BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001167
(1134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H7Z3|NRDE2_HUMAN Protein NRDE2 homolog OS=Homo sapiens GN=NRDE2 PE=1 SV=3
Length = 1164
Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 295/1176 (25%), Positives = 481/1176 (40%), Gaps = 236/1176 (20%)
Query: 58 AAASAYKDESDDNEEKDDQPRPSLSPSYDLLEEESDEERQRKKKDKKKKRKRRRSKERGD 117
+S+ + E+D + EKD +P + S KK+ ++ + + + G
Sbjct: 103 GPSSSSRSETDTDSEKD-KPSRGVGGS--------------KKESEEPNQGNNAAADTGH 147
Query: 118 QF---DSFVSAKSKDYYFDSHGDRDNLVYGRLYRMDVPRYKAYDPEKLSRFHSEGVVRLN 174
+F + + + + D D N Y LYR D+ RYK + + +N
Sbjct: 148 RFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKR---------KGDSCLGIN 198
Query: 175 KSGSVLDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNLKHVCLILPKKSAVSEYGEDFI 234
+ + E K RY++ K L N+ V I K S FI
Sbjct: 199 PKKQCISWEGTSTEKKHSRKQVERYFTKKSVGL---MNIDGVA-ISSKTEPPSSEPISFI 254
Query: 235 PL--------LGTEMSIEGHHDNSIL------------------EESWEDEVLR-KTKEF 267
P+ + T ++ G +D S + E L+ K +EF
Sbjct: 255 PVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEF 314
Query: 268 NKLTREHPYDVKGWLEFADFQDVV-----------GSKES-KRGVRLQILEKKISILEKA 315
N+ RE+P D + W+ F FQD V G +E KR ++L ILEKK++ILE+A
Sbjct: 315 NRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKL-ILEKKLAILERA 373
Query: 316 VELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFK 375
+E N + +L L+ +K L++ W+K++ H + LW+++L Q +FS F
Sbjct: 374 IESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFS 433
Query: 376 VSELRKMYAHAIQALSAACIKQFRQVNQTVKPASL--DPAIIQLELGLVDIFLSLCRLEW 433
+S++ +Y + LSA VK S+ PA+ E + +FL C
Sbjct: 434 ISKIHSLYGKCLSTLSA------------VKDGSILSHPALPGTEEAMFALFLQQCHFLR 481
Query: 434 QAGYQELATALFQAEIEFSLFCPSLL--LTEQSKHRLFEHFWNGDGARVGEEGALGWSAW 491
QAG+ E A +LFQA ++F+ F P + L + + FE FW+ R GE+GA GW AW
Sbjct: 482 QAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAW 541
Query: 492 LEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKE 551
+ H E+GGW ++ +E + E E
Sbjct: 542 M----------------HQQERGGWV----------------------VINPDEDDDEPE 563
Query: 552 VMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLS 611
QE + L + W W E SRD HW P + +
Sbjct: 564 EDDQEIKDKTLPR-------------------WQIWLAAERSRDQRHWRPWRPDKTKKQT 604
Query: 612 DATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSSSW 671
+ ED E E + ++++D+ + L LSS + + L+ F+ F G V G +S
Sbjct: 605 E--EDCEDPE---RQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLG--VPSGFTPPASCL 657
Query: 672 NENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISRRTKMM------ 725
+L+ I D+ + + F + L ++ + R ++
Sbjct: 658 ------------YLAMDENSIFDNGLYDEKPLTFF--NPLFSGASCVGRMDRLGYPRWTR 703
Query: 726 -------EFLRNAILLCLTVFPR--------NYVLEEAALVAEELSVTKMNLSGCSVTPC 770
EF+RN L + +F +++ E A V L C
Sbjct: 704 GQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNC 763
