 538 ~~ 539 (1134)
..
T Consensus 433 ~~ 434 (706)
T 2z3z_A 433 IG 434 (706)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 144
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.4e-15 Score=191.97 Aligned_cols=331 Identities=9% Similarity=0.025 Sum_probs=192.3
Q ss_pred eEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec
Q 001165 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (1134)
Q Consensus 71 ~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~ 150 (1134)
..++|+|||+++++ +.||+|++|++..+........+ . . ........++++||+.|+.++.
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~---------------~-~--~~~~~~~~~~SpDg~~la~~~~ 79 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNR---------------T-M--KSVNASNYGLSPDRQFVYLESD 79 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHH---------------H-H--HTTTCSEEEECTTSSEEEEEEE
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccc---------------c-c--cccceeeEEECCCCCeEEEEec
Confidence 57899999975554 57999999999764321111000 0 0 0001223578889999988876
Q ss_pred ---------CCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC
Q 001165 151 ---------DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1134)
Q Consensus 151 ---------dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~ 221 (1134)
++.+++|+.++. .... .. .+ ...+.+++|||||+
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g--~~~~----------~~----------------------~l---~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNG--EFVR----------GN----------------------EL---PRPIQYLCWSPVGS 122 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTT--EECC----------SS----------------------CC---CSSBCCEEECSSTT
T ss_pred CceeEEeecceEEEEEECCCC--cccc----------ce----------------------ec---CcccccceECCCCC
Confidence 566665443322 1100 00 01 12466799999999
Q ss_pred eEEEEEcCCeEEEEEeccCCccccc--eecccccCC----------CCCeEEEEECCCCCEEEEeeeCC-----------
Q 001165 222 LLFVLYSNGQLMSCSVSKKGLKLAE--FIKIDKELG----------SGDAVCASIAPEQQILAVGTRRG----------- 278 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~va~spdg~llAsG~~dg----------- 278 (1134)
.++.+. ++++++|+.......... +.....+.+ .....+++|||||+.||+++.|.
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~ 201 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYY 201 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEEC
T ss_pred EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 999884 889999988654332111 000000000 01224899999999999988652
Q ss_pred -----------------------eEEEEeccccccceeeeeeeccCcceEE--EEee--cccCCCCcCeEEEEECCCCCE
Q 001165 279 -----------------------VVELYDLAESASLIRTVSLYDWGMREVY--YTFC--RYSMDDTGPVSCIAWTPDNSA 331 (1134)
Q Consensus 279 -----------------------~V~lwd~~~~~~~~~~l~l~~~~~~~~l--~~l~--~~~~~h~g~V~~l~fSPDG~~ 331 (1134)
+|++||++ +++.. ..+. ....+|.+.+.+++|||||+.
T Consensus 202 ~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~ 266 (719)
T 1z68_A 202 GDEQYPRTINIPYPKAGAKNPVVRIFIIDTT---------------YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV 266 (719)
T ss_dssp CSSSSCEEEEEECCBTTSCCCEEEEEEEESS---------------CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred CCCCCccceeecCCCCCCCCCeeEEEEEECC---------------CCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence 66677776 22211 0000 001137888999999999987
Q ss_pred EEEEECCC----cEEEEe----cCCCeeEEEec---cCCCCcee-----eeEEcCCCCCCcceEE--Ecc-----eeEEE
Q 001165 332 FAVGWKSR----GLTVWS----VSGCRLMSTIR---QISLSSIS-----SPIVKPNQDCKYEPLM--SGT-----SMMQW 388 (1134)
Q Consensus 332 Lasg~~Dg----~I~vWd----v~~~~l~~tl~---~h~~~~V~-----sv~~sp~~~~~~~~l~--sgs-----~i~~W 388 (1134)
+++....+ .|.+|| +.++++...+. ..+...+. .++|+|++ +.++ ++. .+.+|
T Consensus 267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~g~~~l~~~ 342 (719)
T 1z68_A 267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA----ISYYKIFSDKDGYKHIHYI 342 (719)
T ss_dssp EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS----SCEEEEEECTTSCEEEEEE
T ss_pred EEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC----CeEEEEEEccCCceEEEEE
Confidence 77754332 388899 77776554442 22244565 88999998 5432 221 67888
Q ss_pred eCCCceEEEEecCCCccE---EEEecCCEEEeeec-----CCcEEeeeeeeC-CC-eEEEeecCCCccccccccccceee
Q 001165 389 DEYGYRLYAIEEGSSERV---LIFSFGKCCLNRGV-----SGMTYARQVIYG-ED-RLLVVQSEDTDELKILHLNLPVSY 458 (1134)
Q Consensus 389 ~~~~~~l~~~~~~h~~~v---~~~s~~k~l~S~s~-----d~ti~~w~l~~~-~~-~l~l~~g~~~~~~~w~~~~~~~~~ 458 (1134)
+..+++.... ..+...+ ... .++.++..+. ++..++|.+... .. ... .+...+
T Consensus 343 ~~~~~~~~~l-t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~---------------~l~~~~ 405 (719)
T 1z68_A 343 KDTVENAIQI-TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK---------------CVTCHL 405 (719)
T ss_dssp SSCSTTCEEC-SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE---------------ESSTTT
T ss_pred ECCCCceEec-ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce---------------eccCcc
Confidence 9887764333 3333333 222 4555554443 477888886541 11 000 001112
Q ss_pred ccCCCceEEEEEcCCCCEEEEEe-CC--CeE-EEEccCCc
Q 001165 459 ISQNWPVQHVAASKDGMFLAVAG-LH--GLI-LYDIRQKK 494 (1134)
Q Consensus 459 ~~h~~~V~~va~SpdG~~LAsgg-~d--G~i-lwd~~sg~ 494 (1134)
.+|...+..++|||||++++..+ .. ..+ +||+.+++
T Consensus 406 ~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 406 RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 23566788999999999888543 32 345 78776664
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.66 E-value=5.7e-15 Score=181.75 Aligned_cols=276 Identities=9% Similarity=-0.051 Sum_probs=166.7
Q ss_pred cceeEEEEcCCceEEEEEeC-CCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEE
Q 001165 68 GENLQAVWSPDTKLIAVVTS-SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~-dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~ll 146 (1134)
.++..++|||||++||.++. +|+++||+++.+. ......+.. ..+. ..++++| +.++
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-~~~lt~~~~--~~~~------------------~~~~spd-~~l~ 79 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-TVKLNREPI--NSVL------------------DPHYGVG-RVIL 79 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-EEECCSSCC--SEEC------------------EECTTCS-EEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCC-cEeeecccc--cccc------------------cccCCCC-eEEE
Confidence 46889999999999999887 9999999985432 111111100 0011 1234444 3333
Q ss_pred EEec---CCcEEEEecCC--ccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCC
Q 001165 147 LGLS---DGSLYSISWKG--EFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1134)
Q Consensus 147 v~t~---dg~v~~~~wd~--~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~ 221 (1134)
++.. +....+|.++. ..... . ..... .+...+|+|+++
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~----------------------------------l~~~~--~~~~~~~s~dg~ 122 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ-R----------------------------------LEAVK--PMRILSGVDTGE 122 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE-E----------------------------------CTTSC--SBEEEEEEECSS
T ss_pred EeccCCCCcceEEEEEeccCCCccc-c----------------------------------ccCCC--CceeeeeCCCCC
Confidence 3432 23344444443 21110 0 00011 122457888886
Q ss_pred eEE-EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC----CeEEEEeccccccceeeee
Q 001165 222 LLF-VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR----GVVELYDLAESASLIRTVS 296 (1134)
Q Consensus 222 ~la-~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d----g~V~lwd~~~~~~~~~~l~ 296 (1134)
.++ +..+++...+|++.+......... .. .+++|||||+.||+++.+ ++|.+||++
T Consensus 123 ~~~~~s~~~~~~~l~d~~~g~~~~l~~~--------~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~---------- 183 (582)
T 3o4h_A 123 AVVFTGATEDRVALYALDGGGLRELARL--------PG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS---------- 183 (582)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEEEEE--------SS-CEEEEEEETTEEEEEEEEETTEEEEEEEETT----------
T ss_pred eEEEEecCCCCceEEEccCCcEEEeecC--------CC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC----------
Confidence 433 334556666998865433222111 11 689999999999988877 789999987
Q ss_pred eeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC--cEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCC
Q 001165 297 LYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 374 (1134)
Q Consensus 297 l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg--~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~ 374 (1134)
+++.. ++.+ |.+.+..++|||||+.|+++..++ .|.+||+.++... .+.++ ...+.+++ .
T Consensus 184 -----~g~~~-~l~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~----~-- 245 (582)
T 3o4h_A 184 -----SGGLR-VFDS----GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYR----P-- 245 (582)
T ss_dssp -----TCCCE-EECC----SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHC----C--
T ss_pred -----CCCce-Eeec----CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhh----h--
Confidence 44432 4444 888999999999999999888888 8999999988766 55544 33333322 0
Q ss_pred CcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccccc
Q 001165 375 KYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 454 (1134)
Q Consensus 375 ~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~ 454 (1134)
.+.....|+++ ++.+++++.++++++|++ ++..
T Consensus 246 ------~~~~~~~~spd--------------------g~~~~~~~~~g~~~l~~~--g~~~------------------- 278 (582)
T 3o4h_A 246 ------TAITWLGYLPD--------------------GRLAVVARREGRSAVFID--GERV------------------- 278 (582)
T ss_dssp ------SEEEEEEECTT--------------------SCEEEEEEETTEEEEEET--TEEE-------------------
T ss_pred ------ccccceeEcCC--------------------CcEEEEEEcCCcEEEEEE--CCee-------------------
Confidence 00001112222 334456677888888886 3220
Q ss_pred ceeeccCCCceEEEEEcCCCCEEEEEeCCCeE--EEEcc
Q 001165 455 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIR 491 (1134)
Q Consensus 455 ~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i--lwd~~ 491 (1134)
. .....|.+++|| ||+.+++++.+... +|...
T Consensus 279 -~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 279 -E---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp -C---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred -c---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 1 122468899999 99999998888764 55544
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.66 E-value=1.6e-13 Score=156.56 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=168.6
Q ss_pred CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeC---CCEEEEEEEEecCcceecCCCCCCCcce
Q 001165 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (1134)
Q Consensus 39 ~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~---dg~l~lw~l~~~~~~~~~~~~~~~~~~~ 115 (1134)
++.+.+|..+.....+..... ..+.+....++|||||+ |++++. ++.|.+|+++.+.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~----~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~----------- 78 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL----LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL----------- 78 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE----EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------
T ss_pred CCCEEEEEEcCCCCeEEEeee----eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------
Confidence 347888887632111111110 11224456799999999 665554 58999999964321110
Q ss_pred eeEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCCCcccccc
Q 001165 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (1134)
Q Consensus 116 ~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~ 194 (1134)
..+ .. .+....-.++++||+.++++. .++.+.+|..+.. +.... +..++. ...
T Consensus 79 ~~~--~~------~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~--g~~~~---------~~~~~~--~~~----- 132 (347)
T 3hfq_A 79 NTV--VA------PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD--GALTL---------TDTVQH--SGH----- 132 (347)
T ss_dssp EEE--EE------ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT--SCEEE---------EEEEEC--CCC-----
T ss_pred eee--ec------CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC--CCeee---------cceeec--CCC-----
Confidence 000 00 011112346788999899888 5788888776532 11100 000000 000
Q ss_pred CCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEecc-CCccccceecccccCCCCCeEEEEECCCCCEEEE
Q 001165 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV 273 (1134)
Q Consensus 195 ~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs 273 (1134)
.+ ........+.+++|+|+++++++...++++.+|++.. .......... ......+..++|+|+|+++++
T Consensus 133 ~p------~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 133 GP------RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT---MEAGFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp CS------STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE---CCTTCCEEEEEECTTSSEEEE
T ss_pred CC------CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE---cCCCCCCceEEECCCCCEEEE
Confidence 00 0112345688999999999666566688999999873 2211111111 111245778999999995555
Q ss_pred -eeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccC--CCCcCeEEEEECCCCCEE-EEEECCCcEEEEecCC-
Q 001165 274 -GTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSM--DDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSG- 348 (1134)
Q Consensus 274 -G~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~--~h~g~V~~l~fSPDG~~L-asg~~Dg~I~vWdv~~- 348 (1134)
+..++.|.+|+++..++.... +..+..... .....+..++|||||++| +++..++.|.+|++..
T Consensus 204 ~~~~~~~v~v~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 204 AGELSSQIASLKYDTQTGAFTQ-----------LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEE-----------EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EeCCCCEEEEEEecCCCCceEE-----------eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 567899999998842221111 111111000 012458899999999987 4556689999999862
Q ss_pred C--eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEE--eCCCceEEEE
Q 001165 349 C--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRLYAI 398 (1134)
Q Consensus 349 ~--~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W--~~~~~~l~~~ 398 (1134)
+ ..+..+..+ ...+.+++|+|++ +.++.+. .+.+| +.+++++..+
T Consensus 273 g~~~~~~~~~~~-~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 273 GHLTLIQQISTE-GDFPRDFDLDPTE----AFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp GCEEEEEEEECS-SSCCCEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CcEEEeEEEecC-CCCcCeEEECCCC----CEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 2 445555544 3457899999998 6555432 77888 6666666543
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=3.8e-15 Score=164.00 Aligned_cols=229 Identities=13% Similarity=0.069 Sum_probs=155.4
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEecc-CCccccceecccccCCCCCeEEEEECCCCCEEEEee--eCCeEEEE
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT--RRGVVELY 283 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~--~dg~V~lw 283 (1134)
+...|.+++|+|+++.++++. +|.+++|+... ......... .....+.+++|+|+++.|++++ .++.++||
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG-----FATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT-----TCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc-----cccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 456789999999999998875 88999999876 433211100 0124567899999999999998 44567777
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE-EEECCCcEEEEec--CCCeeEEEeccCCC
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA-VGWKSRGLTVWSV--SGCRLMSTIRQISL 360 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La-sg~~Dg~I~vWdv--~~~~l~~tl~~h~~ 360 (1134)
.++..+ ++ ...+. +...+.+++|+|||+.|+ +++.|+.++||++ .++. ...+..+ .
T Consensus 114 ~~~~~~-------------~~-~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~ 172 (297)
T 2ojh_A 114 LLPSTG-------------GT-PRLMT-----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG-E 172 (297)
T ss_dssp EEETTC-------------CC-CEECC-----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS-S
T ss_pred EEECCC-------------Cc-eEEee-----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC-C
Confidence 665211 11 11211 233589999999999887 7888999999996 3443 3444444 5
Q ss_pred CceeeeEEcCCCCCCcceEEEcc----eeEEEeCC-CceEEEEecCCCccE--EEEec-CCEEEeeecC-----------
Q 001165 361 SSISSPIVKPNQDCKYEPLMSGT----SMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVS----------- 421 (1134)
Q Consensus 361 ~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~-~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d----------- 421 (1134)
..+.+++|+|++ +.++.++ .+.+|... .+........|...+ ..+++ ++.++.++.+
T Consensus 173 ~~~~~~~~s~dg----~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 173 GRNDGPDYSPDG----RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp SCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred CccccceECCCC----CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 678999999998 6555322 67777764 333344455555555 56677 8888777665
Q ss_pred CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 422 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 422 ~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
+.+.+|++..+.... ...+.+|...|.+++|||||++|++++.+.
T Consensus 249 ~~l~~~d~~~~~~~~------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVET------------------LFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEE------------------EEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCcee------------------eeccCCCCcccccceECCCCCEEEEEEecc
Confidence 457788865443321 122346777889999999999999887653
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.65 E-value=3.9e-14 Score=160.22 Aligned_cols=278 Identities=10% Similarity=0.091 Sum_probs=167.6
Q ss_pred EeecC-eEEEEEc-CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeC-CCEEEEEEEEecCcce
Q 001165 27 FKVNN-GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-SLYLHIFKVQITEKSI 103 (1134)
Q Consensus 27 fS~dg-~llAs~s-~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~-dg~l~lw~l~~~~~~~ 103 (1134)
|++++ +++++.+ +++|.+||.... ..+.... . +.... .++|+|||+.+++++. ++.|.+||+.......
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~-~-----~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTL-EILNQIT-L-----GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV 76 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTC-CEEEEEE-C-----CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCccc-ceeeeEE-c-----cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE
Confidence 55554 4566655 579999999633 3222221 1 12234 8999999997777766 7899999986542101
Q ss_pred ecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCC---cEEEEecCCccccceeccccCCCccccc
Q 001165 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG---SLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 104 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg---~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
. . +.. +.......+++++|+.++++..++ .+.+|+.+.. ....
T Consensus 77 ~------------~--~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--~~~~------------ 122 (331)
T 3u4y_A 77 V------------A--IQE------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--KFIS------------ 122 (331)
T ss_dssp E------------E--EEE------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--EEEE------------
T ss_pred E------------e--ccc------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--CeEE------------
Confidence 0 0 000 000011146778888888544443 7777554322 1110
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE-EcCCe-EEEEEeccCCccccceecccccCCCCC
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL-YSNGQ-LMSCSVSKKGLKLAEFIKIDKELGSGD 258 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~-~sDG~-v~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1134)
. ........+++|+|+++.++++ ..++. +.+|+++........... .......
T Consensus 123 ~-----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~--~~~~~~~ 177 (331)
T 3u4y_A 123 T-----------------------IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE--FISGGTR 177 (331)
T ss_dssp E-----------------------EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE--EECSSSS
T ss_pred E-----------------------EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc--cccCCCC
Confidence 0 0112345789999999866555 45588 999998643221110000 0112355
Q ss_pred eEEEEECCCCCEE-EEeeeCCeEEEEeccccccceeeeeeeccCcceE---EEEeecccCCCCcCeEEEEECCCCCEEEE
Q 001165 259 AVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGMREV---YYTFCRYSMDDTGPVSCIAWTPDNSAFAV 334 (1134)
Q Consensus 259 ~~~va~spdg~ll-AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~---l~~l~~~~~~h~g~V~~l~fSPDG~~Las 334 (1134)
+.+++|+|+|+.+ +++..+++|++||++ +++. +.++. +...+..++|+|||++|++
T Consensus 178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~---------------~~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLIGNSIGILETQ---------------NPENITLLNAVG-----TNNLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECS---------------STTSCEEEEEEE-----CSSCCCCEEECTTSSEEEE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECC---------------CCcccceeeecc-----CCCCCceEEECCCCCEEEE
Confidence 7899999999955 555578999999998 4444 44443 2356788999999997776
Q ss_pred EE-CCCcEEEEecCCCee--EEEeccC----C--CCceeeeEEcCCCCCCcceE-EEcc---eeEEEeCCCceE
Q 001165 335 GW-KSRGLTVWSVSGCRL--MSTIRQI----S--LSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRL 395 (1134)
Q Consensus 335 g~-~Dg~I~vWdv~~~~l--~~tl~~h----~--~~~V~sv~~sp~~~~~~~~l-~sgs---~i~~W~~~~~~l 395 (1134)
+. .++.|.+||..++++ +.++..+ . ...+..++|+|++ +.+ +++. .+.+|++.+..+
T Consensus 238 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTE----TKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTS----SEEEEEETTTTEEEEEETTSCEE
T ss_pred EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCC----CEEEEecCCCCcEEEEEecCCcc
Confidence 65 468899999998876 4333221 0 1122457899998 554 3322 788899876543
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.65 E-value=4.9e-14 Score=159.37 Aligned_cols=243 Identities=11% Similarity=0.067 Sum_probs=156.3
Q ss_pred ccEEEEEEcCCCCeEEEEEc-CCeEEEEEeccCCccccceecccccCCCCCeEE-EEECCCCCEEEEeeeCC---eEEEE
Q 001165 209 SAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRG---VVELY 283 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-va~spdg~llAsG~~dg---~V~lw 283 (1134)
..+ .++|+|+++.++++.. ++++++|+....... ..... .+ ..... ++|+|+++.++++..++ +|.+|
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~----~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQ----EG-QSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEE----EC-SSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecc----cC-CCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 344 8999999997666665 889999988654431 11111 12 23344 99999999998666553 99999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE-ECCCc-EEEEecCCCeeE-----EEec
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG-WKSRG-LTVWSVSGCRLM-----STIR 356 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg-~~Dg~-I~vWdv~~~~l~-----~tl~ 356 (1134)
|++ +++.+..+.. .....+++|+|||++|+++ ..++. |.+|++.....+ ..+.
T Consensus 114 d~~---------------~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 114 SFL---------------KNKFISTIPI-----PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp ETT---------------TTEEEEEEEC-----CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred ECC---------------CCCeEEEEEC-----CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence 998 6666665543 3446899999999865555 56688 999998643222 2222
Q ss_pred cCCCCceeeeEEcCCCCCCcce-EEEcc---eeEEEeCCCceE---EEEecCCCcc-EEEEec-CCEEE-eeecCCcEEe
Q 001165 357 QISLSSISSPIVKPNQDCKYEP-LMSGT---SMMQWDEYGYRL---YAIEEGSSER-VLIFSF-GKCCL-NRGVSGMTYA 426 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~-l~sgs---~i~~W~~~~~~l---~~~~~~h~~~-v~~~s~-~k~l~-S~s~d~ti~~ 426 (1134)
. ......++|+|++ +. ++++. .+.+|++.++++ +.....+... -++|++ ++.++ +...++.+.+
T Consensus 174 ~--~~~~~~~~~spdg----~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 174 G--GTRPFNITFTPDG----NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp S--SSSEEEEEECTTS----SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred C--CCCccceEECCCC----CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 2 3457899999998 63 34432 899999988876 5555433222 277888 77554 4445778888
Q ss_pred eeeeeCCCeEEEeecCCCccccccccccceeeccCCC---ceEEEEEcCCCCEEEEEeC-CCeE-EEEccCCcEEEe
Q 001165 427 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW---PVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKWRVF 498 (1134)
Q Consensus 427 w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~---~V~~va~SpdG~~LAsgg~-dG~i-lwd~~sg~Wk~F 498 (1134)
|+...+..... .. ++.....+.. ....++|||||++|++++. +|.+ +||+.++.-..+
T Consensus 248 ~d~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 248 FNQLSGTLSFV--KS------------FGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp EETTTTEEEEE--EE------------EECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred EECCCCceeee--cc------------cccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence 88654432110 00 0111001111 1246899999999987765 5588 999987654443
No 150
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=3.8e-14 Score=179.89 Aligned_cols=349 Identities=10% Similarity=0.005 Sum_probs=191.1
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCCeEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHML 146 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~ll 146 (1134)
....++|+|||++++++ ||+|++|++.++.......++... ...... .+++|||+.|+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~Spdg~~l~ 77 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD------------------EFGHSINDYSISPDGQFIL 77 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT------------------TCCSCCCEEEECTTSSEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh------------------hhcccccceEECCCCCEEE
Confidence 34689999999999886 899999999765433222222111 000112 46788999999
Q ss_pred EEecCCcE-------EEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCC
Q 001165 147 LGLSDGSL-------YSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1134)
Q Consensus 147 v~t~dg~v-------~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~ 219 (1134)
.++.+..+ ..+.||.++.... .+..+...+...+||||
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~-----------------------------------~l~~~~~~~~~~~~SPd 122 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQLI-----------------------------------TEERIPNNTQWVTWSPV 122 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEEC-----------------------------------CSSCCCTTEEEEEECSS
T ss_pred EEECCeeeEEEccceEEEEEECCCCcEE-----------------------------------EcccCCCcceeeEECCC
Confidence 88875332 1223443322111 12344567899999999
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccc--eeccc------ccCC----CCCeEEEEECCCCCEEEEeeeCCe-EEEEecc
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAE--FIKID------KELG----SGDAVCASIAPEQQILAVGTRRGV-VELYDLA 286 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~--~~~~~------~~~~----~~~~~~va~spdg~llAsG~~dg~-V~lwd~~ 286 (1134)
|+.+|.+ .|+.+++|+..+....+.. +.... .|.. ......++|||||+.||.++.|.+ |++|++.
T Consensus 123 G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 123 GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE
Confidence 9999988 5789999987654432211 10000 0000 012235899999999999876544 7777653
Q ss_pred cccc--------------------ceeeeeeeccCc---ce--EEEEeecc--cCCCCcCeEEEEECCCCCEEEEEEC--
Q 001165 287 ESAS--------------------LIRTVSLYDWGM---RE--VYYTFCRY--SMDDTGPVSCIAWTPDNSAFAVGWK-- 337 (1134)
Q Consensus 287 ~~~~--------------------~~~~l~l~~~~~---~~--~l~~l~~~--~~~h~g~V~~l~fSPDG~~Lasg~~-- 337 (1134)
.... ....+.+.+..+ ++ ....+... ..+|...+..++|||||+.++....
T Consensus 202 ~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~ 281 (740)
T 4a5s_A 202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI 281 (740)
T ss_dssp ECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred eecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC
Confidence 2110 001122222223 31 11122100 0026778999999999997666533
Q ss_pred --CCcEEEEecCCCe----eE--EEe--ccCCCCcee-----eeEEcCCCCCCcceEE-Ecc------eeEEEeCCCceE
Q 001165 338 --SRGLTVWSVSGCR----LM--STI--RQISLSSIS-----SPIVKPNQDCKYEPLM-SGT------SMMQWDEYGYRL 395 (1134)
Q Consensus 338 --Dg~I~vWdv~~~~----l~--~tl--~~h~~~~V~-----sv~~sp~~~~~~~~l~-sgs------~i~~W~~~~~~l 395 (1134)
+..|.+||+.++. +. .++ .++ ...|. +++|+||+ +.++ ..+ .+.+|+..+++.
T Consensus 282 ~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG----~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 282 QNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG----NSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp TTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS----SEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC----CEEEEEEEcCCCceEEEEEECCCCce
Confidence 2369999998765 21 112 222 33444 78999998 5544 222 788899888776
Q ss_pred EEEecCCCccE-EEEec-CCEEE-eeec----CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEE
Q 001165 396 YAIEEGSSERV-LIFSF-GKCCL-NRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 468 (1134)
Q Consensus 396 ~~~~~~h~~~v-~~~s~-~k~l~-S~s~----d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~v 468 (1134)
..+..+. -.+ ..+.+ ++.++ +++. .+..++|.+........ ..+.....+....+...
T Consensus 357 ~~lT~g~-~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~--------------~~lt~~~~~~~~~~~~~ 421 (740)
T 4a5s_A 357 TFITKGT-WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV--------------TCLSCELNPERCQYYSV 421 (740)
T ss_dssp EESCCSS-SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE--------------EESSTTTSTTTBCBEEE
T ss_pred EecccCC-EEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcc--------------eeeccccCCCCCceEEE
Confidence 6555442 222 11222 44433 3332 23344544322111000 00000011223457889
Q ss_pred EEcCCCCEEEEEeCC-C--eE-EEEccCC
Q 001165 469 AASKDGMFLAVAGLH-G--LI-LYDIRQK 493 (1134)
Q Consensus 469 a~SpdG~~LAsgg~d-G--~i-lwd~~sg 493 (1134)
+|||||++++..... + .+ +++..++
T Consensus 422 ~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 422 SFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 999999988765543 2 33 5555444
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.64 E-value=4.2e-14 Score=160.99 Aligned_cols=231 Identities=9% Similarity=0.006 Sum_probs=161.0
Q ss_pred EEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCccccceecccc---cCCCCCeEEEEECCCCCEEEEee--eCCeEEEEe
Q 001165 211 IIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVCASIAPEQQILAVGT--RRGVVELYD 284 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~va~spdg~llAsG~--~dg~V~lwd 284 (1134)
+..++|+|+++.++++. .++.+.+|+................ ......+.+++|+|+++.+++++ .++.|.+||
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 45688999999666554 4689999987654321111100000 00011267899999999877766 478999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC---CCC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI---SLS 361 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h---~~~ 361 (1134)
.. +++....+.. +...+.+++|+|||+.|++++.++.|.+||..+++....+... ...
T Consensus 171 ~~---------------~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 231 (353)
T 3vgz_A 171 GG---------------NIKLKTAIQN----TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH 231 (353)
T ss_dssp TT---------------TTEEEEEECC----CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC
T ss_pred CC---------------CCceEEEecC----CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc
Confidence 98 6666666543 4455888999999999999999999999999998888776541 134
Q ss_pred ceeeeEEcCCCCCCcceEE-Ec---ceeEEEeCCCceEEEEecCCCccEEEEec-CCEE-EeeecCCcEEeeeeeeCCCe
Q 001165 362 SISSPIVKPNQDCKYEPLM-SG---TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDR 435 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~-sg---s~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l-~S~s~d~ti~~w~l~~~~~~ 435 (1134)
.+.+++++|++ ..+. ++ ..+.+||..++++......+...-+.+++ ++.+ ++...++++.+||...++.
T Consensus 232 ~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~- 306 (353)
T 3vgz_A 232 FFINISLDTAR----QRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV- 306 (353)
T ss_dssp CEEEEEEETTT----TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE-
T ss_pred ccceEEECCCC----CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE-
Confidence 57789999998 5443 32 28999999998887665543333377888 7744 4555789999999654432
Q ss_pred EEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 436 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 436 l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
...+.. ...+..++|+|||++|++++.++.
T Consensus 307 -------------------~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 307 -------------------VKTFDT-PTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp -------------------EEEEEC-CSEEEEEEECTTSCEEEEEEECCC
T ss_pred -------------------EEEEec-CCCCCeEEEcCCCCEEEEEEcccc
Confidence 111222 235689999999999998887753
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.64 E-value=2.4e-14 Score=161.54 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=157.1
Q ss_pred EEEEEEcCCCCeEEEE-EcCCeEEEEEeccCCccccceecccccC-CCCCeEEEEECCCCCEEEEee------------e
Q 001165 211 IIWLELCLPMRLLFVL-YSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAVCASIAPEQQILAVGT------------R 276 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~-~sDG~v~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~va~spdg~llAsG~------------~ 276 (1134)
+..++|+|+++.++++ ..++.+.+|+........ .+...... +...+.+++|+|+|+.+++++ .
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG--RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE--EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe--eEEcCCcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence 5678999999866554 457899999876543211 11100000 001455789999999988886 5
Q ss_pred CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 277 RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 277 dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
++.|.+||++ +++.+..+.. ...+.+++|+|||++|+++ ++.|.+||+.+++....+.
T Consensus 114 ~~~i~v~d~~---------------~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 114 PTRVALYDAE---------------TLSRRKAFEA-----PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp CCEEEEEETT---------------TTEEEEEEEC-----CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred CceEEEEECC---------------CCcEEEEEeC-----CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 7999999998 5555555432 3457889999999998888 6899999999988887776
Q ss_pred cCCCCceeeeEEcCCCCCCcceEE-Ecc--------------------------eeEEEeCCCceEEEE-ecCCCccE--
Q 001165 357 QISLSSISSPIVKPNQDCKYEPLM-SGT--------------------------SMMQWDEYGYRLYAI-EEGSSERV-- 406 (1134)
Q Consensus 357 ~h~~~~V~sv~~sp~~~~~~~~l~-sgs--------------------------~i~~W~~~~~~l~~~-~~~h~~~v-- 406 (1134)
.+.. ...+.++|++ ..+. ++. .+.+||+.++++... ...+...+
T Consensus 172 ~~~~--~~~~~~s~dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 245 (337)
T 1pby_B 172 IQSW--EAETYAQPDV----LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS 245 (337)
T ss_dssp STTT--TTTTBCCCBC----CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred cccc--CCCceeCCCc----cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceee
Confidence 5421 1234677876 3221 110 367899998876422 22333344
Q ss_pred EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 001165 407 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 485 (1134)
Q Consensus 407 ~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ 485 (1134)
+++++ ++.++++ ++.+.+||+..++. ...+. ....+.+++|+|||++|++++.++.
T Consensus 246 ~~~s~dg~~l~~~--~~~v~~~d~~~~~~--------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 246 TAVNPAKTRAFGA--YNVLESFDLEKNAS--------------------IKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp EEECTTSSEEEEE--ESEEEEEETTTTEE--------------------EEEEE-CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred EEECCCCCEEEEe--CCeEEEEECCCCcC--------------------cceec-CCCceeeEEECCCCCEEEEEcCCCc
Confidence 67777 7777776 68999999654332 11111 1234678999999999999999999
Q ss_pred E-EEEccCCc
Q 001165 486 I-LYDIRQKK 494 (1134)
Q Consensus 486 i-lwd~~sg~ 494 (1134)
+ +||+.+++
T Consensus 303 i~v~d~~~~~ 312 (337)
T 1pby_B 303 LAAYDAETLE 312 (337)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECcCCc
Confidence 9 99998875
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.63 E-value=6e-13 Score=152.90 Aligned_cols=292 Identities=13% Similarity=0.090 Sum_probs=169.2
Q ss_pred CCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCC----CEEEEEEEEecCcceecCCCCCCCcc
Q 001165 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKVQITEKSIQIGGKQPSGLF 114 (1134)
Q Consensus 39 ~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d----g~l~lw~l~~~~~~~~~~~~~~~~~~ 114 (1134)
++.|.+|..+.....+..... . +.+....++|+|||++|++++.+ |.+.+|+++.....+..
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~--------- 91 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSD----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL--------- 91 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEE----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE---------
T ss_pred CCCEEEEEEeCCCCCEEEeec----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE---------
Confidence 457999987521111111111 1 12344679999999999999886 79999999864211110
Q ss_pred eeeEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccc
Q 001165 115 FIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (1134)
Q Consensus 115 ~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~ 193 (1134)
+.. . .. .......++.+++.++++. .++.+.+|..+.. +... .+.......+.+
T Consensus 92 ~~~---~-----~~--~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~--g~~~---------~~~~~~~~~g~~---- 146 (361)
T 3scy_A 92 LNT---Q-----KT--MGADPCYLTTNGKNIVTANYSGGSITVFPIGQD--GALL---------PASDVIEFKGSG---- 146 (361)
T ss_dssp EEE---E-----EC--SSSCEEEEEECSSEEEEEETTTTEEEEEEBCTT--SCBC---------SCSEEEECCCCC----
T ss_pred eeE---e-----cc--CCCCcEEEEECCCEEEEEECCCCEEEEEEeCCC--CcCc---------ccceeEEccCCC----
Confidence 000 0 00 0112334444788888877 4678887765432 1110 000000000000
Q ss_pred cCCCcccccccCCCcccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCc----c--ccc-eecccccCCCCCeEEEEEC
Q 001165 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGL----K--LAE-FIKIDKELGSGDAVCASIA 265 (1134)
Q Consensus 194 ~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~----~--~~~-~~~~~~~~~~~~~~~va~s 265 (1134)
......+...+.+++|+|+++.++++. .++++.+|+++.... . ... ............+.+++|+
T Consensus 147 -------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s 219 (361)
T 3scy_A 147 -------PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN 219 (361)
T ss_dssp -------SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC
T ss_pred -------CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc
Confidence 001123345678899999999666655 478999998864331 1 000 0000011123557799999
Q ss_pred CCCCEEEEee-eCCeEEEEeccccccceeeeeeeccCcceE--EEEeecccCCCCcCeEEEEECCCCCEEEEEECC--Cc
Q 001165 266 PEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGMREV--YYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS--RG 340 (1134)
Q Consensus 266 pdg~llAsG~-~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~--l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D--g~ 340 (1134)
|+|+++++++ .+++|.+|++++ ++. +..+. ....+...+.+++|||||++|+++..+ +.
T Consensus 220 pdg~~l~v~~~~~~~v~v~~~~~---------------g~~~~~~~~~-~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 220 SDGKFAYLINEIGGTVIAFRYAD---------------GMLDEIQTVA-ADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp TTSSEEEEEETTTCEEEEEEEET---------------TEEEEEEEEE-SCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCCCEEEEEcCCCCeEEEEEecC---------------CceEEeEEEe-cCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 9999887776 689999999972 211 11111 112244557899999999999777654 89
Q ss_pred EEEEecC--CCe--eEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEE--EeCCCceEEEE
Q 001165 341 LTVWSVS--GCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ--WDEYGYRLYAI 398 (1134)
Q Consensus 341 I~vWdv~--~~~--l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~--W~~~~~~l~~~ 398 (1134)
|.+|++. ++. .+..+.. ...+.+++|+|++ +.+..+. .+.+ ||.+++++...
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNG----KYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTS----CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCC----CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 9999995 344 3334433 2457889999998 6555433 6667 56667776554
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.63 E-value=2.4e-13 Score=154.61 Aligned_cols=260 Identities=12% Similarity=0.026 Sum_probs=176.0
Q ss_pred cccEEEEEEcCCCCeEEEEEc-------CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE-EEeeeCCe
Q 001165 208 SSAIIWLELCLPMRLLFVLYS-------NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL-AVGTRRGV 279 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~s-------DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll-AsG~~dg~ 279 (1134)
...+..++|+|+++.++++.. +|++.+|+........ .+. ....+.+++|+|+++.+ +++..++.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~-----~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIH-----NDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEE-----ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEe-----cCCCcceEEECCCCCEEEEEecCCCE
Confidence 345778999999998888774 5678888875433211 111 11346678999999955 45556799
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCc---------CeEEEEECCCCCEEEEEE--CCCcEEEEecCC
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG---------PVSCIAWTPDNSAFAVGW--KSRGLTVWSVSG 348 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g---------~V~~l~fSPDG~~Lasg~--~Dg~I~vWdv~~ 348 (1134)
|.+||.+ +++.+.++.. +.+ .+.+++|+|||+.+++++ .++.|.+||..+
T Consensus 113 v~~~d~~---------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 113 VTAIDAK---------------TGEVKGRLVL----DDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEEETT---------------TCCEEEEEES----CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEEEeCC---------------CCeeEEEEec----CCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 9999998 5555555443 221 278999999999887776 478899999999
Q ss_pred CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecC----CCccE--EEEec-CCEEEee
Q 001165 349 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG----SSERV--LIFSF-GKCCLNR 418 (1134)
Q Consensus 349 ~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~----h~~~v--~~~s~-~k~l~S~ 418 (1134)
++....+..+ ...+.+++++|++ +.+..+. .+.+||..+++....... +...+ +++++ ++.+..+
T Consensus 174 ~~~~~~~~~~-~~~~~~~~~s~dg----~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 174 IKLKTAIQNT-GKMSTGLALDSEG----KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TEEEEEECCC-CTTCCCCEEETTT----TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CceEEEecCC-CCccceEEECCCC----CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 9988888744 3457899999998 5554433 888999999988766543 22333 67777 7765554
Q ss_pred e-cCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe-CCCeE-EEEccCCcE
Q 001165 419 G-VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKKW 495 (1134)
Q Consensus 419 s-~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg-~dG~i-lwd~~sg~W 495 (1134)
+ .++.+.+||...++.. ..+.... + ..++|+|||+++++++ .++.+ +||..+++.
T Consensus 249 ~~~~~~v~~~d~~~~~~~--------------------~~~~~~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNIL--------------------AKVAAPE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp ESSSSEEEEEETTTCCEE--------------------EEEECSS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred eCCCCEEEEEECCCCcEE--------------------EEEEcCC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 4 4588999987554321 1111111 2 4689999999877776 58899 999988864
Q ss_pred EEeCCccceeeeEEEEEEee--CCEEEEEEE
Q 001165 496 RVFGDITQEQKIQSKGLLWL--GKIIVVCNY 524 (1134)
Q Consensus 496 k~F~~~~~e~~~~v~gl~W~--~~~lv~~~~ 524 (1134)
...- ... ....++.|. ++.+.+++.
T Consensus 307 ~~~~--~~~--~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 307 VKTF--DTP--THPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEE--ECC--SEEEEEEECTTSCEEEEEEE
T ss_pred EEEE--ecC--CCCCeEEEcCCCCEEEEEEc
Confidence 3211 111 134567775 445666544
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.62 E-value=3.7e-15 Score=176.92 Aligned_cols=214 Identities=13% Similarity=0.119 Sum_probs=139.8
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccce----eeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI----RTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF 332 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~----~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L 332 (1134)
..+.++++++++.++++|+.|| +++|+..+..... ....+.. .....+ ..|.+.|++++|+|||++|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~v~~l~~spdg~~l 107 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVD---KVQGLL-----VPMKFPIHHLALSCDNLTL 107 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEE---CCCCEE-----ECCSSCEEEEEECTTSCEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccc---cCcccc-----ccCCCcccEEEEcCCCCEE
Confidence 4567899999999999999887 9998875321100 0000000 000001 1267789999999999999
Q ss_pred E----EEECCCcEEEEecCCC--------ee---EEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEE
Q 001165 333 A----VGWKSRGLTVWSVSGC--------RL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA 397 (1134)
Q Consensus 333 a----sg~~Dg~I~vWdv~~~--------~l---~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~ 397 (1134)
| +|+.|++|+|||+.++ +. +..+.+| ...|.+++|+|++
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~------------------------- 161 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTV------------------------- 161 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSC-------------------------
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCC-------------------------
Confidence 9 7888999999998653 11 1222223 3344444444432
Q ss_pred EecCCCccEEEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEE
Q 001165 398 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 477 (1134)
Q Consensus 398 ~~~~h~~~v~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~L 477 (1134)
++.+++++.|+++++||+..+.. .....+|...|++++|||+|++|
T Consensus 162 --------------~~~las~s~Dg~v~iwD~~~~~~--------------------~~~~~~~~~~v~~v~wspdg~~l 207 (434)
T 2oit_A 162 --------------PSMVAVCLADGSIAVLQVTETVK--------------------VCATLPSTVAVTSVCWSPKGKQL 207 (434)
T ss_dssp --------------TTEEEEEETTSCEEEEEESSSEE--------------------EEEEECGGGCEEEEEECTTSSCE
T ss_pred --------------CCEEEEEECCCeEEEEEcCCCcc--------------------eeeccCCCCceeEEEEcCCCCEE
Confidence 34567888899999999865422 22345678889999999999999
Q ss_pred EEEeCCCeE-EEEccCCcEEEeCCcc---ceeeeEEEEEEeeCCEEEEEEEecCCC----eeEEEEEeCC
Q 001165 478 AVAGLHGLI-LYDIRQKKWRVFGDIT---QEQKIQSKGLLWLGKIIVVCNYIDSSN----TYELLFYPRY 539 (1134)
Q Consensus 478 Asgg~dG~i-lwd~~sg~Wk~F~~~~---~e~~~~v~gl~W~~~~lv~~~~~~~~~----~~eLrly~~~ 539 (1134)
|+|+.||.+ +||+....-+.+.... .++...+..+.|.++...++.+...++ ...+++|...
T Consensus 208 asgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 208 AVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred EEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 999999999 9999833333332211 122357889999877555544543332 3458888875
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.58 E-value=2.4e-12 Score=147.90 Aligned_cols=258 Identities=10% Similarity=0.108 Sum_probs=155.7
Q ss_pred cccEEEEEEcCCCCeEEEEEcC----CeEEEEEeccC--CccccceecccccCCCCCeEEEEECCCCCEEEEee-eCCeE
Q 001165 208 SSAIIWLELCLPMRLLFVLYSN----GQLMSCSVSKK--GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT-RRGVV 280 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sD----G~v~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~-~dg~V 280 (1134)
...+..++|+|+++.++++..+ |.+.+|+++.. ......... .+...+..+++ +++.+++++ .+++|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~----~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK----TMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE----CSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec----cCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 3445568999999999998876 79999988653 111111111 12245667777 788776665 68999
Q ss_pred EEEeccccccceeeeeeec-cCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecCCCe-------e
Q 001165 281 ELYDLAESASLIRTVSLYD-WGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCR-------L 351 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~-~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~~~~-------l 351 (1134)
.+|+++............. .+.+.. ....+...+.+++|+|||++|++++ .++.|.+|++.... +
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEFKGSGPD------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEECCCCCSC------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred EEEEeCCCCcCcccceeEEccCCCCC------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 9999974332111100000 000000 0011344578999999999776665 47899999886432 2
Q ss_pred E-----EEeccCCCCceeeeEEcCCCCCCcceEE-Ec---ceeEEEeCCCceEEEE--ecC---CCcc--EEEEec-CCE
Q 001165 352 M-----STIRQISLSSISSPIVKPNQDCKYEPLM-SG---TSMMQWDEYGYRLYAI--EEG---SSER--VLIFSF-GKC 414 (1134)
Q Consensus 352 ~-----~tl~~h~~~~V~sv~~sp~~~~~~~~l~-sg---s~i~~W~~~~~~l~~~--~~~---h~~~--v~~~s~-~k~ 414 (1134)
. ............+++|+|++ +.+. ++ .++.+|+..++++... ... +... -++|++ ++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~ 272 (361)
T 3scy_A 197 LTKGTPEAFKVAPGSGPRHLIFNSDG----KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY 272 (361)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECTTS----SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE
T ss_pred eecccccceecCCCCCCeEEEEcCCC----CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE
Confidence 1 12222223467899999998 5443 33 2899999987765322 211 1122 267888 887
Q ss_pred EEeeec--CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe-CCCeE-EEEc
Q 001165 415 CLNRGV--SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDI 490 (1134)
Q Consensus 415 l~S~s~--d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg-~dG~i-lwd~ 490 (1134)
++.++. ++++.+|++......+.. ...+.. ...++.++|||||++|++++ .++.+ +|++
T Consensus 273 l~v~~~~~~~~i~v~~~~~~~g~~~~----------------~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDETNGTLTK----------------VGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEECSSSCEEEEEEECTTTCCEEE----------------EEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCCEEEEEEEcCCCCcEEE----------------eeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 755554 588999997522211100 111112 34567999999999999998 56888 8654
Q ss_pred --cCCcEEEe
Q 001165 491 --RQKKWRVF 498 (1134)
Q Consensus 491 --~sg~Wk~F 498 (1134)
.+++....
T Consensus 336 d~~~g~~~~~ 345 (361)
T 3scy_A 336 DQATGLLTDI 345 (361)
T ss_dssp CTTTCCEEEC
T ss_pred ECCCCcEeec
Confidence 56765543
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.57 E-value=1.4e-13 Score=163.40 Aligned_cols=207 Identities=13% Similarity=0.051 Sum_probs=138.3
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcc--------ccceecc-cccCCCCCeEEEEECCCCCEEE----Eeee
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK--------LAEFIKI-DKELGSGDAVCASIAPEQQILA----VGTR 276 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~va~spdg~llA----sG~~ 276 (1134)
.+..++++++++.++++..|| +.+|........ ....... ........+++++|+|++++|| +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 467788999999999998888 777665321100 0000000 0011235699999999999999 7888
Q ss_pred CCeEEEEeccccccc-eeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC-CCEEEEEECCCcEEEEecCCCeeEEE
Q 001165 277 RGVVELYDLAESASL-IRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMST 354 (1134)
Q Consensus 277 dg~V~lwd~~~~~~~-~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD-G~~Lasg~~Dg~I~vWdv~~~~l~~t 354 (1134)
|++|+|||+...... .+... .-..+..+. +|.+.|++++|+|+ +++||+|+.||+|++||+.++.....
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~-----~~~~~~~~~----~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKR-----PFAYHKLLK----DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCC-----CSEEEECCC----SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred CceEEEEEccccccCCcCCcc-----eeeeeeccC----CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 999999999732100 00000 000122333 39999999999998 89999999999999999988866655
Q ss_pred eccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC-------CccEEEEec---CCEEE-eeec
Q 001165 355 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-------SERVLIFSF---GKCCL-NRGV 420 (1134)
Q Consensus 355 l~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h-------~~~v~~~s~---~k~l~-S~s~ 420 (1134)
..+| ...|.+++|+|++ ..+++|+ ++++|+.+ ++.......| ...+..+.+ ...++ ..+.
T Consensus 188 ~~~~-~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 188 TLPS-TVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EECG-GGCEEEEEECTTS----SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred ccCC-CCceeEEEEcCCC----CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 5555 6789999999998 8888877 89999998 4444443332 225655555 33332 2333
Q ss_pred CCc------EEeeeeeeC
Q 001165 421 SGM------TYARQVIYG 432 (1134)
Q Consensus 421 d~t------i~~w~l~~~ 432 (1134)
||. +++|++...
T Consensus 262 dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCSSSCCEEEEEECCCT
T ss_pred CCccCCCCceEEEEeccC
Confidence 432 778887644
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.56 E-value=4.7e-13 Score=154.66 Aligned_cols=244 Identities=9% Similarity=0.066 Sum_probs=152.7
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEec-cCCccccceecccccCCCCCeEEEEECCCCC--EEEEee-----------
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAVCASIAPEQQ--ILAVGT----------- 275 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~va~spdg~--llAsG~----------- 275 (1134)
.+..++|+|+++.++++..+ .+.+|++. .........+. ..+...+++|+|+|+ +++++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-----~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-----IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-----CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-----cCCCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 45678999999988888777 89999986 32221111111 012345689999999 455653
Q ss_pred --eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CCcEEEEecC-CCee
Q 001165 276 --RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS-GCRL 351 (1134)
Q Consensus 276 --~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg~I~vWdv~-~~~l 351 (1134)
.+|++.+|+++.... ...++......+...+.+++|||||++|+++.. ++.|.+|++. ++++
T Consensus 115 ~~~~g~v~v~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGK--------------LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp SSSCCEEEEEEECTTCC--------------EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred ecCCceEEEEccCCCCc--------------CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence 689999999973222 111111010114567999999999999888764 5799999997 5654
Q ss_pred E--EEeccC-CCCceeeeEEcCCCCCCcceEEEcc----eeEEEeC--CCceEEE----E--ec----CCCc------cE
Q 001165 352 M--STIRQI-SLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDE--YGYRLYA----I--EE----GSSE------RV 406 (1134)
Q Consensus 352 ~--~tl~~h-~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~--~~~~l~~----~--~~----~h~~------~v 406 (1134)
. ..+... +...+.+++|+|++ +.+..+. ++.+|+. .++++.. . .. +|.. .+
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTG----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred EEeeeEecCCCCCCCCEeEECCCC----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence 2 334311 13468899999998 6554322 7778764 3555431 1 11 1221 23
Q ss_pred --EE-Eec-CCEEEeeecCC------cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcC---C
Q 001165 407 --LI-FSF-GKCCLNRGVSG------MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---D 473 (1134)
Q Consensus 407 --~~-~s~-~k~l~S~s~d~------ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~Sp---d 473 (1134)
++ +++ ++.+++++.+. ++.+|++..... +.. +......+...+..++||| |
T Consensus 257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-~~~---------------~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-IEK---------------QLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-EEE---------------EEEEEECSSCCTTCCCEEECTTC
T ss_pred ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-EEE---------------eeeeeecCCCCcccceecCCCcC
Confidence 66 788 88777655432 799999753221 100 0000112333345789999 8
Q ss_pred CCEEEEEeCC-CeE-EEEccCC
Q 001165 474 GMFLAVAGLH-GLI-LYDIRQK 493 (1134)
Q Consensus 474 G~~LAsgg~d-G~i-lwd~~sg 493 (1134)
|++|++++.+ +.+ +|++..+
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEEEEcCCCeEEEEEEchh
Confidence 9999999875 888 9998776
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=4.4e-13 Score=151.07 Aligned_cols=262 Identities=13% Similarity=0.041 Sum_probs=167.0
Q ss_pred CeEEEEEcCCeEEEEEeccCCccccceecccccCCCC-CeEEEEECCCCCEE-EEeeeCCeEEEEeccccccceeeeeee
Q 001165 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG-DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~va~spdg~ll-AsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
++++++..+|++.+|+........ .+.. .+.. .+.+++|+|+++.+ +++..++.|.+||+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~--~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~------------ 64 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK--VITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV------------ 64 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE--EEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT------------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE--EEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC------------
Confidence 367888899999999876433211 1110 0101 46789999999765 555668999999998
Q ss_pred ccCcceEEEEeecccC-CCCcCeEEEEECCCCCEEEEEE------------CCCcEEEEecCCCeeEEEeccCCCCceee
Q 001165 299 DWGMREVYYTFCRYSM-DDTGPVSCIAWTPDNSAFAVGW------------KSRGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~-~h~g~V~~l~fSPDG~~Lasg~------------~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
+++.+.++..... .|...+.+++|+|||++|+++. .++.|.+||+.+++....+.. ...+.+
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~ 139 (337)
T 1pby_B 65 ---TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITM 139 (337)
T ss_dssp ---TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCC
T ss_pred ---CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcce
Confidence 5555544432000 0122577899999999999886 579999999999888777764 235788
Q ss_pred eEEcCCCCCCcceEEE-cceeEEEeCCCceEEEEecCCC-ccEEEEec-CCEEEeeec-CCc------------------
Q 001165 366 PIVKPNQDCKYEPLMS-GTSMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GKCCLNRGV-SGM------------------ 423 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~s-gs~i~~W~~~~~~l~~~~~~h~-~~v~~~s~-~k~l~S~s~-d~t------------------ 423 (1134)
++|+|++ ..+.. ...+.+|++.++++......+. ..-..+++ ++.+...+. ++.
T Consensus 140 ~~~s~dg----~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 140 LAWARDG----SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp EEECTTS----SCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred eEECCCC----CEEEEeCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 9999998 64544 4489999999998876654332 11124455 444433222 222
Q ss_pred -----EEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEE-
Q 001165 424 -----TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR- 496 (1134)
Q Consensus 424 -----i~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk- 496 (1134)
+.+||...++.. ...+..+...+..++|||||++++++ ++.+ +||+.+++..
T Consensus 216 ~~~~~v~~~d~~~~~~~-------------------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~ 274 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-------------------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK 274 (337)
T ss_dssp GEEEEEEEEETTTCCEE-------------------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE
T ss_pred ccccceEEEeCCCCCce-------------------EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc
Confidence 334443222210 11223445567889999999999988 6888 9999887532
Q ss_pred EeCCccceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 497 VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 497 ~F~~~~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.+.. . ..+.++.|. ++.++++ ..+..|++|+..
T Consensus 275 ~~~~---~--~~~~~~~~s~dg~~l~~~-----~~~~~i~v~d~~ 309 (337)
T 1pby_B 275 RVPL---P--HSYYSVNVSTDGSTVWLG-----GALGDLAAYDAE 309 (337)
T ss_dssp EEEC---S--SCCCEEEECTTSCEEEEE-----SBSSEEEEEETT
T ss_pred eecC---C--CceeeEEECCCCCEEEEE-----cCCCcEEEEECc
Confidence 1111 1 123467776 4456654 234679999774
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.55 E-value=1.6e-13 Score=155.64 Aligned_cols=158 Identities=12% Similarity=0.047 Sum_probs=112.4
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE-EEeeeCCeEEEEeccccccce
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLI 292 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll-AsG~~dg~V~lwd~~~~~~~~ 292 (1134)
++++++++.+++...+|++++|+........ .+.. .....+..++|+|+++.+ +++..+++|.+||++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~--~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~------ 73 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK--SCVM---PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD------ 73 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE--EEEC---SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT------
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEE--EEec---CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC------
Confidence 4567888889999999999999986543211 1111 011246789999999865 455678999999998
Q ss_pred eeeeeeccCcceEEEEeecccCCC-----CcCeEEEEECCCCCEEEEEECC------------CcEEEEecCCCe---eE
Q 001165 293 RTVSLYDWGMREVYYTFCRYSMDD-----TGPVSCIAWTPDNSAFAVGWKS------------RGLTVWSVSGCR---LM 352 (1134)
Q Consensus 293 ~~l~l~~~~~~~~l~~l~~~~~~h-----~g~V~~l~fSPDG~~Lasg~~D------------g~I~vWdv~~~~---l~ 352 (1134)
+++....+.. .+ ...+.+++|+|||++|++++.+ +.|.+||+.+++ .+
T Consensus 74 ---------t~~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 74 ---------TCKNTFHANL---SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp ---------TTEEEEEEES---CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred ---------CCcEEEEEEc---ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 5555555432 12 2337889999999999999865 899999998743 33
Q ss_pred EEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEec
Q 001165 353 STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 353 ~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~ 400 (1134)
..+.. ...+.+++|+|++ ..++.+..+.+||+.++++.....
T Consensus 142 ~~~~~--~~~~~~~~~s~dg----~l~~~~~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 142 RTFPM--PRQVYLMRAADDG----SLYVAGPDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp EEEEC--CSSCCCEEECTTS----CEEEESSSEEEECTTTCCEEEEEC
T ss_pred eeccC--CCcccceeECCCC----cEEEccCcEEEEeCCCCceecccc
Confidence 34433 2358889999998 655555589999999888766553
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.55 E-value=5e-14 Score=177.83 Aligned_cols=239 Identities=10% Similarity=0.031 Sum_probs=152.4
Q ss_pred EEEEEEcCCCCeEEEEEc---------CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 211 IIWLELCLPMRLLFVLYS---------NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~s---------DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
+.+++|||||+.+++++. ++++++|++.+........+ ...+.+++|||||+.||++. +++|+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-------~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-------PRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-------CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-------CcccccceECCCCCEEEEEE-CCeEE
Confidence 778999999999999876 78999999865433100111 14567899999999999985 88999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCc---------CeEEEEECCCCCEEEEEECCC-------------
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG---------PVSCIAWTPDNSAFAVGWKSR------------- 339 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g---------~V~~l~fSPDG~~Lasg~~Dg------------- 339 (1134)
+|++..... . .+...+ .....+.| |.. ...+++|||||+.||+++.|.
