Query 001167
Match_columns 1134
No_of_seqs 256 out of 813
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 17:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08424 NRDE-2: NRDE-2, neces 100.0 8.3E-76 1.8E-80 669.2 26.9 313 260-660 1-316 (321)
2 KOG1972 Uncharacterized conser 100.0 1.3E-35 2.8E-40 348.1 30.1 659 306-1129 194-907 (913)
3 KOG1915 Cell cycle control pro 100.0 3.1E-29 6.7E-34 279.9 26.9 311 767-1097 89-548 (677)
4 KOG0495 HAT repeat protein [RN 99.9 8.5E-24 1.8E-28 243.7 30.8 336 767-1124 392-819 (913)
5 KOG1915 Cell cycle control pro 99.9 5.9E-23 1.3E-27 229.9 27.9 300 770-1090 58-439 (677)
6 KOG0495 HAT repeat protein [RN 99.9 4.6E-20 1E-24 213.2 29.9 308 767-1116 532-878 (913)
7 KOG2047 mRNA splicing factor [ 99.8 5.1E-17 1.1E-21 188.3 39.5 285 785-1099 387-703 (835)
8 KOG2047 mRNA splicing factor [ 99.5 1.2E-11 2.6E-16 144.4 30.1 312 767-1097 229-594 (835)
9 KOG1972 Uncharacterized conser 99.4 2.5E-12 5.5E-17 153.3 16.2 342 261-605 486-889 (913)
10 KOG1070 rRNA processing protei 99.4 1.7E-10 3.7E-15 143.9 28.2 251 772-1083 1445-1699(1710)
11 PF05843 Suf: Suppressor of fo 99.1 1.9E-09 4.2E-14 121.6 15.8 141 948-1093 2-145 (280)
12 TIGR02917 PEP_TPR_lipo putativ 99.0 1.6E-06 3.5E-11 111.2 40.2 316 765-1119 377-699 (899)
13 TIGR02917 PEP_TPR_lipo putativ 99.0 9.9E-07 2.1E-11 113.2 38.2 312 764-1116 580-898 (899)
14 PF05843 Suf: Suppressor of fo 98.9 2.8E-08 6E-13 112.2 15.7 141 906-1059 2-146 (280)
15 PRK11788 tetratricopeptide rep 98.8 1.2E-05 2.5E-10 94.5 36.1 299 764-1121 48-350 (389)
16 TIGR00990 3a0801s09 mitochondr 98.8 4.3E-06 9.4E-11 104.8 33.2 170 907-1091 333-503 (615)
17 KOG1914 mRNA cleavage and poly 98.8 2.1E-05 4.6E-10 91.9 34.8 54 781-841 124-186 (656)
18 TIGR00990 3a0801s09 mitochondr 98.8 7.7E-06 1.7E-10 102.6 34.3 255 770-1091 313-578 (615)
19 PRK15174 Vi polysaccharide exp 98.8 1.9E-05 4.2E-10 99.7 36.9 305 764-1098 89-396 (656)
20 KOG1914 mRNA cleavage and poly 98.7 1.1E-05 2.4E-10 94.2 31.2 335 766-1120 34-483 (656)
21 KOG1258 mRNA processing protei 98.7 4.5E-06 9.8E-11 99.2 27.8 290 767-1115 61-392 (577)
22 PF13429 TPR_15: Tetratricopep 98.7 1.6E-07 3.6E-12 105.7 13.6 253 765-1084 22-277 (280)
23 KOG2396 HAT (Half-A-TPR) repea 98.6 5.3E-05 1.2E-09 88.2 31.7 97 728-840 90-187 (568)
24 KOG1070 rRNA processing protei 98.6 2.7E-06 5.8E-11 107.5 21.3 210 905-1123 1458-1668(1710)
25 KOG1258 mRNA processing protei 98.6 0.00023 4.9E-09 85.1 36.0 374 724-1127 60-512 (577)
26 PRK10049 pgaA outer membrane p 98.5 0.00039 8.4E-09 89.6 39.6 319 764-1117 96-455 (765)
27 PRK15174 Vi polysaccharide exp 98.5 0.00023 4.9E-09 90.1 36.2 295 764-1093 55-356 (656)
28 KOG2396 HAT (Half-A-TPR) repea 98.4 1.7E-06 3.6E-11 100.3 12.6 101 966-1068 87-188 (568)
29 PRK11447 cellulose synthase su 98.4 0.0006 1.3E-08 91.8 38.1 315 759-1093 36-423 (1157)
30 PRK11447 cellulose synthase su 98.3 0.00058 1.3E-08 92.0 35.9 53 764-816 364-416 (1157)
31 PF13429 TPR_15: Tetratricopep 98.3 3.7E-06 8E-11 94.8 12.8 247 781-1097 6-256 (280)
32 TIGR00540 hemY_coli hemY prote 98.3 0.0019 4.2E-08 77.1 34.3 266 762-1090 95-372 (409)
33 PRK10747 putative protoheme IX 98.2 0.0021 4.5E-08 76.5 32.5 245 764-1046 131-389 (398)
34 PRK10747 putative protoheme IX 98.2 0.0043 9.3E-08 73.9 34.3 266 764-1090 97-363 (398)
35 TIGR00540 hemY_coli hemY prote 98.1 0.0015 3.3E-08 77.9 29.5 251 764-1046 131-398 (409)
36 PRK10049 pgaA outer membrane p 98.1 0.0034 7.4E-08 81.0 33.6 308 764-1091 129-463 (765)
37 PRK11788 tetratricopeptide rep 98.1 0.0072 1.6E-07 71.0 33.7 237 792-1091 42-285 (389)
38 PLN03218 maturation of RBCL 1; 98.0 0.014 3.1E-07 77.0 38.0 331 765-1130 451-795 (1060)
39 TIGR02521 type_IV_pilW type IV 98.0 0.003 6.6E-08 66.9 26.1 189 912-1115 38-229 (234)
40 KOG0128 RNA-binding protein SA 98.0 0.0011 2.3E-08 81.6 24.2 259 777-1097 105-389 (881)
41 PRK09782 bacteriophage N4 rece 97.9 0.011 2.4E-07 77.6 33.6 149 262-452 62-212 (987)
42 PLN03081 pentatricopeptide (PP 97.9 0.0031 6.6E-08 80.6 28.3 304 770-1122 243-561 (697)
43 KOG4626 O-linked N-acetylgluco 97.9 0.0029 6.2E-08 75.4 23.9 309 758-1102 123-465 (966)
44 KOG0547 Translocase of outer m 97.8 0.0042 9.2E-08 72.5 24.6 233 764-1065 339-582 (606)
45 KOG4626 O-linked N-acetylgluco 97.8 0.0053 1.2E-07 73.2 24.8 168 919-1103 334-504 (966)
46 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.0018 3.8E-08 74.7 20.0 151 920-1087 176-334 (660)
47 TIGR02521 type_IV_pilW type IV 97.8 0.0057 1.2E-07 64.8 23.4 185 766-1011 46-230 (234)
48 PLN03218 maturation of RBCL 1; 97.8 0.044 9.6E-07 72.6 35.9 284 766-1086 487-785 (1060)
49 COG5191 Uncharacterized conser 97.8 0.00017 3.7E-09 79.5 11.3 94 972-1067 95-189 (435)
50 PRK09782 bacteriophage N4 rece 97.8 0.012 2.5E-07 77.4 30.2 157 917-1089 588-745 (987)
51 PLN03077 Protein ECB2; Provisi 97.6 0.027 5.8E-07 73.8 30.4 306 766-1123 404-725 (857)
52 PRK12370 invasion protein regu 97.5 0.017 3.6E-07 71.9 25.9 155 920-1090 319-476 (553)
53 KOG0547 Translocase of outer m 97.5 0.0071 1.5E-07 70.8 20.5 162 910-1086 399-568 (606)
54 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.0054 1.2E-07 70.9 18.8 223 776-1040 293-524 (660)
55 PRK12370 invasion protein regu 97.5 0.028 6E-07 70.0 26.4 246 767-1084 277-535 (553)
56 KOG2002 TPR-containing nuclear 97.4 0.035 7.5E-07 69.9 26.3 292 767-1086 146-483 (1018)
57 COG3063 PilF Tfp pilus assembl 97.4 0.01 2.2E-07 63.9 18.1 173 763-1030 47-220 (250)
58 KOG2002 TPR-containing nuclear 97.3 0.01 2.2E-07 74.5 19.7 302 757-1084 348-675 (1018)
59 KOG2076 RNA polymerase III tra 97.2 0.28 6.1E-06 61.7 29.8 136 985-1124 415-561 (895)
60 PLN03081 pentatricopeptide (PP 97.1 0.18 4E-06 64.5 28.7 274 767-1084 275-557 (697)
61 KOG1174 Anaphase-promoting com 97.0 1 2.2E-05 52.4 30.7 291 778-1103 225-518 (564)
62 PF08424 NRDE-2: NRDE-2, neces 97.0 0.0079 1.7E-07 69.5 14.2 112 972-1086 7-133 (321)
63 COG2956 Predicted N-acetylgluc 97.0 0.77 1.7E-05 52.0 28.3 269 763-1092 47-319 (389)
64 KOG0128 RNA-binding protein SA 97.0 0.21 4.5E-06 62.3 26.0 68 768-840 167-241 (881)
65 KOG1156 N-terminal acetyltrans 97.0 0.3 6.6E-06 59.5 26.7 303 764-1098 88-414 (700)
66 PLN03077 Protein ECB2; Provisi 96.9 0.29 6.2E-06 64.3 28.8 28 430-458 160-187 (857)
67 PRK11189 lipoprotein NlpI; Pro 96.9 0.44 9.4E-06 54.5 26.6 164 918-1099 111-280 (296)
68 KOG2003 TPR repeat-containing 96.9 0.23 5E-06 57.7 23.5 214 873-1115 502-719 (840)
69 COG3063 PilF Tfp pilus assembl 96.9 0.07 1.5E-06 57.7 18.3 132 962-1096 47-180 (250)
70 smart00386 HAT HAT (Half-A-TPR 96.6 0.0022 4.7E-08 47.1 3.5 31 1033-1065 2-32 (33)
71 TIGR02552 LcrH_SycD type III s 96.6 0.041 8.9E-07 54.4 13.7 116 972-1091 5-121 (135)
72 PRK14574 hmsH outer membrane p 96.2 6.6 0.00014 51.2 36.2 124 965-1093 342-488 (822)
73 COG5191 Uncharacterized conser 96.2 0.0045 9.7E-08 68.6 4.2 88 1007-1097 96-184 (435)
74 PRK15359 type III secretion sy 96.2 0.088 1.9E-06 53.5 13.3 114 971-1092 14-129 (144)
75 COG3071 HemY Uncharacterized e 96.1 4 8.6E-05 47.7 27.8 228 781-1046 149-389 (400)
76 KOG1126 DNA-binding cell divis 96.1 0.84 1.8E-05 56.0 23.0 40 777-816 345-384 (638)
77 KOG1173 Anaphase-promoting com 96.1 0.77 1.7E-05 55.4 22.2 185 878-1088 329-522 (611)
78 KOG1155 Anaphase-promoting com 96.1 4.2 9.2E-05 48.3 27.6 268 790-1089 169-466 (559)
79 PRK14574 hmsH outer membrane p 96.1 7.7 0.00017 50.6 33.7 299 769-1091 187-520 (822)
80 PRK10370 formate-dependent nit 96.0 0.25 5.3E-06 53.2 16.2 118 967-1087 56-176 (198)
81 KOG1129 TPR repeat-containing 95.9 0.27 5.8E-06 55.4 16.1 188 765-1015 270-460 (478)
82 KOG1126 DNA-binding cell divis 95.9 0.28 6.1E-06 59.9 17.5 46 772-817 408-453 (638)
83 cd05804 StaR_like StaR_like; a 95.8 4.9 0.00011 46.5 28.9 258 767-1085 22-294 (355)
84 KOG4162 Predicted calmodulin-b 95.8 2 4.3E-05 53.6 24.7 296 757-1089 484-788 (799)
85 PRK15179 Vi polysaccharide bio 95.8 0.45 9.8E-06 60.5 20.1 136 947-1090 86-224 (694)
86 PF08311 Mad3_BUB1_I: Mad3/BUB 95.7 0.15 3.3E-06 50.8 12.4 107 968-1082 3-126 (126)
87 TIGR03302 OM_YfiO outer membra 95.5 1.5 3.2E-05 47.8 20.5 91 917-1015 45-146 (235)
88 PF14559 TPR_19: Tetratricopep 95.3 0.036 7.8E-07 48.1 5.6 51 766-816 6-56 (68)
89 smart00386 HAT HAT (Half-A-TPR 95.2 0.037 8E-07 40.4 4.6 31 1069-1099 1-31 (33)
90 cd05804 StaR_like StaR_like; a 95.2 1.6 3.4E-05 50.6 20.5 101 978-1082 108-213 (355)
91 KOG1125 TPR repeat-containing 95.1 0.91 2E-05 54.9 17.9 185 767-984 301-498 (579)
92 KOG2076 RNA polymerase III tra 95.1 1.1 2.4E-05 56.6 19.2 159 912-1086 146-311 (895)
93 PRK11189 lipoprotein NlpI; Pro 95.0 1.7 3.8E-05 49.6 19.9 114 964-1084 78-194 (296)
94 PF13432 TPR_16: Tetratricopep 95.0 0.041 8.9E-07 47.4 4.9 52 765-816 11-62 (65)
95 cd00189 TPR Tetratricopeptide 94.9 0.34 7.4E-06 42.3 11.0 85 998-1086 14-99 (100)
96 TIGR03302 OM_YfiO outer membra 94.8 2.7 5.8E-05 45.8 19.8 123 964-1089 47-200 (235)
97 KOG1173 Anaphase-promoting com 94.7 2.6 5.7E-05 51.0 20.3 169 907-1090 246-415 (611)
98 KOG2003 TPR repeat-containing 94.7 5.9 0.00013 46.6 22.3 136 913-1064 567-704 (840)
99 PRK10370 formate-dependent nit 94.7 0.52 1.1E-05 50.7 13.6 123 305-458 55-177 (198)
100 KOG3060 Uncharacterized conser 94.5 1.8 3.9E-05 47.8 16.9 142 906-1061 87-233 (289)
101 KOG2376 Signal recognition par 94.2 18 0.0004 44.3 29.5 206 906-1128 308-530 (652)
102 PLN02789 farnesyltranstransfer 94.2 9.7 0.00021 44.2 23.4 166 914-1090 81-256 (320)
103 PF12569 NARP1: NMDA receptor- 94.1 8.6 0.00019 47.5 23.7 218 766-1014 53-292 (517)
104 PF13371 TPR_9: Tetratricopept 93.9 0.095 2.1E-06 46.1 5.0 53 765-817 9-61 (73)
105 TIGR02552 LcrH_SycD type III s 93.7 1.9 4E-05 42.5 14.5 93 964-1059 31-124 (135)
106 PF13428 TPR_14: Tetratricopep 93.6 0.16 3.5E-06 40.6 5.3 42 786-835 2-43 (44)
107 PF02184 HAT: HAT (Half-A-TPR) 93.5 0.078 1.7E-06 39.5 2.9 29 1034-1065 3-31 (32)
108 PRK15179 Vi polysaccharide bio 93.4 5.3 0.00011 51.1 21.0 114 975-1093 77-192 (694)
109 PF13432 TPR_16: Tetratricopep 93.2 0.25 5.5E-06 42.4 6.4 54 1032-1088 11-64 (65)
110 PLN02789 farnesyltranstransfer 93.1 15 0.00033 42.6 22.5 165 919-1096 51-224 (320)
111 PF13371 TPR_9: Tetratricopept 93.1 0.4 8.6E-06 42.1 7.6 59 1032-1093 9-67 (73)
112 COG4783 Putative Zn-dependent 93.0 2.9 6.4E-05 49.9 16.3 137 764-935 319-455 (484)
113 PF14559 TPR_19: Tetratricopep 92.9 0.18 3.8E-06 43.7 5.0 58 1032-1092 5-62 (68)
114 KOG1127 TPR repeat-containing 92.6 34 0.00075 44.5 25.4 72 767-845 866-939 (1238)
115 PF09976 TPR_21: Tetratricopep 92.2 6.2 0.00013 39.9 15.9 85 764-859 24-111 (145)
116 KOG1840 Kinesin light chain [C 92.1 37 0.00081 41.9 27.8 259 781-1084 195-479 (508)
117 PF13428 TPR_14: Tetratricopep 91.9 0.35 7.5E-06 38.6 5.1 39 1055-1094 2-40 (44)
118 KOG1127 TPR repeat-containing 91.8 28 0.0006 45.3 23.3 50 767-816 578-627 (1238)
119 cd00189 TPR Tetratricopeptide 91.7 3.2 7E-05 35.9 11.9 90 914-1014 9-98 (100)
120 PRK10153 DNA-binding transcrip 91.6 3.8 8.3E-05 50.6 16.0 122 965-1092 357-490 (517)
121 PRK15359 type III secretion sy 90.9 7.7 0.00017 39.3 15.1 94 964-1061 38-133 (144)
122 KOG1155 Anaphase-promoting com 90.9 14 0.00031 44.1 18.5 119 971-1092 248-401 (559)
123 PLN03088 SGT1, suppressor of 90.6 3.7 8E-05 48.3 14.1 52 964-1015 16-67 (356)
124 PF13414 TPR_11: TPR repeat; P 90.5 0.43 9.2E-06 41.4 4.7 53 764-816 16-69 (69)
125 PF02184 HAT: HAT (Half-A-TPR) 90.4 0.38 8.2E-06 36.0 3.5 30 999-1028 2-31 (32)
126 KOG1156 N-terminal acetyltrans 90.4 20 0.00043 44.5 19.7 65 767-839 57-121 (700)
127 KOG1129 TPR repeat-containing 90.1 23 0.00049 40.7 18.5 63 1034-1097 374-438 (478)
128 COG4783 Putative Zn-dependent 90.0 44 0.00095 40.4 21.8 155 905-1092 306-462 (484)
129 PLN03088 SGT1, suppressor of 89.5 4 8.8E-05 48.0 13.2 95 995-1093 13-108 (356)
130 PF09295 ChAPs: ChAPs (Chs5p-A 89.1 5.8 0.00012 47.3 14.0 94 997-1096 182-275 (395)
131 TIGR02795 tol_pal_ybgF tol-pal 88.4 11 0.00023 35.7 13.2 97 911-1015 8-107 (119)
132 KOG3060 Uncharacterized conser 87.3 54 0.0012 36.6 22.6 152 919-1086 66-222 (289)
133 PF08311 Mad3_BUB1_I: Mad3/BUB 87.3 3.2 6.9E-05 41.4 8.9 46 767-812 79-126 (126)
134 PF09976 TPR_21: Tetratricopep 87.2 34 0.00073 34.5 16.6 114 964-1082 25-145 (145)
135 PRK11906 transcriptional regul 87.1 43 0.00094 40.4 19.3 125 966-1099 320-449 (458)
136 TIGR02795 tol_pal_ybgF tol-pal 86.7 15 0.00034 34.5 13.2 94 995-1090 13-111 (119)
137 PRK11906 transcriptional regul 86.4 6.9 0.00015 47.0 12.3 119 965-1088 273-405 (458)
138 PF13431 TPR_17: Tetratricopep 85.9 1 2.2E-05 34.1 3.5 33 774-806 2-34 (34)
139 PRK04841 transcriptional regul 84.8 1.5E+02 0.0032 39.3 28.1 277 765-1090 466-766 (903)
140 PRK10153 DNA-binding transcrip 84.8 34 0.00074 42.4 17.9 152 920-1083 357-513 (517)
141 PRK15363 pathogenicity island 84.7 12 0.00026 38.8 11.6 53 764-816 48-100 (157)
142 PF10300 DUF3808: Protein of u 83.8 35 0.00075 41.8 17.3 97 998-1097 247-347 (468)
143 PRK02603 photosystem I assembl 83.7 29 0.00062 36.1 14.5 81 910-998 40-120 (172)
144 PF09295 ChAPs: ChAPs (Chs5p-A 83.6 13 0.00029 44.2 13.2 113 725-862 185-297 (395)
145 PRK14720 transcript cleavage f 83.6 71 0.0015 42.1 20.4 210 764-1015 44-254 (906)
146 PRK15363 pathogenicity island 82.8 31 0.00067 35.8 13.7 91 990-1085 41-133 (157)
147 PF12895 Apc3: Anaphase-promot 82.5 4 8.6E-05 37.0 6.6 77 766-857 4-82 (84)
148 smart00777 Mad3_BUB1_I Mad3/BU 82.4 14 0.0003 36.9 10.7 105 969-1081 4-125 (125)
149 PF13414 TPR_11: TPR repeat; P 81.5 6 0.00013 34.1 7.1 52 1032-1086 17-69 (69)
150 KOG1125 TPR repeat-containing 80.9 70 0.0015 39.4 17.6 155 919-1087 299-496 (579)
151 COG4235 Cytochrome c biogenesi 79.9 37 0.0008 38.6 14.2 61 773-841 144-204 (287)
152 PRK02603 photosystem I assembl 79.8 41 0.00088 34.9 13.9 18 965-982 50-67 (172)
153 KOG1840 Kinesin light chain [C 77.5 1.9E+02 0.0042 35.8 20.4 225 781-1011 237-477 (508)
154 PF12569 NARP1: NMDA receptor- 77.2 2E+02 0.0043 35.8 31.8 256 767-1049 20-293 (517)
155 COG2956 Predicted N-acetylgluc 76.3 1.6E+02 0.0034 34.2 25.3 123 968-1093 159-287 (389)
156 KOG3785 Uncharacterized conser 76.2 1.5E+02 0.0033 34.5 17.5 29 783-813 57-85 (557)
157 PF14938 SNAP: Soluble NSF att 76.0 81 0.0017 35.7 16.0 175 785-983 55-229 (282)
158 PF07719 TPR_2: Tetratricopept 73.6 7.1 0.00015 28.5 4.5 31 786-816 2-32 (34)
159 KOG0553 TPR repeat-containing 72.7 25 0.00055 39.9 10.3 143 965-1117 96-244 (304)
160 PF13181 TPR_8: Tetratricopept 70.3 8.8 0.00019 28.2 4.4 31 786-816 2-32 (34)
161 COG4235 Cytochrome c biogenesi 69.8 77 0.0017 36.1 13.4 100 918-1025 169-268 (287)
162 CHL00033 ycf3 photosystem I as 69.7 81 0.0018 32.4 13.0 65 991-1059 42-111 (168)
163 PRK10803 tol-pal system protei 69.2 83 0.0018 35.5 13.7 58 1032-1090 194-252 (263)
164 PRK10803 tol-pal system protei 68.9 82 0.0018 35.5 13.6 82 964-1046 157-245 (263)
165 PF07719 TPR_2: Tetratricopept 67.9 14 0.0003 27.0 5.0 32 1056-1088 3-34 (34)
166 PF12895 Apc3: Anaphase-promot 67.8 15 0.00032 33.3 6.2 79 998-1081 3-84 (84)
167 PF13525 YfiO: Outer membrane 65.1 1.2E+02 0.0026 32.5 13.6 123 964-1121 19-146 (203)
168 KOG1128 Uncharacterized conser 65.0 45 0.00097 42.1 11.1 115 964-1084 499-616 (777)
169 PF10300 DUF3808: Protein of u 64.7 1.8E+02 0.0039 35.7 16.5 123 919-1046 202-333 (468)
170 PF04733 Coatomer_E: Coatomer 64.1 79 0.0017 36.2 12.5 54 1034-1090 183-236 (290)
171 COG3898 Uncharacterized membra 62.9 3.3E+02 0.0071 32.5 24.0 15 798-812 133-147 (531)
172 PF03704 BTAD: Bacterial trans 62.3 13 0.00029 37.2 5.3 52 765-816 76-127 (146)
173 PF04733 Coatomer_E: Coatomer 61.3 2E+02 0.0043 33.0 15.0 120 965-1089 146-270 (290)
174 smart00777 Mad3_BUB1_I Mad3/BU 60.3 54 0.0012 32.8 8.9 62 1002-1063 3-78 (125)
175 PF13176 TPR_7: Tetratricopept 59.1 17 0.00036 27.6 4.0 28 788-815 2-29 (36)
176 PF15297 CKAP2_C: Cytoskeleton 58.2 28 0.00061 40.4 7.3 71 727-816 101-171 (353)
177 KOG0890 Protein kinase of the 56.6 8.8E+02 0.019 35.5 26.7 60 783-858 1668-1727(2382)
178 COG5010 TadD Flp pilus assembl 56.6 3.3E+02 0.0072 30.6 16.4 152 910-1078 71-225 (257)
179 PF13431 TPR_17: Tetratricopep 56.5 19 0.0004 27.2 3.9 32 973-1004 2-33 (34)
180 PF03704 BTAD: Bacterial trans 53.5 1.9E+02 0.0041 28.8 12.0 49 963-1011 75-123 (146)
181 PRK04841 transcriptional regul 53.1 6.7E+02 0.015 33.1 28.7 173 910-1086 536-722 (903)
182 PF06552 TOM20_plant: Plant sp 53.0 1.6E+02 0.0034 31.5 11.2 96 264-360 11-117 (186)
183 smart00028 TPR Tetratricopepti 52.1 23 0.0005 23.8 3.7 31 786-816 2-32 (34)
184 KOG1174 Anaphase-promoting com 48.1 5.7E+02 0.012 30.8 15.7 101 945-1049 230-331 (564)
185 CHL00033 ycf3 photosystem I as 47.4 3.3E+02 0.0071 27.9 14.5 76 910-993 40-115 (168)
186 PRK15331 chaperone protein Sic 47.4 1.3E+02 0.0027 31.7 9.4 54 763-816 49-102 (165)
187 KOG1128 Uncharacterized conser 45.0 8E+02 0.017 31.6 17.7 131 919-1062 533-675 (777)
188 COG1729 Uncharacterized protei 44.0 2E+02 0.0044 32.5 11.0 22 964-985 155-176 (262)
189 PF13525 YfiO: Outer membrane 42.8 4.5E+02 0.0097 28.1 15.2 54 791-857 11-66 (203)
190 KOG0553 TPR repeat-containing 42.3 2.7E+02 0.0059 32.0 11.7 117 919-1046 95-214 (304)
191 PF00515 TPR_1: Tetratricopept 42.1 56 0.0012 23.8 4.5 31 786-816 2-32 (34)
192 PF13512 TPR_18: Tetratricopep 42.0 2.9E+02 0.0062 28.3 10.9 66 1031-1099 23-95 (142)
193 PF12854 PPR_1: PPR repeat 41.7 45 0.00098 25.1 3.9 27 784-810 6-32 (34)
194 PF02259 FAT: FAT domain; Int 41.1 5.2E+02 0.011 29.5 14.7 70 779-858 140-209 (352)
195 PRK14720 transcript cleavage f 40.8 1E+03 0.023 31.8 25.9 36 781-816 27-62 (906)
196 COG4700 Uncharacterized protei 40.8 5E+02 0.011 28.1 13.9 113 968-1086 107-228 (251)
197 KOG2053 Mitochondrial inherita 40.3 1E+03 0.022 31.5 23.5 163 966-1131 93-272 (932)
198 PF13424 TPR_12: Tetratricopep 39.8 1.9E+02 0.0041 25.3 8.5 67 910-980 10-76 (78)
199 COG1729 Uncharacterized protei 39.4 3.7E+02 0.008 30.4 12.2 97 912-1016 148-247 (262)
200 KOG3824 Huntingtin interacting 38.5 47 0.001 37.9 5.0 60 1027-1089 125-184 (472)
201 PF13512 TPR_18: Tetratricopep 37.9 4.2E+02 0.0091 27.2 11.3 61 917-985 22-82 (142)
202 PF14938 SNAP: Soluble NSF att 37.1 6.5E+02 0.014 28.3 17.7 135 919-1059 88-238 (282)
203 PF12688 TPR_5: Tetratrico pep 36.3 4.4E+02 0.0095 26.1 12.9 83 913-1003 9-94 (120)
204 PF12688 TPR_5: Tetratrico pep 36.2 4.4E+02 0.0094 26.1 11.0 53 1032-1087 15-70 (120)
205 COG5010 TadD Flp pilus assembl 35.7 6.9E+02 0.015 28.2 14.9 116 972-1092 88-205 (257)
206 KOG3617 WD40 and TPR repeat-co 35.6 1.2E+03 0.025 30.8 24.0 30 906-935 913-942 (1416)
207 PF13424 TPR_12: Tetratricopep 35.4 46 0.001 29.3 3.7 32 785-816 5-36 (78)
208 KOG0543 FKBP-type peptidyl-pro 33.5 4.8E+02 0.011 31.2 12.3 102 913-1015 216-322 (397)
209 PF14561 TPR_20: Tetratricopep 32.3 2.8E+02 0.006 25.9 8.5 77 264-351 8-86 (90)
210 KOG1847 mRNA splicing factor [ 31.7 28 0.00061 42.8 2.1 14 96-109 720-733 (878)
211 PF00515 TPR_1: Tetratricopept 31.3 1.2E+02 0.0025 22.1 4.8 19 1069-1087 15-33 (34)
212 PF13174 TPR_6: Tetratricopept 31.0 96 0.0021 22.0 4.2 20 1069-1088 14-33 (33)
213 KOG3824 Huntingtin interacting 30.8 84 0.0018 35.9 5.4 55 764-818 129-183 (472)
214 PF13174 TPR_6: Tetratricopept 29.9 73 0.0016 22.7 3.4 26 791-816 6-31 (33)
215 KOG2376 Signal recognition par 29.0 1.3E+03 0.028 29.2 30.4 82 1001-1084 358-446 (652)
216 PLN03098 LPA1 LOW PSII ACCUMUL 28.7 2.3E+02 0.0051 34.4 8.9 48 766-813 90-140 (453)
217 KOG0550 Molecular chaperone (D 27.9 1.2E+03 0.025 28.4 16.2 266 769-1050 67-353 (486)
218 PF13374 TPR_10: Tetratricopep 27.2 1.3E+02 0.0028 22.6 4.5 31 786-816 3-33 (42)
219 PRK15331 chaperone protein Sic 27.1 4.5E+02 0.0098 27.7 9.7 82 964-1046 51-133 (165)
220 KOG0890 Protein kinase of the 26.5 2.4E+03 0.051 31.6 21.7 72 910-982 1707-1787(2382)
221 PF13176 TPR_7: Tetratricopept 24.3 1.3E+02 0.0027 22.8 3.9 28 425-452 2-29 (36)
222 PF13041 PPR_2: PPR repeat fam 24.2 1.4E+02 0.0029 24.1 4.4 31 784-814 2-32 (50)
223 PF09797 NatB_MDM20: N-acetylt 23.6 6.3E+02 0.014 29.7 11.5 87 304-392 198-291 (365)
224 KOG2422 Uncharacterized conser 22.2 40 0.00087 41.5 1.1 44 271-318 277-320 (665)
225 PF13181 TPR_8: Tetratricopept 21.8 1.9E+02 0.0041 20.9 4.4 29 424-452 3-31 (34)
226 PLN03098 LPA1 LOW PSII ACCUMUL 21.1 6.8E+02 0.015 30.6 10.9 89 1032-1125 89-181 (453)
227 cd04439 DEP_1_P-Rex DEP (Dishe 20.6 1E+02 0.0022 28.5 3.1 28 431-458 37-67 (81)
228 KOG2471 TPR repeat-containing 20.1 4.7E+02 0.01 32.1 9.1 138 982-1124 238-404 (696)
229 PF03790 KNOX1: KNOX1 domain ; 20.0 3E+02 0.0065 22.7 5.2 41 312-353 3-43 (45)
No 1
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=100.00 E-value=8.3e-76 Score=669.20 Aligned_cols=313 Identities=36% Similarity=0.713 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHhhhhhhcccccc-cchhhHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhccCC
Q 001167 260 VLRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESK-RGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDG 338 (1134)
Q Consensus 260 ~~~r~~eln~~v~e~P~Di~~Wl~li~~Qd~~~~~~~~-k~~~~~~~E~KlsilekAL~~~p~~~~Lll~~l~~~~~~w~ 338 (1134)
+++|+++||++|++||+||++||+||+|||++...+.. +..+.+++|+|||||||||++||++++|+++||++|.++|+
T Consensus 1 i~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 1 IRKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD 80 (321)
T ss_pred CchHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999999877654 66788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCCCCCCChHHHHHH
Q 001167 339 TDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLE 418 (1134)
Q Consensus 339 ~~~l~~~W~~~l~~~p~~~~LW~~yL~~~q~~~~~F~~~~~~~~y~~~l~~l~~~~~~~~~q~~~~~~~~~~~~~~~~~e 418 (1134)
+++|.++|++++++||+++.||++||+|+|++|++|+|++|+++|.+||++|+..+.+. ...+++.+++|
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~----------~~~~~~~~~~e 150 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR----------MTSHPDLPELE 150 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc----------cccccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999875332 12456788999
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhccCCccccchh--HHHHHhhhhhccCCCcCCCCCccchhHHHHhhH
Q 001167 419 LGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLLTEQ--SKHRLFEHFWNGDGARVGEEGALGWSAWLEKEE 496 (1134)
Q Consensus 419 ~~~l~if~r~~~fl~qaG~~E~Ava~~QA~lE~n~f~P~~~~~~~--~~~~~Fe~FWeS~~pRiGE~gA~GW~~~~~~~~ 496 (1134)
+.||+||+|+|+|++||||+|+|||+|||+||||||+|..+.+.. +++++|++|||||+|||||+||+||++|+++++
T Consensus 151 ~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS~vpRiGE~gA~GW~~~~~~~~ 230 (321)
T PF08424_consen 151 EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWESEVPRIGEPGAKGWRKWMEQGE 230 (321)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCcCCCCCCCCCcchhhhhhcccc
Confidence 999999999999999999999999999999999999999976543 889999999999999999999999999997542
Q ss_pred HHHHhhhhhccccccCCCCCCCCCCCCccCCCCCCCCcccCCCCcchHHHHHHHhhhcccchhHHHHHhhcccccccccc
Q 001167 497 ENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDNVSAEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANA 576 (1134)
Q Consensus 497 ~~~q~~~~~~~~~~~~~gg~~~~~~p~~k~~~~~~~~~~~~~~~~~~e~e~~e~e~~~~e~d~~~~~~~lg~~~d~~~~~ 576 (1134)
+ +.+. |. +. .... .