Query: 771 QPLAKGLLK--SDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPL 828
+ LAK LLK + + L YA E GN + AR+VFD AL + G + S+
Sbjct: 764 KKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTAL-GMAGSRELKDSDLCE 822
Query: 829 LYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERI 888
L L YAE+E+ + ++ RA+H+L+ L S Y P+ Q V +L+A + Y +
Sbjct: 823 LSLLYAELEVELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHAL 882
Query: 889 KAV--RSAWLRGAVSDQSIALICSAA---LFEELTNGWTAGIEVLHQAFAM----VLPE- 938
+ S A +D LI A LF+ LT G A +++ Q FA V PE
Sbjct: 883 QDCLGDSCVSNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEG 942
Query: 939 --------RRSCSHQLEFLFNFNVRMLQRHHK--QLSLSTVWETTLHGLQIYPYSPKLFN 988
+S + LE + + +L+ H K L+ + E L++YP + L+
Sbjct: 943 SGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWR 1002
Query: 989 TLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRK----------------- 1031
+ V+I N + +K R FD L LFA+ E RK
Sbjct: 1003 SYVQIQNKSHSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHAT 1062
Query: 1032 ----GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087
G HRI+ LFE A+ +D+ +LWR Y+ + V + N ++ +F++A+ CPW
Sbjct: 1063 IPETGLMHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLG-NKERSKGVFYKALQNCPW 1121
Query: 1088 SKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLR 1123
+K L+LD E+ ++ ++M +KEL +R
Sbjct: 1122 AKVLYLDAVEYF-----PDEMQEILDLMTEKELRVR 1152
>sp|Q80XC6|NRDE2_MOUSE Protein NRDE2 homolog OS=Mus musculus GN=Nrde2 PE=2 SV=3
Length = 1172
Score = 259 bits (663), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 258/932 (27%), Positives = 402/932 (43%), Gaps = 161/932 (17%)
Query: 263 KTKEFNKLTREHPYDVKGWLEFADFQDVV-----------GSKESKRGVRLQILEKKISI 311
+ +EFN+ RE+P+D + W+ F FQD V G +E R +LEKK+++
Sbjct: 319 RVEEFNRRVRENPWDTQLWMAFVAFQDEVMRSPGIYALGEGEQEKHRKSLKLLLEKKLAV 378
Query: 312 LEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEF 371
LE+A+E NP + EL L+ ++ L + W+K+L H + LW+ +L Q +F
Sbjct: 379 LERAIESNPGSVELKLAKLQLCSEFWEPSALAKEWQKLLFLHPNNTSLWQRYLSFCQSQF 438
Query: 372 SRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRL 431
F VS+L +Y + LSA +K ++ V P + E + +FL C
Sbjct: 439 GTFSVSKLHSLYGKCLSTLSA--VKDGSMLSHPVLPGT--------EEAMFGLFLQQCHF 488
Query: 432 EWQAGYQELATALFQAEIEFSLFCPSLL--LTEQSKHRLFEHFWNGDGARVGEEGALGWS 489
QAG+ E +LFQA ++F+ F P + L + + FE FW+ RVGE+GA GW
Sbjct: 489 LRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWR 548
Query: 490 AWLEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIE 549
AW+ H E+GGW ++ +E + E
Sbjct: 549 AWM----------------HQQERGGWV----------------------LITPDEDDEE 570
Query: 550 KEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIP 609
E QE + L + W W E SRD HW P +
Sbjct: 571 PEEEDQEIKDKTLPR-------------------WQIWLAVERSRDQRHWRPWRPDKTKK 611