T Consensus 134 ~~~~~~g~~--~--~l~~~~--~~~~v~~g----~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~ 203 (719)
T 1z68_A 134 LKQRPGDPP--F--QITFNG--RENKIFNG----IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD 203 (719)
T ss_dssp EESSTTSCC--E--ECCCCC--BTTTEEES----SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS
T ss_pred EEeCCCCCc--E--EEecCC--CcCCeEcc----cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence 999973211 0 000000 00000011 222 225899999999999988652
Q ss_pred ---------------------cEEEEecCCCeeE--EE------eccCCCCceeeeEEcCCCCCCcceEEEcc-------
Q 001165 340 ---------------------GLTVWSVSGCRLM--ST------IRQISLSSISSPIVKPNQDCKYEPLMSGT------- 383 (1134)
Q Consensus 340 ---------------------~I~vWdv~~~~l~--~t------l~~h~~~~V~sv~~sp~~~~~~~~l~sgs------- 383 (1134)
.|.+||+.++... .. +.+| ...+.+++|+||+ +.+++..
T Consensus 204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD~----~~~~~~~~~~~~~~ 278 (719)
T 1z68_A 204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS-DYYFSWLTWVTDE----RVCLQWLKRVQNVS 278 (719)
T ss_dssp SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS-CEEEEEEEESSSS----EEEEEEEESSTTEE
T ss_pred CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC-cceEEEeEEeCCC----eEEEEEeccccCeE
Confidence 7889999887642 11 2233 5578999999997 6665522
Q ss_pred eeEEEe----CCCceEEEEe----cCCCcc-------EEEEec-CCEEE--eeecCCcEEeeeeeeCCCeEEEeecCCCc
Q 001165 384 SMMQWD----EYGYRLYAIE----EGSSER-------VLIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQSEDTD 445 (1134)
Q Consensus 384 ~i~~W~----~~~~~l~~~~----~~h~~~-------v~~~s~-~k~l~--S~s~d~ti~~w~l~~~~~~l~l~~g~~~~ 445 (1134)
.+.+|+ +.++++.... .+|... ...|++ ++.++ +...++..++|........
T Consensus 279 ~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------- 348 (719)
T 1z68_A 279 VLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------- 348 (719)
T ss_dssp EEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----------
T ss_pred EEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----------
Confidence 478899 8887765444 244432 246777 76443 3445665555443221110
Q ss_pred cccccccccceeeccCCCceEEEEEcCCCCEEEEEeCC-----CeE-EEEccC
Q 001165 446 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-----GLI-LYDIRQ 492 (1134)
Q Consensus 446 ~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~d-----G~i-lwd~~s 492 (1134)
+..+..+.+.|..+.++ ||+.|+..+.+ +.. +|.+..
T Consensus 349 ---------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 349 ---------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ---------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ---------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 23344567778888888 88888877765 667 888753
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=1.1e-12 Score=151.77 Aligned_cols=268 Identities=13% Similarity=0.053 Sum_probs=163.9
Q ss_pred EeeeCCCeEEEEec-CCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEE
Q 001165 137 NIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1134)
Q Consensus 137 ~~s~d~~~llv~t~-dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~ 215 (1134)
+++|||+.|+.++. +|...+|.|+........+ ..++...+..+.
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l----------------------------------t~~~~~~~~~~~ 87 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL----------------------------------TEGRGDNTFGGF 87 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC----------------------------------CCSSCBCSSSCE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe----------------------------------eeCCCCCccceE
Confidence 57889999888887 7765566666543222110 111222233457
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCe--EEEEECCCCCEEEEe-------------------
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDA--VCASIAPEQQILAVG------------------- 274 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~va~spdg~llAsG------------------- 274 (1134)
|+|+++.++++..++.+++|++........... ....+ ....++|+++.++..
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQV------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeeec------hhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 999999999999999999999875443221111 11212 223469999998742
Q ss_pred ---eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECC------CcEEEE
Q 001165 275 ---TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVW 344 (1134)
Q Consensus 275 ---~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~D------g~I~vW 344 (1134)
..++.|.+||+. +++.. .+.. +.+.+..++||| ||+.||.+..+ ..|.++
T Consensus 162 ~~~~~~~~l~~~d~~---------------~g~~~-~l~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLK---------------TGEST-VILQ----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp GGGCCCEEEEEEETT---------------TCCEE-EEEE----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred hccCCcceEEEEECC---------------CCceE-Eeec----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 234678888887 44432 2222 566789999999 99999887763 377788
Q ss_pred ecCCCeeEEEeccCCC-CceeeeEEcCCCCCCcceEEEcc--------eeEEEeCCCceEEEE--ecCCCccE-----EE
Q 001165 345 SVSGCRLMSTIRQISL-SSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAI--EEGSSERV-----LI 408 (1134)
Q Consensus 345 dv~~~~l~~tl~~h~~-~~V~sv~~sp~~~~~~~~l~sgs--------~i~~W~~~~~~l~~~--~~~h~~~v-----~~ 408 (1134)
+..++.. ..+..+.. ..+..++|+|++ +.++..+ .+.+|++.+++.... ..++.... ..
T Consensus 222 d~~~~~~-~~l~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 222 NEDGTNM-RKVKTHAEGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp ETTSCCC-EESCCCCTTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred eCCCCce-EEeeeCCCCcccccceECCCC----CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 8876653 33433322 357889999999 6554322 288999998875333 22210000 24
Q ss_pred Eec-CCEEEee---------ecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCC-----------ceEE
Q 001165 409 FSF-GKCCLNR---------GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----------PVQH 467 (1134)
Q Consensus 409 ~s~-~k~l~S~---------s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~-----------~V~~ 467 (1134)
+++ ++.++.. ..+..+.+|++..+..+ .+..+.. .+.+
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~~~~~~~~~~~~~~ 355 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH---------------------RVARHDTSWKVFEGDRQVTHPH 355 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEEE---------------------EEEECCCCCCCBTTBSSTTCCC
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCceE---------------------EeccccCcccccccccccCCCC
Confidence 667 6655532 34556778876443321 1222222 4678
Q ss_pred EEEcCCCCEEEEEe-CCCeE-EEEc
Q 001165 468 VAASKDGMFLAVAG-LHGLI-LYDI 490 (1134)
Q Consensus 468 va~SpdG~~LAsgg-~dG~i-lwd~ 490 (1134)
++|||||++|+.++ .+|.. +|.+
T Consensus 356 ~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 356 PSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCCCEEEEEecCCCceeEEEE
Confidence 89999999998766 46666 6654
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.46 E-value=5e-12 Score=145.97 Aligned_cols=259 Identities=10% Similarity=0.037 Sum_probs=150.8
Q ss_pred eEEEeecCeEEEEEcCCeEEEeecC-CcceeEEEeecChhhHHhhcceeEEEEcCCceE--EEEEe-------------C
Q 001165 24 IIYFKVNNGLLLIASPCHIELWSSS-QHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVT-------------S 87 (1134)
Q Consensus 24 iv~fS~dg~llAs~s~~~l~IW~~~-~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~--Lav~t-------------~ 87 (1134)
.++|||||+++++++.++|.+|+.+ .+.. ...... . ..|....++|+|||+. ++++. .
T Consensus 44 ~~a~spdg~~l~~~~~~~v~~~~~~~~g~~-~~~~~~-~----~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMKKWSSFAVKSPTEI-VHEASH-P----IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp EEEECTTSSEEEEEEBTEEEEEEEEETTEE-EEEEEE-E----CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred EEEECCCCCEEEEEccceEEEEEECCCCCE-EEeeEe-e----cCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 4889999998877776699999985 2321 111110 0 1133456899999995 44543 5
Q ss_pred CCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec-CCcEEEEecCCccccc
Q 001165 88 SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGA 166 (1134)
Q Consensus 88 dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~~~~~~ 166 (1134)
+|++.+|+++...+... .+...... ......-.++++||+.++++.. ++.|.+|..+. . +.
T Consensus 118 ~g~v~v~~~~~~g~~~~------------~~~~~~~~----~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~-g~ 179 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEK------------NVQNYEYQ----ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-S-GE 179 (365)
T ss_dssp CCEEEEEEECTTCCEEE------------EEEEEECC----TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-T-SC
T ss_pred CceEEEEccCCCCcCcc------------eEeeEEeC----CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-C-CC
Confidence 88999999964221110 00000000 0011122467788888887654 56888776652 1 11
Q ss_pred eeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEc-CCeEEEEEeccC--Ccc
Q 001165 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKK--GLK 243 (1134)
Q Consensus 167 ~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~--~~~ 243 (1134)
... +..+ ....+...+..++|+|+++.++++.. ++++.+|+.+.. ...
T Consensus 180 ~~~---------~~~~--------------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 180 VEL---------VGSV--------------------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp EEE---------EEEE--------------------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEE---------eeeE--------------------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 100 0000 00112455789999999998888775 688999887531 111
Q ss_pred c-cceec--ccccCCCC-------CeEEEE-ECCCCCEEEEeeeC-C-----eEEEEeccccccceeeeeeeccCcceEE
Q 001165 244 L-AEFIK--IDKELGSG-------DAVCAS-IAPEQQILAVGTRR-G-----VVELYDLAESASLIRTVSLYDWGMREVY 306 (1134)
Q Consensus 244 ~-~~~~~--~~~~~~~~-------~~~~va-~spdg~llAsG~~d-g-----~V~lwd~~~~~~~~~~l~l~~~~~~~~l 306 (1134)
. ...+. +....+.. .+..++ |+|||+.|+++..+ + +|.+|+++..........
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~---------- 300 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF---------- 300 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE----------
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeee----------
Confidence 0 01111 00001112 477899 99999988877653 3 899999963211110000
Q ss_pred EEeecccCCCCcCeEEEEECC---CCCEEEEEECC-CcEEEEecCCCe
Q 001165 307 YTFCRYSMDDTGPVSCIAWTP---DNSAFAVGWKS-RGLTVWSVSGCR 350 (1134)
Q Consensus 307 ~~l~~~~~~h~g~V~~l~fSP---DG~~Lasg~~D-g~I~vWdv~~~~ 350 (1134)
.... +...+..++||| ||++|++++.+ ++|+||++.+..
T Consensus 301 -~~~~----~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 301 -LSPT----PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp -EEEC----SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred -eeec----CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 1111 334466789999 89999999865 899999997763
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.46 E-value=5.2e-12 Score=143.15 Aligned_cols=257 Identities=10% Similarity=0.040 Sum_probs=155.7
Q ss_pred EEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeecccc-ccceEEEeeeCCCeEEEEe-
Q 001165 72 QAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGL- 149 (1134)
Q Consensus 72 ~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~V~~~s~d~~~llv~t- 149 (1134)
.++++++++.+++++.++.|.+||+.... ... .+. .+. ....-.+++++++.++++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-~~~------------~~~--------~~~~~~~~~~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-VYK------------SCV--------MPDKFGPGTAMMAPDNRTAYVLNN 62 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE-EEE------------EEE--------CSSCCSSCEEEECTTSSEEEEEET
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc-EEE------------EEe--------cCCCCCCceeEECCCCCEEEEEeC
Confidence 46789999999999999999999986431 110 000 000 0012346677888777665
Q ss_pred cCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcC
Q 001165 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (1134)
Q Consensus 150 ~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sD 229 (1134)
.++.|.+|+.+ ...... .++... ........+..++|+|+++.++++..+
T Consensus 63 ~~~~i~~~d~~--t~~~~~------------~~~~~~----------------~~~~~~~~~~~~~~spdg~~l~~~~~~ 112 (349)
T 1jmx_B 63 HYGDIYGIDLD--TCKNTF------------HANLSS----------------VPGEVGRSMYSFAISPDGKEVYATVNP 112 (349)
T ss_dssp TTTEEEEEETT--TTEEEE------------EEESCC----------------STTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred CCCcEEEEeCC--CCcEEE------------EEEccc----------------ccccccccccceEECCCCCEEEEEccc
Confidence 46777765433 211110 000000 000012335678999999999998876
Q ss_pred ------------CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeee
Q 001165 230 ------------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1134)
Q Consensus 230 ------------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l 297 (1134)
+.+.+|++............ .+...+.+++|+|+|+ +.+++ +.|.+||+.+.. ....+..
T Consensus 113 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~-~~~~~~~ 184 (349)
T 1jmx_B 113 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGK-YTVALPL 184 (349)
T ss_dssp EEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCC-EEEEECS
T ss_pred ccccccccccCCCeEEEEECCCccccceeeec----cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCc-eeccccc
Confidence 89999998653221111110 1224577899999999 44443 449999987432 1111111
Q ss_pred eccC-----------------------------------------------------cceE-EEEeecccCCCCcCeEEE
Q 001165 298 YDWG-----------------------------------------------------MREV-YYTFCRYSMDDTGPVSCI 323 (1134)
Q Consensus 298 ~~~~-----------------------------------------------------~~~~-l~~l~~~~~~h~g~V~~l 323 (1134)
..++ +++. ...+.. +...+.++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 260 (349)
T 1jmx_B 185 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LTELYFTG 260 (349)
T ss_dssp TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CSSCEEEE
T ss_pred cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc----CCCcceee
Confidence 0000 0000 000001 23457789
Q ss_pred EECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe
Q 001165 324 AWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 324 ~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~ 399 (1134)
+|+| ||++++++ ++.|.+||+.+++...++..+ ..+.+++|+|++ +.+..+. .+.+||.++++++...
T Consensus 261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 261 LRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKG----DKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSS----SCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCccceEECCCC----CEEEEecCCCeEEEEeccccceeeee
Confidence 9999 99999998 789999999999888777643 357789999998 5554433 8999999988876554
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.45 E-value=1.6e-12 Score=150.46 Aligned_cols=260 Identities=10% Similarity=-0.013 Sum_probs=141.8
Q ss_pred EEEeecCeEEEEEcC-C---eEEEeecCCcceeEEEeecChhhHHhhc-ceeEEEEcCCceEEEEEeCCCEEEEEEEEec
Q 001165 25 IYFKVNNGLLLIASP-C---HIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1134)
Q Consensus 25 v~fS~dg~llAs~s~-~---~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~ 99 (1134)
.+|||||+.||.+++ + .|.+|+...+ ... .. + ..++ .+..++|||||+.|+.++.++.|.+|++..+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~-~l--t----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VAT-QL--T----EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEE-EC--C----CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceE-Ee--e----eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 468999999888765 3 3888888633 221 11 1 1122 2336789999999999999999999998764
Q ss_pred CcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecC--------------------CcEEEEec
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD--------------------GSLYSISW 159 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~d--------------------g~v~~~~w 159 (1134)
........+.. ..... ...+.+++..++....+ ....++.|
T Consensus 113 ~~~~~~~~~~~---~~~~~----------------~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 113 EENVVYQVPAE---WVGYG----------------TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp CEEEEEECCTT---EEEEE----------------EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred cceeeeechhh---ccccc----------------ceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 32211110100 00000 11224455444322111 11111222
Q ss_pred CCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC-CCCeEEEEEcCC------eE
Q 001165 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL-PMRLLFVLYSNG------QL 232 (1134)
Q Consensus 160 d~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp-~~~~la~~~sDG------~v 232 (1134)
+....... .+..+...+..+.|+| +++.++.+..++ ++
T Consensus 174 d~~~g~~~-----------------------------------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (388)
T 3pe7_A 174 DLKTGEST-----------------------------------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM 218 (388)
T ss_dssp ETTTCCEE-----------------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred ECCCCceE-----------------------------------EeecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence 22111100 1122345678899999 999998887643 56
Q ss_pred EEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee-CC----eEEEEeccccccceeeeeeeccCcceE--
Q 001165 233 MSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-RG----VVELYDLAESASLIRTVSLYDWGMREV-- 305 (1134)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-dg----~V~lwd~~~~~~~~~~l~l~~~~~~~~-- 305 (1134)
++++..+.......... ....+...+|||||+.||..+. ++ .|.+||++ +++.
T Consensus 219 ~~~d~~~~~~~~l~~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~---------------~g~~~~ 278 (388)
T 3pe7_A 219 WLINEDGTNMRKVKTHA-----EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE---------------TLENRQ 278 (388)
T ss_dssp EEEETTSCCCEESCCCC-----TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT---------------TCCEEE
T ss_pred EEEeCCCCceEEeeeCC-----CCcccccceECCCCCEEEEEecCCCCCcceEEEEecC---------------CCceEE
Confidence 66665443222111100 0023567899999998876544 22 49999987 2321
Q ss_pred EEEeecccCCCCc---CeEEEEECCCCCEEEEE---------ECCCcEEEEecCCCeeEEEeccCCCC-----------c
Q 001165 306 YYTFCRYSMDDTG---PVSCIAWTPDNSAFAVG---------WKSRGLTVWSVSGCRLMSTIRQISLS-----------S 362 (1134)
Q Consensus 306 l~~l~~~~~~h~g---~V~~l~fSPDG~~Lasg---------~~Dg~I~vWdv~~~~l~~tl~~h~~~-----------~ 362 (1134)
+..+.+ +.. ....++|||||+.|+.. ..+..|.+||+.+++.. .+..+ .. .
T Consensus 279 l~~~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~ 352 (388)
T 3pe7_A 279 LTSMPA----CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARH-DTSWKVFEGDRQVT 352 (388)
T ss_dssp EEEECC----EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEEC-CCCCCCBTTBSSTT
T ss_pred EEcCCC----ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eeccc-cCcccccccccccC
Confidence 111111 100 01123799999988854 44568999999987653 34333 22 3
Q ss_pred eeeeEEcCCC
Q 001165 363 ISSPIVKPNQ 372 (1134)
Q Consensus 363 V~sv~~sp~~ 372 (1134)
+.+++|+|++
T Consensus 353 ~~~~~~spDg 362 (388)
T 3pe7_A 353 HPHPSFTPDD 362 (388)
T ss_dssp CCCCEECTTS
T ss_pred CCCccCCCCC
Confidence 6777888887
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.43 E-value=9.5e-12 Score=143.76 Aligned_cols=271 Identities=12% Similarity=0.060 Sum_probs=159.6
Q ss_pred eeEEEeecCeEEEEEc-----------CCeEEEeecCCcceeEEEeecChhhHHhhc-ceeEEEEcCCceEEEEEeC--C
Q 001165 23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTS--S 88 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-----------~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wSPDg~~Lav~t~--d 88 (1134)
+-++|||||+++.++. +++|.+||.. ....+....-..... ..| ....+++||||++|+++.. +
T Consensus 53 p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~-~~g~~p~~i~~spdg~~l~v~n~~~~ 130 (361)
T 2oiz_A 53 GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRV-QGLNYDGLFRQTTDGKFIVLQNASPA 130 (361)
T ss_dssp EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBC-CBCCCGGGEEECTTSSEEEEEEESSS
T ss_pred CceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCcccc-ccCCCcceEEECCCCCEEEEECCCCC
Confidence 3678999999877764 4579999996 433344332111100 011 2356999999999999874 5
Q ss_pred CEEEEEEEEecCcceecCCCCCCCcceeeEEEeecee-eccccccceEEEeeeCC-CeEEEEecCCcEEEEecCCccccc
Q 001165 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQ-LPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGA 166 (1134)
Q Consensus 89 g~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~V~~~s~d~-~~llv~t~dg~v~~~~wd~~~~~~ 166 (1134)
++|.+||+.... .+. . +...+. ..+ .+.+++ ..+++.+.+|.+..+.++......
T Consensus 131 ~~v~v~d~~~~~-~~~--------------------~~i~~~~~-~~v-~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 131 TSIGIVDVAKGD-YVE--------------------DVTAAAGC-WSV-IPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp EEEEEEETTTTE-EEE--------------------EEGGGTTE-EEE-EECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred CeEEEEECCCCc-EEE--------------------EEecCCCc-cee-EEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 889999986431 110 0 111110 001 233433 345566667776665554321000
Q ss_pred eeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccc
Q 001165 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE 246 (1134)
Q Consensus 167 ~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~ 246 (1134)
.. ...... +.....+ ..+.++|++..+++.+.+|++++++..........
T Consensus 188 ~~----------~~~~~~-------------------~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 188 SQ----------SRSKQM-------------------FSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp EE----------EECCCC-------------------SCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred ee----------ccccce-------------------EcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 00 000000 0000001 11223566666777777888888876533211100
Q ss_pred ee-------cccccCCCCCeEEEEECCCCCEEEEeee-----------CCeEEEEeccccccceeeeeeeccCcceEEEE
Q 001165 247 FI-------KIDKELGSGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGMREVYYT 308 (1134)
Q Consensus 247 ~~-------~~~~~~~~~~~~~va~spdg~llAsG~~-----------dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~ 308 (1134)
.. ....|.. ....-++|+|+++.+.++.. +++|.+||+. +++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~p-~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~---------------t~~~v~~ 301 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVP-GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK---------------TKQRVAR 301 (361)
T ss_dssp EEESCCHHHHHTTCEE-CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT---------------TTEEEEE
T ss_pred cccccCcccccccccc-CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC---------------CCcEEEE
Confidence 00 0000100 11112689999887766554 3489999998 7888888
Q ss_pred eecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC--eeEEEeccCCCCceeeeEEcCCC
Q 001165 309 FCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 309 l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~--~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
+.. +. +.+++|||||++|++++. ++|.|||..++ +++.++...+ .....++++|+|
T Consensus 302 i~~----~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G-~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPG----RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAA-EASLQVQFHPVG 359 (361)
T ss_dssp EEC----TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSC-SSEEEEEECCCS
T ss_pred Eec----CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCC-CCcEEEEecCCC
Confidence 776 55 899999999999999987 99999999999 9888885543 356778899987
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.40 E-value=6.6e-11 Score=147.61 Aligned_cols=197 Identities=8% Similarity=-0.049 Sum_probs=124.6
Q ss_pred CcccEEEEEEcCCCCeEEEEEcC----------CeEEEEEecc------CCccccceecccccCCCCCeEEEEECCCCCE
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSN----------GQLMSCSVSK------KGLKLAEFIKIDKELGSGDAVCASIAPEQQI 270 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sD----------G~v~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~va~spdg~l 270 (1134)
+...+.+++|||||+.++++..+ .++++|+..+ ..... +.. .+...+..++|||||+.
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---l~~---~~~~~~~~~~~SpDG~~ 201 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE---LSD---DAHRFVTGPRLSPDGRQ 201 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE---SSC---SCSSEECCCEECTTSSE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE---EEe---cCCCcccCceECCCCCE
Confidence 45678899999999999998877 4788888765 22211 110 12234557899999999
Q ss_pred EEEeeeCC--------eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC--c
Q 001165 271 LAVGTRRG--------VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR--G 340 (1134)
Q Consensus 271 lAsG~~dg--------~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg--~ 340 (1134)
||+++.++ +|.+||++..... ++......+ |.+.+..++|||||+.++++..++ .
T Consensus 202 la~~~~~~~~~~~~~~~i~~~d~~~~g~~-----------~~~~~l~~~----~~~~~~~~~~spdg~l~~~~~~~~~~~ 266 (662)
T 3azo_A 202 AVWLAWDHPRMPWEGTELKTARVTEDGRF-----------ADTRTLLGG----PEEAIAQAEWAPDGSLIVATDRTGWWN 266 (662)
T ss_dssp EEEEEECTTCCTTTCEEEEEEEECTTSCE-----------EEEEEEEEE----TTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred EEEEECCCCCCCCCCcEEEEEEECCCCcc-----------cccEEeCCC----CCceEcceEECCCCeEEEEECCCCCeE
Confidence 99888664 7999998721100 022222222 678899999999999888888888 4
Q ss_pred EEEEecCCCeeEEEeccCCCCc--------eeeeEEcCCCCCCcceEEEcc--eeEEE--eCCCceEEEEecCCCccEEE
Q 001165 341 LTVWSVSGCRLMSTIRQISLSS--------ISSPIVKPNQDCKYEPLMSGT--SMMQW--DEYGYRLYAIEEGSSERVLI 408 (1134)
Q Consensus 341 I~vWdv~~~~l~~tl~~h~~~~--------V~sv~~sp~~~~~~~~l~sgs--~i~~W--~~~~~~l~~~~~~h~~~v~~ 408 (1134)
|.+||+.++.......++ ... +.+++|+|++ ..++++. +..+| +..++++ .....|...+..
T Consensus 267 l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~ 340 (662)
T 3azo_A 267 LHRVDPATGAATQLCRRE-EEFAGPLWTPGMRWFAPLANG----LIAVVHGKGAAVLGILDPESGEL-VDAAGPWTEWAA 340 (662)
T ss_dssp EEEECTTTCCEEESSCCS-SBSSCCCCSTTCCSEEECTTS----CEEEEEBSSSCEEEEEETTTTEE-EECCSSCCEEEE
T ss_pred EEEEECCCCceeeccccc-ccccCccccccCceEeEeCCC----EEEEEEEcCccEEEEEECCCCcE-EEecCCCCeEEE
Confidence 555566566654433332 211 4567788887 6666553 56677 7777764 444556666655
Q ss_pred E-ec-CCE-E-EeeecCCcEEeeeee
Q 001165 409 F-SF-GKC-C-LNRGVSGMTYARQVI 430 (1134)
Q Consensus 409 ~-s~-~k~-l-~S~s~d~ti~~w~l~ 430 (1134)
+ ++ ++. + ++.+.+....+|.+.
T Consensus 341 ~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 341 TLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred EEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 5 55 433 2 344555555666543
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.40 E-value=4.8e-12 Score=146.34 Aligned_cols=268 Identities=11% Similarity=-0.041 Sum_probs=146.6
Q ss_pred EEEeecCeEEEEEcCC----eEEEeecCCcceeEEEeecChhhHHhhccee-EEEEcCCceEEEEEeCCCEEEEEEEEec
Q 001165 25 IYFKVNNGLLLIASPC----HIELWSSSQHKVRLGKYKRDSESVQREGENL-QAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~----~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~-~v~wSPDg~~Lav~t~dg~l~lw~l~~~ 99 (1134)
++|||||+.||.+.+. .|.+|+.... ... .... ..+... .+.|||||+.||.++.++.|.+|++..+
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-~~~-~l~~------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-QAV-QLTE------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTT-EEE-ECCC------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCC-cEE-Eeec------CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 5689999998876532 6888888633 211 1111 112222 3889999999999999999999998654
Q ss_pred CcceecCCCCCCCcceeeEEEeeceee-ccccccceE------EEeeeCCCeEEEEec---CCcEEEEecCCccccceec
Q 001165 100 EKSIQIGGKQPSGLFFIKISLVLNEQL-PFAEKGLSV------SNIVSDNKHMLLGLS---DGSLYSISWKGEFYGAFEL 169 (1134)
Q Consensus 100 ~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~V------~~~s~d~~~llv~t~---dg~v~~~~wd~~~~~~~~~ 169 (1134)
........+.. |.++++. .+....... ..++++++.++++.. ++...++.|+.......
T Consensus 113 ~~~~~~~~~~~---------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-- 181 (396)
T 3c5m_A 113 EEQVIYTVDEE---------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE-- 181 (396)
T ss_dssp CEEEEEECCTT---------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE--
T ss_pred CcEEEEecccc---------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE--
Confidence 32111111110 2222211 111000000 124455555444321 22222233332221111
Q ss_pred cccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcC-CCCeEEEEEcCC------eEEEEEeccCCc
Q 001165 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL-PMRLLFVLYSNG------QLMSCSVSKKGL 242 (1134)
Q Consensus 170 ~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp-~~~~la~~~sDG------~v~l~~~~~~~~ 242 (1134)
.+..+...+..+.|+| +++.++.+..++ ++++++..+...
T Consensus 182 ---------------------------------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 182 ---------------------------------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp ---------------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred ---------------------------------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 0112334577899999 788787776543 466666543222
Q ss_pred cccceecccccCCCCCeEEEEECCCCCEEEEeeeC-----CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCC
Q 001165 243 KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT 317 (1134)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-----g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~ 317 (1134)
...... .....+..++|+|+|+.|+.++.+ +.|.+||+. +++.... .. ..
T Consensus 229 ~~l~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~---------------~g~~~~l-~~----~~ 283 (396)
T 3c5m_A 229 RKIKEH-----AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE---------------TLENEEV-MV----MP 283 (396)
T ss_dssp EESSCC-----CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT---------------TCCEEEE-EE----CC
T ss_pred eEeecc-----CCCccccceEECCCCCEEEEEecCCCCccceEEEEECC---------------CCCeEEe-ee----CC
Confidence 111100 001246678999999988877654 459999987 3332211 11 11
Q ss_pred cCeEEEEECC-CCCEEEEEE----------------CCCcEEEEecCCCeeEEEeccCCCC----------ceeeeEEcC
Q 001165 318 GPVSCIAWTP-DNSAFAVGW----------------KSRGLTVWSVSGCRLMSTIRQISLS----------SISSPIVKP 370 (1134)
Q Consensus 318 g~V~~l~fSP-DG~~Lasg~----------------~Dg~I~vWdv~~~~l~~tl~~h~~~----------~V~sv~~sp 370 (1134)
+ .. +.|+| ||+.+++++ .++.|.+||+.++... .+..+... .+.+++|+|
T Consensus 284 ~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~ 360 (396)
T 3c5m_A 284 P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP 360 (396)
T ss_dssp S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEcc
Confidence 2 23 89999 999888765 3468999999877643 33333111 255677888
Q ss_pred CC
Q 001165 371 NQ 372 (1134)
Q Consensus 371 ~~ 372 (1134)
++
T Consensus 361 dg 362 (396)
T 3c5m_A 361 ND 362 (396)
T ss_dssp TS
T ss_pred CC
Confidence 87
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.39 E-value=1.3e-11 Score=156.37 Aligned_cols=253 Identities=9% Similarity=0.069 Sum_probs=159.7
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCc-----CeEEEEECCCCCEE
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG-----PVSCIAWTPDNSAF 332 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g-----~V~~l~fSPDG~~L 332 (1134)
...+++|+|||++++++ ||+|++||+. +++....+.+ |+. ....++|||||++|
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~~~~Spdg~~l 76 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAE---------------YGNSSVFLEN----STFDEFGHSINDYSISPDGQFI 76 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETT---------------TCCEEEEECT----TTTTTCCSCCCEEEECTTSSEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECC---------------CCceEEEEec----hhhhhhcccccceEECCCCCEE
Confidence 34579999999999986 9999999998 5555544444 432 23558999999999
Q ss_pred EEEECC---------CcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc--eeEEEeCCCceEEEEec-
Q 001165 333 AVGWKS---------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEE- 400 (1134)
Q Consensus 333 asg~~D---------g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs--~i~~W~~~~~~l~~~~~- 400 (1134)
+.++.+ +.+.+||+.++++. .+..+ ...+..++||||| +.++.+. .+.+|+..+++...+..
T Consensus 77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~-~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~~~~~~lt~~ 150 (740)
T 4a5s_A 77 LLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI-PNNTQWVTWSPVG----HKLAYVWNNDIYVKIEPNLPSYRITWT 150 (740)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC-CTTEEEEEECSST----TCEEEEETTEEEEESSTTSCCEECCSC
T ss_pred EEEECCeeeEEEccceEEEEEECCCCcEE-EcccC-CCcceeeEECCCC----CEEEEEECCeEEEEECCCCceEEEcCC
Confidence 999886 45669999998754 35444 4579999999999 7777655 89999998887655432
Q ss_pred CCCccE-------------------EEEec-CCEEEeeecCCc-EEeeeeeeCCC------e--EEEe--ecCCCccc--
Q 001165 401 GSSERV-------------------LIFSF-GKCCLNRGVSGM-TYARQVIYGED------R--LLVV--QSEDTDEL-- 447 (1134)
Q Consensus 401 ~h~~~v-------------------~~~s~-~k~l~S~s~d~t-i~~w~l~~~~~------~--l~l~--~g~~~~~~-- 447 (1134)
++...+ ..++| |+.++..+.|.+ +..|++..... . .+.+ .|...+..
T Consensus 151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l 230 (740)
T 4a5s_A 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF 230 (740)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEE
Confidence 222222 56888 999988876655 77777542211 0 0001 01111111
Q ss_pred -cccc-------------cccceeeccCCCceEEEEEcCCCCEEEEEeCCC----eE-EEEccCCc--EEEe--CC---c
Q 001165 448 -KILH-------------LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG----LI-LYDIRQKK--WRVF--GD---I 501 (1134)
Q Consensus 448 -~w~~-------------~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG----~i-lwd~~sg~--Wk~F--~~---~ 501 (1134)
.|.. +..|..+.+|...+..++|||||+.++....++ .+ +||+.+++ |..- .. +
T Consensus 231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 1211 111112224777799999999999777654433 67 99999886 2211 10 1
Q ss_pred cceeeeE---EEEEEeeCC--EEE-EEEEecCCCeeEEEEEeCC
Q 001165 502 TQEQKIQ---SKGLLWLGK--IIV-VCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 502 ~~e~~~~---v~gl~W~~~--~lv-~~~~~~~~~~~eLrly~~~ 539 (1134)
.++.-+. .....|.++ .++ .. .+.++..+|.+|+.+
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~--s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKII--SNEEGYRHICYFQID 352 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEE--ECTTSCEEEEEEETT
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEE--EcCCCceEEEEEECC
Confidence 1111011 124567644 444 33 345667888888874
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.38 E-value=4.4e-11 Score=149.19 Aligned_cols=240 Identities=11% Similarity=-0.050 Sum_probs=144.5
Q ss_pred cCCCCe-EEEEEc-CCeEEEEEec--c-CCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC----------CeEE
Q 001165 217 CLPMRL-LFVLYS-NGQLMSCSVS--K-KGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR----------GVVE 281 (1134)
Q Consensus 217 sp~~~~-la~~~s-DG~v~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d----------g~V~ 281 (1134)
|||++. ++.+.. ++++++++.. + ........... -.+...+.+++|||||+.||+++.+ .+|.
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSA--VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCC--STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCcc--CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 599998 776543 4566666554 2 22222111100 0012356789999999999998877 5899
Q ss_pred EEeccccccceeeeeeeccCcceEEEEee-cccCCCCcCeEEEEECCCCCEEEEEECCC--------cEEEEecC-CC--
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFC-RYSMDDTGPVSCIAWTPDNSAFAVGWKSR--------GLTVWSVS-GC-- 349 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~-~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg--------~I~vWdv~-~~-- 349 (1134)
+|+++...... .++. ..+. . +.+.+..++|||||+.||.++.++ .|.+||+. ++
T Consensus 165 ~~~~~~~~~~~---------~~~~-~~l~~~----~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 165 AVPLDGSAAAD---------RSAV-RELSDD----AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp EEETTSTTTTC---------GGGS-EESSCS----CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred EEECCCCcccc---------CCce-eEEEec----CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 99987210000 0222 1222 2 556788899999999999877553 79999998 46
Q ss_pred -eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-----eeEEEeCCCceEEEEecCCCcc--------E--EEEec-C
Q 001165 350 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQWDEYGYRLYAIEEGSSER--------V--LIFSF-G 412 (1134)
Q Consensus 350 -~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-----~i~~W~~~~~~l~~~~~~h~~~--------v--~~~s~-~ 412 (1134)
.......++ ...+.+++|+||+ +.+.++. .+..|+..++++.....++... + +.+++ +
T Consensus 231 ~~~~~l~~~~-~~~~~~~~~spdg----~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 231 ADTRTLLGGP-EEAIAQAEWAPDG----SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp EEEEEEEEET-TBCEEEEEECTTS----CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred cccEEeCCCC-CceEcceEECCCC----eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 333333333 5678999999999 6555443 5677777777765544333211 2 56666 7
Q ss_pred CEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEE-EEcCCCCEEEEEeCCCeE-EE--
Q 001165 413 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV-AASKDGMFLAVAGLHGLI-LY-- 488 (1134)
Q Consensus 413 k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~v-a~SpdG~~LAsgg~dG~i-lw-- 488 (1134)
+.+++++. +++++|.+...... ...+..|...+..+ ++++++-.+++++.+... +|
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-------------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-------------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-------------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 77788888 89999965432221 23344556667666 554444444455555544 44
Q ss_pred EccCCcEEE
Q 001165 489 DIRQKKWRV 497 (1134)
Q Consensus 489 d~~sg~Wk~ 497 (1134)
|+.+++.+.
T Consensus 366 d~~~g~~~~ 374 (662)
T 3azo_A 366 DTVTGRART 374 (662)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCceEE
Confidence 555665443
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.32 E-value=4.8e-10 Score=127.38 Aligned_cols=246 Identities=9% Similarity=-0.007 Sum_probs=158.8
Q ss_pred cccEEEEEEcCCCCeEEEEEcC------------------------CeEEEEEeccCCccccceecccccCCCCCeEEEE
Q 001165 208 SSAIIWLELCLPMRLLFVLYSN------------------------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCAS 263 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sD------------------------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va 263 (1134)
-+.+.+|+++|+|+++++...+ |++++|+........ .... .....+..++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~---~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ--SSGK---NLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE--EECT---TTCSSEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe--ccCC---CccCCceEEE
Confidence 4678999999999998877766 367777664332211 0000 1124678999
Q ss_pred ECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEE-CCCcE
Q 001165 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGW-KSRGL 341 (1134)
Q Consensus 264 ~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~-~Dg~I 341 (1134)
++|+|+++++.+.++.|++|+.+........+.-. +. .+...++......|+++| +|+.+++.+ .++.|
T Consensus 98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~----~~-----~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS----MQ-----PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT----TB-----CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc----CC-----CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 99999999999999999999986321111111100 00 001123555789999999 888888886 68999
Q ss_pred EEEecCCCeeEEEeccCC---------CCceeeeEEcCC-CCCCcceEEEcc---eeEEEeCCCceEEEEec--CCCccE
Q 001165 342 TVWSVSGCRLMSTIRQIS---------LSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV 406 (1134)
Q Consensus 342 ~vWdv~~~~l~~tl~~h~---------~~~V~sv~~sp~-~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~--~h~~~v 406 (1134)
++|+.. +..+.++...+ .....+++++|+ + ..+++.. ++++|+.++++++.... ++...+
T Consensus 169 ~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g----~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 169 VQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD----QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV 243 (329)
T ss_dssp EEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred EEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC----EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence 999965 45566664321 234789999998 5 6666543 89999999777776653 233344
Q ss_pred --EEEecCCEEEe-------eecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceee---ccCCCceEEEEEcCCC
Q 001165 407 --LIFSFGKCCLN-------RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY---ISQNWPVQHVAASKDG 474 (1134)
Q Consensus 407 --~~~s~~k~l~S-------~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~---~~h~~~V~~va~SpdG 474 (1134)
+.++++..+.+ ...+.++++|+...++. ...+ .++......++++|||
T Consensus 244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--------------------~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--------------------IDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE--------------------EEEECCSSSCCSSEEEEEECTTS
T ss_pred ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--------------------EEEEcCCCCccCCeeEEEECCCC
Confidence 34455333322 22344677777544432 1111 2344557899999999
Q ss_pred CEEEEEeCCCeE-EEEccC
Q 001165 475 MFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 475 ~~LAsgg~dG~i-lwd~~s 492 (1134)
+.+++...++.| .|++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEESSSCCEEEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCc
Confidence 877777888899 998754
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.31 E-value=1.1e-09 Score=121.16 Aligned_cols=238 Identities=10% Similarity=0.026 Sum_probs=157.2
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEE-CCCCCEEEEeee-CCeEEEEe
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI-APEQQILAVGTR-RGVVELYD 284 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~-spdg~llAsG~~-dg~V~lwd 284 (1134)
+-..+.+++++++++++++...++++.+|+........... ....-.+...+.++++ .+++++++++.. ++.|.+|+
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~-~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGE-CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECC-BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecc-cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 34567889999999988877888999998865321111000 0000001245789999 588888877654 89999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc-CCCCce
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSI 363 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~-h~~~~V 363 (1134)
.+ ++.+.++.. .+...+.+++++|+|+.+++...++.|.+||..+ ....++.. .+...+
T Consensus 107 ~~----------------g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 107 QY----------------GQFVRKFGA---TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFP 166 (286)
T ss_dssp TT----------------SCEEEEECT---TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSE
T ss_pred CC----------------CcEEEEecC---ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCc
Confidence 43 333333321 2445789999999999888888889999999765 44555532 224568
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC--CccE--EEEec-CCEEEeeecCC-cEEeeeeeeCCC
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV--LIFSF-GKCCLNRGVSG-MTYARQVIYGED 434 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h--~~~v--~~~s~-~k~l~S~s~d~-ti~~w~l~~~~~ 434 (1134)
.+++++|++ +.+++.. .+.+|+..+..+ .....+ .... +++++ ++..++...++ .+.+|+. .+..
T Consensus 167 ~~i~~~~~g----~l~v~~~~~~~i~~~~~~g~~~-~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~ 240 (286)
T 1q7f_A 167 NGVVVNDKQ----EIFISDNRAHCVKVFNYEGQYL-RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL 240 (286)
T ss_dssp EEEEECSSS----EEEEEEGGGTEEEEEETTCCEE-EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE
T ss_pred EEEEECCCC----CEEEEECCCCEEEEEcCCCCEE-EEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE
Confidence 999999998 7777643 899999876543 333222 2333 56666 77777777775 8888873 2221
Q ss_pred eEEEeecCCCccccccccccceeeccC--CCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 435 RLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 435 ~l~l~~g~~~~~~~w~~~~~~~~~~~h--~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
+ ..+..+ ...+..++++|+|+.+++ +.++.+ +|+...
T Consensus 241 -~-------------------~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 241 -I-------------------SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp -E-------------------EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred -E-------------------EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 1 112211 223678999999986666 678999 998754
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.31 E-value=4e-11 Score=138.59 Aligned_cols=233 Identities=10% Similarity=0.053 Sum_probs=140.5
Q ss_pred EEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEE----------------EEECCCCCEEEEe---
Q 001165 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC----------------ASIAPEQQILAVG--- 274 (1134)
Q Consensus 214 i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------va~spdg~llAsG--- 274 (1134)
+.|+|+++.++.+..++.+++|+..+........... .|.. +... ++++|+++.++++
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~--~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE-EWKG--YGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT-TEEE--EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc-ccCC--CCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 5789999999999999999999876543221111000 0100 0011 3568888877765
Q ss_pred --eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECC------CcEEEEe
Q 001165 275 --TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWS 345 (1134)
Q Consensus 275 --~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~D------g~I~vWd 345 (1134)
..++.|.+||++ +++..... . +...+..+.||| ||+.|+..+.+ ..|.+|+
T Consensus 163 ~~~~~~~l~~~d~~---------------~g~~~~~~-~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (396)
T 3c5m_A 163 HTNPTCRLIKVDIE---------------TGELEVIH-Q----DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN 222 (396)
T ss_dssp HTCCCEEEEEEETT---------------TCCEEEEE-E----ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred cCCCcceEEEEECC---------------CCcEEeec-c----CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence 356688888887 44433222 2 567789999999 89988777654 3588888
Q ss_pred cCCCeeEEEeccCC-CCceeeeEEcCCCCCCcceEEEcc--------eeEEEeCCCceEEEEecCCCccEEEEec--CCE
Q 001165 346 VSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKC 414 (1134)
Q Consensus 346 v~~~~l~~tl~~h~-~~~V~sv~~sp~~~~~~~~l~sgs--------~i~~W~~~~~~l~~~~~~h~~~v~~~s~--~k~ 414 (1134)
+.++... .+..+. ...+..++|+|++ +.++..+ .+.+|++.+++........... ..+++ ++.
T Consensus 223 ~~~~~~~-~l~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~ 296 (396)
T 3c5m_A 223 EDGSNVR-KIKEHAEGESCTHEFWIPDG----SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSL 296 (396)
T ss_dssp TTSCCCE-ESSCCCTTEEEEEEEECTTS----SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSE
T ss_pred CCCCcee-EeeccCCCccccceEECCCC----CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCce
Confidence 8776533 332221 2357889999998 6554432 3889999887654443221111 55665 666
Q ss_pred EEeee----------------cCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCC-----------ceEE
Q 001165 415 CLNRG----------------VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----------PVQH 467 (1134)
Q Consensus 415 l~S~s----------------~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~-----------~V~~ 467 (1134)
++..+ .+..+.+|++..+... .+..+.. .+..
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~~~~~~~~~~~~~~ 355 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---------------------KLCKHSTSWDVLDGDRQITHPH 355 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBCC---------------------EEEECCCCCCCBTTBSSTTCCC
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCceE---------------------EccCCCCccccccccccCCCCC
Confidence 66543 2345666665433321 1222222 2456
Q ss_pred EEEcCCCCEEEEEeC-CCeE-EEE--ccCCcEE
Q 001165 468 VAASKDGMFLAVAGL-HGLI-LYD--IRQKKWR 496 (1134)
Q Consensus 468 va~SpdG~~LAsgg~-dG~i-lwd--~~sg~Wk 496 (1134)
.+|||||++|+.++. +|.. +|. +.++.+.
T Consensus 356 ~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 356 PSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred ceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 789999999987765 5554 554 4555444
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.27 E-value=1.4e-09 Score=120.34 Aligned_cols=241 Identities=10% Similarity=0.066 Sum_probs=149.5
Q ss_pred cceeEEEEcCCceEEEEEeCCCEEEEEEEEecCccee-cCCCCCCCcceeeEEEeeceeeccccccceEEEeee--CCCe
Q 001165 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKH 144 (1134)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~--d~~~ 144 (1134)
.....++++|||+.+++.+.++.|.+|+.+.. ... ...... ..+....+.+++. .++.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~-----------------~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGK-----------------RDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSS-----------------STTCBSSEEEEEEETTTTE
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCC-----------------CcccccCceEEEEEcCCCe
Confidence 44678999999998888888999999987521 111 100000 0000012233333 3456
Q ss_pred EEEEec--CCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCe
Q 001165 145 MLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1134)
Q Consensus 145 llv~t~--dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~ 222 (1134)
++++.. ++.|.+++-++.....+ ...+...+.+++++|++++
T Consensus 91 l~v~~~~~~~~i~~~d~~g~~~~~~------------------------------------~~~~~~~~~~i~~~~~g~l 134 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYNQYGQFVRKF------------------------------------GATILQHPRGVTVDNKGRI 134 (286)
T ss_dssp EEEEECGGGCEEEEECTTSCEEEEE------------------------------------CTTTCSCEEEEEECTTSCE
T ss_pred EEEEcCCCCCEEEEECCCCcEEEEe------------------------------------cCccCCCceEEEEeCCCCE
Confidence 677663 67777654322211100 0112345788999999997
Q ss_pred EEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCc
Q 001165 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGM 302 (1134)
Q Consensus 223 la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~ 302 (1134)
+++...++++.+|+..+.... .... ..+...+.+++++|+|+++++.+.++.|++|+.+
T Consensus 135 ~v~~~~~~~i~~~~~~g~~~~---~~~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---------------- 193 (286)
T 1q7f_A 135 IVVECKVMRVIIFDQNGNVLH---KFGC--SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE---------------- 193 (286)
T ss_dssp EEEETTTTEEEEECTTSCEEE---EEEC--TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT----------------
T ss_pred EEEECCCCEEEEEcCCCCEEE---EeCC--CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC----------------
Confidence 777777889999875432111 1110 0122467899999999998888889999999975
Q ss_pred ceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC-cEEEEecCCCeeEEEeccCC-CCceeeeEEcCCCCCCcceEE
Q 001165 303 REVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLM 380 (1134)
Q Consensus 303 ~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg-~I~vWdv~~~~l~~tl~~h~-~~~V~sv~~sp~~~~~~~~l~ 380 (1134)
++.+.++.. .++...+..|+++|||+.+++.+.++ .|.+|+..+ ..+.++..+. ...+.+++++|++ +.++
T Consensus 194 g~~~~~~~~--~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g----~l~v 266 (286)
T 1q7f_A 194 GQYLRQIGG--EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDG----SVVL 266 (286)
T ss_dssp CCEEEEESC--TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTT----EEEE
T ss_pred CCEEEEEcc--CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCC----cEEE
Confidence 222333321 12346789999999999999888876 999999765 4555554431 2246678888887 6665
Q ss_pred Ecc--eeEEEeCC
Q 001165 381 SGT--SMMQWDEY 391 (1134)
Q Consensus 381 sgs--~i~~W~~~ 391 (1134)
+.. ++.+|+..
T Consensus 267 s~~~~~v~v~~~~ 279 (286)
T 1q7f_A 267 ASKDYRLYIYRYV 279 (286)
T ss_dssp EETTTEEEEEECS
T ss_pred ECCCCeEEEEEcc
Confidence 532 66677653
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.26 E-value=2e-09 Score=122.19 Aligned_cols=239 Identities=12% Similarity=0.072 Sum_probs=145.9
Q ss_pred ccEEEEEEcCCCCeEEEEEc---------CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC--
Q 001165 209 SAIIWLELCLPMRLLFVLYS---------NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR-- 277 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~s---------DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d-- 277 (1134)
..+.+..+ +|+.++.... ++.+++|+..+..... + ..+.+++|||||+.||.++.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l--------~~~~~~~~SpDg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I--------ENATMPRISPDGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E--------ESCEEEEECTTSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c--------ccCCCeEECCCCCEEEEEEeccC
Confidence 34566666 8887777532 4567777665432211 1 346789999999999988764
Q ss_pred -Ce--EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC----------------
Q 001165 278 -GV--VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------- 338 (1134)
Q Consensus 278 -g~--V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D---------------- 338 (1134)
+. |.+|+++ +++...... +.+ +.+++|||||+.|+.++.+
T Consensus 82 ~~~~~l~~~~~~---------------~g~~~~l~~-----~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 82 KKVSEIWVADLE---------------TLSSKKILE-----AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp TTEEEEEEEETT---------------TTEEEEEEE-----ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred CCcceEEEEECC---------------CCceEEEEc-----CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence 44 6666666 444333222 234 9999999999999888642
Q ss_pred -----------CcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----------eeEEEeCCCceEEE
Q 001165 339 -----------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----------SMMQWDEYGYRLYA 397 (1134)
Q Consensus 339 -----------g~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----------~i~~W~~~~~~l~~ 397 (1134)
..|.+||+.++.....+.. . .+..++|+|++ .+.++. ...+|...++++..
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-----~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 212 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-----IVVNVPHREIIPQYFKFWDIYIWEDGKEEK 212 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-----EEEEEECCCSSCCSSCCEEEEEEETTEEEE
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-----EEEEEecccccccccccccEEEeCCCceEE
Confidence 5689999988876455544 2 67888999986 222221 12333333555443
Q ss_pred EecCCCccEEEEec-CCEEEeeecCC--------cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEE-
Q 001165 398 IEEGSSERVLIFSF-GKCCLNRGVSG--------MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH- 467 (1134)
Q Consensus 398 ~~~~h~~~v~~~s~-~k~l~S~s~d~--------ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~- 467 (1134)
...+ ..+..+++ |+.++..+.+. .+.+|+ +... .....++...+..
T Consensus 213 l~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d---~~~~-------------------~~l~~~~~~~~~~~ 268 (347)
T 2gop_A 213 MFEK--VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD---GKEV-------------------MGILDEVDRGVGQA 268 (347)
T ss_dssp EEEE--ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC---SSCE-------------------EESSTTCCSEEEEE
T ss_pred eccC--cceeeECCCCCEEEEEEccccCCccccceEEEEC---CCce-------------------EeccccCCcccCCc
Confidence 3322 34444577 77776655432 233333 2210 1112345667886
Q ss_pred EEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEE
Q 001165 468 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 521 (1134)
Q Consensus 468 va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~ 521 (1134)
++|+ || .+++++.+|.+ +| +.+++...... . ...+.++.|.+ .+++
T Consensus 269 ~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~--~--~~~v~~~~~s~-~~~~ 315 (347)
T 2gop_A 269 KIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK--G--RHWIMGFDVDE-IVVY 315 (347)
T ss_dssp EEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC--S--SSEEEEEEESS-SEEE
T ss_pred cEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec--C--CCeEEeeeeeC-cEEE
Confidence 8999 99 99999999999 99 87665433211 1 23466778877 4443
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.24 E-value=2.6e-09 Score=121.38 Aligned_cols=224 Identities=9% Similarity=0.028 Sum_probs=139.9
Q ss_pred ccEEEEEEcCCCCeEEEEEcC---Ce--EEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC------
Q 001165 209 SAIIWLELCLPMRLLFVLYSN---GQ--LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR------ 277 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sD---G~--v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d------ 277 (1134)
..+.++.|||+|+.++.+..+ +. +++++..+..... +.. ... +.+++|+|||+.||+++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~---l~~----~~~-~~~~~wspdg~~l~~~~~~~~~~~~ 130 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK---ILE----AKN-IRSLEWNEDSRKLLIVGFKRREDED 130 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE---EEE----ESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE---EEc----CCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence 346788999999999988765 44 5555544322211 111 113 7889999999999988753
Q ss_pred ---------------------CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 278 ---------------------GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 278 ---------------------g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..|.+|++. +++.+..+.. . .+..++||||| .++++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~---------------~~~~~~~l~~-----~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTE---------------SEEVIEEFEK-----P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp ------CCCC---------CEEEEEEEETT---------------TTEEEEEEEE-----E-TTCEEEEETTE-EEEEEE
T ss_pred cEEEcccceeecCcccccCccceEEEEECC---------------CCeEEeeecC-----C-CcccccCCCCe-EEEEEe
Confidence 467788877 5554344432 1 67889999999 888776
Q ss_pred CCC-------cEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-----------eeEEEeCCCceEEEE
Q 001165 337 KSR-------GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----------SMMQWDEYGYRLYAI 398 (1134)
Q Consensus 337 ~Dg-------~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-----------~i~~W~~~~~~l~~~ 398 (1134)
.++ ...||.+.++... .+..+ ..+.++ +|++ +.++.++ .+.+|+ +++....
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~~~-~l~~~--~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGKEE-KMFEK--VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTEEE-EEEEE--ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred cccccccccccccEEEeCCCceE-EeccC--cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC--CCceEec
Confidence 552 4456555455433 33322 234444 8888 5554322 466677 5565555
Q ss_pred ecCCCccEEE-Eec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCE
Q 001165 399 EEGSSERVLI-FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF 476 (1134)
Q Consensus 399 ~~~h~~~v~~-~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~ 476 (1134)
..++...+.. +.+ ...+++++.++..++| +.. .. +.....+...|.+++++| +.
T Consensus 258 ~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~-g~--------------------~~~~~~~~~~v~~~~~s~--~~ 313 (347)
T 2gop_A 258 LDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWD-GE--------------------IKPIAKGRHWIMGFDVDE--IV 313 (347)
T ss_dssp STTCCSEEEEEEEETTEEEEEEEETTEEEEE-EES-SS--------------------EEEEECSSSEEEEEEESS--SE
T ss_pred cccCCcccCCccEEcCcEEEEEecCCcEEEE-EcC-Cc--------------------eEEEecCCCeEEeeeeeC--cE
Confidence 5555555532 333 3367788889999999 762 22 122334466789999999 67
Q ss_pred EEEEeCCCeE--EEEccCCcEEEe
Q 001165 477 LAVAGLHGLI--LYDIRQKKWRVF 498 (1134)
Q Consensus 477 LAsgg~dG~i--lwd~~sg~Wk~F 498 (1134)
+++++.++.. +|.+. ++.+.+
T Consensus 314 ~~~~~~~~~~~~l~~~~-g~~~~l 336 (347)
T 2gop_A 314 VYLKETATRLRELFTWD-GEEKQL 336 (347)
T ss_dssp EEEEECSSSCCEEEEES-SSEEEC
T ss_pred EEEEcCCCChHHheEeC-CcEEEe
Confidence 7777777654 78776 554443
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.23 E-value=6.7e-10 Score=139.72 Aligned_cols=246 Identities=10% Similarity=-0.052 Sum_probs=154.2
Q ss_pred CCcccEEEEEEcCCCCeEEEEEc-C----CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe-
Q 001165 206 PISSAIIWLELCLPMRLLFVLYS-N----GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV- 279 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~s-D----G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~- 279 (1134)
++...+.+++|||||+.+|.+.+ + .++++|++.+........+. + .....++|+|||+.|+.++.|++
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-----~-~~~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-----G-GKYATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-----C-CTTCCCEECTTSSEEEEEECCCCT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-----c-ccccceEEecCCCEEEEEEecCCC
Confidence 34567889999999999987654 2 46999998765432111110 1 11257899999999999988776
Q ss_pred ------------EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC----cEEE
Q 001165 280 ------------VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTV 343 (1134)
Q Consensus 280 ------------V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg----~I~v 343 (1134)
|++|++...... ..++.... .|...+..++|||||++|+.++.++ .|.+
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~-----------~~lv~~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSK-----------DTVVHERT----GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGG-----------CEEEECCC----CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchh-----------ceEEEecC----CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 999998732210 11222222 2667899999999999998887666 6777
Q ss_pred EecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEE-Ec-----ceeEEEeCCCceE---EEEecCC-CccEEEEec--
Q 001165 344 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SG-----TSMMQWDEYGYRL---YAIEEGS-SERVLIFSF-- 411 (1134)
Q Consensus 344 Wdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~-sg-----s~i~~W~~~~~~l---~~~~~~h-~~~v~~~s~-- 411 (1134)
|+..++.. ..+..+ ...+....+ +++ ..++ +. .++..|++.+++. ......+ ...+..+.+
T Consensus 257 ~~~~~~~~-~~l~~~-~~~~~~~~~-~~g----~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 329 (695)
T 2bkl_A 257 KRPGEKDF-RLLVKG-VGAKYEVHA-WKD----RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG 329 (695)
T ss_dssp ECTTCSSC-EEEEEC-SSCCEEEEE-ETT----EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEET
T ss_pred EcCCCCce-EEeecC-CCceEEEEe-cCC----cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEEC
Confidence 77655543 334333 234455555 565 4222 22 2788999877642 2222233 334544444
Q ss_pred CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccC-CCceEEEEEcCCCCEEEEEe----CCCeE
Q 001165 412 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG----LHGLI 486 (1134)
Q Consensus 412 ~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h-~~~V~~va~SpdG~~LAsgg----~dG~i 486 (1134)
++.+++...|+..++|.+...... ...+..+ ...|..+++||||+.++... ..+.+
T Consensus 330 ~~lv~~~~~dg~~~l~~~~~~g~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 330 GHLSLEYLKDATSEVRVATLKGKP-------------------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp TEEEEEEEETTEEEEEEEETTCCE-------------------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred CEEEEEEEECCEEEEEEEeCCCCe-------------------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 667788889999999876532221 1122222 45577788999998887443 34678
Q ss_pred -EEEccCCcEEEe
Q 001165 487 -LYDIRQKKWRVF 498 (1134)
Q Consensus 487 -lwd~~sg~Wk~F 498 (1134)
+||+.+++.+.+
T Consensus 391 ~~~d~~~g~~~~l 403 (695)
T 2bkl_A 391 YKTSVSTGKSELW 403 (695)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEECCCCcEEEE
Confidence 899988865544
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.19 E-value=2.6e-09 Score=123.17 Aligned_cols=233 Identities=8% Similarity=0.010 Sum_probs=136.9
Q ss_pred EEEEcCCCCeEEEEEc----------CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee--CCeE
Q 001165 213 WLELCLPMRLLFVLYS----------NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR--RGVV 280 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~s----------DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~--dg~V 280 (1134)
.++|+|+++.++++.. ++.+.+|+.........-........+......++|+|||+++.++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 7999999999998863 667999887543321111111000011134567899999999998875 5899
Q ss_pred EEEeccccccceeeeeeeccCcceEEEE-eecccCCCCcCeEEEEECCCC-CEEEEEECCCcEEEEecCC-CeeEEEe--
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYT-FCRYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG-CRLMSTI-- 355 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~-l~~~~~~h~g~V~~l~fSPDG-~~Lasg~~Dg~I~vWdv~~-~~l~~tl-- 355 (1134)
.+||++ +++.+.+ +.. +....+.+.|+| ..+++.+.||.+.+|+... ++.....