T Consensus 231 ~----------------~~~~----~~----------------~~--------~~~~-~--------------------- 244 (321)
T PF08424_consen 231 E----------------GPQP----PE----------------PQ--------EEEP-E--------------------- 244 (321)
T ss_pred c----------------ccCC----Cc----------------cc--------cccc-c---------------------
Confidence 1 1100 00 00 0000 0
Q ss_pred cccCcchHhhHHHHHhcccccCcccCCCCCCCCCCCCCCCCccccCCCceeEeccccchhcccCChHHHHHHHHHHHHhh
Q 001167 577 EVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLSDATEDGEADEQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFF 656 (1134)
Q Consensus 577 ~~k~~~~~~~W~~~E~~r~~~~~lP~R~~~~~~~~~~~~~~~~~ddp~RvVlf~DI~~~Lf~l~s~~~~~~Li~~FL~F~ 656 (1134)
.+..+|+.|...|+.|+..+|||+|+.+ +++||||||||+|+||+++||.+++++++.+|+++||.||
T Consensus 245 --~~~~~~~~W~~~E~~r~~~~~lP~R~~d----------e~~~dDp~RvVlf~DI~~~L~~l~~~~~~~~L~~~fl~f~ 312 (321)
T PF08424_consen 245 --QSEDPWESWAEVERSRDANHWLPARTMD----------EDDEDDPFRVVLFSDIEPFLFRLPSPENKLELVDAFLQFL 312 (321)
T ss_pred --cchhHHHHHHHHHHhhHHhhcCCCCCCC----------CcccCCcccccCHHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 0013899999999999999999999843 5678899999999999999999999999999999999999
Q ss_pred CCCC
Q 001167 657 GGKV 660 (1134)
Q Consensus 657 Glpl 660 (1134)
|+|+
T Consensus 313 glp~ 316 (321)
T PF08424_consen 313 GLPP 316 (321)
T ss_pred CCCC
Confidence 9753
No 2
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=348.05 Aligned_cols=659 Identities=16% Similarity=0.128 Sum_probs=362.9
Q ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcccccccchhHHHHHH
Q 001167 306 EKKISILEKAVE--LNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMY 383 (1134)
Q Consensus 306 E~KlsilekAL~--~~p~~~~Lll~~l~~~~~~w~~~~l~~~W~~~l~~~p~~~~LW~~yL~~~q~~~~~F~~~~~~~~y 383 (1134)
.-+.+|+++++. ++|++.+|.-.|...|...|+..++.++.+++|..||+.+.||..|++++|+. +.|+..+|..++
T Consensus 194 ~ae~si~~kd~~~~~~~~~q~l~sly~h~~~~~~q~~Ev~rkfe~~l~~nP~~ltlw~~~a~~~~g~-~~~~~~~~l~~~ 272 (913)
T KOG1972|consen 194 DAEDSILGKDGNEIGLANQQRLYSLYEHEGSLESQDDEVKRKFEKVLIENPKRLTLWMKYAEYFTGI-SECTFNDCLNAM 272 (913)
T ss_pred chhhhhhhhhhhhhccchHHHHHHHHHhccchhhhHHHHHHHHHhhhhcCchhhhHHHHHhhhccch-HHHHHHHHHHhc
Confidence 346677777776 78999999999999999999999999999999999999999999999999997 455555554444
Q ss_pred HHHH-HHHHHHHHHHhHhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhccCCcccc-c
Q 001167 384 AHAI-QALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSLLL-T 461 (1134)
Q Consensus 384 ~~~l-~~l~~~~~~~~~q~~~~~~~~~~~~~~~~~e~~~l~if~r~~~fl~qaG~~E~Ava~~QA~lE~n~f~P~~~~-~ 461 (1134)
.+|- ....+. + ++. +..... ......++.+|+.|.+++.+.||.-.++|++||-||+||+.|.... +
T Consensus 273 de~s~fr~~~~----~--De~---~~k~i~--~~d~~~~~~~fh~cir~~~~lG~l~Wmia~ira~mElnf~~~~~e~~~ 341 (913)
T KOG1972|consen 273 DENSKFRKQGL----S--DEK---PSKFIK--STDVTSELADFHLCIRPDPDLGYLAWMIAIIRANMELNFKLDNFERVP 341 (913)
T ss_pred chhhhhhhccc----C--ccc---cceeee--ccchHHHHHHHHHHhccCCCcchHHHHHHHHhccccccccccchhhee
Confidence 4433 322111 0 000 000111 0111237888999999999999999999999999999999998753 3
Q ss_pred -hhHHHHHhhhhhccCCCcCCCCCccchhHHHHhhHHHHHhhhhhccccccCCCCCCCCCCCCccCCCCCCCCcccCCCC
Q 001167 462 -EQSKHRLFEHFWNGDGARVGEEGALGWSAWLEKEEENRQRIVKEETSHDNEKGGWTGWSEPISKSKGNSTNSEELGDDN 540 (1134)
Q Consensus 462 -~~~~~~~Fe~FWeS~~pRiGE~gA~GW~~~~~~~~~~~q~~~~~~~~~~~~~gg~~~~~~p~~k~~~~~~~~~~~~~~~ 540 (1134)
..+...+|..||+| +||+|+++++||...-...
T Consensus 342 ~~sgreksl~~Fwes-~pr~g~~~~~~w~qvE~~~--------------------------------------------- 375 (913)
T KOG1972|consen 342 LGSGREKSLLRFWES-TPRFGSENARGWLQVEIDI--------------------------------------------- 375 (913)
T ss_pred ccchhHHHHHHHHhh-ccccccchhhHHHHHHHHH---------------------------------------------
Confidence 35678889999999 9999999999999732110
Q ss_pred cchHHHHHHHhhhcccchhHHHHHhhcccccccccccccCcchHhhHHHHHhcccccCcccCCCCCCCCCCCCCCCCccc
Q 001167 541 VSAEEAEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDHWMPVHSEAGIPLSDATEDGEAD 620 (1134)
Q Consensus 541 ~~~e~e~~e~e~~~~e~d~~~~~~~lg~~~d~~~~~~~k~~~~~~~W~~~E~~r~~~~~lP~R~~~~~~~~~~~~~~~~~ 620 (1134)
|...+ ++..- ++--.|+.+++--+. -|.|.=. . -.+-
T Consensus 376 ------d~s~c--------------l~~~~-----------dv~l~~~nv~k~~mN---~~~r~C~--~-------~~~v 412 (913)
T KOG1972|consen 376 ------DFSLC--------------LRAKS-----------DVRLWYANVAKNEMN---PPPRSCR--K-------LSGV 412 (913)
T ss_pred ------HHHHh--------------hhhhh-----------hhhhhhHHHHHhhcC---CCchhhh--h-------hhcc
Confidence 00000 11100 122334444444222 1222110 0 1124
Q ss_pred cCCCceeEeccccchhcccCChHHHHHHHHHHHHhhCCCCCC-CccCCCCcccccccccccCcccccccCCCCCCCCCCC
Q 001167 621 EQLLKVIVYEDVREYLFSLSSEEARLSLLYQFIHFFGGKVSQ-GICTNSSSWNENLLTLETLPDFLSESLGKIDDDPAKT 699 (1134)
Q Consensus 621 ddp~RvVlf~DI~~~Lf~l~s~~~~~~Li~~FL~F~Glplp~-~~~s~~~~~~d~~l~~e~~~~~~~~~~~~~~~~~~~~ 699 (1134)
||+.|+.+|+||..+.+++.....-..+=+.++.||+.++-+ ....++..-+..+..-..+ .
T Consensus 413 ddl~r~~~~~~i~~~~irl~~~p~~~a~~l~n~~~C~~~~~q~~s~e~s~~stvd~~~y~~~---------------~-- 475 (913)
T KOG1972|consen 413 DDLKRYNVFNDIQDFIIRLSKAPEAVASSLDNFNPCEEDVTQPESDEESVLSTVDKGIYNLM---------------I-- 475 (913)
T ss_pred ccHHhhhhhhcchhhhhhhhhcchhhHhhhhccccccccCCCcchhHhhhhccccccchHHH---------------H--
Confidence 689999999999999999998766566666699999987522 2121211111111000000 0
Q ss_pred CCCCCcccccccc--CCCccc--hh-----hhhhHHHHHHHHHHHhhcCCcchHHHHHHHH--HHHHHHhhhhhcC---C
Q 001167 700 QSTSSSFSLDILL--GSSNDI--SR-----RTKMMEFLRNAILLCLTVFPRNYVLEEAALV--AEELSVTKMNLSG---C 765 (1134)
Q Consensus 700 ~~~~~~~s~~~l~--g~~~~~--~~-----~~~~~~~v~~~l~~~~~~~~~~~~l~e~~l~--~~~l~~~~~~~~~---~ 765 (1134)
....++... |....+ ++ ..-..+++.+.+.-++..+-.++..+..+.+ ...+|....+.+. -
T Consensus 476 ----~~~~fd~~ln~~k~~e~n~~~lp~~~p~y~d~t~s~ml~a~l~~~lse~~kr~~~k~~~~~t~Hk~lsklt~s~yl 551 (913)
T KOG1972|consen 476 ----GAKWFDEALNIAKTREFNRSTLPELHPSYIDDTKSWLLFADLEVKLSEEQKRKHVKGVTLRTLHKKLSKLTKSFYL 551 (913)
T ss_pred ----HHHHHHHHHhhhhheecCcccccccChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 000011100 111000 00 0113467777777776665555433321111 0112211111000 0
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc---CCchhcc--CChHHHHHHHHHHHHhc
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE---GLPLVLK--SNAPLLYLWYAEVELSS 840 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~---~~~~~~~--~~~~~lwl~yaemEl~~ 840 (1134)
++..-...+++|++.+| ....++-+.++ .++++++... +.+.... .+...+++...++....
T Consensus 552 ~~~t~q~~~vnl~e~r~--ks~k~~~~l~~-----------l~~s~vsr~~t~~ale~s~~~~v~~~~~~l~~~elh~~~ 618 (913)
T KOG1972|consen 552 NPDTEQELLVNLLEARP--KSRKNADVLCS-----------LGDSAVSRNSTSYALERSCLCLVQGEFSRLKCFELHRYY 618 (913)
T ss_pred CchHHHHHHHHHHHhhh--hHHHHHHHHHH-----------HHHhHHHHhhccccchHHHHHHHhhhhhHHHHHHHHHHH
Confidence 01111334445555444 33444444443 1222222111 1110000 01123444444444432
Q ss_pred CCCCCCchHHHHHHHHHhc--CC------CCCCCCccCCC----ChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHH
Q 001167 841 NSGSDPDSSLRAIHVLSCL--GS------GSTYTPFKCQP----SNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALI 908 (1134)
Q Consensus 841 ~~~~~~e~~~rAi~iL~~l--~~------~~~~~~~~~~~----s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~ 908 (1134)
+ ...||.++.++ .. ...+-+....+ -..+..+|-+.+.+..+.+ ..+.+.
T Consensus 619 l-------R~laIln~~sl~~~r~~~vk~ttv~~ke~ll~gd~~ks~dnq~a~~sl~e~~~~~-----------al~e~L 680 (913)
T KOG1972|consen 619 L-------RYLAILNLSSLCSKRHVFVKTTTVIFKELLLPGDKSKSADNQRASQSLFEMLENC-----------ALVEVL 680 (913)
T ss_pred H-------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccccccccchhhhhhhhhcchh-----------HHHHHH
Confidence 1 01223222211 00 00000000000 0122233333333222211 222222
Q ss_pred HHHHHHHHHhc--CHHHHHHHHH-HHHHhhcCccccCCccHHHHHHHHHHHHHHhhccC-----CHHHHHHHHHHHHHhC
Q 001167 909 CSAALFEELTN--GWTAGIEVLH-QAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQL-----SLSTVWETTLHGLQIY 980 (1134)
Q Consensus 909 ~~~Alfe~Lt~--~~~~A~~v~~-~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~-----~l~~~R~~l~~aL~~f 980 (1134)
...|++..+.. --+.|...+. .+++.+.+.....+..--.+|..|.++.-.|...+ ++.+.| ..+.++.+|
T Consensus 681 ~~VcLi~~l~~~~~~~~amd~L~~l~i~eFe~~a~k~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~f 759 (913)
T KOG1972|consen 681 MAVCLIRFLWQRGHQELAMDLLQALVIQEFESFAPKLSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLF 759 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhc
Confidence 23334444433 2333444222 22223333322233333344555544443333222 234566 667789999
Q ss_pred CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcC--C---CchHHHHHHHHHhcC---CCCCC
Q 001167 981 PYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRK--G---PPHRIRGLFERALAN---DTVRC 1052 (1134)
Q Consensus 981 P~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~--g---~~~raRalFErAl~s---~~~~~ 1052 (1134)
|.|..+|..|+.+++..+.-.|-|-+=.++. . ..|-.||+.+..-+ | .-++.+.+|..|..+ ..++.
T Consensus 760 srn~~~~e~wa~l~s~l~qk~r~rl~~~k~~--~---~~~n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~ 834 (913)
T KOG1972|consen 760 SRNAFGWELWAELESELRQKIRKRLSSTKNE--V---DGRNAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPD 834 (913)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhh--h---cchhhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCc
Confidence 9999999999999875443333333222221 1 12223444432211 2 346778888555543 35677
Q ss_pred CHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChH--HHHHHHHHhhhcCcccccchHHh
Q 001167 1053 SVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAK--ELSDLQEVMRDKELNLRTDIYEI 1129 (1134)
Q Consensus 1053 s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~--EL~~l~dvM~EKeLRir~dleE~ 1129 (1134)
.+.+||.|+.+.... ++.++.+.++++|++.|||+|.|+||++..+ |. ||++++++|+|||+|+||+.||+
T Consensus 835 ~~~~WR~yl~~lskl-~~~~~~~~~~tkA~~sCpW~K~l~md~ie~l-----~v~mel~~ii~litekE~~~~v~~Ee~ 907 (913)
T KOG1972|consen 835 ENSKWRDYLEALSKL-LNKERSKAASTKALDSCPWAKWLEMDVIEDL-----PVWMELREIIDLITEKEMGERVDEEEL 907 (913)
T ss_pred chhHHHHHHHHHHHh-hhhhhhHHHHHHHhhcCchHHHHHHHHHHhc-----cchhhHHHHHHHHHHHhhhccCCHHHH
Confidence 889999999999986 7799999999999999999999999999998 77 99999999999999999999976
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.1e-29 Score=279.87 Aligned_cols=311 Identities=18% Similarity=0.228 Sum_probs=240.2
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
...||.+..+.|..+..|+.||..||.+|+++.++++||+||++|++.+| .++.||..|+-||...||....
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--------RVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--------RVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--------hHHHHHHHHHHHHHHhcccHHH
Confidence 56799999999999999999999999999999999999999999999998 5788999999999988763210
Q ss_pred -ch--------------------------HHHHHHHHH----hcCCCCCCCCc------------------------cC-
Q 001167 847 -DS--------------------------SLRAIHVLS----CLGSGSTYTPF------------------------KC- 870 (1134)
Q Consensus 847 -e~--------------------------~~rAi~iL~----~l~~~~~~~~~------------------------~~- 870 (1134)
.+ +++|..|.. |.|....+..+ +.
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 00 122222211 11110000000 00
Q ss_pred -------------CCChhHHHHHHHHH-----------------------------------------------------
Q 001167 871 -------------QPSNVQVLRAHQGY----------------------------------------------------- 884 (1134)
Q Consensus 871 -------------~~s~~~ILkAr~~~----------------------------------------------------- 884 (1134)
+..+....+||-.|
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 00011111222222
Q ss_pred -------------------------HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhcCc
Q 001167 885 -------------------------MERIKAVRSAWLRGAVSDQSIALICSAALFEELT-NGWTAGIEVLHQAFAMVLPE 938 (1134)
Q Consensus 885 -------------------------~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt-~~~~~A~~v~~~al~~~~~~ 938 (1134)
+.++..+.. ......+.+++++|+.||+|+.+. .+++.+++||+.++... |+
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp-~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI-PH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPP-ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI-PH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-Cc
Confidence 222111100 011112247899999999999984 68999999999999954 44
Q ss_pred cccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CH
Q 001167 939 RRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SL 1017 (1134)
Q Consensus 939 ~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~ 1017 (1134)
..+++.++|++||+++-++ .++..+|.+|..||..||.+..| ..|+++|.+.+.++|||.+|++.++-.| +.
T Consensus 399 ---kkFtFaKiWlmyA~feIRq---~~l~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 399 ---KKFTFAKIWLMYAQFEIRQ---LNLTGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred ---ccchHHHHHHHHHHHHHHH---cccHHHHHHHHHHhccCCchhHH-HHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 4689999999999999765 47889999999999999999875 4799999999999999999999999988 67
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001167 1018 VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFL 1097 (1134)
Q Consensus 1018 ~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~ 1097 (1134)
..|+-...+|... |+..|||++|+-||+.+...+..+||+.||.||+.. |.+++||.+|.|.|+..+.+| +|+.-..
T Consensus 472 ~~W~kyaElE~~L-gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~-~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 472 YAWSKYAELETSL-GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE-GEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc-chHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 8999888899877 899999999999999988899999999999999996 999999999999999999999 8986443
No 4
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=8.5e-24 Score=243.72 Aligned_cols=336 Identities=18% Similarity=0.179 Sum_probs=250.7
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
++.||.+..+...-.|+++.||.+||++|. |+.|++|+++|.+.+|+ ...+|+..|.+|..+||.++.
T Consensus 392 ~~darilL~rAveccp~s~dLwlAlarLet----YenAkkvLNkaRe~ipt--------d~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 392 PEDARILLERAVECCPQSMDLWLALARLET----YENAKKVLNKAREIIPT--------DREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHH----HHHHHHHHHHHHhhCCC--------ChhHHHHHHHHHHhcCCHHHH
Confidence 556888777777779999999999999998 99999999999999984 357999999999999876665
Q ss_pred -chHHHHHHHHHhcCCCCCCC----------CccCCCChhHHHHH-------------------------------HHHH
Q 001167 847 -DSSLRAIHVLSCLGSGSTYT----------PFKCQPSNVQVLRA-------------------------------HQGY 884 (1134)
Q Consensus 847 -e~~~rAi~iL~~l~~~~~~~----------~~~~~~s~~~ILkA-------------------------------r~~~ 884 (1134)
.++++++.-|..-+.....+ ..++.+++-.|.+| |.+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 46777777665433221110 01122333333332 2222
Q ss_pred HHHHHHH---HHHhh--------hcCCC-------------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCc--
Q 001167 885 MERIKAV---RSAWL--------RGAVS-------------DQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPE-- 938 (1134)
Q Consensus 885 ~~~l~~~---~s~l~--------~~~~~-------------~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~-- 938 (1134)
..+++-. .+.|. +|... .....+|..||.--++.+++.+|+.++.+|++..+..
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 2222110 00111 01000 1233556688888888889999999999998864311
Q ss_pred ----------------c-------ccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001167 939 ----------------R-------RSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISN 995 (1134)
Q Consensus 939 ----------------~-------~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~ 995 (1134)
+ .......|++|+.++.+++... ....++.+++++|+.||...+||++..+++.
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld---~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD---NVEEALRLLEEALKSFPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh---hHHHHHHHHHHHHHhCCchHHHHHHHhHHHH
Confidence 0 0012346899999999998753 5678899999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 996 LYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 996 ~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
+.+.++.+|..|..+++.|| |+.+|+....+|... |+..|||++|++|.. ++|.++.||..-|++|++ +||.+.|
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~-~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR-~gn~~~a 772 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD-GQLVRARSILDRARL--KNPKNALLWLESIRMELR-AGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh-cchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHH-cCCHHHH
Confidence 99999999999999999999 889999999999866 799999999999998 889999999999999999 5999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcCccccc
Q 001167 1075 RRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRT 1124 (1134)
Q Consensus 1075 R~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKeLRir~ 1124 (1134)
+.++.+|||.||.+..||.++|-.... |+.--.-+|-|.--+=.-||
T Consensus 773 ~~lmakALQecp~sg~LWaEaI~le~~---~~rkTks~DALkkce~dphV 819 (913)
T KOG0495|consen 773 ELLMAKALQECPSSGLLWAEAIWLEPR---PQRKTKSIDALKKCEHDPHV 819 (913)
T ss_pred HHHHHHHHHhCCccchhHHHHHHhccC---cccchHHHHHHHhccCCchh
Confidence 999999999999999999999964311 33334445555544444443
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.9e-23 Score=229.94 Aligned_cols=300 Identities=18% Similarity=0.196 Sum_probs=215.7
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC-Cch
Q 001167 770 CQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD-PDS 848 (1134)
Q Consensus 770 aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~-~e~ 848 (1134)
-||-+..-|+.|+.++..|..||++|..++++.+||.||++||..-. ....||+.||+||+.+.+.|. ++.
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~--------r~itLWlkYae~Emknk~vNhARNv 129 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY--------RNITLWLKYAEFEMKNKQVNHARNV 129 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--------ccchHHHHHHHHHHhhhhHhHHHHH
Confidence 47788899999999999999999999999999999999999997654 345799999999999887663 467
Q ss_pred HHHHHHHHHhcCCC-CCC-----------------------CCcc--------CCCChhHHHHHHHHHHHHHHHHHHHhh
Q 001167 849 SLRAIHVLSCLGSG-STY-----------------------TPFK--------CQPSNVQVLRAHQGYMERIKAVRSAWL 896 (1134)
Q Consensus 849 ~~rAi~iL~~l~~~-~~~-----------------------~~~~--------~~~s~~~ILkAr~~~~~~l~~~~s~l~ 896 (1134)
.+|||.+|..+..- .+| .|.. .++.-..|.+||..|+.-+-.
T Consensus 130 ~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~------ 203 (677)
T KOG1915|consen 130 WDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV------ 203 (677)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee------
Confidence 89999988554210 000 0100 011123344444444433210
Q ss_pred hcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccc-----------------------------cC--Ccc
Q 001167 897 RGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERR-----------------------------SC--SHQ 945 (1134)
Q Consensus 897 ~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~-----------------------------~~--~~~ 945 (1134)
. .-+.-|+.||.||.-.+++.-|+.||+.|++.+..+-. .+ +-.
T Consensus 204 ---H--P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 204 ---H--PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR 278 (677)
T ss_pred ---c--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1 11333445666666666666666666666555432100 00 012
Q ss_pred HHHHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----
Q 001167 946 LEFLFNFNVRMLQRHHKQLSL-----STVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS---- 1016 (1134)
Q Consensus 946 ~E~L~~~~a~ll~~~~~~~~l-----~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps---- 1016 (1134)
.+.|+-.+..+....+...++ .+-|-.++.-+...|.|..-|..|+.++...|..+++|.+|++++.+.|+
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ek 358 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEK 358 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHH
Confidence 466666666666666554443 35666889999999999999999999998889999999999999999874
Q ss_pred ------HHHHHH-HHHHHHHcCCCchHHHHHHHHHhcCCCC--CCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1017 ------LVVSLF-ALAFEMSRKGPPHRIRGLFERALANDTV--RCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1017 ------~~~wlf-aI~~E~~r~g~~~raRalFErAl~s~~~--~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
+-+|+- +.+.|+.. .++.|+|.+|..+|..-+. .+.+.||.+|.+||+++ -|+..||+++..||+.||.
T Consensus 359 r~W~RYIYLWinYalyeEle~-ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq-~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 359 RYWRRYIYLWINYALYEELEA-EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQ-LNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH-cccHHHHHHHHHHhccCCc
Confidence 457864 44556655 7999999999999984332 45689999999999997 8999999999999999999
Q ss_pred cHH
Q 001167 1088 SKR 1090 (1134)
Q Consensus 1088 sK~ 1090 (1134)
.|.
T Consensus 437 ~Kl 439 (677)
T KOG1915|consen 437 DKL 439 (677)
T ss_pred hhH
Confidence 983
No 6
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=4.6e-20 Score=213.18 Aligned_cols=308 Identities=17% Similarity=0.128 Sum_probs=247.2
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
++-||.+++.+|+.+|..-.||...|++|..+|..+.-..+|++|+...| .++.+|+.||..-+..|.
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--------kae~lwlM~ake~w~agd---- 599 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--------KAEILWLMYAKEKWKAGD---- 599 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--------cchhHHHHHHHHHHhcCC----
Confidence 56689999999999999999999999999999999999999999999988 356799999998887753
Q ss_pred chHHHHHHHHHhcCCCCCCCCcc---------CCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 001167 847 DSSLRAIHVLSCLGSGSTYTPFK---------CQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEEL 917 (1134)
Q Consensus 847 e~~~rAi~iL~~l~~~~~~~~~~---------~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~L 917 (1134)
+-.|..||...- .++|.+ .+....+..+||..|..+... ..+.-+|..++.||..
T Consensus 600 --v~~ar~il~~af---~~~pnseeiwlaavKle~en~e~eraR~llakar~~-----------sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 600 --VPAARVILDQAF---EANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-----------SGTERVWMKSANLERY 663 (913)
T ss_pred --cHHHHHHHHHHH---HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-----------CCcchhhHHHhHHHHH
Confidence 334555654320 111111 122344566777777655321 1233456678899999
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhC
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLY 997 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~ 997 (1134)
.++++.|+.++++++..+ +.+-+||++..+++... ..+..+|+.|..|+..||++..||.+++.+|...
T Consensus 664 ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~---~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQM---ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHH---HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 999999999999999976 46889999999988554 3578899999999999999999999999999988
Q ss_pred CChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc--------
Q 001167 998 TTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA-------- 1068 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~-------- 1068 (1134)
+...|||.+|++++.+|| ...+||-+|.+|+.. |+...|+.+.-+||+ .|+.|++||..-|.+|.+..
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~-gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRA-GNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHH
Confidence 899999999999999999 789999999999966 899999999999999 99999999999999887531
Q ss_pred ---------------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhh
Q 001167 1069 ---------------------SNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMR 1116 (1134)
Q Consensus 1069 ---------------------~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~ 1116 (1134)
..+++||.+|.||+..||..+..|.--|..--..=+.+.-.+|++...
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 357899999999999999999988766653111223445556665443
No 7
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.82 E-value=5.1e-17 Score=188.28 Aligned_cols=285 Identities=13% Similarity=0.138 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH---hcCC
Q 001167 785 VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLS---CLGS 861 (1134)
Q Consensus 785 l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~---~l~~ 861 (1134)
-.||.+||++.+.+|+++.||.||++|+...-... ++...+|..||+||+.+.+ ++.|+.++. ++|.
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v----~dLa~vw~~waemElrh~~------~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV----EDLAEVWCAWAEMELRHEN------FEAALKLMRRATHVPT 456 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch----HHHHHHHHHHHHHHHhhhh------HHHHHHHHHhhhcCCC
Confidence 48999999999999999999999999998765332 2356799999999998754 778888874 3444
Q ss_pred CC---CCCCcc------------------CCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC
Q 001167 862 GS---TYTPFK------------------CQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNG 920 (1134)
Q Consensus 862 ~~---~~~~~~------------------~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~ 920 (1134)
+. .|+-.. .+.+.+.+.++|..|+..++-. ..+..++..||+|..-+..
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr----------iaTPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR----------IATPQIIINYAMFLEEHKY 526 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhhHH
Confidence 42 121100 0224455566777777665432 1335677799999999999
Q ss_pred HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHhhCC
Q 001167 921 WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS--PKLFNTLVEISNLYT 998 (1134)
Q Consensus 921 ~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N--~~ll~~~~~lE~~~~ 998 (1134)
++.|.++|++.++.+... ...+.+-.+..+++.+.+. ..+.++|.++++||..||-. .-++++|+.+|...|
T Consensus 527 feesFk~YErgI~LFk~p-----~v~diW~tYLtkfi~rygg-~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWP-----NVYDIWNTYLTKFIKRYGG-TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHHHHHHcCCccCCCc-----cHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999987543 1344444456788877653 45889999999999999953 235668999999999
Q ss_pred ChhHHHHHHHHHHhhCCC---HHHHHHHH-HHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 999 TPNKLRWIFDLYCHKKPS---LVVSLFAL-AFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~ps---~~~wlfaI-~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
...++-.+|++++...+. ...|-..| ..+... .+.+.|.+||+||++-+..+...+-.-|.+||... |.++||
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~y--Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl-GEidRA 677 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY--GVPRTREIYEKAIESLPDSKAREMCLRFADLETKL-GEIDRA 677 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 999999999999887663 34453333 233333 46789999999999644455567888899999996 999999
Q ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHh
Q 001167 1075 RRIFFRAIHACP--WSKRLWLDGFLKL 1099 (1134)
Q Consensus 1075 R~Vf~RAL~~CP--wsK~L~m~a~~~l 1099 (1134)
|.||.-+-+.|| -..++| +.+..|
T Consensus 678 RaIya~~sq~~dPr~~~~fW-~twk~F 703 (835)
T KOG2047|consen 678 RAIYAHGSQICDPRVTTEFW-DTWKEF 703 (835)
T ss_pred HHHHHhhhhcCCCcCChHHH-HHHHHH
Confidence 999999999997 345555 455443
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=1.2e-11 Score=144.39 Aligned_cols=312 Identities=14% Similarity=0.164 Sum_probs=211.1
Q ss_pred CCChHHHHHHHhhhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCC---
Q 001167 767 VTPCQPLAKGLLKSDRQDV-LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNS--- 842 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl-~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~--- 842 (1134)
.-+.-++.++-++.+++-+ .||+..|...++.|.++.||.||+.|+....+. ++...+|-.|+.+|...-+
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv-----rDFt~ifd~Ya~FEE~~~~~~m 303 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV-----RDFTQIFDAYAQFEESCVAAKM 303 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh-----hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999987766 689999999999999999999999999887643 3566788889887764210
Q ss_pred -------CCCCc--hHHHHHHHHHhcCCCCC-C-CCc---cCCCChhHHH-----------HHHHHHHHHHHHHHHHhhh
Q 001167 843 -------GSDPD--SSLRAIHVLSCLGSGST-Y-TPF---KCQPSNVQVL-----------RAHQGYMERIKAVRSAWLR 897 (1134)
Q Consensus 843 -------~~~~e--~~~rAi~iL~~l~~~~~-~-~~~---~~~~s~~~IL-----------kAr~~~~~~l~~~~s~l~~ 897 (1134)
++... .++-....+..+-+..+ + +.. ..+-.....+ +--+.|.++++.+ ..