Query: 610 LSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQGICTNSS 669
++ ED E E + ++++D+ + L LSS + + L+ F+ F G V G +S
Sbjct: 612 QTE--EDCEDPE---RQVLFDDIGQSLIRLSSPDLQFQLIQAFLQFLG--VPSGFLPPAS 664
Query: 670 SWNENLLTLETLPDFLSESLGKIDDDPAKTQSTSSSFSLDILLGSSNDISR-------RT 722
L ++ F SE D+ P + SFS +GS + R
Sbjct: 665 CL---YLAMDESSIFESE---LYDEKPLTY--FNPSFSGISCVGSMEQLGRPRWTKGHNR 716
Query: 723 KMMEFLRNAILLCLTVFPR--------NYVLEEAALVAEELSVTKMNLSGCSVTPCQPLA 774
+ EF+RN L L + +++ E A V L K L + C+ LA
Sbjct: 717 EGEEFVRNVFHLVLPLLAGKQKSQLSLSWLRYEIAKVIWCLHTKKKRLKSQGKS-CKKLA 775
Query: 775 KGLLK--SDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLW 832
K LLK +R + L YA E GN + AR+VFD AL S+ G + L L
Sbjct: 776 KNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTAL-SMAGSSELKDRELCELSLL 834
Query: 833 YAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERI---- 888
YAE+E+ + S ++ RA+H+L+ L S Y P+ Q S+ QVL+A + Y +
Sbjct: 835 YAELEMELSPDSRGATTGRAVHILTRLTESSPYGPYTGQVSSTQVLKARKAYELALQDCL 894
Query: 889 -KAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVL---------PE 938
++ S+ D +L+ LF+ LT G A +++ + FA + PE
Sbjct: 895 GQSCASSPAPAEALDCLGSLVRCFMLFQYLTVGIDAAVQIYGRVFAKLKGSARLEDPGPE 954
Query: 939 RRSCSHQLEFLFNFNVRM---LQRHHKQLS---LSTVWETTLHGLQIYPYSPKLFNTLVE 992
+ S L + M L R H + L+ + ET L++YP + L+ V+
Sbjct: 955 DSTSSQSLTNVLEAVSMMHTSLLRFHMNVCVYPLAPLRETLSDALKLYPGNQVLWRAYVQ 1014
Query: 993 ISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRK--------------------- 1031
I N + NK R FD L LFA+ E RK
Sbjct: 1015 IQNKSHSANKTRRFFDTVTRSAKHLEPWLFAIEAEKLRKKLVESVQRVGGREVHATIPET 1074
Query: 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091
G HRIR LFE A+ +D +LWR Y+ + V + N ++ +F++A+ +CPW+K L
Sbjct: 1075 GLTHRIRALFENAIRSDKGNQCPLLWRMYLNFLVSLG-NKERSKGVFYKALQSCPWAKVL 1133
Query: 1092 WLDGFLKLNSILTAKELSDLQEVMRDKELNLR 1123
++D EL ++ +VM +KEL +R
Sbjct: 1134 YMDAMEYF-----PDELQEILDVMTEKELRVR 1160
>sp|O42975|NRDE2_SCHPO Protein NRDE2 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC20F10.05 PE=1 SV=1
Length = 972
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 179/426 (42%), Gaps = 65/426 (15%)
Query: 101 KDKKKKRKRRRSKERGDQFDSFVSAKS--KDYYFDSHGDRDNLVYGRLYRMDVPRY---- 154
K KK R SF S +S ++ D+ G++ NL+YG + + VP+Y
Sbjct: 27 KSNKKYRSSHDQVSSNHAKSSFPSHRSIQSNFAVDTKGEKQNLLYG-INKRPVPKYHRSS 85
Query: 155 -KAYDPEKLSRFHSEGVVRLNKSGSVLDGDYDVNEMDSKVKSGGRYWSSKYAALERHKNL 213
Y L R +V+ +K G L+ K KS + + + E+ +
Sbjct: 86 SSVYGSAPLLR-----IVKESKEGITLN----------KKKSLEIKYDEERSFDEKEND- 129
Query: 214 KHVCLILPKKSAVSEYGEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEFNKLTRE 273
+S + + FIPLL S + ++ +L+ KE ++ ++
Sbjct: 130 ---------ESEFEDGQQGFIPLLVNRNSDPSE------KSTFSLNILKAIKETDEEIKK 174
Query: 274 HPYDVKGWLEFADFQDVVGSKESKRGVRLQILEK----------KISILEKAV-ELNPDN 322
+P + W++ ++Q+ + E +R I K K+SILEKA+ E+ +