T Consensus 134 ~v~d~~---------------~~~~~~~~i~~------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~ 192 (361)
T 2oiz_A 134 GIVDVA---------------KGDYVEDVTAA------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS 192 (361)
T ss_dssp EEEETT---------------TTEEEEEEGGG------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC
T ss_pred EEEECC---------------CCcEEEEEecC------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc
Confidence 999998 5666555 321 122335678877 6778888999999998854 4433221
Q ss_pred ----ccCCCCceeeeEEcCCCCCCcceEEEc-ceeEEEeCCCceEE--EEec------------CCCccEEEEec-CCEE
Q 001165 356 ----RQISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLY--AIEE------------GSSERVLIFSF-GKCC 415 (1134)
Q Consensus 356 ----~~h~~~~V~sv~~sp~~~~~~~~l~sg-s~i~~W~~~~~~l~--~~~~------------~h~~~v~~~s~-~k~l 415 (1134)
..+ ..+ ..+.++|++. ...+.+- .++.+|+..+.... .... ......+++++ ++.+
T Consensus 193 ~~~~~~~-~~~-~~~~~~~~g~--~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l 268 (361)
T 2oiz_A 193 KQMFSVK-DDP-IFIAPALDKD--KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM 268 (361)
T ss_dssp CCCSCTT-TSC-BCSCCEECSS--EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred cceEcCC-CCc-eEEEecccCC--EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence 111 111 1222334431 0111211 26777776544321 1110 01112356777 4554
Q ss_pred Eeeec-----------CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 416 LNRGV-----------SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 416 ~S~s~-----------d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
...+. ++++.+||..+++. ..++..+. +..++|||||++|++++. +
T Consensus 269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~--------------------v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--------------------VARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp EEEEESSCCTTCTTCCCSEEEEEETTTTEE--------------------EEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred EEEEccCCCcccccCCCceEEEEECCCCcE--------------------EEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 43322 23577777544322 33444444 779999999999999987 8
Q ss_pred eE-EEEccCC
Q 001165 485 LI-LYDIRQK 493 (1134)
Q Consensus 485 ~i-lwd~~sg 493 (1134)
.+ +||..++
T Consensus 326 ~v~v~D~~t~ 335 (361)
T 2oiz_A 326 NVNVYDISQP 335 (361)
T ss_dssp CEEEEECSSS
T ss_pred eEEEEECCCC
Confidence 88 9999988
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.18 E-value=1.4e-09 Score=123.60 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=108.1
Q ss_pred cccEEEEEEcC-CCCeEEEEE-cCCeEEEEEeccCCccccceeccc---ccCCCCCeEEEEECCC-CCEEEEeeeCCeEE
Q 001165 208 SSAIIWLELCL-PMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAVCASIAPE-QQILAVGTRRGVVE 281 (1134)
Q Consensus 208 ~~~V~~i~fsp-~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~va~spd-g~llAsG~~dg~V~ 281 (1134)
-.....|+++| +++++++.+ .++++..|+.++............ .......+..++++|+ +.++++...++.|+
T Consensus 142 ~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 142 FCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ 221 (329)
T ss_dssp CSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence 34578999999 677777764 689999987543211111000000 0001134789999998 88888888999999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEE-------EECCCcEEEEecCCCeeEEE
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAV-------GWKSRGLTVWSVSGCRLMST 354 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Las-------g~~Dg~I~vWdv~~~~l~~t 354 (1134)
+|+.+ +++.+.++.. ..+...+.+++|+| |..+++ .+.++.|++|+..+++++.+
T Consensus 222 ~~~~~---------------~G~~~~~~~~--~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 222 CFKTD---------------TKEFVREIKH--ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp EEETT---------------TCCEEEEECC--TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred EEECC---------------CCcEEEEEec--cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 99998 5666666532 23567789999999 444444 34455999999988888888
Q ss_pred ecc--CCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 355 IRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 355 l~~--h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
+.. .+.....+++++|++ ..+++.. ++..|+++
T Consensus 284 ~~~~~~~~~~p~~ia~~~dG----~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 284 FKPVRKHFDMPHDIVASEDG----TVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCSSSCCSSEEEEEECTTS----EEEEEESSSCCEEEEEEE
T ss_pred EcCCCCccCCeeEEEECCCC----CEEEEECCCCEEEEEeCC
Confidence 741 225568889998887 6666543 56666653
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.18 E-value=1.1e-09 Score=138.03 Aligned_cols=240 Identities=8% Similarity=-0.065 Sum_probs=152.2
Q ss_pred CcccEEEEEEcCCCCeEEEEEcCC-----eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe--
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSNG-----QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV-- 279 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sDG-----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~-- 279 (1134)
+...+..++|||||+.+|.+.+++ ++++|++.+....... .. ...+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~------~~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LE------RVKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EE------EECSCCEEECTTSSEEEEEECCCCSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-cc------CcccceEEEEeCCCEEEEEEECCccc
Confidence 344688999999999999887754 7899888654432211 11 012457899999999999988766
Q ss_pred --------------EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-----CCc
Q 001165 280 --------------VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRG 340 (1134)
Q Consensus 280 --------------V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-----Dg~ 340 (1134)
|.+|++...... ..++.+. ..|...+..++|||||++|+.++. +..
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~-----------~~~v~~~----~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSE-----------DILCAEF----PDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGG-----------CEEEECC----TTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred cccccccccCCCCEEEEEECCCCccc-----------ceEEecc----CCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 999998732110 0122111 125667889999999999988765 568
Q ss_pred EEEEecCC------Ce-eEEEeccCCCCceeeeEEcCCCCCCcceEE--Ecc-----eeEEEeCCCce--EEEEecCCCc
Q 001165 341 LTVWSVSG------CR-LMSTIRQISLSSISSPIVKPNQDCKYEPLM--SGT-----SMMQWDEYGYR--LYAIEEGSSE 404 (1134)
Q Consensus 341 I~vWdv~~------~~-l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~--sgs-----~i~~W~~~~~~--l~~~~~~h~~ 404 (1134)
|.+||+.+ +. ....+..+ ...+.. .++|++ ..++ +.. .+..|+..+++ .+.....|..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~-~~~~~~-~~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDN-FEGEYD-YVTNEG----TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECS-SSSCEE-EEEEET----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred EEEEECcccccccCCccceEEeeCC-CCcEEE-EEeccC----CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 99999975 42 34455444 333433 477776 4333 211 68889988763 1222223333
Q ss_pred --cE--EEEec-CCEEEeeecCCcEEeeeee--eCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEE
Q 001165 405 --RV--LIFSF-GKCCLNRGVSGMTYARQVI--YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 477 (1134)
Q Consensus 405 --~v--~~~s~-~k~l~S~s~d~ti~~w~l~--~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~L 477 (1134)
.+ +.++. ++.+++...++..++|.+. .+.. ...+..+...|..++++|+|+.+
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~--------------------~~~l~~~~~~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL--------------------LKIFPLEVGSVVGYSGQKKDTEI 394 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE--------------------EEEECCCSSEEEEEECCTTCSEE
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE--------------------EEecCCCCceEEEEecCCCCCEE
Confidence 34 34443 5567788888877666543 2221 12233456678889999999877
Q ss_pred EEEe----CCCeE-EEEccCCc
Q 001165 478 AVAG----LHGLI-LYDIRQKK 494 (1134)
Q Consensus 478 Asgg----~dG~i-lwd~~sg~ 494 (1134)
+.+. ..+.+ .||+.+++
T Consensus 395 ~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 395 FYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEeCCCCCCEEEEEECCCCc
Confidence 7443 24677 88988876
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.18 E-value=1.7e-09 Score=120.34 Aligned_cols=234 Identities=9% Similarity=-0.065 Sum_probs=148.4
Q ss_pred CcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 207 ISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
......+++|+|+++ ++++...+|.++.|+.... .. ... .....+.+++++|+|+++++...++.|.+||.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---~~~----~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---PEM----HPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---EEE----SSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---EEE----CCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 344567899999998 6666777899999887653 21 111 12356789999999999888777889999998
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-----------------CCcEEEEecCC
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-----------------SRGLTVWSVSG 348 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-----------------Dg~I~vWdv~~ 348 (1134)
+ +++...............+.+++++|||+.+++.+. .+.|..++..
T Consensus 98 ~---------------~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 98 P---------------GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp T---------------TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred C---------------CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 6 222211111000001235678999999999887321 2345555554
Q ss_pred CeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC-CceE---EEEecCCCccE--EEEec-CCEEEee
Q 001165 349 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRL---YAIEEGSSERV--LIFSF-GKCCLNR 418 (1134)
Q Consensus 349 ~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~-~~~l---~~~~~~h~~~v--~~~s~-~k~l~S~ 418 (1134)
++. ..+..+ ....+.++++|++ ..+++.. .+..|+.. ++++ ......+...+ ++++. ++..++.
T Consensus 162 g~~-~~~~~~-~~~~~gi~~s~dg----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 162 GTL-SAPIRD-RVKPNGLAFLPSG----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp SCE-EEEECC-CSSEEEEEECTTS----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred CCE-EEeecC-CCCCccEEECCCC----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 333 333333 4567899999998 6655543 78889985 4444 22222222222 56666 6655554
Q ss_pred ecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEE-cCCCCEEEEEeCCCeEEEEccCCc
Q 001165 419 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA-SKDGMFLAVAGLHGLILYDIRQKK 494 (1134)
Q Consensus 419 s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~-SpdG~~LAsgg~dG~ilwd~~sg~ 494 (1134)
++.+.+|+.. ++. ...+..+.. +.+++| +|||+.|++++.+|...++..+++
T Consensus 236 --~~~v~~~~~~-g~~--------------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~ 288 (296)
T 3e5z_A 236 --GDGVHVLTPD-GDE--------------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRG 288 (296)
T ss_dssp --TTEEEEECTT-SCE--------------------EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCB
T ss_pred --CCeEEEECCC-CCE--------------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccc
Confidence 6678777742 221 223444445 788999 699999999999886677777764
No 182
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.14 E-value=4.2e-09 Score=133.46 Aligned_cols=243 Identities=9% Similarity=-0.059 Sum_probs=152.0
Q ss_pred ccEEEEEEcCCCCeEEEEEcC-C----eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe----
Q 001165 209 SAIIWLELCLPMRLLFVLYSN-G----QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV---- 279 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sD-G----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~---- 279 (1134)
..+..++|||||+.++.+.++ | ++++|++.+...... ... ......++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~------~~~~~~~~wspD-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELK------WVKFSGLAWLGN-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEE------EEESCCCEESTT-SEEEEEECCCC----
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCC------CceeccEEEECC-CEEEEEEecCccccc
Confidence 467889999999999988765 3 588888765443211 110 011246889999 99998887654
Q ss_pred ----------EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC-----cEEEE
Q 001165 280 ----------VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR-----GLTVW 344 (1134)
Q Consensus 280 ----------V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg-----~I~vW 344 (1134)
|.+|++...... ...+... ..|...+..+.|||||++|+..+.++ .|.+|
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~-----------~~lv~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSA-----------DQPVFAT----PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGG-----------CEEEECC----TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred ccccCCCCCEEEEEECCCCchh-----------CEEEecc----CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence 778887622110 1122111 12445689999999999988877544 79999
Q ss_pred ecCCC--eeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc-------eeEEEeCCCc--eEEEEecCCCccEEEEec--
Q 001165 345 SVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGY--RLYAIEEGSSERVLIFSF-- 411 (1134)
Q Consensus 345 dv~~~--~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-------~i~~W~~~~~--~l~~~~~~h~~~v~~~s~-- 411 (1134)
|+.++ .....+..+ ...+.... +|++ ..++..+ .+..|+..++ +.......+...+..+++
T Consensus 300 d~~~~~~~~~~~l~~~-~~~~~~~~-~~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~ 373 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPD-LKAQWDFV-DGVG----DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG 373 (741)
T ss_dssp EEETTEECCCEEEECS-SSSCEEEE-EEET----TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB
T ss_pred ECCCCCCcccEEecCC-CCceEEEE-eccC----CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC
Confidence 99776 313445443 23344443 4666 4443222 5888998874 444444444444544454
Q ss_pred CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeecc-CCCceEEEEEcCCCCEEEEEe----CCCeE
Q 001165 412 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAG----LHGLI 486 (1134)
Q Consensus 412 ~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~-h~~~V~~va~SpdG~~LAsgg----~dG~i 486 (1134)
++.+++...|+..++|.+...... ...+.. +...|..++++|||+.++... ..+.+
T Consensus 374 ~~lv~~~~~dg~~~l~~~~~~g~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 374 NRLFASYIHDAKSQVLAFDLDGKP-------------------AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp TEEEEEEEETTEEEEEEEETTSCE-------------------EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred CEEEEEEEECCEEEEEEEeCCCCc-------------------eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 556778888998888876422221 112222 345688899999998777332 34677
Q ss_pred -EEEccCCcEEEeC
Q 001165 487 -LYDIRQKKWRVFG 499 (1134)
Q Consensus 487 -lwd~~sg~Wk~F~ 499 (1134)
+||+.+++.+.+.
T Consensus 435 ~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 435 LALDPATAKTTPWE 448 (741)
T ss_dssp EEEETTTTEEEECS
T ss_pred EEEECCCCcEEEEe
Confidence 8999888766654
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.14 E-value=4.8e-09 Score=131.91 Aligned_cols=245 Identities=13% Similarity=0.052 Sum_probs=140.9
Q ss_pred ceeEEEEcCCceEEEEEeC-----CCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCC
Q 001165 69 ENLQAVWSPDTKLIAVVTS-----SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~-----dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~ 143 (1134)
.+..++|||||++||.+.+ +.+|++||++++.. +.. .+ +......-.++++||+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~-~~~-~~-------------------~~~~~~~~~~wspDg~ 180 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW-SKV-DV-------------------IEGGKYATPKWTPDSK 180 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB-CSS-CC-------------------BSCCTTCCCEECTTSS
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC-cCC-cc-------------------cCcccccceEEecCCC
Confidence 4678999999999996543 35799999976421 100 00 0000001236777888
Q ss_pred eEEEEecCCc-------------EEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCccc
Q 001165 144 HMLLGLSDGS-------------LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (1134)
Q Consensus 144 ~llv~t~dg~-------------v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~ 210 (1134)
.|+.++.+.. |+++........... . .....+...
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l-------------------------------v-~~~~~~~~~ 228 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV-------------------------------V-HERTGDPTT 228 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE-------------------------------E-ECCCCCTTC
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE-------------------------------E-EecCCCCEE
Confidence 8888776543 444332211100000 0 011233456
Q ss_pred EEEEEEcCCCCeEEEEEcCC----eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEee---eCCeEEEE
Q 001165 211 IIWLELCLPMRLLFVLYSNG----QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT---RRGVVELY 283 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~sDG----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~---~dg~V~lw 283 (1134)
+.++.|||+|+.+++...++ .+++++...... ..+.. +........+ |+|++++++. .++.|.+|
T Consensus 229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~----~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~ 300 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVK----GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEV 300 (695)
T ss_dssp EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEE----CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeec----CCCceEEEEe-cCCcEEEEECCCCCCCEEEEE
Confidence 78999999999999888776 566653322211 11111 1233445555 6676444433 25789999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCC-CcCeEEEEECCCCCEEEEEECCCcEEEEecC-CCeeEEEeccCCCC
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDD-TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLS 361 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h-~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~l~~tl~~h~~~ 361 (1134)
++++... +...++.. .+ ...|..++|+ +++.++++..|+..+||.+. .+.....+..++..
T Consensus 301 d~~~~~~-------------~~~~~l~~---~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~ 363 (695)
T 2bkl_A 301 DPAKPAR-------------ASWKEIVP---EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG 363 (695)
T ss_dssp BTTBCSG-------------GGCEEEEC---CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS
T ss_pred eCCCCCc-------------cCCeEEec---CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe
Confidence 9873210 00111111 12 4568889998 78899999999998888664 33445556544455
Q ss_pred ceeeeEEcCCCCCCcceEE----Ecc---eeEEEeCCCceE
Q 001165 362 SISSPIVKPNQDCKYEPLM----SGT---SMMQWDEYGYRL 395 (1134)
Q Consensus 362 ~V~sv~~sp~~~~~~~~l~----sgs---~i~~W~~~~~~l 395 (1134)
.|..+.++|++ ..++ +.. ++..|+..+++.
T Consensus 364 ~v~~~~~s~d~----~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 364 AASNLMGLEDL----DDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EECCCBSCTTC----SEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeecCCCC----CEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 67888888876 3333 211 678888877664
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.10 E-value=2.8e-08 Score=125.21 Aligned_cols=195 Identities=9% Similarity=0.003 Sum_probs=122.6
Q ss_pred CeEEEEECCCCCEEEEeeeCC-----eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE
Q 001165 258 DAVCASIAPEQQILAVGTRRG-----VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF 332 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg-----~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L 332 (1134)
.+..++|||||++||.++.++ +|++||++ +++....... + ..+..++|||||+.|
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~---------------tg~~~~~~~~----~-~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD---------------GAKELPDVLE----R-VKFSCMAWTHDGKGM 185 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT---------------TTEEEEEEEE----E-ECSCCEEECTTSSEE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC---------------CCCCCccccc----C-cccceEEEEeCCCEE
Confidence 366889999999999887654 89999998 5655442111 1 236789999999999
Q ss_pred EEEECCCc----------------EEEEecCCCee--EEEeccC-CCCceeeeEEcCCCCCCcceEEEcc--------ee
Q 001165 333 AVGWKSRG----------------LTVWSVSGCRL--MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT--------SM 385 (1134)
Q Consensus 333 asg~~Dg~----------------I~vWdv~~~~l--~~tl~~h-~~~~V~sv~~sp~~~~~~~~l~sgs--------~i 385 (1134)
+.++.++. |.+|++.++.. ....... +...+.++.++|++ +.++.++ .+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~~l 261 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG----RYVLLSIREGCDPVNRL 261 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS----CEEEEEEECSSSSCCEE
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC----CEEEEEEEccCCCccEE
Confidence 99988876 99999987652 1222221 13457889999998 6554322 57
Q ss_pred EEEeCCC------ce-EEEEecCCCccE-EEEec-CCEEEeeec-C---CcEEeeeeeeCCCeEEEeecCCCcccccccc
Q 001165 386 MQWDEYG------YR-LYAIEEGSSERV-LIFSF-GKCCLNRGV-S---GMTYARQVIYGEDRLLVVQSEDTDELKILHL 452 (1134)
Q Consensus 386 ~~W~~~~------~~-l~~~~~~h~~~v-~~~s~-~k~l~S~s~-d---~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~ 452 (1134)
.+|+..+ +. .+.....+...+ ..+++ ++.++..+. + ..+..|++..+... .|
T Consensus 262 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~--- 326 (710)
T 2xdw_A 262 WYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------------KW--- 326 (710)
T ss_dssp EEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GC---
T ss_pred EEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------cc---
Confidence 7888765 42 122222333332 44555 665543332 2 24556664433210 01
Q ss_pred ccceeeccCCC--ceEEEEEcCCCCEEEEEeCCCeE---EEEccCCc
Q 001165 453 NLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI---LYDIRQKK 494 (1134)
Q Consensus 453 ~~~~~~~~h~~--~V~~va~SpdG~~LAsgg~dG~i---lwd~~sg~ 494 (1134)
..+..|.. .+..+++++++..++++..+|.. +|+..+|+
T Consensus 327 ---~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 327 ---KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp ---EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred ---eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 22333332 58889999888888999999865 55664554
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.08 E-value=1.3e-08 Score=111.15 Aligned_cols=233 Identities=6% Similarity=-0.040 Sum_probs=148.3
Q ss_pred cEEEEEEcCCCCeEE-EEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 210 AIIWLELCLPMRLLF-VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la-~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
...++++++++++++ +...++.+..++........ .. ..+...+.+++++|+++++++.. ++.|.+|+.+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~---~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~- 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LP---FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS- 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CC---CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---Ee---eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC-
Confidence 677899999998666 43667888887654322110 00 01224567899999999777666 88999999772
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEE
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 368 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~ 368 (1134)
+.. ..+. ......+..++++|+|+.+++...++.|.+|+..+......... +...+.++++
T Consensus 97 --------------~~~-~~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~ 157 (270)
T 1rwi_B 97 --------------NNQ-TVLP---FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAV 157 (270)
T ss_dssp --------------SCC-EECC---CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEE
T ss_pred --------------ceE-eeee---cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEE
Confidence 111 1111 11335689999999999888877788999998755433222212 2346788999
Q ss_pred cCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecC
Q 001165 369 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 442 (1134)
Q Consensus 369 sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~ 442 (1134)
+|++ ..+++.. .+..|+..+.........+.... +++++ +...++...++.+..|+.......
T Consensus 158 ~~~g----~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~------- 226 (270)
T 1rwi_B 158 DNSG----NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST------- 226 (270)
T ss_dssp CTTC----CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-------
T ss_pred eCCC----CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-------
Confidence 9988 6666543 88999998876554332322333 45555 566666666677777764221110
Q ss_pred CCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCC
Q 001165 443 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 493 (1134)
Q Consensus 443 ~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg 493 (1134)
.....+-..+..++++|+|+.+++...++.| +|+....
T Consensus 227 -------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 227 -------------VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp -------------ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred -------------eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 0011222457899999999988888889999 8887543
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.06 E-value=8.2e-09 Score=116.66 Aligned_cols=240 Identities=10% Similarity=0.025 Sum_probs=149.3
Q ss_pred EEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccc
Q 001165 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS 290 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~ 290 (1134)
|.++.|++++..++.+..++.+..|.... ...+. .+...+.+++|+|+|++++++..++.|.+||.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~---- 74 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTITAEP-----WLEIS----KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE---- 74 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEECEE-----EEEEE----SSCCCEEEEEECTTSCEEEEETTTCEEEEECTT----
T ss_pred cceeeecCCccceeEEeecccCcccccce-----eEEEe----ccCccccCcEECCCCCEEEEECCCCEEEEEeCC----
Confidence 45566777766666556666666652110 00111 122456789999999988888899999999987
Q ss_pred ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC----CcEEEEecCCCeeEEEecc-CCCCceee
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQ-ISLSSISS 365 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D----g~I~vWdv~~~~l~~tl~~-h~~~~V~s 365 (1134)
+++....... +...+.+++|+|||+.++++..+ ++|.+||..++.....+.. .....+.+
T Consensus 75 -----------~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 75 -----------TKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp -----------TCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred -----------CCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 4443322222 56789999999999988888776 7899999988765433432 12356889
Q ss_pred eEEcCCCCCCcceEEEcc---------eeEEEeCCCceEEEEecCC-CccEEEEec-CCEE-EeeecCCcEEeeeeeeCC
Q 001165 366 PIVKPNQDCKYEPLMSGT---------SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCC-LNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs---------~i~~W~~~~~~l~~~~~~h-~~~v~~~s~-~k~l-~S~s~d~ti~~w~l~~~~ 433 (1134)
++++|++ ..+++.. .+..++.+++++.....+. ...-+++++ ++.+ ++.+.++.+.+|+.....
T Consensus 140 i~~d~~g----~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g 215 (333)
T 2dg1_A 140 MVFDSKG----GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG 215 (333)
T ss_dssp EEECTTS----CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred eEECCCC----CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence 9999998 6666532 4555666665544332211 111256677 6644 555567788888864321
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
..+..+.. .....+.++ ..+..++++++|+..++...++.+ +||...+.
T Consensus 216 ~~~~~~~~-----------~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~ 265 (333)
T 2dg1_A 216 VTIQPFGA-----------TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP 265 (333)
T ss_dssp SSEEEEEE-----------EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred cCcccccc-----------eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCE
Confidence 11100000 001111122 356789999999988877777878 99985443
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.03 E-value=3.8e-08 Score=107.31 Aligned_cols=235 Identities=6% Similarity=-0.037 Sum_probs=140.5
Q ss_pred ceeEEEEcCCceEEE-EEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEE
Q 001165 69 ENLQAVWSPDTKLIA-VVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (1134)
Q Consensus 69 ~~~~v~wSPDg~~La-v~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv 147 (1134)
....++++|||+.++ +.+.++.|..|+........... .. .. ...-.++.++|. +++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~--~~-----------------~~--~p~~i~~~~~g~-l~v 82 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF--NG-----------------LY--QPQGLAVDGAGT-VYV 82 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCC--CS-----------------CC--SCCCEEECTTCC-EEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEee--CC-----------------cC--CcceeEECCCCC-EEE
Confidence 346799999999766 44777889998865422111100 00 00 001123444555 677
Q ss_pred EecCCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE
Q 001165 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (1134)
Q Consensus 148 ~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~ 227 (1134)
+..++.|.+++-++...... .......+.+++++++++++++..
T Consensus 83 ~~~~~~i~~~d~~~~~~~~~------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~ 126 (270)
T 1rwi_B 83 TDFNNRVVTLAAGSNNQTVL------------------------------------PFDGLNYPEGLAVDTQGAVYVADR 126 (270)
T ss_dssp EETTTEEEEECTTCSCCEEC------------------------------------CCCSCSSEEEEEECTTCCEEEEEG
T ss_pred EcCCCEEEEEeCCCceEeee------------------------------------ecCCcCCCcceEECCCCCEEEEEC
Confidence 66677777654332211000 001124578899999998777666
Q ss_pred cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE
Q 001165 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY 307 (1134)
Q Consensus 228 sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~ 307 (1134)
.++.+..++....... ... ..+...+.+++++|+|+++++...++.|.+|+.+. +....
T Consensus 127 ~~~~i~~~~~~~~~~~---~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---------------~~~~~ 185 (270)
T 1rwi_B 127 GNNRVVKLAAGSKTQT---VLP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES---------------NNQVV 185 (270)
T ss_dssp GGTEEEEECTTCCSCE---ECC---CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT---------------CCEEE
T ss_pred CCCEEEEEECCCceeE---eec---cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC---------------CceEe
Confidence 7888888743221110 000 01224567899999999888877889999999872 22111
Q ss_pred EeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---e
Q 001165 308 TFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 384 (1134)
Q Consensus 308 ~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~ 384 (1134)
.. ..+...+.+|+++|+|+..++...++.|.+|+..+..... ....+...+.+++++|++ +.+++.. +
T Consensus 186 ~~----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g----~l~v~~~~~~~ 256 (270)
T 1rwi_B 186 LP----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDR----TVYVADRGNDR 256 (270)
T ss_dssp CC----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTC----CEEEEEGGGTE
T ss_pred ec----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCC----CEEEEECCCCE
Confidence 11 1133668899999999888888788999999998765433 222223567888888887 5555432 5
Q ss_pred eEEEeCC
Q 001165 385 MMQWDEY 391 (1134)
Q Consensus 385 i~~W~~~ 391 (1134)
+.+++..
T Consensus 257 v~~~~~~ 263 (270)
T 1rwi_B 257 VVKLTSL 263 (270)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 6666554
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.02 E-value=5.4e-08 Score=109.83 Aligned_cols=232 Identities=8% Similarity=-0.004 Sum_probs=140.8
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeC----CeEEEE
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR----GVVELY 283 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~d----g~V~lw 283 (1134)
...+.+++|+|+++++++...+|.+++|+........ ... .....+.+++++|+|++++++..+ +.|.+|
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~---~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE---Eee---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence 3456789999999977777788999998765433211 110 123568899999999988887766 689999
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC------CCcEEEEecCCCeeEEEecc
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~------Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
|.+ +++....+.. ..+...+.+++++|||+.+++... .+.|..++..+++.......
T Consensus 118 d~~---------------~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 180 (333)
T 2dg1_A 118 TEN---------------GDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN 180 (333)
T ss_dssp CTT---------------SCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE
T ss_pred eCC---------------CCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC
Confidence 987 2222211110 113457899999999998887764 24566666665543332222
Q ss_pred CCCCceeeeEEcCCCCCCcce-EEEcc---eeEEEeCCC-ce-EEE-------EecCCCccE--EEEec-CCEEEeeecC
Q 001165 358 ISLSSISSPIVKPNQDCKYEP-LMSGT---SMMQWDEYG-YR-LYA-------IEEGSSERV--LIFSF-GKCCLNRGVS 421 (1134)
Q Consensus 358 h~~~~V~sv~~sp~~~~~~~~-l~sgs---~i~~W~~~~-~~-l~~-------~~~~h~~~v--~~~s~-~k~l~S~s~d 421 (1134)
...+..++++|++ .. +++.. .+.+|+..+ ++ +.. ...++ ... ++++. ++..++...+
T Consensus 181 --~~~~~~i~~~~dg----~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~ 253 (333)
T 2dg1_A 181 --ISVANGIALSTDE----KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQ 253 (333)
T ss_dssp --ESSEEEEEECTTS----SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETT
T ss_pred --CCcccceEECCCC----CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCC
Confidence 3357889999997 53 34332 788899842 22 211 11121 122 45555 6666666566
Q ss_pred CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 422 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 422 ~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
+.+.+|+. .+.. +..+ ..+....+|...+.+++|+|||+.|++++.+|
T Consensus 254 ~~v~~~d~-~g~~-~~~~-------------~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 254 GRVLVFNK-RGYP-IGQI-------------LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TEEEEECT-TSCE-EEEE-------------ECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CEEEEECC-CCCE-EEEE-------------EcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 77777764 2221 1100 01111112223578999999998888777764
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.02 E-value=7.4e-07 Score=98.07 Aligned_cols=263 Identities=6% Similarity=-0.011 Sum_probs=159.9
Q ss_pred CCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 206 ~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
.....+.+++++++++..+....+|.+..++.. .... .... ......+.+++++++|++.++...++.|..|+.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---EYPL--PTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---EEEC--SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---EecC--CcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 344678999999999977766557888888765 2211 1110 012356789999999998888777889999987
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceee
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
+. ....+. + +.....+.+++++|+|+..++...++.|.+||..+.......... ...+.+
T Consensus 86 ~g---~~~~~~------------~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-~~~~~~ 145 (299)
T 2z2n_A 86 KG---IIKEYT------------L----PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNK-GSYPSF 145 (299)
T ss_dssp TS---CEEEEE------------C----SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEE
T ss_pred CC---cEEEEe------------C----CCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCC-CCCCce
Confidence 61 111111 1 113456899999999998888877889999999443322222222 346889
Q ss_pred eEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEE-ecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEE
Q 001165 366 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 438 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~-~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l 438 (1134)
+++++++ ..+++.. .+..|+. ++++... ...+...+ +++++ ++..++...++.+..++. .+...
T Consensus 146 i~~~~~g----~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--- 216 (299)
T 2z2n_A 146 ITLGSDN----ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--- 216 (299)
T ss_dssp EEECTTS----CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---
T ss_pred EEEcCCC----CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE---
Confidence 9999887 6666542 7888998 5555433 22222233 44454 555555545566666664 22211
Q ss_pred eecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCC
Q 001165 439 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK 517 (1134)
Q Consensus 439 ~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~ 517 (1134)
.. ....+...+..++++++|+..++...++.+ .||. ++....+...... ..+.++...++
T Consensus 217 ------------~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~--~~~~~i~~~~g 277 (299)
T 2z2n_A 217 ------------EF----KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKS--AEPHGICFDGE 277 (299)
T ss_dssp ------------EE----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSS--CCEEEEEECSS
T ss_pred ------------EE----ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCC--CccceEEecCC
Confidence 00 011234567899999999966655466777 9998 4555544322111 22445444434
Q ss_pred EEEEE
Q 001165 518 IIVVC 522 (1134)
Q Consensus 518 ~lv~~ 522 (1134)
.+.++
T Consensus 278 ~l~v~ 282 (299)
T 2z2n_A 278 TIWFA 282 (299)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 44444
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.01 E-value=6.5e-07 Score=98.57 Aligned_cols=232 Identities=6% Similarity=-0.045 Sum_probs=144.5
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
..+.+++++++++..++...+|.+..++..+. ...... . .....+.++++.|++++.++...++.|..|+.+.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~-~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g- 129 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI----IKEYTL-P-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDG- 129 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSC----EEEEEC-S-STTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCc----EEEEeC-C-CcCCCceeeEECCCCCEEEEecCCceEEEECCCC-
Confidence 56788999999987777666788888765421 111110 0 1235678999999999888877788999998741
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEE-eccCCCCceeeeE
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPI 367 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~t-l~~h~~~~V~sv~ 367 (1134)
. ... ... ..+...+.+++++|+|+..++...++.|..||. +++.... +... ...+.+++
T Consensus 130 ~--~~~------------~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~ 189 (299)
T 2z2n_A 130 K--IRE------------YEL----PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGIT 189 (299)
T ss_dssp C--EEE------------EEC----SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEE
T ss_pred C--EEE------------ecC----CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEE
Confidence 0 101 011 113456899999999998888877889999999 5544332 2222 45678899
Q ss_pred EcCCCCCCcceEEEc---ceeEEEeCCCceEEEE-ecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEee
Q 001165 368 VKPNQDCKYEPLMSG---TSMMQWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sg---s~i~~W~~~~~~l~~~-~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~ 440 (1134)
+++++ ..+++. ..+..|+. +++.... ...+...+ +.+++ ++..++...++.+..++. .+ .+..
T Consensus 190 ~~~~g----~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g--~~~~-- 259 (299)
T 2z2n_A 190 KGNDD----ALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN--IIEE-- 259 (299)
T ss_dssp ECTTS----SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT--EEEE--
T ss_pred ECCCC----CEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC--ceEE--
Confidence 99987 666654 27888998 5554332 22223344 44444 555555445566766664 22 1100
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCC
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK 493 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg 493 (1134)
.....+...+.++++ ++|+..++.+.+|...++..++
T Consensus 260 ---------------~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 260 ---------------YPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp ---------------EECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred ---------------EeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 001123446889999 8998777665555558887665
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.00 E-value=4.9e-08 Score=123.62 Aligned_cols=160 Identities=12% Similarity=0.025 Sum_probs=100.0
Q ss_pred ccEEEEEEcCCCCeEEEEEcCC-----eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee----CCe
Q 001165 209 SAIIWLELCLPMRLLFVLYSNG-----QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR----RGV 279 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG-----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~----dg~ 279 (1134)
..+.++.|||+|+.+++...++ .+++|+..+........+.. +....... ++|+|+.|++.+. ++.
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~----~~~~~~~~-~~~dg~~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP----DLKAQWDF-VDGVGDQLWFVSGDGAPLKK 342 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC----SSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC----CCCceEEE-EeccCCEEEEEECCCCCCCE
Confidence 3578899999999998888665 78888876541110111111 11223333 4589998888776 345
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC-CCeeEEEeccC
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQI 358 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~-~~~l~~tl~~h 358 (1134)
|.+|++++.. ....++. +.+...+..++|+ ++..+++...|+..+||.+. .+.....+..+
T Consensus 343 l~~~d~~~~~--------------~~~~~l~---~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 343 IVRVDLSGST--------------PRFDTVV---PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp EEEEECSSSS--------------CEEEEEE---CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred EEEEeCCCCc--------------cccEEEe---cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence 8888887210 1112211 1255567788888 67788888999988888654 33445556543
Q ss_pred CCCceeeeEEcCCCCCCcceEE----Ecc---eeEEEeCCCceE
Q 001165 359 SLSSISSPIVKPNQDCKYEPLM----SGT---SMMQWDEYGYRL 395 (1134)
Q Consensus 359 ~~~~V~sv~~sp~~~~~~~~l~----sgs---~i~~W~~~~~~l 395 (1134)
+...|..+.++|++ ..+. +.. ++..||..+++.
T Consensus 405 ~~~~v~~~~~s~d~----~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 405 GIGSASGLSGRPGD----RHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp SSCEEEEEECCBTC----SCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCeEEEEeecCCCC----CEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 35568888888876 3332 211 778888877763
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.99 E-value=6.6e-07 Score=109.15 Aligned_cols=329 Identities=9% Similarity=-0.028 Sum_probs=187.6
Q ss_pred CCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEE
Q 001165 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYS 156 (1134)
Q Consensus 77 PDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~ 156 (1134)
|++..+++...+++|.++|.++.. .+. .+ ..+. ...-..+++||+++++++.+|.|..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~-v~~------------~i--------~~g~-~p~~v~~SpDGr~lyv~~~dg~V~v 222 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE-IKT------------VL--------DTGY-AVHISRLSASGRYLFVIGRDGKVNM 222 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC-EEE------------EE--------ECSS-CEEEEEECTTSCEEEEEETTSEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe-EEE------------EE--------eCCC-CccceEECCCCCEEEEEcCCCeEEE
Confidence 445567777788999999986531 110 00 1110 1112467889999999999999888
Q ss_pred EecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEc----CCCCeEEEEEc-CCe
Q 001165 157 ISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC----LPMRLLFVLYS-NGQ 231 (1134)
Q Consensus 157 ~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fs----p~~~~la~~~s-DG~ 231 (1134)
++...++.... ..+ ........++|+ |+|+.++++.. +++
T Consensus 223 iD~~~~t~~~v------------~~i-----------------------~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 223 IDLWMKEPTTV------------AEI-----------------------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp EETTSSSCCEE------------EEE-----------------------ECCSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred EECCCCCCcEe------------EEE-----------------------ecCCCCceeEEccccCCCCCEEEEEEccCCe
Confidence 76531111111 000 012235689999 69988777654 588
Q ss_pred EEEEEeccCCccccceeccccc-C------CCCCeEEEEECCCCCEEEE-eeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 232 LMSCSVSKKGLKLAEFIKIDKE-L------GSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 232 v~l~~~~~~~~~~~~~~~~~~~-~------~~~~~~~va~spdg~llAs-G~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
+.+++........ .+..... . ....+..+.+++++..+++ -..+|+|.++|..+....
T Consensus 268 v~ViD~~t~~~~~--~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~------------ 333 (567)
T 1qks_A 268 YVIMDGETLEPKK--IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL------------ 333 (567)
T ss_dssp EEEEETTTCCEEE--EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE------------
T ss_pred EEEEECCCCcEEE--EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc------------
Confidence 8888765433221 1110000 0 0125678888998765444 456799999998732210
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecCCCeeEEEecc-CCC-CceeeeE-EcCCCCCCcceE
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQ-ISL-SSISSPI-VKPNQDCKYEPL 379 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~~~~l~~tl~~-h~~-~~V~sv~-~sp~~~~~~~~l 379 (1134)
.+.++. ......++.|+|||++++++. .+++|.++|+.++++..++.- ... .+-..+. ++|++. ..+
T Consensus 334 -~v~~i~-----~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g---~v~ 404 (567)
T 1qks_A 334 -KTTEIS-----AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG---PVW 404 (567)
T ss_dssp -EEEEEE-----CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE---EEE
T ss_pred -eeeeee-----ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC---cEE
Confidence 011111 223466889999999887765 568999999999988777653 110 0111222 467641 344
Q ss_pred EEc----ceeEEEeCCC-------ceEEEEecCC-CccE-EEEec-CCEEEeeec-------CCcEEeeeeeeC-----C
Q 001165 380 MSG----TSMMQWDEYG-------YRLYAIEEGS-SERV-LIFSF-GKCCLNRGV-------SGMTYARQVIYG-----E 433 (1134)
Q Consensus 380 ~sg----s~i~~W~~~~-------~~l~~~~~~h-~~~v-~~~s~-~k~l~S~s~-------d~ti~~w~l~~~-----~ 433 (1134)
+++ .++.+++... .+.+...... ...+ +.+++ ++.+..... ..++.++|+.+. .
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 442 2788898876 4555554432 2223 55666 665554332 357777776543 1
Q ss_pred CeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEe-----CCCeE-EEEccCCcEE
Q 001165 434 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-----LHGLI-LYDIRQKKWR 496 (1134)
Q Consensus 434 ~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg-----~dG~i-lwd~~sg~Wk 496 (1134)
...-+.. ...|.. +......+.+..|+|||+++.++. .++.| ++|..+++-+
T Consensus 485 ~~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 485 PEFKTLP-----IAEWAG------ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp CCEEEEC-----HHHHHT------CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCcEEec-----cccccc------cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 1000000 000110 001133578999999999988773 36888 9999988643
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.98 E-value=1.9e-07 Score=108.11 Aligned_cols=255 Identities=10% Similarity=-0.009 Sum_probs=143.3
Q ss_pred eeEEEeecCeEEEEEc-----------CCeEEEeecCCcceeEEEeecC-hhhHHhhcceeEEEEcCCceEEEEEeC--C
Q 001165 23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRD-SESVQREGENLQAVWSPDTKLIAVVTS--S 88 (1134)
Q Consensus 23 ~iv~fS~dg~llAs~s-----------~~~l~IW~~~~~~~~l~~~~r~-~~sl~~~G~~~~v~wSPDg~~Lav~t~--d 88 (1134)
+-++|||||+.+.++. +++|.+||.. ....++...-. .........-..++|||||++|+++.. +
T Consensus 69 p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~-t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 3678999999877663 4679999996 33333332110 000000011247899999999999874 5
Q ss_pred CEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCC-eEEEEecCCcEEEEecCCccccce
Q 001165 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK-HMLLGLSDGSLYSISWKGEFYGAF 167 (1134)
Q Consensus 89 g~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~-~llv~t~dg~v~~~~wd~~~~~~~ 167 (1134)
+.|.++| +... .... .+++.+ ...+.+++. ..++.+.+|.+..++.++......
T Consensus 148 ~~v~viD-~t~~-~~~~-------------------~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~ 202 (373)
T 2mad_H 148 PAVGLVV-QGGS-SDDQ-------------------LLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred CeEEEEE-CCCC-EEeE-------------------EcCCCc----eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEE
Confidence 7899998 6532 1100 001110 012223332 233344566665544311110000
Q ss_pred eccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccce
Q 001165 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (1134)
Q Consensus 168 ~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~ 247 (1134)
...+. ..+...-.....|.++++.+++.+.+|.+++++...........
T Consensus 203 ------------~~~~~-------------------~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 203 ------------LVGAM-------------------LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP 251 (373)
T ss_pred ------------ecccc-------------------ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeee
Confidence 00000 00111112235567777666666677888877764332111111
Q ss_pred ec-------ccccCCCCCeEEEEECCCCCEEEEeee----------CCeEEEEeccccccceeeeeeeccCcceEEEEee
Q 001165 248 IK-------IDKELGSGDAVCASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGMREVYYTFC 310 (1134)
Q Consensus 248 ~~-------~~~~~~~~~~~~va~spdg~llAsG~~----------dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~ 310 (1134)
+. ...|. ......++++|+++.+-++.. +++|.++|.. +++.+.++.
T Consensus 252 ~~~~~~~~~~~~~~-p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~---------------t~~vv~~i~ 315 (373)
T 2mad_H 252 IDALSGGRKADTWR-PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL---------------VGQTSSQIS 315 (373)
T ss_pred eeecCCccccccee-cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC---------------CCEEEEEEE
Confidence 10 00111 122345789999887766543 3579999988 777777764
Q ss_pred cccCCCCcCeEEEEECCCCC-EEEEEE-CCCcEEEEecCCCeeEEEe
Q 001165 311 RYSMDDTGPVSCIAWTPDNS-AFAVGW-KSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 311 ~~~~~h~g~V~~l~fSPDG~-~Lasg~-~Dg~I~vWdv~~~~l~~tl 355 (1134)
. .+...+++|||||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 316 ~-----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 316 L-----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred C-----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 3 23578999999999 788876 5899999999999888774
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.94 E-value=8.4e-08 Score=110.48 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=81.2
Q ss_pred EEc-CCCCeEEEEEcCCeEEEEEeccCCccccceec-------ccccCCCCCeEEEEECCCCCEEEEeee----------
Q 001165 215 ELC-LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-------IDKELGSGDAVCASIAPEQQILAVGTR---------- 276 (1134)
Q Consensus 215 ~fs-p~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~va~spdg~llAsG~~---------- 276 (1134)
+|. ++| .+++++.+|++++.+..+........+. ...|. ......++++|+++.+.+...
T Consensus 232 ~~~~~dG-~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~-p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 232 AYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp EEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred eeEcCCC-cEEEEeCCCEEEEEECCCCcceeecceecccccccccccc-CCCcceeeECCCCCeEEEEeccccccccCCC
Confidence 554 455 4555777899999887644322111111 00111 122335778999887776543
Q ss_pred CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEE-ECCCcEEEEecCCCeeEEE
Q 001165 277 RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMST 354 (1134)
Q Consensus 277 dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg-~~Dg~I~vWdv~~~~l~~t 354 (1134)
.++|.++|+. +++.++++.. ...+..|++||||+ +|.++ +.+++|.|+|..+++.+.+
T Consensus 310 ~~~V~viD~~---------------t~kv~~~i~v-----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 310 SRFVVVLDAK---------------TGERLAKFEM-----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEEETT---------------TCCEEEEEEE-----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECC---------------CCeEEEEEEC-----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 2468888888 7777777653 23688999999997 66665 5589999999999999999
Q ss_pred eccC
Q 001165 355 IRQI 358 (1134)
Q Consensus 355 l~~h 358 (1134)
+...
T Consensus 370 i~~~ 373 (386)
T 3sjl_D 370 VNQL 373 (386)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8763
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.89 E-value=2.1e-07 Score=102.91 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=130.7
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCC-cCeEEEEECCCCCEEEEEECCCcEEEEe
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~-g~V~~l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
.+++|++++.|+.|.+||.+ +|+.+.++.. +. ..+.++.++|||+.+++ .+++|..||
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~---------------tG~~~w~~~~----~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d 62 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD---------------TKEIVWEYPL----EKGWECNSVAATKAGEILFS--YSKGAKMIT 62 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT---------------TTEEEEEEEC----CTTCCCCEEEECTTSCEEEE--CBSEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECC---------------CCeEEEEeCC----CccCCCcCeEECCCCCEEEe--CCCCEEEEC
Confidence 46789999999999999998 7888888765 54 46899999999999983 467899999
Q ss_pred cCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEecC-----CCcc--EEEEec-CC
Q 001165 346 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEG-----SSER--VLIFSF-GK 413 (1134)
Q Consensus 346 v~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~~-----h~~~--v~~~s~-~k 413 (1134)
. +++.+..+..+....+.++.+.|++ +.+++.. .+..++.++..++..... +... .+.+.+ ++
T Consensus 63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG----~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 63 R-DGRELWNIAAPAGCEMQTARILPDG----NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp T-TSCEEEEEECCTTCEEEEEEECTTS----CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred C-CCCEEEEEcCCCCccccccEECCCC----CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC
Confidence 9 6677777765423468889999998 7776532 666778866555443311 1011 134445 78
Q ss_pred EEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 414 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 414 ~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
.+++...++.+..||.. ++. .| ++..+. ...++.+.++|+.+++++.++.+ .+|..+
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~-------------~w-------~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQL-------------LN-------SVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCE-------------EE-------EEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred EEEEecCCCEEEEECCC-CCE-------------EE-------EEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 88888888889888854 443 22 222222 34467889999999999888888 999997
Q ss_pred Cc
Q 001165 493 KK 494 (1134)
Q Consensus 493 g~ 494 (1134)
|+
T Consensus 196 G~ 197 (276)
T 3no2_A 196 NR 197 (276)
T ss_dssp CC
T ss_pred Cc
Confidence 74
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.87 E-value=2.2e-06 Score=104.43 Aligned_cols=291 Identities=13% Similarity=0.072 Sum_probs=173.5
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEEC----CCCCEEEEeee-CCeEEEEe
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIA----PEQQILAVGTR-RGVVELYD 284 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~s----pdg~llAsG~~-dg~V~lwd 284 (1134)
.+..+.|||+++++++++.||.+.++++..........+. .+ .....++|+ |||+++.+++. +++|.++|
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD 272 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----IG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 272 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----CC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----cC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence 3557899999999999999999999997411111122222 12 456789999 79998777664 59999999
Q ss_pred ccccccceeeeeeeccCcceEEEEeec--ccC----CCCc-CeEEEEECCCCCEEEEE-ECCCcEEEEecCCCe--eEEE
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCR--YSM----DDTG-PVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCR--LMST 354 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~--~~~----~h~g-~V~~l~fSPDG~~Lasg-~~Dg~I~vWdv~~~~--l~~t 354 (1134)
.. +.+.+.++.- ... .|.. .|..+..|+++..+++. .++|.|.++|..... .+.+
T Consensus 273 ~~---------------t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~ 337 (567)
T 1qks_A 273 GE---------------TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 337 (567)
T ss_dssp TT---------------TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred CC---------------CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee
Confidence 77 4444443321 000 0222 68889999997755544 566999999987643 2233
Q ss_pred eccCCCCceeeeEEcCCCCCCcceEEEcc----eeEEEeCCCceEEEEecC-----CCc-cEEEEec--CCEEEeee-cC
Q 001165 355 IRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEG-----SSE-RVLIFSF--GKCCLNRG-VS 421 (1134)
Q Consensus 355 l~~h~~~~V~sv~~sp~~~~~~~~l~sgs----~i~~W~~~~~~l~~~~~~-----h~~-~v~~~s~--~k~l~S~s-~d 421 (1134)
+.. ........|+|++ +.+..+. ++.++|..++++.....- |.+ .+..+++ +...++.. .+
T Consensus 338 i~~--~~~~~d~~~~pdg----r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 338 ISA--ERFLHDGGLDGSH----RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD 411 (567)
T ss_dssp EEC--CSSEEEEEECTTS----CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred eec--cccccCceECCCC----CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC
Confidence 322 2345678899998 6654322 899999999988765432 332 2222455 33434443 35
Q ss_pred CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC-------CCeE-EEEccCC
Q 001165 422 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-------HGLI-LYDIRQK 493 (1134)
Q Consensus 422 ~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~-------dG~i-lwd~~sg 493 (1134)
+++.+++...... ++..|+.++ +.......-..+.++|||+++.+... .+.| ++|+.+.
T Consensus 412 ~~Vsvid~~~~~~----------~~~~~kvv~---~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 412 DSVALIGTDPEGH----------PDNAWKILD---SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp SEEEEEECCTTTC----------TTTBTSEEE---EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CeEEEecCCCCCC----------ccccCEEEE---EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6777776543211 122344332 22221111125678999999999874 3477 9999765
Q ss_pred -----c--EEEeCCc----cceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 494 -----K--WRVFGDI----TQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 494 -----~--Wk~F~~~----~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
. ++..... ..|..-.+.++.+. ++.+.+++....+.+..|.+|+..
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence 1 1222100 00111235556665 556777666544456778888764
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.87 E-value=3.3e-07 Score=101.44 Aligned_cols=216 Identities=10% Similarity=0.005 Sum_probs=134.5
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
.++.+++++.|+++++|+...... .|.........+.++++.|+|++++ +.++.|..||.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-----~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~------------ 64 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-----VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD------------ 64 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-----EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-----EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC------------
Confidence 456788888899999988633221 1110000113567899999999998 347788888874
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC-CCcEEEEecCCCeeEEEeccC-----CCCceeeeEEcCCC
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQ 372 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~-Dg~I~vWdv~~~~l~~tl~~h-----~~~~V~sv~~sp~~ 372 (1134)
|+.+.++.. .+...+.++.+.|||+.+++.+. ++.+..+|..| +.+.++.-. .......+++.+++
T Consensus 65 ----G~~~W~~~~---~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 65 ----GRELWNIAA---PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp ----SCEEEEEEC---CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred ----CCEEEEEcC---CCCccccccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEeccCCCCcccccccCceECCCC
Confidence 455555543 12346889999999999999887 77788888754 555554311 11234556677887
Q ss_pred CCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccc
Q 001165 373 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 448 (1134)
Q Consensus 373 ~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~ 448 (1134)
+.+++.. .+..||.++..+|....+....-..+.+ ++.+++++.++.+..+|..+++. .
T Consensus 137 ----~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-------------~ 199 (276)
T 3no2_A 137 ----NYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI-------------V 199 (276)
T ss_dssp ----CEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE-------------E
T ss_pred ----CEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-------------E
Confidence 7777654 8999999955555543221111133344 77777777777777776544433 2
Q ss_pred ccccc--cceeeccCCCceEEEEEcCCCCEEEEEe
Q 001165 449 ILHLN--LPVSYISQNWPVQHVAASKDGMFLAVAG 481 (1134)
Q Consensus 449 w~~~~--~~~~~~~h~~~V~~va~SpdG~~LAsgg 481 (1134)
|+... ++. ..-..+..++..++|+.+++..
T Consensus 200 w~~~~~~~~~---~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEG---VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBS---CCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCC---ccccccccceEcCCCCEEEEec
Confidence 33211 010 0112367888889999888773
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.85 E-value=2.6e-07 Score=102.63 Aligned_cols=193 Identities=11% Similarity=0.008 Sum_probs=127.9
Q ss_pred CCeEEEEECCCCC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 257 ~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
....+++|+|+++ +++++..++.|..|+.+ ++ ...+.. +.+.+.+++|+|||+.+++.
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~---------------~~--~~~~~~----~~~~~~~l~~~~dg~l~v~~ 86 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDD---------------GQ--LSPEMH----PSHHQNGHCLNKQGHLIACS 86 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETT---------------SC--EEEEES----SCSSEEEEEECTTCCEEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECC---------------CC--eEEEEC----CCCCcceeeECCCCcEEEEe
Confidence 4456899999998 88899999999999988 33 333333 66779999999999988888
Q ss_pred ECCCcEEEEecCCCeeEEEec---cCCCCceeeeEEcCCCCCCcceEEE----cc----------------eeEEEeCCC
Q 001165 336 WKSRGLTVWSVSGCRLMSTIR---QISLSSISSPIVKPNQDCKYEPLMS----GT----------------SMMQWDEYG 392 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~~~l~~tl~---~h~~~~V~sv~~sp~~~~~~~~l~s----gs----------------~i~~W~~~~ 392 (1134)
..+++|.+||..+++...... +.....+++++++|++ ..+++ |. .+..++..
T Consensus 87 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G----~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG----SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp TTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS----CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred cCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC----CEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 777899999996665433222 1112356789999998 77775 32 44445555
Q ss_pred ceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEE
Q 001165 393 YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 469 (1134)
Q Consensus 393 ~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va 469 (1134)
+++.... .+.... +++++ ++.+++.+.++.+..|++..... +.- ....+..+...+..++
T Consensus 162 g~~~~~~-~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-~~~---------------~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 162 GTLSAPI-RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-TEY---------------QGVHFTVEPGKTDGLR 224 (296)
T ss_dssp SCEEEEE-CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC-EEE---------------EEEEECCSSSCCCSEE
T ss_pred CCEEEee-cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc-CcC---------------CCeEeeCCCCCCCeEE
Confidence 4443333 222222 67777 77777777788899988752111 000 0011112334456899
Q ss_pred EcCCCCEEEEEeCCCeE-EEEccCCc
Q 001165 470 ASKDGMFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 470 ~SpdG~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
++++|+..++. ++.+ +||.....
T Consensus 225 ~d~~G~l~v~~--~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 225 VDAGGLIWASA--GDGVHVLTPDGDE 248 (296)
T ss_dssp EBTTSCEEEEE--TTEEEEECTTSCE
T ss_pred ECCCCCEEEEc--CCeEEEECCCCCE
Confidence 99999866655 6667 99987543
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.76 E-value=1.3e-06 Score=97.31 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=79.0
Q ss_pred cEEEEEEc----CCCCeEEEE-EcCCeEEEEEecc-CCccccceecccccCC-C-CCeEEEEECCCCCEEEEeeeCCeEE
Q 001165 210 AIIWLELC----LPMRLLFVL-YSNGQLMSCSVSK-KGLKLAEFIKIDKELG-S-GDAVCASIAPEQQILAVGTRRGVVE 281 (1134)
Q Consensus 210 ~V~~i~fs----p~~~~la~~-~sDG~v~l~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~va~spdg~llAsG~~dg~V~ 281 (1134)
....++++ |+++.+.++ ..++++..|+... ........... ... . ..+..++++++|++.++...++.|.