T Consensus 304 e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v----dP 379 (835)
T KOG2047|consen 304 ELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV----DP 379 (835)
T ss_pred hhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc----Cc
Confidence 11111 11111111111111000 0 000 0000011111 1124566665443 11
Q ss_pred cCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 001167 898 GAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGL 977 (1134)
Q Consensus 898 ~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL 977 (1134)
.........+|+.||.|-+-++.++.|+.+|++|...--+. --..+.+|..+|.++.+|. +...+..++.+|+
T Consensus 380 ~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~----v~dLa~vw~~waemElrh~---~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 380 KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT----VEDLAEVWCAWAEMELRHE---NFEAALKLMRRAT 452 (835)
T ss_pred ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc----hHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhh
Confidence 11112345688899999999999999999999997642111 1246889999999988775 5777788888775
Q ss_pred HhCCCC-------------------HHHHHHHHHHHhhCCChhHHHHHHHHHHhh--CCCHHHHHHHHHHHHHcCCCchH
Q 001167 978 QIYPYS-------------------PKLFNTLVEISNLYTTPNKLRWIFDLYCHK--KPSLVVSLFALAFEMSRKGPPHR 1036 (1134)
Q Consensus 978 ~~fP~N-------------------~~ll~~~~~lE~~~~~~~raR~il~~~~~~--~ps~~~wlfaI~~E~~r~g~~~r 1036 (1134)
. -|.+ ..+|+.|+++|...|.++.+|.+|++.+.- ..+..+--+|..+|.+. -..-
T Consensus 453 ~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~--yfee 529 (835)
T KOG2047|consen 453 H-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK--YFEE 529 (835)
T ss_pred c-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH--HHHH
Confidence 2 3333 479999999999999999999999998743 33445556788887653 5667
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHH-hHHHhcC-CHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 001167 1037 IRGLFERALANDTVRCSVVLWRWYIA-YEVYIAS-NPFAARRIFFRAIHACP--WSKRLWLDGFL 1097 (1134)
Q Consensus 1037 aRalFErAl~s~~~~~s~~LWr~YI~-fE~~~~~-n~~rAR~Vf~RAL~~CP--wsK~L~m~a~~ 1097 (1134)
+=.+||++|..-+-+.--.||..|+. |-.+.+| .+++||.+|.+||..|| .+|.||+....
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77899999986666777889999997 4444433 67999999999999999 57888886553
No 9
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.5e-12 Score=153.26 Aligned_cols=342 Identities=38% Similarity=0.516 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHhhCCC-----ChHHHHHHHhhhhhhccccccc---chhhHHHHHHHHHHHHHHHhCCCC-hHHHHHHHH
Q 001167 261 LRKTKEFNKLTREHPY-----DVKGWLEFADFQDVVGSKESKR---GVRLQILEKKISILEKAVELNPDN-EELLLSLMK 331 (1134)
Q Consensus 261 ~~r~~eln~~v~e~P~-----Di~~Wl~li~~Qd~~~~~~~~k---~~~~~~~E~KlsilekAL~~~p~~-~~Lll~~l~ 331 (1134)
..+.+++|+....+++ |.-+|+-|..++.++...+.++ +.++.+..++++.|.++.-.+|.. .++++.+++
T Consensus 486 ~~k~~e~n~~~lp~~~p~y~d~t~s~ml~a~l~~~lse~~kr~~~k~~~~~t~Hk~lsklt~s~yl~~~t~q~~~vnl~e 565 (913)
T KOG1972|consen 486 IAKTREFNRSTLPELHPSYIDDTKSWLLFADLEVKLSEEQKRKHVKGVTLRTLHKKLSKLTKSFYLNPDTEQELLVNLLE 565 (913)
T ss_pred hhhheecCcccccccChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH
Confidence 3599999999999999 9999999999999988665443 556667888999999999999998 778888888
Q ss_pred Hh-hccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcccccccchhHHHHHHH--HHHHHHHHHHHHHhHhhcccC---
Q 001167 332 AY-QSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYA--HAIQALSAACIKQFRQVNQTV--- 405 (1134)
Q Consensus 332 ~~-~~~w~~~~l~~~W~~~l~~~p~~~~LW~~yL~~~q~~~~~F~~~~~~~~y~--~~l~~l~~~~~~~~~q~~~~~--- 405 (1134)
.- ......+++..+|.+.+.++..++.+|...+-++|+.++.++...+...|. .++..+.+.|.......++|.
T Consensus 566 ~r~ks~k~~~~l~~l~~s~vsr~~t~~ale~s~~~~v~~~~~~l~~~elh~~~lR~laIln~~sl~~~r~~~vk~ttv~~ 645 (913)
T KOG1972|consen 566 ARPKSRKNADVLCSLGDSAVSRNSTSYALERSCLCLVQGEFSRLKCFELHRYYLRYLAILNLSSLCSKRHVFVKTTTVIF 645 (913)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHhhccccchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 77 556678999999999999999999999999999999999999998888877 455566777776655555441
Q ss_pred -----CCC---CCCh--------HHHHH-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH--HhhccCCccccchhHHH
Q 001167 406 -----KPA---SLDP--------AIIQL-ELGLVDIFLSLCRLEWQAGYQELATALFQAEI--EFSLFCPSLLLTEQSKH 466 (1134)
Q Consensus 406 -----~~~---~~~~--------~~~~~-e~~~l~if~r~~~fl~qaG~~E~Ava~~QA~l--E~n~f~P~~~~~~~~~~ 466 (1134)
... +.+. ++++. ..-.+-..+=+++|+.+.||.|+|+.+.||+. ||-=|.|....+.++..
T Consensus 646 ke~ll~gd~~ks~dnq~a~~sl~e~~~~~al~e~L~~VcLi~~l~~~~~~~~amd~L~~l~i~eFe~~a~k~s~~~~~~y 725 (913)
T KOG1972|consen 646 KELLLPGDKSKSADNQRASQSLFEMLENCALVEVLMAVCLIRFLWQRGHQELAMDLLQALVIQEFESFAPKLSLTEQSLY 725 (913)
T ss_pred hhhhcccccccccccchhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhHHHH
Confidence 000 1111 11111 11222333456889999999999999999999 99999998876677777
Q ss_pred HHhh-----hhhccCCCc-------CCCC-------CccchhHHHHhhHHHHHhhhhhccccccCCCCCC--C---CCCC
Q 001167 467 RLFE-----HFWNGDGAR-------VGEE-------GALGWSAWLEKEEENRQRIVKEETSHDNEKGGWT--G---WSEP 522 (1134)
Q Consensus 467 ~~Fe-----~FWeS~~pR-------iGE~-------gA~GW~~~~~~~~~~~q~~~~~~~~~~~~~gg~~--~---~~~p 522 (1134)
+.+. .||.|-..+ ++|. |+.||..|.+.+.+.+|..+.+.-+.++..+||. . |..|
T Consensus 726 ~~ycqiq~~~~~~S~l~f~~~~k~rF~e~~v~~fsrn~~~~e~wa~l~s~l~qk~r~rl~~~k~~~~~~n~ai~~~~~i~ 805 (913)
T KOG1972|consen 726 RSYCQIQIKHFWASNLAFYNLPKVRFFEEGVTLFSRNAFGWELWAELESELRQKIRKRLSSTKNEVDGRNAAIHAEQVIP 805 (913)
T ss_pred HHHHHHHHHHHHhhhhhcccccceeeeccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccccc
Confidence 7777 999999988 9999 9999999999999999988887777777777776 2 2233
Q ss_pred CccCC-CCCCCCcccCC--CCcchHH-HHHHHhhhcccchhHHHHHhhcccccccccccccCcchHhhHHHHHhcccccC
Q 001167 523 ISKSK-GNSTNSEELGD--DNVSAEE-AEIEKEVMKQEDDTENLLKLLGIDIDVGANAEVKDTSTWTRWAEEESSRDCDH 598 (1134)
Q Consensus 523 ~~k~~-~~~~~~~~~~~--~~~~~e~-e~~e~e~~~~e~d~~~~~~~lg~~~d~~~~~~~k~~~~~~~W~~~E~~r~~~~ 598 (1134)
..... -+.. +... +-..... ++...+...-....+.|.+.++.....+...++.+.-+|..|+.+|-.+....
T Consensus 806 e~~~~~i~~a---~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K~l~md~ie~l~v 882 (913)
T KOG1972|consen 806 ETGDDQIMSA---NTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDSCPWAKWLEMDVIEDLPV 882 (913)
T ss_pred cchHHHHhHH---HHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHHHHHHHHHHhccc
Confidence 21000 0000 0000 0000000 00011112223346677777776555555556677789999999999999999
Q ss_pred cccCCCC
Q 001167 599 WMPVHSE 605 (1134)
Q Consensus 599 ~lP~R~~ 605 (1134)
|||.|..
T Consensus 883 ~mel~~i 889 (913)
T KOG1972|consen 883 WMELREI 889 (913)
T ss_pred hhhHHHH
Confidence 9999965
No 10
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.36 E-value=1.7e-10 Score=143.91 Aligned_cols=251 Identities=15% Similarity=0.159 Sum_probs=188.0
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHH
Q 001167 772 PLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLR 851 (1134)
Q Consensus 772 k~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~r 851 (1134)
.=..+|+..+|++.-+|..|..+-...+.++.||+|+++||....-. ++ ....-+|+.|..||...|+ .+.+
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-Ee--eEKLNiWiA~lNlEn~yG~---eesl-- 1516 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR-EE--EEKLNIWIAYLNLENAYGT---EESL-- 1516 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-hh--HHHHHHHHHHHhHHHhhCc---HHHH--
Confidence 44567778899999999999999999999999999999999887411 11 1123589999999998763 1112
Q ss_pred HHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 001167 852 AIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQA 931 (1134)
Q Consensus 852 Ai~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~a 931 (1134)
.+.|+++.+++ +...+++ ..+-+-..+..++.|.++|+..
T Consensus 1517 -----------------------------~kVFeRAcqyc---------d~~~V~~--~L~~iy~k~ek~~~A~ell~~m 1556 (1710)
T KOG1070|consen 1517 -----------------------------KKVFERACQYC---------DAYTVHL--KLLGIYEKSEKNDEADELLRLM 1556 (1710)
T ss_pred -----------------------------HHHHHHHHHhc---------chHHHHH--HHHHHHHHhhcchhHHHHHHHH
Confidence 22344333322 0001111 1112222345678899999998
Q ss_pred HHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhhCCChhHHHHHHHH
Q 001167 932 FAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY--SPKLFNTLVEISNLYTTPNKLRWIFDL 1009 (1134)
Q Consensus 932 l~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~--N~~ll~~~~~lE~~~~~~~raR~il~~ 1009 (1134)
+..+. +.-.+|.+|+.++..+ ..-.++|.+|.+||+--|. .-.|...++++|.+++..+|.|.+|+-
T Consensus 1557 ~KKF~--------q~~~vW~~y~~fLl~~---ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1557 LKKFG--------QTRKVWIMYADFLLRQ---NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred HHHhc--------chhhHHHHHHHHHhcc---cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 88763 3456899998888543 3457899999999999999 678899999999999999999999999
Q ss_pred HHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC-CCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHH
Q 001167 1010 YCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTV-RCSVVLWRWYIAYEVYIASNPFAARRIFFRAIH 1083 (1134)
Q Consensus 1010 ~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~-~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~ 1083 (1134)
.+...| -..+|..+|..|+.. +...-+|.+|||++...-. ..---+.+.|++||-.. |+-+.+-.|=.||+.
T Consensus 1626 ll~ayPKRtDlW~VYid~eik~-~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~-Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1626 LLSAYPKRTDLWSVYIDMEIKH-GDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH-GDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHhhCccchhHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc-CchhhHHHHHHHHHH
Confidence 988887 789999999999976 8999999999999974322 22346899999999986 887777777777765
No 11
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.07 E-value=1.9e-09 Score=121.61 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh-CCChhHHHHHHHHHHhhCC-CHHHHHHHHH
Q 001167 948 FLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNL-YTTPNKLRWIFDLYCHKKP-SLVVSLFALA 1025 (1134)
Q Consensus 948 ~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~-~~~~~raR~il~~~~~~~p-s~~~wlfaI~ 1025 (1134)
.+|+.+++++++.. ++..+|.++.+|+..-+.+..+|..++.+|.. .+....|+.||+.+++..+ +...|+.++.
T Consensus 2 ~v~i~~m~~~~r~~---g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE---GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 47888888887764 58899999999996656678889899999977 5667779999999999877 6799999999
Q ss_pred HHHHcCCCchHHHHHHHHHhcCCCCCC-CHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1026 FEMSRKGPPHRIRGLFERALANDTVRC-SVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1026 ~E~~r~g~~~raRalFErAl~s~~~~~-s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
+++.. ++.+.||++||+|+..-.... +..||..||+||... |+++..+.|..|+.+.+|-.+.+..
T Consensus 79 ~l~~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~-Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 79 FLIKL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY-GDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99987 799999999999998533333 678999999999997 9999999999999999999776654
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.99 E-value=1.6e-06 Score=111.22 Aligned_cols=316 Identities=10% Similarity=-0.038 Sum_probs=182.2
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
.+...|..+.+..++.+|.+...|...|.+....|+++.|.+.|.+++...+.. ...+...+......+
T Consensus 377 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~~l~~~~~~~~--- 445 (899)
T TIGR02917 377 GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL--------GRADLLLILSYLRSG--- 445 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc--------hhhHHHHHHHHHhcC---
Confidence 456778888888888899999999999999999999999999999998876521 122333333333433
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCcc------CCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q 001167 845 DPDSSLRAIHVLSCLGSGSTYTPFK------CQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELT 918 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l~~~~~~~~~~------~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt 918 (1134)
...+|+.++..+....+..+.. .-.......+|...|.+.+... .. ....+..++......
T Consensus 446 ---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 446 ---QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--------PD--FFPAAANLARIDIQE 512 (899)
T ss_pred ---CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--------CC--cHHHHHHHHHHHHHC
Confidence 2556777665442211111100 0001223344555555443211 11 122233445555556
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
+.++.|..+|++++...+ .....+...+.+... .+....+...+.+++...|.+...+..++..-...+
T Consensus 513 g~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDP--------KNLRAILALAGLYLR---TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581 (899)
T ss_pred CCHHHHHHHHHHHHHhCc--------CcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence 778888888887776432 223344444444333 234556666777777777776665555555555666
Q ss_pred ChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHH
Q 001167 999 TPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRI 1077 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~V 1077 (1134)
..+++..+++++....| +...|......-... |....|...|++++. ..+.++..|..+..+.... |+++.|..+
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~A~~~ 657 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-GDLNKAVSSFKKLLA--LQPDSALALLLLADAYAVM-KNYAKAITS 657 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHc-CCHHHHHHH
Confidence 67777777776665544 444553333332223 566777777777766 3455566666666655553 677777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcC
Q 001167 1078 FFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKE 1119 (1134)
Q Consensus 1078 f~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKe 1119 (1134)
|.+++..+|.....|......+...=..++-..+++.|.++.
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777777666665554444333333455555555555443
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.99 E-value=9.9e-07 Score=113.17 Aligned_cols=312 Identities=13% Similarity=-0.037 Sum_probs=212.0
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|..+++.+++.+|.+...|..++.+....|+++.|..+|++++...|. ....|...+.+....++
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~- 650 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD--------SALALLLLADAYAVMKN- 650 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCC-
Confidence 345678888999999999999999999999999999999999999999987762 23456666666665543
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCcc------CCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFK------CQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEEL 917 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~------~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~L 917 (1134)
...|+.++...-...+..... ..........|...+.... ...... ...+...+...+.
T Consensus 651 -----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~ 715 (899)
T TIGR02917 651 -----YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ--------KQHPKA--ALGFELEGDLYLR 715 (899)
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCcCC--hHHHHHHHHHHHH
Confidence 567777764431111100000 0000111122222222221 111111 1222334455566
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhC
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLY 997 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~ 997 (1134)
.++++.|...|.+++...+ .. ..+...+.++.. .+....+...+.+.+...|.+...+..++.+-...
T Consensus 716 ~g~~~~A~~~~~~~~~~~~--------~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAP--------SS-QNAIKLHRALLA---SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ 783 (899)
T ss_pred CCCHHHHHHHHHHHHhhCC--------Cc-hHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 7889999999999988532 11 233344444433 34677888999999999999998887777777778
Q ss_pred CChhHHHHHHHHHHhhCCC-HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 998 TTPNKLRWIFDLYCHKKPS-LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~ps-~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
+..+++..+|++++...|. ...+....+.-... |. .+|...|++++. ..+.++.+|..+....... |+++.|..
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-g~~~~A~~ 858 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL-KD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEK-GEADRALP 858 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-Cc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHc-CCHHHHHH
Confidence 9999999999999988773 44454333333334 56 789999999998 4567889999998888875 99999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhh
Q 001167 1077 IFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMR 1116 (1134)
Q Consensus 1077 Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~ 1116 (1134)
+|.+|+..-|....+|......+...=.++|-..+++-|.
T Consensus 859 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999887777665555444445667667666664
No 14
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.88 E-value=2.8e-08 Score=112.24 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH
Q 001167 906 ALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK 985 (1134)
Q Consensus 906 ~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ 985 (1134)
..|+.|+.|...++|+++||.||.+|+.. ......+|+.+|.+++++. .+...++.+++.|++.||.+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~--~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCN--KDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTC--S-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHCCCCHH
Confidence 35678899999999999999999999742 2345679999999998865 4667799999999999999999
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH----HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHH
Q 001167 986 LFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL----VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRW 1059 (1134)
Q Consensus 986 ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~----~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~ 1059 (1134)
||..|++++...+..+.+|.+|++++...+.. .+|-..|.+|... |+..+++.++.|+.. ..+....++..
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~-Gdl~~v~~v~~R~~~--~~~~~~~~~~f 146 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY-GDLESVRKVEKRAEE--LFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH-S-HHHHHHHHHHHHH--HTTTS-HHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--HhhhhhHHHHH
Confidence 99999999988899999999999999887754 4999999999988 799999999999997 34444555554
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.83 E-value=1.2e-05 Score=94.54 Aligned_cols=299 Identities=15% Similarity=0.039 Sum_probs=188.9
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|...++.+++.+|++...|...|.+....|+++.|..+++.++.... .+.. .....+...+.+....|+
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~---~~~~~~~~La~~~~~~g~- 122 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTRE---QRLLALQELGQDYLKAGL- 122 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCHH---HHHHHHHHHHHHHHHCCC-
Confidence 34567799999999999999999999999999999999999999999886322 1100 011233333444444332
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
+..|+.++... +.. ..........++......+.++.
T Consensus 123 -----~~~A~~~~~~~----------------------------l~~----------~~~~~~~~~~la~~~~~~g~~~~ 159 (389)
T PRK11788 123 -----LDRAEELFLQL----------------------------VDE----------GDFAEGALQQLLEIYQQEKDWQK 159 (389)
T ss_pred -----HHHHHHHHHHH----------------------------HcC----------CcchHHHHHHHHHHHHHhchHHH
Confidence 44555544322 110 00001111223333344678999
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHH
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKL 1003 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~ra 1003 (1134)
|++.|..++...+.. .......++...+.+. .....+..+...+.++++..|.+...+..++......+..+++
T Consensus 160 A~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 160 AIDVAERLEKLGGDS---LRVEIAHFYCELAQQA---LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred HHHHHHHHHHhcCCc---chHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999877643211 0000111222223222 2235677899999999999999887776677777778999999
Q ss_pred HHHHHHHHhhCCCH--HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 001167 1004 RWIFDLYCHKKPSL--VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRA 1081 (1134)
Q Consensus 1004 R~il~~~~~~~ps~--~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RA 1081 (1134)
..+|+++....|.. ..+...+..-... |....+...|++++.. .+.+..+ ...+...... |+++.|..+|.++
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~--~p~~~~~-~~la~~~~~~-g~~~~A~~~l~~~ 308 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRALEE--YPGADLL-LALAQLLEEQ-EGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCchHH-HHHHHHHHHh-CCHHHHHHHHHHH
Confidence 99999998877643 2232222222233 7899999999999984 4444444 5666666664 9999999999999
Q ss_pred HHhCCCcHHHH--HHHHHHhhhccChHHHHHHHHHhhhcCcc
Q 001167 1082 IHACPWSKRLW--LDGFLKLNSILTAKELSDLQEVMRDKELN 1121 (1134)
Q Consensus 1082 L~~CPwsK~L~--m~a~~~l~~~~~~~EL~~l~dvM~EKeLR 1121 (1134)
++.-|....+. +.........=...+--.+++-|.+|+|.
T Consensus 309 l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 309 LRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 99999987654 32222221000134555667777777763
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.80 E-value=4.3e-06 Score=104.84 Aligned_cols=170 Identities=10% Similarity=0.027 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHH
Q 001167 907 LICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKL 986 (1134)
Q Consensus 907 l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~l 986 (1134)
.+...+.+.+..++++.|+..|++++... +.....|...+.++.. .+.+..+...+.++|...|+++.+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~--------P~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELD--------PRVTQSYIKRASMNLE---LGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34455677777899999999999998853 2334455556655543 246788999999999999999998
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 987 FNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 987 l~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
|.....+....+..+.+...|++++...|. ...|+......... |....|...|++|+. ..+.++.+|..+.....
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE-GSIASSMATFRRCKK--NFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 888888877889999999999999998884 45554333333333 789999999999998 56778999999888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1066 YIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1066 ~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
.. |+++.|...|.+|+..+|.....
T Consensus 479 ~~-g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 479 DQ-NKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred Hc-cCHHHHHHHHHHHHhcCCccccc
Confidence 75 99999999999999999965443
No 17
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=2.1e-05 Score=91.87 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=42.8
Q ss_pred cCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcC
Q 001167 781 DRQDVLLCGVYARREA---------FFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSN 841 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~---------~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~ 841 (1134)
++.+..+|+.|..+-. .+..++.-|+||++||..-- .+...+|..|..+|...+
T Consensus 124 di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm-------~nlEkLW~DY~~fE~~IN 186 (656)
T KOG1914|consen 124 DIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM-------HNLEKLWKDYEAFEQEIN 186 (656)
T ss_pred CcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc-------ccHHHHHHHHHHHHHHHH
Confidence 7888999999987744 34478889999999997533 256789999999988753
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.78 E-value=7.7e-06 Score=102.64 Aligned_cols=255 Identities=12% Similarity=0.013 Sum_probs=180.2
Q ss_pred hHHHHHHHhhh---cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 770 CQPLAKGLLKS---DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 770 aRk~aK~LLk~---~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
|-+.++.+|.. .|.+...|...+.+....|+++.|...|++|+...|. ....|+..+.+....+.
T Consensus 313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--------~~~~~~~la~~~~~~g~---- 380 (615)
T TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR--------VTQSYIKRASMNLELGD---- 380 (615)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHCCC----
Confidence 33445555543 5777788999999999999999999999999998773 23456666666555542
Q ss_pred chHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 001167 847 DSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIE 926 (1134)
Q Consensus 847 e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~ 926 (1134)
+..|+..+... +... .. ...++...+.+.+..++++.|+.
T Consensus 381 --~~eA~~~~~~a----------------------------l~~~--------p~--~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 381 --PDKAEEDFDKA----------------------------LKLN--------SE--DPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred --HHHHHHHHHHH----------------------------HHhC--------CC--CHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566554221 1100 00 11223345566667789999999
Q ss_pred HHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHH
Q 001167 927 VLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWI 1006 (1134)
Q Consensus 927 v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~i 1006 (1134)
.|++++...+ .....|...+.+++. .+....+...+.+++..+|+++.++..+..+....+.++.+...
T Consensus 421 ~~~kal~l~P--------~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 421 DYQKSIDLDP--------DFIFSHIQLGVTQYK---EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHcCc--------cCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 9999988643 233445555555443 34678899999999999999999888777877788999999999
Q ss_pred HHHHHhhCCC-------HHHHHH-HHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHH
Q 001167 1007 FDLYCHKKPS-------LVVSLF-ALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIF 1078 (1134)
Q Consensus 1007 l~~~~~~~ps-------~~~wlf-aI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf 1078 (1134)
|++++...|. ...|+. +..+.... +....|..+|++|+. ..+.+...|....+..... |+++.|...|
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~-~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~-g~~~eAi~~~ 565 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWK-QDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQ-GDVDEALKLF 565 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHc-cCHHHHHHHH
Confidence 9999987662 122221 11121123 688999999999998 4467787888778877775 9999999999
Q ss_pred HHHHHhCCCcHHH
Q 001167 1079 FRAIHACPWSKRL 1091 (1134)
Q Consensus 1079 ~RAL~~CPwsK~L 1091 (1134)
.+|+..++...++
T Consensus 566 e~A~~l~~~~~e~ 578 (615)
T TIGR00990 566 ERAAELARTEGEL 578 (615)
T ss_pred HHHHHHhccHHHH
Confidence 9999999976664
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.75 E-value=1.9e-05 Score=99.65 Aligned_cols=305 Identities=12% Similarity=-0.036 Sum_probs=192.3
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|...++.++..+|++...|...|.+....|+++.|...|++|+...|. ....|...+.+....|+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~--------~~~a~~~la~~l~~~g~- 159 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG--------NSQIFALHLRTLVLMDK- 159 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHCCC-
Confidence 455778999999999999999999999999999999999999999999998773 23466666666666543
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
.+.|+..+..+....+-.+. .. .....+....-+.+++......+........... ...+....-.+.++.
T Consensus 160 -----~~eA~~~~~~~~~~~P~~~~-a~-~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~--~~l~~~l~~~g~~~e 230 (656)
T PRK15174 160 -----ELQAISLARTQAQEVPPRGD-MI-ATCLSFLNKSRLPEDHDLARALLPFFALERQESA--GLAVDTLCAVGKYQE 230 (656)
T ss_pred -----hHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHH--HHHHHHHHHCCCHHH
Confidence 45666655322110000000 00 0000011111122222211111111111111111 111122234578999
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhH
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLS-LSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNK 1002 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~-l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~r 1002 (1134)
|...|.+++... +....++...+.++...++... ...+...+.+++...|++...+..++.+-...+.++.
T Consensus 231 A~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 231 AIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999998753 2334555556666654432111 1247899999999999999988888888888899999
Q ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 001167 1003 LRWIFDLYCHKKPS-LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRA 1081 (1134)
Q Consensus 1003 aR~il~~~~~~~ps-~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RA 1081 (1134)
+...|++++...|. ...+......-... |....|...|++++.. .+.....+......... .|+.+.|...|.++
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~~-G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~-~G~~deA~~~l~~a 378 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQV-GQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQ-AGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 99999999988873 44443222222223 7899999999999973 44444333222333344 49999999999999
Q ss_pred HHhCCC-cHHHHHHHHHH
Q 001167 1082 IHACPW-SKRLWLDGFLK 1098 (1134)
Q Consensus 1082 L~~CPw-sK~L~m~a~~~ 1098 (1134)
+..+|. ...-|-+++..
T Consensus 379 l~~~P~~~~~~~~ea~~~ 396 (656)
T PRK15174 379 IQARASHLPQSFEEGLLA 396 (656)
T ss_pred HHhChhhchhhHHHHHHH
Confidence 999997 44556655544
No 20
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.75 E-value=1.1e-05 Score=94.18 Aligned_cols=335 Identities=14% Similarity=0.115 Sum_probs=201.9
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD 845 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~ 845 (1134)
.+..+|..+.+++...|++-+.|..|+..|.+..+++...++|.++|..+-. ..||..|...-.+.++.-.
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn---------lDLW~lYl~YVR~~~~~~~ 104 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN---------LDLWKLYLSYVRETKGKLF 104 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh---------HhHHHHHHHHHHHHccCcc
Confidence 5788999999999999999999999999999999999999999999975531 2466666554443322111
Q ss_pred --CchHHHHHHH-HHhcCCCC----CCCCc----------cCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHH
Q 001167 846 --PDSSLRAIHV-LSCLGSGS----TYTPF----------KCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALI 908 (1134)
Q Consensus 846 --~e~~~rAi~i-L~~l~~~~----~~~~~----------~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~ 908 (1134)
++.+..|-.. |...+-.. .++.+ +.=...-.|-..|++|+.++..-. .....+|
T Consensus 105 ~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm---------~nlEkLW 175 (656)
T KOG1914|consen 105 GYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM---------HNLEKLW 175 (656)
T ss_pred hHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc---------ccHHHHH
Confidence 1223344332 22333111 11111 000012357778888888753210 1223455
Q ss_pred HHHHHHHHHhc-------------CHHHHHHHHHHHHHhhc----------CccccCCccHHHHHHHHHHHHHHhhcc--
Q 001167 909 CSAALFEELTN-------------GWTAGIEVLHQAFAMVL----------PERRSCSHQLEFLFNFNVRMLQRHHKQ-- 963 (1134)
Q Consensus 909 ~~~Alfe~Lt~-------------~~~~A~~v~~~al~~~~----------~~~~~~~~~~E~L~~~~a~ll~~~~~~-- 963 (1134)
.-|..||.-.+ .+.+|+++|+....... +........-=.+|..+++.+.-..-+
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 56666655432 46788888876555421 110000111224566677766543221
Q ss_pred -CCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC--------------ChhHHHHHHHHHHhhCC--CHHHHHHHH
Q 001167 964 -LSL--STVWETTLHGLQIYPYSPKLFNTLVEISNLYT--------------TPNKLRWIFDLYCHKKP--SLVVSLFAL 1024 (1134)
Q Consensus 964 -~~l--~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~--------------~~~raR~il~~~~~~~p--s~~~wlfaI 1024 (1134)
+.+ +++-=.++++|.-++..+.+|..|.+.-...+ ..++++.+|++++..-. ...+..-+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 34444678888888999888876665432111 25678888888764322 111111111
Q ss_pred HHHHH-------------------------------------cCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHh
Q 001167 1025 AFEMS-------------------------------------RKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYI 1067 (1134)
Q Consensus 1025 ~~E~~-------------------------------------r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~ 1067 (1134)
.+|.. |....+.||.+|-+|-+....+|.+-+-.+||+|-..
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 22211 2245688888888888877777777777777777653
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-----------------hhhccChHHHHHHHHHhhhcCc
Q 001167 1068 ASNPFAARRIFFRAIHACPWSKRLWLDGFLK-----------------LNSILTAKELSDLQEVMRDKEL 1120 (1134)
Q Consensus 1068 ~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~-----------------l~~~~~~~EL~~l~dvM~EKeL 1120 (1134)
++.+-|-+||.-+|...+.+.+.-+..+.. +.+++++++..+|++-|.|=|-
T Consensus 415 -kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred -CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 678888888888888888888765554432 3344677788888888877553
No 21
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.73 E-value=4.5e-06 Score=99.25 Aligned_cols=290 Identities=18% Similarity=0.183 Sum_probs=178.1
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
++.+|.+.-..|.++|....+|.+||..|.+-|+.+.+-+||++++...| .+-.+|+.|..+.... +++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip--------~SvdlW~~Y~~f~~n~-~~d-- 129 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP--------LSVDLWLSYLAFLKNN-NGD-- 129 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHhcc-CCC--
Confidence 46678888999999999999999999999999999999999999999887 3457999998775542 111
Q ss_pred chHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHH
Q 001167 847 DSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIE 926 (1134)
Q Consensus 847 e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~ 926 (1134)
+.. .|..|+.+...+ + ..-.+..+|..|.-||...+++.....
T Consensus 130 ---------------------------~~~---lr~~fe~A~~~v--G-----~dF~S~~lWdkyie~en~qks~k~v~~ 172 (577)
T KOG1258|consen 130 ---------------------------PET---LRDLFERAKSYV--G-----LDFLSDPLWDKYIEFENGQKSWKRVAN 172 (577)
T ss_pred ---------------------------HHH---HHHHHHHHHHhc--c-----cchhccHHHHHHHHHHhccccHHHHHH
Confidence 111 255566655332 0 011234677788888888888999999
Q ss_pred HHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhcc--CCH---HHHHHH----------------HHHHHHh--CCCC
Q 001167 927 VLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQ--LSL---STVWET----------------TLHGLQI--YPYS 983 (1134)
Q Consensus 927 v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~--~~l---~~~R~~----------------l~~aL~~--fP~N 983 (1134)
||++.++.-. ......+..+.+++..+.-+ .++ ..++.. ++.++.. -|.+
T Consensus 173 iyeRileiP~-------~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~ 245 (577)
T KOG1258|consen 173 IYERILEIPL-------HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSK 245 (577)
T ss_pred HHHHHHhhhh-------hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccc
Confidence 9998877421 12333444444443321100 000 011111 1111110 0111
Q ss_pred H-----HHHHHHHHH----HhhCCChhHHHHHHHHHHhhC-----C----CHHHHHHHHHHHHHcCCCchHHHHHHHHHh
Q 001167 984 P-----KLFNTLVEI----SNLYTTPNKLRWIFDLYCHKK-----P----SLVVSLFALAFEMSRKGPPHRIRGLFERAL 1045 (1134)
Q Consensus 984 ~-----~ll~~~~~l----E~~~~~~~raR~il~~~~~~~-----p----s~~~wlfaI~~E~~r~g~~~raRalFErAl 1045 (1134)
. ..+..++.+ ......+...|..++.++... | -...|..+..+|+.. |+.+++.-+|||++
T Consensus 246 ~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~-g~~~~~~~l~ercl 324 (577)
T KOG1258|consen 246 SLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITL-GDFSRVFILFERCL 324 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhc-ccHHHHHHHHHHHH
Confidence 0 011111111 001111222344444443321 1 346899999999988 89999999999999
Q ss_pred cCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHhhhccChHHHHHHHHHh
Q 001167 1046 ANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIH-ACPWSKRLWLDGFLKLNSILTAKELSDLQEVM 1115 (1134)
Q Consensus 1046 ~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~-~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM 1115 (1134)
- +|.+-...|.-|+++.... |..+-|+.++.||.+ +||....|=+..-.-=..+.+....+.+++..