Sbjct: 175 NPGKARLWIKMCEYQERLLFDEFRRSNSDDIKGKLKIENNSRSVKLSILEKALKEVKGCD 234
Query: 323 EELLLSLMKAYQSRD-GTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRK 381
E+L+S S + + +++E++L++H G LW ++ G S F ++
Sbjct: 235 HEILVSYYLQLGSEEWSKEETNQKFEEVLIEHPGYLNLWMKYAEYFTG-ISEFTFNDCLN 293
Query: 382 MYAHAI----QALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGY 437
M++ Q LS + R+ ++ AI+ L + L D FL C GY
Sbjct: 294 MFSKCFKFLKQKLSDRKSCKERESTDVTSNFEVEEAILHLLIRLCD-FLKNC------GY 346
Query: 438 QELATALFQAEIEFSLFCPSLL--LTEQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKE 495
ELA ++FQA +E F P L + + F FWN D + EE A GW L+ E
Sbjct: 347 YELAWSIFQANMELCYFYPRYLEKKLDSTFFESFSKFWNSDTPKFSEENARGWCNVLDDE 406
Query: 496 EENRQR 501
+ +
Sbjct: 407 SSQQNQ 412
>sp|Q54QP0|NRDE2_DICDI Protein NRDE2 homolog OS=Dictyostelium discoideum GN=nrde2 PE=3 SV=1
Length = 1320
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 1021 LFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFR 1080
LFA+ FE +R G RI+ LFE+A++ T + +++ W+ YI +E+ A+ I++R
Sbjct: 1210 LFAIKFESNRIGAAQRIKSLFEKAIST-TQKHNIIFWKLYIEFEINRGRLK-IAKSIYYR 1267
Query: 1081 AIHACPWSKRLWLDGFL--KLNSILTAKELSDLQEVMRDKELNLR 1123
+I P+SK++WL F KL+ I +E +++ ++ +K + LR
Sbjct: 1268 SIKQLPFSKQIWLLPFTNSKLSLIFNNQEFNEIINLINEKGIRLR 1312
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 144/333 (43%), Gaps = 44/333 (13%)
Query: 191 SKVKSGGRYWS--------------------SKYAALERHKNLKHVCLIL-PKKSAVSEY 229
+K + RY++ +K +E + +K + I P KS E
Sbjct: 262 NKQQINNRYFTKPSSSSSSSSQSQQQLITVITKRKEIEEIEKVKPISNIKDPSKSNDDEI 321
Query: 230 GEDFIPLLGTEMSIEGHHDNSILEESWEDEVLRKTKEFNKLTREHPYDVKGWLEFADFQD 289
I L + ++ E+ E + L+K E NKL ++P +++ W++ FQ+
Sbjct: 322 K--LIVLNENNHDNDDDDNDDDDNETLERKTLKKNSELNKLVEQYPNNIEYWIDLVKFQE 379
Query: 290 VVGSKESKRGV---RLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRW 346
++ R V + + EK++SI ++ NPD+E L + +K ++ W
Sbjct: 380 --NFQQFSRNVNKSKTSMYEKQLSIYRNSLLHNPDSEILTIEYLKLASKLWDQQKVLDLW 437
Query: 347 EKILMQHSGSY-------KLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFR 399
K+L S S KLW+E++ F+ FK+ ++++ I+ + + F+
Sbjct: 438 NKVLSSSSSSSSSSIISEKLWKEYIEFCLSNFNDFKIEKIKETIITIIRKMLVKR-RSFK 496
Query: 400 QVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLL 459
VK + I LE ++ L +L QAG+ E ++Q+ IEF+ F P L
Sbjct: 497 -----VKDYNFMENISNLEESILQFISQLSKLLNQAGFSERVIGIYQSLIEFNCFEPIQL 551
Query: 460 LTEQSKHRL--FEHFWNG-DGARVGEEGALGWS 489
E L F+ +W+ D ++G ++GWS
Sbjct: 552 SNETQATLLKEFKSYWSSLDYPKIGNPNSIGWS 584
>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2
Length = 702
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 16/189 (8%)
Query: 905 IALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLF-NFNVRM--LQRHH 961
I L + AL+EEL +++ ++P ++ +L L+ F +R LQR
Sbjct: 368 IYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRAR 427
Query: 962 KQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSL 1021