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH--IPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE--CCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE--CCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 34678899 999766555 4578899988752 11110001110 011 1 3467899999999988887889999
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE-ECCCcEEEEecCC
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSG 348 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg-~~Dg~I~vWdv~~ 348 (1134)
+||.+ +++.+..+.. +...+.+++|+|||+.|.++ ..+++|..|++..
T Consensus 251 ~~d~~---------------~g~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPD---------------GGQPKMRIRC----PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTT---------------CBSCSEEEEC----SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCC---------------CCcEeEEEeC----CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99987 3444333333 55779999999999955544 5568999998864
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.75 E-value=2e-06 Score=95.69 Aligned_cols=239 Identities=6% Similarity=-0.015 Sum_probs=138.8
Q ss_pred cEEEEEEcCCCCeEEE-------EEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEE
Q 001165 210 AIIWLELCLPMRLLFV-------LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVE 281 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~-------~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~ 281 (1134)
...+++|+++++++++ ...+|.+..|+........... +........+.+++++++ ++++++.. ++.|.
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--PEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--CEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--cccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 4568899999987777 5778889888754332211100 000001245789999999 87666544 44788
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC---------------CcEEEEec
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------RGLTVWSV 346 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D---------------g~I~vWdv 346 (1134)
+|+.+ . . ...+. .. .....+...+.+++++|+|+..++...+ +.|..|+.
T Consensus 96 ~~d~~-g-~-~~~~~-~~-----------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 96 VVQTD-G-T-FEEIA-KK-----------DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp EEETT-S-C-EEECC-SB-----------CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred EEeCC-C-C-EEEEE-ec-----------cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 88876 1 1 11110 00 0000122458899999999988877655 56777776
Q ss_pred CCCeeEEEeccCCCCceeeeEEc----CCCCCCcce-EEEcc---eeEEEeCC-Cce-----EEEEecCCC-ccE--EEE
Q 001165 347 SGCRLMSTIRQISLSSISSPIVK----PNQDCKYEP-LMSGT---SMMQWDEY-GYR-----LYAIEEGSS-ERV--LIF 409 (1134)
Q Consensus 347 ~~~~l~~tl~~h~~~~V~sv~~s----p~~~~~~~~-l~sgs---~i~~W~~~-~~~-----l~~~~~~h~-~~v--~~~ 409 (1134)
. +........ ......++++ |++ +. +++.. .+..|+.. +++ .+....++. ... +++
T Consensus 161 ~-g~~~~~~~~--~~~~~~i~~~~~~d~dg----~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 161 D-GQMIQVDTA--FQFPNGIAVRHMNDGRP----YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp T-SCEEEEEEE--ESSEEEEEEEECTTSCE----EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred C-CCEEEeccC--CCCcceEEEecccCCCC----CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 6 443332222 2346788898 886 43 33322 78888865 343 233333322 223 445
Q ss_pred ec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC-CCeE-
Q 001165 410 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI- 486 (1134)
Q Consensus 410 s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~-dG~i- 486 (1134)
+. ++..++...++.+..|+..++.. ...+..+...+.+++|+|||++|.+++. +|.+
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~--------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQP--------------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSC--------------------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcE--------------------eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEE
Confidence 55 66666655566677776432221 1223334456889999999997766654 4566
Q ss_pred EEEccCC
Q 001165 487 LYDIRQK 493 (1134)
Q Consensus 487 lwd~~sg 493 (1134)
.|++...
T Consensus 294 ~~~~~~~ 300 (314)
T 1pjx_A 294 KFEWQRN 300 (314)
T ss_dssp EEECSSC
T ss_pred EEeCCCC
Confidence 8887654
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.74 E-value=7.5e-07 Score=104.26 Aligned_cols=254 Identities=10% Similarity=0.073 Sum_probs=142.7
Q ss_pred eEEEeecCeEEEEEc-----------CCeEEEeecCCcceeEEEeecC-hhhHHhhc-ceeEEEEcCCceEEEEEeC--C
Q 001165 24 IIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRD-SESVQREG-ENLQAVWSPDTKLIAVVTS--S 88 (1134)
Q Consensus 24 iv~fS~dg~llAs~s-----------~~~l~IW~~~~~~~~l~~~~r~-~~sl~~~G-~~~~v~wSPDg~~Lav~t~--d 88 (1134)
-+++||||+.+.++. +++|.++|.. ....+....-. .... ..| .-..++|||||+++.++.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v~g~~r~-~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIELPDAPRF-LVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCC-CBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEECCCcccc-ccCCCcceEEEcCCCCEEEEEecCCC
Confidence 678999998655442 4589999996 43333332210 0000 001 1246899999999999864 5
Q ss_pred CEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCC-CeEEEEecCCcEEEEecCCccccce
Q 001165 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAF 167 (1134)
Q Consensus 89 g~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~-~~llv~t~dg~v~~~~wd~~~~~~~ 167 (1134)
+.|.++|+.... +. . ++.+.+ ...+.+++ ..++..+.+|.+..+..........
T Consensus 200 ~~VsVID~~t~k--vv-----------~--------~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 200 PAVGVVDLEGKT--FD-----------R--------MLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp CEEEEEETTTTE--EE-----------E--------EEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CeEEEEECCCCe--EE-----------E--------EEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 789999886531 11 0 011111 01122222 2233444555555444411100000
Q ss_pred eccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccce
Q 001165 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (1134)
Q Consensus 168 ~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~ 247 (1134)
.. ..+.. +.......+.|+++++.+++....|++++.+...........
T Consensus 255 -----------~~-~~~~v-------------------~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 255 -----------NT-EVFHT-------------------EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp -----------EC-CCCSC-------------------TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred -----------ee-eeecc-------------------CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 00 00000 000001124678888888777788888888875332111000
Q ss_pred ec-------ccccCCCCCeEEEEECCCCCEEEEeee----------CCeEEEEeccccccceeeeeeeccCcceEEEEee
Q 001165 248 IK-------IDKELGSGDAVCASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGMREVYYTFC 310 (1134)
Q Consensus 248 ~~-------~~~~~~~~~~~~va~spdg~llAsG~~----------dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~ 310 (1134)
.. ...|. ......++++|+++.+.+... +++|.+.|.. +.+.+.++.
T Consensus 304 ~~~~~~~~i~~g~~-p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~---------------T~kvv~~I~ 367 (426)
T 3c75_H 304 IEALTEAERADDWR-PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE---------------TGERINKIE 367 (426)
T ss_dssp EESSCTTTGGGTEE-ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT---------------TCCEEEEEE
T ss_pred eeeccccccccccc-cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC---------------CCeEEEEEE
Confidence 00 00000 011123689999886666543 3579999998 777777765
Q ss_pred cccCCCCcCeEEEEECCCCC-EEEEEE-CCCcEEEEecCCCeeEEEec
Q 001165 311 RYSMDDTGPVSCIAWTPDNS-AFAVGW-KSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 311 ~~~~~h~g~V~~l~fSPDG~-~Lasg~-~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
. .+....++|+|||+ +++++. .++.|.|+|+.+.+.+.++.
T Consensus 368 v-----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 368 L-----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp E-----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred C-----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 3 12478999999999 888888 58999999999999998873
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.73 E-value=5.4e-06 Score=93.82 Aligned_cols=232 Identities=10% Similarity=-0.050 Sum_probs=144.4
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
...+++. ++++.++...+++|.+||.. +++.+.++.. ......++++|||+..++...+
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~---------------t~~~~~~i~~-----~~~p~~i~~~~~g~lyv~~~~~ 104 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDIN---------------TFKEVGRITG-----FTSPRYIHFLSDEKAYVTQIWD 104 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETT---------------TCCEEEEEEC-----CSSEEEEEEEETTEEEEEEBSC
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECc---------------ccEEEEEcCC-----CCCCcEEEEeCCCeEEEEECCC
Confidence 4567774 45677777778999999998 7777777642 3567899999999655555478
Q ss_pred CcEEEEecCCCeeEEEeccCCC----CceeeeEEcCCCCCCcceEEEc---c-eeEEEeCCCceEEEEecCCCcc-EEEE
Q 001165 339 RGLTVWSVSGCRLMSTIRQISL----SSISSPIVKPNQDCKYEPLMSG---T-SMMQWDEYGYRLYAIEEGSSER-VLIF 409 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~~h~~----~~V~sv~~sp~~~~~~~~l~sg---s-~i~~W~~~~~~l~~~~~~h~~~-v~~~ 409 (1134)
+.|.+||..+++...++..... .....+++ .++ ..+++. . ++.+||+.++++.......... -+.+
T Consensus 105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~----~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~ 179 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK----YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVM 179 (328)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT----EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEE
T ss_pred CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC----EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEE
Confidence 9999999999888777654210 13456666 333 444442 2 7889999998877655322211 2556
Q ss_pred ec-CCEEEeeecC----------CcEEeeeeeeCCCeEEEeecCCCccccccccccceeecc-CCCceEEEEEcCCCCEE
Q 001165 410 SF-GKCCLNRGVS----------GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFL 477 (1134)
Q Consensus 410 s~-~k~l~S~s~d----------~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~-h~~~V~~va~SpdG~~L 477 (1134)
++ ++..++...+ +.+..+|..++.. ...+.. .....+.++|+|||++|
T Consensus 180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--------------------~~~~~~~~g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--------------------EKQFKFKLGDWPSEVQLNGTRDTL 239 (328)
T ss_dssp CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--------------------EEEEECCTTCCCEEEEECTTSCEE
T ss_pred cCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--------------------EEEEecCCCCCceeEEEecCCCEE
Confidence 66 6655554443 5666666432221 111111 11246799999999999
Q ss_pred EEEeCCCeE-EEEccCCcEEEeCCccceeeeEEEEEEee--CCEEEEEEEecCCCeeEEEEEeCC
Q 001165 478 AVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 478 Asgg~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~--~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
.++.. .+ +||..+++......... ......++.+. ++.+.+++...-.....|.+|+.+
T Consensus 240 yv~~~--~v~~~d~~t~~~~~~~~~~~-~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRVPVRPFLEF-RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEESS--SEEEEETTCSSCCSSCSBCC-CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEcc--EEEEEECCCCceeeeeeecC-CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 98876 67 99998876421110000 01235567775 345555532222345778888763
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.73 E-value=1.2e-05 Score=88.32 Aligned_cols=239 Identities=8% Similarity=-0.017 Sum_probs=145.9
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
...+.++.++++++..++...+|.+..++.. .... .+... .....+.++++.+++++.++...++.|..||.+.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g 92 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---EFEVP--TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG 92 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---EEECC--CCCCcceeEEECCCCCEEEEecCCCeEEEECCCC
Confidence 4567899999999977776678888887765 2211 11100 1225678999999999888777788999998761
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
. ...+ .+. .....+.++++.|+|+..++...++.|..++..+......+... ...+.+++
T Consensus 93 --~-~~~~------------~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~ 152 (300)
T 2qc5_A 93 --G-FTEY------------PLP----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK-GSYPAFIT 152 (300)
T ss_dssp --C-EEEE------------ECS----STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSST-TCCEEEEE
T ss_pred --C-eEEe------------cCC----CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCC-CCCceeEE
Confidence 1 1111 111 13356899999999998888777889999998843322223322 45688899
Q ss_pred EcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe-cCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEee
Q 001165 368 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 440 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~-~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~ 440 (1134)
+.+++ ..+++.. .+..++. +++..... ..+...+ +.+++ ++..++....+.+..++. .+...
T Consensus 153 ~d~~g----~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~----- 221 (300)
T 2qc5_A 153 LGSDN----ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS----- 221 (300)
T ss_dssp ECTTS----SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-----
T ss_pred ECCCC----CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE-----
Confidence 99887 6665532 7788888 44433322 1222223 33444 444444444444555543 11110
Q ss_pred cCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEe
Q 001165 441 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 498 (1134)
Q Consensus 441 g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F 498 (1134)
.. ....+...+..++++++|+..++...++.+ .|+. ++....+
T Consensus 222 ----------~~----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 222 ----------EY----DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp ----------EE----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred ----------EE----ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence 00 011233457899999999966655556777 9998 5655544
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.72 E-value=3.9e-06 Score=94.98 Aligned_cols=231 Identities=6% Similarity=-0.024 Sum_probs=145.3
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~ 289 (1134)
...++.++ .++.+++...+|.+.+++....... ..+. .......++++|++++.++...++.|.+||..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~--~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~--- 113 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV--GRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK--- 113 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE--EEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT---
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE--EEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC---
Confidence 34566664 3455555566789999887644321 1121 23567889999999776666579999999998
Q ss_pred cceeeeeeeccCcceEEEEeeccc-CCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYS-MDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~-~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
+++...++.... .++......+++ .+++.+++.+ .+++|.++|..+++...++... .....++
T Consensus 114 ------------t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~ 178 (328)
T 3dsm_A 114 ------------TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLV 178 (328)
T ss_dssp ------------TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCE
T ss_pred ------------CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceE
Confidence 555554443200 001124456777 4555555555 4899999999998888887653 2457888
Q ss_pred EcCCCCCCcceEEEc-------------ceeEEEeCCCceEEEEec---CCCccEEEEec-CCEEEeeecCCcEEeeeee
Q 001165 368 VKPNQDCKYEPLMSG-------------TSMMQWDEYGYRLYAIEE---GSSERVLIFSF-GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sg-------------s~i~~W~~~~~~l~~~~~---~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~ 430 (1134)
++|++ +.++++ ..+.+||+.++++..... +....-+++++ ++.+...+. ++..+|..
T Consensus 179 ~~~dG----~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 179 MDKYN----KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp ECTTS----EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred EcCCC----CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence 99988 665543 258889999888765543 21222377787 776665544 67777754
Q ss_pred eCCCeEEEeecCCCccccccccccceeec-cCCCceEEEEEcCCCCEEEEE-----eCCCeE-EEEcc
Q 001165 431 YGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVA-----GLHGLI-LYDIR 491 (1134)
Q Consensus 431 ~~~~~l~l~~g~~~~~~~w~~~~~~~~~~-~h~~~V~~va~SpdG~~LAsg-----g~dG~i-lwd~~ 491 (1134)
.+... ...+. .+......++++|++..|.++ ..+|.+ +||..
T Consensus 253 t~~~~-------------------~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 253 ADRVP-------------------VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CSSCC-------------------SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCcee-------------------eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 43320 00111 113456789999955555544 467888 99988
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.71 E-value=1.2e-05 Score=88.38 Aligned_cols=230 Identities=7% Similarity=-0.031 Sum_probs=135.9
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
..+.+++++++++..++...++.+..++.. .... .... -.....+.++++.+++++.++...++.|..|+.+.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~---~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 134 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT---EYPL--PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG- 134 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EEEC--SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE---EecC--CCCCCCCccceECCCCCEEEEccCCCeEEEECCCC-
Confidence 457889999999877766567888887654 2111 1110 00125678999999999888877788999988761
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEE
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 368 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~ 368 (1134)
. ... ..+. .....+.++++.|+|+..++...++.|..++..+.......... ...+.++++
T Consensus 135 -~-~~~------------~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~ 195 (300)
T 2qc5_A 135 -T-IYE------------YDLP----NKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTN-AAAPVGITS 195 (300)
T ss_dssp -C-EEE------------EECS----STTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEEEEE
T ss_pred -C-EEE------------ccCC----CCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCC-CCCcceEEE
Confidence 1 101 1111 13456899999999997777766789999999443222222222 446788999
Q ss_pred cCCCCCCcceEEEcc---eeEEEeCCCceEEEE-ecCCCccE--EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeec
Q 001165 369 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 441 (1134)
Q Consensus 369 sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~-~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g 441 (1134)
++++ ..+++.. .+..|+.. ++.... ...+...+ ++++. ++..++...++.+..++. .+...
T Consensus 196 d~~g----~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~------ 263 (300)
T 2qc5_A 196 GNDG----ALWFVEIMGNKIGRITTT-GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ------ 263 (300)
T ss_dssp CTTS----SEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE------
T ss_pred CCCC----CEEEEccCCCEEEEEcCC-CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE------
Confidence 9887 6666532 68888884 343332 22222333 34444 554444444455655553 11110
Q ss_pred CCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEc
Q 001165 442 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 490 (1134)
Q Consensus 442 ~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~ 490 (1134)
.. ........+.+++++++|+..++.. .+...+|.
T Consensus 264 ---------~~----~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~p 298 (300)
T 2qc5_A 264 ---------EY----QLQTENAEPHGITFGKDGSVWFALK-CKIGKLNL 298 (300)
T ss_dssp ---------EE----ECCSTTCCCCCEEECTTSCEEEECS-SEEEEEEE
T ss_pred ---------EE----ECCccCCccceeEeCCCCCEEEEcc-CceEEeCC
Confidence 00 0111223467899999998655444 43336664
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.69 E-value=3.1e-06 Score=94.30 Aligned_cols=146 Identities=8% Similarity=-0.013 Sum_probs=93.4
Q ss_pred cccEEEEEEcCCCCeEEEEEcC---------CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE-EEeeeC
Q 001165 208 SSAIIWLELCLPMRLLFVLYSN---------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL-AVGTRR 277 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sD---------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll-AsG~~d 277 (1134)
...+.++.++|+|++.+....+ +...++.++.... ...+. .+......++|+|+++.+ ++.+.+
T Consensus 97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~----~~~~~pngi~~spdg~~lyv~~~~~ 170 (297)
T 3g4e_A 97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--VKKYF----DQVDISNGLDWSLDHKIFYYIDSLS 170 (297)
T ss_dssp SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--EEEEE----EEESBEEEEEECTTSCEEEEEEGGG
T ss_pred CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--EEEEe----eccccccceEEcCCCCEEEEecCCC
Confidence 3557899999999966654332 2234444442211 11111 112346789999999865 556668
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
+.|.+|+++...+... ..+....+.. +.+....++++++|+..++.+.++.|.+||..+++++..+..
T Consensus 171 ~~i~~~~~d~~~G~~~--------~~~~~~~~~~----~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQIS--------NRRSVYKLEK----EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TEEEEEEECTTTCCEE--------EEEEEEECCG----GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CcEEEEeccCCCCccc--------CcEEEEECCC----CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 9999999852211110 0111122211 345678899999999888888888999999987788877765
Q ss_pred CCCCceeeeEEc-CCC
Q 001165 358 ISLSSISSPIVK-PNQ 372 (1134)
Q Consensus 358 h~~~~V~sv~~s-p~~ 372 (1134)
+ ...+++++|. |++
T Consensus 239 p-~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 239 P-VDKTTSCCFGGKNY 253 (297)
T ss_dssp S-SSBEEEEEEESGGG
T ss_pred C-CCCceEEEEeCCCC
Confidence 4 4568889997 665
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.62 E-value=6.9e-07 Score=103.19 Aligned_cols=187 Identities=9% Similarity=0.025 Sum_probs=117.1
Q ss_pred CCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..+..+++++++.++++|+.++ +++|++++....... . . +.-+.... . .+.+ |+.|+| ||+.|+++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~-~--~-~~~~~~~~-~----~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS-D--S-TPLTFKWE-K----EIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS-S--S-CCCCCSEE-E----ECTT-EEEEEE--ETTEEEEE-
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc-c--c-ccccceEE-e----eCCC-eeEEEE--CCCEEEEE-
Confidence 4578899999999999999884 556998742210000 0 0 00000001 1 1556 999999 99999999
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecCCEEE
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL 416 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~k~l~ 416 (1134)
.+++|++||+.......+...+ ...+.+ ++.+ ...++
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~-~~~v~~-------------------i~~~-----------------------~p~~a 140 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSF-EKPVFQ-------------------LKNV-----------------------NNTLV 140 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEEC-SSCEEE-------------------EEEC-----------------------SSEEE
T ss_pred cCCcEEEEEchhhhccCcccee-ecceee-------------------EEec-----------------------CCCEE
Confidence 8899999999764422222222 111110 0100 11256
Q ss_pred eeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCc-
Q 001165 417 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 494 (1134)
Q Consensus 417 S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~- 494 (1134)
.++.||++.+|++..+... .+...|++++|||+| +++|..||.+ +|+..++.
T Consensus 141 v~~~dG~L~v~dl~~~~~~------------------------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 141 ILNSVNDLSALDLRTKSTK------------------------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp EEETTSEEEEEETTTCCEE------------------------EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred EEECCCCEEEEEccCCccc------------------------cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence 6788999999997644321 123469999999999 7889999999 99998876
Q ss_pred --EEEeCCcc--ce---eeeEEEEEEeeCCEEEEEEEec
Q 001165 495 --WRVFGDIT--QE---QKIQSKGLLWLGKIIVVCNYID 526 (1134)
Q Consensus 495 --Wk~F~~~~--~e---~~~~v~gl~W~~~~lv~~~~~~ 526 (1134)
-+.+.... +| .++.|.++.|..+......|..
T Consensus 195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 33442211 11 2478999999976544444543
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.58 E-value=3e-05 Score=89.49 Aligned_cols=115 Identities=8% Similarity=-0.147 Sum_probs=73.9
Q ss_pred EEEEcCCCCeEEEEEc----------CCeEEEEEeccCCccccceec-ccccCCCCCeEEEEECCCCCEEEEeee--CCe
Q 001165 213 WLELCLPMRLLFVLYS----------NGQLMSCSVSKKGLKLAEFIK-IDKELGSGDAVCASIAPEQQILAVGTR--RGV 279 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~s----------DG~v~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~va~spdg~llAsG~~--dg~ 279 (1134)
.+.+||+++.++++.. ++.+.+++.........-... ............++|+|||++|.+++. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 7899999999888863 567888877543221100000 000001123457899999999998874 578
Q ss_pred EEEEeccccccceeeeeeeccCcceEEEE-eecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecCCCeeE
Q 001165 280 VELYDLAESASLIRTVSLYDWGMREVYYT-FCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLM 352 (1134)
Q Consensus 280 V~lwd~~~~~~~~~~l~l~~~~~~~~l~~-l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~~~~l~ 352 (1134)
|.++| + +++.+.+ +.. .+ |+.+.|+|. .+++.+.||.+.++|. ++...
T Consensus 150 v~viD-~---------------t~~~~~~~i~~-----~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 150 VGLVV-Q---------------GGSSDDQLLSS-----PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred EEEEE-C---------------CCCEEeEEcCC-----Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 99999 8 5665554 321 12 245667664 5566778899999999 66555
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.58 E-value=1.1e-05 Score=89.79 Aligned_cols=221 Identities=8% Similarity=-0.080 Sum_probs=126.1
Q ss_pred EEEEEEcCCCCeEEEE-EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc
Q 001165 211 IIWLELCLPMRLLFVL-YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~-~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~ 289 (1134)
.-...|+|+.+.+.++ ..+++++.|+....... .. .....+.+++++|+|++++. . ++.|.+||.+
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~-----~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~--- 81 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RV-----TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWK--- 81 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EE-----ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETT---
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EE-----eCCCceEEEEECCCCCEEEE-E-CCeEEEEECC---
Confidence 3467889976655554 45788888876543221 11 12356889999999996654 3 6789999987
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC---------CcEEEEecCC-CeeEEEeccCC
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS---------RGLTVWSVSG-CRLMSTIRQIS 359 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D---------g~I~vWdv~~-~~l~~tl~~h~ 359 (1134)
+++...............+++++++|||++.++...+ ..-+||.+.. +.......+
T Consensus 82 ------------~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-- 147 (297)
T 3g4e_A 82 ------------EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-- 147 (297)
T ss_dssp ------------TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--
T ss_pred ------------CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--
Confidence 3322111110000122458899999999977765432 3345665542 333222222
Q ss_pred CCceeeeEEcCCCCCCcceE-EEcc---eeEEEeC--CCceE-----EEEecCCCccE--EEEec-CCEEEeeecCCcEE
Q 001165 360 LSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDE--YGYRL-----YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTY 425 (1134)
Q Consensus 360 ~~~V~sv~~sp~~~~~~~~l-~sgs---~i~~W~~--~~~~l-----~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~ 425 (1134)
....+.++|+|++ +.+ ++.. .+..|+. .++.+ +.....+.... ++++. ++..++...++.+.
T Consensus 148 ~~~pngi~~spdg----~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 148 VDISNGLDWSLDH----KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVI 223 (297)
T ss_dssp ESBEEEEEECTTS----CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred cccccceEEcCCC----CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEE
Confidence 3356789999998 533 3332 6777875 44443 22222111222 44555 55555555555666
Q ss_pred eeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEc-CCCCEEEEEeC
Q 001165 426 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS-KDGMFLAVAGL 482 (1134)
Q Consensus 426 ~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~S-pdG~~LAsgg~ 482 (1134)
.|+..+++. ...+..+...+++++|+ ||++.|.+++.
T Consensus 224 ~~d~~tG~~--------------------~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 224 RLDPVTGKR--------------------LQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECTTTCCE--------------------EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEcCCCceE--------------------EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 666433322 22333344568999998 89998877664
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.56 E-value=2.4e-06 Score=107.19 Aligned_cols=244 Identities=12% Similarity=0.008 Sum_probs=137.4
Q ss_pred CcccEEEEEEcCCCCeEEEEEcC-C----eEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCe--
Q 001165 207 ISSAIIWLELCLPMRLLFVLYSN-G----QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGV-- 279 (1134)
Q Consensus 207 ~~~~V~~i~fsp~~~~la~~~sD-G----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~-- 279 (1134)
+...+..++|||||+.+|.+.+. | .++++++.+...... .+. + .....++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~---~---~k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK---D---VKFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE---E---EESCCCEEE-TTTEEEEEESSCCC-
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC---C---ceeccEEEe-CCCEEEEEEecCccc
Confidence 34578889999999998876542 3 477777765442211 111 0 112357899 9999999887743
Q ss_pred -----------EEEEeccccccceeeeeeeccCcceEEEEeecccCC-CCcCeEEEEECCCCCEEEEEEC----CCcEEE
Q 001165 280 -----------VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMD-DTGPVSCIAWTPDNSAFAVGWK----SRGLTV 343 (1134)
Q Consensus 280 -----------V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~-h~g~V~~l~fSPDG~~Lasg~~----Dg~I~v 343 (1134)
|++|++...... ..++.. ... |...+..+.|||||++|+.... ++.|.+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~-----------~~~v~~----~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQED-----------DRLVFG----AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp ------CCCCEEEEEETTSCGGG-----------CEEEES----CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred ccccccCCCcEEEEEECCCCccc-----------ceEEEe----cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 888888732211 111111 112 3445788999999998855432 247899
Q ss_pred EecCCCe-eEEEeccCCCCceeeeEEcCCCCCCcceEEEc------ceeEEEeCCCceE--EEEecCCCccEEEEec-CC
Q 001165 344 WSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG------TSMMQWDEYGYRL--YAIEEGSSERVLIFSF-GK 413 (1134)
Q Consensus 344 Wdv~~~~-l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg------s~i~~W~~~~~~l--~~~~~~h~~~v~~~s~-~k 413 (1134)
||+.++. ....+..+ ....... +++++. ..++.. ..+..|++.++.. +.....|...+..+++ ++
T Consensus 264 ~d~~~~~~~~~~l~~~-~~~~~~~-~~~~g~---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~ 338 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGD-LDADVSL-VDNKGS---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSG 338 (693)
T ss_dssp EETTSTTCCCEEEECS-SSSCEEE-EEEETT---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETT
T ss_pred EECCCCCCceEEEeCC-CCceEEE-EeccCC---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECC
Confidence 9987652 23344433 2333333 445541 232221 1677888877543 2222233333337777 66
Q ss_pred EEEeee-cCC--cEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCC----CeE
Q 001165 414 CCLNRG-VSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI 486 (1134)
Q Consensus 414 ~l~S~s-~d~--ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~d----G~i 486 (1134)
.++... .++ .+++|++. +... ..+. ......+..++++|+|+.++....+ +.+
T Consensus 339 ~lv~~~~~~g~~~l~~~d~~-g~~~--------------~~l~-----~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 339 YLFAEYMVDATARVEQFDYE-GKRV--------------REVA-----LPGLGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp EEEEEEEETTEEEEEEECTT-SCEE--------------EEEC-----CSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred EEEEEEEECCeeEEEEEECC-CCee--------------EEee-----cCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 555443 444 34455432 1110 0011 1123346677888999887766554 677
Q ss_pred -EEEccCCcEEEe
Q 001165 487 -LYDIRQKKWRVF 498 (1134)
Q Consensus 487 -lwd~~sg~Wk~F 498 (1134)
.||+.+++.+.+
T Consensus 399 ~~~d~~~g~~~~l 411 (693)
T 3iuj_A 399 YRFEPKSGAISLY 411 (693)
T ss_dssp EEECTTTCCEEEE
T ss_pred EEEECCCCeEEEE
Confidence 888877765544
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.56 E-value=1.7e-06 Score=99.98 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=92.2
Q ss_pred EEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecccccc
Q 001165 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS 290 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~ 290 (1134)
|+.++| +++.++++ .+|.+.+|++....... .... ....+.++.+.+. -+|+++.||++.+||++
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~--~~~~----~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~---- 154 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFR--TVTS----FEKPVFQLKNVNN--TLVILNSVNDLSALDLR---- 154 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEE--EEEE----CSSCEEEEEECSS--EEEEEETTSEEEEEETT----
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccC--ccce----eecceeeEEecCC--CEEEEECCCCEEEEEcc----
Confidence 999999 89999988 88999999987654211 1111 1234556655554 28899999999999998
Q ss_pred ceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCee--EEEe------cc--CCC
Q 001165 291 LIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTI------RQ--ISL 360 (1134)
Q Consensus 291 ~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l--~~tl------~~--h~~ 360 (1134)
.+.... +...|+|++|||+| ++.|..||++++|+..+..+ ..++ .. .+.
T Consensus 155 -----------~~~~~~--------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~ 213 (388)
T 1xip_A 155 -----------TKSTKQ--------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE 213 (388)
T ss_dssp -----------TCCEEE--------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred -----------CCcccc--------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence 333221 34579999999999 78899999999999988776 6667 21 124
Q ss_pred CceeeeEEcCCC
Q 001165 361 SSISSPIVKPNQ 372 (1134)
Q Consensus 361 ~~V~sv~~sp~~ 372 (1134)
..|.++.|.+++
T Consensus 214 ~~V~sI~wl~~~ 225 (388)
T 1xip_A 214 YSPLSVTILSPQ 225 (388)
T ss_dssp SEEEEEEESSSS
T ss_pred eeEEEEEEecCC
Confidence 568888887776
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.55 E-value=1.7e-06 Score=108.50 Aligned_cols=237 Identities=12% Similarity=0.122 Sum_probs=130.8
Q ss_pred EEEeecCeEEEEEc----C--CeEEEeecCCcceeEEEeecChhhHHhhcc-eeEEEEcCCceEEEEEeCCCE-------
Q 001165 25 IYFKVNNGLLLIAS----P--CHIELWSSSQHKVRLGKYKRDSESVQREGE-NLQAVWSPDTKLIAVVTSSLY------- 90 (1134)
Q Consensus 25 v~fS~dg~llAs~s----~--~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~-~~~v~wSPDg~~Lav~t~dg~------- 90 (1134)
+++||||+++|.+. + .+|+|||+..+. .+... ..+. ...++|| ||+.|+.++.+..
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~~~--------~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-PLETP--------LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-EEEEE--------EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCC-CCccc--------cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 68999999988543 1 379999997433 22111 0112 3578999 9999999988743
Q ss_pred ------EEEEEEEecCc--ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCC----cEEEEe
Q 001165 91 ------LHIFKVQITEK--SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG----SLYSIS 158 (1134)
Q Consensus 91 ------l~lw~l~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg----~v~~~~ 158 (1134)
|.+|++.++.. .+....... ... ...-..+++||+.|++....+ .+++++
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~-------------~~~-----~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPA-------------QHH-----RYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGG-------------GCC-----SEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCC-------------CCe-----EEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 66676643321 111100000 000 001124677888887765432 444443
Q ss_pred cCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcC----CeEEE
Q 001165 159 WKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN----GQLMS 234 (1134)
Q Consensus 159 wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sD----G~v~l 234 (1134)
.+........ +..+....... ++++++.+++.++. ++++.
T Consensus 266 ~~~~~~~~~~-----------------------------------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 266 LSQENAPLLT-----------------------------------VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp TTSTTCCCEE-----------------------------------EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred CCCCCCceEE-----------------------------------EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence 3221101110 11111222222 56777777766653 56777
Q ss_pred EEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee-CC--eEEEEeccccccceeeeeeeccCcceEEEEeec
Q 001165 235 CSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-RG--VVELYDLAESASLIRTVSLYDWGMREVYYTFCR 311 (1134)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-dg--~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~ 311 (1134)
+++........+.+.+ +...+. .|+|+++.|+.... +| .|++|+++ .+. .+.+.
T Consensus 310 ~d~~~~~~~~~~~l~~----~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~---------------g~~-~~~l~- 366 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIP----ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE---------------GKR-VREVA- 366 (693)
T ss_dssp EETTSCCGGGCEEEEC----CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT---------------SCE-EEEEC-
T ss_pred EeCCCCCccccEEEec----CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC---------------CCe-eEEee-
Confidence 7765543211122221 223344 89999988776654 54 67888776 221 12221
Q ss_pred ccCCCCcCeEEEEECCCCCEEEEEECC----CcEEEEecCCCe
Q 001165 312 YSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCR 350 (1134)
Q Consensus 312 ~~~~h~g~V~~l~fSPDG~~Lasg~~D----g~I~vWdv~~~~ 350 (1134)
..+.+.|..++++||+..++....+ +++..||+.++.
T Consensus 367 --~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 367 --LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 1145678888999999988776655 789999987765
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.54 E-value=8.8e-06 Score=95.27 Aligned_cols=225 Identities=10% Similarity=-0.031 Sum_probs=124.4
Q ss_pred ceeEEEEcCCceEEEEEeCCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEE
Q 001165 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (1134)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~ 148 (1134)
....++|+|||+.+++...++.|+.|+++........ .. ..... .++.++++.++++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~----------------~~------~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH----------------PG------FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE----------------ET------CCBCB-CEECTTSSEEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee----------------cc------CCCCc-eeEecCCCcEEEE
Confidence 4568999999998888777889999988542111110 00 00112 4667778888888
Q ss_pred ecCC--cEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEE
Q 001165 149 LSDG--SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1134)
Q Consensus 149 t~dg--~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~ 226 (1134)
..++ .++.+.-++...... +.. ........+.+++++|+.+.+.++
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~-----------~g~---------------------~~~~~~~~p~~iav~p~~g~lyv~ 236 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTR-----------IGQ---------------------LGSTFSGKIGAVALDETEEWLYFV 236 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEE-----------EEE---------------------CCTTSCSCCCBCEECTTSSEEEEE
T ss_pred ecCCCceEEEEEcCCCceeEE-----------eee---------------------ccchhcCCcEEEEEeCCCCeEEEE
Confidence 7765 565544332211000 000 001123445678899965555667
Q ss_pred EcCCeEEEEEeccCCccccceecccccCCCC-CeE-EEEECC-CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSG-DAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 227 ~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~va~sp-dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
..+|+++.++............... .... ... .++|+| ++.++++-..++.|+.|+.+.. ...+.-.....+
T Consensus 237 d~~~~I~~~d~~~~~~~~~~~~~~~--g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g 311 (409)
T 3hrp_A 237 DSNKNFGRFNVKTQEVTLIKQLELS--GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKT 311 (409)
T ss_dssp CTTCEEEEEETTTCCEEEEEECCCC--SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCS
T ss_pred ECCCcEEEEECCCCCEEEEeccccc--CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCC
Confidence 7788888888754332111000000 0111 112 899999 5777777778899999987621 111100000000
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CCCcEEEEecCCCeeEEEecc
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
..-.. .....-.....++++|||++.++-+ .++.|+.|++.++. +.++.+
T Consensus 312 ~~dg~---~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g 362 (409)
T 3hrp_A 312 VQDGL---REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAG 362 (409)
T ss_dssp CBCEE---GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEE
T ss_pred cCCCc---ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeC
Confidence 00000 0000123478999999999777777 78999999976665 344443
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.48 E-value=3.4e-05 Score=87.11 Aligned_cols=219 Identities=10% Similarity=-0.038 Sum_probs=120.9
Q ss_pred EEEEEEcCCCCeEEEE-EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc
Q 001165 211 IIWLELCLPMRLLFVL-YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~-~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~ 289 (1134)
.....|+|+++.+.++ ..++.++.|+....... .. .....+.+++++|+|+++++. ++.|.+||.+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~-----~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~--- 117 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT---VH-----ALPFMGSALAKISDSKQLIAS--DDGLFLRDTA--- 117 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EE-----ECSSCEEEEEEEETTEEEEEE--TTEEEEEETT---
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EE-----ECCCcceEEEEeCCCeEEEEE--CCCEEEEECC---
Confidence 3457889986655554 45678888876542211 11 112568899999999987754 3458889876
Q ss_pred cceeeeeeeccCcceEEEEeecccCC-CCcCeEEEEECCCCCEEEEEECC------CcEEEEecCCCeeEEEeccCCCCc
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMD-DTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~-h~g~V~~l~fSPDG~~Lasg~~D------g~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
+++... +...... ....+++++++|||+..++...+ +.|..++ +++......+ ...
T Consensus 118 ------------~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~~ 180 (326)
T 2ghs_A 118 ------------TGVLTL-HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--ISI 180 (326)
T ss_dssp ------------TCCEEE-EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ESS
T ss_pred ------------CCcEEE-EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--Ccc
Confidence 232211 1100001 12468999999999977765432 3455555 4443322222 235
Q ss_pred eeeeEEcCCCCCCcceE-EEcc---eeEEEeCC--Cc-e-----EEEEecCCCccE--EEEec-CCEEEeeecCCcEEee
Q 001165 363 ISSPIVKPNQDCKYEPL-MSGT---SMMQWDEY--GY-R-----LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYAR 427 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l-~sgs---~i~~W~~~--~~-~-----l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~w 427 (1134)
.+.++++|++ +.+ ++.. .+..|+.. ++ + .+.......... +.++. +...++...++.+..|
T Consensus 181 ~~~i~~s~dg----~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 181 PNSICFSPDG----TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EEEEEECTTS----CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred cCCeEEcCCC----CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 6789999998 543 3322 67888864 44 2 232222111122 33333 4444433334455555
Q ss_pred eeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEc-CCCCEEEEEeCCC
Q 001165 428 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS-KDGMFLAVAGLHG 484 (1134)
Q Consensus 428 ~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~S-pdG~~LAsgg~dG 484 (1134)
+. .++. ...+..+...+.+++|+ ||++.|.+++.++
T Consensus 257 d~-~g~~--------------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 257 DT-DGNH--------------------IARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CT-TCCE--------------------EEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CC-CCCE--------------------EEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 43 1111 12233344568999998 9998887665443
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.46 E-value=2e-05 Score=92.26 Aligned_cols=249 Identities=10% Similarity=0.008 Sum_probs=138.9
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC--eEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG--VVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg--~V~lwd~~ 286 (1134)
.....|+++++++++++-..+++++.|+........ +.. ...... ++|+|+++.|.++..++ .|.+|+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~----~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHP----GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEE----TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eec----cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 356789999999977776667889988775432211 111 112233 89999999888887766 77777766
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEE----eccC-CCC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST----IRQI-SLS 361 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~t----l~~h-~~~ 361 (1134)
.. .....+......+...+.+++++|++..|.++..++.|..||..++..... ..+. +..
T Consensus 203 ~~---------------~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 203 SG---------------WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTN 267 (409)
T ss_dssp GT---------------TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred CC---------------ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCC
Confidence 21 111111000111335578899999544455577788999999987653221 1111 111
Q ss_pred ceeeeEEcCC-CCCCcceEEEcc---eeEEEeCCCceEEEEecC----CC---------ccE--EEEec-CCEEEeee-c
Q 001165 362 SISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG----SS---------ERV--LIFSF-GKCCLNRG-V 420 (1134)
Q Consensus 362 ~V~sv~~sp~-~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~----h~---------~~v--~~~s~-~k~l~S~s-~ 420 (1134)
+.+.++++|+ + ..+++.. ++..|+.++......... .. ... +++++ ++..++-. .
T Consensus 268 P~~~ia~~p~~g----~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~ 343 (409)
T 3hrp_A 268 PGPYLIYYFVDS----NFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK 343 (409)
T ss_dssp SCCEEEEETTTT----EEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred ccccEEEeCCCC----EEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence 1238999995 4 5555533 888898876532222111 00 111 56666 77666766 6
Q ss_pred CCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEc
Q 001165 421 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 490 (1134)
Q Consensus 421 d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~ 490 (1134)
++.|+.|+...+ .+..+.+.... ..+... +. ....-.....++++|+|+.+++-..++.| .+++
T Consensus 344 ~~~I~~~~~~~G--~v~~~~g~~~~-~g~~~g--~~-~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 344 GYCLRKLDILDG--YVSTVAGQVDV-ASQIDG--TP-LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCEEEEEETTTT--EEEEEEECTTC-BSCCCB--ST-TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEEEEECCCC--EEEEEeCCCCC-CCcCCC--Ch-hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 777877774333 22222222000 000000 00 00011235789999998777766666666 5543
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.45 E-value=3.2e-06 Score=96.38 Aligned_cols=263 Identities=9% Similarity=0.024 Sum_probs=132.7
Q ss_pred EEEeecCeEEEEEc---CCeEEEeecCCcceeEEEeecC-hhhHHhhcceeEEEEcCCceEEEEEeC-----CCEEEEEE
Q 001165 25 IYFKVNNGLLLIAS---PCHIELWSSSQHKVRLGKYKRD-SESVQREGENLQAVWSPDTKLIAVVTS-----SLYLHIFK 95 (1134)
Q Consensus 25 v~fS~dg~llAs~s---~~~l~IW~~~~~~~~l~~~~r~-~~sl~~~G~~~~v~wSPDg~~Lav~t~-----dg~l~lw~ 95 (1134)
|++++||++|++.. ++.++||.++.+. +..+... .....+......++++|||+.+++-+. ++.|.+||
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d 99 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWD 99 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEE
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEE
Confidence 78999999998864 2336777775232 1111100 000012345789999999997777654 57899998
Q ss_pred EEecC-cceecCCCCCCCcceeeEEEeeceeeccccccceE--EEeeeCCCeEEEEe----cCCcEEEEecCCcccccee
Q 001165 96 VQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGL----SDGSLYSISWKGEFYGAFE 168 (1134)
Q Consensus 96 l~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V--~~~s~d~~~llv~t----~dg~v~~~~wd~~~~~~~~ 168 (1134)
+..+. ...+. ..... ....... ..+.+++..++++. .++.|.+++++.......
T Consensus 100 ~~tg~~~~~~~-~~~~~-----------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~- 160 (343)
T 2qe8_A 100 TLNNQLSRVIY-LPPPI-----------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV- 160 (343)
T ss_dssp TTTTEEEEEEE-CCTTT-----------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE-
T ss_pred CCCCeEEEEEE-CChhh-----------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE-
Confidence 76432 11110 00000 0000011 13333455666654 355777666542211110
Q ss_pred ccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccccee
Q 001165 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1134)
Q Consensus 169 ~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~ 248 (1134)
+..++ ...... ..+.+++..+.+...+|++..|
T Consensus 161 ~~~~~-----------------------------~~~~~~-----~~~~~~g~~~~~~~~~g~~~~~------------- 193 (343)
T 2qe8_A 161 LQGYP-----------------------------GIAPED-----IDLVIDGVPVQIGQPDGTVIRP------------- 193 (343)
T ss_dssp CTTCT-----------------------------TTSCCS-----CCCEETTEECBEECTTSCEECC-------------
T ss_pred ecCCC-----------------------------cccccc-----cceeECCEEEEeccCCCceece-------------
Confidence 00000 000000 1223344444444555554321
Q ss_pred cccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE--EeecccCCCCcCeEEEEEC
Q 001165 249 KIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY--TFCRYSMDDTGPVSCIAWT 326 (1134)
Q Consensus 249 ~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~--~l~~~~~~h~g~V~~l~fS 326 (1134)
. ..+..++|+|+++.|.++..++. ++|.++........+. .++... ...+ +.+....++++
T Consensus 194 -----~--~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~-----~~~~~~~~~~~g----~~g~pdgia~d 256 (343)
T 2qe8_A 194 -----H--LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLT-----DAELGSKIERYS----EKPICDGISID 256 (343)
T ss_dssp -----C--CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCC-----HHHHHTTCEEEE----ECCSCSCEEEC
T ss_pred -----e--cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCC-----hhhhhcceEecc----cCCCCceEEEC
Confidence 1 23567999999998888776663 5555541100000000 000000 0001 34456679999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 327 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 327 PDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
+||+..++.+.++.|.+||..++...............++++.+++
T Consensus 257 ~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 257 KDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp TTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred CCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 9999999999999999999944443222222113456778887766
No 217
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.43 E-value=0.014 Score=73.97 Aligned_cols=382 Identities=9% Similarity=0.077 Sum_probs=199.3
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCccee
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ 104 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~~~~ 104 (1134)
+...++|++.+...++.|..|+...... ..+... .....+.++...++|...+ +|.++-|..|+........+
T Consensus 178 i~~d~~g~lwigt~~~Gl~~~~~~~~~~--~~~~~~----~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 178 TLYRQGDQIYIGTSTDGLYTYSITQKTF--EKVIPI----LGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp EEEEETTEEEEEESSSCEEEEETTTCCE--EECC--------CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEeCCCCeE--EEecCC----CCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 5567788887754455799998753221 111100 1234567788888887554 55443377777643211111
Q ss_pred cCCC-CCCCcceeeEEEeeceeeccccccceEEEeeeC-CCeEEEEecCCcEEEEecCCccccceeccccCCCccccccc
Q 001165 105 IGGK-QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1134)
Q Consensus 105 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d-~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i 182 (1134)
.... .+. ......|.++..| .+.+.+|+.+| +..++ .... .+.. ....
T Consensus 251 ~~~~~~~~-----------------~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~--~~~~-~~~~---------~~~~ 300 (795)
T 4a2l_A 251 LHSPSNPK-----------------SISSNYIRSLAMDSQNRLWIGTFND-LNIYH--EGTD-SFAS---------YSSN 300 (795)
T ss_dssp CCCTTCTT-----------------SCSCSBEEEEEECTTSCEEEEESSC-EEEEE--TTTT-EEEE---------ECCC
T ss_pred ecCCCCcc-----------------ccCCCeEEEEEEcCCCCEEEEeCCh-hheEc--CCCC-eEEE---------EecC
Confidence 1000 000 0012347777766 45788888775 55443 2221 1110 0000
Q ss_pred cccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEE
Q 001165 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCA 262 (1134)
Q Consensus 183 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 262 (1134)
+. ....-....|.++..+++|++. +++.+|-+..++................-.....+.++
T Consensus 301 ~~-----------------~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i 362 (795)
T 4a2l_A 301 PV-----------------ENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCI 362 (795)
T ss_dssp TT-----------------STTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEE
T ss_pred CC-----------------CCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEE
Confidence 00 0011124568999999988754 35555667666543221111000000001123568899
Q ss_pred EECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc---c-CCCCcCeEEEEECCCCCEEEEEECC
Q 001165 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY---S-MDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 263 a~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~---~-~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
...++|.+.+ |+.++-+..|+... ++...-.... . .-....|.++...++|+.|-.|..+
T Consensus 363 ~~d~~g~lWi-Gt~~~Gl~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~ 426 (795)
T 4a2l_A 363 VEDKDKNLWI-GTNDGGLNLYNPIT---------------QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA 426 (795)
T ss_dssp EECTTSCEEE-EESSSCEEEECTTT---------------CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEE-EECCCCeEEEcCCC---------------CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc
Confidence 9999887654 77777788888762 1111000000 0 0023579999999999856677787
Q ss_pred CcEEEEecCCCeeEEEecc----CCCCceeeeEEcCCCCCCcceEEEc-ceeEEEeCCCceEEEEecC------CCccEE
Q 001165 339 RGLTVWSVSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEG------SSERVL 407 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~~----h~~~~V~sv~~sp~~~~~~~~l~sg-s~i~~W~~~~~~l~~~~~~------h~~~v~ 407 (1134)
+++.++|..+++.. .+.. .....|.++...+++ ..+++. ..+..|++++++....... +...|.
T Consensus 427 ~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 427 GGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEG----NLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp TEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSS----CEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred CceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCC----CEEEEecCceeEEeCCCCeEEEccccccccccCCceEE
Confidence 89999999876543 2321 113468888877776 665543 3677788887765443211 113343
Q ss_pred EEec---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCC
Q 001165 408 IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 484 (1134)
Q Consensus 408 ~~s~---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG 484 (1134)
.+.. ++.-+.. . +.+..++...+ .. .+.. ....-...+..|.++..+++|+..+ |+..|
T Consensus 502 ~i~~d~~g~lWigt-~-~Gl~~~~~~~~--~~-~~~~------------~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G 563 (795)
T 4a2l_A 502 TLFRDSHKRLWIGG-E-EGLSVFKQEGL--DI-QKAS------------ILPVSNVTKLFTNCIYEASNGIIWV-GTREG 563 (795)
T ss_dssp EEEECTTCCEEEEE-S-SCEEEEEEETT--EE-EECC------------CSCSCGGGGSCEEEEEECTTSCEEE-EESSC
T ss_pred EEEECCCCCEEEEe-C-CceEEEeCCCC--eE-EEec------------CCCCCCCCCCeeEEEEECCCCCEEE-EeCCC
Confidence 3322 3333222 2 23444443221 10 0000 0000011234689999999998655 45558
Q ss_pred eEEEEccCCcEEEeCC
Q 001165 485 LILYDIRQKKWRVFGD 500 (1134)
Q Consensus 485 ~ilwd~~sg~Wk~F~~ 500 (1134)
...||..+++++.|..
T Consensus 564 l~~~d~~~~~~~~~~~ 579 (795)
T 4a2l_A 564 FYCFNEKDKQIKRYNT 579 (795)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred ceeECCCCCcEEEeCC
Confidence 7799999998887753
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.41 E-value=1.1e-05 Score=92.66 Aligned_cols=120 Identities=8% Similarity=-0.002 Sum_probs=76.9
Q ss_pred cCCCCeEEEEEcCCeEEEEEeccCCccccceec-------ccccCCCCCeEEEEECCCCCEEEEeee-C--------CeE
Q 001165 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-------IDKELGSGDAVCASIAPEQQILAVGTR-R--------GVV 280 (1134)
Q Consensus 217 sp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~va~spdg~llAsG~~-d--------g~V 280 (1134)
+++++.+++++. |.+...+...........+. ...|. ......++++|+++.+.++.. + +.+
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~-p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR-SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE-ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc-cCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 566666666666 88888776432111100000 00010 011223689999987776543 2 356
Q ss_pred EEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEE-CCCcEEEEecCCCeeEEEeccC
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGW-KSRGLTVWSVSGCRLMSTIRQI 358 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~-~Dg~I~vWdv~~~~l~~tl~~h 358 (1134)
.++|+. +++.+.++.. . +....|+|+|||+ .+++.. .+++|.|+|+.+.+.+.++..+
T Consensus 297 ~ViD~~---------------t~~vv~~i~v----g-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 297 SSVTAS---------------VGQTSGPISN----G-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEESS---------------SCCEEECCEE----E-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred EEEECC---------------CCeEEEEEEC----C-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 699998 6666666543 1 2578999999998 456666 5899999999999999998754
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.38 E-value=7.6e-05 Score=84.22 Aligned_cols=140 Identities=9% Similarity=0.047 Sum_probs=86.9
Q ss_pred ccEEEEEEcCCCCeEEEEEc------CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE-eeeCCeEE
Q 001165 209 SAIIWLELCLPMRLLFVLYS------NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV-GTRRGVVE 281 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~s------DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs-G~~dg~V~ 281 (1134)
..+.++.++|+|++++.... .+.++.++ .... ..... +......++|+|+++.+.+ .+.++.|.
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~---~~~~~----~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV---TKLFA----DISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE---EEEEE----EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE---EEeeC----CCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 46889999999986654432 24455444 2111 11111 1134568999999986654 45578999
Q ss_pred EEeccc-cc-cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCC
Q 001165 282 LYDLAE-SA-SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 359 (1134)
Q Consensus 282 lwd~~~-~~-~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~ 359 (1134)
+|+++. .. ... ..+....+. ...+....++++++|+..++.+.+++|.+||.. ++.+..+..+
T Consensus 205 ~~d~~~~~Gl~~~---------~~~~~~~~~----~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~- 269 (326)
T 2ghs_A 205 RVPLDARTGLPTG---------KAEVFIDST----GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVP- 269 (326)
T ss_dssp EEEBCTTTCCBSS---------CCEEEEECT----TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECS-
T ss_pred EEEcccccCCccc---------CceEEEECC----CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECC-
Confidence 999861 11 110 011111111 134567889999999988888888899999995 4556666544
Q ss_pred CCceeeeEEc-CCC
Q 001165 360 LSSISSPIVK-PNQ 372 (1134)
Q Consensus 360 ~~~V~sv~~s-p~~ 372 (1134)
...+++++|+ |++
T Consensus 270 ~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 270 GKQTTCPAFIGPDA 283 (326)
T ss_dssp CSBEEEEEEESTTS
T ss_pred CCCcEEEEEecCCC
Confidence 3457888887 665
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.27 E-value=6.7e-05 Score=85.30 Aligned_cols=250 Identities=8% Similarity=-0.027 Sum_probs=129.0
Q ss_pred ccEEEEEEcCCCCeEEEEE--cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee-----CCeEE
Q 001165 209 SAIIWLELCLPMRLLFVLY--SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-----RGVVE 281 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~--sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-----dg~V~ 281 (1134)
.....|+++|+++.+++.. .+|.+.+|.++..............-.+...+.+++++|++++.++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 4678899999999888754 3352344444321111000000000012356889999999998887654 57899
Q ss_pred EEeccccccceeeeeeeccCcceEEEEeecc--cCCCCcCeEEEEECCCCC-EEEEEE---CCCcEEEEecCCCeeEEEe
Q 001165 282 LYDLAESASLIRTVSLYDWGMREVYYTFCRY--SMDDTGPVSCIAWTPDNS-AFAVGW---KSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 282 lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~--~~~h~g~V~~l~fSPDG~-~Lasg~---~Dg~I~vWdv~~~~l~~tl 355 (1134)
+||++ +++.++++... ...+...+..++++|++. ..++.. .+++|.+||..+++....+
T Consensus 97 ~~d~~---------------tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 97 AWDTL---------------NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEETT---------------TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEECC---------------CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 99988 55544443310 011334578999998654 445555 6789999999888777666
Q ss_pred ccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeee
Q 001165 356 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 356 ~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~ 431 (1134)
.+|....-....+.+++ ..+.+.. ++..|.. ... =+++++ ++.+..+..++. ++|.+..