T Consensus 325 i--~cA~Y~efWiky~~~m~~~-~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 325 I--PCALYDEFWIKYARWMESS-GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred h--HHhhhHHHHHHHHHHHHHc-CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 8 8999999999999999886 888999999999888 57766655443332112233444555554443
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.68 E-value=1.6e-07 Score=105.69 Aligned_cols=253 Identities=13% Similarity=0.032 Sum_probs=97.3
Q ss_pred CCCCChHHHHHHHhhhc--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCC
Q 001167 765 CSVTPCQPLAKGLLKSD--RQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNS 842 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~--~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~ 842 (1134)
.++..|-++.+..+... |++..+|..+|.+.+..|+.+.|+.+|++.+...+.. +..+..++.+ ...++
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~--------~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN--------PQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccccccccc-ccccc
Confidence 34666777776555543 7778888888888888888888888888777655421 1223333333 22211
Q ss_pred CCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHH
Q 001167 843 GSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWT 922 (1134)
Q Consensus 843 ~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~ 922 (1134)
..+|+.++.. .|+.. ....++..++...+..+.++
T Consensus 93 ------~~~A~~~~~~------------------------~~~~~---------------~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 93 ------PEEALKLAEK------------------------AYERD---------------GDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ------cccccccccc------------------------ccccc---------------cccchhhHHHHHHHHHhHHH
Confidence 2344433211 11100 00111112223334456788
Q ss_pred HHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhH
Q 001167 923 AGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNK 1002 (1134)
Q Consensus 923 ~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~r 1002 (1134)
.+..+++.+.... .......+|..++.+.... +....+...+.++|...|+|+.++..++.+....+..+.
T Consensus 128 ~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~---G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 128 EAEELLEKLEELP------AAPDSARFWLALAEIYEQL---GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHHHHHHHHH-T---------T-HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence 8888888766421 1124567888888877553 457789999999999999999999888888777788888
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 001167 1003 LRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRA 1081 (1134)
Q Consensus 1003 aR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RA 1081 (1134)
++.++.......| +..+|.......+.. |....|...|++++. ..+.++.+...|....... |+.+.|..|..++
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~-g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALK--LNPDDPLWLLAYADALEQA-GRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhccc-ccccccccccccccc--ccccccccccccccccccc-ccccccccccccc
Confidence 9999988776643 333443222222233 788999999999998 6677888999999988874 9999999999998
Q ss_pred HHh
Q 001167 1082 IHA 1084 (1134)
Q Consensus 1082 L~~ 1084 (1134)
++.
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 864
No 23
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.62 E-value=5.3e-05 Score=88.20 Aligned_cols=97 Identities=16% Similarity=0.048 Sum_probs=73.2
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhhcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHc-CChHHHHH
Q 001167 728 LRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFF-GNIDHARR 806 (1134)
Q Consensus 728 v~~~l~~~~~~~~~~~~l~e~~l~~~~l~~~~~~~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~-Gn~e~ARk 806 (1134)
|...++.....|+++-. .|.-++.++++. ..+...++++-.+|..+|+|..||.--|..|+.- -|++.||.
T Consensus 90 Iv~lyr~at~rf~~D~~-------lW~~yi~f~kk~-~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVK-------LWLSYIAFCKKK-KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHhcCCCHH-------HHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHH
Confidence 44455566667877421 111233333322 1277889999999999999999999999999974 57999999
Q ss_pred HHHHHHHhccCCchhccCChHHHHHHHHHHHHhc
Q 001167 807 VFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSS 840 (1134)
Q Consensus 807 Vf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~ 840 (1134)
+|.++|.+.| +++.||..|..||+..
T Consensus 162 lflrgLR~np--------dsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 162 LFLRGLRFNP--------DSPKLWKEYFRMELMY 187 (568)
T ss_pred HHHHHhhcCC--------CChHHHHHHHHHHHHH
Confidence 9999999998 4678999999999864
No 24
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=2.7e-06 Score=107.50 Aligned_cols=210 Identities=13% Similarity=0.050 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH
Q 001167 905 IALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP 984 (1134)
Q Consensus 905 v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~ 984 (1134)
..+|+.|.-|..-.+.+++||++.++|+...... .....=.+|+.+..|+-.+++ -..+.+.+++|.+.|---+
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~---eesl~kVFeRAcqycd~~~ 1531 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGT---EESLKKVFERACQYCDAYT 1531 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCc---HHHHHHHHHHHHHhcchHH
Confidence 4456688777777789999999999999975321 011223578888888876652 2334455555554432222
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q 001167 985 KLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAY 1063 (1134)
Q Consensus 985 ~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~f 1063 (1134)
. +..++.+.....-.+.|-.+|+.++++.. ....|+.++.+=+.+ .....||.++.||+..-+-+....+-.-++++
T Consensus 1532 V-~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 V-HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred H-HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 2 22233333333334445555555554444 445555555554433 34455555555555522222245555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcCcccc
Q 001167 1064 EVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLR 1123 (1134)
Q Consensus 1064 E~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKeLRir 1123 (1134)
|... |..+|+|.+|.--+.+-|.=+.|||-.+..-....+++-+++|++-..++.|+++
T Consensus 1610 EFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1610 EFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred Hhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5553 5555555555555555555555555555443344445555555555555555554
No 25
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.57 E-value=0.00023 Score=85.13 Aligned_cols=374 Identities=15% Similarity=0.095 Sum_probs=232.1
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhhcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHH-HcCChH
Q 001167 724 MMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREA-FFGNID 802 (1134)
Q Consensus 724 ~~~~v~~~l~~~~~~~~~~~~l~e~~l~~~~l~~~~~~~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~-~~Gn~e 802 (1134)
.++.+|.+.-..+..||--+..-.. +..++.. -+..+.+.++..+-+...|.++.||..|..+-. .+|+.+
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~k-------fA~~E~k-lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKK-------FADYEYK-LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHH-------HHHHHHH-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHH
Confidence 4578888888877778753322111 1111111 234677899999999999999999999988766 478999
Q ss_pred HHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCC--------------------
Q 001167 803 HARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSG-------------------- 862 (1134)
Q Consensus 803 ~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~-------------------- 862 (1134)
.-|..|++|.++... .-.++.||..|.+.|..+.+-. .+..++..+...|..
T Consensus 132 ~lr~~fe~A~~~vG~-----dF~S~~lWdkyie~en~qks~k---~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~ 203 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGL-----DFLSDPLWDKYIEFENGQKSWK---RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKI 203 (577)
T ss_pred HHHHHHHHHHHhccc-----chhccHHHHHHHHHHhccccHH---HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhh
Confidence 999999999998862 2245679999999985543211 111111111111100
Q ss_pred -------------CC------C--CCc---------cCCCC-----hhHHHH----HH-HHHHHHHHHHHHHh--hhc--
Q 001167 863 -------------ST------Y--TPF---------KCQPS-----NVQVLR----AH-QGYMERIKAVRSAW--LRG-- 898 (1134)
Q Consensus 863 -------------~~------~--~~~---------~~~~s-----~~~ILk----Ar-~~~~~~l~~~~s~l--~~~-- 898 (1134)
.. . .+. ...++ ...+++ .+ +.|...+..+-..| ..+
T Consensus 204 l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 00 0 000 00000 000111 11 11111111110011 000
Q ss_pred -------CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHH
Q 001167 899 -------AVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWE 971 (1134)
Q Consensus 899 -------~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~ 971 (1134)
.+...-..-|..|..|+.-.++++.+.-.|++++-. +..-+..|..|++.+.-. ++...+..
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~---~~~~~~~~ 352 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESS---GDVSLANN 352 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHc---CchhHHHH
Confidence 011122345668888888888999999999988664 345688999999998654 44555777
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHH-HHHHHHHHHHcCCCchHHH--HHHHHHhcC
Q 001167 972 TTLHGLQIY-PYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVV-SLFALAFEMSRKGPPHRIR--GLFERALAN 1047 (1134)
Q Consensus 972 ~l~~aL~~f-P~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~-wlfaI~~E~~r~g~~~raR--alFErAl~s 1047 (1134)
.+..+.+.+ |+-+.+-..++.++...+++.-||.+|++.....|++.. -++.|.+|..+ |+...+. ..+...+..
T Consensus 353 ~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~-~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 353 VLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK-GNLEDANYKNELYSSIYE 431 (577)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh-cchhhhhHHHHHHHHhcc
Confidence 777777765 777877778889999999999999999999988887644 47888888876 5555444 233333322
Q ss_pred CCCCCCH---HHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcCccccc
Q 001167 1048 DTVRCSV---VLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRT 1124 (1134)
Q Consensus 1048 ~~~~~s~---~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKeLRir~ 1124 (1134)
.-.++. .+-.-|++|--...+..+.|+.++..|+...|.+|.+|++-+.-.-..=+..| .++++-|..++++.-.
T Consensus 432 -~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e-~d~~e~~~~~~~~~~~ 509 (577)
T KOG1258|consen 432 -GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE-YDLLEPIDWKELKMLI 509 (577)
T ss_pred -cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh-hhhhhhHHHHHHhhhc
Confidence 123333 34444555544444788999999999999999999999888763211101222 4678888888887766
Q ss_pred chH
Q 001167 1125 DIY 1127 (1134)
Q Consensus 1125 dle 1127 (1134)
+-+
T Consensus 510 ~~~ 512 (577)
T KOG1258|consen 510 DFD 512 (577)
T ss_pred ccc
Confidence 554
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.52 E-value=0.00039 Score=89.59 Aligned_cols=319 Identities=10% Similarity=-0.097 Sum_probs=192.3
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
......|...++.+++.+|++.. |..+|.+....|+++.|..+|++++...|. ...++..++.+....+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--------~~~~~~~la~~l~~~~-- 164 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--------TQQYPTEYVQALRNNR-- 164 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCC--
Confidence 34578899999999999999999 999999999999999999999999998883 3456666777665443
Q ss_pred CCCchHHHHHHHHHhcCCCCCCC------Ccc---------CCCChhHH---HHHHHHHHHHHHHHHHHhhhcCCCch--
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYT------PFK---------CQPSNVQV---LRAHQGYMERIKAVRSAWLRGAVSDQ-- 903 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~------~~~---------~~~s~~~I---LkAr~~~~~~l~~~~s~l~~~~~~~~-- 903 (1134)
....|+..+..+...+.+. +.. .......+ .+|...|+..+.. +. ..+...
T Consensus 165 ----~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~----~~-~~p~~~~~ 235 (765)
T PRK10049 165 ----LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL----WH-DNPDATAD 235 (765)
T ss_pred ----ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh----cc-cCCccchH
Confidence 2445776665432210000 000 00000011 2233333332211 00 111111
Q ss_pred HH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC
Q 001167 904 SI-ALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 904 ~v-~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~ 982 (1134)
.. ..+...+.+ +..+.++.|+..|++++..-.+ .+..-..|. +.+... ...+.++...+.+++..-|.
T Consensus 236 ~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~-----~P~~a~~~l--a~~yl~---~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 236 YQRARIDRLGAL-LARDRYKDVISEYQRLKAEGQI-----IPPWAQRWV--ASAYLK---LHQPEKAQSILTELFYHPET 304 (765)
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccCCC-----CCHHHHHHH--HHHHHh---cCCcHHHHHHHHHHhhcCCC
Confidence 11 111112222 3446789999999987664210 123333332 222221 24577888889998888877
Q ss_pred CH----HHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----------------HHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 983 SP----KLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS----------------LVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 983 N~----~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps----------------~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+. .....++......+..+.+..+++++....|. ...+...+..-... |....|..+|+
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~ 383 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRAR 383 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 61 22222222234557789999999988876551 11222222222233 78899999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1043 RALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
+++. ..|.++.+|.......... |++.+|..+|.+|+..-|.+..+++......-..=..++...+++-+.+
T Consensus 384 ~al~--~~P~n~~l~~~lA~l~~~~-g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 384 ELAY--NAPGNQGLRIDYASVLQAR-GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHH--hCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9998 5677899999999888775 9999999999999999999887776554322111123444444444443
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.50 E-value=0.00023 Score=90.05 Aligned_cols=295 Identities=10% Similarity=-0.061 Sum_probs=194.3
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
......|..++...|..+|.+...+...+......|+++.|...|++++...|.. ...|...+.+....|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~--------~~a~~~la~~l~~~g~- 125 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ--------PEDVLLVASVLLKSKQ- 125 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHcCC-
Confidence 4567889999999999999999999999999999999999999999999988832 3455666666666543
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCC--CChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQ--PSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGW 921 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~--~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~ 921 (1134)
...|+..+...-.- .|.... ...+.++....-+++++.... .+.....+.. ..+. ..+ ..+..+.+
T Consensus 126 -----~~~Ai~~l~~Al~l---~P~~~~a~~~la~~l~~~g~~~eA~~~~~-~~~~~~P~~~-~a~~-~~~-~l~~~g~~ 193 (656)
T PRK15174 126 -----YATVADLAEQAWLA---FSGNSQIFALHLRTLVLMDKELQAISLAR-TQAQEVPPRG-DMIA-TCL-SFLNKSRL 193 (656)
T ss_pred -----HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCChHHHHHHHH-HHHHhCCCCH-HHHH-HHH-HHHHcCCH
Confidence 55677666433110 110000 001111111112223322211 1111111111 1111 111 23446789
Q ss_pred HHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChh
Q 001167 922 TAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPN 1001 (1134)
Q Consensus 922 ~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~ 1001 (1134)
+.|..+|.+++...+. ..+..+...+..+.. .+....+...+.+++...|.+...+..+...-...+..+
T Consensus 194 ~eA~~~~~~~l~~~~~-------~~~~~~~~l~~~l~~---~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 194 PEDHDLARALLPFFAL-------ERQESAGLAVDTLCA---VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHHHHHHHHhcCCC-------cchhHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch
Confidence 9999999988765321 122233223333322 345677888999999999999988877776666666655
Q ss_pred ----HHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 1002 ----KLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 1002 ----raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
.+...|++++...| +...|......-... |....|...|++|+. ..+.++.+|..+....... |+++.|..
T Consensus 264 eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~-G~~~eA~~ 339 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT-GQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQV-GQYTAASD 339 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 48999999999888 445554333333334 789999999999998 5677888998888877775 99999999
Q ss_pred HHHHHHHhCCCcHHHHH
Q 001167 1077 IFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1077 Vf~RAL~~CPwsK~L~m 1093 (1134)
.|.+++...|.....++
T Consensus 340 ~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 340 EFVQLAREKGVTSKWNR 356 (656)
T ss_pred HHHHHHHhCccchHHHH
Confidence 99999999998765444
No 28
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.7e-06 Score=100.31 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 001167 966 LSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERA 1044 (1134)
Q Consensus 966 l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErA 1044 (1134)
+.++-.++.+|+..||.+..||..|+.+-.+.+...++-.+|.+++..+| ++.+|+.|..+|...+.++.++|++|-+|
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 35677889999999999999999999998887889999999999999998 78999999999998877899999999999
Q ss_pred hcCCCCCCCHHHHHHHHHhHHHhc
Q 001167 1045 LANDTVRCSVVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 1045 l~s~~~~~s~~LWr~YI~fE~~~~ 1068 (1134)
|. .++.|+.||..|.++|+...
T Consensus 167 LR--~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 167 LR--FNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred hh--cCCCChHHHHHHHHHHHHHH
Confidence 99 89999999999999999753
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.39 E-value=0.0006 Score=91.83 Aligned_cols=315 Identities=11% Similarity=-0.045 Sum_probs=195.4
Q ss_pred hhhhcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhcc--------CChHHHH
Q 001167 759 KMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLK--------SNAPLLY 830 (1134)
Q Consensus 759 ~~~~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~--------~~~~~lw 830 (1134)
..|......+.|++...+++..+|+|..++..-+++....|+++.|.+.+++++...|..+.-.+ ......+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhH
Confidence 34445566788999999999999999999999999999999999999999999999885321000 0000012
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCc-c------CCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCch
Q 001167 831 LWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPF-K------CQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQ 903 (1134)
Q Consensus 831 l~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~-~------~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~ 903 (1134)
+..+.+....+ ..+.|+..+..+-...+-.+. . ........-.|...|+..+.. .+.+
T Consensus 116 l~~A~ll~~~g------~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--------~P~~- 180 (1157)
T PRK11447 116 LQQARLLATTG------RTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--------YPGN- 180 (1157)
T ss_pred HHHHHHHHhCC------CHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--------CCCC-
Confidence 33444544443 266788777554222110000 0 000112222344444443322 1222
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCc------------cccCCccHHHHHH--------------HHHHHH
Q 001167 904 SIALICSAALFEELTNGWTAGIEVLHQAFAMVLPE------------RRSCSHQLEFLFN--------------FNVRML 957 (1134)
Q Consensus 904 ~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~------------~~~~~~~~E~L~~--------------~~a~ll 957 (1134)
..+...+|.+.+..+..+.|+..|++++...... .....+.....+. ....+.
T Consensus 181 -~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 181 -TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 2233355666667778888888888775421000 0000000000000 000000
Q ss_pred -----------------HHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH---
Q 001167 958 -----------------QRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL--- 1017 (1134)
Q Consensus 958 -----------------~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~--- 1017 (1134)
..+...+.+..+...+.++|...|.+...+..+...-...+..+.++..|++++...|..
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 001123456778899999999999999988877777778899999999999999877632
Q ss_pred HHH----------HHH--HHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhC
Q 001167 1018 VVS----------LFA--LAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHAC 1085 (1134)
Q Consensus 1018 ~~w----------lfa--I~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~C 1085 (1134)
..| +.. ....+.. |....|+..|++|+. ..+.++..+.......... |+++.|...|.+|++..
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~Al~--~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKA-NNLAQAERLYQQARQ--VDNTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRMD 415 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC
Confidence 222 111 1111223 789999999999998 4566777777766666665 99999999999999999
Q ss_pred CCcHHHHH
Q 001167 1086 PWSKRLWL 1093 (1134)
Q Consensus 1086 PwsK~L~m 1093 (1134)
|.+...+.
T Consensus 416 p~~~~a~~ 423 (1157)
T PRK11447 416 PGNTNAVR 423 (1157)
T ss_pred CCCHHHHH
Confidence 99876654
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.34 E-value=0.00058 Score=91.95 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=49.2
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
..+...|.+.++.+++.+|++...+...|.+....|+++.|.+.|+.|+...|
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44578899999999999999999999999999999999999999999999887
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.33 E-value=3.7e-06 Score=94.77 Aligned_cols=247 Identities=14% Similarity=0.019 Sum_probs=97.4
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 001167 781 DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSI-EGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~-~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l 859 (1134)
+|. .....+|.+.+..|+++.|.+|+.+++... +. ....+|..++.+-+..+. ...|+.....+
T Consensus 6 ~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~-------~~~~~~~~~a~La~~~~~------~~~A~~ay~~l 70 (280)
T PF13429_consen 6 GPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPP-------DDPEYWRLLADLAWSLGD------YDEAIEAYEKL 70 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc--ccccccccccccccccccccccccccccccccc-------cccccccccccccccccc------ccccccccccc
Confidence 455 344588999999999999999998776554 21 234688888888776543 22343332211
Q ss_pred CCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCcc
Q 001167 860 GSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPER 939 (1134)
Q Consensus 860 ~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~ 939 (1134)
+... .........++.+ +..++++.|..++..++...
T Consensus 71 ----------------------------~~~~----------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---- 107 (280)
T PF13429_consen 71 ----------------------------LASD----------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD---- 107 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------cccc----------ccccccccccccc-cccccccccccccccccccc----
Confidence 1000 0000001111222 34567888888888776542
Q ss_pred ccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-C
Q 001167 940 RSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGL--QIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-S 1016 (1134)
Q Consensus 940 ~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL--~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s 1016 (1134)
.....+..++.+.... .....+..++.++. ..+|.++.+|..++.+..+.|..+++...|++++...| +
T Consensus 108 -----~~~~~l~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~ 179 (280)
T PF13429_consen 108 -----GDPRYLLSALQLYYRL---GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD 179 (280)
T ss_dssp ---------------H-HHHT---T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-
T ss_pred -----cccchhhHHHHHHHHH---hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 1123344444443322 35667777777744 45688999999999999899999999999999999988 4
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1017 LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1017 ~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
..++...+++-+.. |....++.+++.... ..+.++.+|..|....... |+.+.|..+|.+++..-|.+..+.+.-.
T Consensus 180 ~~~~~~l~~~li~~-~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 180 PDARNALAWLLIDM-GDYDEAREALKRLLK--AAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWLLAYA 255 (280)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhccc-cccccccccccccccccccccccccccc
Confidence 56665555554444 677888899988887 3366777999998888875 9999999999999999998886554333
Q ss_pred H
Q 001167 1097 L 1097 (1134)
Q Consensus 1097 ~ 1097 (1134)
.
T Consensus 256 ~ 256 (280)
T PF13429_consen 256 D 256 (280)
T ss_dssp H
T ss_pred c
Confidence 3
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.26 E-value=0.0019 Score=77.10 Aligned_cols=266 Identities=13% Similarity=-0.012 Sum_probs=151.2
Q ss_pred hcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcC
Q 001167 762 LSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSN 841 (1134)
Q Consensus 762 ~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~ 841 (1134)
....+...|++.+....+..|+...-+.--|+.....|+++.|.+.|..++...|. ....+.+.++++.+..+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-------~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-------DNILVEIARTRILLAQN 167 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-------CchHHHHHHHHHHHHCC
Confidence 34667788899988888888888888888899999999999999999999876662 11235666788887765
Q ss_pred CCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCH
Q 001167 842 SGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGW 921 (1134)
Q Consensus 842 ~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~ 921 (1134)
. .+.|+..+..+-...+- ... .....+......+++
T Consensus 168 ~------~~~Al~~l~~l~~~~P~--------~~~------------------------------~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 168 E------LHAARHGVDKLLEMAPR--------HKE------------------------------VLKLAEEAYIRSGAW 203 (409)
T ss_pred C------HHHHHHHHHHHHHhCCC--------CHH------------------------------HHHHHHHHHHHHhhH
Confidence 3 55666665443211110 001 111222333344566
Q ss_pred HHHHHHHHHHHHhhcCccccCCccHHHHH-HHHHHHHHHhhccCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHhh
Q 001167 922 TAGIEVLHQAFAMVLPERRSCSHQLEFLF-NFNVRMLQRHHKQLSLSTVWETTLHGLQIYP----YSPKLFNTLVEISNL 996 (1134)
Q Consensus 922 ~~A~~v~~~al~~~~~~~~~~~~~~E~L~-~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP----~N~~ll~~~~~lE~~ 996 (1134)
++|...+.+..+.-... ......+. ..+..++..... ....+.+.......| +++.++..++..-..
T Consensus 204 ~~a~~~l~~l~k~~~~~----~~~~~~l~~~a~~~~l~~~~~----~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFD----DEEFADLEQKAEIGLLDEAMA----DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 66666666555431100 00111111 111111111000 011233444444455 466666666666666
Q ss_pred CCChhHHHHHHHHHHhhCCCHHH---HHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCH--HHHHHHHHhHHHhcCCH
Q 001167 997 YTTPNKLRWIFDLYCHKKPSLVV---SLFALAFEMSRKGPPHRIRGLFERALANDTVRCSV--VLWRWYIAYEVYIASNP 1071 (1134)
Q Consensus 997 ~~~~~raR~il~~~~~~~ps~~~---wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~--~LWr~YI~fE~~~~~n~ 1071 (1134)
.+..+.+..+++++..+.|.... +++.....+. +++.+.+...+|+++. ..+.++ .+-..|-....+. |++
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~-~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~-~~~ 351 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK-PEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKH-GEF 351 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC-CCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHc-ccH
Confidence 67777777777777776553221 1222222222 2566777777777776 445555 6666666666664 777
Q ss_pred HHHHHHHH--HHHHhCCCcHH
Q 001167 1072 FAARRIFF--RAIHACPWSKR 1090 (1134)
Q Consensus 1072 ~rAR~Vf~--RAL~~CPwsK~ 1090 (1134)
++|+..|. +++...|....
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHH
Confidence 77777777 46666675554
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.19 E-value=0.0021 Score=76.55 Aligned_cols=245 Identities=10% Similarity=0.010 Sum_probs=146.0
Q ss_pred CCCCCChHHHHHHHhhhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDV-LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNS 842 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl-~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~ 842 (1134)
..+...|..+.....+.+|++. .....-|++....|+++.|.++++.++...|.. +.+...-+.+....|
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~--------~~al~ll~~~~~~~g- 201 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH--------PEVLRLAEQAYIRTG- 201 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHH-
Confidence 4456677777777777777763 333344777778888888888888888777632 223333334444433
Q ss_pred CCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHH-HHHHH------------HHHHHHHHhhhcCCCchHHHHHH
Q 001167 843 GSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAH-QGYME------------RIKAVRSAWLRGAVSDQSIALIC 909 (1134)
Q Consensus 843 ~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr-~~~~~------------~l~~~~s~l~~~~~~~~~v~l~~ 909 (1134)
..+.|+.+|..+...... ++....+-+ ..|.. .+...+..+.... .....+..
T Consensus 202 -----dw~~a~~~l~~l~k~~~~-------~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~ 267 (398)
T PRK10747 202 -----AWSSLLDILPSMAKAHVG-------DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQV 267 (398)
T ss_pred -----hHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHH
Confidence 256777666554222111 111111111 11111 1111111111111 11234455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
+||......++.+.|..++++++.. +..+.+...++++. ..+..++...+++.++.+|+|+.++..
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~---------~~~~~l~~l~~~l~-----~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKR---------QYDERLVLLIPRLK-----TNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---------CCCHHHHHHHhhcc-----CCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 7777777778888888888877763 12344555555432 245667778888888888888888877
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
+..+-...+.++++|..|++++...|+...++......... |..+.+..+|.+++.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL-HKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 88888788888888888888888888776654333333334 677888888888875
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.16 E-value=0.0043 Score=73.90 Aligned_cols=266 Identities=11% Similarity=0.024 Sum_probs=162.3
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+.+.|+|.+...-+..++-...+...|..-...|+++.|...|..|....|. ...-..+.-+++.+..++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-------~~~~~~l~~a~l~l~~g~- 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN-------DQLPVEITRVRIQLARNE- 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-------chHHHHHHHHHHHHHCCC-
Confidence 334444554443322222223455666677777888888888888888775552 111122233566665543
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
...|+..+..+-...+ .... + ....+......+++++
T Consensus 169 -----~~~Al~~l~~~~~~~P--------~~~~----------------------------a--l~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 169 -----NHAARHGVDKLLEVAP--------RHPE----------------------------V--LRLAEQAYIRTGAWSS 205 (398)
T ss_pred -----HHHHHHHHHHHHhcCC--------CCHH----------------------------H--HHHHHHHHHHHHhHHH
Confidence 4566665543311111 0010 0 0011122233477888
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHH-HHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhH
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLF-NFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNK 1002 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~-~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~r 1002 (1134)
|..++.......... ......+. ..+..++.......+...+.......-..+|+++.+...|+..-...+..+.
T Consensus 206 a~~~l~~l~k~~~~~----~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 206 LLDILPSMAKAHVGD----EEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 888888766542110 01122121 2223333222222233344444444445678888888888888888899999
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHH
Q 001167 1003 LRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAI 1082 (1134)
Q Consensus 1003 aR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL 1082 (1134)
+..++++.....+...+.+....+ .. ++.+++....++.++ ..|.++.+..++-++.... +.+.+|+..|.+++
T Consensus 282 A~~~L~~~l~~~~~~~l~~l~~~l--~~-~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~-~~~~~A~~~le~al 355 (398)
T PRK10747 282 AQQIILDGLKRQYDERLVLLIPRL--KT-NNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKH-GEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhhc--cC-CChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 999999998877766655444433 33 788899999999998 6788999999999999985 99999999999999
Q ss_pred HhCCCcHH
Q 001167 1083 HACPWSKR 1090 (1134)
Q Consensus 1083 ~~CPwsK~ 1090 (1134)
..-|.+..
T Consensus 356 ~~~P~~~~ 363 (398)
T PRK10747 356 KQRPDAYD 363 (398)
T ss_pred hcCCCHHH
Confidence 99998877
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.12 E-value=0.0015 Score=77.91 Aligned_cols=251 Identities=11% Similarity=-0.016 Sum_probs=155.2
Q ss_pred CCCCCChHHHHHHHhhhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQD-VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNS 842 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~n-l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~ 842 (1134)
..+...|..+.+..++..|++ +.+-..+|++-...|+++.|+..++..++..|. ...++..++.+.+..++
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~--------~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR--------HKEVLKLAEEAYIRSGA 202 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHhh
Confidence 456778888998888888887 568888999999999999999999999998873 23466666777776653
Q ss_pred CCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHH----HH-HHHHH-----HHHHHHhhhcCCC--chHHHHHHH
Q 001167 843 GSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAH----QG-YMERI-----KAVRSAWLRGAVS--DQSIALICS 910 (1134)
Q Consensus 843 ~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr----~~-~~~~l-----~~~~s~l~~~~~~--~~~v~l~~~ 910 (1134)
.+.|+..|..+-.... .++.....++ .. +.+.. ......|.. .+. .....+..+
T Consensus 203 ------~~~a~~~l~~l~k~~~-------~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~-~p~~~~~~~~l~~~ 268 (409)
T TIGR00540 203 ------WQALDDIIDNMAKAGL-------FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN-QPRHRRHNIALKIA 268 (409)
T ss_pred ------HHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-CCHHHhCCHHHHHH
Confidence 6677777755422111 1222221111 11 11110 011111111 110 012445557
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH--HHHH
Q 001167 911 AALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP--KLFN 988 (1134)
Q Consensus 911 ~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~--~ll~ 988 (1134)
++....-.+..+.|.+++++++...++... ..-.++..+ .. ....+...+...++++++..|.|+ .++.
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~----~~~~~l~~~---~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRA----ISLPLCLPI---PR--LKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCccc----chhHHHHHh---hh--cCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 777666677889999999988886543210 000011111 11 112345678888889999999998 7777
Q ss_pred HHHHHHhhCCChhHHHHHHH--HHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 989 TLVEISNLYTTPNKLRWIFD--LYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 989 ~~~~lE~~~~~~~raR~il~--~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
.|.++..+.+.+++++..|+ ......|....+......-... |....|+.+|.+|+.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~-g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA-GDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 88888888888999999998 4555666554432222221223 678888888888865
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.08 E-value=0.0034 Score=80.98 Aligned_cols=308 Identities=12% Similarity=-0.065 Sum_probs=183.4
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHH-HHHHHHhcCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLW-YAEVELSSNS 842 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~-yaemEl~~~~ 842 (1134)
..+...|.+..+.+|+.+|++..++..||.+....|..+.|.+.++++.. .|.. . ...-+.. +..+.+....
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~----~--~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE----K--RDLEADAAAELVRLSFMP 201 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH----H--HHHHHHHHHHHHHhhccc
Confidence 34567899999999999999999999999999999999999999987765 3310 0 0000111 1111111110
Q ss_pred CC-CCchH---HHHHHHHHhcCCCCCCCCccCC-CChh-----HHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHH
Q 001167 843 GS-DPDSS---LRAIHVLSCLGSGSTYTPFKCQ-PSNV-----QVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAA 912 (1134)
Q Consensus 843 ~~-~~e~~---~rAi~iL~~l~~~~~~~~~~~~-~s~~-----~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~A 912 (1134)
.. ..+.+ ++|+..+..+-...+.+|.... .... ..+-.+.-+.+++......+..+...+.....+ ++
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la 279 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VA 279 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HH
Confidence 00 00112 4566554333111011111000 0000 111122234444433222122221111122222 24
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCC-----------
Q 001167 913 LFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYP----------- 981 (1134)
Q Consensus 913 lfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP----------- 981 (1134)
...+.++.+++|+.+|++++..- +... ....+... .+.+-+.....+..+...+.+.+...|
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~-p~~~--~~~~~~~~----~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHP-ETIA--DLSDEELA----DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcC-CCCC--CCChHHHH----HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 45555688999999999987642 1100 00112111 111111223456778888888888776
Q ss_pred --CCH--HHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHH
Q 001167 982 --YSP--KLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVL 1056 (1134)
Q Consensus 982 --~N~--~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~L 1056 (1134)
++. ..+..++.+-...+..+.+..+|++++...| ...+|+..+.....+ |...+|..+|++|+. ..|.+..+
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~-g~~~~A~~~l~~al~--l~Pd~~~l 429 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR-GWPRAAENELKKAEV--LEPRNINL 429 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCChHH
Confidence 332 2333455555667889999999999998877 566776666565556 789999999999998 55788889
Q ss_pred HHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1057 WRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1057 Wr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
+...+...... ++++.|..++.+++..-|-+..+
T Consensus 430 ~~~~a~~al~~-~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 430 EVEQAWTALDL-QEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCCHHH
Confidence 99988888875 99999999999999999998854
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.08 E-value=0.0072 Score=70.98 Aligned_cols=237 Identities=12% Similarity=-0.004 Sum_probs=152.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCC
Q 001167 792 ARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQ 871 (1134)
Q Consensus 792 A~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~ 871 (1134)
|......|+++.|..+|..++...|. ...+|...+.+....++ +..|+.++..+-....