K L L+ + + P KLF +++ + R +++ + P V+
Sbjct: 428 KALGLA---------IGMCP-RDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTW 477
Query: 1022 FALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAAR---RIF 1078
A + G R R +FE A+ + +LW+ YI +EV + A + R+
Sbjct: 478 MKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERLL 537
Query: 1079 FRAIHACPW 1087
R H W
Sbjct: 538 ERTQHVKVW 546
>sp|Q8U262|RIFK_PYRFU Riboflavin kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=ribK PE=3 SV=1
Length = 212
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 257 EDEVLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAV 316
E E+L ++E +K+ P + WLE + ++ ES++G + I E+ + LEK
Sbjct: 19 EKEILTTSRELSKMLNVSPQTIVRWLEDLEKDGLIKKSESRKGTLVTITEEGVKFLEKLH 78
Query: 317 E 317
E
Sbjct: 79 E 79
>sp|Q54VF4|Y8236_DICDI TPR-containing protein DDB_G0280363 OS=Dictyostelium discoideum
GN=DDB_G0280363 PE=4 SV=2
Length = 1304
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 265 KEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEE 324
K + K+T PY +GWLE+A ++ G LEK IL+ ++ P NE
Sbjct: 790 KFYRKVTSTQPYISQGWLEYAKMEEDYGR-----------LEKCQKILQLGLKHCPFNES 838
Query: 325 LLLSLMKAYQSRD---GTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRK 381
LL+ ++ + D G L+ + ++ YK WR + E + RK
Sbjct: 839 LLIKGIRHEEKMDNLEGARALLSQ-----LRDQSIYKTWRAVMEGGLLEARAGNIDVARK 893
Query: 382 MYAHAIQ 388
++ + ++
Sbjct: 894 IFKYLMK 900
>sp|G5EG51|NRDE2_CAEEL Nuclear RNAi defective-2 protein OS=Caenorhabditis elegans
GN=nrde-2 PE=1 SV=1
Length = 1270
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 304 ILEKKISILEKAVELNPDNEELLLSLMKAYQSRD-GTDVLIRRWEKILMQHSGSYKLWRE 362
+ E+ +++KA++ + N +L L ++ D + +I ++ + + +W +
Sbjct: 397 LAERHQEMVKKAIKADGRNAKLRLMKIELLIKMDPNSPTIIDDFKNLTITFPHEPMVWIK 456
Query: 363 FLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLV 422
+L +Q + + + +L+ + CI+Q + + L+ + L +
Sbjct: 457 YLDYIQYDSNVYNYKKLKNAFED--------CIRQVTGLTNGTLLSHLNAVNDRPLLRMF 508
Query: 423 DIFLSLCRLEWQ--AGYQELATALFQAEIEFSLFCPSL--LLTEQSKHR--LFEHFWNGD 476
+++ + L+W + + A QA E++ + + SK R E FW
Sbjct: 509 HLWIYIRYLKWMISCAHTPVVLANIQATFEYNFGLADVEKRTSTNSKEREVRLEEFWESG 568
Query: 477 GARVGEEGALGWSAWLEKEEE 497
R+G+EGA+G L++ EE
Sbjct: 569 LPRIGDEGAVGAEKMLKQSEE 589
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,045,976
Number of Sequences: 539616
Number of extensions: 18465149
Number of successful extensions: 94317
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 295
Number of HSP's that attempted gapping in prelim test: 86713
Number of HSP's gapped (non-prelim): 5234
length of query: 1134
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1006
effective length of database: 122,498,611
effective search space: 123233602666
effective search space used: 123233602666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)