T Consensus 162 ~~~~~~~~~~~~~~~~g----~~~~~~~~~g~~~~~~~-----------~~~-gia~s~dg~~ly~~~~~~~-~l~~~~~ 224 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDG----VPVQIGQPDGTVIRPHL-----------GVN-GIVLDAENEWLYLSPMHST-SMYRIKS 224 (343)
T ss_dssp TTCTTTSCCSCCCEETT----EECBEECTTSCEECCCC-----------CEE-EEEECTTSCEEEEEESSCS-EEEEEEH
T ss_pred cCCCcccccccceeECC----EEEEeccCCCceeceec-----------ccc-eeEeccCCCEEEEEeCCCC-eEEEEEH
Confidence 54311000001222222 1111100 1111210 000 145555 555544444332 3444321
Q ss_pred CCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccCCcEEEe
Q 001165 432 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 498 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~sg~Wk~F 498 (1134)
.... .+.-.....+..+ ...++......++++++|+..++...++.| .||..+++...+
T Consensus 225 ~~~~----~~~~~~~~~~~~~----~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~ 284 (343)
T 2qe8_A 225 ADLS----NLQLTDAELGSKI----ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL 284 (343)
T ss_dssp HHHT----CTTCCHHHHHTTC----EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred HHhc----CCCCChhhhhcce----EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE
Confidence 1000 0000000000000 111233334578999999999988889999 999856765543
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.24 E-value=0.00065 Score=78.09 Aligned_cols=274 Identities=11% Similarity=-0.000 Sum_probs=158.0
Q ss_pred EEECCCCCEEEEeee-----CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 262 ASIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 262 va~spdg~llAsG~~-----dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
....|+++.+-+... +++|.++|.. +++.+.++.. -.++ . +++||||+++.++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~---------------t~~v~~~I~v----G~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE---------------AGRVIGMIDG----GFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETT---------------TTEEEEEEEE----CSSC-E-EEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECC---------------CCeEEEEEEC----CCCC-c-EEECCCCCEEEEEc
Confidence 456788887776654 6799999998 7777777654 3344 4 99999999887775
Q ss_pred ----------CCCcEEEEecCCCeeEEEeccCC------CCceeeeEEcCCCCCCcceE-EEc----ceeEEEeCCCceE
Q 001165 337 ----------KSRGLTVWSVSGCRLMSTIRQIS------LSSISSPIVKPNQDCKYEPL-MSG----TSMMQWDEYGYRL 395 (1134)
Q Consensus 337 ----------~Dg~I~vWdv~~~~l~~tl~~h~------~~~V~sv~~sp~~~~~~~~l-~sg----s~i~~W~~~~~~l 395 (1134)
.++.|.+||..+.+.+.++.-.. ...-..++++||+ +.+ ++. .++.++|..++++
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG----k~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG----KTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS----SEEEEEECSSSCEEEEEETTTTEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC----CEEEEEEcCCCCeEEEEECCCCcE
Confidence 35789999999999888874311 1245678999998 433 321 2788999999998
Q ss_pred EEEecCCCccEEEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceE-EEEE-cC
Q 001165 396 YAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ-HVAA-SK 472 (1134)
Q Consensus 396 ~~~~~~h~~~v~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~-~va~-Sp 472 (1134)
+....-. +....++. .+.+++.+.||+....++..... +.... ...+. + ...++. ..+| .+
T Consensus 173 v~tI~v~-g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~-v~~~~--------~~~~~-~-----~~~~~~~~~~~~~~ 236 (386)
T 3sjl_D 173 KRMLDVP-DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT-PEITH--------TEVFH-P-----EDEFLINHPAYSQK 236 (386)
T ss_dssp EEEEECC-SEEEEEEEETTEEEEEETTSCEEEEECCSSSC-CEEEE--------CCCCS-C-----TTSCBCSCCEEETT
T ss_pred EEEEECC-CcceeecCCCceeEEECCCCCEEEEECCCCCe-EEEee--------cceec-c-----ccccccccceeEcC
Confidence 8776431 11222333 55667888898877766533111 10000 00000 0 111221 1255 47
Q ss_pred CCCEEEEEeCCCeE-EEEccCC------cEEEeCCccceeeeEE-----EEEEeeCCEEEEEEEec-----CCCeeEEEE
Q 001165 473 DGMFLAVAGLHGLI-LYDIRQK------KWRVFGDITQEQKIQS-----KGLLWLGKIIVVCNYID-----SSNTYELLF 535 (1134)
Q Consensus 473 dG~~LAsgg~dG~i-lwd~~sg------~Wk~F~~~~~e~~~~v-----~gl~W~~~~lv~~~~~~-----~~~~~eLrl 535 (1134)
+|+++. .+.+|.+ +.|..++ +|..|.....+..... .++.=.++.+-++.... .+...+|-+
T Consensus 237 dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 237 AGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 887655 5568889 8998655 3444432111111111 12221234433331111 123467777
Q ss_pred EeCCCCCCcceeEEEecCCcc--EEEEecCC-EEEEEEc-CCeEEEEEE
Q 001165 536 YPRYHLDQSSLLCRKSLLAKP--IVMDVYED-YILVTYR-PFDVHIFHV 580 (1134)
Q Consensus 536 y~~~~ld~~~~~~~~~l~~~~--~~l~~~~d-~llv~~~-d~~i~l~~~ 580 (1134)
++.. ...++.+..+..++ +.++..+. .+.+... ++++.+++.
T Consensus 316 iD~~---t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 316 LDAK---TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp EETT---TCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred EECC---CCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 7764 33455555554433 45566665 3444333 678888865
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.20 E-value=8.1e-05 Score=82.93 Aligned_cols=104 Identities=8% Similarity=-0.021 Sum_probs=66.5
Q ss_pred cEEEEEEcCCCCeEEEEEcC------CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 210 AIIWLELCLPMRLLFVLYSN------GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sD------G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
....++|+|+++.+.++... ++++.+++............. ........+++.++|++.++. .+ .|.+|
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~---~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~ 263 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS---VPDGLPDGFCVDRGGWLWSSS-GT-GVCVF 263 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC---CSSSCCCSEEECTTSCEEECC-SS-EEEEE
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE---CCCCCCCeEEECCCCCEEEec-CC-cEEEE
Confidence 35678999999988887765 678888876432111111100 011334568899999965544 44 58888
Q ss_pred eccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC
Q 001165 284 DLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 284 d~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
+.+ ++.+..+.. +. .+.+++|+||++.|..+..++
T Consensus 264 ~~~----------------g~~~~~~~~----~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 264 DSD----------------GQLLGHIPT----PG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CTT----------------SCEEEEEEC----SS-CCCEEEECTTSCEEEEEETTE
T ss_pred CCC----------------CCEEEEEEC----CC-ceeEEEEeCCCCEEEEEcCCe
Confidence 875 333333332 23 488999999999888888754
No 223
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.18 E-value=0.014 Score=74.15 Aligned_cols=381 Identities=12% Similarity=0.073 Sum_probs=198.2
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecCh---hhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~---~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
+...++|.+.+...++.|.+|+...... ..+.... .++ ....+.++...++|... ++|.+| |.+|+.....-
T Consensus 220 i~~d~~g~lwigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~ 294 (795)
T 4a2l_A 220 ILQQSPTRIWVATEGAGLFLINPKTKEI--KNYLHSPSNPKSI-SSNYIRSLAMDSQNRLW-IGTFND-LNIYHEGTDSF 294 (795)
T ss_dssp EEEEETTEEEEEEBSSCEEEEETTTTEE--EEECCCTTCTTSC-SCSBEEEEEECTTSCEE-EEESSC-EEEEETTTTEE
T ss_pred EEEcCCCCEEEEECCCCeEEEeCCCCeE--EEeecCCCCcccc-CCCeEEEEEEcCCCCEE-EEeCCh-hheEcCCCCeE
Confidence 4456778877655556799999863322 2222111 111 12457888888888754 556665 77777543211
Q ss_pred ceecCCC-CCCCcceeeEEEeeceeeccccccceEEEeeeCC-CeEEEEecCCcEEEEecCCccccceeccccCCCcccc
Q 001165 102 SIQIGGK-QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1134)
Q Consensus 102 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~-~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i 179 (1134)
..+.... ... .-....|.++..|. +.+.+|+.++-+..+.-.......+
T Consensus 295 ~~~~~~~~~~~-----------------~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~------------ 345 (795)
T 4a2l_A 295 ASYSSNPVENG-----------------SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNI------------ 345 (795)
T ss_dssp EEECCCTTSTT-----------------SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEE------------
T ss_pred EEEecCCCCCC-----------------CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEE------------
Confidence 1111000 000 00123467777664 4688898877776653221110000
Q ss_pred ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceec-ccc-cCCCC
Q 001165 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-IDK-ELGSG 257 (1134)
Q Consensus 180 ~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~-~~~-~~~~~ 257 (1134)
...+. ...-....|.++..++++++.+ ++.+|-+..++............. ... -....
T Consensus 346 ~~~~~------------------~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (795)
T 4a2l_A 346 RNIPY------------------KNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSN 406 (795)
T ss_dssp CCCTT------------------SSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCS
T ss_pred cCCCC------------------CCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCc
Confidence 00000 0001234688998888887544 566656777665432211100000 000 01235
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
.+.+++..+++++|-+|+.++-+.+|+.+ +++...-.......+...|.++...++|+..+...
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~---------------~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~- 470 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRN---------------SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL- 470 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETT---------------TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCC---------------CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-
Confidence 68899998999856667877789999876 22211100000001345799999999998776554
Q ss_pred CCcEEEEecCCCeeEEEec-----cCCCCceeeeEEcCCCCCCcceEEEc-ceeEEEeCCCceEEEEec--C----CCcc
Q 001165 338 SRGLTVWSVSGCRLMSTIR-----QISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEE--G----SSER 405 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~-----~h~~~~V~sv~~sp~~~~~~~~l~sg-s~i~~W~~~~~~l~~~~~--~----h~~~ 405 (1134)
+++.+|+..+++...... ......|.++...+++ ..+++. ..+..|+..+++. .... . ....
T Consensus 471 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~ 544 (795)
T 4a2l_A 471 -SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK----RLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLF 544 (795)
T ss_dssp -SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC----CEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSC
T ss_pred -CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC----CEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCe
Confidence 689999988765432211 1112467888887777 666543 2566777776665 2210 0 1123
Q ss_pred EEEEe--c-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeC
Q 001165 406 VLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 482 (1134)
Q Consensus 406 v~~~s--~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~ 482 (1134)
|..+. . ++.-++.. . .+..++... .... ....... -.+..|.++..+++|+..+ ++.
T Consensus 545 i~~i~~d~~g~lWigT~-~-Gl~~~d~~~--~~~~-------------~~~~~~g--l~~~~i~~i~~d~~g~lWi-~t~ 604 (795)
T 4a2l_A 545 TNCIYEASNGIIWVGTR-E-GFYCFNEKD--KQIK-------------RYNTTNG--LPNNVVYGILEDSFGRLWL-STN 604 (795)
T ss_dssp EEEEEECTTSCEEEEES-S-CEEEEETTT--TEEE-------------EECGGGT--CSCSCEEEEEECTTSCEEE-EET
T ss_pred eEEEEECCCCCEEEEeC-C-CceeECCCC--CcEE-------------EeCCCCC--CchhheEEEEECCCCCEEE-EcC
Confidence 33222 2 33222221 2 233333211 1110 0000000 0133588999999997655 557
Q ss_pred CCeEEEEccCCcEEEeCC
Q 001165 483 HGLILYDIRQKKWRVFGD 500 (1134)
Q Consensus 483 dG~ilwd~~sg~Wk~F~~ 500 (1134)
+|...|+..+++++.|..
T Consensus 605 ~Gl~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 605 RGISCFNPETEKFRNFTE 622 (795)
T ss_dssp TEEEEEETTTTEEEEECG
T ss_pred CceEEEcCCCCcEEEcCC
Confidence 887799999888877753
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.18 E-value=0.00023 Score=79.18 Aligned_cols=159 Identities=12% Similarity=-0.012 Sum_probs=92.7
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE----eee--------
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV----GTR-------- 276 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs----G~~-------- 276 (1134)
..+..++++++++++++...++.+..++.++ ........... .....+..++++|+|++.++ |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~~~~~~~~~~~--~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADG-QAHLLVGRYAG--KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEECEETT--EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCCC-CEEEEEeccCC--CccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 4577899999999766555557788876542 11111000000 01134567899999998887 442
Q ss_pred -----CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC------CcEEEEe
Q 001165 277 -----RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWS 345 (1134)
Q Consensus 277 -----dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D------g~I~vWd 345 (1134)
.+.|..|+.+ +++..... + ....+.++|+|||+.|.++... +.|.+|+
T Consensus 163 ~~~~~~~~v~~~d~~---------------~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~ 221 (305)
T 3dr2_A 163 DPELAHHSVYRLPPD---------------GSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFA 221 (305)
T ss_dssp CCSSSCEEEEEECSS---------------SCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEE
T ss_pred ccccCCCeEEEEcCC---------------CCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEE
Confidence 2345555543 22211111 1 1235779999999988877665 6899999
Q ss_pred cCCCeeE--EEeccCCCCceeeeEEcCCCCCCcceEEEcc-eeEEEeCCCceE
Q 001165 346 VSGCRLM--STIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRL 395 (1134)
Q Consensus 346 v~~~~l~--~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l 395 (1134)
+.+..+. ..+..........+++++++ ..+++.. .+.+|++++..+
T Consensus 222 ~~~~~l~~~~~~~~~~~~~pdgi~~d~~G----~lwv~~~~gv~~~~~~g~~~ 270 (305)
T 3dr2_A 222 WRDGALHDRRHFASVPDGLPDGFCVDRGG----WLWSSSGTGVCVFDSDGQLL 270 (305)
T ss_dssp EETTEEEEEEEEECCSSSCCCSEEECTTS----CEEECCSSEEEEECTTSCEE
T ss_pred ecCCCccCCeEEEECCCCCCCeEEECCCC----CEEEecCCcEEEECCCCCEE
Confidence 8765421 11111112334567788887 6555433 788888865433
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.12 E-value=0.0023 Score=74.70 Aligned_cols=270 Identities=11% Similarity=0.028 Sum_probs=156.8
Q ss_pred CCCCEEEEeee-C----CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE----
Q 001165 266 PEQQILAVGTR-R----GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW---- 336 (1134)
Q Consensus 266 pdg~llAsG~~-d----g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~---- 336 (1134)
|+++.+.+... + ++|.++|.. +++.+.++.. -..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~---------------t~~vv~~I~v----G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS---------------TGRILGMTDG----GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT---------------TTEEEEEEEE----CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC---------------CCEEEEEEEC----CCCC--ceEECCCCCEEEEEecccc
Confidence 45554444443 2 699999998 7777777654 2345 799999999888876
Q ss_pred ------CCCcEEEEecCCCeeEEEeccC--C----CCceeeeEEcCCCCCCcceEE-Ec----ceeEEEeCCCceEEEEe
Q 001165 337 ------KSRGLTVWSVSGCRLMSTIRQI--S----LSSISSPIVKPNQDCKYEPLM-SG----TSMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 337 ------~Dg~I~vWdv~~~~l~~tl~~h--~----~~~V~sv~~sp~~~~~~~~l~-sg----s~i~~W~~~~~~l~~~~ 399 (1134)
.++.|.++|..+.+.+.++.-. . ......++++||+ +.+. +. .++.+.|+.+.+++...
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG----k~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN----KNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC----CEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 3678999999999888877421 0 1234678999998 4433 21 26788899998887655
Q ss_pred cCCCccEEEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCce-EEEEEcCCCCE
Q 001165 400 EGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMF 476 (1134)
Q Consensus 400 ~~h~~~v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V-~~va~SpdG~~ 476 (1134)
.-.. . ..+.+ .+..++.+.|+++...+...+.. .... ...+.....|+ ..+.++++|+.
T Consensus 217 ~v~g-~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v--~~~~--------------~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 217 DVPD-C-YHIFPASPTVFYMNCRDGSLARVDFADGET--KVTN--------------TEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp ECCS-E-EEEEEEETTEEEEEETTSSEEEEECCTTCC--EEEE--------------CCCCSCTTSCBCSCCEECTTTCE
T ss_pred EcCC-c-eeeccCCCcEEEEEcCCCCEEEEECCCCcE--EEEe--------------eeeeccCCCceeeEeeecCCCCE
Confidence 3211 1 12222 34555666777766555421111 0000 00011111121 13578999999
Q ss_pred EEEEeCCCeE-EEEccCCc------EEEeCCccceeeeEEEE---EEee--CCEEEEEEEecC-----CCeeEEEEEeCC
Q 001165 477 LAVAGLHGLI-LYDIRQKK------WRVFGDITQEQKIQSKG---LLWL--GKIIVVCNYIDS-----SNTYELLFYPRY 539 (1134)
Q Consensus 477 LAsgg~dG~i-lwd~~sg~------Wk~F~~~~~e~~~~v~g---l~W~--~~~lv~~~~~~~-----~~~~eLrly~~~ 539 (1134)
++..+..|.+ +.|..++. |........+......+ +... ++.+.+.+.... ....+|.+++..
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 8888889988 99986553 33221111111111111 3333 445544433211 135688888774
Q ss_pred CCCCcceeEEEecCCcc--EEEEecCC-EEEEEE-cCCeEEEEEEE
Q 001165 540 HLDQSSLLCRKSLLAKP--IVMDVYED-YILVTY-RPFDVHIFHVK 581 (1134)
Q Consensus 540 ~ld~~~~~~~~~l~~~~--~~l~~~~d-~llv~~-~d~~i~l~~~~ 581 (1134)
...++.+.+++..| +.+++.+. .+.+.. .++.+.+++..
T Consensus 359 ---T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 359 ---TGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp ---TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred ---CCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 22455555554434 45566777 566665 47889888753
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.00 E-value=2.9e-06 Score=97.97 Aligned_cols=178 Identities=13% Similarity=0.022 Sum_probs=94.6
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
++..+++|+.||.|..||.. +|+.+.++.. +++.+..+.++|..+++++.||.+..||.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~---------------tG~~~W~~~~------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR---------------TGSIKWTLKE------DPVLQVPTHVEEPAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT---------------TCCEEEEEEC------CCSCCCC-----CCEEECTTTCCEEEC--
T ss_pred eCCEEEEEcCCCEEEEEECC---------------CCCEEEEecC------CCceecceEcCCCEEEEeCCCCEEEEEEC
Confidence 56789999999999999998 7887776542 44555556678988888889999999999
Q ss_pred CCCeeEEEeccCCCCce-eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec-CCEEEeeecC
Q 001165 347 SGCRLMSTIRQISLSSI-SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVS 421 (1134)
Q Consensus 347 ~~~~l~~tl~~h~~~~V-~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~-~k~l~S~s~d 421 (1134)
.+++....+..+....+ .++.+..+ ..+..|+ .+..||+.++++.-....+. ...+++ +..++.++.|
T Consensus 67 ~tG~~~w~~~~~~~~~~~~sp~~~~~-----~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 67 KNNEGLTKLPFTIPELVQASPCRSSD-----GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp ---CCSEECSCCHHHHHTTCSCC----------CCCCEEEEEEEEECCC------------------------EEEEEEE
T ss_pred CCCceeeeeeccCccccccCceEecC-----CEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecC
Confidence 87766555543211111 11111112 2333333 78999999887655443322 123344 6677788888
Q ss_pred CcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCC---CEEEEEeCCCeE-EEEccCCc
Q 001165 422 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQKK 494 (1134)
Q Consensus 422 ~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG---~~LAsgg~dG~i-lwd~~sg~ 494 (1134)
+.++.||..+++. .|..- +... ...++++++ ..+++++.+|.+ .||..+|+
T Consensus 140 g~v~a~d~~tG~~-------------~W~~~-----~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 140 YTITMYDTKTREL-------------RWNAT-----YFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEEECCCSSSSSC-------------CCEEE-----EEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CEEEEEECCCCCE-------------EEeEe-----cccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 8999998776654 23211 0011 122334432 556778899999 99998875
No 227
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=0.098 Score=66.02 Aligned_cols=393 Identities=9% Similarity=0.029 Sum_probs=191.5
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecCh---hhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~---~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
+...++|.+.+...++.|..++...... ..+.... .++ ....+.++...++|+..+ +|.+ -|.+|+......
T Consensus 168 i~~d~~g~lwigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~ 242 (781)
T 3v9f_A 168 ATEAEDGKLYIGHVEGGLSILSLNDKSV--KHFVHDPQNPNSL-PGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETF 242 (781)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEE--EEECC---------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEE
T ss_pred EEECCCCCEEEEecCCCeEEEcCCCCce--EeeecCCCCcccC-CCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcE
Confidence 4456678877654455899998753322 1121111 111 124567788888886554 5665 477777643211
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCC-CeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~-~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
..+...... + .......|.++..|. +.+.+|+..+-+..++-+......+.. ....
T Consensus 243 ~~~~~~~~~-----------~-----~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~-------~~f~ 299 (781)
T 3v9f_A 243 TNFHNNPGN-----------I-----HGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQ-------IRFE 299 (781)
T ss_dssp EC---------------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC----------------CE
T ss_pred EEEEcCCCc-----------c-----ccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeec-------cccc
Confidence 101000000 0 000123467777654 578888874556655433221111100 0000
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceec---ccccCCCC
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---IDKELGSG 257 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~---~~~~~~~~ 257 (1134)
.+... . ....-....|.++..++++++- +++.++-+..++............. ...-....
T Consensus 300 ~~~~~--~-------------~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (781)
T 3v9f_A 300 FIREG--D-------------NNYSLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK 363 (781)
T ss_dssp EECBC--S-------------STTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred cccCC--C-------------CCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence 00000 0 0001124568899888888754 3444555666654422211100000 00001235
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
.+.+++..++|.+. +|+.++-+..|+... ++.. .+..........|.++...++|+..+ |..
T Consensus 364 ~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~---------------~~~~-~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~ 425 (781)
T 3v9f_A 364 VVSSVCDDGQGKLW-IGTDGGGINVFENGK---------------RVAI-YNKENRELLSNSVLCSLKDSEGNLWF-GTY 425 (781)
T ss_dssp CEEEEEECTTSCEE-EEEBSSCEEEEETTE---------------EEEE-CC-----CCCSBEEEEEECTTSCEEE-EET
T ss_pred ceEEEEEcCCCCEE-EEeCCCcEEEEECCC---------------CeEE-EccCCCCCCCcceEEEEECCCCCEEE-Eec
Confidence 68899988888755 566666688888761 1110 00000011346799999999988666 666
Q ss_pred CCcEEEEecCCCeeEEEec--cCCCCceeeeEEcCCCCCCcceEEEc-ceeEEEeCCCceEEEEecCC-----CccEEEE
Q 001165 338 SRGLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGS-----SERVLIF 409 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~--~h~~~~V~sv~~sp~~~~~~~~l~sg-s~i~~W~~~~~~l~~~~~~h-----~~~v~~~ 409 (1134)
++++..++..+++.. .+. ......|.++...+++ ..+++. ..+..++..+++........ ...|..+
T Consensus 426 ~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 426 LGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK----KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp TEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS----EEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred cCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC----CEEEEECCceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 678999998776533 332 1123468888777776 555532 25667777665543322111 1223222
Q ss_pred ecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EE
Q 001165 410 SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 488 (1134)
Q Consensus 410 s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lw 488 (1134)
. .|..-++|--.. ...++.+..... .+.+...+.. -.+..|.++..+++|+..+ |+.+|.+ .|
T Consensus 501 ~---------~d~~g~lWigt~-~~Gl~~~~~~~~---~~~~~~~~~~--l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~ 564 (781)
T 3v9f_A 501 A---------QDSEGRFWIGTF-GGGVGIYTPDMQ---LVRKFNQYEG--FCSNTINQIYRSSKGQMWL-ATGEGLVCFP 564 (781)
T ss_dssp E---------ECTTCCEEEEES-SSCEEEECTTCC---EEEEECTTTT--CSCSCEEEEEECTTSCEEE-EETTEEEEES
T ss_pred E---------EcCCCCEEEEEc-CCCEEEEeCCCC---eEEEccCCCC--CCCCeeEEEEECCCCCEEE-EECCCceEEE
Confidence 1 122222332111 111221111000 0111100110 1234689999999998654 5569995 99
Q ss_pred EccCCcEEEeCC
Q 001165 489 DIRQKKWRVFGD 500 (1134)
Q Consensus 489 d~~sg~Wk~F~~ 500 (1134)
|..+++++.|..
T Consensus 565 d~~~~~~~~~~~ 576 (781)
T 3v9f_A 565 SARNFDYQVFQR 576 (781)
T ss_dssp CTTTCCCEEECG
T ss_pred CCCCCcEEEccc
Confidence 999988887753
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.97 E-value=0.00071 Score=78.56 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=65.7
Q ss_pred ccEEEEEE--cCCCCeEEEEEc------CCeEEEEEeccCCcccccee--cccccCC------------CCCeEEEEECC
Q 001165 209 SAIIWLEL--CLPMRLLFVLYS------NGQLMSCSVSKKGLKLAEFI--KIDKELG------------SGDAVCASIAP 266 (1134)
Q Consensus 209 ~~V~~i~f--sp~~~~la~~~s------DG~v~l~~~~~~~~~~~~~~--~~~~~~~------------~~~~~~va~sp 266 (1134)
.....|.| +|+++...++.. ++++.+|..+.......+.+ ....... ...+..+.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 33445555 999988877774 56777766543211111111 1000000 13467899999
Q ss_pred CCCEEEEeee-CCeEEEEeccccccce--eeeeeeccCcceEEEEeecccCCC------CcCeEEEEECCCCCEEEEEE
Q 001165 267 EQQILAVGTR-RGVVELYDLAESASLI--RTVSLYDWGMREVYYTFCRYSMDD------TGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 267 dg~llAsG~~-dg~V~lwd~~~~~~~~--~~l~l~~~~~~~~l~~l~~~~~~h------~g~V~~l~fSPDG~~Lasg~ 336 (1134)
||++|-++.. .+.|.+||+.+..... ..+.. . |.. ....| .+.-..+++||||++|.++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t--G--G~~------~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL--G--GIF------HRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--B--TTT------TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe--C--Cee------ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998766654 7899999997443211 11110 0 000 00001 12347899999999999987
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.89 E-value=0.011 Score=67.22 Aligned_cols=251 Identities=10% Similarity=0.007 Sum_probs=134.6
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
++..+.+++.+|.|..+|.+ +|+.+.+..........++ . ++..+.++..++.+..+|.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~---------------tG~~~W~~~~~~~~~~~p~----~--~~~~v~v~~~~g~l~~~d~ 160 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTS---------------DGTVAWQTKVAGEALSRPV----V--SDGLVLIHTSNGQLQALNE 160 (376)
T ss_dssp ETTEEEEEETTSEEEEEETT---------------TCCEEEEEECSSCCCSCCE----E--ETTEEEEECTTSEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECC---------------CCCEEEEEeCCCceEcCCE----E--ECCEEEEEcCCCeEEEEEC
Confidence 45567778889999999998 6666655432000011121 1 2447777888999999999
Q ss_pred CCCeeEEEeccCCCC----ceeeeEEcCCCCCCcceEEEc--ceeEEEeCCCceEEEEec-CCCc------cE--EEEec
Q 001165 347 SGCRLMSTIRQISLS----SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSSE------RV--LIFSF 411 (1134)
Q Consensus 347 ~~~~l~~tl~~h~~~----~V~sv~~sp~~~~~~~~l~sg--s~i~~W~~~~~~l~~~~~-~h~~------~v--~~~s~ 411 (1134)
.+++........... ....+... ++ ..++.. ..+..+|+.+++..-... +... ++ ....+
T Consensus 161 ~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~----~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 161 ADGAVKWTVNLDMPSLSLRGESAPTTA-FG----AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp TTCCEEEEEECCC-----CCCCCCEEE-TT----EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred CCCcEEEEEeCCCCceeecCCCCcEEE-CC----EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 888776665432110 01222222 22 333322 168888887666543322 1100 00 00011
Q ss_pred ---CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-E
Q 001165 412 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 487 (1134)
Q Consensus 412 ---~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-l 487 (1134)
+..+..++.++.+..+|..+++. .|... .......+. ++..+.+++.+|.+ .
T Consensus 236 ~~~~~~v~~~~~~g~l~~~d~~tG~~-------------~w~~~---------~~~~~~~~~--~~~~l~~~~~~g~l~~ 291 (376)
T 3q7m_A 236 VVVNGVVFALAYNGNLTALDLRSGQI-------------MWKRE---------LGSVNDFIV--DGNRIYLVDQNDRVMA 291 (376)
T ss_dssp EEETTEEEEECTTSCEEEEETTTCCE-------------EEEEC---------CCCEEEEEE--ETTEEEEEETTCCEEE
T ss_pred EEECCEEEEEecCcEEEEEECCCCcE-------------Eeecc---------CCCCCCceE--ECCEEEEEcCCCeEEE
Confidence 34455556667777766544432 23211 111223333 46778888888888 9
Q ss_pred EEccCCc--EEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecCCccEE--EEecC
Q 001165 488 YDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV--MDVYE 563 (1134)
Q Consensus 488 wd~~sg~--Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~~~~~--l~~~~ 563 (1134)
+|..+|+ |+.-.. ... ......-.++.++++ +.+..|.+++.. +..++++..++...+. ....+
T Consensus 292 ~d~~tG~~~w~~~~~--~~~--~~~~~~~~~~~l~v~-----~~~g~l~~~d~~---tG~~~~~~~~~~~~~~~~~~~~~ 359 (376)
T 3q7m_A 292 LTIDGGVTLWTQSDL--LHR--LLTSPVLYNGNLVVG-----DSEGYLHWINVE---DGRFVAQQKVDSSGFQTEPVAAD 359 (376)
T ss_dssp EETTTCCEEEEECTT--TTS--CCCCCEEETTEEEEE-----CTTSEEEEEETT---TCCEEEEEECCTTCBCSCCEEET
T ss_pred EECCCCcEEEeeccc--CCC--cccCCEEECCEEEEE-----eCCCeEEEEECC---CCcEEEEEecCCCcceeCCEEEC
Confidence 9998885 554211 011 111122245666665 334568888763 3456777766322211 12346
Q ss_pred CEEEEEEcCCeEEEEE
Q 001165 564 DYILVTYRPFDVHIFH 579 (1134)
Q Consensus 564 d~llv~~~d~~i~l~~ 579 (1134)
+.+.+.+.++.+..|+
T Consensus 360 ~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 360 GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TEEEEEBTTSCEEEEE
T ss_pred CEEEEEeCCCEEEEEe
Confidence 7888888888887774
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.89 E-value=0.0099 Score=64.31 Aligned_cols=219 Identities=8% Similarity=-0.055 Sum_probs=122.6
Q ss_pred eeEEEEcCCceEEEEEe-CCCEEEEEEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEE
Q 001165 70 NLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (1134)
Q Consensus 70 ~~~v~wSPDg~~Lav~t-~dg~l~lw~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~ 148 (1134)
...++|.|++..|.++. .++.|..++++......... .+ +. ...-.++.++++.++++
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----------------~~---~~--~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----------------QD---LG--SPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----------------TT---CC--CEEEEEEETTTTEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----------------CC---CC--CccEEEEEecCCeEEEE
Confidence 46899999876666554 56788888875431111100 00 00 00112344456677776
Q ss_pred ec-CCcEEEEecCCccccceeccccCCCccccccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEE
Q 001165 149 LS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (1134)
Q Consensus 149 t~-dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~ 227 (1134)
.. ++.|.++..++...... ..........++++|+++.+.++.
T Consensus 97 d~~~~~I~~~~~~g~~~~~~------------------------------------~~~~~~~P~~i~vd~~~g~lyv~~ 140 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQRRVL------------------------------------FDTGLVNPRGIVTDPVRGNLYWTD 140 (267)
T ss_dssp ETTTTEEEEEETTSCSCEEE------------------------------------ECSSCSSEEEEEEETTTTEEEEEE
T ss_pred ECCCCEEEEEEcCCCCEEEE------------------------------------EECCCCCccEEEEeeCCCEEEEEE
Confidence 54 45777776665321111 000112357889999776666665
Q ss_pred c---CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCE-EEEeeeCCeEEEEeccccccceeeeeeeccCcc
Q 001165 228 S---NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGMR 303 (1134)
Q Consensus 228 s---DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~l-lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~ 303 (1134)
. .++++.++.++.... .+.. ........++++|+++. .++-..++.|.+++.+. .
T Consensus 141 ~~~~~~~I~~~~~dg~~~~---~~~~---~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g---------------~ 199 (267)
T 1npe_A 141 WNRDNPKIETSHMDGTNRR---ILAQ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---------------P 199 (267)
T ss_dssp CCSSSCEEEEEETTSCCCE---EEEC---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE---------------E
T ss_pred CCCCCcEEEEEecCCCCcE---EEEE---CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC---------------C
Confidence 4 367776665432211 1110 12245778999997654 45555678999999872 1
Q ss_pred eEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCC
Q 001165 304 EVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 372 (1134)
Q Consensus 304 ~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~ 372 (1134)
.....+.+ ......++.. +|...++.+.++.|.++|..+++.+.++..........+++.|++
T Consensus 200 ~~~~~~~~-----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 200 GRRKVLEG-----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEEEEC-----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred ceEEEecC-----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 11111111 1122455543 344444445668999999998888888864322346778888876
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.86 E-value=0.0013 Score=76.29 Aligned_cols=215 Identities=13% Similarity=0.045 Sum_probs=119.4
Q ss_pred CeEEEEEC--CCCCEE-EEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeec--c--cCCCCcCeEEEEECCCCC
Q 001165 258 DAVCASIA--PEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCR--Y--SMDDTGPVSCIAWTPDNS 330 (1134)
Q Consensus 258 ~~~~va~s--pdg~ll-AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~--~--~~~h~g~V~~l~fSPDG~ 330 (1134)
.+.|.+++ ++++.+ +.|..+++|.++|+...-.. .+..+++.. . .. -...-..+..+|||
T Consensus 83 s~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~-----------p~~~k~ie~~~~~~~~-g~s~Ph~~~~~pdG- 149 (462)
T 2ece_A 83 SALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE-----------PKIIKVIEPEEVKKVS-GYSRLHTVHCGPDA- 149 (462)
T ss_dssp GGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS-----------CEEEEEECHHHHHHHH-CEEEEEEEEECSSC-
T ss_pred hhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCC-----------ceeeeeechhhccccc-CCCcccceeECCCe-
Confidence 33344567 777754 55667899999998632111 122223210 0 00 01123567889999
Q ss_pred EEEEEECC------CcEEEEecCCCeeEEEeccCCCC--ceeeeEEcCCCCCCcceEEEc--------------------
Q 001165 331 AFAVGWKS------RGLTVWSVSGCRLMSTIRQISLS--SISSPIVKPNQDCKYEPLMSG-------------------- 382 (1134)
Q Consensus 331 ~Lasg~~D------g~I~vWdv~~~~l~~tl~~h~~~--~V~sv~~sp~~~~~~~~l~sg-------------------- 382 (1134)
.++++..+ |++.+.|..+.+.+.++...... --..+.++|++ +.+.+.
T Consensus 150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEccCcCccccccccchhhhhhc
Confidence 66666555 78999999999988888632111 12346678887 555443
Q ss_pred --ceeEEEeCCCceEEEEecCC-C--ccE-EEE--ec-CCEEEeee------cCCcEEeeeeeeCCCeEEEeecCCCcc-
Q 001165 383 --TSMMQWDEYGYRLYAIEEGS-S--ERV-LIF--SF-GKCCLNRG------VSGMTYARQVIYGEDRLLVVQSEDTDE- 446 (1134)
Q Consensus 383 --s~i~~W~~~~~~l~~~~~~h-~--~~v-~~~--s~-~k~l~S~s------~d~ti~~w~l~~~~~~l~l~~g~~~~~- 446 (1134)
.++.+|+..++++.....-. . ... +.| ++ ++.+..++ .++++.+|.... ......+--+.+.
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~ 303 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAE 303 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCc
Confidence 38999999988887765432 1 111 344 66 66665555 344565554432 1110000000000
Q ss_pred -ccccccccceeeccCCCceEEEEEcCCCCEEEEEeC-CCeE-EEEcc
Q 001165 447 -LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR 491 (1134)
Q Consensus 447 -~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~-dG~i-lwd~~ 491 (1134)
..+....++..+.+.......+.+||||++|.++.+ .+.| +||+.
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 000000011111111123568899999999999987 6677 99985
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.79 E-value=0.0012 Score=73.34 Aligned_cols=210 Identities=10% Similarity=0.113 Sum_probs=115.1
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeec
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~ 299 (1134)
.+.+.+++.+|.++.++..+..... .. .....+.++.+.+++. +.+|+.++.|..||.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~---~~----~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~------------- 165 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWR---FK----TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD------------- 165 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEE---EE----CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-------------
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEE---Ec----CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-------------
Confidence 4456666778888777654111111 00 1112234556777777 5557778999999876
Q ss_pred cCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceE
Q 001165 300 WGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 379 (1134)
Q Consensus 300 ~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l 379 (1134)
++....+.. ....+.++...++|...+.. +++..+| .++......... ...+.++...+++ ..+
T Consensus 166 ---g~~~~~~~~----~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g----~l~ 229 (330)
T 3hxj_A 166 ---GTEKWRFKT----NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDG----TIY 229 (330)
T ss_dssp ---SCEEEEEEC----SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTS----CEE
T ss_pred ---CCEeEEEec----CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC-CcceeceEECCCC----eEE
Confidence 112222211 33456677788888866554 8999999 555555554433 3457788887776 555
Q ss_pred EEc--ceeEEEeCCCceEEEEecCCCccE--EEEecCCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccc
Q 001165 380 MSG--TSMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 455 (1134)
Q Consensus 380 ~sg--s~i~~W~~~~~~l~~~~~~h~~~v--~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~ 455 (1134)
++. ..+..++..+..++...... ..+ ..+.....+..++.++.+..++. .++. .|.
T Consensus 230 v~t~~~gl~~~~~~g~~~~~~~~~~-~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~-------------~~~----- 289 (330)
T 3hxj_A 230 VTSLDGHLYAINPDGTEKWRFKTGK-RIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE-------------KWN----- 289 (330)
T ss_dssp EEETTTEEEEECTTSCEEEEEECSS-CCCSCCEECTTSCEEEECTTCEEEEECT-TSCE-------------EEE-----
T ss_pred EEcCCCeEEEECCCCCEeEEeeCCC-CccccceEcCCCeEEEecCCCCEEEECC-CCcE-------------EEE-----
Confidence 542 36667777666655443221 111 22222223334444544554442 2111 121
Q ss_pred eeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEE
Q 001165 456 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 489 (1134)
Q Consensus 456 ~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd 489 (1134)
+......+.++.++++|+ |.+|+.+|.+ +..
T Consensus 290 --~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 290 --FETGSWIIATPVIDENGT-IYFGTRNGKFYALF 321 (330)
T ss_dssp --EECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred --EEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence 111233466777888887 4568999988 444
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.77 E-value=0.0015 Score=81.55 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=55.5
Q ss_pred EEEECCCCCEEEEeeeCCe-------------------EEEEeccccccceeeeeeeccCcceEEEEeecccC-----CC
Q 001165 261 CASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSM-----DD 316 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~-------------------V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~-----~h 316 (1134)
.++++|+..++.+++.++. |..+|.+ +|+.+..+..... ..
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~---------------TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD---------------TGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT---------------TCCEEEEEESSTTCCSCCCC
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc---------------CCceeEeeecCCcccccccC
Confidence 5789999999999988874 8888887 7777766542100 01
Q ss_pred CcCeEEEEECCCCC---EEEEEECCCcEEEEecCCCeeEEE
Q 001165 317 TGPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSGCRLMST 354 (1134)
Q Consensus 317 ~g~V~~l~fSPDG~---~Lasg~~Dg~I~vWdv~~~~l~~t 354 (1134)
..++.......+|+ .++.++.+|.+.++|..+++++..
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 12333333334776 899999999999999998887643
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.70 E-value=0.0047 Score=77.03 Aligned_cols=259 Identities=15% Similarity=0.139 Sum_probs=142.4
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC---CCCEEEEEE-----CC
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP---DNSAFAVGW-----KS 338 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~~Lasg~-----~D 338 (1134)
.+..|.+++.||.|..+|.+ +|+.+...... . +......+..+| +|..++..+ .+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~---------------TG~~~W~~~~~-~-~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~ 182 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAK---------------TGQRAWSVDTR-A-DHKRSYTITGAPRVVNGKVVIGNGGAEFGVR 182 (689)
T ss_dssp ETTEEEEECTTSEEEEEETT---------------TCCEEEEEECC-S-CTTSCCBCCSCCEEETTEEEECCBCTTTCCB
T ss_pred ECCEEEEEccCCEEEEEECC---------------CCCEeeeecCc-C-CCCCCccccCCcEEECCEEEEEeCCCccCCC
Confidence 35678888899999999998 67776665431 0 111111112223 565554433 36
Q ss_pred CcEEEEecCCCeeEEEeccC-CC-----------------------------CceeeeEEcCCCCCCcceEEEcc-----
Q 001165 339 RGLTVWSVSGCRLMSTIRQI-SL-----------------------------SSISSPIVKPNQDCKYEPLMSGT----- 383 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~~h-~~-----------------------------~~V~sv~~sp~~~~~~~~l~sgs----- 383 (1134)
|.|..||..+++++-++... +. .....++++|+. ..+..+.
T Consensus 183 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~----~~vy~~~~~g~~ 258 (689)
T 1yiq_A 183 GYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL----NLLYIGVGNGSL 258 (689)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT----TEEEEECCCEES
T ss_pred CEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC----CEEEEeCCCCCc
Confidence 89999999988877665320 00 011245666654 3333222
Q ss_pred -----------------eeEEEeCCCceEEEEecC--CC-------ccEE--EEec-CC---EEEeeecCCcEEeeeeee
Q 001165 384 -----------------SMMQWDEYGYRLYAIEEG--SS-------ERVL--IFSF-GK---CCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 384 -----------------~i~~W~~~~~~l~~~~~~--h~-------~~v~--~~s~-~k---~l~S~s~d~ti~~w~l~~ 431 (1134)
++..||+.+++..-..+. |+ ...+ .+.. ++ .++.++.+|.++++|..+
T Consensus 259 w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 338 (689)
T 1yiq_A 259 WDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT 338 (689)
T ss_dssp SCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred cccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC
Confidence 388999988876544332 21 1222 2222 43 677888899999998766
Q ss_pred CCCeEEEeecCCCcccccc-------------------------ccccceeeccCCCceEEEEEcCCCCEEEEEeC----
Q 001165 432 GEDRLLVVQSEDTDELKIL-------------------------HLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---- 482 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~-------------------------~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~---- 482 (1134)
|+..-. ..-.. ..|. .+..|...-+++|. .++++|+...+.++..
T Consensus 339 G~~l~~-~~~~~---~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~--~~a~dp~~~~~yv~~~~~~~ 412 (689)
T 1yiq_A 339 GELLSA-KGIVP---QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ--PMSYNPDTGLVYIPAHIMSA 412 (689)
T ss_dssp CCEEEE-EESSC---CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS--CCEEETTTTEEEEEEEECCE
T ss_pred CCEecc-ccccc---cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC--cceECCCCCEEEEeccccce
Confidence 553110 00000 0111 11233333455664 5799999888887633
Q ss_pred -----------------------------------------CCeE-EEEccCCc--EEEeCCccceeeeEEEE-EEeeCC
Q 001165 483 -----------------------------------------HGLI-LYDIRQKK--WRVFGDITQEQKIQSKG-LLWLGK 517 (1134)
Q Consensus 483 -----------------------------------------dG~i-lwd~~sg~--Wk~F~~~~~e~~~~v~g-l~W~~~ 517 (1134)
+|.+ .||+.+|+ |+.-.. .. ...+ +.=-++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~--~~~g~~~tagg 487 (689)
T 1yiq_A 413 YYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV---TI--FNGGTLSTAGN 487 (689)
T ss_dssp EEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---SS--CCCCEEEETTT
T ss_pred eeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---CC--ccCccceECCC
Confidence 3667 88988875 553110 00 0111 111244
Q ss_pred EEEEEEEecCCCeeEEEEEeCCCCCCcceeEEEecC----CccEEEEecCCE
Q 001165 518 IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL----AKPIVMDVYEDY 565 (1134)
Q Consensus 518 ~lv~~~~~~~~~~~eLrly~~~~ld~~~~~~~~~l~----~~~~~l~~~~d~ 565 (1134)
.+.++ +.+..|+.|+. .+...+|+.+++ +.|+.+...+..
T Consensus 488 lvf~g-----t~dg~l~a~D~---~tG~~lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 488 LVFEG-----SADGRVIAYAA---DTGEKLWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEE-----CTTSEEEEEET---TTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EEEEE-----CCCCcEEEEEC---CCCccceeeeCCCCcccCceEEEECCEE
Confidence 44444 34567889977 355788888777 445555544443
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.65 E-value=0.0012 Score=79.36 Aligned_cols=242 Identities=14% Similarity=0.032 Sum_probs=140.8
Q ss_pred cCCCCeEEEEEc-CCeEEEEEeccCCccccceecccccCCCCCeEEEEE-C-CCCCEEEEee------------------
Q 001165 217 CLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASI-A-PEQQILAVGT------------------ 275 (1134)
Q Consensus 217 sp~~~~la~~~s-DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~-s-pdg~llAsG~------------------ 275 (1134)
.+||+.+.+... ++++.+++.........-.+ ........+++ + |+++++.+++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 447777777654 45688877765432211111 12355678887 5 9999887774
Q ss_pred eCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC----------------
Q 001165 276 RRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR---------------- 339 (1134)
Q Consensus 276 ~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg---------------- 339 (1134)
.++.+.+.|.+ +.+...++.- .+.-..++.||||+++++.+.+.
T Consensus 173 ~~~~vtvID~~---------------t~~v~~qI~V-----gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 173 YVNVFTAVDAD---------------KWEVAWQVLV-----SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp EEEEEEEEETT---------------TTEEEEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cCceEEEEECC---------------CCeEEEEEEe-----CCCccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 34567777777 6666666542 12235578999999999988653
Q ss_pred ----------------------cEEEEecCC--Cee-EEEeccCCCCceeeeEEcCCCCCCcceEE-Ecc---eeEEEeC
Q 001165 340 ----------------------GLTVWSVSG--CRL-MSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDE 390 (1134)
Q Consensus 340 ----------------------~I~vWdv~~--~~l-~~tl~~h~~~~V~sv~~sp~~~~~~~~l~-sgs---~i~~W~~ 390 (1134)
+|.|-|..+ +.. +.++... ....++.++||+ +.+. ++. ++.++|.
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDG----k~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDK----KHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTS----SEEEEECTTSSBEEEEEG
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCC----CEEEEeCCCCCeEEEEEC
Confidence 577888776 434 4555431 245678899999 6544 332 8888898
Q ss_pred CCce------------EEEEecCCCccE-EEEec-CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCcccccccc-ccc
Q 001165 391 YGYR------------LYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLP 455 (1134)
Q Consensus 391 ~~~~------------l~~~~~~h~~~v-~~~s~-~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~-~~~ 455 (1134)
.+.+ ......-..+.. ++|++ |...++.-.|+++..|++..... .+.|.. .++.+ +++
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~---~~~g~~----~~~vi~kid 379 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR---AYAGEK----VDPIKDKLD 379 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH---HHHTCS----CCCEEEEEE
T ss_pred cccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh---hhcccc----cceeEEEee
Confidence 7542 233222223344 78888 74445666789999999754210 000000 00000 011
Q ss_pred eeec-cCCCceEEEEEcCCCCEEEEEeC---CCe-----------EEEEccCCcEE
Q 001165 456 VSYI-SQNWPVQHVAASKDGMFLAVAGL---HGL-----------ILYDIRQKKWR 496 (1134)
Q Consensus 456 ~~~~-~h~~~V~~va~SpdG~~LAsgg~---dG~-----------ilwd~~sg~Wk 496 (1134)
..|. +|+..-....++|||++|.++.+ |.+ .++|+.+++-+
T Consensus 380 V~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 380 VHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred cccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 1222 22111112356899999999865 554 47888666533
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.64 E-value=0.0044 Score=77.15 Aligned_cols=167 Identities=9% Similarity=0.071 Sum_probs=98.6
Q ss_pred EEEEcCCCCeEEEEEcCC-------------------eEEEEEeccCCc-cccceecccccC--CCCCeEEEEECCCC--
Q 001165 213 WLELCLPMRLLFVLYSNG-------------------QLMSCSVSKKGL-KLAEFIKIDKEL--GSGDAVCASIAPEQ-- 268 (1134)
Q Consensus 213 ~i~fsp~~~~la~~~sDG-------------------~v~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~~va~spdg-- 268 (1134)
.++|+|+++.+.+++.++ .+..++...... +..+......|. .......+....+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 578888888888887665 355555543321 111110001111 11234445555678
Q ss_pred -CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc-----------------------------cCCCCc
Q 001165 269 -QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY-----------------------------SMDDTG 318 (1134)
Q Consensus 269 -~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~-----------------------------~~~h~g 318 (1134)
+.+++++.+|.+.++|.. +|+.+....-. .++..|
T Consensus 327 ~~~l~~~~~~G~l~~lD~~---------------tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G 391 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRT---------------NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (677)
T ss_dssp EEEEEECCTTSEEEEEETT---------------TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred eeEEEEECCCCEEEEEECC---------------CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence 689999999999999988 34333332200 000011
Q ss_pred Ce--EEEEECCCCCEEEEEECC-------------------------------------------CcEEEEecCCCeeEE
Q 001165 319 PV--SCIAWTPDNSAFAVGWKS-------------------------------------------RGLTVWSVSGCRLMS 353 (1134)
Q Consensus 319 ~V--~~l~fSPDG~~Lasg~~D-------------------------------------------g~I~vWdv~~~~l~~ 353 (1134)
.. ..++|+|++..+.+...+ |.|..||+.+++...
T Consensus 392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W 471 (677)
T 1kb0_A 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW 471 (677)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence 10 257899999888776432 789999999998877
Q ss_pred EeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEec
Q 001165 354 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 400 (1134)
Q Consensus 354 tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~ 400 (1134)
+.+.. .++.+..+..++ ..+..|+ .+++||..+++++....
T Consensus 472 ~~~~~--~~~~~g~~~~~g----~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 472 SVEHV--SPWNGGTLTTAG----NVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEES--SSCCCCEEEETT----TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ecCCC--CCCcCcceEeCC----CEEEEECCCCcEEEEECCCCceeeeee
Confidence 76542 234444455454 4444443 88899998888766553
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.62 E-value=0.01 Score=67.57 Aligned_cols=143 Identities=13% Similarity=0.030 Sum_probs=78.1
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCC---cCeEEEEECC--CCCEEEEEECCCcEE
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT---GPVSCIAWTP--DNSAFAVGWKSRGLT 342 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~---g~V~~l~fSP--DG~~Lasg~~Dg~I~ 342 (1134)
+..+.+|+.+|.+..+|.. +|+.+.+.....+... ..+..+.-+| ++..+..++.++.+.
T Consensus 188 ~~~v~~g~~~g~l~~~d~~---------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLME---------------QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp TTEEEECCTTTEEEEEETT---------------TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred CCEEEEEcCCCEEEEEECC---------------CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 3467778889999999988 4555444321000000 0000011122 356677778889999
Q ss_pred EEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEc--ceeEEEeCCCceEEEEecC-CCccEEEEe-cCCEEEee
Q 001165 343 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG-SSERVLIFS-FGKCCLNR 418 (1134)
Q Consensus 343 vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sg--s~i~~W~~~~~~l~~~~~~-h~~~v~~~s-~~k~l~S~ 418 (1134)
.+|..+++....... .....+... ++ ..++.. ..+..+|..+++..-.... ....+.... .+..+..+
T Consensus 253 ~~d~~tG~~~w~~~~---~~~~~~~~~-~~----~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~ 324 (376)
T 3q7m_A 253 ALDLRSGQIMWKREL---GSVNDFIVD-GN----RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVG 324 (376)
T ss_dssp EEETTTCCEEEEECC---CCEEEEEEE-TT----EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEE
T ss_pred EEECCCCcEEeeccC---CCCCCceEE-CC----EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEE
Confidence 999988876655542 223344433 22 333322 2788899887776444331 111111111 15566777
Q ss_pred ecCCcEEeeeeeeCC
Q 001165 419 GVSGMTYARQVIYGE 433 (1134)
Q Consensus 419 s~d~ti~~w~l~~~~ 433 (1134)
+.++.+..+|..+++
T Consensus 325 ~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 325 DSEGYLHWINVEDGR 339 (376)
T ss_dssp CTTSEEEEEETTTCC
T ss_pred eCCCeEEEEECCCCc
Confidence 778888888765544
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.58 E-value=0.0058 Score=76.05 Aligned_cols=263 Identities=13% Similarity=0.094 Sum_probs=144.7
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecc-cCCCCcCeEEEEECCCCCEEEEEEC------CC
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRY-SMDDTGPVSCIAWTPDNSAFAVGWK------SR 339 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~-~~~h~g~V~~l~fSPDG~~Lasg~~------Dg 339 (1134)
.+..|.+++.|+.+..+|.. +|+.+.++... .......+.+--.-.+|. +++++. +|
T Consensus 127 ~~~~v~v~~~dg~l~alD~~---------------tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~-v~v~~~~~~~~~~g 190 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAA---------------TGKEVWHQNTFEGQKGSLTITGAPRVFKGK-VIIGNGGAEYGVRG 190 (677)
T ss_dssp ETTEEEEECTTSEEEEEETT---------------TCCEEEEEETTTTCCSSCBCCSCCEEETTE-EEECCBCTTTCCBC
T ss_pred ECCEEEEEcCCCEEEEEECC---------------CCCEEeeecCCcCcCcCcccccCcEEECCE-EEEEecccccCCCC
Confidence 45678888899999999998 77777665531 000001111100001444 444432 68
Q ss_pred cEEEEecCCCeeEEEeccCCCC-------------------------------ceeeeEEcCCCCCCcceEEEcc-----
Q 001165 340 GLTVWSVSGCRLMSTIRQISLS-------------------------------SISSPIVKPNQDCKYEPLMSGT----- 383 (1134)
Q Consensus 340 ~I~vWdv~~~~l~~tl~~h~~~-------------------------------~V~sv~~sp~~~~~~~~l~sgs----- 383 (1134)
.|..+|..+++++.++...... ....++++|++ ..+..+.
T Consensus 191 ~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~----~~vy~~~~~~~~ 266 (677)
T 1kb0_A 191 YITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL----NTMYVGTGNGSP 266 (677)
T ss_dssp EEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT----TEEEEECCCEES
T ss_pred EEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC----CEEEEECCCCcc
Confidence 9999999988887666432111 11245666654 3332211
Q ss_pred -----------------eeEEEeCCCceEEEEec-C-CC--------ccE-EEEec-C---CEEEeeecCCcEEeeeeee
Q 001165 384 -----------------SMMQWDEYGYRLYAIEE-G-SS--------ERV-LIFSF-G---KCCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 384 -----------------~i~~W~~~~~~l~~~~~-~-h~--------~~v-~~~s~-~---k~l~S~s~d~ti~~w~l~~ 431 (1134)
++..+|..++++.-..+ . |+ ..+ ..... | +.++.++.+|.++++|..+
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t 346 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN 346 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence 38889998877654432 1 21 122 22222 4 5677888899999988766
Q ss_pred CCCeEEEeecCCCcccccc---------------------ccccceeeccCCCceEEEEEcCCCCEEEEEeCC-------
Q 001165 432 GEDRLLVVQSEDTDELKIL---------------------HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH------- 483 (1134)
Q Consensus 432 ~~~~l~l~~g~~~~~~~w~---------------------~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~d------- 483 (1134)
++..- -..-.. ..|. ...+|...-+++|. .++++|++..+.++..+
T Consensus 347 G~~l~-~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~--~~a~dp~~~~~yv~~~~~~~~~~~ 420 (677)
T 1kb0_A 347 GKFIS-AKNFVP---VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH--PMSFNPQTGLVYLPAQNVPVNLMD 420 (677)
T ss_dssp CCEEE-EEESSC---CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS--CCEEETTTTEEEEEEEECCCEEEE
T ss_pred CCEec-cccccc---cCcccccCCCCceeeccccCcCCCccEECcCcccccCCC--CceEcCCCCEEEEeChhcceeeec
Confidence 65421 111000 0010 01223333345553 68999999988886532
Q ss_pred ------------------------------------CeE-EEEccCCc--EEEeCCccceeeeEEEE-EEeeCCEEEEEE
Q 001165 484 ------------------------------------GLI-LYDIRQKK--WRVFGDITQEQKIQSKG-LLWLGKIIVVCN 523 (1134)
Q Consensus 484 ------------------------------------G~i-lwd~~sg~--Wk~F~~~~~e~~~~v~g-l~W~~~~lv~~~ 523 (1134)
|.+ .||+.+++ |+.-... . ...+ +.-.++.++++
T Consensus 421 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~-~~~g~~~~~g~~v~~g- 494 (677)
T 1kb0_A 421 DKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS----P-WNGGTLTTAGNVVFQG- 494 (677)
T ss_dssp CTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS----S-CCCCEEEETTTEEEEE-
T ss_pred ccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC----C-CcCcceEeCCCEEEEE-
Confidence 677 89998875 5531100 0 0111 22234445444
Q ss_pred EecCCCeeEEEEEeCCCCCCcceeEEEecCC----ccEEEEecCCEEEE
Q 001165 524 YIDSSNTYELLFYPRYHLDQSSLLCRKSLLA----KPIVMDVYEDYILV 568 (1134)
Q Consensus 524 ~~~~~~~~eLrly~~~~ld~~~~~~~~~l~~----~~~~l~~~~d~llv 568 (1134)
+.+..+++|+.. +...+|+..+++ .|+.+...+...++
T Consensus 495 ----~~dg~l~a~D~~---tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 495 ----TADGRLVAYHAA---TGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp ----CTTSEEEEEETT---TCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ----CCCCcEEEEECC---CCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 345678888763 556788887765 56666666554444
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.57 E-value=0.0026 Score=76.40 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=52.8
Q ss_pred CeEEEEECCCCCEEEE-eeeCCeEEEEeccccccce-eeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 258 DAVCASIAPEQQILAV-GTRRGVVELYDLAESASLI-RTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 258 ~~~~va~spdg~llAs-G~~dg~V~lwd~~~~~~~~-~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
...++.++|||+++.+ +..+.+|.++|+++..... ..+.. ......+.. -......++|+|||+...+.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~----~~~v~~~v~-----vG~gP~h~aF~~dG~aY~t~ 348 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP----RSAVVAEPE-----LGLGPLHTAFDGRGNAYTSL 348 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG----GGGEEECCB-----CCSCEEEEEECTTSEEEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc----ccceEEEcC-----CCCCcceEEECCCCeEEEEE
Confidence 4558999999997555 4568899999998321000 00000 111222211 12346889999999666677
Q ss_pred ECCCcEEEEecCC
Q 001165 336 WKSRGLTVWSVSG 348 (1134)
Q Consensus 336 ~~Dg~I~vWdv~~ 348 (1134)
.-|+.|.+||+..