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~------~~~A~~~~~~~l~~~~------- 100 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE--------TVELHLALGNLFRRRGE------VDRAIRIHQNLLSRPD------- 100 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHcCc------HHHHHHHHHHHhcCCC-------
Confidence 45566789999999999999987762 23456666666666543 6677777654311100
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHH
Q 001167 872 PSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFN 951 (1134)
Q Consensus 872 ~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~ 951 (1134)
..... + ...+...+...+..++++.|..+|++++... +.....+.
T Consensus 101 ~~~~~--~-------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~ 145 (389)
T PRK11788 101 LTREQ--R-------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEG--------DFAEGALQ 145 (389)
T ss_pred CCHHH--H-------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC--------cchHHHHH
Confidence 00000 0 0001122233344578999999999987641 22334444
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHHHHHHH
Q 001167 952 FNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK-----LFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVSLFALA 1025 (1134)
Q Consensus 952 ~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~-----ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~wlfaI~ 1025 (1134)
..+.+... .+....+.+.+.+.+...|.+.. ++..++......+..+.+..+|++++...|. ...++..+.
T Consensus 146 ~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 146 QLLEIYQQ---EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred HHHHHHHH---hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 44544432 35677788889999988887632 3333444445678899999999999887774 455544444
Q ss_pred HHHHcCCCchHHHHHHHHHhcCCCCCCC-HHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1026 FEMSRKGPPHRIRGLFERALANDTVRCS-VVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1026 ~E~~r~g~~~raRalFErAl~s~~~~~s-~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
.-... |....|..+|++++.. .+.+ ...|...+...... |+++.|..+|.+++...|....+
T Consensus 223 ~~~~~-g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~p~~~~~ 285 (389)
T PRK11788 223 LALAQ-GDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRALEEYPGADLL 285 (389)
T ss_pred HHHHC-CCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHH
Confidence 43344 7899999999999973 2333 34455555555554 89999999999999999987544
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.03 E-value=0.014 Score=77.04 Aligned_cols=331 Identities=11% Similarity=-0.008 Sum_probs=197.2
Q ss_pred CCCCChHHHHHHHhhh-cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 765 CSVTPCQPLAKGLLKS-DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~-~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
.+...|+++...+.+. ..-+...|+.......+.|+++.|.+||+........ .+ ...|...+......|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~------Pd-vvTynaLI~gy~k~G-- 521 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE------AN-VHTFGALIDGCARAG-- 521 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC------CC-HHHHHHHHHHHHHCc--
Confidence 3466777888777765 4456888999999999999999999999988654320 01 123444444444443
Q ss_pred CCCchHHHHHHHHHhcC-CCCCCCC--ccCC----CChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 001167 844 SDPDSSLRAIHVLSCLG-SGSTYTP--FKCQ----PSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEE 916 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~-~~~~~~~--~~~~----~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~ 916 (1134)
.+.+|+.++..+. .+..-+. +... .....+.+|.+.|.++... ..+..++.. .+....-.-.
T Consensus 522 ----~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-----~~gi~PD~v--TynaLI~ay~ 590 (1060)
T PLN03218 522 ----QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-----THPIDPDHI--TVGALMKACA 590 (1060)
T ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----cCCCCCcHH--HHHHHHHHHH
Confidence 2667777764431 1111000 0000 0123344555555544311 112222211 1111111122
Q ss_pred HhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 001167 917 LTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI--YPYSPKLFNTLVEIS 994 (1134)
Q Consensus 917 Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~--fP~N~~ll~~~~~lE 994 (1134)
-.+.++.|.++|+.....-. .+ ....|...+. -+.+.+.+..+..++.+.... .|+ ...|..++..-
T Consensus 591 k~G~ldeA~elf~~M~e~gi------~p-~~~tynsLI~---ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~ 659 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNI------KG-TPEVYTIAVN---SCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVA 659 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCC------CC-ChHHHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Confidence 24578999999987765311 11 1234443333 334445677788888776654 455 44566777777
Q ss_pred hhCCChhHHHHHHHHHHhh--CCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHH
Q 001167 995 NLYTTPNKLRWIFDLYCHK--KPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPF 1072 (1134)
Q Consensus 995 ~~~~~~~raR~il~~~~~~--~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~ 1072 (1134)
.+.+..+.+..+|..+... .|+...|...|..-. +.|....|..+|+..... ....+...|...|....+. |+++
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~-k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~-G~~e 736 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS-NAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEG-NQLP 736 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC-CCHH
Confidence 7788899999999988765 356666644443332 337889999999988753 2345678899999888874 9999
Q ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcCcccccchHHhh
Q 001167 1073 AARRIFFRAIHA--CPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEIL 1130 (1134)
Q Consensus 1073 rAR~Vf~RAL~~--CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKeLRir~dleE~l 1130 (1134)
.|..+|.+.... .|... .|.--+..+...=..++-..+++.|.++|+..-+.++..|
T Consensus 737 eAlelf~eM~~~Gi~Pd~~-Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTI-TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999976643 45433 3433333333333467888899999999987665555443
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.00 E-value=0.003 Score=66.92 Aligned_cols=189 Identities=11% Similarity=-0.075 Sum_probs=132.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLV 991 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~ 991 (1134)
+...+..++++.|...+++++...+ .....+...+.+.. ..+....+...+.+++...|.+...+..+.
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDP--------DDYLAYLALALYYQ---QLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4444557889999999999987532 22334444444433 235678899999999999999988887777
Q ss_pred HHHhhCCChhHHHHHHHHHHhhCC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc
Q 001167 992 EISNLYTTPNKLRWIFDLYCHKKP---SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~~p---s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~ 1068 (1134)
......+..+.+..+|.+++...+ ....|......-... |....+...|++++. ..+.++..|..+.......
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~- 182 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-GDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLR- 182 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHc-
Confidence 777778899999999999886532 223343222222333 789999999999998 4556777888877777765
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHh
Q 001167 1069 SNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVM 1115 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM 1115 (1134)
|++++|..+|.+++...|.....+..........=..++-..+.+.|
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999988776654444322222244445554444
No 40
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=0.0011 Score=81.62 Aligned_cols=259 Identities=17% Similarity=0.203 Sum_probs=148.1
Q ss_pred HhhhcCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHH
Q 001167 777 LLKSDRQDVLLCGVYARREAFFGNIDH---ARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAI 853 (1134)
Q Consensus 777 LLk~~~~nl~LW~aYA~lE~~~Gn~e~---ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi 853 (1134)
.|..++.++.....|..+-++.|+.+. ||..++.+... .+++|+.|+.=+....... ... ++
T Consensus 105 e~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl-----------~~~lWl~Wl~d~~~mt~s~---~~~-~v 169 (881)
T KOG0128|consen 105 ELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL-----------PPHLWLEWLKDELSMTQSE---ERK-EV 169 (881)
T ss_pred HhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----------ChHHHHHHHHHHHhhccCc---chh-HH
Confidence 334477778888888888888887764 55555554322 2479999887666432100 111 11
Q ss_pred HHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-------HhcCHHHHHH
Q 001167 854 HVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEE-------LTNGWTAGIE 926 (1134)
Q Consensus 854 ~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~-------Lt~~~~~A~~ 926 (1134)
.- .|+.++.+. ..+.+|+-++-|.+ ..++++..+.
T Consensus 170 ~~---------------------------~~ekal~dy-----------~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~ 211 (881)
T KOG0128|consen 170 EE---------------------------LFEKALGDY-----------NSVPIWEEVVNYLVGFGNVAKKSEDYKKERS 211 (881)
T ss_pred HH---------------------------HHHHHhccc-----------ccchHHHHHHHHHHhccccccccccchhhhH
Confidence 11 122222111 12333333333332 2356889999
Q ss_pred HHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHhhCCCh-----
Q 001167 927 VLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFN-TLVEISNLYTTP----- 1000 (1134)
Q Consensus 927 v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~-~~~~lE~~~~~~----- 1000 (1134)
+|++++..+.-+. -..-.+|.+|..+..-.....-.+++-.++...|. +|-...+.. .|.++ +..+..
T Consensus 212 vf~ral~s~g~~~----t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~-~~~D~~~~~~~~~~~-sk~h~~~~~~~ 285 (881)
T KOG0128|consen 212 VFERALRSLGSHI----TEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK-QPLDEDTRGWDLSEQ-SKAHVYDVETK 285 (881)
T ss_pred HHHHHHhhhhhhh----cccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-ccchhhhhHHHHHHH-HhcchHHHHhc
Confidence 9999998753321 13345676666555332211112233334444442 343322211 11111 211211
Q ss_pred ---------hHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCC
Q 001167 1001 ---------NKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASN 1070 (1134)
Q Consensus 1001 ---------~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n 1070 (1134)
...+-.+++.+...+ -...|+-+|.+|..- |.+-|+..++|||+. ..+-...+|+.|-.+.-...+-
T Consensus 286 ~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~-G~p~ri~l~~eR~~~--E~~~~~~~wi~y~~~~d~eLkv 362 (881)
T KOG0128|consen 286 KLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS-GDPVRIQLIEERAVA--EMVLDRALWIGYGVYLDTELKV 362 (881)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHH--hccccHHHHhhhhhhccccccc
Confidence 122333444444433 346799999999865 899999999999997 5666799999987665443355
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001167 1071 PFAARRIFFRAIHACPWSKRLWLDGFL 1097 (1134)
Q Consensus 1071 ~~rAR~Vf~RAL~~CPwsK~L~m~a~~ 1097 (1134)
..++-.++-||++.|||...||--+..
T Consensus 363 ~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 363 PQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred ccccccccchhhcCCchHHHHHHHHHH
Confidence 567888999999999999999966653
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.91 E-value=0.011 Score=77.59 Aligned_cols=149 Identities=16% Similarity=0.101 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHhhhhhhcccccccchhhHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhccCCHHH
Q 001167 262 RKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDV 341 (1134)
Q Consensus 262 ~r~~eln~~v~e~P~Di~~Wl~li~~Qd~~~~~~~~k~~~~~~~E~KlsilekAL~~~p~~~~Lll~~l~~~~~~w~~~~ 341 (1134)
.=...|++.++-+|++..+.+.|+.+--.. + ..+.-+..+++|++.+|+|..+.+.+-.. -..++
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~---g--------~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~k 126 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHF---G--------HDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVK 126 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---C--------CHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChh
Confidence 347789999999999999998887762111 1 12346778999999999998777664222 33345
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCCCCCCChHHHHHHH
Q 001167 342 LIRRWEKILMQHSG--SYKLWREFLRVVQGEFSRFKVSELRKMYAHAIQALSAACIKQFRQVNQTVKPASLDPAIIQLEL 419 (1134)
Q Consensus 342 l~~~W~~~l~~~p~--~~~LW~~yL~~~q~~~~~F~~~~~~~~y~~~l~~l~~~~~~~~~q~~~~~~~~~~~~~~~~~e~ 419 (1134)
-..--++++..+|+ .+.+|..++...|.-++ ..-+.+++.+|. . + ... ...++.+
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~-------y~q~eqAl~AL~-l--r---~~~-----~~~~~~v----- 183 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALR-------LAQLPVARAQLN-D--A---TFA-----ASPEGKT----- 183 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhh-------hhhHHHHHHHHH-H--h---hhC-----CCCCcHH-----
Confidence 56889999999997 55677777632221100 001244444443 2 1 111 0112211
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 001167 420 GLVDIFLSLCRLEWQAGYQELATALFQAEIEFS 452 (1134)
Q Consensus 420 ~~l~if~r~~~fl~qaG~~E~Ava~~QA~lE~n 452 (1134)
+. +...++-.+.|.++.|+.+++-+++.+
T Consensus 184 --L~--L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 184 --LR--TDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred --HH--HHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 11 122344557899999999999999987
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.91 E-value=0.0031 Score=80.59 Aligned_cols=304 Identities=16% Similarity=0.081 Sum_probs=183.9
Q ss_pred hHHHHHHHhhh-cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCch
Q 001167 770 CQPLAKGLLKS-DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDS 848 (1134)
Q Consensus 770 aRk~aK~LLk~-~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~ 848 (1134)
++++....++. ...+...|++...+..+.|+++.|++||+... . .+ ...|-.-+......| .
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~-------~~-~vt~n~li~~y~~~g------~ 305 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---E-------KT-TVAWNSMLAGYALHG------Y 305 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---C-------CC-hhHHHHHHHHHHhCC------C
Confidence 34444444443 34467788888888888999999999988642 1 01 123333333333333 2
Q ss_pred HHHHHHHHHhcC-CCCCCCCc--cCC----CChhHHHHHHHHHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHhc
Q 001167 849 SLRAIHVLSCLG-SGSTYTPF--KCQ----PSNVQVLRAHQGYMERIKAVRSAWLRGAVSD--QSIALICSAALFEELTN 919 (1134)
Q Consensus 849 ~~rAi~iL~~l~-~~~~~~~~--~~~----~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~--~~v~l~~~~Alfe~Lt~ 919 (1134)
.+.|+.++..+. .+..-+.. ... ...+.+..|++.+...++. |...+ .+..++..|+. .+
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k----~G 374 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSK----WG 374 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHH----CC
Confidence 557777764431 11110100 000 0122334455555544322 22222 22344444443 57
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhhC
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQ--IYPYSPKLFNTLVEISNLY 997 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~--~fP~N~~ll~~~~~lE~~~ 997 (1134)
.++.|..+|+.... +. -..|...+. -+++.+....+.+++.+.+. ..|+...| ..++.-....
T Consensus 375 ~~~~A~~vf~~m~~---~d--------~~t~n~lI~---~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~-~~ll~a~~~~ 439 (697)
T PLN03081 375 RMEDARNVFDRMPR---KN--------LISWNALIA---GYGNHGRGTKAVEMFERMIAEGVAPNHVTF-LAVLSACRYS 439 (697)
T ss_pred CHHHHHHHHHhCCC---CC--------eeeHHHHHH---HHHHcCCHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHHhcC
Confidence 79999999986532 11 112333332 33334556777777777554 45766554 4566666778
Q ss_pred CChhHHHHHHHHHHhh---CCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 998 TTPNKLRWIFDLYCHK---KPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~---~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
+..+.+..+|+..... .|....+...|..- .+.|....|..+|+..- ...+...|...+.-.... |+++.|
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l-~r~G~~~eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~-g~~~~a 513 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELL-GREGLLDEAYAMIRRAP----FKPTVNMWAALLTACRIH-KNLELG 513 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH-HhcCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHc-CCcHHH
Confidence 8999999999998764 35555554444332 24488999999998652 334577899999988875 999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcCccc
Q 001167 1075 RRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNL 1122 (1134)
Q Consensus 1075 R~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKeLRi 1122 (1134)
+.++.+.++..|.....|..-+..+...=..+|-.++++.|.+||++.
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 999999999999765556555544433345789999999999999963
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.85 E-value=0.0029 Score=75.40 Aligned_cols=309 Identities=14% Similarity=0.081 Sum_probs=165.2
Q ss_pred hhhhhcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHH
Q 001167 758 TKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVE 837 (1134)
Q Consensus 758 ~~~~~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemE 837 (1134)
++.++...+...|-.+.+..++..|..+.-|.-.|-.-...|+.+.|-+.|..||+..|-+-.-. ++ .--+.
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~-s~-------lgnLl 194 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCAR-SD-------LGNLL 194 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhh-cc-------hhHHH
Confidence 33344455566778888999999999999999999999999999999999999999887321100 00 00111
Q ss_pred HhcCCCC-CCchHHHHHHHHHhcCCCCCCCCcc-CCCChhHHHHHHHHHHHHH---------------------------
Q 001167 838 LSSNSGS-DPDSSLRAIHVLSCLGSGSTYTPFK-CQPSNVQVLRAHQGYMERI--------------------------- 888 (1134)
Q Consensus 838 l~~~~~~-~~e~~~rAi~iL~~l~~~~~~~~~~-~~~s~~~ILkAr~~~~~~l--------------------------- 888 (1134)
...|-.. ....+-+||.+=.|... .+.--+ .-...+.|..|-++|++++
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAi--awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAI--AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceee--eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 1111000 00112223222111100 000000 0113445555555555554
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHH
Q 001167 889 KAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLST 968 (1134)
Q Consensus 889 ~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~ 968 (1134)
......+... ++. .-..+..|-.-|-.+.++-|+..|+++++. .|.++.-+...+.-|... +.+..
T Consensus 273 s~Y~rAl~lr--pn~-A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~---G~V~e 338 (966)
T KOG4626|consen 273 SCYLRALNLR--PNH-AVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDK---GSVTE 338 (966)
T ss_pred HHHHHHHhcC--Ccc-hhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhc---cchHH
Confidence 2211111100 000 000001111112223466666666666653 344555565555555443 34556
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH-HHH-HHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 969 VWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL-VVS-LFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 969 ~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~-~~w-lfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
+-..+.++|..+|+...-..-+..+-...+.++.+-++|.++....|.. ... -.++-+. ++ |+...|..-|..||.
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k-qq-gnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK-QQ-GNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH-hc-ccHHHHHHHHHHHHh
Confidence 7777888888888877655445555555667778888888888777722 222 2222221 23 788888888888887
Q ss_pred CCCCCCCHHHHHHHHHh---HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhc
Q 001167 1047 NDTVRCSVVLWRWYIAY---EVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSI 1102 (1134)
Q Consensus 1047 s~~~~~s~~LWr~YI~f---E~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~ 1102 (1134)
. -|..+. .|... ...+ |+...|-+.+.|||+..| -|.+|+.-|.+.
T Consensus 417 I--~P~fAd---a~~NmGnt~ke~-g~v~~A~q~y~rAI~~nP----t~AeAhsNLasi 465 (966)
T KOG4626|consen 417 I--KPTFAD---ALSNMGNTYKEM-GDVSAAIQCYTRAIQINP----TFAEAHSNLASI 465 (966)
T ss_pred c--CchHHH---HHHhcchHHHHh-hhHHHHHHHHHHHHhcCc----HHHHHHhhHHHH
Confidence 3 233222 22221 1122 677888888888888888 566777665443
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0042 Score=72.55 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=147.7
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|..-....++.+|.+..||+.-|.+.....+.+.--++|+.|....|.- +.+|..-++|-+-.++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n--------~dvYyHRgQm~flL~q- 409 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN--------PDVYYHRGQMRFLLQQ- 409 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC--------CchhHhHHHHHHHHHH-
Confidence 4456778888888888899989999999999888888999999999998887732 3467666666554432
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
++.|+.= |+.++.- . +.+.+..+-.| ..+|.++.++.
T Consensus 410 -----~e~A~aD----------------------------F~Kai~L-----~---pe~~~~~iQl~--~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 410 -----YEEAIAD----------------------------FQKAISL-----D---PENAYAYIQLC--CALYRQHKIAE 446 (606)
T ss_pred -----HHHHHHH----------------------------HHHHhhc-----C---hhhhHHHHHHH--HHHHHHHHHHH
Confidence 3333321 1111100 0 00111122223 34677778888
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC------CHHHHH----HHHHH
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY------SPKLFN----TLVEI 993 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~------N~~ll~----~~~~l 993 (1134)
+...|+.+...++ .+-.++.+++.+|... ....++-+.+..++.+=|. |...+. +.++|
T Consensus 447 ~m~~Fee~kkkFP--------~~~Evy~~fAeiLtDq---qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 447 SMKTFEEAKKKFP--------NCPEVYNLFAEILTDQ---QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHhCC--------CCchHHHHHHHHHhhH---HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 8888888888763 3445777777777443 3456777788888888887 543221 12233
Q ss_pred HhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 994 SNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 994 E~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
- +.++++-.++.++++-.| |-....-...+|+++ |...+|..+||.++. -.++-..+-..|--.|.
T Consensus 516 k---~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~-~~i~eAielFEksa~--lArt~~E~~~a~s~aeA 582 (606)
T KOG0547|consen 516 K---EDINQAENLLRKAIELDPKCEQAYETLAQFELQR-GKIDEAIELFEKSAQ--LARTESEMVHAYSLAEA 582 (606)
T ss_pred h---hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH
Confidence 2 457777788888877777 556666666777777 677888888888776 22333444444444443
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.79 E-value=0.0053 Score=73.24 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=115.3
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
+.+..|...|.+++... +.+..-+...+.+-.. ++.+..+-.++..+|..||.-..-..-++.+-.+.+
T Consensus 334 G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E---~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYRE---QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred cchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHH---hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence 56777888888877753 2333222222222211 134556778899999999998776666667777889
Q ss_pred ChhHHHHHHHHHHhhCCCHH-HH--HHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHH
Q 001167 999 TPNKLRWIFDLYCHKKPSLV-VS--LFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAAR 1075 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~ps~~-~w--lfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR 1075 (1134)
..+.+-.-|..+++..|... .. +--.+-|+ |....|.+.|++||+ .+|..+.-.....-.-.. +||+..|-
T Consensus 403 nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~---g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kD-sGni~~AI 476 (966)
T KOG4626|consen 403 NLDDAIMCYKEALRIKPTFADALSNMGNTYKEM---GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKD-SGNIPEAI 476 (966)
T ss_pred cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh---hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhc-cCCcHHHH
Confidence 99999999999998888432 11 11223344 678899999999999 555544443333332233 59999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhhcc
Q 001167 1076 RIFFRAIHACPWSKRLWLDGFLKLNSIL 1103 (1134)
Q Consensus 1076 ~Vf~RAL~~CPwsK~L~m~a~~~l~~~~ 1103 (1134)
+-|..||..-|....-|.--...+.-+-
T Consensus 477 ~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 9999999999999998887777664443
No 46
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.77 E-value=0.0018 Score=74.72 Aligned_cols=151 Identities=21% Similarity=0.101 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCC
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTT 999 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~ 999 (1134)
.++.-+..|.+|+..-. -..|+||.-|-.++....+ ..+|+++.+-...|=..-. .|-+|..-...
T Consensus 176 rid~iR~~Y~ral~tP~-------~nleklW~dy~~fE~e~N~----~TarKfvge~sp~ym~ar~---~yqe~~nlt~G 241 (660)
T COG5107 176 RIDKIRNGYMRALQTPM-------GNLEKLWKDYENFELELNK----ITARKFVGETSPIYMSARQ---RYQEIQNLTRG 241 (660)
T ss_pred HHHHHHHHHHHHHcCcc-------ccHHHHHHHHHHHHHHHHH----HHHHHHhcccCHHHHHHHH---HHHHHHHHhcc
Confidence 47888999999987421 2479999999888764321 2355554432222211111 12222211111
Q ss_pred hhHHHHHHHHHHhhCC--CHHHHHHHHHHHHHcC----C--CchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCH
Q 001167 1000 PNKLRWIFDLYCHKKP--SLVVSLFALAFEMSRK----G--PPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNP 1071 (1134)
Q Consensus 1000 ~~raR~il~~~~~~~p--s~~~wlfaI~~E~~r~----g--~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~ 1071 (1134)
+.+.--++.+...+.+ +-.-|+-.|.+|+..+ + -..|+--+|+.++. -..-|+.+|--|-.+.+.. ++.
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~--y~~~~~evw~dys~Y~~~i-sd~ 318 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILD--YFYYAEEVWFDYSEYLIGI-SDK 318 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHhhc-cHH
Confidence 1111112222212222 3445999999998653 2 23688899999998 6788999999999999986 889
Q ss_pred HHHHHHHHHHHHhCCC
Q 001167 1072 FAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1072 ~rAR~Vf~RAL~~CPw 1087 (1134)
++|..+-.||+.-||.
T Consensus 319 q~al~tv~rg~~~sps 334 (660)
T COG5107 319 QKALKTVERGIEMSPS 334 (660)
T ss_pred HHHHHHHHhcccCCCc
Confidence 9999999999999997
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.77 E-value=0.0057 Score=64.81 Aligned_cols=185 Identities=11% Similarity=-0.015 Sum_probs=110.0
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD 845 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~ 845 (1134)
+...|...++..++.+|.+...|...|.+....|+++.|.+.|++++...+. ....+..++.+....++
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~g~--- 114 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--------NGDVLNNYGTFLCQQGK--- 114 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHccc---
Confidence 4566777788888888888888888888888889999999999888887652 22345555555554432
Q ss_pred CchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHH
Q 001167 846 PDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGI 925 (1134)
Q Consensus 846 ~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~ 925 (1134)
+..|+..+... +... . .......+...+...+..++++.|.
T Consensus 115 ---~~~A~~~~~~~----------------------------~~~~-------~-~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 115 ---YEQAMQQFEQA----------------------------IEDP-------L-YPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred ---HHHHHHHHHHH----------------------------Hhcc-------c-cccchHHHHHHHHHHHHcCCHHHHH
Confidence 44555444221 1000 0 0000111222344445567788888
Q ss_pred HHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHH
Q 001167 926 EVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRW 1005 (1134)
Q Consensus 926 ~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~ 1005 (1134)
..|.+++...+. ....+...+.+.+. .+....+...+.+++...|.+...+...+.+....+..+.++.
T Consensus 156 ~~~~~~~~~~~~--------~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 156 KYLTRALQIDPQ--------RPESLLELAELYYL---RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHhCcC--------ChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 888877765321 12233344444332 2456667777777777777776665555555555666666666
Q ss_pred HHHHHH
Q 001167 1006 IFDLYC 1011 (1134)
Q Consensus 1006 il~~~~ 1011 (1134)
+.+...
T Consensus 225 ~~~~~~ 230 (234)
T TIGR02521 225 YGAQLQ 230 (234)
T ss_pred HHHHHH
Confidence 665543
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.77 E-value=0.044 Score=72.57 Aligned_cols=284 Identities=11% Similarity=0.054 Sum_probs=184.6
Q ss_pred CCCChHHHHHHHhhhc-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 766 SVTPCQPLAKGLLKSD-RQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~-~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
..+.|.++.+.+.+.. .-|...|+..+....+.|+++.|.++|.......-. | + ...|...+......+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-P-----D-~vTYnsLI~a~~k~G--- 556 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-P-----D-RVVFNALISACGQSG--- 556 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-C-----C-HHHHHHHHHHHHHCC---
Confidence 4566777777777663 336899999999999999999999999988654321 1 1 134444444444443
Q ss_pred CCchHHHHHHHHHhcCC-CCCCCCc----cCC----CChhHHHHHHHHHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHH
Q 001167 845 DPDSSLRAIHVLSCLGS-GSTYTPF----KCQ----PSNVQVLRAHQGYMERIKAVRSAWLRGAVSD--QSIALICSAAL 913 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l~~-~~~~~~~----~~~----~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~--~~v~l~~~~Al 913 (1134)
.+++|..++..+.. +....|. ... ...+.+.+|...|.++.+. +..++ .+..++..|+
T Consensus 557 ---~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~- 625 (1060)
T PLN03218 557 ---AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCS- 625 (1060)
T ss_pred ---CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHH-
Confidence 26678777754421 1111111 000 0234455677777665422 21111 1223333332
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 001167 914 FEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI-YPYSPKLFNTLVE 992 (1134)
Q Consensus 914 fe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~-fP~N~~ll~~~~~ 992 (1134)
..+.++.|..+|...... ...+. +..|...+ ..+++.+.+..+.+++.+.++. ++-+...|..++.
T Consensus 626 ---k~G~~deAl~lf~eM~~~------Gv~PD-~~TynsLI---~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 626 ---QKGDWDFALSIYDDMKKK------GVKPD-EVFFSALV---DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ---hcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHH---HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356799999999977653 12233 44444443 3344456788888888888875 4556667778888
Q ss_pred HHhhCCChhHHHHHHHHHHhh--CCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCC
Q 001167 993 ISNLYTTPNKLRWIFDLYCHK--KPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASN 1070 (1134)
Q Consensus 993 lE~~~~~~~raR~il~~~~~~--~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n 1070 (1134)
.-.+.+..+.|..+|+..... .|++..|-..|..-. +.|....|..+|+...... ..-+...|...|.-.... |+
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~-k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k~-G~ 769 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC-EGNQLPKALEVLSEMKRLG-LCPNTITYSILLVASERK-DD 769 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHC-CC
Confidence 888899999999999988653 678888865554433 3489999999999988643 344567777778777764 99
Q ss_pred HHHHHHHHHHHHHhCC
Q 001167 1071 PFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1071 ~~rAR~Vf~RAL~~CP 1086 (1134)
++.|+.+|.++++...
T Consensus 770 le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999998753
No 49
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.76 E-value=0.00017 Score=79.47 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=84.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC
Q 001167 972 TTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTV 1050 (1134)
Q Consensus 972 ~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~ 1050 (1134)
++.++-..||+.+.||..|+..-..-+..+.+-.+|..++.++| .+.+|+.+..+|..-.++...+|++|.+||. -+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--MN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--cC
Confidence 45677889999999999999887666788899999999999998 7899999888888777899999999999998 77
Q ss_pred CCCHHHHHHHHHhHHHh
Q 001167 1051 RCSVVLWRWYIAYEVYI 1067 (1134)
Q Consensus 1051 ~~s~~LWr~YI~fE~~~ 1067 (1134)
+.++.||..|.+||+..
T Consensus 173 ~~~p~iw~eyfr~El~y 189 (435)
T COG5191 173 SRSPRIWIEYFRMELMY 189 (435)
T ss_pred CCCchHHHHHHHHHHHH
Confidence 89999999999999864
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.76 E-value=0.012 Score=77.35 Aligned_cols=157 Identities=6% Similarity=-0.096 Sum_probs=112.0
Q ss_pred HhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 001167 917 LTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNL 996 (1134)
Q Consensus 917 Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~ 996 (1134)
..+.++.|...|++++... |. ...|...+.++... +....+...+.+++...|+|...+..+...-..
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~l---G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQR---HNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3478899999999888753 23 34555566555433 457778888999999999998877766665566
Q ss_pred CCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHH
Q 001167 997 YTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAAR 1075 (1134)
Q Consensus 997 ~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR 1075 (1134)
.+..+.+...|++++...| ....|......-... |....|...|++|+. ..+.++.+=-.|-..+... .++.+|.
T Consensus 656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l-Gd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~-~~~~~a~ 731 (987)
T PRK09782 656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL-DDMAATQHYARLVID--DIDNQALITPLTPEQNQQR-FNFRRLH 731 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHH-HHHHHHH
Confidence 7788899999999988877 444443222222233 788899999999987 3456666666777766664 6788888
Q ss_pred HHHHHHHHhCCCcH
Q 001167 1076 RIFFRAIHACPWSK 1089 (1134)
Q Consensus 1076 ~Vf~RAL~~CPwsK 1089 (1134)
+-+.|+....|-+-
T Consensus 732 ~~~~r~~~~~~~~~ 745 (987)
T PRK09782 732 EEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHhhcCccch
Confidence 88888888887543
No 51
>PLN03077 Protein ECB2; Provisional
Probab=97.60 E-value=0.027 Score=73.85 Aligned_cols=306 Identities=10% Similarity=0.006 Sum_probs=191.2
Q ss_pred CCCChHHHHHHHhhh-cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 766 SVTPCQPLAKGLLKS-DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~-~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
..+.|+++....++. ...+...|++...+..+.|+++.|++||+.... + +. ..|...+.-...++
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~--------d~-vs~~~mi~~~~~~g--- 469 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--K--------DV-ISWTSIIAGLRLNN--- 469 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--C--------Ce-eeHHHHHHHHHHCC---
Confidence 456778888877776 566789999999999999999999999997421 1 11 12222222222222
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCccC--------CCChhHHHHHHHHHHHHHHHHHHHhhhcCCCc--hHHHHHHHHHHH
Q 001167 845 DPDSSLRAIHVLSCLGSGSTYTPFKC--------QPSNVQVLRAHQGYMERIKAVRSAWLRGAVSD--QSIALICSAALF 914 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l~~~~~~~~~~~--------~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~--~~v~l~~~~Alf 914 (1134)
....|+.++..+-.+ ..|... --..+.+..+++.+...++. |...+ ....++..|+.