T Consensus 349 ~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 349 FLDSQVVKWNIED 361 (595)
T ss_dssp TTTTEEEEEEHHH
T ss_pred ecCCcEEEEEhhH
Confidence 8899999999976
No 240
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.56 E-value=0.12 Score=68.00 Aligned_cols=412 Identities=13% Similarity=0.033 Sum_probs=190.7
Q ss_pred CceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCC------ceEEEEEeC-CCEEEE
Q 001165 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD------TKLIAVVTS-SLYLHI 93 (1134)
Q Consensus 21 ~~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD------g~~Lav~t~-dg~l~l 93 (1134)
...|++.+.++.+++.++.+.+.+...+... +....+. +-.+++.++++.|. ++.+|+|+. |++++|
T Consensus 513 ~~~I~~As~n~~~vvva~g~~l~~fel~~~~--L~~~~~~----~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAVGRALYYLQIHPQE--LRQISHT----EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCCEEEECSSEEEEEETTEEEEEEEETTE--EEEEEEE----ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEE
T ss_pred CCEEEEEEeCCCEEEEEECCEEEEEEeeCCc--eeeeccc----CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEE
Confidence 3456555666666666666677777775322 1122111 11357899999864 469999996 999999
Q ss_pred EEEEecCcceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccC
Q 001165 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (1134)
Q Consensus 94 w~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~ 173 (1134)
+++.. ...+....-.. +....++ .+..+ ...-++.+|..||.+..+.+|..+..........
T Consensus 587 ~sL~~-l~~~~~~~L~~-~~~p~si---------------~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~ 648 (1158)
T 3ei3_A 587 LKLPS-FELLHKEMLGG-EIIPRSI---------------LMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT 648 (1158)
T ss_dssp EETTT-CCEEEEEECCS-SCCEEEE---------------EEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred EECCC-CCeEEEEECCC-CCCCcEE---------------EEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence 99953 12221100000 0000111 11111 0124688999999988888875331111000000
Q ss_pred CCccccccccccCCCc---cccccCC-------CcccccccCCCcccE-EEEEEcCC--CCeEEEEEcCCeEEEEEeccC
Q 001165 174 NDSSVAALSHHFPSNG---LASVDTS-------GAFVSDHKFPISSAI-IWLELCLP--MRLLFVLYSNGQLMSCSVSKK 240 (1134)
Q Consensus 174 ~~~~~i~~i~~~~~~~---l~s~~~~-------~~~~~~~~~~~~~~V-~~i~fsp~--~~~la~~~sDG~v~l~~~~~~ 240 (1134)
.+...++..++...++ ++.+..+ +.+...+... ..+ ....|+.. .+.++.++ ++.+.+..++..
T Consensus 649 LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~--~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~ 725 (1158)
T 3ei3_A 649 LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL--KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI 725 (1158)
T ss_dssp CCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSS--SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCS
T ss_pred cCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccCh--HHhceEeccCcccCCCcEEEEc-CCceEEEEeccc
Confidence 1111122222221111 0111000 0000001110 011 12344433 24566554 455888887654
Q ss_pred CccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc--------------------------------c
Q 001165 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE--------------------------------S 288 (1134)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~--------------------------------~ 288 (1134)
.....+.+. . ...+..++++|+.+.+++++.+.. .++.++ .
T Consensus 726 ~~~~~~~ip----L-~~Tprri~y~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1158)
T 3ei3_A 726 QKLHIRTVP----L-YESPRKICYQEVSQCFGVLSSRIE--VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 798 (1158)
T ss_dssp SSEEEEEEE----C-SSEEEEEEEEGGGTEEEEEEEEEE--EECSSSSEEESSCCHHHHCSEEEECCCCCC---------
T ss_pred CCeeEEEEe----C-CCCceEEEEcCCCCEEEEEEEecc--ccccccccchhhhhhhhhhhhhcccccccccccccCchh
Confidence 322222221 1 256778999999988877764321 111100 0
Q ss_pred c-c---ceeeeeeeccCcceEEEEeecccCCCCcCeE---EEEECCC-CCEEEEEE----------CCCcEEEEecCCCe
Q 001165 289 A-S---LIRTVSLYDWGMREVYYTFCRYSMDDTGPVS---CIAWTPD-NSAFAVGW----------KSRGLTVWSVSGCR 350 (1134)
Q Consensus 289 ~-~---~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~---~l~fSPD-G~~Lasg~----------~Dg~I~vWdv~~~~ 350 (1134)
. + ....+.+.+..+.+.+.++.- +....+. .+.|..+ ..+|++|. ..|.|.++++.+++
T Consensus 799 ~~g~~~~~s~i~lidp~t~~~i~~~~l---~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k 875 (1158)
T 3ei3_A 799 SFGEEVEVHNLLIIDQHTFEVLHAHQF---LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK 875 (1158)
T ss_dssp -CCCEEEEEEEEEEETTTCCEEEEEEC---CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE
T ss_pred hcCCceeeEEEEEEeCCCCeEEEEEeC---CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE
Confidence 0 0 001122222112333333221 1122333 3445443 46888885 24779999987655
Q ss_pred eEEEeccCCCCceeeeEEcCCCCCCcceEEE-cceeEEEeCCCceEEEEecCCCccE--EEEec-CCEEEeeecCCcEEe
Q 001165 351 LMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYA 426 (1134)
Q Consensus 351 l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s-gs~i~~W~~~~~~l~~~~~~h~~~v--~~~s~-~k~l~S~s~d~ti~~ 426 (1134)
+....+..-.+.|++++-- +| ..+++ |.++++|+....+.+.....+-..+ ..+.. +..++.|..-..+.+
T Consensus 876 L~lv~~~~v~g~v~al~~~-~g----~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~ 950 (1158)
T 3ei3_A 876 LQTVAEKEVKGAVYSMVEF-NG----KLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLL 950 (1158)
T ss_dssp EEEEEEEEESSCEEEEEEE-TT----EEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEE
T ss_pred EEEEEEEEcCCcCEEEeee-CC----EEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEE
Confidence 4322222114567776643 23 44444 3499999987654333211111111 22322 555555555445554
Q ss_pred eeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeE-EEEccC
Q 001165 427 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 492 (1134)
Q Consensus 427 w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~i-lwd~~s 492 (1134)
......+.++..+..+ -+.-.++++.|=.+ ..++.|..+|.+ +.....
T Consensus 951 ~~y~~~~~~L~~~a~D-----------------~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 951 LAYKPMEGNFEEIARD-----------------FNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEETTTTEEEEEEEC-----------------CSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred EEEEcCCCeEEEEEee-----------------cccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 4333333332221110 12224667777434 367778999988 766544
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.51 E-value=1.4e-05 Score=92.07 Aligned_cols=178 Identities=13% Similarity=0.043 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
+++.+++++.||.++.|+...+.. .|... . ..+.+..+.++++++++++.||.|..||.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-----~W~~~--~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~------------ 67 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-----KWTLK--E-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK------------ 67 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-----EEEEE--C-CCSCCCC-----CCEEECTTTCCEEEC---------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----EEEec--C-CCceecceEcCCCEEEEeCCCCEEEEEECC------------
Confidence 456788888999999988754332 11110 1 233344455678888888999999999997
Q ss_pred ccCcceEEEEeecccCCCCc-CeEE-EEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCc
Q 001165 299 DWGMREVYYTFCRYSMDDTG-PVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 376 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g-~V~~-l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~ 376 (1134)
+|+.+..+.. +.+ .+.+ ...+ ++..+++|+.|+.+..||..+++...++..++ ...++|++
T Consensus 68 ---tG~~~w~~~~----~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~---- 130 (369)
T 2hz6_A 68 ---NNEGLTKLPF----TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPST---- 130 (369)
T ss_dssp -----CCSEECSC----CHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------
T ss_pred ---CCceeeeeec----cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccC----
Confidence 4444333221 211 1100 0111 45567788889999999999888777665542 12345544
Q ss_pred ceEEEcc---eeEEEeCCCceEEEEecCCCccEEEEec----CCEEEeeecCCcEEeeeeeeCC
Q 001165 377 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 433 (1134)
Q Consensus 377 ~~l~sgs---~i~~W~~~~~~l~~~~~~h~~~v~~~s~----~k~l~S~s~d~ti~~w~l~~~~ 433 (1134)
..+..++ .+..||..++++.-....+...-..++. ...+..++.|+.+..||..+++
T Consensus 131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 131 SLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp --EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 4454443 7889999877653222110000011111 1456677888899988876554
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.49 E-value=0.0043 Score=68.87 Aligned_cols=144 Identities=14% Similarity=0.062 Sum_probs=80.3
Q ss_pred EEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceee
Q 001165 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (1134)
Q Consensus 215 ~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~ 294 (1134)
...++++ +.+++.+|.++.++.. ..... ... .....+.++.+.+++.+.+.+ +.+..|| .
T Consensus 143 ~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~--~~~----~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~-------- 202 (330)
T 3hxj_A 143 IVSEDGT-IYVGSNDNYLYAINPD-GTEKW--RFK----TNDAITSAASIGKDGTIYFGS---DKVYAIN-P-------- 202 (330)
T ss_dssp EECTTSC-EEEECTTSEEEEECTT-SCEEE--EEE----CSSCCCSCCEECTTCCEEEES---SSEEEEC-T--------
T ss_pred EEcCCCE-EEEEcCCCEEEEECCC-CCEeE--EEe----cCCCceeeeEEcCCCEEEEEe---CEEEEEC-C--------
Confidence 4455555 4556667888777655 21110 000 112334466777888766544 7788888 4
Q ss_pred eeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCC
Q 001165 295 VSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 374 (1134)
Q Consensus 295 l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~ 374 (1134)
+++....... ....+.++...++|... .+..++++..++..+.. +..+... ...+.++.+.+++
T Consensus 203 -------~g~~~~~~~~----~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~g-- 266 (330)
T 3hxj_A 203 -------DGTEKWNFYA----GYWTVTRPAISEDGTIY-VTSLDGHLYAINPDGTE-KWRFKTG-KRIESSPVIGNTD-- 266 (330)
T ss_dssp -------TSCEEEEECC----SSCCCSCCEECTTSCEE-EEETTTEEEEECTTSCE-EEEEECS-SCCCSCCEECTTS--
T ss_pred -------CCcEEEEEcc----CCcceeceEECCCCeEE-EEcCCCeEEEECCCCCE-eEEeeCC-CCccccceEcCCC--
Confidence 3444433322 34568888889988655 45667889889865544 4444332 2234455555555
Q ss_pred CcceEEEcc--eeEEEeCCCceEE
Q 001165 375 KYEPLMSGT--SMMQWDEYGYRLY 396 (1134)
Q Consensus 375 ~~~~l~sgs--~i~~W~~~~~~l~ 396 (1134)
..+++.. .+..++..+..++
T Consensus 267 --~l~v~t~~ggl~~~d~~g~~~~ 288 (330)
T 3hxj_A 267 --TIYFGSYDGHLYAINPDGTEKW 288 (330)
T ss_dssp --CEEEECTTCEEEEECTTSCEEE
T ss_pred --eEEEecCCCCEEEECCCCcEEE
Confidence 4444332 5677776443333
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.49 E-value=0.042 Score=59.23 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=93.6
Q ss_pred ccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~ 286 (1134)
..+..++++++++.+.++. .++++..++.++.... .+.. .+......++++|++. +.++-..++.|.+++.+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---~~~~---~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---TIIR---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---EEEC---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---EEEE---CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 4567899999877666655 4678888776543221 1111 1225678999999754 55555567899999987
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC---CCcEEEEecCCCeeEEEeccCCCCce
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~---Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
... . ..+.. . .......++++|++..|..+.. .+.|.+++..+.. ...+...+....
T Consensus 110 g~~--~--------------~~~~~--~-~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P 169 (267)
T 1npe_A 110 GTQ--R--------------RVLFD--T-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLP 169 (267)
T ss_dssp SCS--C--------------EEEEC--S-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCE
T ss_pred CCC--E--------------EEEEE--C-CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCC
Confidence 211 0 01100 0 1234588999997665555543 3678888887643 222321113456
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEE
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA 397 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~ 397 (1134)
..++++|++. ....+.. ++..++..+.....
T Consensus 170 ~gia~d~~~~---~lyv~d~~~~~I~~~~~~g~~~~~ 203 (267)
T 1npe_A 170 NGLTFDAFSS---QLCWVDAGTHRAECLNPAQPGRRK 203 (267)
T ss_dssp EEEEEETTTT---EEEEEETTTTEEEEEETTEEEEEE
T ss_pred cEEEEcCCCC---EEEEEECCCCEEEEEecCCCceEE
Confidence 7888888651 2333322 77778877654433
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.41 E-value=0.017 Score=66.11 Aligned_cols=89 Identities=7% Similarity=-0.195 Sum_probs=65.8
Q ss_pred eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE----------CCCcEEEEecCC
Q 001165 279 VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRGLTVWSVSG 348 (1134)
Q Consensus 279 ~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~----------~Dg~I~vWdv~~ 348 (1134)
+|.++|.+ +++.+.++.. -..+ .+.+||||+.+.++. .+++|.+||..+
T Consensus 47 ~vsvID~~---------------t~~v~~~i~v----G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 47 ENWVSCAG---------------CGVTLGHSLG----AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp EEEEEETT---------------TTEEEEEEEE----CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred eEEEEECC---------------CCeEEEEEeC----CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 88899988 7888888764 2345 799999999998886 368899999999
Q ss_pred CeeEEEeccCC------CCceeeeEEcCCCCCCcceEEEc----c-eeEE--EeCCC
Q 001165 349 CRLMSTIRQIS------LSSISSPIVKPNQDCKYEPLMSG----T-SMMQ--WDEYG 392 (1134)
Q Consensus 349 ~~l~~tl~~h~------~~~V~sv~~sp~~~~~~~~l~sg----s-~i~~--W~~~~ 392 (1134)
.+.+.++.-++ ......++++||+ ..+..+ . .+.+ +|+.+
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG----k~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCASS----ACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECTTS----SCEEEEECSSSCEEEEEETTTEE
T ss_pred CCEEEEEECCCccccccCCCcceEEEcCCC----CEEEEEccCCCCeEEEEEEchhh
Confidence 99999885321 1235678999998 444321 2 5666 88766
No 245
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.35 E-value=0.022 Score=70.50 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=47.3
Q ss_pred EEEEECCCCCEEEEeee-CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCc-CeEEEEECCCCCEEEEEE-
Q 001165 260 VCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG-PVSCIAWTPDNSAFAVGW- 336 (1134)
Q Consensus 260 ~~va~spdg~llAsG~~-dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g-~V~~l~fSPDG~~Lasg~- 336 (1134)
.++++.++++++++|+. ++.+.+||.... +-... ... +.. .-.+++..+||+.++.|+
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~---------------~W~~~-~~~---~~~R~~~s~~~~~dg~iyv~GG~ 306 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSD---------------SWIPG-PDM---QVARGYQSSATMSDGRVFTIGGS 306 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGT---------------EEEEC-CCC---SSCCSSCEEEECTTSCEEEECCC
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCC---------------ceeEC-CCC---CccccccceEEecCCeEEEEeCc
Confidence 35778899999999984 568999998722 11100 000 111 113455668999999998
Q ss_pred CC-----CcEEEEecCCCe
Q 001165 337 KS-----RGLTVWSVSGCR 350 (1134)
Q Consensus 337 ~D-----g~I~vWdv~~~~ 350 (1134)
.+ ..+.+||..+..
T Consensus 307 ~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 307 WSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CCSSSCCCCEEEEETTTTE
T ss_pred ccCCcccccceEeCCCCCc
Confidence 44 468999998765
No 246
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.7 Score=58.11 Aligned_cols=392 Identities=16% Similarity=0.126 Sum_probs=187.2
Q ss_pred EEEee--cCeEEEEEcCCeEEEeecCCcceeEEEeecChh-hHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 25 IYFKV--NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 25 v~fS~--dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
+.... +|++.+...++.|..++..... +..+..... .+ ....+.++...++|...+ +|.++-|..|+......
T Consensus 120 i~~d~~~~g~lwi~t~~~gl~~~~~~~~~--~~~~~~~~~~~l-~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~ 195 (781)
T 3v9f_A 120 ITSSVQAGKGLWVCTYYRGIEYLDIATGK--FTHYNKSTVPAL-PSEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSV 195 (781)
T ss_dssp EEECSSTTSEEEEEESSSCEEEEETTTTE--EEEESTTTCTTC-SCCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEE
T ss_pred EEecCccCCCEEEEECCCCeeEEECCCCe--EEeeccCcccCC-CccceEEEEECCCCCEEE-EecCCCeEEEcCCCCce
Confidence 33455 6766654436678888875332 122211000 01 123456777777876654 67665577777543211
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCC-CeEEEEecCCcEEEEecCCccccceeccccCCCccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~-~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~ 180 (1134)
..+. +.. .....+ ....|.++..|. ..+.+++.+| +.++ +.... .+.. .
T Consensus 196 ~~~~--~~~------------~~~~~l--~~~~i~~i~~d~~g~lwigt~~G-l~~~--d~~~~-~~~~---------~- 245 (781)
T 3v9f_A 196 KHFV--HDP------------QNPNSL--PGNDVRCIYKDTNGNIWIGTSKG-LALF--NANTE-TFTN---------F- 245 (781)
T ss_dssp EEEC--C----------------------CCSSEEEEEECTTCCEEEEETTE-EEEE--ETTTT-EEEC-----------
T ss_pred Eeee--cCC------------CCcccC--CCCceeEEEEcCCCCEEEEeCCc-HheE--CCCCC-cEEE---------E-
Confidence 1111 000 000001 112466776664 4588888764 5544 33221 1100 0
Q ss_pred cccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccce-------ec-ccc
Q 001165 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF-------IK-IDK 252 (1134)
Q Consensus 181 ~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~-------~~-~~~ 252 (1134)
.. ... .........|.++...+++++. +++..+-+..++........... .. ...
T Consensus 246 --~~--~~~------------~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 246 --HN--NPG------------NIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp --------------------------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred --Ec--CCC------------ccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 00 000 0001124568888888877644 34443556666654322111000 00 000
Q ss_pred cCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE
Q 001165 253 ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF 332 (1134)
Q Consensus 253 ~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L 332 (1134)
-.....+.++...++|.+- +|+.++-|..|+..... .+.+..... .. . ...-....|.++...++|+..
T Consensus 309 ~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~~~~--~~-----~-~~~l~~~~v~~i~~d~~g~lW 377 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPT--FHTWSYSPT--QM-----N-ESSLSNKVVSSVCDDGQGKLW 377 (781)
T ss_dssp SBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCS--CEEEC------CC-----C-SSCCSSSCEEEEEECTTSCEE
T ss_pred CCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCc--ceeeccCcc--cc-----c-cCCCCCcceEEEEEcCCCCEE
Confidence 1123568899999988754 56767778888866211 111100000 00 0 000123569999999988755
Q ss_pred EEEECCCcEEEEecCCCeeEEEec---cCCCCceeeeEEcCCCCCCcceEEEc--ceeEEEeCCCceEEEEecC--CCcc
Q 001165 333 AVGWKSRGLTVWSVSGCRLMSTIR---QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG--SSER 405 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~~~~l~~tl~---~h~~~~V~sv~~sp~~~~~~~~l~sg--s~i~~W~~~~~~l~~~~~~--h~~~ 405 (1134)
.|..++++..++..++... .+. ......|.++...+++ ..++.. ..+..++..+++....... ....
T Consensus 378 -igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 451 (781)
T 3v9f_A 378 -IGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEG----NLWFGTYLGNISYYNTRLKKFQIIELEKNELLD 451 (781)
T ss_dssp -EEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTS----CEEEEETTEEEEEECSSSCEEEECCSTTTCCCC
T ss_pred -EEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCC----CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCe
Confidence 4566688999998654322 111 1113467888777666 666542 2566777776654333211 1233
Q ss_pred EEEEec--CCEEEeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCC
Q 001165 406 VLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 483 (1134)
Q Consensus 406 v~~~s~--~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~d 483 (1134)
|.++.. ...+..+.. +.+..++...+. +...............|++++.+++|+..+.....
T Consensus 452 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~---------------~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~ 515 (781)
T 3v9f_A 452 VRVFYEDKNKKIWIGTH-AGVFVIDLASKK---------------VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG 515 (781)
T ss_dssp EEEEEECTTSEEEEEET-TEEEEEESSSSS---------------CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred EEEEEECCCCCEEEEEC-CceEEEeCCCCe---------------EEecccCcccccccceeEEEEEcCCCCEEEEEcCC
Confidence 433222 111212222 123333321111 11000000000113569999999999865543347
Q ss_pred CeEEEEccCCcEEEeCC
Q 001165 484 GLILYDIRQKKWRVFGD 500 (1134)
Q Consensus 484 G~ilwd~~sg~Wk~F~~ 500 (1134)
|...||..+++++.|..
T Consensus 516 Gl~~~~~~~~~~~~~~~ 532 (781)
T 3v9f_A 516 GVGIYTPDMQLVRKFNQ 532 (781)
T ss_dssp CEEEECTTCCEEEEECT
T ss_pred CEEEEeCCCCeEEEccC
Confidence 76699999998888754
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.18 E-value=0.032 Score=62.14 Aligned_cols=121 Identities=14% Similarity=0.062 Sum_probs=69.8
Q ss_pred cEEEEEEcC-CCCeEEEEEc-----------------CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE
Q 001165 210 AIIWLELCL-PMRLLFVLYS-----------------NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL 271 (1134)
Q Consensus 210 ~V~~i~fsp-~~~~la~~~s-----------------DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll 271 (1134)
...++++++ +|+..++-.. +|.++.++........ ... .......++++|+++.|
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~----~~~~p~gia~~~dg~~l 199 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL---LLK----ELHVPGGAEVSADSSFV 199 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE---EEE----EESCCCEEEECTTSSEE
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE---ecc----CCccCcceEECCCCCEE
Confidence 356788899 8876555322 2556665543221110 100 11234578999999855
Q ss_pred EEe-eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC----------CCc
Q 001165 272 AVG-TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK----------SRG 340 (1134)
Q Consensus 272 AsG-~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~----------Dg~ 340 (1134)
.++ +.++.|.+|+++..... ..+.... ..+ ...+++.++|++.++.+. .+.
T Consensus 200 yv~d~~~~~I~~~~~~~~~~~----------~~~~~~~-------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~ 261 (322)
T 2fp8_A 200 LVAEFLSHQIVKYWLEGPKKG----------TAEVLVK-------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPK 261 (322)
T ss_dssp EEEEGGGTEEEEEESSSTTTT----------CEEEEEE-------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred EEEeCCCCeEEEEECCCCcCC----------ccceEEe-------CCC-CCCeEECCCCCEEEEecCcccccccCCCccE
Confidence 544 56789999998732100 0111111 123 677999999997777655 466
Q ss_pred EEEEecCCCeeEEEec
Q 001165 341 LTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 341 I~vWdv~~~~l~~tl~ 356 (1134)
|..+|..+ +.+..+.
T Consensus 262 v~~~d~~G-~~~~~~~ 276 (322)
T 2fp8_A 262 GIKFDEFG-NILEVIP 276 (322)
T ss_dssp EEEECTTS-CEEEEEE
T ss_pred EEEECCCC-CEEEEEE
Confidence 88888754 4454443
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.12 E-value=0.051 Score=68.45 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=70.9
Q ss_pred cEEEEEEc-CCCCeEEEEEcC-C----eEEEEEeccC-CccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC----
Q 001165 210 AIIWLELC-LPMRLLFVLYSN-G----QLMSCSVSKK-GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG---- 278 (1134)
Q Consensus 210 ~V~~i~fs-p~~~~la~~~sD-G----~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg---- 278 (1134)
.+....|| |||+.+|.+.+. | +++++++.+. ... ...+. .....++|+|||+.|+....|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~-------~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS-------GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE-------EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc-------CceeeEEEecCCCEEEEEEECCCCCC
Confidence 57788999 999988877653 3 3777777654 311 01110 0123578999999888877652
Q ss_pred -eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECC---CcEEEEecCCC
Q 001165 279 -VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGC 349 (1134)
Q Consensus 279 -~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D---g~I~vWdv~~~ 349 (1134)
.|.++++...... ...+.. . .+......+.|||||++|+..+.+ ..|.++|+.++
T Consensus 247 ~~v~~~~lgt~~~~-----------~~lv~~--~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 247 NKVWRHVMGKLQSE-----------DVCLYE--E---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEETTSCGGG-----------CEEEEE--C---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CEEEEEECCCCchh-----------cEEEEe--c---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 5666666521110 011111 0 123446788999999988866532 35777888764
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.03 E-value=0.11 Score=57.66 Aligned_cols=248 Identities=8% Similarity=-0.026 Sum_probs=121.4
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEee-c----ccCCCCcCeEEEEECC-CCCE
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFC-R----YSMDDTGPVSCIAWTP-DNSA 331 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~-~----~~~~h~g~V~~l~fSP-DG~~ 331 (1134)
...++++.++++++.++..++.|..|+.+... ...+.......+. ..+ + ......+.+..+++.| +|+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~p~gi~~~~~~g~- 93 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNK---AFCENSTDAEKRPLCGRTYDISYNLQNNQ- 93 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCH---HHHTTCCCGGGHHHHCCEEEEEEETTTTE-
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc--eEEEecccccccc---cccccccchhccccCCCCceEEEcCCCCc-
Confidence 34578899999978888889999999876211 1111000000000 000 0 0000113578899998 665
Q ss_pred EEEEECCCcEEEEecCCCeeEEEec----cCCCCceeeeEEcC-CCCCCcceEEEc--------------------ceeE
Q 001165 332 FAVGWKSRGLTVWSVSGCRLMSTIR----QISLSSISSPIVKP-NQDCKYEPLMSG--------------------TSMM 386 (1134)
Q Consensus 332 Lasg~~Dg~I~vWdv~~~~l~~tl~----~h~~~~V~sv~~sp-~~~~~~~~l~sg--------------------s~i~ 386 (1134)
|.++...+++..+|..++.. ..+. +......+.+++.+ ++ ..+++. ..+.
T Consensus 94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G----~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG----IVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC----CEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC----EEEEECCcccccccccceehcccCCCceEE
Confidence 44554456688899876542 2221 11123467888988 77 555531 2466
Q ss_pred EEeCCCceEEEEecC-CCccEEEEec-CCEE-EeeecCCcEEeeeeeeCCCeEEEeecCCCccccccccccceeeccCCC
Q 001165 387 QWDEYGYRLYAIEEG-SSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 463 (1134)
Q Consensus 387 ~W~~~~~~l~~~~~~-h~~~v~~~s~-~k~l-~S~s~d~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~~~~~~~~~~h~~ 463 (1134)
.+++.++++.....+ ....=+++++ ++.+ ++-...+.+..+++...... . ...+.....
T Consensus 169 ~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~------------~------~~~~~~~~g 230 (322)
T 2fp8_A 169 KYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG------------T------AEVLVKIPN 230 (322)
T ss_dssp EEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT------------C------EEEEEECSS
T ss_pred EEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC------------c------cceEEeCCC
Confidence 677766654332211 1111145555 4533 33344455555553311000 0 001111112
Q ss_pred ceEEEEEcCCCCEEEEEeC----------CCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeE
Q 001165 464 PVQHVAASKDGMFLAVAGL----------HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYE 532 (1134)
Q Consensus 464 ~V~~va~SpdG~~LAsgg~----------dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~e 532 (1134)
...++++++|++.++... .+.+ .+|........+.......--.+.++...++.+.++. .....
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~----~~~~~ 305 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT----LFHGS 305 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC----SSCSE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEee----cCCCc
Confidence 567899999986665543 3556 8887654444443321100001223333455555541 23355
Q ss_pred EEEEeCC
Q 001165 533 LLFYPRY 539 (1134)
Q Consensus 533 Lrly~~~ 539 (1134)
|..|+..
T Consensus 306 i~~~~~~ 312 (322)
T 2fp8_A 306 VGILVYD 312 (322)
T ss_dssp EEEEEC-
T ss_pred eEEEecc
Confidence 6666553
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.03 E-value=0.033 Score=60.01 Aligned_cols=111 Identities=12% Similarity=0.019 Sum_probs=73.1
Q ss_pred EEEECCCCCEEEEeeeCC--eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEEC
Q 001165 261 CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWK 337 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg--~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~ 337 (1134)
.+.|+ ++.+..+++.+| .|+++|++ +++.+.++.- . ........+++|. ..+..|.
T Consensus 47 GL~~~-~~~LyestG~~g~S~v~~vD~~---------------Tgkv~~~~~l----~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 47 GFFYR-NGYFYESTGLNGRSSIRKVDIE---------------SGKTLQQIEL----G-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEECTT---------------TCCEEEEEEC----C-TTCCEEEEEEETTEEEEEESS
T ss_pred eEEEE-CCEEEEECCCCCCceEEEEECC---------------CCcEEEEEec----C-CccceeEEEEeCCEEEEEEee
Confidence 67788 678888888877 89999998 7777776543 1 1222222233454 4455677
Q ss_pred CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEE-cc-eeEEEeCCCceEEEEe
Q 001165 338 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s-gs-~i~~W~~~~~~l~~~~ 399 (1134)
++.+.++|..+.+++.++.-.+. ...+.+++. ..++| |+ ++.++|+++.+.....
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~e----G~glt~dg~---~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDGE----GWGLTHNDQ---YLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSSC----CCCEEECSS---CEEECCSSSEEEEECTTTCSEEEEE
T ss_pred CCEEEEEECccCcEEEEEECCCC----ceEEecCCC---EEEEECCCCeEEEEcCCCCeEEEEE
Confidence 89999999999999988875321 123334541 34444 33 7888999988776654
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.02 E-value=0.071 Score=57.86 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=74.6
Q ss_pred eEEEEECCCCCEEEEeee--CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 259 AVCASIAPEQQILAVGTR--RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~--dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
...++|+|++.+.++.+. +++|+++|+. +++.+.++.- ..+. ....+++. +++..++.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~---------------tg~v~~~i~l--~~~~-fgeGi~~~-g~~lyv~t~ 83 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQ---------------TGKVENIHKM--DDSY-FGEGLTLL-NEKLYQVVW 83 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETT---------------TCCEEEEEEC--CTTC-CEEEEEEE-TTEEEEEET
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECC---------------CCCEEEEEec--CCCc-ceEEEEEe-CCEEEEEEe
Confidence 357899999877666543 6899999999 7777766542 0111 12234444 234556667
Q ss_pred CCCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEE-cc-eeEEEeCCCceEEEEe
Q 001165 337 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 337 ~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s-gs-~i~~W~~~~~~l~~~~ 399 (1134)
.++.+.++|..+.+.+.++.-. .. ....+++++. ..+++ |+ ++.++|+++.+.....
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SS--SCCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CC--CeEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEE
Confidence 7899999999999988888532 11 1233555651 33444 33 8888999888766554
No 252
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.88 E-value=0.37 Score=51.84 Aligned_cols=128 Identities=11% Similarity=0.079 Sum_probs=80.0
Q ss_pred cCCCcccEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEE
Q 001165 204 KFPISSAIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (1134)
Q Consensus 204 ~~~~~~~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~l 282 (1134)
+.+-...+..++|+|+++ ++++..++++++.++..+ .. ...+. ..+..+.-.+++.++++++++.-.++.+.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v--~~~i~---l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DL--IRTIP---LDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CE--EEEEE---CSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CE--EEEEe---cCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 444445789999999876 555566777777766652 11 11121 123357778899999987666556788999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
+++...+.. ..+.....+ + ...........|+|+|+++.|.++.+.+...||.+.
T Consensus 96 ~~v~~~~~i-~~~~~~~~~-------~--~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 96 ISLTPNSEV-KILKKIKIP-------L--QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EEECTTCCE-EEEEEEECC-------C--SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred EEcCCCCee-eeeeeeccc-------c--ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 998754421 111100000 0 011244568999999999888888777677777765
No 253
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.81 E-value=0.03 Score=70.52 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred CeEEEEEC-CCCCEEEEeeeC-C----eEEEEeccccccceeeeeeeccCcc-eEEE-EeecccCCCCcCeEEEEECCCC
Q 001165 258 DAVCASIA-PEQQILAVGTRR-G----VVELYDLAESASLIRTVSLYDWGMR-EVYY-TFCRYSMDDTGPVSCIAWTPDN 329 (1134)
Q Consensus 258 ~~~~va~s-pdg~llAsG~~d-g----~V~lwd~~~~~~~~~~l~l~~~~~~-~~l~-~l~~~~~~h~g~V~~l~fSPDG 329 (1134)
.+...+|| |||++||.+... | +|+++|++ ++ +.+. .+ .+....++|||||
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~---------------~g~~~l~~~~-------~~~~~~~~WspDg 232 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS---------------DPSQTIADKV-------SGTNGEIVWGPDH 232 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT---------------CTTCCCCCCE-------EEECSCCEECSST
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC---------------CCCEeCCccc-------cCceeeEEEecCC
Confidence 45678999 999999976543 2 59999988 33 3110 00 1113468899999
Q ss_pred CEEEEEECC-----CcEEEEecCCCee--EEEeccCCCCceeeeEEcCCCCCCcceEEEcc------eeEEEeCCCc
Q 001165 330 SAFAVGWKS-----RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGY 393 (1134)
Q Consensus 330 ~~Lasg~~D-----g~I~vWdv~~~~l--~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs------~i~~W~~~~~ 393 (1134)
+.|+....| ..|.++++.++.. ...+.........++.++||+ +.++-.+ .+.++++.++
T Consensus 233 ~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 233 TSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT----NTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp TEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS----SEEEEEEECSSCEEEEEEESSSC
T ss_pred CEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC----CEEEEEecCCCCceEEEEECCCC
Confidence 988877665 2577788866531 122222112345678899998 5554221 4556666553
No 254
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.69 E-value=1.1 Score=49.81 Aligned_cols=186 Identities=9% Similarity=0.060 Sum_probs=98.6
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~ 289 (1134)
.+..|.+.++++.++++ .+|.++. +.+....+..... .....+..++++|+++++++|...+..+-.|-. .
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G 193 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQ-----EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--Q 193 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEEC-----SCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--C
T ss_pred CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeec-----CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--C
Confidence 35667776666655544 5665432 1222222221110 112467889999999998887544433333321 1
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccC---CCCceeee
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI---SLSSISSP 366 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h---~~~~V~sv 366 (1134)
.....+ . ......+..+.++|+|+.++++ .+|.+.+++..++.....+... ....+.++
T Consensus 194 ~tW~~~--------------~---~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v 255 (327)
T 2xbg_A 194 TAWEPH--------------N---RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL 255 (327)
T ss_dssp SSCEEE--------------E---CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred CceeEC--------------C---CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence 111111 0 0144678899999999877554 5677777654434433222211 12347788
Q ss_pred EEcCCCCCCcceEEEcc-eeEEEeCCCceEEEEecC---CCccE--EEEecCCEEEeeecCCcEEe
Q 001165 367 IVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEG---SSERV--LIFSFGKCCLNRGVSGMTYA 426 (1134)
Q Consensus 367 ~~sp~~~~~~~~l~sgs-~i~~W~~~~~~l~~~~~~---h~~~v--~~~s~~k~l~S~s~d~ti~~ 426 (1134)
++.+++ ..++.|. ....+..++++-|..... ....+ +.+.....++.++.+|++..
T Consensus 256 ~~~~~~----~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 256 AYRTPN----EVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLR 317 (327)
T ss_dssp EESSSS----CEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEE
T ss_pred EecCCC----EEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEE
Confidence 888766 6666554 334667777777765432 12334 22322344556666665543
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.64 E-value=0.26 Score=61.06 Aligned_cols=260 Identities=13% Similarity=0.151 Sum_probs=137.2
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC---CCCEEEEEEC------C
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP---DNSAFAVGWK------S 338 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~~Lasg~~------D 338 (1134)
+..|.+++.||.|..+|.+ +|+.+.+...........+ .-+| +|. ++++.. +
T Consensus 117 ~~~v~v~~~dg~l~alD~~---------------tG~~~W~~~~~~~~~~~~~---~~~P~v~~~~-v~vg~~~~~~~~~ 177 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAK---------------TGKAIWSQQTTDPAKPYSI---TGAPRVVKGK-VIIGNGGAEYGVR 177 (668)
T ss_dssp BTEEEEECTTSEEEEEETT---------------TCCEEEEEECSCTTSSCBC---CSCCEEETTE-EEECCBCTTTCCB
T ss_pred CCEEEEEcCCCEEEEEECC---------------CCCEeeeeccCCCCCccee---cCCCEEECCE-EEEeCCCCCcCCC
Confidence 4567788899999999998 6776666542100000111 1122 454 444432 5
Q ss_pred CcEEEEecCCCeeEEEeccC-CC-----------------------------CceeeeEEcCCCCCCcceEEEcc-----
Q 001165 339 RGLTVWSVSGCRLMSTIRQI-SL-----------------------------SSISSPIVKPNQDCKYEPLMSGT----- 383 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~~h-~~-----------------------------~~V~sv~~sp~~~~~~~~l~sgs----- 383 (1134)
|.|..+|..+++++-++... +. .....++++|.. ..+..+.
T Consensus 178 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~----~~vy~~~~~g~~ 253 (668)
T 1kv9_A 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL----DLLYVGTGNGSP 253 (668)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT----TEEEEECCCEES
T ss_pred CEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC----CEEEEeCCCCCc
Confidence 88999999988887766421 00 001234565544 3332221
Q ss_pred -----------------eeEEEeCCCceEEEEec-C-CC-------ccE--EEEec-CC---EEEeeecCCcEEeeeeee
Q 001165 384 -----------------SMMQWDEYGYRLYAIEE-G-SS-------ERV--LIFSF-GK---CCLNRGVSGMTYARQVIY 431 (1134)
Q Consensus 384 -----------------~i~~W~~~~~~l~~~~~-~-h~-------~~v--~~~s~-~k---~l~S~s~d~ti~~w~l~~ 431 (1134)
++..+|+.++++.-..+ . |. ... ..+.. ++ .++.++.+|.++++|..+
T Consensus 254 w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 333 (668)
T 1kv9_A 254 WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN 333 (668)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred cccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence 37889988887654433 2 22 222 22223 43 577888899998888666
Q ss_pred CCCeEEEeecC-----------CCcc----cc---ccccccceeeccCCCceEEEEEcCCCCEEEEEe------------
Q 001165 432 GEDRLLVVQSE-----------DTDE----LK---ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG------------ 481 (1134)
Q Consensus 432 ~~~~l~l~~g~-----------~~~~----~~---w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg------------ 481 (1134)
|+..-..-... ..+. .. -..+.+|...-+++|. .++++|+...+.+..
T Consensus 334 G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~--~~a~dp~~g~~yv~~~~~~~~~~~~~~ 411 (668)
T 1kv9_A 334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWH--SMSFNPGTGLVYIPYQEVPGVYRNEGK 411 (668)
T ss_dssp CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSS--CCEEETTTTEEEEEEEECCEEECCCGG
T ss_pred CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCC--cceECCCCCEEEEeccccceEeeeecc
Confidence 55321100000 0000 00 0011233333455664 478888877766521
Q ss_pred ------------------------CCCeE-EEEccCCc--EEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEE
Q 001165 482 ------------------------LHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELL 534 (1134)
Q Consensus 482 ------------------------~dG~i-lwd~~sg~--Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLr 534 (1134)
.+|.+ .||..+|+ |+.-.. .. ..-..+.-.++.+.++ +.+.+|+
T Consensus 412 ~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---~~-~~~~~~~t~gg~vf~g-----~~dg~l~ 482 (668)
T 1kv9_A 412 DFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---TH-WNGGTLSTAGNLVFQG-----TAAGQMH 482 (668)
T ss_dssp GCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---SS-CCCCEEEETTTEEEEE-----CTTSEEE
T ss_pred ccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC---CC-CcCceeEeCCCEEEEE-----CCcccch
Confidence 23778 89998885 654111 00 0001222345555555 4557899
Q ss_pred EEeCCCCCCcceeEEEecCC----ccEEEEecCC
Q 001165 535 FYPRYHLDQSSLLCRKSLLA----KPIVMDVYED 564 (1134)
Q Consensus 535 ly~~~~ld~~~~~~~~~l~~----~~~~l~~~~d 564 (1134)
+|+.. ....+++.++++ .|+.+...+.
T Consensus 483 a~d~~---tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 483 AYSAD---KGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp EEETT---TCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred hhhhh---cChhheEecCCCCcccCceEEEECCE
Confidence 99773 456788877664 4555544444
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.58 E-value=0.31 Score=52.75 Aligned_cols=190 Identities=8% Similarity=-0.060 Sum_probs=115.3
Q ss_pred cEEEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 210 AIIWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
....++|++++.++++.+. ++++..++........ .+.. ........+++.. +++.++...++.+.++|.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~--~i~l---~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~- 94 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN--IHKM---DDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRR- 94 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE--EEEC---CTTCCEEEEEEET-TEEEEEETTCSEEEEEETT-
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE--EEec---CCCcceEEEEEeC-CEEEEEEecCCEEEEEECC-
Confidence 4578899998644443322 4678887775443221 1110 0111223455543 3566677789999999998
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCC----CCce
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS----LSSI 363 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~----~~~V 363 (1134)
+.+.+.++.- . ...| ...+|||+.|.++..++.|.+.|..+.+...++.-.. ....
T Consensus 95 --------------t~~v~~~i~~-g-~~~g----~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 95 --------------TLSNIKNFTH-Q-MKDG----WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp --------------TTEEEEEEEC-C-SSSC----CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred --------------CCcEEEEEEC-C-CCCe----EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 6777777642 1 0112 3366799988887778999999999988877775320 1135
Q ss_pred eeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEecCC-----------C--ccE--EEEec-C-CEEEeeecCCc
Q 001165 364 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-----------S--ERV--LIFSF-G-KCCLNRGVSGM 423 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~~~h-----------~--~~v--~~~s~-~-k~l~S~s~d~t 423 (1134)
+.+.+. ++ ...+... .+.+.|+.+++......-. . ... +++++ + +..+++...+.
T Consensus 155 nele~~-dg----~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 155 NELEYI-NG----EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEEEE-TT----EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred eeEEEE-CC----EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 566666 55 4554432 7888899998887665321 0 111 66777 4 35556666666
Q ss_pred EEeeeeee
Q 001165 424 TYARQVIY 431 (1134)
Q Consensus 424 i~~w~l~~ 431 (1134)
+..-++..
T Consensus 230 v~~i~l~~ 237 (266)
T 2iwa_A 230 LFEIKLHL 237 (266)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 66655543
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.53 E-value=1.1 Score=49.20 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=66.3
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCC--eEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRG--VVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg--~V~lwd~~ 286 (1134)
.....++++++++++++-..+++++.++..+.. .... .....+.++++.|+|+++++..... .|..++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----~~~~----~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----QIHA----TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----EEEE----ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce----EEEE----eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence 456789999999866665578888877654311 1111 1124577899999999776654433 35555544
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 349 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~ 349 (1134)
+++... +... ........++..+++..+++-..++.|.++|..++
T Consensus 104 ---------------~g~~~~-~~~~--~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 104 ---------------DGTVET-LLTL--PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp ---------------TSCEEE-EEEC--TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred ---------------CCeEEE-EEeC--CCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 222211 1100 01122344555666665665556788888887654
No 258
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.50 E-value=1.3 Score=49.19 Aligned_cols=245 Identities=11% Similarity=0.031 Sum_probs=119.9
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccc
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~ 287 (1134)
...+.+|.|.+.+..++ +..+|.++ .+.+....+........ .....+.+++|+| ++.+++ +.+|.| |...|
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~--~~~~~~~~i~~~~-~~~~~~-g~~g~i--~~S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLD--HSDYRFNSVSFQG-NEGWIV-GEPPIM--LHTTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCS--CCCCEEEEEEEET-TEEEEE-EETTEE--EEESS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCC--CCCccEEEEEecC-CeEEEE-ECCCeE--EEECC
Confidence 45789999988888877 45677653 23333333322111100 0123567889987 555555 456644 33333
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCceeeeE
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 367 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~ 367 (1134)
.+.....+. ....+.+.+..+.+.++++.++++. +|.|.. +..++..-..........+.+++
T Consensus 107 gG~tW~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 107 GGQSWSQIP---------------LDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp TTSSCEECC---------------CCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEE
T ss_pred CCCCceECc---------------cccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEE
Confidence 222211111 0011345678888888888777664 555422 33444433333222234678888
Q ss_pred EcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe-cCCCccEE--EEecCCEEEeeecCCcEEeeeeeeCCCeEEEeec
Q 001165 368 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVL--IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQS 441 (1134)
Q Consensus 368 ~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~-~~h~~~v~--~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~~g 441 (1134)
+.|++ ..++.+. -.+.+|.. ++-|... .+....+. .+.+...+...+.++.+.... .+
T Consensus 170 ~~~~~----~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~----~D------- 233 (327)
T 2xbg_A 170 RSPSG----EYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSD----PD------- 233 (327)
T ss_dssp ECTTS----CEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEE----TT-------
T ss_pred EcCCC----cEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEec----CC-------
Confidence 88876 6665543 22333321 2222211 12223332 223311222333344333221 00
Q ss_pred CCCccccccccccceeeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEccCC-cEEEeC
Q 001165 442 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK-KWRVFG 499 (1134)
Q Consensus 442 ~~~~~~~w~~~~~~~~~~~h~~~V~~va~SpdG~~LAsgg~dG~ilwd~~sg-~Wk~F~ 499 (1134)
....|..+..|. ..+...+..+++.++++.+|+++ +|.+.++...| .|....
T Consensus 234 ---~G~tW~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 234 ---NSENWGELLSPL--RRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQDGGQTWQQDV 286 (327)
T ss_dssp ---EEEEECCCBCTT--SSCCSCEEEEEESSSSCEEEEES-TTCEEEESSTTSSCEECG
T ss_pred ---CCCeeEeccCCc--ccCCcceEEEEecCCCEEEEEeC-CCeEEEeCCCCcccEEcC
Confidence 012354443331 11223588899999888777654 77777777644 587654
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.49 E-value=0.054 Score=67.02 Aligned_cols=113 Identities=10% Similarity=0.098 Sum_probs=65.9
Q ss_pred EEEECC-CCCEEEEeeeCC-----------eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC
Q 001165 261 CASIAP-EQQILAVGTRRG-----------VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD 328 (1134)
Q Consensus 261 ~va~sp-dg~llAsG~~dg-----------~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD 328 (1134)
.+++.| ++++++.|+.++ .+.+||.....- . .+..+. ..+.....++++.+|
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--~-----------~~~~~~---~~~~~~~~~~~~~~~ 253 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--S-----------DRTVTV---TKHDMFCPGISMDGN 253 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--C-----------CCEEEE---CSCCCSSCEEEECTT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--E-----------eCcccC---CCCCCccccccCCCC
Confidence 556677 899999987643 578888873220 0 001111 013333445788899
Q ss_pred CCEEEEEEC-CCcEEEEecCCCeeEEEeccCCCC-ceeeeEEcCCCCCCcceEEEcc---------eeEEEeCCCce
Q 001165 329 NSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLS-SISSPIVKPNQDCKYEPLMSGT---------SMMQWDEYGYR 394 (1134)
Q Consensus 329 G~~Lasg~~-Dg~I~vWdv~~~~l~~tl~~h~~~-~V~sv~~sp~~~~~~~~l~sgs---------~i~~W~~~~~~ 394 (1134)
|+.++.|+. ++.+.+||..+.+-.. +...... .-.+++..+++ ..++.|+ .+.+||+.+.+
T Consensus 254 g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R~~~s~~~~~dg----~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 254 GQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVARGYQSSATMSDG----RVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp SCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCCSSCEEEECTTS----CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CCEEEeCCCCCCceEEecCcCCceeE-CCCCCccccccceEEecCC----eEEEEeCcccCCcccccceEeCCCCCc
Confidence 999999984 4689999987765322 2111111 11234444565 5555443 46788887766
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.44 E-value=0.25 Score=52.68 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=72.1
Q ss_pred EEEECCCCCEEEEeeeCC--eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcC-eEEEEECCCCCEEEEEEC
Q 001165 261 CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGP-VSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg--~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~-V~~l~fSPDG~~Lasg~~ 337 (1134)
.+.|++ +.+..+.+.+| .|+.+|++ +++.+.+..- .... -..++.. +++.....|.
T Consensus 25 GL~~~~-~~LyestG~~g~S~v~~vD~~---------------tgkv~~~~~l----~~~~fgeGi~~~-~~~ly~ltw~ 83 (243)
T 3mbr_X 25 GLFYLR-GHLYESTGETGRSSVRKVDLE---------------TGRILQRAEV----PPPYFGAGIVAW-RDRLIQLTWR 83 (243)
T ss_dssp EEEEET-TEEEEEECCTTSCEEEEEETT---------------TCCEEEEEEC----CTTCCEEEEEEE-TTEEEEEESS
T ss_pred cEEEEC-CEEEEECCCCCCceEEEEECC---------------CCCEEEEEeC----CCCcceeEEEEe-CCEEEEEEee
Confidence 677877 67777777654 89999999 7777766542 1111 1223332 2445556688
Q ss_pred CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEE-cc-eeEEEeCCCceEEEEe
Q 001165 338 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s-gs-~i~~W~~~~~~l~~~~ 399 (1134)
++.+.++|..+.+++.+++-.+.+ ..+ .+++. ..++| |+ ++.++|+++.+.....
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~G--wgl--t~dg~---~L~vSdgs~~l~~iDp~t~~~~~~I 140 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEG--WAL--TSDDS---HLYMSDGTAVIRKLDPDTLQQVGSI 140 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCC--CEE--EECSS---CEEEECSSSEEEEECTTTCCEEEEE
T ss_pred CCEEEEEECCcCcEEEEEeCCCCc--eEE--eeCCC---EEEEECCCCeEEEEeCCCCeEEEEE
Confidence 899999999999999998753221 233 34441 44555 33 8888999988776554
No 261
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.44 E-value=0.61 Score=52.64 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=41.5
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCC---ceEEEEE-eCC-----CEEEEEE
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVV-TSS-----LYLHIFK 95 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD---g~~Lav~-t~d-----g~l~lw~ 95 (1134)
++|.|||+++++-..+.|.+++ +.....+.... . .....+.-..++|+|| +..|.++ +.. +.|..|+
T Consensus 36 ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~-v--~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 36 LAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELS-V--YHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEECTTSCEEEEETTTEEEEEE-TTEEEEEEECC-C--CCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEcCCCeEEEEeCCCeEEEEE-CCCccEeecce-E--eecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 8899999998887778899888 42222222111 0 0112344578999999 5554444 432 4566666
Q ss_pred EE
Q 001165 96 VQ 97 (1134)
Q Consensus 96 l~ 97 (1134)
.+
T Consensus 112 ~~ 113 (352)
T 2ism_A 112 HL 113 (352)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.33 E-value=1.2 Score=50.21 Aligned_cols=155 Identities=10% Similarity=0.076 Sum_probs=89.2
Q ss_pred cEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEEEEeccc
Q 001165 210 AIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~lwd~~~ 287 (1134)
.+..++|++..+.+.++. ..++|..++.++..... +.. .+......+++.+. +.+..+-...+.|.+.+++.
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~---~~~---~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE---VVS---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EEC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceE---EEe---CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 467899998877777765 45677776665432211 110 12234567899875 45555556678899988872
Q ss_pred cccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE-EEEECC-CcEEEEecCCCeeEEEeccCCCCceee
Q 001165 288 SASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF-AVGWKS-RGLTVWSVSGCRLMSTIRQISLSSISS 365 (1134)
Q Consensus 288 ~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L-asg~~D-g~I~vWdv~~~~l~~tl~~h~~~~V~s 365 (1134)
.. ....+.. .......+++.|++..| .+-+.+ +.|...++.|... ..+...+....+.
T Consensus 148 ~~---------------~~~l~~~----~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnG 207 (349)
T 3v64_C 148 AH---------------RKVLLWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNG 207 (349)
T ss_dssp CS---------------CEEEECT----TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEE
T ss_pred Cc---------------eEEEEeC----CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcce
Confidence 11 0001111 23456889999965544 444555 7788888876432 2332222345678
Q ss_pred eEEcCCCCCCcceEEE-cc--eeEEEeCCCc
Q 001165 366 PIVKPNQDCKYEPLMS-GT--SMMQWDEYGY 393 (1134)
Q Consensus 366 v~~sp~~~~~~~~l~s-gs--~i~~W~~~~~ 393 (1134)
++++|++. ....+ .. .|..++..+.
T Consensus 208 la~d~~~~---~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 208 LTIDYAGR---RMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEEETTTT---EEEEEETTTTEEEEEETTSC
T ss_pred EEEeCCCC---EEEEEECCCCEEEEEeCCCC
Confidence 89987651 22222 21 6666776654
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.32 E-value=1.1 Score=48.97 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=49.1
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
....++|+|+++++++-..++.|..||.+. . ....+. -.+.+..++++|||+.+++...
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g---------------~-~~~~~~-----~~~~p~gia~~~dG~l~vad~~ 91 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDG---------------N-QQIHAT-----VEGKVSGLAFTSNGDLVATGWN 91 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC---------------C-EEEEEE-----CSSEEEEEEECTTSCEEEEEEC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCC---------------c-eEEEEe-----CCCCceeEEEcCCCcEEEEecc
Confidence 355789999999888877889998888761 1 111111 2245789999999997666554
Q ss_pred CCc--EEEEecCCCee
Q 001165 338 SRG--LTVWSVSGCRL 351 (1134)
Q Consensus 338 Dg~--I~vWdv~~~~l 351 (1134)
.+. |..++..++.+
T Consensus 92 ~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGTV 107 (306)
T ss_dssp TTSCEEEEEECTTSCE
T ss_pred CCcceEEEEcCCCCeE
Confidence 334 55566666654
No 264
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.29 E-value=0.34 Score=59.96 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=55.3
Q ss_pred EEEECCCCCEEEEeeeCCe-------------------EEEEeccccccceeeeeeeccCcceEEEEeecccCCCC----
Q 001165 261 CASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDT---- 317 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~-------------------V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~---- 317 (1134)
.+++.|+..++.+++.++. |..+|.+ +|+.+..+... .|.
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~---------------tG~~~W~~~~~--~~~~wd~ 296 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD---------------TGKLAWHYQVT--PGDSWDF 296 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT---------------TCCEEEEEESS--TTCCSCC
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC---------------CCceeeEeecC--CCccccc
Confidence 5789999889988887764 7777777 67776665420 121
Q ss_pred ---cCeEEEEECCCCC---EEEEEECCCcEEEEecCCCeeEEEe
Q 001165 318 ---GPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 318 ---g~V~~l~fSPDG~---~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
.+........||+ .+++++.+|.+.++|..+++++...
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 3333334445886 7899999999999999988877443
No 265
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.14 E-value=2.2 Score=48.08 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=35.6
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCC---ceEEEEE
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVV 85 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPD---g~~Lav~ 85 (1134)
++|.|||+++++-.++.|.+++.+ ....+.... .. ....+....++|+|| +..|.++
T Consensus 34 ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~~~~~-v~--~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 34 IAPLGGGRYLVTERPGRLVLISPS-GKKLVASFD-VA--NVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp EEEEETTEEEEEETTTEEEEECSS-CEEEEEECC-CC--CSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEcCCCeEEEEeCCCEEEEEeCC-CceEeeccc-ee--ecCCCceeeEEeCCCCCcCCEEEEE
Confidence 789999999888777889888754 322222211 00 012345678999998 4444444
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.03 E-value=1.4 Score=50.35 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=87.6
Q ss_pred ccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCC-CEEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ-QILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg-~llAsG~~dg~V~lwd~~ 286 (1134)
..+..++|++..+.+.++. ..++|+.++.++..... +.. .+......+++.+.+ .+..+-...+.|.+.+++
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~---~~~---~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE---VVS---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE---EEC---SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE---EEe---CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence 3467899998777777665 45677776655432111 110 112344568888754 455555567788888776
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE-ECC-CcEEEEecCCCeeEEEeccCCCCcee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG-WKS-RGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg-~~D-g~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
... ... .+.. .......|++.|++..|..+ +.+ +.|...++.+......... +....+
T Consensus 190 g~~--~~~-------------l~~~----~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~~~~Pn 249 (386)
T 3v65_B 190 GAH--RKV-------------LLWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT-HLFWPN 249 (386)
T ss_dssp SCS--CEE-------------EECS----SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEE
T ss_pred CCc--eEE-------------eecC----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC-CCCCee
Confidence 211 000 1111 23456889999976655544 444 6788888876543322222 234567
Q ss_pred eeEEcCCCCCCcceEEE-cc--eeEEEeCCCc
Q 001165 365 SPIVKPNQDCKYEPLMS-GT--SMMQWDEYGY 393 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~s-gs--~i~~W~~~~~ 393 (1134)
.++++|++. ....+ .. .|..++..+.
T Consensus 250 Glavd~~~~---~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 250 GLTIDYAGR---RMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEEGGGT---EEEEEETTTTEEEEECTTSC
T ss_pred eEEEeCCCC---EEEEEECCCCEEEEEeCCCC
Confidence 888987651 22222 22 6667776654
No 267
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.93 E-value=4.7 Score=49.14 Aligned_cols=235 Identities=11% Similarity=0.001 Sum_probs=115.4
Q ss_pred EEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe-CCCEEEEEEEEecCc-ceecCCCCC
Q 001165 33 LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEK-SIQIGGKQP 110 (1134)
Q Consensus 33 llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~lw~l~~~~~-~~~~~~~~~ 110 (1134)
++.-+....|+.-+.+..... +.. .....+....++|.|++..|..+. ..+.|..++++.... .....
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~---~~~---~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~---- 80 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKEN---ATI---VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV---- 80 (619)
T ss_dssp CEEEECSSBEEEECCC---------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC----
T ss_pred eEEEeccccEEEEeCCCCcce---EEE---EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe----
Confidence 334445566777777521100 000 011234467899999777776654 456677777654311 00000
Q ss_pred CCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeccccCCCccccccccccCCCc
Q 001165 111 SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (1134)
Q Consensus 111 ~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~-dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 189 (1134)
.+ +... .=.++...++.++++.. ++.|.+...++.....+.
T Consensus 81 ------------~~---~~~P--~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~--------------------- 122 (619)
T 3s94_A 81 ------------SG---LLSP--DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF--------------------- 122 (619)
T ss_dssp ------------SS---CSCE--EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------------
T ss_pred ------------CC---CCCc--CeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE---------------------
Confidence 00 0000 01233344566777654 457777766654321110
Q ss_pred cccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC
Q 001165 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE 267 (1134)
Q Consensus 190 l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd 267 (1134)
...-....+|+++|..+.+.++.- .+++...+.++..... +.. ........++++++
T Consensus 123 ---------------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~---l~~---~~~~~P~Glald~~ 181 (619)
T 3s94_A 123 ---------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---IIN---SEIYWPNGLTLDYE 181 (619)
T ss_dssp ---------------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EEC---SSCSSEEEEEEETT
T ss_pred ---------------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE---EEe---CCCCCCcEEEEEcc
Confidence 011122356888888776666652 3566555544322211 110 01245678999996
Q ss_pred CCEE-EEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 268 QQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 268 g~ll-AsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
++.| .+=...+.|..++++... .+.+ ..+ ...|. ..|++..| +...+-+.++.|...|.
T Consensus 182 ~~~LY~aD~~~~~I~~~~~dG~~--~~~~-------------~~~-~~~~P---~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLDGTN--RQAV-------------VKG-SLPHP---FALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp TTEEEEEETTTCCEEEESSSCCE--EC-----------------------C---CCEEESSS-EEEEECTTTCSEEEEES
T ss_pred CCEEEEEeCCCCeEEEecCCCCc--cEEE-------------EeC-CCCCc---eEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 5544 444456778888876211 1111 000 00122 35677666 55555667789999998
Q ss_pred CCCeeEEEec
Q 001165 347 SGCRLMSTIR 356 (1134)
Q Consensus 347 ~~~~l~~tl~ 356 (1134)
.++.....+.
T Consensus 242 ~tg~~~~~i~ 251 (619)
T 3s94_A 242 YTGEGLREIH 251 (619)
T ss_dssp SSCCCCEECC
T ss_pred CCCcccEEEe
Confidence 7776555554
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.87 E-value=1.8 Score=46.47 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=71.0
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCc-cccceecc---cccCCCCCeEEEEECCC-CCEEEEeeeCCeEEE
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKI---DKELGSGDAVCASIAPE-QQILAVGTRRGVVEL 282 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~-~~~~~~~~---~~~~~~~~~~~va~spd-g~llAsG~~dg~V~l 282 (1134)
+...-.++|+|.++.+.++...+...++.+++... ........ ..-....+...++++|. +.+++....+..+..
T Consensus 120 N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~ 199 (255)
T 3qqz_A 120 NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQE 199 (255)
T ss_dssp SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEE
Confidence 44578899999998888887776666776653111 01111100 00012356788999995 557777777888888
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEe
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 345 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWd 345 (1134)
+|.+. .....+++.....+ ....-..-..|+|.|+|+..++ ++-+-+.++.
T Consensus 200 ~d~~g--~~~~~~~L~~g~~~---------l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 200 VTLVG--EVIGEMSLTKGSRG---------LSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp ECTTC--CEEEEEECSTTGGG---------CSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCC--CEEEEEEcCCccCC---------cccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 88762 12222222210000 0000123578999999985555 6655444443
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.85 E-value=2.4 Score=48.39 Aligned_cols=121 Identities=13% Similarity=0.057 Sum_probs=70.0
Q ss_pred cEEEEEEcCCCCeEEEEEcC--CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE-EEeeeCCeEEEEecc
Q 001165 210 AIIWLELCLPMRLLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLA 286 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sD--G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll-AsG~~dg~V~lwd~~ 286 (1134)
....|+++|.++.+.++... ++|+.++.++..... +.. .+......++|+|+++.| .+=+..+.|..++++
T Consensus 203 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 203 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE---EEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 45788999988777776543 566665554322111 110 122456789999865544 444556789998886
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
.. ..+.+ +.. ..+....|++ ..+....+.+..+.|...+..++....++.
T Consensus 277 G~--~~~~~-------------~~~----~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 277 GS--HRKAV-------------ISQ----GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SC--SCEEE-------------ECS----SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC--eeEEE-------------EEC----CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 21 11111 100 2234566777 455666677777888888865555555554
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.81 E-value=0.45 Score=51.25 Aligned_cols=110 Identities=9% Similarity=0.043 Sum_probs=67.1
Q ss_pred eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccC
Q 001165 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~ 301 (1134)
+......++.+.+++....... ..+.. . .... .+.++++.|.++..+++|.++|.+
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl~~~--~ti~~---~--~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~--------------- 163 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPPQRE--RTTRY---S--GEGW--GLCYWNGKLVRSDGGTMLTFHEPD--------------- 163 (268)
T ss_dssp EEEEESSSCEEEEEETTTTEEE--EEEEC---S--SCCC--CEEEETTEEEEECSSSEEEEECTT---------------
T ss_pred EEEEEccCCEEEEEECCcCcEE--EEEeC---C--Ccee--EEecCCCEEEEECCCCEEEEEcCC---------------
Confidence 3333445778888777544322 12221 1 1111 222567766666668899999987
Q ss_pred cceEEEEeeccc-CCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 302 MREVYYTFCRYS-MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 302 ~~~~l~~l~~~~-~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
+.+.+.++.-.. ...-..++.+.|. ||+..|..|.+..|.+-|..+++.+.++.
T Consensus 164 T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 164 GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 444444432100 0011245778887 89888888888999999999999888775
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.80 E-value=0.34 Score=52.18 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=71.4
Q ss_pred EEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCc-CeEEEEECCCCCEEEEEECCC
Q 001165 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTG-PVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g-~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
.+.|+ ++.+..+.+.+|.|+++|++ +++.+.++ - ... --..++... ++..+..|.++
T Consensus 59 GL~~~-~~~Ly~stG~~g~v~~iD~~---------------Tgkv~~~~-l----~~~~FgeGit~~g-~~Ly~ltw~~~ 116 (268)
T 3nok_A 59 GLVFH-QGHFFESTGHQGTLRQLSLE---------------SAQPVWME-R----LGNIFAEGLASDG-ERLYQLTWTEG 116 (268)
T ss_dssp EEEEE-TTEEEEEETTTTEEEECCSS---------------CSSCSEEE-E----CTTCCEEEEEECS-SCEEEEESSSC
T ss_pred eEEEE-CCEEEEEcCCCCEEEEEECC---------------CCcEEeEE-C----CCCcceeEEEEeC-CEEEEEEccCC
Confidence 56776 46788888889999999998 56655554 1 111 112244432 34555667889
Q ss_pred cEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEE-cc-eeEEEeCCCceEEEEe
Q 001165 340 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 340 ~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~s-gs-~i~~W~~~~~~l~~~~ 399 (1134)
.+.++|..+.+++.++.-.+. -..++ +++ ...++| |+ ++.++|+++.+.....
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg---~~L~vSdGs~~l~~iDp~T~~v~~~I 171 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE--GWGLC--YWN---GKLVRSDGGTMLTFHEPDGFALVGAV 171 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC--CCCEE--EET---TEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred EEEEEECCcCcEEEEEeCCCc--eeEEe--cCC---CEEEEECCCCEEEEEcCCCCeEEEEE
Confidence 999999999999998875321 12333 444 134444 33 8888999998876654
No 272
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.77 E-value=8.1 Score=50.62 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=69.8
Q ss_pred CCCceEEEE---EcC-CCCEEEEEe----------CCCeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEe
Q 001165 461 QNWPVQHVA---ASK-DGMFLAVAG----------LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYI 525 (1134)
Q Consensus 461 h~~~V~~va---~Sp-dG~~LAsgg----------~dG~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~ 525 (1134)
.+..+.+++ |.. ...++++|+ ..|.+ +|++..++.+..... +.+..|..++-.++.+++|
T Consensus 827 ~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~--~v~g~v~al~~~~g~Lla~--- 901 (1158)
T 3ei3_A 827 QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK--EVKGAVYSMVEFNGKLLAS--- 901 (1158)
T ss_dssp TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE--EESSCEEEEEEETTEEEEE---
T ss_pred CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE--EcCCcCEEEeeeCCEEEEE---
Confidence 344455554 332 357999987 46889 999987776655332 2234577888888888876
Q ss_pred cCCCeeEEEEEeCCCCCCcceeEE-EecCCc-cEEEEecCCEEEEEEcCCeEEEEEEEE
Q 001165 526 DSSNTYELLFYPRYHLDQSSLLCR-KSLLAK-PIVMDVYEDYILVTYRPFDVHIFHVKL 582 (1134)
Q Consensus 526 ~~~~~~eLrly~~~~ld~~~~~~~-~~l~~~-~~~l~~~~d~llv~~~d~~i~l~~~~~ 582 (1134)
-...|++|.... + ..+... ..++.- ++.+...++.+++...-..+.++.|+.
T Consensus 902 ---ig~~l~vy~l~~-~-~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 902 ---INSTVRLYEWTT-E-KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp ---ETTEEEEEEECT-T-SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred ---cCCEEEEEECCC-C-ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 125689997741 1 112211 123321 235567789999987777888888863
No 273
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.76 E-value=1.8 Score=52.65 Aligned_cols=79 Identities=9% Similarity=-0.024 Sum_probs=44.7
Q ss_pred EEECCCCCE----EEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEE-EEECCCCCEEEEEE
Q 001165 262 ASIAPEQQI----LAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSC-IAWTPDNSAFAVGW 336 (1134)
Q Consensus 262 va~spdg~l----lAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~-l~fSPDG~~Lasg~ 336 (1134)
++++|.+.. |.+++.|+.+..+|.+ +|+.+.............+++ -.. .+|..++.++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~---------------TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~ 174 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAE---------------TGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSS 174 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETT---------------TCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCB
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECC---------------CCCEEEeecCCCCCccceeecCCEE-ECCEEEEEec
Confidence 455454444 7778889999999988 666665543200000001111 000 1554443332
Q ss_pred -----CCCcEEEEecCCCeeEEEec
Q 001165 337 -----KSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 337 -----~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
.+|.|..+|..+++++-++.
T Consensus 175 g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 175 GAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp CGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCeEEEEECCCCcEEEEEc
Confidence 37899999999888776654
No 274
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.50 E-value=3 Score=46.87 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC----CCEEEEeeeC-----CeE
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE----QQILAVGTRR-----GVV 280 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd----g~llAsG~~d-----g~V 280 (1134)
.-..|+|.|+++++ ++..+|+|+.++ +. .......+. ....+......++|+|+ +.+.++-..+ +.|
T Consensus 32 ~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g-~~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGML-IAERPGRIRLFR-EG-RLSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEE-EEETTTEEEEEE-TT-EEEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEE-EEeCCCeEEEEE-CC-CccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 35689999999854 455679998877 22 111111111 00112356789999998 4455544433 567
Q ss_pred EEEeccccccceeeeeeeccCcceE-EEEeec-ccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 281 ELYDLAESASLIRTVSLYDWGMREV-YYTFCR-YSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 281 ~lwd~~~~~~~~~~l~l~~~~~~~~-l~~l~~-~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
..|+.++.. .. +.+. +..+.. ....|.+ ..++|.|||...++-+
T Consensus 108 ~r~~~~~~~-~~---------~~~~l~~~~p~~~~~~h~~--~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGER-GV---------LDRVVLDGIPARPHGLHSG--GRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSC-EE---------EEEEEEEEECCCTTCCCCC--CCEEECTTSCEEEECC
T ss_pred EEEEeCCCC-cC---------ceEEEEEeCCCCCCCCcCC--ceEEECCCCCEEEEEC
Confidence 777765321 00 0111 111110 0012433 5799999998666644
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.46 E-value=4 Score=44.97 Aligned_cols=233 Identities=6% Similarity=-0.088 Sum_probs=120.1
Q ss_pred EEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEE-eCCCEEEEEEEEec----CcceecCCC
Q 001165 34 LLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-TSSLYLHIFKVQIT----EKSIQIGGK 108 (1134)
Q Consensus 34 lAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~-t~dg~l~lw~l~~~----~~~~~~~~~ 108 (1134)
|..+..+.|+..+.+.... .... ...+....++|.|++..|..+ ..++.|..++++.. ......
T Consensus 4 ll~~~~~~I~~i~~~~~~~-~~~~-------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--- 72 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEY-TSLI-------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--- 72 (316)
T ss_dssp EEEECBSSEEEEETTSCCC-EEEE-------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---
T ss_pred EEEECCCeEEEEECCCcce-Eehh-------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE---
Confidence 3344555677777763221 1111 112345789999977666655 45578888887641 000000
Q ss_pred CCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeccccCCCccccccccccCC
Q 001165 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (1134)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t-~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~i~~~~~ 187 (1134)
..+ +... .-.++.+.++.++++. .++.|.+++.++.....+
T Consensus 73 -------------~~~---~~~p--~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-------------------- 114 (316)
T 1ijq_A 73 -------------SRD---IQAP--DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-------------------- 114 (316)
T ss_dssp -------------CSS---CSCC--CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE--------------------
T ss_pred -------------eCC---CCCc--CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE--------------------
Confidence 000 0000 0123333456676664 456777766655321111
Q ss_pred CccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcC--CeEEEEEeccCCccccceecccccCCCCCeEEEEEC
Q 001165 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIA 265 (1134)
Q Consensus 188 ~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sD--G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~s 265 (1134)
..........++++|.++.+.++... ++++.++.++..... +.. ........++++
T Consensus 115 ----------------~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~---~~~---~~~~~P~gla~d 172 (316)
T 1ijq_A 115 ----------------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVT---ENIQWPNGITLD 172 (316)
T ss_dssp ----------------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EEC---SSCSCEEEEEEE
T ss_pred ----------------EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE---EEE---CCCCCceEEEEe
Confidence 00112345788999987777776543 567666554322111 110 112456789999
Q ss_pred CCCCEEE-EeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEE
Q 001165 266 PEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 344 (1134)
Q Consensus 266 pdg~llA-sG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vW 344 (1134)
|+++.|- +-+..+.|..++++.. ..+.+ ... ....+....|++. .|+...+-+..+.|...
T Consensus 173 ~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~-----------~~~----~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 173 LLSGRLYWVDSKLHSISSIDVNGG--NRKTI-----------LED----EKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSC--SCEEE-----------EEC----TTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred ccCCEEEEEECCCCeEEEEecCCC--ceEEE-----------eec----CCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 8765554 4445678999998721 11111 000 0012334566764 46666666777889888
Q ss_pred ecCCCeeEEEe
Q 001165 345 SVSGCRLMSTI 355 (1134)
Q Consensus 345 dv~~~~l~~tl 355 (1134)
+..++....++
T Consensus 235 ~~~~g~~~~~i 245 (316)
T 1ijq_A 235 NRLTGSDVNLL 245 (316)
T ss_dssp ETTTCCCCEEE
T ss_pred eCCCCcceEEE
Confidence 87665544444
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.38 E-value=4.6 Score=45.23 Aligned_cols=121 Identities=13% Similarity=0.057 Sum_probs=68.9
Q ss_pred cEEEEEEcCCCCeEEEEEcC--CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEE-EEeeeCCeEEEEecc
Q 001165 210 AIIWLELCLPMRLLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLA 286 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sD--G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~ll-AsG~~dg~V~lwd~~ 286 (1134)
....|+++|.++.+.++... ++|+.++.++..... +.. .+......++|+|+++.| .+=+..+.|..++++
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~---~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEE---CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 35788999977776666543 566666554322111 100 122456789999865544 444556789999887
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
.. ..+.+ +.. ..+....|++ .+|....+-+..+.|...+..++....++.
T Consensus 234 G~--~~~~~-------------~~~----~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 234 GS--HRKAV-------------ISQ----GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SC--SCEEE-------------ECS----SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC--ceEEE-------------EeC----CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 21 11111 000 2234466777 456666666777888888855555444443
No 277
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.36 E-value=0.43 Score=51.35 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=68.1
Q ss_pred CCeEEEE-EcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 220 MRLLFVL-YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 220 ~~~la~~-~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
++.+..+ ..++++.+++....... ..+.. .. . ...++++++.|..+..+++|.++|..
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~--~ti~~---~~--e--G~glt~dg~~L~~SdGs~~i~~iDp~------------ 154 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQV--RSFNY---DG--E--GWGLTHNDQYLIMSDGTPVLRFLDPE------------ 154 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEE--EEEEC---SS--C--CCCEEECSSCEEECCSSSEEEEECTT------------
T ss_pred CCEEEEEEeeCCEEEEEECccCcEE--EEEEC---CC--C--ceEEecCCCEEEEECCCCeEEEEcCC------------
Confidence 4444443 35778888777554322 12221 11 1 12233567766665557889999887
Q ss_pred ccCcceEEEEeecccCCC-CcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 299 DWGMREVYYTFCRYSMDD-TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h-~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
+.+.+.++.-...+. -..++.+.|. ||+..|..+.++.|.+-|..+++...++.-
T Consensus 155 ---T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 155 ---SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ---TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ---CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 444444433200001 1335668886 898888888899999999999998888754
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.28 E-value=3.4 Score=47.92 Aligned_cols=151 Identities=7% Similarity=0.049 Sum_probs=83.5
Q ss_pred EEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee-CC----eEEEEe
Q 001165 211 IIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-RG----VVELYD 284 (1134)
Q Consensus 211 V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-dg----~V~lwd 284 (1134)
...|+++| +.+.+.++...+++..++....... .+. ........++|+++++.|.++.. ++ .+..++
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~---~~~----~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS---TVY----SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---EEE----CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---EEe----cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 35678898 4555666655566766665432211 111 12356788999999994444433 22 233333
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEEEECCCcEEEEecCCCeeEEEeccCCCCce
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
.+ ..... ...+.. ......++++| +|..+++-..++.|..++..++.............-
T Consensus 212 ~~--g~~~~------------~~~l~~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P 272 (430)
T 3tc9_A 212 RE--SGFKV------------ITELTK-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE 272 (430)
T ss_dssp GG--GTSCS------------EEEEEE-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC
T ss_pred CC--Cceee------------eeeecc-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc
Confidence 22 11110 011111 12245688999 787777777788999999987654222221112346
Q ss_pred eeeEEcCCCCCCcc-eEEEcc---eeEEEeCC
Q 001165 364 SSPIVKPNQDCKYE-PLMSGT---SMMQWDEY 391 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~-~l~sgs---~i~~W~~~ 391 (1134)
..++++|++ + ..++-. .+..++.+
T Consensus 273 ~gia~~pdG----~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 273 FHIQFHPSG----NYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEECTTS----SEEEEEETTTTEEEEEEEE
T ss_pred eeEEEcCCC----CEEEEEECCCCEEEEEeCC
Confidence 789999998 5 334322 66666554
No 279
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.13 E-value=1.2 Score=47.40 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=66.1
Q ss_pred eEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccC
Q 001165 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1134)
Q Consensus 222 ~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~ 301 (1134)
+......++++.+++....... ..+.. . .....+ .++++.|.++..+++|.++|..
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~--~ti~~---~--~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~--------------- 132 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPR--ARFRY---P--GEGWAL--TSDDSHLYMSDGTAVIRKLDPD--------------- 132 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEE--EEEEC---S--SCCCEE--EECSSCEEEECSSSEEEEECTT---------------
T ss_pred EEEEEeeCCEEEEEECCcCcEE--EEEeC---C--CCceEE--eeCCCEEEEECCCCeEEEEeCC---------------
Confidence 3444445788888776544322 12221 1 111223 3566655555568899999987
Q ss_pred cceEEEEeecccC-CCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 302 MREVYYTFCRYSM-DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 302 ~~~~l~~l~~~~~-~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
+.+.+.++.-... ..-..++.+.|. +|+..|..|.+..|.+-|..+++.+..+.
T Consensus 133 t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 133 TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 3444433321000 011345677776 88888888888999999999999888875
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.10 E-value=2.7 Score=46.62 Aligned_cols=120 Identities=8% Similarity=-0.032 Sum_probs=68.8
Q ss_pred cEEEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEE-EeeeCCeEEEEecc
Q 001165 210 AIIWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILA-VGTRRGVVELYDLA 286 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llA-sG~~dg~V~lwd~~ 286 (1134)
....++++|.++.+.++.. .++|+..+.++..... +.. .+......++|+|+++.|- +=+..+.|..++++
T Consensus 123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---IIN---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE---EEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE---EEE---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 3568889998777777763 4667666554322111 110 1124567899999665544 44556889999987
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
.. ..+.+. .+ ..+....+++.. +..+.+-+..+.|...+..++.....+
T Consensus 197 G~--~~~~~~-------------~~----~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 197 GT--NRQAVV-------------KG----SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp SC--SCEEEE-------------CS----CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CC--ceEEEe-------------cC----CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 21 111110 00 223345666643 345556667788888888665544444
No 281
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.09 E-value=5 Score=45.07 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=34.7
Q ss_pred EEEeecCe-EEEEEcCCeEEEeecCCccee--EEEeecChhhHHhhcceeEEEEcCC---ceEEEEE
Q 001165 25 IYFKVNNG-LLLIASPCHIELWSSSQHKVR--LGKYKRDSESVQREGENLQAVWSPD---TKLIAVV 85 (1134)
Q Consensus 25 v~fS~dg~-llAs~s~~~l~IW~~~~~~~~--l~~~~r~~~sl~~~G~~~~v~wSPD---g~~Lav~ 85 (1134)
++|.|||+ ++++-..+.|++++.+ .... +....... ....+....++|+|| +..|.++
T Consensus 23 i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~--~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 23 LAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVW--AHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp EEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCC--CSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred EEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccc--cCCCCCceeEEECCCCCCCCEEEEE
Confidence 88999999 8888777888888764 3211 11110000 012334578999996 5555544
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.09 E-value=3.4 Score=49.88 Aligned_cols=56 Identities=5% Similarity=-0.132 Sum_probs=31.5
Q ss_pred CCcEEEEecCCCeeEEEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCCCceEEEEe
Q 001165 338 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 399 (1134)
Q Consensus 338 Dg~I~vWdv~~~~l~~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~~~~l~~~~ 399 (1134)
+|.+..||..+++...+.... ..+.+..+...+ ..+..++ .+..||..+++++-..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~g----g~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKG----GLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES--SCCCSBCEEETT----TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCC--CCccceeEEECC----CEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 478999999888877665432 112222211112 2222232 7888898877765544
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.73 E-value=7.6 Score=44.35 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=91.9
Q ss_pred cccEEEEEEcCCCCeEEEEEc-CCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEe
Q 001165 208 SSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd 284 (1134)
...+..|+|++..+.+.++.. +++|+.++.++... .....+.. .+......+++.+ .+++..+-...+.|.+.+
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---CCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence 345778999998887777754 56777766643210 00111110 1234577899998 455666656678899888
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-C-CCcEEEEecCCCeeEEEeccCCCCc
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-K-SRGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~-Dg~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
++. ......+.. .......|++.|.+..|..+. . .+.|...++.|......+.. +...
T Consensus 188 ~~g---------------~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~-~l~~ 247 (400)
T 3p5b_L 188 TKG---------------VKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQW 247 (400)
T ss_dssp TTT---------------CSEEEEEEC----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS-SCSC
T ss_pred CCC---------------CceEEEEeC----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC-CCCc
Confidence 872 111111111 233468899999666555543 3 37888888877543332222 2345
Q ss_pred eeeeEEcCCCCCCcceEEE-cc--eeEEEeCCCceE
Q 001165 363 ISSPIVKPNQDCKYEPLMS-GT--SMMQWDEYGYRL 395 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~l~s-gs--~i~~W~~~~~~l 395 (1134)
.+.+++++++. ....+ .. +|...+.++...
T Consensus 248 P~glavd~~~~---~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 248 PNGITLDLLSG---RLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp EEEEEEETTTT---EEEEEETTTTEEEEEETTSCCC
T ss_pred eEEEEEEeCCC---EEEEEECCCCEEEEEeCCCCcc
Confidence 78888987651 22222 22 666677766443
No 284
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.72 E-value=2.9 Score=50.45 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC---CCCEEEEEEC------C
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP---DNSAFAVGWK------S 338 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP---DG~~Lasg~~------D 338 (1134)
+..+.+++.|+.+..+|.. +|+.+.+.... .+... ..+.-+| +|. +++++. +
T Consensus 115 ~~~v~v~~~dg~l~alD~~---------------tG~~~W~~~~~--~~~~~-~~~~~~P~v~~g~-v~vg~~~~~~~~~ 175 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAK---------------TGKINWEVEVC--DPKVG-STLTQAPFVAKDT-VLMGCSGAELGVR 175 (571)
T ss_dssp TTEEEEECTTSEEEEEETT---------------TCCEEEEEECC--CGGGT-CBCCSCCEEETTE-EEEECBCGGGTCC
T ss_pred CCEEEEEeCCCEEEEEECC---------------CCCEEEEecCC--CCCcc-ceeccCCEEECCE-EEEEecCCccCCC
Confidence 4567777888999999988 66666554320 01000 0011122 454 445543 7
Q ss_pred CcEEEEecCCCeeEEEec
Q 001165 339 RGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 339 g~I~vWdv~~~~l~~tl~ 356 (1134)
|.|..+|..+++.+-++.
T Consensus 176 g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 176 GAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp CEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCcEEEEEc
Confidence 899999999888776654
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.42 E-value=9.1 Score=47.97 Aligned_cols=165 Identities=10% Similarity=0.023 Sum_probs=91.8
Q ss_pred cccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCcc-ccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEe
Q 001165 208 SSAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLK-LAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYD 284 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd 284 (1134)
...+..|+|++..+.+.++. ..++|+.+++++.... ....+.. .+......+|+.+.++ +..+-...+.|.+.+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe---cCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 34567899999776666665 4567777666542110 0011110 1224566789988764 555556678999998
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CC-CcEEEEecCCCeeEEEeccCCCCc
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KS-RGLTVWSVSGCRLMSTIRQISLSS 362 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~D-g~I~vWdv~~~~l~~tl~~h~~~~ 362 (1134)
++. .. ..++.. ........|++.|.+..|..+. .+ +.|.+.++.|......+.. +...
T Consensus 500 ldG---------------~~-~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~-~l~~ 559 (791)
T 3m0c_C 500 TKG---------------VK-RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQW 559 (791)
T ss_dssp TTS---------------SS-EEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-SCSC
T ss_pred CCC---------------Ce-EEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-CCCC
Confidence 872 11 111110 1234578999999755555443 33 6788888877554333332 2456
Q ss_pred eeeeEEcCCCCCCcce-EEEcc--eeEEEeCCCceEEEE
Q 001165 363 ISSPIVKPNQDCKYEP-LMSGT--SMMQWDEYGYRLYAI 398 (1134)
Q Consensus 363 V~sv~~sp~~~~~~~~-l~sgs--~i~~W~~~~~~l~~~ 398 (1134)
.+.+++++.+. .. ++-.. +|...++.+.....+
T Consensus 560 P~GLavD~~~~---~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 560 PNGITLDLLSG---RLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTT---EEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEecCCC---eEEEEeCCCCcEEEEecCCCceEEE
Confidence 78888886651 22 22222 566667666544333
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.42 E-value=7.5 Score=42.90 Aligned_cols=157 Identities=8% Similarity=0.007 Sum_probs=88.4
Q ss_pred ccEEEEEEcCCCCeEEEEEc-CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~lwd~~ 286 (1134)
..+..++|++..+.+.++.. +++|..++.++..... .+.. .+......+++.+. +.+..+-...+.|.+++++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~~~---~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVV---SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EEEE---ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EEEc---CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence 34668899998777777654 4667666655432111 1110 12234567889874 4555555567889999887
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE--CCCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~--~Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
... ...+.. ........+++.|.+..|..+. ..+.|...+..|.... .+...+...-+
T Consensus 110 G~~----------------~~~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l~~Pn 169 (318)
T 3sov_A 110 GSL----------------RKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPN 169 (318)
T ss_dssp SCS----------------CEEEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEE
T ss_pred CCc----------------EEEEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEEECCCCCcc
Confidence 211 111100 1234568899999766555554 2577888888764322 22211234567
Q ss_pred eeEEcCCCCCCcceEEE-cc--eeEEEeCCCc
Q 001165 365 SPIVKPNQDCKYEPLMS-GT--SMMQWDEYGY 393 (1134)
Q Consensus 365 sv~~sp~~~~~~~~l~s-gs--~i~~W~~~~~ 393 (1134)
.++++|++. ....+ .. .|..++..+.
T Consensus 170 glavd~~~~---~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 170 GLTLDYEEQ---KLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp EEEEETTTT---EEEEEETTTTEEEEEETTSC
T ss_pred EEEEeccCC---EEEEEECCCCEEEEEcCCCC
Confidence 889988651 22232 21 6667777654
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=94.25 E-value=10 Score=43.82 Aligned_cols=117 Identities=11% Similarity=0.060 Sum_probs=64.3
Q ss_pred ccEEEEEEcCCCCeEEEEEcCC---eEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEEEe
Q 001165 209 SAIIWLELCLPMRLLFVLYSNG---QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG---~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~lwd 284 (1134)
.....++++++++ +.++...+ ...++.+............. .......++++| ++.+.++-..++.|+.++
T Consensus 182 ~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d 256 (433)
T 4hw6_A 182 GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYD 256 (433)
T ss_dssp SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEEC
T ss_pred CCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEE
Confidence 4578899999999 45544322 11122221111000000000 113445688999 777777666778888888
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE-ECCCcEEEEecC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVS 347 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg-~~Dg~I~vWdv~ 347 (1134)
.+ +++....+... +....-..++|+|||+.|..+ ...+.|..++..
T Consensus 257 ~~---------------~g~~~~~~~~~--~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 257 PA---------------TGTLTEEEVMM--DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TT---------------TCCEEEEEEEC--SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CC---------------CCeEEEEEecc--CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 76 23221111100 012223469999999965555 456789888765
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.19 E-value=0.96 Score=52.60 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=68.5
Q ss_pred ccEEEEEEcCCCCeEEEEEc-CC----eEEEEEeccCCccccceecccccCCCCCeEEEEECC-CCCEEEEeeeCCeEEE
Q 001165 209 SAIIWLELCLPMRLLFVLYS-NG----QLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAP-EQQILAVGTRRGVVEL 282 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~s-DG----~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~sp-dg~llAsG~~dg~V~l 282 (1134)
.....|+++++++.+.++.. ++ .+....... .......+. .......++++| ++.++++-..++.|..
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~~~~~l~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~ 252 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFKVITELT-----KGQNCNGAETHPINGELYFNSWNAGQVFR 252 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSCSEEEEE-----ECSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ceeeeeeec-----cCCCceEEEEeCCCCEEEEEECCCCEEEE
Confidence 45678999999996666554 22 222222221 111001111 123456789999 7887777777889999
Q ss_pred EeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE-ECCCcEEEEecCC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSG 348 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg-~~Dg~I~vWdv~~ 348 (1134)
|+.+ +++....... .....-..|+|+|+|++|..+ ..++.|..++..+
T Consensus 253 ~~~~---------------~~~~~~~~~~---~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 253 YDFT---------------TQETTPLFTI---QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EETT---------------TTEEEEEEEC---SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECC---------------CCcEEEEEEc---CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9987 2222111000 012345789999999955555 4568899988764
No 289
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.02 E-value=9.3 Score=42.87 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=59.8
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC----CCEEEEeee---C----
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE----QQILAVGTR---R---- 277 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd----g~llAsG~~---d---- 277 (1134)
.....|+|.|++++ .++..+|+|+.++.++. .....+.. ...+......++|+|+ +.+.++-+. +
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~~G~--~~~~~~~v-~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISPSGK--KLVASFDV-ANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECSSCE--EEEEECCC-CCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeCCCc--eEeeccce-eecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34578999999984 44566799988753221 11111110 0012356789999997 555554332 3
Q ss_pred CeEEEEeccccccceeeeeeeccCcceEE-EEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 278 GVVELYDLAESASLIRTVSLYDWGMREVY-YTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 278 g~V~lwd~~~~~~~~~~l~l~~~~~~~~l-~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
+.|..|+.+....... +.+.+ ..+.. ...|. -..|+|.|||++.++-+.
T Consensus 105 ~~v~r~~~~~~~~~~~--------~~~~l~~~~~~-~~~h~--~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLK--------EVKTLIDGIPG-AYIHN--GGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEEECSSSCCEE--------EEEEEEEEEEC-CSSCC--CCCEEECTTSCEEEECCC
T ss_pred eEEEEEEECCCCcCcC--------ccEEEEEcCCC-CCCcC--CceEEECCCCcEEEEECC
Confidence 4566666653211110 01111 11111 11243 357999999997776543
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.76 E-value=16 Score=44.12 Aligned_cols=71 Identities=11% Similarity=-0.055 Sum_probs=41.1
Q ss_pred CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccC-----CCCcCeEEEEE-CCCCC-EEEEEE----
Q 001165 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSM-----DDTGPVSCIAW-TPDNS-AFAVGW---- 336 (1134)
Q Consensus 268 g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~-----~h~g~V~~l~f-SPDG~-~Lasg~---- 336 (1134)
+..+.+++.|+.+..+|.+ +|+.+........ ....++ +.= ..+|+ .++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~---------------TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e 179 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKN---------------TGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDE 179 (582)
T ss_dssp TTEEEEEETTTEEEEEESS---------------SCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGG
T ss_pred CCEEEEEeCCCEEEEEECC---------------CCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccc
Confidence 4567778889999999988 6666655432000 011121 110 01233 555554
Q ss_pred --CCCcEEEEecCCCeeEEEe
Q 001165 337 --KSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 337 --~Dg~I~vWdv~~~~l~~tl 355 (1134)
.+|.|.-+|..+++++-+.
T Consensus 180 ~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 180 FGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp GCCBCEEEEECTTTCCEEEEE
T ss_pred cCCCCEEEEEECCCCCEEeec
Confidence 3688999998887766554
No 291
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.27 E-value=12 Score=41.99 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=46.2
Q ss_pred CCeEEEEECCCCCEEEEe-eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECC-CCCEEEE
Q 001165 257 GDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTP-DNSAFAV 334 (1134)
Q Consensus 257 ~~~~~va~spdg~llAsG-~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSP-DG~~Las 334 (1134)
.-.+.++||||++.+.++ +..+.|..|+++....... .+.+ . ..+..-.++..+ +|+..++
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~------------~~~~-~----~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP------------LRVL-S----FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE------------EEEE-E----CSSEEEEEEECTTTCCEEEE
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec------------CEEE-e----CCCCCceEEEeCCCCcEEEE
Confidence 456789999999876655 4578999999974322110 0111 1 235567789999 5998876
Q ss_pred EECC-CcEEEEecC
Q 001165 335 GWKS-RGLTVWSVS 347 (1134)
Q Consensus 335 g~~D-g~I~vWdv~ 347 (1134)
+..+ +.|..|+..
T Consensus 284 ~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 284 CHPNGMRIFFYDAE 297 (355)
T ss_dssp EESCHHHHHSCCTT
T ss_pred ecCCceEEEEECCC
Confidence 6544 334444543
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.16 E-value=13 Score=42.94 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=75.4
Q ss_pred CCeEEEEECCC---CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEE
Q 001165 257 GDAVCASIAPE---QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFA 333 (1134)
Q Consensus 257 ~~~~~va~spd---g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~La 333 (1134)
.....++|+|+ +.+.++ ...+.|+.++.+ +++... +.+ .......|+|+|+|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~---------------~g~v~~-~~~----~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFV---------------NQYVDI-KTT----NIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETT---------------TTEEEE-ECC----CCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECC---------------CCEEEE-eec----CCCCccEEEECCCCCEEE
Confidence 34568999995 655554 333788888886 333322 111 334578999999999444
Q ss_pred EEECC----CcEEEEecCCCee-EEEeccCCCCceeeeEEcC-CCCCCcceEEEcc---eeEEEeCCCceE-EEEec-CC
Q 001165 334 VGWKS----RGLTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEE-GS 402 (1134)
Q Consensus 334 sg~~D----g~I~vWdv~~~~l-~~tl~~h~~~~V~sv~~sp-~~~~~~~~l~sgs---~i~~W~~~~~~l-~~~~~-~h 402 (1134)
+...+ ..+...+..++.. ...+.. ......++++| ++ ...++-. .+..+++.++.. ..... +.
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~~~~~~--~~~P~giavd~~~G----~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTERLSLCN--ARGAKTCAVHPQNG----KIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCEEEEEE--CSSBCCCEECTTTC----CEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred EcCCCCcccceEEEEECCCCeeccccccc--cCCCCEEEEeCCCC----eEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 44321 1233333322211 011211 23456778888 55 4444322 677888876654 22211 11
Q ss_pred Cc-c-EEEEec-CC-EEEeeecCCcEEeeee
Q 001165 403 SE-R-VLIFSF-GK-CCLNRGVSGMTYARQV 429 (1134)
Q Consensus 403 ~~-~-v~~~s~-~k-~l~S~s~d~ti~~w~l 429 (1134)
.. . -+++++ ++ ..++-...+.|..++.
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~ 302 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY 302 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 11 1 166666 55 3444444555555443
No 293
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.83 E-value=15 Score=41.17 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=32.6
Q ss_pred EEEeecCeEEEEEc-CCeEEEeecCCcce-eEEEeecChhhHHhhcceeEEEEcCC
Q 001165 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPD 78 (1134)
Q Consensus 25 v~fS~dg~llAs~s-~~~l~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSPD 78 (1134)
++|.|||++|++-. .++|++++.+.... .+...... .....+....++++||
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v--~~~g~~GllGia~~Pd 90 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV--SPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC--CCBTTBSEEEEEECTT
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce--eecCCCCceeeEeccc
Confidence 88999999998876 67888887642222 12111100 0112455688999996
No 294
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.48 E-value=0.54 Score=53.90 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=70.9
Q ss_pred EEEeecCeEEEEEcCCeEEEeecCCcc-----------eeEEEeecChhhHHhhcceeEEEEcCC---ceEEEEEeCCCE
Q 001165 25 IYFKVNNGLLLIASPCHIELWSSSQHK-----------VRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSSLY 90 (1134)
Q Consensus 25 v~fS~dg~llAs~s~~~l~IW~~~~~~-----------~~l~~~~r~~~sl~~~G~~~~v~wSPD---g~~Lav~t~dg~ 90 (1134)
+..||+|++||..++.+|.|-....+. .+.-.+...+........+.+|.|-|- |..|++-|+|++
T Consensus 71 lvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 71 VISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 558999999999999999987773121 011111111100001356899999885 458999999999
Q ss_pred EEEEEEEecC-cceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEe--cCCcEEEE
Q 001165 91 LHIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSI 157 (1134)
Q Consensus 91 l~lw~l~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t--~dg~v~~~ 157 (1134)
|++||+..+. ++...+.. .-.|.++... .+..-.||..++=.+++.+ .+|.|+.+
T Consensus 151 Ir~yDl~~s~~~P~~L~k~--------~~~fg~d~~~----~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 151 ITMFDILNSQEKPIVLNKP--------NNSFGLDARV----NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEETTCTTSCCEEESCC--------CSEEESCSSC----CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcccCCCCCcchhcc--------ccccCCCccc----ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999997532 22211100 0011111110 1222346666666788866 78998865
No 295
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.47 E-value=15 Score=40.29 Aligned_cols=159 Identities=9% Similarity=-0.002 Sum_probs=87.6
Q ss_pred ccEEEEEEcCCCCeEEEEEc-CCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~lwd~ 285 (1134)
.....++|++.++.+.++.. +++|+.++..+... .....+.. .+......+++.+. +++..+-..++.|.+++.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe---CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 34678999998777777654 47777776654110 00011110 11234568899874 455555566789999988
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE-CC-CcEEEEecCCCeeEEEeccCCCCce
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW-KS-RGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~-~D-g~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
+. .. ..++.. ........+++.|++..|..+. .. +.|...++.|... ..+........
T Consensus 107 ~g---------------~~-~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~~P 166 (316)
T 1ijq_A 107 KG---------------VK-RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWP 166 (316)
T ss_dssp TS---------------SS-EEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCE
T ss_pred CC---------------Cc-eEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCCCc
Confidence 62 11 111110 0234568899999666554444 33 6788888876432 23321123456
Q ss_pred eeeEEcCCCCCCcceEEE-cc--eeEEEeCCCc
Q 001165 364 SSPIVKPNQDCKYEPLMS-GT--SMMQWDEYGY 393 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~s-gs--~i~~W~~~~~ 393 (1134)
+.++++|++. ....+ .. .+...+.++.
T Consensus 167 ~gla~d~~~~---~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 167 NGITLDLLSG---RLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EEEEEETTTT---EEEEEETTTTEEEEEETTSC
T ss_pred eEEEEeccCC---EEEEEECCCCeEEEEecCCC
Confidence 7888887651 22222 22 6667777653
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.50 E-value=13 Score=39.95 Aligned_cols=66 Identities=18% Similarity=0.370 Sum_probs=40.3
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+++.++.||.++ .+ .||..+++|........... ........+.+++.+++........+.+|+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC-YVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc-ceeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 678888888653 46 99999999998765433321 11223334556666655433333566677653
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=91.46 E-value=26 Score=41.09 Aligned_cols=136 Identities=9% Similarity=-0.032 Sum_probs=70.6
Q ss_pred ccEEEEEEcCCCCeEEEE-EcCCeEEEEEeccCCcc-----ccceec-ccccC-------CCCCeE-EEEEC-------C
Q 001165 209 SAIIWLELCLPMRLLFVL-YSNGQLMSCSVSKKGLK-----LAEFIK-IDKEL-------GSGDAV-CASIA-------P 266 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~-~sDG~v~l~~~~~~~~~-----~~~~~~-~~~~~-------~~~~~~-~va~s-------p 266 (1134)
..-..|+|+|+++.+.++ +..++|+.++.+..... ...+.. ...+. ...... .+++. +
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~ 389 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE 389 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence 334689999999965554 45677777666432110 000000 00000 012344 45564 5
Q ss_pred CCCEEEEeeeCCeEEEEeccccccceeeeeee----------ccC--cceEEEEeecccCCCCcCeEEEEECCC-CCEEE
Q 001165 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY----------DWG--MREVYYTFCRYSMDDTGPVSCIAWTPD-NSAFA 333 (1134)
Q Consensus 267 dg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~----------~~~--~~~~l~~l~~~~~~h~g~V~~l~fSPD-G~~La 333 (1134)
+|.+.++=+.++.|+.++.+. ...++--. .+| .|.. .....-..-..|+++++ |...+
T Consensus 390 ~g~lyVaD~~N~rIr~i~~~G---~v~TiaG~g~~~~~~~~~~~G~~dG~~------~~~a~f~~P~gIavd~~~g~lyV 460 (496)
T 3kya_A 390 EYDFYFVDRLNFCVRKVTPEG---IVSTYAGRGASTSLADGNQWGTDDGDL------REVARFRDVSGLVYDDVKEMFYV 460 (496)
T ss_dssp CEEEEEEEGGGTEEEEECTTC---BEEEEEESCTTHHHHHSCSCCCCCEET------TTTCCCSSEEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCEEEEEeCCC---CEEEEecccccccccCccccccCCCCc------hhhhhcCCCcEEEEECCCCEEEE
Confidence 677777767788999988431 11111100 000 0000 00001123578999997 76666
Q ss_pred EEECCCcEEEEecCCCeeEE
Q 001165 334 VGWKSRGLTVWSVSGCRLMS 353 (1134)
Q Consensus 334 sg~~Dg~I~vWdv~~~~l~~ 353 (1134)
+=..++.|+.+++.+..+..
T Consensus 461 aD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 461 HDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EETTTTEEEEEEECCCC---
T ss_pred EeCCCCEEEEEECCCCcccc
Confidence 66677899999998765443
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=91.03 E-value=0.78 Score=56.98 Aligned_cols=122 Identities=5% Similarity=-0.083 Sum_probs=64.6
Q ss_pred EEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEecccc
Q 001165 212 IWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 212 ~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~~~ 288 (1134)
..|+++|.++.+.++.. .++|+.+++++..... +.. ........++|+|+++ +..+-+..+.|.+++++..
T Consensus 499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~---l~~---~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE---ESC---SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE---EEe---CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 45677887666555542 2566554443321111 100 0123455799999755 5555556778999988621
Q ss_pred ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 289 ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 289 ~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
..+++. . .....+....|++..+ ..+.+.+..+.|..++..++..+.++..
T Consensus 573 --~~~~~~-----------~----~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 573 --NRKTIL-----------E----DEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp --CCEEEC-----------C----CSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred --ceEEEE-----------e----cCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 111110 0 0001112233445443 4555667778999999887777766643
No 299
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.44 E-value=4.9 Score=45.11 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC----CCEEEEeee-------CC
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE----QQILAVGTR-------RG 278 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd----g~llAsG~~-------dg 278 (1134)
....|+|.|+++.+.++..+|+|++++.++...............+......++|+|+ +.+.++-+. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 4578999999984445667899988764321110011110000012345678999995 555554333 22
Q ss_pred eEEEEeccccccceeeeeeeccCcceEEE-Eeec-ccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 279 VVELYDLAESASLIRTVSLYDWGMREVYY-TFCR-YSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 279 ~V~lwd~~~~~~~~~~l~l~~~~~~~~l~-~l~~-~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
.|..|+++........ .+.+. .+.. ....|.+ ..|+|.|||.+.++-++
T Consensus 99 ~v~r~~~~~~~~~~~~--------~~~i~~~~p~~~~~~h~~--~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTD--------FRTVFRQMPKLSTGNHFG--GRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEECTTSSBEEE--------EEEEEECSSCCBSSSCCC--CCEEECSSSEEEEEECC
T ss_pred EEEEEEECCCCCCCCc--------eEEEEEECCCCCCCcccC--ccEEECCCCcEEEEECC
Confidence 4555555432111100 01110 1100 0112433 56999999976666544
No 300
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=90.09 E-value=19 Score=38.73 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=40.8
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+++.++.||.++ .+ .||..++.|........... ........+.++|++++........+.+|+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV-TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS-CCEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc-ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 777888887643 46 89999999998865443322 12222334556677766544344566777663
No 301
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=89.97 E-value=30 Score=39.27 Aligned_cols=123 Identities=4% Similarity=-0.122 Sum_probs=70.4
Q ss_pred cEEEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe-eeCCeEEEEecc
Q 001165 210 AIIWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG-TRRGVVELYDLA 286 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG-~~dg~V~lwd~~ 286 (1134)
....|+++|.++.+.++.. .++|...+.++..... +.. .+......++++|+++.|-.+ +..+.|..++++
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~---~~~---~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE---EEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE---EEE---CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 3578899998877777653 3567666654422211 110 122456789999876655554 456789999887
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEec
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
.. ..+++. . ..........|+. ..+..+.+-+..+.|..+|..++....++.
T Consensus 277 G~--~~~~~~-----------~----~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 277 GG--NRKTIL-----------E----DEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp SC--CCEEEE-----------E----CSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CC--ccEEEE-----------e----CCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 21 111110 0 0012233456666 344566666777889888866665555543
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.92 E-value=18 Score=38.91 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=40.4
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+++.++.||.++ .+ .||..++.|........... ........+.+++++++........+.+|+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-cCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 788888888754 56 99999999998765443321 11122334556666655433334557777663
No 303
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=89.74 E-value=49 Score=41.33 Aligned_cols=122 Identities=4% Similarity=-0.114 Sum_probs=65.5
Q ss_pred cEEEEEEcCCCCeEEEEEcC--CeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEe-eeCCeEEEEecc
Q 001165 210 AIIWLELCLPMRLLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVG-TRRGVVELYDLA 286 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sD--G~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG-~~dg~V~lwd~~ 286 (1134)
....|+++|..+.+.|+... ++|...++++..... +.. .+......+++.+.+..|-.+ ...+.|..++++
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~---lv~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE---EEe---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 46789999987777776532 566666554322111 110 122467789999766555444 456788888886
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
... .+++ +.+ .........|+... ++...+-+..+.|...+..++..+.++
T Consensus 589 G~~--~~~v-------------~~~--~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 589 GGN--RKTI-------------LED--EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SCS--CEEE-------------EEC--TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCc--eEEE-------------ecC--CCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 211 1111 000 00122234566532 244444456677777776666544444
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=89.58 E-value=44 Score=40.56 Aligned_cols=201 Identities=8% Similarity=0.047 Sum_probs=105.5
Q ss_pred ccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCC-EEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~-llAsG~~dg~V~lwd~~ 286 (1134)
..+..|+|++..+.+.++. .+++|..++.++.... .+.. .+...+..+|+.+.++ +..+-...+.|.+.+++
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---~v~~---~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d 110 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---HVVE---FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD 110 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---EEEe---CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC
Confidence 3467899999887777765 4577777666543211 1111 1223456788887644 55555567889998887
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCC-CCEEEEEEC-CCcEEEEecCCCeeEEEeccCCCCcee
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPD-NSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSIS 364 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPD-G~~Lasg~~-Dg~I~vWdv~~~~l~~tl~~h~~~~V~ 364 (1134)
... .+ .+.. ..-.....|++.|. |....+-+. .+.|...++.|........+ ....+
T Consensus 111 G~~--~~--------------~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~--~~~P~ 169 (628)
T 4a0p_A 111 GQH--RQ--------------VLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN--VGRAN 169 (628)
T ss_dssp STT--CE--------------EEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--CSSEE
T ss_pred CCc--EE--------------EEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC--CCCcc
Confidence 211 11 1100 02234689999995 544444433 46788888877543333332 44678
Q ss_pred eeEEcCCCCCCcce-EEEcc--eeEEEeCCCceEEEEecCCCccE-EEEecCCEEEeeecCCcEEeeeeeeCCCeEEEe
Q 001165 365 SPIVKPNQDCKYEP-LMSGT--SMMQWDEYGYRLYAIEEGSSERV-LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVV 439 (1134)
Q Consensus 365 sv~~sp~~~~~~~~-l~sgs--~i~~W~~~~~~l~~~~~~h~~~v-~~~s~~k~l~S~s~d~ti~~w~l~~~~~~l~l~ 439 (1134)
.+++++++. .. ++-.. .+...+..+.........-..+. +++.-++...|-...+.|...+..++.....+.
T Consensus 170 GlalD~~~~---~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 170 GLTIDYAKR---RLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EEEEETTTT---EEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eEEEccccC---EEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 889988651 22 22222 66667766543221111111111 222114444444445555555544454443333
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=89.56 E-value=44 Score=40.54 Aligned_cols=120 Identities=10% Similarity=0.042 Sum_probs=71.2
Q ss_pred cEEEEEEcCCCCeEEEEEc--CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEE-eeeCCeEEEEecc
Q 001165 210 AIIWLELCLPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAV-GTRRGVVELYDLA 286 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~s--DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAs-G~~dg~V~lwd~~ 286 (1134)
...+|+++|..+.+.+... .++|...+.++..... +. .+......++++++++.|-. =...+.|..++++
T Consensus 124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~---l~----~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT---LV----PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EE----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE---EE----CCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 3578999998777777652 4566665554432211 11 12356789999997655444 4456789999887
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEecc
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 357 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl~~ 357 (1134)
.... + .+.. .......|++.. ++...+-+..+.|...|..++.....+..
T Consensus 197 G~~~-------------~---v~~~----~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 197 GLNR-------------E---VIAD----DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp SCSC-------------E---EEEE----CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCce-------------E---Eeec----cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 2111 1 1111 222345677654 55566666778999999766655555543
No 306
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.54 E-value=6.3 Score=45.98 Aligned_cols=118 Identities=12% Similarity=0.088 Sum_probs=59.2
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceeccccc---CCCCCeEEEEECCC----CCEEEEeee-----
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPE----QQILAVGTR----- 276 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~va~spd----g~llAsG~~----- 276 (1134)
.....|+|.|+|+++++-...|++++++...........+.. .. .+......++|+|+ +.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345789999999876665444578776543221111111110 00 02356678999995 444444332
Q ss_pred -------CCeEEEEeccccccceeeeeeeccCcceEEE-EeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 277 -------RGVVELYDLAESASLIRTVSLYDWGMREVYY-TFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 277 -------dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~-~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
...|.-|+.++...... ..+.+. .+.. ...| ....|+|.|||++.++.++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~--------~~~~i~~~~p~-~~~H--~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLE--------KPVDLLAGLPS-SKDH--QSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEE--------EEEEEEEEECC-CSSC--CEEEEEECTTSCEEEEECCT
T ss_pred CccccccccEEEEEEECCCCCCcC--------CcEEEEEcCCC-CCCC--CCCeEeECCCCeEEEEECCC
Confidence 12344444432111100 111111 1111 1124 36889999999977776543
No 307
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=88.97 E-value=8.9 Score=42.95 Aligned_cols=122 Identities=13% Similarity=0.038 Sum_probs=61.4
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCC----CCEEEEee--eCCeEEE
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPE----QQILAVGT--RRGVVEL 282 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spd----g~llAsG~--~dg~V~l 282 (1134)
.....|+|.|+++++++-...|+|++++...........+......+......++|+|+ +.+.++=+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 34578999999987666544899988764322211111111000112356789999996 44444322 3344544
Q ss_pred EeccccccceeeeeeeccCcceEE-EEeecccCCCCcCeEEEEECCCCCEEEEEECC
Q 001165 283 YDLAESASLIRTVSLYDWGMREVY-YTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKS 338 (1134)
Q Consensus 283 wd~~~~~~~~~~l~l~~~~~~~~l-~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~D 338 (1134)
|.++........+. ..+.+ ..+. ....|.+ ..|+|.|||.+.++.++.
T Consensus 112 ~~~~~~~~~~~~~~-----~~~~i~~~~p-~~~~H~g--~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 112 MLYDEKKPSGEQLG-----APDTVFRGIP-KGVIHNG--GRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp EEBCTTSCTTCCBC-----CCEEEEEEEC-CCSSCCC--CCEEECTTSCEEEECBCT
T ss_pred EEeCCCCcccccCC-----CcEEEEEcCC-CCCCccC--ccccCCCCCCEEEEECCC
Confidence 55543110000000 11111 1121 1123543 579999999977776543
No 308
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=88.22 E-value=10 Score=45.67 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.3
Q ss_pred CCCC---EEEEeeeCCeEEEEeccc
Q 001165 266 PEQQ---ILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 266 pdg~---llAsG~~dg~V~lwd~~~ 287 (1134)
.+|+ .++.++.+|.+.++|.++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTT
T ss_pred CCCCEEEEEEEECCCceEEEEECCC
Confidence 5674 788899999999999873
No 309
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=87.86 E-value=15 Score=44.44 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=25.1
Q ss_pred EEECCCCCE----EEEEECCCcEEEEecCCCeeEEEec
Q 001165 323 IAWTPDNSA----FAVGWKSRGLTVWSVSGCRLMSTIR 356 (1134)
Q Consensus 323 l~fSPDG~~----Lasg~~Dg~I~vWdv~~~~l~~tl~ 356 (1134)
++.+|++.. +++++.|+.+..+|..+++.+-...