T Consensus 470 ---~~~eA~~lf~~m~~~--~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-------g~~~~~~~~naLi~~y~k- 536 (857)
T PLN03077 470 ---RCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-------GIGFDGFLPNALLDLYVR- 536 (857)
T ss_pred ---CHHHHHHHHHHHHhC--CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-------CCCccceechHHHHHHHH-
Confidence 245677666444221 112100 00123334445544443322 11111 11233433332
Q ss_pred HHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 001167 915 EELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQ--IYPYSPKLFNTLVE 992 (1134)
Q Consensus 915 e~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~--~fP~N~~ll~~~~~ 992 (1134)
.+.++.|..+|+.. .+. ...|...+.-. +..+....+.+++.+-+. .-|+...|. .++.
T Consensus 537 ---~G~~~~A~~~f~~~----~~d--------~~s~n~lI~~~---~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~ll~ 597 (857)
T PLN03077 537 ---CGRMNYAWNQFNSH----EKD--------VVSWNILLTGY---VAHGKGSMAVELFNRMVESGVNPDEVTFI-SLLC 597 (857)
T ss_pred ---cCCHHHHHHHHHhc----CCC--------hhhHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCcccHH-HHHH
Confidence 46799999999864 111 12344333333 333456677777776654 467776655 4555
Q ss_pred HHhhCCChhHHHHHHHHHHhh---CCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcC
Q 001167 993 ISNLYTTPNKLRWIFDLYCHK---KPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIAS 1069 (1134)
Q Consensus 993 lE~~~~~~~raR~il~~~~~~---~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~ 1069 (1134)
--...+..+.+..+|+..... .|.+..+...+.. +.+.|....|..+|+..- ..-++.+|...+.-... .+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~-l~r~G~~~eA~~~~~~m~----~~pd~~~~~aLl~ac~~-~~ 671 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL-LGRAGKLTEAYNFINKMP----ITPDPAVWGALLNACRI-HR 671 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHhCCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHH-cC
Confidence 556778899999999998743 4566665333332 235588999999998752 33458899999997765 49
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcCcccc
Q 001167 1070 NPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLR 1123 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKeLRir 1123 (1134)
|.+.|+.+..+.++.-|.+...|..-.......=..+|..++.+.|.++|++-.
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 999999999999999998877776544333333347899999999999999853
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=97.54 E-value=0.017 Score=71.91 Aligned_cols=155 Identities=7% Similarity=-0.107 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCC
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTT 999 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~ 999 (1134)
.++.|...+++++... |.....|...+.++... +....+...+.+++...|++...+..+...-...|.
T Consensus 319 ~~~~A~~~~~~Al~ld--------P~~~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 319 AMIKAKEHAIKATELD--------HNNPQALGLLGLINTIH---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 3789999999998864 23344555555554332 457789999999999999999888777777777889
Q ss_pred hhHHHHHHHHHHhhCCCHHH---HHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 1000 PNKLRWIFDLYCHKKPSLVV---SLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 1000 ~~raR~il~~~~~~~ps~~~---wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
.+++...|++++..+|.... ++..+.+ .. |....|...|++++... .+..+..|.....+.... |+.+.|+.
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~--~~-g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~-G~~~eA~~ 462 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITY--YH-TGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLK-GKHELARK 462 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHH--hc-cCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhC-CCHHHHHH
Confidence 99999999999998885321 2222233 23 56789999999998631 255676676666666664 99999999
Q ss_pred HHHHHHHhCCCcHH
Q 001167 1077 IFFRAIHACPWSKR 1090 (1134)
Q Consensus 1077 Vf~RAL~~CPwsK~ 1090 (1134)
.|.+.+...|.+-.
T Consensus 463 ~~~~~~~~~~~~~~ 476 (553)
T PRK12370 463 LTKEISTQEITGLI 476 (553)
T ss_pred HHHHhhhccchhHH
Confidence 99999888887443
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0071 Score=70.77 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=120.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+.+-++..+++.|..-|+++++.- |.+-.-++..+-.+|+.+ .+...-..+++++..||+.+..+..
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~--------pe~~~~~iQl~~a~Yr~~---k~~~~m~~Fee~kkkFP~~~Evy~~ 467 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLD--------PENAYAYIQLCCALYRQH---KIAESMKTFEEAKKKFPNCPEVYNL 467 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCchHHHH
Confidence 34455666678899999999998863 223333444444455433 4555667889999999999999999
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCCC-------HHHHH-HHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKPS-------LVVSL-FALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYI 1061 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~ps-------~~~wl-faI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI 1061 (1134)
|+++-...+.++.+-..|+.++.-.|. +.+.+ -++-.=..+ ++.+++-.++++|+. .-|.|..-.....
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpkce~A~~tla 544 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE--LDPKCEQAYETLA 544 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc--cCchHHHHHHHHH
Confidence 999988888999999999998865442 22222 111111123 789999999999998 5577888888999
Q ss_pred HhHHHhcCCHHHHHHHHHHHHHhCC
Q 001167 1062 AYEVYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1062 ~fE~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
.|++.+ |++++|-.+|..++..--
T Consensus 545 q~~lQ~-~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 545 QFELQR-GKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 999987 999999999999988543
No 54
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.50 E-value=0.0054 Score=70.85 Aligned_cols=223 Identities=11% Similarity=0.007 Sum_probs=130.0
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC-chHHHHHH
Q 001167 776 GLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP-DSSLRAIH 854 (1134)
Q Consensus 776 ~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~-e~~~rAi~ 854 (1134)
+.|.-.+-+..+|.-|-..-...++-+.|.++..+++.++| .|.+.|++.+...+....+ ..++..++
T Consensus 293 q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-----------sL~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 293 QILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP-----------SLTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-----------chheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 33444555678899998888878888888888888877776 2556666666554321111 22334444
Q ss_pred HHHh-c---CCCCCCCCc-cCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001167 855 VLSC-L---GSGSTYTPF-KCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLH 929 (1134)
Q Consensus 855 iL~~-l---~~~~~~~~~-~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~ 929 (1134)
-|.+ . .+...-... +...++..++|-+. +....+||+...--.+.|+++|+.+|.
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~--------------------k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRIN--------------------KLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHh--------------------hhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3321 1 110000000 01112333332211 446778888777777889999999999
Q ss_pred HHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHH
Q 001167 930 QAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDL 1009 (1134)
Q Consensus 930 ~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~ 1009 (1134)
++-..- .....++++.|-+++++. .+...+-.+++-||..||+.+.+--.|+.+--..+....+|.+|+.
T Consensus 422 k~rk~~--------~~~h~vyi~~A~~E~~~~--~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 422 KLRKEG--------IVGHHVYIYCAFIEYYAT--GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHhccC--------CCCcceeeeHHHHHHHhc--CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 875531 223346777776665543 4566688899999999999998766666665555556666666665
Q ss_pred HHhhCC---CHHHHHHHHHHHHHcCCCchHHHHH
Q 001167 1010 YCHKKP---SLVVSLFALAFEMSRKGPPHRIRGL 1040 (1134)
Q Consensus 1010 ~~~~~p---s~~~wlfaI~~E~~r~g~~~raRal 1040 (1134)
++.+.. --.+|--.|..|-.. |+.+.|-++
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~~-G~lN~v~sL 524 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESMV-GSLNNVYSL 524 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHhh-cchHHHHhH
Confidence 554322 123344444555444 444444333
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=97.46 E-value=0.028 Score=69.96 Aligned_cols=246 Identities=7% Similarity=-0.077 Sum_probs=148.4
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHH
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFF---------GNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVE 837 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~---------Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemE 837 (1134)
.+.|...+++.++.+|++...|...|.+.... |+++.|...+++|+...|. ....|...+.+.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~--------~~~a~~~lg~~~ 348 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN--------NPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHH
Confidence 46788899999999999998887777655422 3478999999999998873 234555555554
Q ss_pred HhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 001167 838 LSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEEL 917 (1134)
Q Consensus 838 l~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~L 917 (1134)
...++ .+.|+..+ ++++... ++. ...+..++.....
T Consensus 349 ~~~g~------~~~A~~~~----------------------------~~Al~l~--------P~~--~~a~~~lg~~l~~ 384 (553)
T PRK12370 349 TIHSE------YIVGSLLF----------------------------KQANLLS--------PIS--ADIKYYYGWNLFM 384 (553)
T ss_pred HHccC------HHHHHHHH----------------------------HHHHHhC--------CCC--HHHHHHHHHHHHH
Confidence 44432 33444433 3322111 111 1122244555566
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhh
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIY-PYSPKLFNTLVEISNL 996 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~f-P~N~~ll~~~~~lE~~ 996 (1134)
.+.++.|+..|++++...+. ....+...+..++.. +....+...+.+++... |+++..+..+......
T Consensus 385 ~G~~~eAi~~~~~Al~l~P~--------~~~~~~~~~~~~~~~---g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 385 AGQLEEALQTINECLKLDPT--------RAAAGITKLWITYYH---TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred CCCHHHHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhc---cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 78899999999999886432 111222222223222 34667888888888876 7788766555566667
Q ss_pred CCChhHHHHHHHHHHhhCCCHHH-H--HHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHH
Q 001167 997 YTTPNKLRWIFDLYCHKKPSLVV-S--LFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 997 ~~~~~raR~il~~~~~~~ps~~~-w--lfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
.|..+.|+..+.+.....|.... + +..+++ .. | .++++.++..+..........-| +-.|+.-+ |+.+.
T Consensus 454 ~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~-g~~~~ 525 (553)
T PRK12370 454 KGKHELARKLTKEISTQEITGLIAVNLLYAEYC--QN-S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAH-GEAIA 525 (553)
T ss_pred CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh--cc-H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHH-hhhHH
Confidence 88899999999987766664322 2 233333 12 2 47777777766543333222223 34445544 77777
Q ss_pred HHHHHHHHHHh
Q 001167 1074 ARRIFFRAIHA 1084 (1134)
Q Consensus 1074 AR~Vf~RAL~~ 1084 (1134)
|+.+ .++...
T Consensus 526 ~~~~-~~~~~~ 535 (553)
T PRK12370 526 EKMW-NKFKNE 535 (553)
T ss_pred HHHH-HHhhcc
Confidence 7766 555554
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.035 Score=69.87 Aligned_cols=292 Identities=14% Similarity=0.010 Sum_probs=167.0
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHH-----------
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAE----------- 835 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yae----------- 835 (1134)
.+.|-+-+...|++.|.|+.....=|.+.+..|||-.|-++|..||-+.|..+.+... .+|.-++.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI---gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI---GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc---hhhhHHHhccchhhHHHHH
Confidence 4678888889999999999999999999999999999999999999998876554211 11211112
Q ss_pred -------------------HHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHH-HHHHHHHHHh
Q 001167 836 -------------------VELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYM-ERIKAVRSAW 895 (1134)
Q Consensus 836 -------------------mEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~-~~l~~~~s~l 895 (1134)
+.+.. ++.+.+..|+..|...=..-+.+| ....+| |..+|. .....++. +
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~---~d~~s~~~~~~ll~~ay~~n~~nP-----~~l~~L-An~fyfK~dy~~v~~-l 292 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNF---NDSDSYKKGVQLLQRAYKENNENP-----VALNHL-ANHFYFKKDYERVWH-L 292 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhhcCCCc-----HHHHHH-HHHHhhcccHHHHHH-H
Confidence 11111 111234444444432211111111 222223 233331 11111111 1
Q ss_pred hhcCCC---chH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHH
Q 001167 896 LRGAVS---DQS----IALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLST 968 (1134)
Q Consensus 896 ~~~~~~---~~~----v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~ 968 (1134)
.++.+. ... .+.+ .+.-.+-+++++.|...|..++..-... ....+=-|=|++ .+.+.+..
T Consensus 293 a~~ai~~t~~~~~~aes~Y~--~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---~~l~~~GlgQm~-------i~~~dle~ 360 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQ--LGRSYHAQGDFEKAFKYYMESLKADNDN---FVLPLVGLGQMY-------IKRGDLEE 360 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHH--HHHHHHhhccHHHHHHHHHHHHccCCCC---ccccccchhHHH-------HHhchHHH
Confidence 110000 000 1122 2344566788999999998887753221 111111122222 22356677
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhh----CCChhHHHHHHHHHHhhCC-CHHHHHHHHHH-HHHcCCCchHHHHHHH
Q 001167 969 VWETTLHGLQIYPYSPKLFNTLVEISNL----YTTPNKLRWIFDLYCHKKP-SLVVSLFALAF-EMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 969 ~R~~l~~aL~~fP~N~~ll~~~~~lE~~----~~~~~raR~il~~~~~~~p-s~~~wlfaI~~-E~~r~g~~~raRalFE 1042 (1134)
+...+++.+..+|+|+.....+.-+-.. ..-.++++.++.++++..| ....||--.++ |. +++-..-.+|.
T Consensus 361 s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~---~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 361 SKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ---TDPWASLDAYG 437 (1018)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh---cChHHHHHHHH
Confidence 7788899999999998766544444322 2246889999999888766 66788654443 33 45666688888
Q ss_pred HHhcC--CCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCC
Q 001167 1043 RALAN--DTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1043 rAl~s--~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
+|+.. .....-+.-|.--|....-..|+++.|+..|..|+..|-
T Consensus 438 ~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 438 NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 88842 112224445554443322224899999999999999864
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.39 E-value=0.01 Score=63.91 Aligned_cols=173 Identities=16% Similarity=0.059 Sum_probs=110.3
Q ss_pred cCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCC
Q 001167 763 SGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNS 842 (1134)
Q Consensus 763 ~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~ 842 (1134)
...+...|++-.+..|+.+|++..-|..-|.+....|..+.|++-|.+|+++.|. +|+
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----------------------~Gd 104 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----------------------NGD 104 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----------------------ccc
Confidence 4445666777777788888888888888888888888888888888888776661 110
Q ss_pred CCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHH
Q 001167 843 GSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWT 922 (1134)
Q Consensus 843 ~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~ 922 (1134)
+ .-.|..|.+-.+.++
T Consensus 105 ------------V----------------------------------------------------LNNYG~FLC~qg~~~ 120 (250)
T COG3063 105 ------------V----------------------------------------------------LNNYGAFLCAQGRPE 120 (250)
T ss_pred ------------h----------------------------------------------------hhhhhHHHHhCCChH
Confidence 0 013445566666777
Q ss_pred HHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhH
Q 001167 923 AGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNK 1002 (1134)
Q Consensus 923 ~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~r 1002 (1134)
.|..-|++|+..- .=-..+-+.|.+=. +..+.+....++..|.++|.+-|+++.-+...+..+..-+..-+
T Consensus 121 eA~q~F~~Al~~P--~Y~~~s~t~eN~G~-------Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 121 EAMQQFERALADP--AYGEPSDTLENLGL-------CALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHHHHHHHHhCC--CCCCcchhhhhhHH-------HHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 7778888777641 10011223333321 11223456678899999999999997766677787777777788
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHHHHc
Q 001167 1003 LRWIFDLYCHKKP-SLVVSLFALAFEMSR 1030 (1134)
Q Consensus 1003 aR~il~~~~~~~p-s~~~wlfaI~~E~~r 1030 (1134)
+|.++++.....+ +....+..|.++-..
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~ 220 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRL 220 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHh
Confidence 8888887655433 333333455555433
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.01 Score=74.49 Aligned_cols=302 Identities=14% Similarity=0.056 Sum_probs=173.9
Q ss_pred HhhhhhcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhccCCchhccCChHHHHHH
Q 001167 757 VTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFG----NIDHARRVFDMALSSIEGLPLVLKSNAPLLYLW 832 (1134)
Q Consensus 757 ~~~~~~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~G----n~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~ 832 (1134)
+.++..-....+.+...+..+++++|+|...=...+.+....+ ..+.|..+..+++...+ .-...|+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~--------~d~~a~l~ 419 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP--------VDSEAWLE 419 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc--------ccHHHHHH
Confidence 3444444556788899999999999999987777777766554 56778888888877654 12357888
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCc----cCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCc---hHH
Q 001167 833 YAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPF----KCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSD---QSI 905 (1134)
Q Consensus 833 yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~----~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~---~~v 905 (1134)
-++|.+........+.+.+|+.+|+..+...+..-- ......+++.+|+.+|.++....... ...+. ..+
T Consensus 420 laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~---~n~de~~~~~l 496 (1018)
T KOG2002|consen 420 LAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV---ANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh---cCccccccchh
Confidence 888877654322224577888888765432210000 01224567788888888876543111 11111 112
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH
Q 001167 906 ALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK 985 (1134)
Q Consensus 906 ~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ 985 (1134)
.+-...|.+.+-..+++.|-+.|...+..-+ --.-.|.++........++..+-..+..+|+..-.|+.
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-----------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHP-----------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-----------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 2334555555555788999999998877421 12223444432211224556677888999999999999
Q ss_pred HHHHHHHHHhhCCChhHHHH----HHHHHHhhCC--CHH----HHHHHHHHHHHcC----CCchHHHHHHHHHhcCCCCC
Q 001167 986 LFNTLVEISNLYTTPNKLRW----IFDLYCHKKP--SLV----VSLFALAFEMSRK----GPPHRIRGLFERALANDTVR 1051 (1134)
Q Consensus 986 ll~~~~~lE~~~~~~~raR~----il~~~~~~~p--s~~----~wlfaI~~E~~r~----g~~~raRalFErAl~s~~~~ 1051 (1134)
.|..+..|......|-.+-. ++.+...... +.+ .|+-+.+.....+ +...+|.++|.++|..++
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-- 643 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-- 643 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--
Confidence 99877778755444444444 5544433322 111 2333332221110 234566666666665321
Q ss_pred CCHHHHHH-HHHhHHHhcCCHHHHHHHHHHHHHh
Q 001167 1052 CSVVLWRW-YIAYEVYIASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus 1052 ~s~~LWr~-YI~fE~~~~~n~~rAR~Vf~RAL~~ 1084 (1134)
--+|.. =|-..+...|++..|+.||.+...+
T Consensus 644 --kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 644 --KNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred --chhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 223433 1222222247888888888876553
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.18 E-value=0.28 Score=61.69 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHhhCC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 001167 985 KLFNTLVEISNLYTTPNKLRWIFDLYCHKKP--SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIA 1062 (1134)
Q Consensus 985 ~ll~~~~~lE~~~~~~~raR~il~~~~~~~p--s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~ 1062 (1134)
.|+...+..-...+...-|-.+|...+...+ +..+|+--..+.+.. +..+.|...|+.+|...+ .+...=.-...
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l-~e~e~A~e~y~kvl~~~p--~~~D~Ri~Las 491 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL-GEYEEAIEFYEKVLILAP--DNLDARITLAS 491 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHhcCC--CchhhhhhHHH
Confidence 3444344444566777888888888776644 566887777777777 788999999999998543 33332222222
Q ss_pred hHHHhcCCHHHHHHHHHH-------HHHhCCCcHHHHHHHH--HHhhhccChHHHHHHHHHhhhcCccccc
Q 001167 1063 YEVYIASNPFAARRIFFR-------AIHACPWSKRLWLDGF--LKLNSILTAKELSDLQEVMRDKELNLRT 1124 (1134)
Q Consensus 1063 fE~~~~~n~~rAR~Vf~R-------AL~~CPwsK~L~m~a~--~~l~~~~~~~EL~~l~dvM~EKeLRir~ 1124 (1134)
.--. .|+.++|-.++.+ ....|-|.+..=|.+- ..+..+-..++.-++.-.|+++.++++.
T Consensus 492 l~~~-~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~ 561 (895)
T KOG2076|consen 492 LYQQ-LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRY 561 (895)
T ss_pred HHHh-cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2233 3899999998887 5678888887555433 2344454567777777788887777664
No 60
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.09 E-value=0.18 Score=64.48 Aligned_cols=274 Identities=9% Similarity=-0.041 Sum_probs=159.0
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
...|+++++... +.|+..|+..+....++|+.+.|.++|.......-. | +. ..|......-...+
T Consensus 275 ~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~-p-----d~-~t~~~ll~a~~~~g----- 339 (697)
T PLN03081 275 IEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS-I-----DQ-FTFSIMIRIFSRLA----- 339 (697)
T ss_pred HHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-----CH-HHHHHHHHHHHhcc-----
Confidence 344455554432 346889999999999999999999999987654221 1 11 11222111111222
Q ss_pred chHHHHHHHHHhc-CCCCCCCC--ccCCC----ChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q 001167 847 DSSLRAIHVLSCL-GSGSTYTP--FKCQP----SNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN 919 (1134)
Q Consensus 847 e~~~rAi~iL~~l-~~~~~~~~--~~~~~----s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~ 919 (1134)
.++.|..++..+ ..+...+. ++..+ ..+.+..|++.|++.... .+ .....++..|+ ..+
T Consensus 340 -~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~-~t~n~lI~~y~----~~G 405 (697)
T PLN03081 340 -LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------NL-ISWNALIAGYG----NHG 405 (697)
T ss_pred -chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------Ce-eeHHHHHHHHH----HcC
Confidence 244555554322 11111010 00000 135566777777654211 00 11233333333 346
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHhhC
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP--KLFNTLVEISNLY 997 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~--~ll~~~~~lE~~~ 997 (1134)
..+.|.++|++....- ..|. ... +..++.-+.+.+.+..+++++....+.++-.+ .-|..++..-.+.
T Consensus 406 ~~~~A~~lf~~M~~~g------~~Pd-~~T---~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 406 RGTKAVEMFERMIAEG------VAPN-HVT---FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred CHHHHHHHHHHHHHhC------CCCC-HHH---HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 7999999999876531 1222 222 23334334444567788888888776553322 2355677777788
Q ss_pred CChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHH
Q 001167 998 TTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRI 1077 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~V 1077 (1134)
|..+.|..++++. ...|+...|...+..-.. .|+.+.++.+++..+.. .+.+...+.+.+..... .|+++.|..+
T Consensus 476 G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~-~G~~~~A~~v 550 (697)
T PLN03081 476 GLLDEAYAMIRRA-PFKPTVNMWAALLTACRI-HKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNS-SGRQAEAAKV 550 (697)
T ss_pred CCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHh-CCCHHHHHHH
Confidence 9999999998864 235677788544443223 38999999999999873 34444456666666666 4999999999
Q ss_pred HHHHHHh
Q 001167 1078 FFRAIHA 1084 (1134)
Q Consensus 1078 f~RAL~~ 1084 (1134)
+....+.
T Consensus 551 ~~~m~~~ 557 (697)
T PLN03081 551 VETLKRK 557 (697)
T ss_pred HHHHHHc
Confidence 9876654
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=1 Score=52.40 Aligned_cols=291 Identities=15% Similarity=0.073 Sum_probs=165.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 001167 778 LKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLS 857 (1134)
Q Consensus 778 Lk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~ 857 (1134)
+...|+|+.|-.+.|++++..|+.+.|.-+|+.++...|-. . .---.|+-+.-..+.. +....-.+.|.
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~-------i-~~MD~Ya~LL~~eg~~---e~~~~L~~~Lf 293 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN-------V-EAMDLYAVLLGQEGGC---EQDSALMDYLF 293 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh-------h-hhHHHHHHHHHhccCH---hhHHHHHHHHH
Confidence 33489999999999999999999999999999999877621 1 1122345443333211 11223334444
Q ss_pred hcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001167 858 CLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQS-IALICSAALFEELTNGWTAGIEVLHQAFAMVL 936 (1134)
Q Consensus 858 ~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~-v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~ 936 (1134)
+..... .. .-.-...++=-++-|++++...-..+ .++.+. ..++..-++ ..-.+..++|.-.|..|...-
T Consensus 294 ~~~~~t---a~-~wfV~~~~l~~~K~~~rAL~~~eK~I---~~~~r~~~alilKG~l-L~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 294 AKVKYT---AS-HWFVHAQLLYDEKKFERALNFVEKCI---DSEPRNHEALILKGRL-LIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred hhhhcc---hh-hhhhhhhhhhhhhhHHHHHHHHHHHh---ccCcccchHHHhccHH-HHhccchHHHHHHHHHHHhcc-
Confidence 432111 00 00012222222333444332210000 011111 122222122 222255677777777665432
Q ss_pred CccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH-hhCCChhHHHHHHHHHHhhC
Q 001167 937 PERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLV-EIS-NLYTTPNKLRWIFDLYCHKK 1014 (1134)
Q Consensus 937 ~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~-~lE-~~~~~~~raR~il~~~~~~~ 1014 (1134)
|-+.. .-+-|...| --++.++.+--+...++..||+|..-+.++. ..- .....-+++..++++++..+
T Consensus 365 p~rL~---~Y~GL~hsY-------LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 365 PYRLE---IYRGLFHSY-------LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred hhhHH---HHHHHHHHH-------HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 11100 011111111 1123344444455678889999987775543 221 23445689999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001167 1015 PSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1015 ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
|--..-+.++..=..+.|-..-+.+++|+++.. .....|-+..-+|.... ..+..|-+-|+.||+..|.++. =+.
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr~dP~~~~-sl~ 509 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQ-NEPQKAMEYYYKALRQDPKSKR-TLR 509 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCccchH-HHH
Confidence 855444333322123346677888999999973 33466788888888875 7789999999999999999987 467
Q ss_pred HHHHhhhcc
Q 001167 1095 GFLKLNSIL 1103 (1134)
Q Consensus 1095 a~~~l~~~~ 1103 (1134)
|...|...+
T Consensus 510 Gl~~lEK~~ 518 (564)
T KOG1174|consen 510 GLRLLEKSD 518 (564)
T ss_pred HHHHHHhcc
Confidence 887776655
No 62
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.03 E-value=0.0079 Score=69.53 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=84.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhhCC------------ChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHH
Q 001167 972 TTLHGLQIYPYSPKLFNTLVEISNLYT------------TPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIR 1038 (1134)
Q Consensus 972 ~l~~aL~~fP~N~~ll~~~~~lE~~~~------------~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raR 1038 (1134)
-|.+.+...|+|...|..|+.+....- ..++.-.+|+++++.+| +..+|+..+..=... .+...+.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-~~~~~l~ 85 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-WDSEKLA 85 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHH
Confidence 467888899999999999988853221 13455667888888888 677777666542222 4678888
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhHHHhc--CCHHHHHHHHHHHHHhCC
Q 001167 1039 GLFERALANDTVRCSVVLWRWYIAYEVYIA--SNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1039 alFErAl~s~~~~~s~~LWr~YI~fE~~~~--~n~~rAR~Vf~RAL~~CP 1086 (1134)
..+++++. ..+++..||+.||.|..... -++...+.+|.++|+...
T Consensus 86 ~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 86 KKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 89999998 67779999999999988632 257899999999998754
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.77 Score=52.04 Aligned_cols=269 Identities=15% Similarity=0.101 Sum_probs=169.9
Q ss_pred cCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCC
Q 001167 763 SGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNS 842 (1134)
Q Consensus 763 ~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~ 842 (1134)
.+.++..|-..+-..|+.+|+...+=.+.+.+..+.|.+++|-.|-++.+.. |.++-+ .
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~------q-------------- 105 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFE------Q-------------- 105 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchH------H--------------
Confidence 4667888888888999999999999999999999999999999998887643 322111 0
Q ss_pred CCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHH
Q 001167 843 GSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWT 922 (1134)
Q Consensus 843 ~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~ 922 (1134)
...|+.-| +.+ | +.++-+.||...|...++.- . ....++-....++ .-+.+++
T Consensus 106 ------r~lAl~qL---~~D--y------m~aGl~DRAE~~f~~L~de~-------e--fa~~AlqqLl~IY-Q~treW~ 158 (389)
T COG2956 106 ------RLLALQQL---GRD--Y------MAAGLLDRAEDIFNQLVDEG-------E--FAEGALQQLLNIY-QATREWE 158 (389)
T ss_pred ------HHHHHHHH---HHH--H------HHhhhhhHHHHHHHHHhcch-------h--hhHHHHHHHHHHH-HHhhHHH
Confidence 11222222 100 0 12344566666666554311 0 0111222122222 2356788
Q ss_pred HHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhH
Q 001167 923 AGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNK 1002 (1134)
Q Consensus 923 ~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~r 1002 (1134)
+|+++-++....- +. . ..=.|-+.|..+-..+.-..+..+++..+.+|++..|++.--=..+..++...|....
T Consensus 159 KAId~A~~L~k~~-~q----~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 159 KAIDVAERLVKLG-GQ----T-YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HHHHHHHHHHHcC-Cc----c-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 8888877555432 11 1 1223444555554444434567899999999999999996433456688888899999
Q ss_pred HHHHHHHHHhhCCCHH----HHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHH
Q 001167 1003 LRWIFDLYCHKKPSLV----VSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIF 1078 (1134)
Q Consensus 1003 aR~il~~~~~~~ps~~----~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf 1078 (1134)
+-+.++++.+.+|-.. .-+...+..+ |........+-+++... +....+=.+|=-.|. + .-.+.|...+
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l---g~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~-~-~G~~~Aq~~l 305 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQL---GKPAEGLNFLRRAMETN--TGADAELMLADLIEL-Q-EGIDAAQAYL 305 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHH-h-hChHHHHHHH
Confidence 9999999999998432 2244444433 56777788888888743 333444444433333 3 3468899999
Q ss_pred HHHHHhCCCcHHHH
Q 001167 1079 FRAIHACPWSKRLW 1092 (1134)
Q Consensus 1079 ~RAL~~CPwsK~L~ 1092 (1134)
++-|+.-|.-..+|
T Consensus 306 ~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 306 TRQLRRKPTMRGFH 319 (389)
T ss_pred HHHHhhCCcHHHHH
Confidence 99999999766544
No 64
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.00 E-value=0.21 Score=62.31 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=48.4
Q ss_pred CChHHHHHHHhhhcCCCHHHHHHHHHHHHHc-------CChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhc
Q 001167 768 TPCQPLAKGLLKSDRQDVLLCGVYARREAFF-------GNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSS 840 (1134)
Q Consensus 768 k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~-------Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~ 840 (1134)
+.+-..++..|. +.+++.+|..|+.+-... +.++..|.||.+||..+...- ..-..+|..|.|+|...
T Consensus 167 ~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~----t~G~~~we~~~E~e~~~ 241 (881)
T KOG0128|consen 167 KEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHI----TEGAAIWEMYREFEVTY 241 (881)
T ss_pred hHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhh----cccHHHHHHHHHHHHHH
Confidence 333344444433 778899999999987754 457888999999998875321 12347999999998864
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.99 E-value=0.3 Score=59.46 Aligned_cols=303 Identities=11% Similarity=0.026 Sum_probs=158.4
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
.-..++|-|-.++.|+..++|+.+|.-.|.+...-|+++....+...-|+..|+ .-.-|+.||--....++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~--------~ra~w~~~Avs~~L~g~- 158 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS--------QRASWIGFAVAQHLLGE- 158 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHH-
Confidence 334677888899999999999999999999999889998888888888876662 22467776654444443
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHH-------HH-----HHHHHHHHHHHHhhhcCCCchHHHHHHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRA-------HQ-----GYMERIKAVRSAWLRGAVSDQSIALICSA 911 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkA-------r~-----~~~~~l~~~~s~l~~~~~~~~~v~l~~~~ 911 (1134)
...|+.+|...-...... +++..+-.. .. .+.++++.... ....+-+.. +...--
T Consensus 159 -----y~~A~~il~ef~~t~~~~-----~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~--~e~~i~Dkl-a~~e~k 225 (700)
T KOG1156|consen 159 -----YKMALEILEEFEKTQNTS-----PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD--NEKQIVDKL-AFEETK 225 (700)
T ss_pred -----HHHHHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh--hhhHHHHHH-HHhhhH
Confidence 556777775431110011 111111110 00 11111111100 000111111 122233
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLV 991 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~ 991 (1134)
|.|..-.+.++.|..+|...+.+.+..- .-.+.+...+-++ ...+..+..++...=+.||........=+
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rnPdn~----~Yy~~l~~~lgk~------~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERNPDNL----DYYEGLEKALGKI------KDMLEALKALYAILSEKYPRHECPRRLPL 295 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhCchhH----HHHHHHHHHHHHH------hhhHHHHHHHHHHHhhcCcccccchhccH
Confidence 4555556789999999998888754320 0122222211111 12233444556666667787754332212
Q ss_pred HHHhhCCChhHHHHHHHHHHhh-CCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC----------CCCCHHHHHHH
Q 001167 992 EISNLYTTPNKLRWIFDLYCHK-KPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDT----------VRCSVVLWRWY 1060 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~-~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~----------~~~s~~LWr~Y 1060 (1134)
.+-........+..++...+.+ .|++..=+.+.+---.+..-..+.-.-|...+.... -+-...||+.|
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 2211112233344444444333 454433222221100000011222233333333211 14568999998
Q ss_pred HHhHHH-hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001167 1061 IAYEVY-IASNPFAARRIFFRAIHACPWSKRLWLDGFLK 1098 (1134)
Q Consensus 1061 I~fE~~-~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~ 1098 (1134)
-..-.. ..|.++.|-.....||++||.-.++||.-.+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 653332 13899999999999999999999999877664
No 66
>PLN03077 Protein ECB2; Provisional
Probab=96.92 E-value=0.29 Score=64.32 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=21.4
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhccCCcc
Q 001167 430 RLEWQAGYQELATALFQAEIEFSLFCPSL 458 (1134)
Q Consensus 430 ~fl~qaG~~E~Ava~~QA~lE~n~f~P~~ 458 (1134)
.-+.++|..+.|+.+|+-+.... +.|+.