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~ 148 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVE 148 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeec
Confidence 455554544 8888889999999998887765543
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=87.47 E-value=6.8 Score=44.94 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=67.4
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCC-ccc-------cc--eecccccC--CCCCeEEEEECCC---CCEEEEe
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKL-------AE--FIKIDKEL--GSGDAVCASIAPE---QQILAVG 274 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~-~~~-------~~--~~~~~~~~--~~~~~~~va~spd---g~llAsG 274 (1134)
.|..+..||+|+++|+.+. ..+.+..+.... ... .+ ........ ....+..+.|+|- +..|++=
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 4566899999999999864 467777776211 100 00 11100000 1357899999995 4578888
Q ss_pred eeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE
Q 001165 275 TRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 275 ~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg 335 (1134)
..|++||+||+.........+... .+ .+ +. ..+...|.+++|+++|-.|-..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~---~~----~f-g~-d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKP---NN----SF-GL-DARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCC---CS----EE-ES-CSSCCCEEEEEECTTSSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhcc---cc----cc-CC-CcccceEEEEEEcCCCcEEEEE
Confidence 999999999998532111122100 00 11 01 1133578899999866544443
No 311
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=87.43 E-value=41 Score=37.56 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=70.4
Q ss_pred CCeEEEEE--CCC-CC-EEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEE
Q 001165 257 GDAVCASI--APE-QQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAF 332 (1134)
Q Consensus 257 ~~~~~va~--spd-g~-llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~L 332 (1134)
..+..+++ +|+ ++ ++.+...+|.+..|++.+...... +++.++++.. .+.+..+...+....|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~--------~~~lVR~f~l-----gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI--------SGKKVRAFKM-----NSQTEGMAADDEYGRL 194 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE--------EEEEEEEEEC-----SSCEEEEEEETTTTEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc--------cceEEEEecC-----CCCcceEEEcCCCCeE
Confidence 34444555 774 44 466677789999999964321100 3455666553 3568888999999999
Q ss_pred EEEECCCcEEEEecC-----CCeeEEEeccCC-CCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 333 AVGWKSRGLTVWSVS-----GCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 333 asg~~Dg~I~vWdv~-----~~~l~~tl~~h~-~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
..+-+|.+|..++.. +++++..+...+ ...+..+++.+..+.+.-.++|+- +..+|+.+
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999999776555643 245555553211 225666666433211112333321 55566654
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=87.31 E-value=21 Score=39.61 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=85.2
Q ss_pred EEEECCC-CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEE-Eeeccc--CCCCcCeEEEEE---CCCCCEEE
Q 001165 261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYY-TFCRYS--MDDTGPVSCIAW---TPDNSAFA 333 (1134)
Q Consensus 261 ~va~spd-g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~-~l~~~~--~~h~g~V~~l~f---SPDG~~La 333 (1134)
|++|.++ ++++++...+|+|..|+.++. .... .+.+.. -.....+..|.| .|+|++++
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---------------~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---------------SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTC---------------CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCC---------------eEEEEecCCccccCCCcceeeEEEEeccCCCCcEEE
Confidence 6888774 555555557999999998721 1111 111000 001123578999 69988888
Q ss_pred EEEC-------------CCcEEEEecC---CCeeEEEec--cC----------CCCceeeeEEcCCCCCCcceEEEcc--
Q 001165 334 VGWK-------------SRGLTVWSVS---GCRLMSTIR--QI----------SLSSISSPIVKPNQDCKYEPLMSGT-- 383 (1134)
Q Consensus 334 sg~~-------------Dg~I~vWdv~---~~~l~~tl~--~h----------~~~~V~sv~~sp~~~~~~~~l~sgs-- 383 (1134)
+... ++.+..+|+. +++.+.... .. .....+.++..++| +..++++
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G----naYVt~s~~ 157 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG----NSYVAFALG 157 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS----CEEEEEEES
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC----CEEEeCCCC
Confidence 6542 5779999998 555443332 11 11247888998888 6666443
Q ss_pred --eeEEEeCCCceEEEEecCC---Ccc----EEEEec-CCEEEeeecCCcEEeeeee
Q 001165 384 --SMMQWDEYGYRLYAIEEGS---SER----VLIFSF-GKCCLNRGVSGMTYARQVI 430 (1134)
Q Consensus 384 --~i~~W~~~~~~l~~~~~~h---~~~----v~~~s~-~k~l~S~s~d~ti~~w~l~ 430 (1134)
.|...++.+..+....... ... =+++.+ ++.++....++.+...|+.
T Consensus 158 ~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 158 MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 4556666665332211111 111 156666 6666555447777666654
No 313
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.90 E-value=25 Score=38.33 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=34.0
Q ss_pred EEcCCCCeEEEEE--cCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeee-CCeEEEEecc
Q 001165 215 ELCLPMRLLFVLY--SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-RGVVELYDLA 286 (1134)
Q Consensus 215 ~fsp~~~~la~~~--sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~-dg~V~lwd~~ 286 (1134)
.++++++.+++.. .++.-.++.+...... .+.+.. ..+ .+++|+++.|.-.+. ..+|.+-+++
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~------~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKN------HYL--FTCNTSDRYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEES------SCC--CCSEEETTEEEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeC------CCc--eEeeEECCEEEEEeCCCceEEEEECC
Confidence 6788899888876 3444444444322111 111111 112 457888888886554 4556665555
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=86.87 E-value=32 Score=37.07 Aligned_cols=66 Identities=15% Similarity=0.272 Sum_probs=39.8
Q ss_pred CCCEEEEEeCC-----CeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 473 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 473 dG~~LAsgg~d-----G~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+++.++.||.+ ..+ .||..++.|........... ........+.++|++++........+.+|+.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS-ALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc-ceEEEEECCEEEEEcCcCCCcccceEEEEcCC
Confidence 77888888865 346 99999999998765433221 11122234556666655443334566677663
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.76 E-value=52 Score=38.10 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=35.9
Q ss_pred cee-EEEeecCeEEEEEcCC-eEEEeecCCcceeEEEeecChhhH---HhhcceeEEEEcCC---ceEEEEEe
Q 001165 22 QQI-IYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESV---QREGENLQAVWSPD---TKLIAVVT 86 (1134)
Q Consensus 22 ~~i-v~fS~dg~llAs~s~~-~l~IW~~~~~~~~l~~~~r~~~sl---~~~G~~~~v~wSPD---g~~Lav~t 86 (1134)
.+. ++|.|||+++++-..+ .|.+++....... ......+.+ ...+....++|+|| +..|.++.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 344 8899999999887665 6887765322221 111111111 12345678999995 55554443
No 316
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.69 E-value=40 Score=36.72 Aligned_cols=62 Identities=8% Similarity=0.054 Sum_probs=32.5
Q ss_pred EEcCCCCeEEEEEc-CCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 215 ELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 215 ~fsp~~~~la~~~s-DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
.++|+++.+.+... ..+++..++++.... .+. .+. ....++|+++.|+-...++.-+|+.++
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l~------~~~-~~~~~~P~g~~iy~t~~~~~~~I~~~~ 213 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LFY------DCN-CYKPVVLDDTNVYYMDVNRDNAIVHVN 213 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEE---EEE------CSC-EEEEEEEETTEEEEEEGGGTTEEEEEC
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEE---EEe------CCC-ccceeeecCCEEEEEEcCCCcEEEEEE
Confidence 45777887777755 345665554432211 111 011 223466999988876544323444444
No 317
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=86.47 E-value=25 Score=38.88 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=51.7
Q ss_pred CeEEEEECCCCCEEEEeeeC-CeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 258 DAVCASIAPEQQILAVGTRR-GVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~d-g~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
.+..+++.++|+..++++.. +.|...+.+. .....+.+ +. ......-..+.|+++|||+.|++..
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG--~~~~~~~~-~~-----------~~~~~~~G~nGIv~~pdg~~Liv~~ 203 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSADG--KTVSTFAW-ES-----------GNGGQRPGYSGITFDPHSNKLIAFG 203 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTTS--CCEEEEEE-CC-----------CCSSSCCSCSEEEEETTTTEEEEES
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCCC--CEEeeeee-cC-----------CCcccccCcceEEEeCCCCEEEEEc
Confidence 46789999999999999988 8866666552 11111110 00 0001223467899999999998887
Q ss_pred CCCcEEEEecCC
Q 001165 337 KSRGLTVWSVSG 348 (1134)
Q Consensus 337 ~Dg~I~vWdv~~ 348 (1134)
..|.+..+|+..
T Consensus 204 ~~g~L~~fD~~~ 215 (334)
T 2p9w_A 204 GPRALTAFDVSK 215 (334)
T ss_dssp SSSSEEEEECSS
T ss_pred CCCeEEEEcCCC
Confidence 789999999873
No 318
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.33 E-value=11 Score=39.35 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc----cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL----AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
.+.+++|+|++.+.++ ++|.++-.+........ ...+-...|. .-.++.|.|+|.+.|+ .||.|.-++-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~---~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN---QFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG---GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc---cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 4569999999987777 78876554432211100 0011000111 1247899999999998 6787765554
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEE
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 342 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~ 342 (1134)
.+..... -+. .+..+.. .-=+.+..|.|.|||..-|+. |+.+.
T Consensus 115 P~~~~~~-Wl~-----~a~~vg~------~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 115 PQSDTDN-WIA-----RATEVGS------GGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CCSTTCC-HHH-----HSEEEEC------SSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CcCCCCc-eec-----cccEecc------CCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2211100 000 0111100 011468999999999988888 56543
No 319
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=85.20 E-value=3 Score=51.63 Aligned_cols=160 Identities=10% Similarity=0.048 Sum_probs=83.4
Q ss_pred ccEEEEEEcCCCCeEEEEE-cCCeEEEEEeccCCc-cccceecccccCCCCCeEEEEECCC-CCEEEEeeeCCeEEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPE-QQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~-sDG~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~va~spd-g~llAsG~~dg~V~lwd~ 285 (1134)
..+..|+|++..+.+.++. .+++|+.+++.+... .....+.. .+......+++.+. ++++++-..++.|.++++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---SCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---CCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 3456788888777777664 346777766653110 00000000 01123456888854 455555556778888887
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEE-ECC-CcEEEEecCCCeeEEEeccCCCCce
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVG-WKS-RGLTVWSVSGCRLMSTIRQISLSSI 363 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg-~~D-g~I~vWdv~~~~l~~tl~~h~~~~V 363 (1134)
+. .. ..++.. ........|++.|++..|..+ +.. +.|.+.++.+.... .+........
T Consensus 483 dg---------------~~-~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~l~~P 542 (699)
T 1n7d_A 483 KG---------------VK-RKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWP 542 (699)
T ss_dssp SS---------------CC-EEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCSSCSSC
T ss_pred CC---------------Cc-eEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeCCCCCc
Confidence 62 11 111110 012334678899976555443 333 67888887664322 2211113345
Q ss_pred eeeEEcCCCCCCcceEEE-cc--eeEEEeCCCce
Q 001165 364 SSPIVKPNQDCKYEPLMS-GT--SMMQWDEYGYR 394 (1134)
Q Consensus 364 ~sv~~sp~~~~~~~~l~s-gs--~i~~W~~~~~~ 394 (1134)
+.++++|++. ....+ .. +|..++..+..
T Consensus 543 nGlavd~~~~---~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 543 NGITLDLLSG---RLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp CCEEECTTTC---CEEEEETTTTEEEEECSSSSC
T ss_pred cEEEEeccCC---EEEEEecCCCeEEEEccCCCc
Confidence 6788888751 22222 22 66777776543
No 320
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=84.25 E-value=57 Score=36.36 Aligned_cols=131 Identities=6% Similarity=0.008 Sum_probs=74.7
Q ss_pred EEEEEE--cCCCC--eEEEEEcCCeEEEEEeccCCc--cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 211 IIWLEL--CLPMR--LLFVLYSNGQLMSCSVSKKGL--KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 211 V~~i~f--sp~~~--~la~~~sDG~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
+..+++ +|..+ ++++...+|++..|.+..... ...+.+... .-...+-.+++.+....|-+|-.+..|..|+
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f--~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF--KMNSQTEGMAADDEYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE--ECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe--cCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence 444555 77544 466667789888887743211 111111111 1124677788888888888888886666666
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCC-cCeEEEEE--CCCCC-EEEEEE-CCCcEEEEecC-CCeeEEEec
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDT-GPVSCIAW--TPDNS-AFAVGW-KSRGLTVWSVS-GCRLMSTIR 356 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~-g~V~~l~f--SPDG~-~Lasg~-~Dg~I~vWdv~-~~~l~~tl~ 356 (1134)
.+..+... ++.+..+.+ ++- ..+..|+. .++|+ +|++++ .+.+..|||.. ..+.+.++.
T Consensus 208 a~p~~~~~----------~~~v~~~~~---g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 208 AEPDGGSN----------GTVIDRADG---RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp CSTTSCSC----------CEEEEEBSS---SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CCcCCCCC----------ceEEEEecC---CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 44332221 222222211 132 35777877 56666 566655 56799999996 455555554
No 321
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=84.20 E-value=40 Score=37.67 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCeEEEE------------EcCCeEEEEEeccCCccccceecccc--cC-CCCCeEEEEECC--CCC--EE
Q 001165 211 IIWLELCLPMRLLFVL------------YSNGQLMSCSVSKKGLKLAEFIKIDK--EL-GSGDAVCASIAP--EQQ--IL 271 (1134)
Q Consensus 211 V~~i~fsp~~~~la~~------------~sDG~v~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~va~sp--dg~--ll 271 (1134)
.-+|+..|+|..+.+. ..+|.+++++.+...... ..+.... +. .......+.+.+ ++. ++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 3456677776554443 268999998876432211 1111000 00 112445566544 343 55
Q ss_pred EEeee--CCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEE
Q 001165 272 AVGTR--RGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGW 336 (1134)
Q Consensus 272 AsG~~--dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~ 336 (1134)
++-.. +++|.+|+++..+... ..+.++.+ ..-...+.+.+.|+|++.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~-----------~~~~~~~g---~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSL-----------LHLKTIRH---KLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEE-----------EEEEEECC---TTCSSEEEEEEEETTEEEEEES
T ss_pred EEECCCCCCeEEEEEEECCCCEE-----------EEEecccc---CCCCCCceEEEeCCCCEEecCC
Confidence 55443 5788898887432211 11222222 1234678999999999888764
No 322
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=78.74 E-value=3.1 Score=41.80 Aligned_cols=57 Identities=14% Similarity=0.001 Sum_probs=47.5
Q ss_pred cCChHHHHHHHHhcCcHHHHHhHHhhhhhccCchhhHHHHHHHHHHHhccchHhHHHHHHHhhh
Q 001165 874 AGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLL 937 (1134)
Q Consensus 874 ~g~P~~Lf~~cl~~~~l~taa~yLivl~n~e~~~~~~~~a~~Ll~~al~~~~w~l~~eL~RFl~ 937 (1134)
+-+|..=|+.+|+.|+++.|..++.-+ .+..+|.+|.+.||.+++.++|.+-.+=++
T Consensus 5 ~~D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 5 VQDPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 456777799999999999999997654 347899999999999999999988654433
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=78.23 E-value=74 Score=33.76 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeC
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFG 499 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~ 499 (1134)
+|+.++.||.++ .+ .||..+++|+...
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence 788888888763 46 8999999998754
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.67 E-value=19 Score=37.49 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=56.5
Q ss_pred CeEEEEEcCCeEEEEEeccCCc--cccc--eecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeee
Q 001165 221 RLLFVLYSNGQLMSCSVSKKGL--KLAE--FIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1134)
Q Consensus 221 ~~la~~~sDG~v~l~~~~~~~~--~~~~--~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~ 296 (1134)
.++.++.+| +++.=....... .... .+-...| ..++.++|+|+|.+.|+ .+|. ||..+..+......-
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw---~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~ 76 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGW---SNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWM 76 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSC---TTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHH
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCcccc---ccceeEEECCCccEEEE--eCCe--EEEECCCCCCccccc
Confidence 356777777 776543332221 1001 1111112 35669999999999998 7776 555553221000000
Q ss_pred eeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEec
Q 001165 297 LYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 346 (1134)
Q Consensus 297 l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv 346 (1134)
++...+ + ..+-.+ -.++.|.|+|.+-++ .||.|.-|+-
T Consensus 77 ----~s~t~I----G-~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 77 ----GRAKKI----G-NGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp ----HHCEEE----E-CSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ----ccccEe----c-cccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 000000 0 000112 478999999999888 5588877775
No 325
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=75.79 E-value=38 Score=39.39 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCC-eEEEEEcCCeEEEEEeccCCc-cccceecccccC------CCCCeEEEEECCC----CCEEEEeeeC
Q 001165 210 AIIWLELCLPMR-LLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKEL------GSGDAVCASIAPE----QQILAVGTRR 277 (1134)
Q Consensus 210 ~V~~i~fsp~~~-~la~~~sDG~v~l~~~~~~~~-~~~~~~~~~~~~------~~~~~~~va~spd----g~llAsG~~d 277 (1134)
.-..|+|.|++. .+.++...|+|++++.++... .....+.. .+. +......++|+|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~-~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHK-LVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTT-TBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcc-eeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 346899999996 566677899999886432211 11111111 011 1345678999997 4444443321
Q ss_pred C------------eEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCC
Q 001165 278 G------------VVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSR 339 (1134)
Q Consensus 278 g------------~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg 339 (1134)
. .|.-|.+.+..... .. ..+.+.+..+......|. -..|+|.|||++.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~--~d---~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQ--VD---LRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTS--BC---GGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCc--cC---CCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCCC
Confidence 1 23335544210000 00 001222222221112354 47899999999777766643
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=74.95 E-value=1.3e+02 Score=34.74 Aligned_cols=206 Identities=11% Similarity=0.103 Sum_probs=106.2
Q ss_pred CeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe---CC----CEEEEEEEEecCcce
Q 001165 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT---SS----LYLHIFKVQITEKSI 103 (1134)
Q Consensus 31 g~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t---~d----g~l~lw~l~~~~~~~ 103 (1134)
.+.|+.++++.|+-|+......|.--+.|+..- . .-.+..-.-+||.+.++..+ .+ |.+.+|.++.....
T Consensus 116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L-~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ- 192 (494)
T 1bpo_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL-A-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ- 192 (494)
T ss_dssp TTEEEEECSSEEEEEESSSSCCCEEEEECCGGG-T-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-
T ss_pred CCeEEEEcCCeeEEecccCCCCchhheecchhc-c-cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-
Confidence 346889999999999997555566666776543 2 23456677789998766432 23 56678877543211
Q ss_pred ecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCc--cccceeccccCCCcccccc
Q 001165 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE--FYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 104 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~--~~~~~~~~~~~~~~~~i~~ 181 (1134)
...+|- -.-..+..++ ......+.||+..+. ..+.++++..+.. ....+ ..+...
T Consensus 193 ~ieGha-----a~F~~~~~~g----~~~~~~lf~fa~r~~------~g~kLhi~Ei~~~~~~~~~f--------~kk~vd 249 (494)
T 1bpo_A 193 PIEGHA-----ASFAQFKMEG----NAEESTLFCFAVRGQ------AGGKLHIIEVGTPPTGNQPF--------PKKAVD 249 (494)
T ss_dssp EECCSE-----EEEEEEECTT----CSSEEEEEEEEECST------TCCEEEEEECSCCCTTCCCC--------CCEEEE
T ss_pred hheeee-----eeeEEEecCC----CCCCceEEEEEEecC------CCcEEEEEEcCCCccCCCCc--------cceeee
Confidence 111221 1111111111 011122444443221 1256666655432 11111 011122
Q ss_pred ccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEE
Q 001165 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC 261 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1134)
++|.++. ....-.+|..|+.-+.+.+++.-|-++++++.....--...+. .+.+..
T Consensus 250 v~fppe~------------------~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs------~~~iF~ 305 (494)
T 1bpo_A 250 VFFPPEA------------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------GETIFV 305 (494)
T ss_dssp CCCCTTS------------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEE
T ss_pred eeCCccc------------------ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc------CCceEE
Confidence 2232211 1223357888999999999999999999988654432222221 234443
Q ss_pred EEEC-CCCCEEEEeeeCCeEEEEeccc
Q 001165 262 ASIA-PEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 262 va~s-pdg~llAsG~~dg~V~lwd~~~ 287 (1134)
.+-+ +.+..+++ ...|.|.--.+++
T Consensus 306 t~~~~~~~Gi~~V-nr~GqVl~v~v~e 331 (494)
T 1bpo_A 306 TAPHEATAGIIGV-NRKGQVLSVCVEE 331 (494)
T ss_dssp EEEETTTTEEEEE-ETTCEEEEEEECT
T ss_pred ecccCCCCcEEEE-ccCceEEEEEEcc
Confidence 3333 33444444 3667666666654
No 327
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=69.27 E-value=1.8e+02 Score=34.02 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCeEEEEECCC--CCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEE-------CC
Q 001165 257 GDAVCASIAPE--QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW-------TP 327 (1134)
Q Consensus 257 ~~~~~va~spd--g~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f-------SP 327 (1134)
.....++|.|+ ++++++-...+.|++.|.+ .++.. ++.............|+| ++
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~---------------~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~ 202 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLK---------------NRMLS-SPLNINTIPTNRIRSIAFNKKIEGYAD 202 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETT---------------TTEEE-EEECCTTSSCSBEEEEEECCCBTTTBC
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECC---------------CCEEE-EEEccCccccCCCcEEEEeecccccCC
Confidence 35678999983 5555554444678888876 22222 221110012235789999 99
Q ss_pred CCCEEEEEECCC-c------EEEEecCC-CeeE-----EEeccCCCCceeeeEEcCCCCCCcceEEEcc---eeEEEeCC
Q 001165 328 DNSAFAVGWKSR-G------LTVWSVSG-CRLM-----STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 391 (1134)
Q Consensus 328 DG~~Lasg~~Dg-~------I~vWdv~~-~~l~-----~tl~~h~~~~V~sv~~sp~~~~~~~~l~sgs---~i~~W~~~ 391 (1134)
+|+.|.++...+ . |.+.+... +... .++.. ......++++|++. ..+++-. .+..+++.
T Consensus 203 ~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g---~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 203 EAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPING---ELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTC---CEEEEETTTTEEEEECHH
T ss_pred CCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCC---eEEEEECCCCEEEEEecc
Confidence 999666665543 2 55665333 1111 22221 11345677888541 3344322 67788876
No 328
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=68.44 E-value=3.3 Score=34.12 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=34.1
Q ss_pred HHHHHhhhhHHH-HHhccCHHHHHHHHHhhccchhHHhHHHH
Q 001165 1077 LATLLRRSEVLF-DLFRHDMRLWEAYAITLQSYPAFAEYHDL 1117 (1134)
Q Consensus 1077 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1117 (1134)
+|+.-.+-+-|+ ...+.-..+|..=|+-|++||.|.+|-.|
T Consensus 8 l~satd~~e~LIr~~Vtd~~~~W~~~skkL~~~pE~~~yv~L 49 (69)
T 2k85_A 8 IATAKDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQDYVYL 49 (69)
T ss_dssp TTHHHHHHHHHHHHHCSSSCSCHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCccHHHHHHH
Confidence 455666677777 77888899999999999999999999754
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=67.50 E-value=1.3e+02 Score=31.82 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeC
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFG 499 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~ 499 (1134)
+|+.++.||.++ .+ .||..++.|....
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 788888888764 36 9999999999875
No 330
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=66.97 E-value=1.6e+02 Score=32.61 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=103.8
Q ss_pred CeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe---CC----CEEEEEEEEecCcce
Q 001165 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT---SS----LYLHIFKVQITEKSI 103 (1134)
Q Consensus 31 g~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t---~d----g~l~lw~l~~~~~~~ 103 (1134)
.+.||.++++.|+-|+......|.--+.|...- . .-.+..-.-+||.+.++..+ .+ |.+.||.++.... .
T Consensus 117 ~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L-~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q 193 (365)
T 2xzh_A 117 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL-A-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-Q 193 (365)
T ss_dssp SSEEEEEESSEEEEEESSTTCCCEEEEECCGGG-T-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-E
T ss_pred CCeEEEEcCCcEEEEcccCCCCCceeeecchhc-c-cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-c
Confidence 346888999999999997555566666776542 2 23456677788888765543 23 5567777754211 1
Q ss_pred ecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCc--cccceeccccCCCcccccc
Q 001165 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE--FYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 104 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~--~~~~~~~~~~~~~~~~i~~ 181 (1134)
...+|- -.-..+...+ ......+.||+..+. ..+.++++..+.. ....+ ..+.-.
T Consensus 194 ~ieGha-----a~F~~~~~~g----~~~~~~lf~fa~r~~------~g~kLhIiEi~~~~~~~~~f--------~kk~vd 250 (365)
T 2xzh_A 194 PIEGHA-----ASFAQFKMEG----NAEESTLFCFAVRGQ------AGGKLHIIEVGTPPTGNQPF--------PKKAVD 250 (365)
T ss_dssp EECCSE-----EEEEEECCTT----CSSCEEEEEEEEEET------TEEEEEEEECSSCCTTCCCC--------CCEEEE
T ss_pred eeeeee-----eeeEEEecCC----CCCCceEEEEEEecC------CCcEEEEEEcCCCCCCCCCc--------ccccce
Confidence 111121 0011111111 111122334432211 1246666655322 11111 011112
Q ss_pred ccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEE
Q 001165 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC 261 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1134)
++|..+ .....-.+|..|+.-+.+.+.+.-|-++++++.....--...+. .+.+..
T Consensus 251 i~fppe------------------a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS------~d~iF~ 306 (365)
T 2xzh_A 251 VFFPPE------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------GETIFV 306 (365)
T ss_dssp ECCCTT------------------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEE
T ss_pred eeCCcc------------------ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC------CCceEE
Confidence 222221 11233457888999999999999999999988654432222221 134443
Q ss_pred EEEC-CCCCEEEEeeeCCeEEEEeccc
Q 001165 262 ASIA-PEQQILAVGTRRGVVELYDLAE 287 (1134)
Q Consensus 262 va~s-pdg~llAsG~~dg~V~lwd~~~ 287 (1134)
.+-+ ..+..+++ ...|.|.--.+++
T Consensus 307 ta~~~~~~Gi~~V-nr~GqVl~v~v~~ 332 (365)
T 2xzh_A 307 TAPHEATAGIIGV-NRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEGGGTEEEEE-ETTCEEEEEEECT
T ss_pred ecccCCCCcEEEE-cCCCEEEEEEECc
Confidence 3332 33444444 3666666655553
No 331
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.85 E-value=1.8e+02 Score=31.67 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=67.2
Q ss_pred CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 219 ~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
+...++.++++|.++...+.........+.........+.+..+........++..+.+|.+..+..++-....+.
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~---- 188 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRG---- 188 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT----
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCC----
Confidence 4567888999999998877655432222332222222345665554444566778899999999998752111000
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
..|...-.+. ....|..+..-+++..+++.+.+|..+...+.
T Consensus 189 --~~Gv~~i~L~-----~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 189 --TQGVCGMKLK-----EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp --BCCEECCCCC-----TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred --CCCeEeEEeC-----CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 0121111111 23445565555566677788888888888774
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=60.89 E-value=1.7e+02 Score=30.91 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=21.5
Q ss_pred CCCEEEEEeCC-----CeE-EEEccCCcEEEeC
Q 001165 473 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFG 499 (1134)
Q Consensus 473 dG~~LAsgg~d-----G~i-lwd~~sg~Wk~F~ 499 (1134)
+++.++.||.+ ..+ .||..+++|+...
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 78888888854 456 8999999998754
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.32 E-value=55 Score=41.84 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=33.7
Q ss_pred cCeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 318 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 318 g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
..|.+++.++|..++++-+.|+++|+||+.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35788888999999999999999999999999888764
No 334
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=55.70 E-value=3.3e+02 Score=32.60 Aligned_cols=192 Identities=5% Similarity=-0.141 Sum_probs=94.5
Q ss_pred EEEeec-CeEEEEE-cCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEE-eCCCEEEEEEEEecCc
Q 001165 25 IYFKVN-NGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-TSSLYLHIFKVQITEK 101 (1134)
Q Consensus 25 v~fS~d-g~llAs~-s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~-t~dg~l~lw~l~~~~~ 101 (1134)
++|++. ++++.+- ..+.|..++.+...... ..... ..+....+++.++++.|..+ +..+.|.+.+++....
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~-~v~~~-----~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVS-----GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CE-EEECS-----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceE-EEEeC-----CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 778875 5555553 35678888876221100 11111 11345679999976666655 4567888888764322
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEec--CCcEEEEecCCccccceeccccCCCcccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~--dg~v~~~~wd~~~~~~~~~~~~~~~~~~i 179 (1134)
....... +... .-.++.+.++.|+.+.. .+.|.+...||.....+
T Consensus 119 ~~l~~~~-------------------l~~P--~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l------------ 165 (619)
T 3s94_A 119 KVLFWQE-------------------LDQP--RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII------------ 165 (619)
T ss_dssp EEEECSS-------------------CSCC--CCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE------------
T ss_pred EEEEeCC-------------------CCCC--ceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE------------
Confidence 2211000 0000 01133334455665542 34566655555422111
Q ss_pred ccccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEc-CCeEEEEEeccCCccccceecccccCCCCC
Q 001165 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKELGSGD 258 (1134)
Q Consensus 180 ~~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~s-DG~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1134)
....-.....|+++++.+.+.++.. .++|..++.++....... . .....
T Consensus 166 ------------------------~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~--~----~~~~~ 215 (619)
T 3s94_A 166 ------------------------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--K----GSLPH 215 (619)
T ss_dssp ------------------------ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------------
T ss_pred ------------------------EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE--e----CCCCC
Confidence 0011234567899998777777754 355666555432221110 0 01122
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
...+++..+ .+..+-+.++.|...|..
T Consensus 216 P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 216 PFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred ceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 345666666 566666667778877765
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=55.64 E-value=1.8e+02 Score=38.64 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=41.3
Q ss_pred CeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEe-------CCCEEEEEEEEec
Q 001165 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-------SSLYLHIFKVQIT 99 (1134)
Q Consensus 31 g~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-------~dg~l~lw~l~~~ 99 (1134)
.+.|+.+|++.|+-|++.....|.-.+.|+.. +. .-.+..-.-+||.+.++..+ -.|.+.+|.++..
T Consensus 116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~-L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSS-LA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred CCeeEEEcCCeEEEeccCCCCccHHHHhcchh-cc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 34688899999999999643333333334322 11 12355566788888766433 2367888888754
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=54.62 E-value=1.3e+02 Score=33.13 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=36.8
Q ss_pred CEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEE--CC-CCCEEEEE-ECCCcEEEE
Q 001165 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAW--TP-DNSAFAVG-WKSRGLTVW 344 (1134)
Q Consensus 269 ~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~f--SP-DG~~Lasg-~~Dg~I~vW 344 (1134)
.++.+|+.||.|.-.|.+ +|+.+.+++.. ...++....- ++ +|..++.. ..||.+..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~---------------tG~~~W~~~~~---~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~ 72 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRR---------------NGHIIWSIEPE---NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYF 72 (339)
T ss_dssp EEEEEEETTSCEEEEETT---------------TTEEEEEECGG---GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECC---------------CCcEEEEecCC---ccCCcEEecCCccccCCcEEEEEECCCCEEEEE
Confidence 367788889988888887 66666665431 1112111100 01 33344443 467888888
Q ss_pred ecCCCee
Q 001165 345 SVSGCRL 351 (1134)
Q Consensus 345 dv~~~~l 351 (1134)
+..++..
T Consensus 73 ~~~~G~~ 79 (339)
T 2be1_A 73 NAHQGLQ 79 (339)
T ss_dssp ETTTEEE
T ss_pred ECCCCcE
Confidence 8766643
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=52.72 E-value=2.5e+02 Score=30.34 Aligned_cols=67 Identities=10% Similarity=0.219 Sum_probs=37.5
Q ss_pred cCCCCEEEEEeCC----------------------CeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecC
Q 001165 471 SKDGMFLAVAGLH----------------------GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDS 527 (1134)
Q Consensus 471 SpdG~~LAsgg~d----------------------G~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~ 527 (1134)
..+++.++.||.+ ..+ +||..++.|...+........ ...+...+.++|+|++...
T Consensus 250 ~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 250 ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-GVSLPWNNSLLIIGGETAG 328 (357)
T ss_dssp EETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-SEEEEETTEEEEEEEECGG
T ss_pred EECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-ceeEEeCCEEEEEeeeCCC
Confidence 3477888888742 135 899999999987654433321 2234456677888887643
Q ss_pred CC-eeEEEEEeC
Q 001165 528 SN-TYELLFYPR 538 (1134)
Q Consensus 528 ~~-~~eLrly~~ 538 (1134)
.. ...+-++..
T Consensus 329 ~~~~~~v~~l~~ 340 (357)
T 2uvk_A 329 GKAVTDSVLITV 340 (357)
T ss_dssp GCEEEEEEEEEC
T ss_pred CCEeeeEEEEEE
Confidence 32 244544444
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=46.95 E-value=2.9e+02 Score=29.30 Aligned_cols=52 Identities=23% Similarity=0.476 Sum_probs=34.1
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEe
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYI 525 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~ 525 (1134)
+++.++.||.++ .+ .||..+++|............ .......+.++|++++.
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS-LSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc-eeEEEECCEEEEECCcc
Confidence 788888888765 36 899999999988654333321 12223345567777664
No 339
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.81 E-value=56 Score=42.71 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=32.3
Q ss_pred CeEEEEECCCCCEEEEEECCCcEEEEecCCCeeEEEe
Q 001165 319 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 355 (1134)
Q Consensus 319 ~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~~~l~~tl 355 (1134)
.+.+++.+++..++++-+.|+++||||+.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4566777889999999999999999999999888774
No 340
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.17 E-value=2.7e+02 Score=33.28 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=16.1
Q ss_pred CcCeEEEEECCCCCEEEEE
Q 001165 317 TGPVSCIAWTPDNSAFAVG 335 (1134)
Q Consensus 317 ~g~V~~l~fSPDG~~Lasg 335 (1134)
...++.++|+|||+.|.+.
T Consensus 530 gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 530 GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TCEEEEEEECTTSSEEEEE
T ss_pred CccCcCeeECCCCCEEEEE
Confidence 3569999999999988776
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=42.43 E-value=3.3e+02 Score=28.72 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=40.4
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
+++.++.||.++ .+ .||..++.|............ .......+.++|++++........+.+|+..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence 778888888653 46 999999999987654333221 1222334556666655543334567777663
No 342
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.34 E-value=3.2e+02 Score=28.60 Aligned_cols=127 Identities=8% Similarity=-0.063 Sum_probs=69.7
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCcccccee---cccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI---KIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
..+..+......+.++..++.|+++-+...........+. ........+.+..+..-.+...+..++.+|.++...+
T Consensus 33 D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~ 112 (256)
T 1zvt_A 33 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 112 (256)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEH
Confidence 3444554555566788889999988776643311111111 0111112345666644345666788899999999998
Q ss_pred cccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEEC-CCCCEEEEEECCCcEEEEecCC
Q 001165 286 AESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSG 348 (1134)
Q Consensus 286 ~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fS-PDG~~Lasg~~Dg~I~vWdv~~ 348 (1134)
++.....+ .|.....++ ..+.+-.+... .++..++..+.+|.+..+++..
T Consensus 113 ~e~~~~~r--------~G~~~i~L~-----~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 113 NDLVARNR--------AGKALITLP-----ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp GGGCCCST--------TCEECBCCC-----TTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred HHhcccCc--------CceEEEEEC-----CCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 75432110 122111111 12344444444 3455777778888887777753
No 343
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=42.13 E-value=3.4e+02 Score=28.74 Aligned_cols=185 Identities=10% Similarity=-0.020 Sum_probs=95.1
Q ss_pred ceeEEEeecCeEEEEEcCCeEEEeecCCcceeEEEeecChhhHHhhcceeEEEEcCCceEEEEEeCCCEEEEEEEEecCc
Q 001165 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1134)
Q Consensus 22 ~~iv~fS~dg~llAs~s~~~l~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~lw~l~~~~~ 101 (1134)
..|+.++.-....++.+++.|+.|-.+.. -+++. +. .....+..|+...+ ..+|. + ||.|.-|--....+
T Consensus 24 ~~i~~ia~G~~h~~~l~~G~v~~wG~n~~-Gqlg~----p~--~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALKGGKVLGWGANLN-GQLTM----PA--ATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SSCCEEEECSSEEEEEETTEEEEEECCSS-STTSC----CG--GGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTST
T ss_pred CCCcEEEeCCCeEEEEECCEEEEEeCCCC-CCCCC----Cc--cCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCC
Confidence 35666666655444445889999987632 12221 11 11235677777654 34444 5 88887776432111
Q ss_pred ceecCCCCCCCcceeeEEEeeceeeccccccceEEEeeeCCCeEEEEecCCcEEEEecCCccccceeccccCCCcccccc
Q 001165 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1134)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~V~~~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~~~~i~~ 181 (1134)
.+. |.. + ...|..+++.....++-+ +|.++.|-.+.. +.+-
T Consensus 94 ---------lg~--------P~~---~---~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~--gqlg------------- 134 (282)
T 3qhy_B 94 ---------TTV--------PAE---A---RSGVDAIAAGAWASYALK-DGKVIAWGDDSD--GQTT------------- 134 (282)
T ss_dssp ---------TCC--------CGG---G---SSSEEEEEEETTEEEEEE-TTEEEEEECCTT--STTS-------------
T ss_pred ---------CCC--------Ccc---c---CCCeEEEECcCCEEEEEe-CCeEEEecCCCC--CcCC-------------
Confidence 010 000 1 124677777667666667 999987654422 1110
Q ss_pred ccccCCCccccccCCCcccccccCCCcccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEE
Q 001165 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC 261 (1134)
Q Consensus 182 i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1134)
+| ......|..|+-... ..++.+ ||+++.|-.+...... ... .....+..
T Consensus 135 ~~---------------------~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg---~p~---~~~~~v~~ 184 (282)
T 3qhy_B 135 VP---------------------AEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT---VPA---EAQSGVDD 184 (282)
T ss_dssp CC---------------------GGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS---CCG---GGGSSEEE
T ss_pred CC---------------------ccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC---Cce---ecCCCeEE
Confidence 00 001233555543322 233344 8999998776433211 110 01245666
Q ss_pred EEECCCCCEEEEeeeCCeEEEEecccc
Q 001165 262 ASIAPEQQILAVGTRRGVVELYDLAES 288 (1134)
Q Consensus 262 va~spdg~llAsG~~dg~V~lwd~~~~ 288 (1134)
++-..+.. +|. .||.|..|-....
T Consensus 185 i~~G~~hs-~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 185 VAGGIFHS-LAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp EEECSSEE-EEE--ETTEEEEEECCTT
T ss_pred EEecCCEE-EEE--ECCeEEEEECCCC
Confidence 66555543 444 5999999987643
No 344
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=40.09 E-value=3.9e+02 Score=28.85 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=49.2
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc--cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
+..+..+......+.++.++++|....+..+...... ..+.........+.+..+..-+++..+++.+.+|..+..++
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 4556665555556678899999998887765432211 12322211122345565554445566778899999999988
Q ss_pred cc
Q 001165 286 AE 287 (1134)
Q Consensus 286 ~~ 287 (1134)
++
T Consensus 230 ~e 231 (312)
T 1suu_A 230 SK 231 (312)
T ss_dssp GG
T ss_pred HH
Confidence 74
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.87 E-value=3.8e+02 Score=28.36 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=81.1
Q ss_pred cEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccc
Q 001165 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (1134)
Q Consensus 210 ~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~ 289 (1134)
.|.+|+-.. ...+... ||+++.|-.+...... +.. .....+..++...... +|. . ||.|..|-.....
T Consensus 25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg---~p~---~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLT---MPA---ATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDG 92 (282)
T ss_dssp SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTS---CCG---GGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTS
T ss_pred CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCC---CCc---cCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCC
Confidence 345554332 2333345 9999999876433211 111 0113566666655543 344 4 8999988876433
Q ss_pred cceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecCC-CeeEEEeccCCCCceeeeEE
Q 001165 290 SLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIV 368 (1134)
Q Consensus 290 ~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~~-~~l~~tl~~h~~~~V~sv~~ 368 (1134)
..-. +..-...|..|+...+- .+|. . ||.|..|-... +++- ++......|..++.
T Consensus 93 qlg~-------------------P~~~~~~v~~ia~G~~h-s~al-~-~G~v~~wG~n~~gqlg--~~~~~~~~i~~i~~ 148 (282)
T 3qhy_B 93 QTTV-------------------PAEARSGVDAIAAGAWA-SYAL-K-DGKVIAWGDDSDGQTT--VPAEAQSGVTALDG 148 (282)
T ss_dssp TTCC-------------------CGGGSSSEEEEEEETTE-EEEE-E-TTEEEEEECCTTSTTS--CCGGGGSSEEEEEE
T ss_pred CCCC-------------------CcccCCCeEEEECcCCE-EEEE-e-CCeEEEecCCCCCcCC--CCccCCCCeEEEEc
Confidence 2110 00012356666655432 2333 2 78888886532 2211 01111223444444
Q ss_pred cCCCCCCcceEEEcceeEEEeCCCceEEEEecCCCccEEEEecC-CEEEeeecCCcEEeeee
Q 001165 369 KPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFG-KCCLNRGVSGMTYARQV 429 (1134)
Q Consensus 369 sp~~~~~~~~l~sgs~i~~W~~~~~~l~~~~~~h~~~v~~~s~~-k~l~S~s~d~ti~~w~l 429 (1134)
.... ..+++...+..|..+.+-.+.....-...|..++.+ ...+.- .|+.+..|-.
T Consensus 149 G~~~----~~~l~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~ 205 (282)
T 3qhy_B 149 GVYT----ALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGD 205 (282)
T ss_dssp CSSE----EEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEEC
T ss_pred ccCE----EEEEECCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEEC
Confidence 3322 233333356666654321111111112345555552 222222 4777777753
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.32 E-value=5.3e+02 Score=29.66 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.3
Q ss_pred CeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 258 DAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 258 ~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
=..++.+|++..++-.-+.-|-|.+||+.
T Consensus 260 FPvamqvs~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred ceeEEEecccCCEEEEEecCceEEEEecc
Confidence 35689999999999888999999999999
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=36.28 E-value=6.3e+02 Score=30.53 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=40.6
Q ss_pred EEEcCC-CCEEEEEeC--C-----CeE-EEEccCCc------EEEeCCccceeeeEEEEEEee-CCEEEEEEEecCC---
Q 001165 468 VAASKD-GMFLAVAGL--H-----GLI-LYDIRQKK------WRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSS--- 528 (1134)
Q Consensus 468 va~Spd-G~~LAsgg~--d-----G~i-lwd~~sg~------Wk~F~~~~~e~~~~v~gl~W~-~~~lv~~~~~~~~--- 528 (1134)
+++..+ |+.++.||. + ..+ .||..++. |.................... +.++|+|++....
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 455555 777788876 2 246 89999998 776543111111112233445 5667777654332
Q ss_pred CeeEEEEEeCC
Q 001165 529 NTYELLFYPRY 539 (1134)
Q Consensus 529 ~~~eLrly~~~ 539 (1134)
....+.+|+..
T Consensus 624 ~~~~v~~yd~~ 634 (695)
T 2zwa_A 624 RTNSIISLDPL 634 (695)
T ss_dssp TTTSEEEEETT
T ss_pred CCCeEEEEECC
Confidence 24567777663
No 348
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=34.98 E-value=4.3e+02 Score=27.91 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=49.5
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc--cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
+..+..+......+.++..+++|+++.+......... ..+.........+.+..+..-+++..+.+.+.+|.++...+
T Consensus 115 gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 115 GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEH
Confidence 3455566566666788999999999887765433211 12222111112355665544455667888899999998888
Q ss_pred cc
Q 001165 286 AE 287 (1134)
Q Consensus 286 ~~ 287 (1134)
++
T Consensus 195 ~e 196 (276)
T 3no0_A 195 EE 196 (276)
T ss_dssp GG
T ss_pred HH
Confidence 74
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.70 E-value=8.5e+02 Score=30.69 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=50.4
Q ss_pred eeeCCCeEEEEecCCcEEEEecCCccccceeccccCCC-ccccc-cccccCCCccccccCCCcccccccCCCcccEEEEE
Q 001165 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND-SSVAA-LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1134)
Q Consensus 138 ~s~d~~~llv~t~dg~v~~~~wd~~~~~~~~~~~~~~~-~~~i~-~i~~~~~~~l~s~~~~~~~~~~~~~~~~~~V~~i~ 215 (1134)
.+.+.+.++++..||.+.++.++..............+ ...++ ..|+ .. ...-......+.++.
T Consensus 177 ~av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~--------~~------~~~~~~~~~~~~~~~ 242 (950)
T 4gq2_M 177 AAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSL--------QA------FKADYRSPNTIISMI 242 (950)
T ss_dssp EECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC---------------------CCSSCCCTTCEEEEE
T ss_pred EEEcCCeEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhhccc--------cc------CCCCCCCcceEEEEe
Confidence 34467889999999999888776543221110000000 00000 0010 00 000111234567888
Q ss_pred EcCCCCeEEEEEcCCeEEEEEeccC
Q 001165 216 LCLPMRLLFVLYSNGQLMSCSVSKK 240 (1134)
Q Consensus 216 fsp~~~~la~~~sDG~v~l~~~~~~ 240 (1134)
..++...+.+.+.|+++++|++.++
T Consensus 243 ~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 243 FLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp EETTTTEEEEEETTCEEEEEETTTT
T ss_pred ecCCCcEEEEEECCCEEEEEECCCC
Confidence 8888899999999999999998654
No 350
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=32.53 E-value=4.7e+02 Score=27.58 Aligned_cols=52 Identities=17% Similarity=0.447 Sum_probs=31.9
Q ss_pred CCCEEEEEeCCC-----eE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEe
Q 001165 473 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYI 525 (1134)
Q Consensus 473 dG~~LAsgg~dG-----~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~ 525 (1134)
+|+.++.||.++ .+ .||..+++|............ .......+.+++++++.
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLVSLAGSLYAIGGFA 263 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEEEETTEEEEECCBC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEEEECCEEEEECCee
Confidence 778888887543 45 899999999987654433211 12223345566666553
No 351
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=31.96 E-value=5.1e+02 Score=27.81 Aligned_cols=129 Identities=8% Similarity=-0.029 Sum_probs=69.2
Q ss_pred cccEEEEEEc---CCCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEe
Q 001165 208 SSAIIWLELC---LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (1134)
Q Consensus 208 ~~~V~~i~fs---p~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd 284 (1134)
+..|.++..- .+...++.++.+|.+..............+....+....+.+..+........|+..+.+|.+..++
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 3445555331 2455788999999998877655443222232221111224555544444445677778899888888
Q ss_pred ccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 285 LAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 285 ~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
..+-....+. . .|...-.+ .....|.++...+++..+++.+..|..+-.++.
T Consensus 174 ~~~v~~~gr~----a--~Gv~~i~L-----~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 174 ESSVRAMGCN----T--TGVRGIRL-----GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp GGGSCBCCTT----C--CCEECCCC-----CTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred HHHcCccCCC----C--CCeEeEEe-----CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 7642110000 0 11111111 123456666555556678888888888877763
No 352
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.94 E-value=5.8e+02 Score=30.27 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=16.7
Q ss_pred cCeEEEEECCCCCEEEEEEC
Q 001165 318 GPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 318 g~V~~l~fSPDG~~Lasg~~ 337 (1134)
..++.++||||++.|.++-.
T Consensus 531 aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 531 CEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEEECTTSSEEEEEEE
T ss_pred ccccCCEECCCCCEEEEEEe
Confidence 46899999999998888743
No 353
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=28.83 E-value=1.2e+03 Score=31.15 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=25.4
Q ss_pred eEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 259 AVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 259 ~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..++.+|++...+-.-+.-|-|.+||+.
T Consensus 261 pv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred ceEEEeccccCEEEEEecCceEEEEecc
Confidence 5688899999998888999999999999
No 354
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=25.83 E-value=44 Score=21.29 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCcHHHHHHH
Q 001165 772 HCLLRHLLQRDKIEEALRL 790 (1134)
Q Consensus 772 ~~il~~ll~~~~~~~a~~~ 790 (1134)
|++||.||-++++..|+..
T Consensus 3 ~~LLRyLLDkDdgnaalry 21 (26)
T 2ao6_B 3 NALLRYLLDKDDGNAALRY 21 (26)
T ss_pred cHHHHHHHccccchHHHHH
Confidence 6789999999999888754
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=25.31 E-value=68 Score=38.03 Aligned_cols=110 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred EEEcCCCCeEEEEE-cCCeEEEEEeccCCc-------cccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEec
Q 001165 214 LELCLPMRLLFVLY-SNGQLMSCSVSKKGL-------KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (1134)
Q Consensus 214 i~fsp~~~~la~~~-sDG~v~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~ 285 (1134)
+..+|||+++++.. -+.++.++++.+... .....+..+.-++ -...-.+|.++|....+---|.+|.-|++
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEEEEec
Q ss_pred ccc---------ccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEEC
Q 001165 286 AES---------ASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWK 337 (1134)
Q Consensus 286 ~~~---------~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~ 337 (1134)
++. .....++... +.++|......=.-.|||++|++...
T Consensus 407 ~~a~~~~~g~~~~~v~~k~dv~-------------YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 407 EEAVRAYKGEKVNYIKQKLDVH-------------YQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp HHHHHHHTTCCCCCEEEEEECS-------------SCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred cHHHHHhcCccCCeeeeccccc-------------cCCcccccCCCccCCCCccEEEEecc
No 356
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=24.96 E-value=6.2e+02 Score=26.56 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred CCCCEEEEEeCCC--------------eE-EEEccCCcEEEe
Q 001165 472 KDGMFLAVAGLHG--------------LI-LYDIRQKKWRVF 498 (1134)
Q Consensus 472 pdG~~LAsgg~dG--------------~i-lwd~~sg~Wk~F 498 (1134)
-+|+.++.||.++ .+ .||..+++|+..
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 3678888888643 36 899999999875
No 357
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=23.58 E-value=6.5e+02 Score=26.33 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=42.6
Q ss_pred CCCCEEEEEeC-C-----CeE-EEEccCCcEEEeCCccceeeeEEEEEEeeCCEEEEEEEecCCCeeEEEEEeCC
Q 001165 472 KDGMFLAVAGL-H-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 539 (1134)
Q Consensus 472 pdG~~LAsgg~-d-----G~i-lwd~~sg~Wk~F~~~~~e~~~~v~gl~W~~~~lv~~~~~~~~~~~eLrly~~~ 539 (1134)
-+++.++.||. + ..+ .||..+++|........... ........+.++|++++........+.+|+..
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-LFGATVHDGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEEEEECSSSEEEEEEEEETT
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-ceEEEEECCEEEEEeccCCCCccceEEEEECC
Confidence 47778888886 2 346 89999999998765433221 12223345667777877654445567777664
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=23.30 E-value=8.3e+02 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCC-EEEEeeeCCeEEEEecc
Q 001165 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 257 ~~~~~va~spdg~-llAsG~~dg~V~lwd~~ 286 (1134)
.....++|.|+|+ .|.++...|.|++++.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4567899999996 34445778999999754
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.66 E-value=7.5e+02 Score=26.70 Aligned_cols=117 Identities=8% Similarity=0.005 Sum_probs=62.3
Q ss_pred CCeEEEEEcCCeEEEEEeccCCccc-cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeee
Q 001165 220 MRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1134)
Q Consensus 220 ~~~la~~~sDG~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~ 298 (1134)
...++.++.+|.+.......+.... ..+....+....+.+..+........|+..+.+|.+..++.++-....+.
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~---- 181 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR---- 181 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS----
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC----
Confidence 4578899999999987776544322 22332212122245555544445556777889999888888742110000
Q ss_pred ccCcceEEEEeecccCCCCcCeEEEEECCCCC-EEEEEECCCcEEEEecC
Q 001165 299 DWGMREVYYTFCRYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 299 ~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~-~Lasg~~Dg~I~vWdv~ 347 (1134)
. .|...-.+. ....|.++..-+++. .|.+.+..|..+.-++.
T Consensus 182 a--~GV~~i~L~-----~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 182 A--AGVKGMNLK-----EGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp C--CCEECCCCC-----TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred C--cCEEEEEeC-----CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 0 111111111 223455554334444 67777777776666553
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=22.04 E-value=7.8e+02 Score=26.65 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=50.9
Q ss_pred cccEEEEEEcCCCCeEEEEEcCCeEEEEEec--cCCcc--ccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEE
Q 001165 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVS--KKGLK--LAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (1134)
Q Consensus 208 ~~~V~~i~fsp~~~~la~~~sDG~v~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lw 283 (1134)
+..+..+......+.++..+++|+++.+... .-... ...+.........+.+.++..-+++..+++.+..|.++.-
T Consensus 145 ~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt 224 (327)
T 3uc1_A 145 NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRT 224 (327)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEE
Confidence 3455555556666788999999999887766 32221 1122221111223556666655566688888999999988
Q ss_pred ecccc
Q 001165 284 DLAES 288 (1134)
Q Consensus 284 d~~~~ 288 (1134)
.+++.
T Consensus 225 ~l~e~ 229 (327)
T 3uc1_A 225 AIEEY 229 (327)
T ss_dssp EGGGS
T ss_pred EHHHc
Confidence 87743
No 361
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=21.80 E-value=7.5e+02 Score=26.39 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=48.9
Q ss_pred ccEEEEEEcCCCCeEEEEEcCCeEEEEEeccCCccc--cceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 209 ~~V~~i~fsp~~~~la~~~sDG~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
..+..+......+.++..+++|++..+......... ..+.........+.+.++..-+++..+++.+..|.++-.+++
T Consensus 146 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 146 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 455555555556678889999998877765432211 112221111123556666555556678888999999988876
Q ss_pred c
Q 001165 287 E 287 (1134)
Q Consensus 287 ~ 287 (1134)
+
T Consensus 226 e 226 (307)
T 1zi0_A 226 E 226 (307)
T ss_dssp G
T ss_pred H
Confidence 4
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=20.85 E-value=7.5e+02 Score=25.99 Aligned_cols=128 Identities=11% Similarity=-0.016 Sum_probs=71.8
Q ss_pred cccEEEEEEcC-CCCeEEEEEcCCeEEEEEeccCCccccceecccccCCCCCeEEEEECCCCCEEEEeeeCCeEEEEecc
Q 001165 208 SSAIIWLELCL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (1134)
Q Consensus 208 ~~~V~~i~fsp-~~~~la~~~sDG~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~va~spdg~llAsG~~dg~V~lwd~~ 286 (1134)
+..|.++.-.. +...++.++.+|.+......... ....+.........+.+..+........++..+.+|.+..++..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 44555553321 45688999999999887766554 22222222111223455555555566678888999998888776
Q ss_pred ccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCcEEEEecC
Q 001165 287 ESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 347 (1134)
Q Consensus 287 ~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~I~vWdv~ 347 (1134)
+-....+. . .|...-.+. ....|..+...+++..+...++.|.++...+.
T Consensus 146 eip~~gR~----a--~Gv~~i~L~-----~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 146 EVPPSTPG----A--RGVQGIKLE-----KNDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp GSCBCCTT----C--CCEECCCCC-----TTCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred hCCCcCCC----C--CCEEEEccC-----CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 32110000 0 122211111 22455555545566678888888888887764
No 363
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=20.43 E-value=8.9e+02 Score=26.71 Aligned_cols=197 Identities=18% Similarity=0.245 Sum_probs=104.1
Q ss_pred EEEECCCCCEEEEeeeCCeEEEEeccccccceeeeeeeccCcceEEEEeecccCCCCcCeEEEEECCCCCEEEEEECCCc
Q 001165 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGMREVYYTFCRYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 340 (1134)
Q Consensus 261 ~va~spdg~llAsG~~dg~V~lwd~~~~~~~~~~l~l~~~~~~~~l~~l~~~~~~h~g~V~~l~fSPDG~~Lasg~~Dg~ 340 (1134)
++-.||..+.||.-. ..++.+||++ +.+.++... -..+|.-=+|-.+.. |+--.. ..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnle---------------tK~klks~~-----~~e~VvfWkWis~~~-L~lVT~-ta 127 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIE---------------MKSKMKAHT-----MTDDVTFWKWISLNT-VALVTD-NA 127 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETT---------------TTEEEEEEE-----CSSCEEEEEECSSSE-EEEEES-SE
T ss_pred eeeeCCCccEEEEec-CCeEEEechH---------------Hhhhhccee-----cCCccEEEEecCCCe-EEEEcC-Cc
Confidence 566899999999865 7899999999 555555533 235677778865543 333333 58
Q ss_pred EEEEecCCC-eeEEEeccCC---CCceeeeEEcCCCCCCcce-EEEcc---------eeEEEeCCCceEEEEecCCCccE
Q 001165 341 LTVWSVSGC-RLMSTIRQIS---LSSISSPIVKPNQDCKYEP-LMSGT---------SMMQWDEYGYRLYAIEEGSSERV 406 (1134)
Q Consensus 341 I~vWdv~~~-~l~~tl~~h~---~~~V~sv~~sp~~~~~~~~-l~sgs---------~i~~W~~~~~~l~~~~~~h~~~v 406 (1134)
|.-|++++. .+...+.-|. ...|..-..+++. +- ++.|. .+.+++.+.+. -....||....
T Consensus 128 VyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~----kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F 202 (365)
T 2xzh_A 128 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ----KWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF 202 (365)
T ss_dssp EEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTS----CEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEE
T ss_pred EEEEcccCCCCCceeeecchhcccceEEEEEECCCC----CEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeee
Confidence 999999763 3444444331 1223333444443 22 22222 45566655433 23334554443
Q ss_pred EEEec-CC-----EE--EeeecC-CcEEeeeeeeCCCeEEEeecCCCccccccc--cccceeeccCCCceEEEEEcCCCC
Q 001165 407 LIFSF-GK-----CC--LNRGVS-GMTYARQVIYGEDRLLVVQSEDTDELKILH--LNLPVSYISQNWPVQHVAASKDGM 475 (1134)
Q Consensus 407 ~~~s~-~k-----~l--~S~s~d-~ti~~w~l~~~~~~l~l~~g~~~~~~~w~~--~~~~~~~~~h~~~V~~va~SpdG~ 475 (1134)
..+.+ |. .+ +.-+.. +.+++-++... +.+.+.+.-.. +..|.. .....|| ++.+|+.-.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~--------~~~~~~f~kk~vdi~fppe-a~~DFPV-amqvs~kyg 272 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP--------PTGNQPFPKKAVDVFFPPE-AQNDFPV-AMQISEKHD 272 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC--------CTTCCCCCCEEEEECCCTT-CTTCCEE-EEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC--------CCCCCCcccccceeeCCcc-ccCCceE-EEEecccCC
Confidence 33332 11 01 111111 12222222111 00111111111 112222 1233466 888888888
Q ss_pred EEEEEeCCCeE-EEEccCCcE
Q 001165 476 FLAVAGLHGLI-LYDIRQKKW 495 (1134)
Q Consensus 476 ~LAsgg~dG~i-lwd~~sg~W 495 (1134)
.+..-++.|.+ +||+.|+..
T Consensus 273 viyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCcEEEEEEcccCcE
Confidence 99999999999 999999964
Done!