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~ 187 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAG-VRPDV 187 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC-CCCCh
Confidence 34457899999999999888775 55665
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.89 E-value=0.44 Score=54.49 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhC
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLY 997 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~ 997 (1134)
.+.++.|...|++++... |.....|...+..++.. +....+.+.+.+++...|+++... .+..+-...
T Consensus 111 ~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~---g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~ 178 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD--------PTYNYAYLNRGIALYYG---GRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESK 178 (296)
T ss_pred CCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHcc
Confidence 345555566666665532 22233444444333322 345556666666777777765211 111111223
Q ss_pred CChhHHHHHHHHHHhhCCCHHHHHHH-HHHHHHcCCCchHHHHHHHHHhcCC-----CCCCCHHHHHHHHHhHHHhcCCH
Q 001167 998 TTPNKLRWIFDLYCHKKPSLVVSLFA-LAFEMSRKGPPHRIRGLFERALAND-----TVRCSVVLWRWYIAYEVYIASNP 1071 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~ps~~~wlfa-I~~E~~r~g~~~raRalFErAl~s~-----~~~~s~~LWr~YI~fE~~~~~n~ 1071 (1134)
+..+.+...|.+.....+. ..|..+ +.+.+ |..... ..|+.++..- ..+.....|......... .|++
T Consensus 179 ~~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~l---g~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~-~g~~ 252 (296)
T PRK11189 179 LDPKQAKENLKQRYEKLDK-EQWGWNIVEFYL---GKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLS-LGDL 252 (296)
T ss_pred CCHHHHHHHHHHHHhhCCc-cccHHHHHHHHc---cCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-CCCH
Confidence 4566666666554433221 123212 22222 222222 3445444310 112333455555555555 4899
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1072 FAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1072 ~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
+.|...|.+|+...|.+..-+..++-.+
T Consensus 253 ~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 253 DEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 9999999999999987766666665443
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.23 Score=57.66 Aligned_cols=214 Identities=15% Similarity=0.126 Sum_probs=140.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHH
Q 001167 873 SNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNF 952 (1134)
Q Consensus 873 s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~ 952 (1134)
-.+.+.||-..|.++++.--+ ...++. ...|--.-.++++.|+..|-+....+.. ..|.|++.
T Consensus 502 ~ngd~dka~~~ykeal~ndas---------c~ealf-niglt~e~~~~ldeald~f~klh~il~n-------n~evl~qi 564 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDAS---------CTEALF-NIGLTAEALGNLDEALDCFLKLHAILLN-------NAEVLVQI 564 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchH---------HHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHh-------hHHHHHHH
Confidence 357788999999988743200 011111 2233333457888888888765554322 23444443
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC---HHHHHHHHHHHHH
Q 001167 953 NVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS---LVVSLFALAFEMS 1029 (1134)
Q Consensus 953 ~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps---~~~wlfaI~~E~~ 1029 (1134)
.--+. .. .++.++-+.|.++....|+.+.+++.+.++.-+-|.-..+-..+-..-+-.|| ++-|+-+-+.+-+
T Consensus 565 aniye--~l--ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 565 ANIYE--LL--EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHH--Hh--hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH
Confidence 32111 11 35667889999999999999999998888876666655555554444444553 4679877777643
Q ss_pred cCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HhhhccChHHH
Q 001167 1030 RKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFL-KLNSILTAKEL 1108 (1134)
Q Consensus 1030 r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~-~l~~~~~~~EL 1108 (1134)
-.+++...||+|-.. +-+..-|.+-|.-+.++.||+.+|-++|..--+..|-.-+ +.-|. .+...++-.+-
T Consensus 641 ---f~ekai~y~ekaali---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld--clkflvri~~dlgl~d~ 712 (840)
T KOG2003|consen 641 ---FSEKAINYFEKAALI---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD--CLKFLVRIAGDLGLKDA 712 (840)
T ss_pred ---HHHHHHHHHHHHHhc---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH--HHHHHHHHhccccchhH
Confidence 468899999999863 3457789999999998889999999999999999996543 22332 24455555555
Q ss_pred HHHHHHh
Q 001167 1109 SDLQEVM 1115 (1134)
Q Consensus 1109 ~~l~dvM 1115 (1134)
++.-+-+
T Consensus 713 key~~kl 719 (840)
T KOG2003|consen 713 KEYADKL 719 (840)
T ss_pred HHHHHHH
Confidence 4444433
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.88 E-value=0.07 Score=57.66 Aligned_cols=132 Identities=15% Similarity=-0.002 Sum_probs=101.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHH-HHHHHHHHHcCCCchHHHH
Q 001167 962 KQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVS-LFALAFEMSRKGPPHRIRG 1039 (1134)
Q Consensus 962 ~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~w-lfaI~~E~~r~g~~~raRa 1039 (1134)
.+++...++.-|++||++-|++..-|...+.+-...+..+-+++.|++++.-.|. -.+. -|.. |=..+ |....+-.
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~-FLC~q-g~~~eA~q 124 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA-FLCAQ-GRPEEAMQ 124 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH-HHHhC-CChHHHHH
Confidence 3467888999999999999999998887777777888999999999999988772 2222 2222 11234 68899999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1040 LFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1040 lFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
.|++|+..+.-.+.+.-|-.-.-+-.+ +|.+.+|+..|.|||..-|....-.++-+
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALK-AGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 999999987767767777776666666 49999999999999999997765444444
No 70
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.62 E-value=0.0022 Score=47.09 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 1033 PPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 1033 ~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
+..++|.+|++++. .++.++.+|..|+.||.
T Consensus 2 ~~~~~r~i~e~~l~--~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALE--KFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHH--HCCCChHHHHHHHHHHh
Confidence 45677777777776 56677777777777764
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.60 E-value=0.041 Score=54.39 Aligned_cols=116 Identities=13% Similarity=-0.063 Sum_probs=86.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC
Q 001167 972 TTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTV 1050 (1134)
Q Consensus 972 ~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~ 1050 (1134)
.+.+++..-|.+......++..-...+....+...|++++...| ....|.....+-... +....|..+|++++. ..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~--~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAAA--LD 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh--cC
Confidence 46778888898876554555555566788999999999888777 455554333333333 678899999999998 45
Q ss_pred CCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1051 RCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1051 ~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
+.++..|..+..+.... |+.++|...|.++++.+|.....
T Consensus 82 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDDPRPYFHAAECLLAL-GEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccchH
Confidence 66777777666666654 99999999999999999988763
No 72
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.24 E-value=6.6 Score=51.25 Aligned_cols=124 Identities=10% Similarity=-0.146 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHhCC----CCHHHH----HHHHHHHhhCCChhHHHHHHHHHHhhCCC------------HHHHHHHH
Q 001167 965 SLSTVWETTLHGLQIYP----YSPKLF----NTLVEISNLYTTPNKLRWIFDLYCHKKPS------------LVVSLFAL 1024 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP----~N~~ll----~~~~~lE~~~~~~~raR~il~~~~~~~ps------------~~~wlfaI 1024 (1134)
.+.++..++.+++..-| ....+. +-|+-+| .+.++.|+.++++.....|. -.-|.-+.
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld--~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE--SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 45678888888877542 221111 1133333 35689999999998875551 12244332
Q ss_pred HHHHH---cCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1025 AFEMS---RKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1025 ~~E~~---r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
.+... ..|+...|..+++..+. ..|.++.|+..+...+..+ |.+.+|+.++.+|+..-|-++.+..
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLAR-DLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCccHHHHH
Confidence 22221 23899999999999988 7789999999999999986 9999999999999999998876543
No 73
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.19 E-value=0.0045 Score=68.64 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=74.1
Q ss_pred HHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhC
Q 001167 1007 FDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHAC 1085 (1134)
Q Consensus 1007 l~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~C 1085 (1134)
|.+++.+.+ .+.+|..++..=..+ +....+..+|..+++ ..|.++.||.....||....+|++.||.+|.+||+..
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~-k~y~~~~nI~~~~l~--khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKK-KMYGEMKNIFAECLT--KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHh--cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 344554544 688997777665545 688999999999999 7899999999888888876689999999999999999
Q ss_pred CCcHHHHHHHHH
Q 001167 1086 PWSKRLWLDGFL 1097 (1134)
Q Consensus 1086 PwsK~L~m~a~~ 1097 (1134)
|-+..||.+.|+
T Consensus 173 ~~~p~iw~eyfr 184 (435)
T COG5191 173 SRSPRIWIEYFR 184 (435)
T ss_pred CCCchHHHHHHH
Confidence 999999999986
No 74
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.16 E-value=0.088 Score=53.52 Aligned_cols=114 Identities=13% Similarity=-0.045 Sum_probs=85.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHH-HHHHHHHcCCCchHHHHHHHHHhcCC
Q 001167 971 ETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLF-ALAFEMSRKGPPHRIRGLFERALAND 1048 (1134)
Q Consensus 971 ~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlf-aI~~E~~r~g~~~raRalFErAl~s~ 1048 (1134)
..+.++|+.-|.+. + .+...-...+..+.+...|.+++..+| +...|.. +.-+. .. |....|...|++|+.
T Consensus 14 ~~~~~al~~~p~~~--~-~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~-g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSVDPETV--Y-ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-ML-KEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHcCHHHH--H-HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HH-hhHHHHHHHHHHHHh--
Confidence 56788899999873 2 233344566788999999999998887 5566643 33232 23 789999999999998
Q ss_pred CCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1049 TVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1049 ~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
..+..+..|.......... |+.+.|...|.+||..||....-|
T Consensus 87 l~p~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred cCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHH
Confidence 5566777776665555554 999999999999999999887655
No 75
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.13 E-value=4 Score=47.67 Aligned_cols=228 Identities=14% Similarity=0.026 Sum_probs=140.4
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 001167 781 DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLG 860 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~ 860 (1134)
.-+++.....-|++-...|++..|+.-.+.++.+.|..+ .+-.-.....+..|+ ....+.+|..+.
T Consensus 149 ~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--------~vlrLa~r~y~~~g~------~~~ll~~l~~L~ 214 (400)
T COG3071 149 GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--------EVLRLALRAYIRLGA------WQALLAILPKLR 214 (400)
T ss_pred CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--------HHHHHHHHHHHHhcc------HHHHHHHHHHHH
Confidence 345577778888888888888888888888888877322 222222333333332 333344454442
Q ss_pred CCCCCCCccCCCChhHHHHH-HHHHHHHHH------------HHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 001167 861 SGSTYTPFKCQPSNVQVLRA-HQGYMERIK------------AVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEV 927 (1134)
Q Consensus 861 ~~~~~~~~~~~~s~~~ILkA-r~~~~~~l~------------~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v 927 (1134)
+...+ +.....+- ++.+.-.++ ..|..+.... .....+..+||....-.+.-+.|.++
T Consensus 215 ka~~l-------~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 215 KAGLL-------SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HccCC-------ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHH
Confidence 22111 11111111 112221111 1111111100 11245556777766667889999999
Q ss_pred HHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHH
Q 001167 928 LHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIF 1007 (1134)
Q Consensus 928 ~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il 1007 (1134)
...++..- ..-+ |...+.+ .+..+..+..+.+++.+...|.++.+++.+..+..+.+.|.+|+..|
T Consensus 286 i~~~Lk~~--------~D~~-L~~~~~~-----l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 286 IEDALKRQ--------WDPR-LCRLIPR-----LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred HHHHHHhc--------cChh-HHHHHhh-----cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 99888752 2212 3322222 23345677888999999999999999998889998999999999999
Q ss_pred HHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 1008 DLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 1008 ~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
+.++...||...|....+.=... |....+-..++.|+.
T Consensus 352 eaAl~~~~s~~~~~~la~~~~~~-g~~~~A~~~r~e~L~ 389 (400)
T COG3071 352 EAALKLRPSASDYAELADALDQL-GEPEEAEQVRREALL 389 (400)
T ss_pred HHHHhcCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHH
Confidence 99999999888875544332223 788899999999985
No 76
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=0.84 Score=55.99 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=27.9
Q ss_pred HhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 777 LLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 777 LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
+-...++---.-...++..+..++++.|++||+.+-...|
T Consensus 345 lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p 384 (638)
T KOG1126|consen 345 LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP 384 (638)
T ss_pred hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444444332333456777778999999999999988776
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.77 Score=55.38 Aligned_cols=185 Identities=12% Similarity=0.008 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHH
Q 001167 878 LRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRML 957 (1134)
Q Consensus 878 LkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll 957 (1134)
-.||+.|..+.. +++.+...|+.|+.---..+.-+.|+..|..|...++..+ ... .|..+.
T Consensus 329 seARry~SKat~----------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h------lP~---LYlgme 389 (611)
T KOG1173|consen 329 SEARRYFSKATT----------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH------LPS---LYLGME 389 (611)
T ss_pred HHHHHHHHHHhh----------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc------chH---HHHHHH
Confidence 456776665421 1223333344555444444668899999999988764321 112 234444
Q ss_pred HHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----HHHHH---HHHHHHHHc
Q 001167 958 QRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS----LVVSL---FALAFEMSR 1030 (1134)
Q Consensus 958 ~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps----~~~wl---faI~~E~~r 1030 (1134)
+. ..+++..+-..+.+|+.++|+.+..+....-+-...+.+..|-.+|..++...++ ...|. .-+.+=..+
T Consensus 390 y~--~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YM--RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HH--HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 32 3357777889999999999999987764333334456788899999988744332 22341 122222222
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCHHHHH--HHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1031 KGPPHRIRGLFERALANDTVRCSVVLWR--WYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1031 ~g~~~raRalFErAl~s~~~~~s~~LWr--~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
-+-..-|..-|++||. .++.++.... .||.. ..||+++|-+-|-+||..-|.+
T Consensus 468 l~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~---llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALL--LSPKDASTHASIGYIYH---LLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHH---HhcChHHHHHHHHHHHhcCCcc
Confidence 2456777788888887 4444443332 23332 2499999999999999999977
No 78
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=4.2 Score=48.28 Aligned_cols=268 Identities=14% Similarity=0.050 Sum_probs=146.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCcc
Q 001167 790 VYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFK 869 (1134)
Q Consensus 790 aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~ 869 (1134)
-|+.++...|+...|++.|-.++...| |.|=||+|+..-- .-+.++..+.++.+.+ .
T Consensus 169 L~Gvv~k~~~~~s~A~~sfv~~v~~~P-------------~~W~AWleL~~li--------t~~e~~~~l~~~l~~~-~- 225 (559)
T KOG1155|consen 169 LYGVVLKELGLLSLAIDSFVEVVNRYP-------------WFWSAWLELSELI--------TDIEILSILVVGLPSD-M- 225 (559)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHhcCC-------------cchHHHHHHHHhh--------chHHHHHHHHhcCccc-c-
Confidence 468899999999999999999886555 3444555555311 1233332221111100 0
Q ss_pred CCCChhHHHHHHHHH---HHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccC-Ccc
Q 001167 870 CQPSNVQVLRAHQGY---MERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSC-SHQ 945 (1134)
Q Consensus 870 ~~~s~~~ILkAr~~~---~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~-~~~ 945 (1134)
.-+.--=+.+|=+-+ ++.+.....-...|..+.. .+..-.|...|-..+++.|.++|+...... |=++.. ..-
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~--~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdly 302 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSM--YIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLY 302 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccH--HHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHH
Confidence 000000011111111 1111111111223444432 233334566677778999999999887752 221110 000
Q ss_pred HHHHHHHH--HHHHHHhhc--------------cCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHH-hhCCChh
Q 001167 946 LEFLFNFN--VRMLQRHHK--------------QLSL-------STVWETTLHGLQIYPYSPKLFNTLVEIS-NLYTTPN 1001 (1134)
Q Consensus 946 ~E~L~~~~--a~ll~~~~~--------------~~~l-------~~~R~~l~~aL~~fP~N~~ll~~~~~lE-~~~~~~~ 1001 (1134)
+-.|++.. .++-+.... ..+. .++-.-+.+||++.|+-...|.+ +--| ....+..
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTL-mGHEyvEmKNt~ 381 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTL-MGHEYVEMKNTH 381 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHH-hhHHHHHhcccH
Confidence 11222211 122111110 0111 35666778888999998888853 3333 3456777
Q ss_pred HHHHHHHHHHhhCC-CHHHHH-HHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHH
Q 001167 1002 KLRWIFDLYCHKKP-SLVVSL-FALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFF 1079 (1134)
Q Consensus 1002 raR~il~~~~~~~p-s~~~wl-faI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~ 1079 (1134)
.|-.-|++++..|| .-..|. ..-..|+. +=.-=+---|.+|+. --|+.+.+|...-++-... ++.+.|...|.
T Consensus 382 AAi~sYRrAvdi~p~DyRAWYGLGQaYeim--~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl-~~~~eAiKCyk 456 (559)
T KOG1155|consen 382 AAIESYRRAVDINPRDYRAWYGLGQAYEIM--KMHFYALYYFQKALE--LKPNDSRLWVALGECYEKL-NRLEEAIKCYK 456 (559)
T ss_pred HHHHHHHHHHhcCchhHHHHhhhhHHHHHh--cchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 88888888888888 456673 22223332 223445567788887 3477899999988877765 89999999999
Q ss_pred HHHHhCCCcH
Q 001167 1080 RAIHACPWSK 1089 (1134)
Q Consensus 1080 RAL~~CPwsK 1089 (1134)
||+..---.+
T Consensus 457 rai~~~dte~ 466 (559)
T KOG1155|consen 457 RAILLGDTEG 466 (559)
T ss_pred HHHhccccch
Confidence 9998655433
No 79
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.08 E-value=7.7 Score=50.61 Aligned_cols=299 Identities=10% Similarity=-0.018 Sum_probs=172.2
Q ss_pred ChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC-----
Q 001167 769 PCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG----- 843 (1134)
Q Consensus 769 ~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~----- 843 (1134)
.|-+..+.+++.+|++..++..|.....++|....|.+.... .|.+ ....+..|+.+...-....+.
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~----~p~~----f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE----NPNL----VSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh----Cccc----cCHHHHHHHHHHHHHHHHhhcccccc
Confidence 388899999999999999999999999999999888765433 3322 122344554432221111110
Q ss_pred CCC---chHHHHHHHHHhc----CCCCCCCCc--cCCCChhHHHHHHHHHHHHHHHHHHHhhhc-CCCchHHHHHHHHHH
Q 001167 844 SDP---DSSLRAIHVLSCL----GSGSTYTPF--KCQPSNVQVLRAHQGYMERIKAVRSAWLRG-AVSDQSIALICSAAL 913 (1134)
Q Consensus 844 ~~~---e~~~rAi~iL~~l----~~~~~~~~~--~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~-~~~~~~v~l~~~~Al 913 (1134)
... ...++|+..+..+ +..+...+. ...+...-.|.+|.-+.+.++....--..+ .++ .++.-+..=|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P-~y~~~a~aday 337 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP-DYARRWAASAY 337 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHH
Confidence 111 1345666555443 211111100 001122233445555555554432211222 223 22222212111
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhcCccccCCccH---HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCC---------
Q 001167 914 FEELTNGWTAGIEVLHQAFAMVLPERRSCSHQL---EFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYP--------- 981 (1134)
Q Consensus 914 fe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~---E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP--------- 981 (1134)
+ -+...++|..+|..++..-++. ....... +.|+ ||-+. +.....++.++.+....-|
T Consensus 338 l--~~~~P~kA~~l~~~~~~~~~~~-~~~~~~~~~~~~L~--yA~ld-----~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 338 I--DRRLPEKAAPILSSLYYSDGKT-FRNSDDLLDADDLY--YSLNE-----SEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred H--hcCCcHHHHHHHHHHhhccccc-cCCCcchHHHHHHH--HHHHh-----cccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 1 2367899999999887753211 0011122 2333 23222 2345677787777776555
Q ss_pred ---CCHHHHHHH----HHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCC
Q 001167 982 ---YSPKLFNTL----VEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCS 1053 (1134)
Q Consensus 982 ---~N~~ll~~~----~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s 1053 (1134)
-|+. |..+ +..-.-.+....+-.+++......| ...+++-....+..| |.+.+|+.++..|+.. .|.+
T Consensus 408 ~~~pn~d-~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 408 GKEPNDD-WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR-DLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred CCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhh--CCcc
Confidence 2333 2222 2223346778889999999888877 677888778888888 8999999999888763 4444
Q ss_pred HHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1054 VVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1054 ~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
..+=...+.--... +++..|+.+....+...|-++.+
T Consensus 484 ~~~~~~~~~~al~l-~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 484 LILERAQAETAMAL-QEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhCCCchhH
Confidence 44433444333443 89999999999999999998853
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.96 E-value=0.25 Score=53.18 Aligned_cols=118 Identities=8% Similarity=0.017 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCC--chHHHHHHHH
Q 001167 967 STVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGP--PHRIRGLFER 1043 (1134)
Q Consensus 967 ~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~--~~raRalFEr 1043 (1134)
..+-..+.++|...|+|...|..+..+....+..+.+...|++++...| ....+......=..+.|. ...++.+|++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4556677889999999999999888888888999999999999998887 555564322211112233 5899999999
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
|+. ..+..+..|.......... |+++.|...|.++++.-|-
T Consensus 136 al~--~dP~~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 136 ALA--LDANEVTALMLLASDAFMQ-ADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHH--hCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Confidence 998 4555666666555555554 9999999999999998884
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.27 Score=55.44 Aligned_cols=188 Identities=14% Similarity=0.035 Sum_probs=125.7
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
.+|..|-++.+.-|.+.|-++.+-..-|++...-++.+.|-+.|..+++..+..
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-------------------------- 323 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN-------------------------- 323 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--------------------------
Confidence 468889999999999999999999999999999999999999999998866521
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCch-H--HHHHHHHHHHHHHhcCH
Q 001167 845 DPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQ-S--IALICSAALFEELTNGW 921 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~-~--v~l~~~~Alfe~Lt~~~ 921 (1134)
|.-+.|++.+.-|.-. | .-|-++|.+.++- |..+.. + +.+.|.|| ..+
T Consensus 324 --------vEaiAcia~~yfY~~~-----P---E~AlryYRRiLqm-------G~~speLf~NigLCC~ya------qQ~ 374 (478)
T KOG1129|consen 324 --------VEAIACIAVGYFYDNN-----P---EMALRYYRRILQM-------GAQSPELFCNIGLCCLYA------QQI 374 (478)
T ss_pred --------ceeeeeeeeccccCCC-----h---HHHHHHHHHHHHh-------cCCChHHHhhHHHHHHhh------cch
Confidence 1122355544433211 1 1133445444321 211111 1 12222222 457
Q ss_pred HHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChh
Q 001167 922 TAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPN 1001 (1134)
Q Consensus 922 ~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~ 1001 (1134)
+-++..|++|++..... -...-+|.....+. ...+++.-+...+.-+|...|++..-+.-+.-++.+.|.++
T Consensus 375 D~~L~sf~RAlstat~~-----~~aaDvWYNlg~va---V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQP-----GQAADVWYNLGFVA---VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred hhhHHHHHHHHhhccCc-----chhhhhhhccceeE---EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 88888999998864311 13344554333222 23355666778888899999999887777777888999999
Q ss_pred HHHHHHHHHHhhCC
Q 001167 1002 KLRWIFDLYCHKKP 1015 (1134)
Q Consensus 1002 raR~il~~~~~~~p 1015 (1134)
.+|.+|..+....|
T Consensus 447 ~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 447 GARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHHHHhhhhCc
Confidence 99999998887766
No 82
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.28 Score=59.92 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=42.4
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001167 772 PLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEG 817 (1134)
Q Consensus 772 k~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~ 817 (1134)
-+|+.|++.+|++-.-|.+.+.+...+++++.|-|-|++|++.-|.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 5889999999999999999999999999999999999999987773
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.84 E-value=4.9 Score=46.45 Aligned_cols=258 Identities=11% Similarity=-0.055 Sum_probs=142.0
Q ss_pred CCChHHHHHHHhhhcCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 767 VTPCQPLAKGLLKSDRQD---VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~n---l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
...+.+.++...+.++.+ .....-.|...+..|+++.|.++++.++...|. +. ..+.. +......+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-------~~-~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 22 RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-------DL-LALKL-HLGAFGLGDF 92 (355)
T ss_pred cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------cH-HHHHH-hHHHHHhccc
Confidence 444455555656554433 445556688888999999999999999998772 11 22221 1111111110
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
. +....+...+.... .. ..........++......+.++.
T Consensus 93 ~--~~~~~~~~~l~~~~------------------------------------~~--~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 93 S--GMRDHVARVLPLWA------------------------------------PE--NPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred c--cCchhHHHHHhccC------------------------------------cC--CCCcHHHHHHHHHHHHHcCCHHH
Confidence 0 01112222221100 00 00111222344555566788999
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHhhCCC
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKL----FNTLVEISNLYTT 999 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~l----l~~~~~lE~~~~~ 999 (1134)
|...+++++...+. ....+...+.+++.. +.+..+...+.+++...|.++.+ |..++.+....|.
T Consensus 133 A~~~~~~al~~~p~--------~~~~~~~la~i~~~~---g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 133 AEEAARRALELNPD--------DAWAVHAVAHVLEMQ---GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHHHHHhhCCC--------CcHHHHHHHHHHHHc---CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 99999999886432 234555556666543 45778889999999998865432 2234555667889
Q ss_pred hhHHHHHHHHHHhhCC--CHHHHH-H--HHHHHHHcCC---CchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCH
Q 001167 1000 PNKLRWIFDLYCHKKP--SLVVSL-F--ALAFEMSRKG---PPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNP 1071 (1134)
Q Consensus 1000 ~~raR~il~~~~~~~p--s~~~wl-f--aI~~E~~r~g---~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~ 1071 (1134)
.+.+..+|++++...+ .....+ - .+.......| ...+...+................+..++...+.. |+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA-GDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC-CCH
Confidence 9999999999865444 212221 0 1111111112 23444334554433211122233444555555654 889
Q ss_pred HHHHHHHHHHHHhC
Q 001167 1072 FAARRIFFRAIHAC 1085 (1134)
Q Consensus 1072 ~rAR~Vf~RAL~~C 1085 (1134)
+.|..++.+....+
T Consensus 281 ~~a~~~L~~l~~~~ 294 (355)
T cd05804 281 DALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887754
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.84 E-value=2 Score=53.63 Aligned_cols=296 Identities=17% Similarity=0.080 Sum_probs=164.8
Q ss_pred HhhhhhcCCCCCChHHHHHHHhhh-cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHH
Q 001167 757 VTKMNLSGCSVTPCQPLAKGLLKS-DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAE 835 (1134)
Q Consensus 757 ~~~~~~~~~~~k~aRk~aK~LLk~-~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yae 835 (1134)
++.......+.++|..+++.+|+. +-.+..-|.=.|.+-...+.+..|..|.+.|+...+. ...+-..-++
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--------N~~l~~~~~~ 555 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--------NHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--------hhhhchhhhh
Confidence 333333445678899999999999 7788999999999999999999999999999987651 1122222344
Q ss_pred HHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCc---hHHHHHHHHH
Q 001167 836 VELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSD---QSIALICSAA 912 (1134)
Q Consensus 836 mEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~---~~v~l~~~~A 912 (1134)
+|...+. ..+.++..+|.|.-....... +....++. ....+...+ +......+ .+..+. +
T Consensus 556 i~~~~~~--~e~~l~t~~~~L~~we~~~~~-----q~~~~~g~------~~~lk~~l~-la~~q~~~a~s~sr~ls---~ 618 (799)
T KOG4162|consen 556 IELTFND--REEALDTCIHKLALWEAEYGV-----QQTLDEGK------LLRLKAGLH-LALSQPTDAISTSRYLS---S 618 (799)
T ss_pred hhhhccc--HHHHHHHHHHHHHHHHhhhhH-----hhhhhhhh------hhhhhcccc-cCcccccccchhhHHHH---H
Confidence 4444321 112344445555211100000 00000000 000000000 00000000 001110 1
Q ss_pred HHHHH--hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001167 913 LFEEL--TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTL 990 (1134)
Q Consensus 913 lfe~L--t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~ 990 (1134)
+.+.- .-+.+..+..+. ..+...+.....+.+|...+-+-... .....++..+.++-..||...-.|..-
T Consensus 619 l~a~~~~~~~se~~Lp~s~-----~~~~~~~~~~~~~~lwllaa~~~~~~---~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSST-----VLPGPDSLWYLLQKLWLLAADLFLLS---GNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCccc-----ccCCCCchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 11100 001111100000 00000011123577787766544332 345678889999999999998766554
Q ss_pred HHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHH---HHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHh
Q 001167 991 VEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFAL---AFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYI 1067 (1134)
Q Consensus 991 ~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI---~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~ 1067 (1134)
...-...+.+..+-..|..+..-+|..+.-+.|+ ..|... ......|.++-.|+. ..+.|...|...-..-..+
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHc
Confidence 4444456788889889998888888554444443 333322 233455668888998 6678999998776655554
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH
Q 001167 1068 ASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1068 ~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
|+.++|-+.|.-|++-=+.++
T Consensus 768 -Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 768 -GDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred -cchHHHHHHHHHHHhhccCCC
Confidence 999999999999999644433
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.80 E-value=0.45 Score=60.52 Aligned_cols=136 Identities=15% Similarity=0.031 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH-HH-HHHHH
Q 001167 947 EFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL-VV-SLFAL 1024 (1134)
Q Consensus 947 E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~-~~-wlfaI 1024 (1134)
...+...++++... +.+.-+...+..+++.+|.+...+..|+..-.+.+-.+.++..++++....|.. .. .+.++
T Consensus 86 ~~~~~~La~i~~~~---g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAA---HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHc---CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 44555555655443 346678889999999999999988888888888888999999999999998843 32 34454
Q ss_pred HHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh-CCCcHH
Q 001167 1025 AFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA-CPWSKR 1090 (1134)
Q Consensus 1025 ~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~-CPwsK~ 1090 (1134)
.+ ...|....|..+|++++. .++..+..|..|-...... |..+.|...|.+|+.. -|.+|.
T Consensus 163 ~l--~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 163 SW--DEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HH--HHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCcchHH
Confidence 44 444889999999999997 5667788888888877775 9999999999999986 466665
No 86
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=95.71 E-value=0.15 Score=50.76 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHh-h---CCChhHHHHHHHHHHhhCC----------CHHHHHHHHHHHHHc
Q 001167 968 TVWETTLHGLQIYP---YSPKLFNTLVEISN-L---YTTPNKLRWIFDLYCHKKP----------SLVVSLFALAFEMSR 1030 (1134)
Q Consensus 968 ~~R~~l~~aL~~fP---~N~~ll~~~~~lE~-~---~~~~~raR~il~~~~~~~p----------s~~~wlfaI~~E~~r 1030 (1134)
..|..++..|..+. ..-..|..|+.|-. . .+....++.++++++.... -+.+|+.++.+
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~---- 78 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL---- 78 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----
Confidence 45777888888887 45678889999842 2 2456778889998886532 24677766533
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHH
Q 001167 1031 KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAI 1082 (1134)
Q Consensus 1031 ~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL 1082 (1134)
....+.+|.-......+..++.+|..|..+.... |++++|..||.+||
T Consensus 79 ---~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~-~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 ---SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKR-GNFKKADEIYQLGI 126 (126)
T ss_dssp ---BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhhC
Confidence 2388899998888778899999999999998885 99999999999987
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.50 E-value=1.5 Score=47.84 Aligned_cols=91 Identities=9% Similarity=-0.066 Sum_probs=49.5
Q ss_pred HhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHH
Q 001167 917 LTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKL---FNTLVEI 993 (1134)
Q Consensus 917 Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~l---l~~~~~l 993 (1134)
..+.++.|...|++++...+.. +.....+...+..+.. .+....+...+.++++.+|+++.. +......
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~la~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~ 116 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFS-----PYAEQAQLDLAYAYYK---SGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS 116 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCc-----hhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence 3466777888887776654321 2223334334433322 245677778888888888877642 1111111
Q ss_pred Hhh--------CCChhHHHHHHHHHHhhCC
Q 001167 994 SNL--------YTTPNKLRWIFDLYCHKKP 1015 (1134)
Q Consensus 994 E~~--------~~~~~raR~il~~~~~~~p 1015 (1134)
... .+..+.+...|.+++...|
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 117 NYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 111 1345566777777776666
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.29 E-value=0.036 Score=48.06 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=46.5
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
+...|.++.+.++..+|+|..++..+|.+....|+++.|+.++++++...|
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 356788999999999999999999999999999999999999999998777
No 89
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.19 E-value=0.037 Score=40.39 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1069 SNPFAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
|+.++||.+|.||+..||.+..+|+..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4678999999999999999999999988754
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.18 E-value=1.6 Score=50.64 Aligned_cols=101 Identities=11% Similarity=-0.119 Sum_probs=42.1
Q ss_pred HhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH-HHHH-H-HHHHHHHcCCCchHHHHHHHHHhcCCCCC--C
Q 001167 978 QIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL-VVSL-F-ALAFEMSRKGPPHRIRGLFERALANDTVR--C 1052 (1134)
Q Consensus 978 ~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~-~~wl-f-aI~~E~~r~g~~~raRalFErAl~s~~~~--~ 1052 (1134)
...|.....+..+.......+..+++...+++++...|.. ..+. . .+..+ . |....+...|++++...... .
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~--~-g~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM--Q-GRFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH--c-CCHHHHHHHHHhhhhccCCCcch
Confidence 3344443333323333334445555555555555554421 1111 1 12221 2 44555555555555422110 0
Q ss_pred CHHHHHHHHHhHHHhcCCHHHHHHHHHHHH
Q 001167 1053 SVVLWRWYIAYEVYIASNPFAARRIFFRAI 1082 (1134)
Q Consensus 1053 s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL 1082 (1134)
....|.....+.... |+++.|..+|.+++
T Consensus 185 ~~~~~~~la~~~~~~-G~~~~A~~~~~~~~ 213 (355)
T cd05804 185 RGHNWWHLALFYLER-GDYEAALAIYDTHI 213 (355)
T ss_pred hHHHHHHHHHHHHHC-CCHHHHHHHHHHHh
Confidence 112333444444443 55555555555554
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.09 E-value=0.91 Score=54.92 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=120.0
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
..+|--.+...++++|++..-|.-.+..-..+++=..|-.-+.+|+..-|.--. -..-|-+.|+.--+
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVSytNeg~-------- 368 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVSYTNEGL-------- 368 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHHHhhhhh--------
Confidence 344444566778999999999999999999999999999999999998873100 00113333432211
Q ss_pred chHHHHHHHHH-hcCCCCCCC--Cc----------cCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 001167 847 DSSLRAIHVLS-CLGSGSTYT--PF----------KCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAAL 913 (1134)
Q Consensus 847 e~~~rAi~iL~-~l~~~~~~~--~~----------~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Al 913 (1134)
-..|++.|. ++...++|. .. ++.++...+.+..+.|-++.... .......+-++..+
T Consensus 369 --q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~--------~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 369 --QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL--------PTKIDPDVQSGLGV 438 (579)
T ss_pred --HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC--------CCCCChhHHhhhHH
Confidence 126888775 333332221 00 12345566677777776654332 10011344567889
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH
Q 001167 914 FEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP 984 (1134)
Q Consensus 914 fe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~ 984 (1134)
+-||.+.|++|...|+.|+.. .|.-+.||..+.--| ++.....-+-+.|.+||++.|.-.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtL---AN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATL---ANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHh---cCCcccHHHHHHHHHHHhcCCCee
Confidence 999999999999999999874 356788998775444 221223457788899999998753
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.07 E-value=1.1 Score=56.63 Aligned_cols=159 Identities=13% Similarity=0.076 Sum_probs=110.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLV 991 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~ 991 (1134)
|.+.+..++++.|..++..++...+ .+-.-|...+.+... ++++.++-..-.-|=.+.|+++.+|..+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp--------~~~~ay~tL~~IyEq---rGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDP--------RNPIAYYTLGEIYEQ---RGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCc--------cchhhHHHHHHHHHH---cccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4556666999999999999988532 222334333333322 24565555555556678999999999999
Q ss_pred HHHhhCCChhHHHHHHHHHHhhCCCH--HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCC-----HHHHHHHHHhH
Q 001167 992 EISNLYTTPNKLRWIFDLYCHKKPSL--VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCS-----VVLWRWYIAYE 1064 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~~ps~--~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s-----~~LWr~YI~fE 1064 (1134)
.+...++++++||-.|.+++..+|+. ..|-.+.-+ .+.|...+|-.-|.+.++ .++.. ..+-+.+++..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~--~~~G~~~~Am~~f~~l~~--~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLY--QKTGDLKRAMETFLQLLQ--LDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH--HHhChHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHH
Confidence 99889999999999999999999965 233222222 233888999999999998 34422 23334467777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCC
Q 001167 1065 VYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1065 ~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
+.. +..++|-+.|+-++..|-
T Consensus 291 ~~~-~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 291 ITH-NERERAAKALEGALSKEK 311 (895)
T ss_pred HHh-hHHHHHHHHHHHHHhhcc
Confidence 764 666899999999998543
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.02 E-value=1.7 Score=49.59 Aligned_cols=114 Identities=11% Similarity=-0.034 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....++..+.++++..|+++..|..+...-...+..+.+...|++++...|. ...|.......... |....|...|+
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~~~ 156 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRYELAQDDLL 156 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 34556777777888888888777765555556677777888888887777663 34443322222223 67777888888
Q ss_pred HHhcCCCCCCCH--HHHHHHHHhHHHhcCCHHHHHHHHHHHHHh
Q 001167 1043 RALANDTVRCSV--VLWRWYIAYEVYIASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus 1043 rAl~s~~~~~s~--~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~ 1084 (1134)
+++. ..|.++ .+|.... .. .++.+.|...|.+++..
T Consensus 157 ~al~--~~P~~~~~~~~~~l~---~~-~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 157 AFYQ--DDPNDPYRALWLYLA---ES-KLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHH--hCCCCHHHHHHHHHH---Hc-cCCHHHHHHHHHHHHhh
Confidence 8876 334443 3443211 11 25677777777766654
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.95 E-value=0.041 Score=47.43 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=47.9
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.+...|.+.++.+|+.+|.+...|..+|.+....|+++.|..+|+.++...|
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3467899999999999999999999999999999999999999999999887
No 95
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.91 E-value=0.34 Score=42.29 Aligned_cols=85 Identities=11% Similarity=-0.078 Sum_probs=51.2
Q ss_pred CChhHHHHHHHHHHhhCCCH-HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 998 TTPNKLRWIFDLYCHKKPSL-VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~ps~-~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
+..+.+..++.+++...|.. ..|......-... ++...+...|++++. ..+.....|.......... |+.+.|..
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~a~~ 89 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL-GKYEEALE 89 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH-HhHHHHHH
Confidence 44455555555555444422 2222222222222 566778888888887 3455556676666666664 78888888
Q ss_pred HHHHHHHhCC
Q 001167 1077 IFFRAIHACP 1086 (1134)
Q Consensus 1077 Vf~RAL~~CP 1086 (1134)
.|.+++..||
T Consensus 90 ~~~~~~~~~~ 99 (100)
T cd00189 90 AYEKALELDP 99 (100)
T ss_pred HHHHHHccCC
Confidence 8988888887
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.77 E-value=2.7 Score=45.79 Aligned_cols=123 Identities=11% Similarity=-0.050 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HH---HH-H-HHHHHHHH-----
Q 001167 964 LSLSTVWETTLHGLQIYPYSPK---LFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LV---VS-L-FALAFEMS----- 1029 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~---ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~---~w-l-faI~~E~~----- 1029 (1134)
+....+...+.+++..+|.++. .+...+......+.++.+...|++++...|. .. .| . ..+..+..
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~ 126 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDR 126 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccC
Confidence 4577888999999999999863 2333444455678999999999999988772 11 22 2 22233220
Q ss_pred cCCCchHHHHHHHHHhcCCCCCCCHHHHHHHH-----------------HhHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 001167 1030 RKGPPHRIRGLFERALANDTVRCSVVLWRWYI-----------------AYEVYIASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1030 r~g~~~raRalFErAl~s~~~~~s~~LWr~YI-----------------~fE~~~~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
..+....+...|++++. ..+.+...|..+. .+... .|++..|...|.+++..||.++
T Consensus 127 ~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 127 DQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred CHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCc
Confidence 11456789999999998 4566665554432 12233 3899999999999999999753
No 97
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=2.6 Score=50.98 Aligned_cols=169 Identities=11% Similarity=0.042 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHH
Q 001167 907 LICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKL 986 (1134)
Q Consensus 907 l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~l 986 (1134)
++.|-|--.|-...+.....+.+..+...+.+ .+ ++..++.-++..+ +-..+-.+-.+-+..||+++.-
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh-------~~-~~~~~ia~l~el~---~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFH-------LP-CLPLHIACLYELG---KSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC-------cc-hHHHHHHHHHHhc---ccchHHHHHHHHHHhCCCCCcc
Confidence 33344444555566788888888887765433 11 2222222222222 1222333334567899999988
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHhhCCCH-HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 987 FNTLVEISNLYTTPNKLRWIFDLYCHKKPSL-VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 987 l~~~~~lE~~~~~~~raR~il~~~~~~~ps~-~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
|....-.-.-.+...+||++|.+++.-+|+- ..|+..... ..-.+....+.+.|-+|-+.-.+.|=| .+||-.|-
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghs-fa~e~EhdQAmaaY~tAarl~~G~hlP---~LYlgmey 390 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHS-FAGEGEHDQAMAAYFTAARLMPGCHLP---SLYLGMEY 390 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHH-hhhcchHHHHHHHHHHHHHhccCCcch---HHHHHHHH
Confidence 8644433344577899999999999888854 668633221 122256789999999998865555544 45777777
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1066 YIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1066 ~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
.+.+|++.|..-|..|+..||..+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~Dpl 415 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPSDPL 415 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCCcch
Confidence 6568999999999999999998864
No 98
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.70 E-value=5.9 Score=46.59 Aligned_cols=136 Identities=12% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH--HHHHH
Q 001167 913 LFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK--LFNTL 990 (1134)
Q Consensus 913 lfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~--ll~~~ 990 (1134)
++|.| .+...|++.|.++.+..+.. ..+.-..+.|.-+. ++-.++-+..-.....||.|-. =|+.
T Consensus 567 iye~l-ed~aqaie~~~q~~slip~d--------p~ilskl~dlydqe---gdksqafq~~ydsyryfp~nie~iewl~- 633 (840)
T KOG2003|consen 567 IYELL-EDPAQAIELLMQANSLIPND--------PAILSKLADLYDQE---GDKSQAFQCHYDSYRYFPCNIETIEWLA- 633 (840)
T ss_pred HHHHh-hCHHHHHHHHHHhcccCCCC--------HHHHHHHHHHhhcc---cchhhhhhhhhhcccccCcchHHHHHHH-
Confidence 44444 67788999999888765432 23333334333222 3334555666677889999954 3332
Q ss_pred HHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhH
Q 001167 991 VEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYE 1064 (1134)
Q Consensus 991 ~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE 1064 (1134)
........++++-.+|+++....|++.-|-..|..=+.|.|+..+|-.+|..--. +.|....--+..++..
T Consensus 634 -ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~ 704 (840)
T KOG2003|consen 634 -AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIA 704 (840)
T ss_pred -HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHh
Confidence 2222345789999999999999999999955554445677999999888876544 4555555444444433
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.68 E-value=0.52 Score=50.68 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcccccccchhHHHHHHH
Q 001167 305 LEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVVQGEFSRFKVSELRKMYA 384 (1134)
Q Consensus 305 ~E~KlsilekAL~~~p~~~~Lll~~l~~~~~~w~~~~l~~~W~~~l~~~p~~~~LW~~yL~~~q~~~~~F~~~~~~~~y~ 384 (1134)
.+.-+.-|+++|+.+|+|.+....+=..+...-+.++...-.++.+..+|++..+|..|-.........+...+...+|.
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 36678889999999999999777776677778888999999999999999999999988763221122333456666666
Q ss_pred HHHHHHHHHHHHHhHhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhccCCcc
Q 001167 385 HAIQALSAACIKQFRQVNQTVKPASLDPAIIQLELGLVDIFLSLCRLEWQAGYQELATALFQAEIEFSLFCPSL 458 (1134)
Q Consensus 385 ~~l~~l~~~~~~~~~q~~~~~~~~~~~~~~~~~e~~~l~if~r~~~fl~qaG~~E~Ava~~QA~lE~n~f~P~~ 458 (1134)
++++ .+. . + +..+..++.-..+.|-.+.|++.||.+++++ |+.
T Consensus 135 ~al~-----------~dP-----~--~----------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~---~~~ 177 (198)
T PRK10370 135 KALA-----------LDA-----N--E----------VTALMLLASDAFMQADYAQAIELWQKVLDLN---SPR 177 (198)
T ss_pred HHHH-----------hCC-----C--C----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC
Confidence 5442 111 0 1 2344555666668999999999999999998 554
No 100
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=1.8 Score=47.75 Aligned_cols=142 Identities=16% Similarity=0.115 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH
Q 001167 906 ALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK 985 (1134)
Q Consensus 906 ~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ 985 (1134)
......|.+..-+++++.|.++|++.++.- |+.-.++...+-++.-.++ ++. +-+-+..-|..||++..
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--------pt~~v~~KRKlAilka~GK--~l~-aIk~ln~YL~~F~~D~E 155 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDD--------PTDTVIRKRKLAILKAQGK--NLE-AIKELNEYLDKFMNDQE 155 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccC--------cchhHHHHHHHHHHHHcCC--cHH-HHHHHHHHHHHhcCcHH
Confidence 345577889999999999999999887743 4444555555555544332 343 34456778999999999
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHH--HcC--CCchHHHHHHHHHhcCCCCC-CCHHHHHHH
Q 001167 986 LFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEM--SRK--GPPHRIRGLFERALANDTVR-CSVVLWRWY 1060 (1134)
Q Consensus 986 ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~--~r~--g~~~raRalFErAl~s~~~~-~s~~LWr~Y 1060 (1134)
.|..++++-...+.+.+|-=.|+..+...|..... |.-..|+ ..| .|...+|..|++||. .++ ....|.-.|
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~-f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~~~ral~GI~ 232 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY-FQRLAEVLYTQGGAENLELARKYYERALK--LNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChHhHHHHHHHH
Confidence 99988888777778888888888888887743322 2222222 222 377889999999998 343 334444444
Q ss_pred H
Q 001167 1061 I 1061 (1134)
Q Consensus 1061 I 1061 (1134)
+
T Consensus 233 l 233 (289)
T KOG3060|consen 233 L 233 (289)
T ss_pred H
Confidence 4
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=18 Score=44.32 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH-
Q 001167 906 ALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP- 984 (1134)
Q Consensus 906 ~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~- 984 (1134)
.++...++|.+-++--+.++++.... ++.. ....++.|.+...+.... -..++-++|..+-..+|.+.
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~l----p~~~--p~~~~~~ll~~~t~~~~~-----~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASL----PGMS--PESLFPILLQEATKVREK-----KHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhC----CccC--chHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHhccCCchhH
Confidence 44556677777776655555544321 1110 012234444433332221 01245677888889999994
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcC----CCC
Q 001167 985 KLFNTLVEISNLYTTPNKLRWIFDLYCHK----------KPSLVVSLFALAFEMSRKGPPHRIRGLFERALAN----DTV 1050 (1134)
Q Consensus 985 ~ll~~~~~lE~~~~~~~raR~il~~~~~~----------~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s----~~~ 1050 (1134)
..+...+++-...|.+..|-.++....+. -|.++..+.+. ..++++...+-+++..||.- ..+
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l---~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVAL---YYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHH---HHhccCCccHHHHHHHHHHHHHHhccc
Confidence 33344567777788999998888833311 22333333333 33456667788999999952 111
Q ss_pred -CCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHH-HHhhhcCcccccchHH
Q 001167 1051 -RCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQ-EVMRDKELNLRTDIYE 1128 (1134)
Q Consensus 1051 -~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~-dvM~EKeLRir~dleE 1128 (1134)
..--.+|+..+.|+.+. |+.+.|..++..-+...|.+-.+...-+..+.. ++|+.=.++- .+--+++|- -||+++
T Consensus 454 s~~l~~~~~~aa~f~lr~-G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~-~d~eka~~l~k~L~p~~~l~-~vdVd~ 530 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRH-GNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR-LDPEKAESLSKKLPPLKGLK-AVDVDA 530 (652)
T ss_pred chHHHhHHHHHhHHHHhc-CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh-cCHHHHHHHhhcCCCcccch-hcCchH
Confidence 11235888999999996 999999999999999999999888777765422 2343322222 233455555 445443
No 102
>PLN02789 farnesyltranstransferase
Probab=94.18 E-value=9.7 Score=44.18 Aligned_cols=166 Identities=5% Similarity=-0.101 Sum_probs=106.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001167 914 FEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEI 993 (1134)
Q Consensus 914 fe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~l 993 (1134)
+..|...++.++..+++++... +..-.+|..+.-++...+. .......+.+.++|+..|+|...|..-..+
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~n--------pknyqaW~~R~~~l~~l~~-~~~~~el~~~~kal~~dpkNy~AW~~R~w~ 151 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDN--------PKNYQIWHHRRWLAEKLGP-DAANKELEFTRKILSLDAKNYHAWSHRQWV 151 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHC--------CcchHHhHHHHHHHHHcCc-hhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3444335789999999988763 2334467766555543321 112456778889999999999999644444
Q ss_pred HhhCCChhHHHHHHHHHHhhCC-CHHHH--HHHHHHHHHc-CC---CchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH
Q 001167 994 SNLYTTPNKLRWIFDLYCHKKP-SLVVS--LFALAFEMSR-KG---PPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY 1066 (1134)
Q Consensus 994 E~~~~~~~raR~il~~~~~~~p-s~~~w--lfaI~~E~~r-~g---~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~ 1066 (1134)
-..++.++.+-..+++++..++ +...| .+.+...+.. ++ ...........||. ..|.+...|.-+......
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhc
Confidence 4567788999999999998877 44555 3333222211 11 12355666678887 567788899654444333
Q ss_pred h---cCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1067 I---ASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1067 ~---~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
. .++...|...+.++++.+|.+..
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 230 DKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred CCcccccchhHHHHHHHhhcccCCcHH
Confidence 1 12345588889999998887653
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.05 E-value=8.6 Score=47.50 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=127.6
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhccCCchhccCChH-HHHHHHHHHHHh
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFF-----GNIDHARRVFDMALSSIEGLPLVLKSNAP-LLYLWYAEVELS 839 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~-----Gn~e~ARkVf~tALs~~~~~~~~~~~~~~-~lwl~yaemEl~ 839 (1134)
..+.|.++.+.||+.||+|...|..|+..-... .+.+.-..+|+..-+..|.. ..+ .+-+.++.
T Consensus 53 ~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s------~~~~rl~L~~~~---- 122 (517)
T PF12569_consen 53 RKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS------DAPRRLPLDFLE---- 122 (517)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc------cchhHhhcccCC----
Confidence 357899999999999999999999998886433 25666677888665555421 111 11111110
Q ss_pred cCCCCCCchHHH-HHHHHH-hcCCCCC--CCCccCC-CChhHHHHHHHHHHHHHHHHHHHhhh-cC--------CCchHH
Q 001167 840 SNSGSDPDSSLR-AIHVLS-CLGSGST--YTPFKCQ-PSNVQVLRAHQGYMERIKAVRSAWLR-GA--------VSDQSI 905 (1134)
Q Consensus 840 ~~~~~~~e~~~r-Ai~iL~-~l~~~~~--~~~~~~~-~s~~~ILkAr~~~~~~l~~~~s~l~~-~~--------~~~~~v 905 (1134)
| +.+.. +-..|. .+..|.+ +..-... ..+. | .....+.+......+.. +. ....++
T Consensus 123 -g-----~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~---K-~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 123 -G-----DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPE---K-AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred -H-----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChh---H-HHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 0 11211 212221 2222211 0000000 0000 0 01122222221111211 11 112334
Q ss_pred HHHHHH--HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC
Q 001167 906 ALICSA--ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS 983 (1134)
Q Consensus 906 ~l~~~~--Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N 983 (1134)
.+|+.| |....-.+.++.|++.+++||+ ++|+.-.+++..++++.+. +++..+-+.+..|-.+-+.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--------htPt~~ely~~KarilKh~---G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIE--------HTPTLVELYMTKARILKHA---GDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhCChhh
Confidence 455433 4444446889999999999988 5678888999999999765 46878888888888888887
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHhhC
Q 001167 984 PKLFNTLVEISNLYTTPNKLRWIFDLYCHKK 1014 (1134)
Q Consensus 984 ~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ 1014 (1134)
--+=...+..-.+.+.++.|..++...+...
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 7665556666678889999999999887765
No 104
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.92 E-value=0.095 Score=46.10 Aligned_cols=53 Identities=19% Similarity=0.056 Sum_probs=49.1
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEG 817 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~ 817 (1134)
.+...|.+++..+|+.+|.+..+|..+|.+....|++..|...|+++++..|.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34667899999999999999999999999999999999999999999998883
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.74 E-value=1.9 Score=42.48 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+..++...|.++.+|..+.......+....+..+|++++...| +...|.....+-... |...+|...|+
T Consensus 31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~ 109 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL-GEPESALKALD 109 (135)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 4567788999999999999999998777777677888999999999988777 456664433343344 78999999999
Q ss_pred HHhcCCCCCCCHHHHHH
Q 001167 1043 RALANDTVRCSVVLWRW 1059 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~ 1059 (1134)
+++. ..+.+...+..
T Consensus 110 ~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 110 LAIE--ICGENPEYSEL 124 (135)
T ss_pred HHHH--hccccchHHHH
Confidence 9998 44555554443
No 106
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.60 E-value=0.16 Score=40.57 Aligned_cols=42 Identities=24% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHH
Q 001167 786 LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAE 835 (1134)
Q Consensus 786 ~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yae 835 (1134)
..|..+|..+...|+++.|.++|+++++..|. ...+|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--------~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD--------DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------CHHHHHHhhh
Confidence 36899999999999999999999999999883 2356665553
No 107
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=93.47 E-value=0.078 Score=39.54 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=22.3
Q ss_pred chHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 1034 PHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 1034 ~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
..|||++|||.|. +..++..|+.|..||-
T Consensus 3 ~dRAR~IyeR~v~---~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 3 FDRARSIYERFVL---VHPEVKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHH---hCCCchHHHHHHHhhc
Confidence 5788999999887 2245788999988873
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.44 E-value=5.3 Score=51.13 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=91.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHH-HHHHHHHHcCCCchHHHHHHHHHhcCCCCCC
Q 001167 975 HGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSL-FALAFEMSRKGPPHRIRGLFERALANDTVRC 1052 (1134)
Q Consensus 975 ~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wl-faI~~E~~r~g~~~raRalFErAl~s~~~~~ 1052 (1134)
.-...||++...+..+++++.+.+..+.+...++.++.-+| +...++ ++..+ .+.+-...|...+++++. ..+.
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L--~~~~~~eeA~~~~~~~l~--~~p~ 152 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGV--KRQQGIEAGRAEIELYFS--GGSS 152 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHH--HHhccHHHHHHHHHHHhh--cCCC
Confidence 34567999998888899999999999999999999999988 566664 33333 222678999999999998 6677
Q ss_pred CHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1053 SVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1053 s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
+...-.......... |..+.|-.+|.|++..-|.....|+
T Consensus 153 ~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 153 SAREILLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred CHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHH
Confidence 888777777777775 9999999999999997787554443
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.23 E-value=0.25 Score=42.43 Aligned_cols=54 Identities=19% Similarity=0.049 Sum_probs=47.9
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
|+...|+..|++++. ..|.++..|..+..+...+ |+++.|..+|.+++...|.+
T Consensus 11 g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 11 GDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDN 64 (65)
T ss_dssp THHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-
T ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 789999999999999 5588999999999998886 99999999999999999976
No 110
>PLN02789 farnesyltranstransferase
Probab=93.09 E-value=15 Score=42.60 Aligned_cols=165 Identities=8% Similarity=-0.025 Sum_probs=108.4
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
+..++|+.++.+++... |.+-.+|..+..++...+ ..+..+...+.++++.+|+|...|..-..+-...+
T Consensus 51 e~serAL~lt~~aI~ln--------P~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 51 ERSPRALDLTADVIRLN--------PGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 35788999999998863 455678888877775432 24567788899999999999998863322223333
Q ss_pred C--hhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHH--HHHhHHHhcCC---
Q 001167 999 T--PNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRW--YIAYEVYIASN--- 1070 (1134)
Q Consensus 999 ~--~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~--YI~fE~~~~~n--- 1070 (1134)
. ..+.-.++++++..+| +...|..-.+.=... +....+...++++|. ..+.+...|.. ++-+.....+.
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccc
Confidence 3 3567788888888887 566674332221122 567889999999998 44556666643 33322100011
Q ss_pred -HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1071 -PFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1071 -~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
.+.+-.....||..+|.+-..|--..
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 24566666799999998887774333
No 111
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.08 E-value=0.4 Score=42.08 Aligned_cols=59 Identities=17% Similarity=0.021 Sum_probs=53.0
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
++...+...+++++. ..|.++.+|..+..+.... |++..|...|.+++..||......+
T Consensus 9 ~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 9 EDYEEALEVLERALE--LDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 688999999999998 5678999999999999986 9999999999999999998776544
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=92.97 E-value=2.9 Score=49.90 Aligned_cols=137 Identities=20% Similarity=0.114 Sum_probs=99.8
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+.+.|++....|++..|+|.-+|..-+.+....|+...|-+-|++|+...|. ...+++.|+++.+..|+
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~--------~~~l~~~~a~all~~g~- 389 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN--------SPLLQLNLAQALLKGGK- 389 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------ccHHHHHHHHHHHhcCC-
Confidence 345789999999999999999999999999999999999999999999998872 35799999999998764
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
.++|+.+|.......+-+| .+.-+-|+ .|.+. |. . .-....+|--.++.++++.
T Consensus 390 -----~~eai~~L~~~~~~~p~dp------~~w~~LAq-ay~~~----------g~---~-~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 390 -----PQEAIRILNRYLFNDPEDP------NGWDLLAQ-AYAEL----------GN---R-AEALLARAEGYALAGRLEQ 443 (484)
T ss_pred -----hHHHHHHHHHHhhcCCCCc------hHHHHHHH-HHHHh----------Cc---h-HHHHHHHHHHHHhCCCHHH
Confidence 6689999865522211111 11111111 22221 11 1 1122366777788899999
Q ss_pred HHHHHHHHHHhh
Q 001167 924 GIEVLHQAFAMV 935 (1134)
Q Consensus 924 A~~v~~~al~~~ 935 (1134)
|...+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999999887764
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.90 E-value=0.18 Score=43.67 Aligned_cols=58 Identities=14% Similarity=-0.008 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
|+...|..+|++++. ..|.+..+|..+..+.+.. |+++.|+.+|.+++...|.+..++
T Consensus 5 ~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 5 GDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp THHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred cCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCHHHHH
Confidence 678899999999998 6788999999999999986 999999999999999999876554
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.56 E-value=34 Score=44.47 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=46.8
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHH--HHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDM--ALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~t--ALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
+.-|....+.+-..+|+|+.-|..-|.+-...|.+-.+-++|.. ++.+..+ ....+-+|++-.|....||+
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g-------ka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG-------KAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc-------ccchhhHHHHHHHHHHhccc
Confidence 33344555555556888888888888888888888778788776 4444331 23456667777777666555
Q ss_pred C
Q 001167 845 D 845 (1134)
Q Consensus 845 ~ 845 (1134)
.
T Consensus 939 ~ 939 (1238)
T KOG1127|consen 939 I 939 (1238)
T ss_pred h
Confidence 3
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=92.22 E-value=6.2 Score=39.87 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCCCCChHHHHHHHhhhcCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhc
Q 001167 764 GCSVTPCQPLAKGLLKSDRQD---VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSS 840 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~n---l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~ 840 (1134)
..+...+...+..|++.+|++ ..-+...|......|+++.|..+|+.++...+.. . -.....+..+.+.+..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--~---l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP--E---LKPLARLRLARILLQQ 98 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--H---HHHHHHHHHHHHHHHc
Confidence 445667788899999999998 4556667788888999999999999999866411 1 1234566667777776
Q ss_pred CCCCCCchHHHHHHHHHhc
Q 001167 841 NSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 841 ~~~~~~e~~~rAi~iL~~l 859 (1134)
+. ++.|+.+|...
T Consensus 99 ~~------~d~Al~~L~~~ 111 (145)
T PF09976_consen 99 GQ------YDEALATLQQI 111 (145)
T ss_pred CC------HHHHHHHHHhc
Confidence 53 77898888543
No 116
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.11 E-value=37 Score=41.85 Aligned_cols=259 Identities=14% Similarity=0.001 Sum_probs=132.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccC-ChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 001167 781 DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKS-NAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~-~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l 859 (1134)
.|.-+....-.|.+....|.++.|..++..|+..+..... +.- .+...-.+++.+....+. +..|+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k------~~eAv------ 261 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGK------YDEAV------ 261 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhcc------HHHHH------
Confidence 4555555555788888999999999999999987431100 000 011122234444444332 22333
Q ss_pred CCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCcc
Q 001167 860 GSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPER 939 (1134)
Q Consensus 860 ~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~ 939 (1134)
..|++++..... .-|...+..+......|.+-+-++.+..|...+++|+......
T Consensus 262 ----------------------~ly~~AL~i~e~--~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~- 316 (508)
T KOG1840|consen 262 ----------------------NLYEEALTIREE--VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL- 316 (508)
T ss_pred ----------------------HHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-
Confidence 333333322110 1122222333333345555566777777777777777653211
Q ss_pred ccCCccHHHHHHHHHH--HHHHhhccCCHHHHHHHHHHHHHh----C-CCCHHHHHHHHH---HHhhCCChhHHHHHHHH
Q 001167 940 RSCSHQLEFLFNFNVR--MLQRHHKQLSLSTVWETTLHGLQI----Y-PYSPKLFNTLVE---ISNLYTTPNKLRWIFDL 1009 (1134)
Q Consensus 940 ~~~~~~~E~L~~~~a~--ll~~~~~~~~l~~~R~~l~~aL~~----f-P~N~~ll~~~~~---lE~~~~~~~raR~il~~ 1009 (1134)
....+..+-..... .++.+. .....+..++.+++.+ + +.|+.+=..+.+ +-...|-...++.+|.+
T Consensus 317 --~~~~~~~v~~~l~~~~~~~~~~--~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 317 --LGASHPEVAAQLSELAAILQSM--NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred --hccChHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 11223333222211 122222 3333344444444443 3 334333333444 44578889999999999
Q ss_pred HHhhCC----------CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCC--CCCCCHHHHHHHH---HhHHHhcCCHHHH
Q 001167 1010 YCHKKP----------SLVVSLFALAFEMSRKGPPHRIRGLFERALAND--TVRCSVVLWRWYI---AYEVYIASNPFAA 1074 (1134)
Q Consensus 1010 ~~~~~p----------s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~--~~~~s~~LWr~YI---~fE~~~~~n~~rA 1074 (1134)
++.... ...+|-.+..++. ......+-.+|++++.-- .++.++.+=-.|. ..--.+ |+++.|
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~~la~~~~~--~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~-g~~e~a 469 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLNQLAEAYEE--LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ-GNYEAA 469 (508)
T ss_pred HHHHHHhcccCcChhhhHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-ccHHHH
Confidence 876531 3466755544432 245666777888777521 1233333322333 323344 999999
Q ss_pred HHHHHHHHHh
Q 001167 1075 RRIFFRAIHA 1084 (1134)
Q Consensus 1075 R~Vf~RAL~~ 1084 (1134)
-.+..++++.
T Consensus 470 ~~~~~~~~~~ 479 (508)
T KOG1840|consen 470 EELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHH
Confidence 9999988873
No 117
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.92 E-value=0.35 Score=38.62 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=34.3
Q ss_pred HHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001167 1055 VLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1055 ~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
..|..+.+..... |++++|.++|.++|+.+|.+..+|+.
T Consensus 2 ~~~~~la~~~~~~-G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRL-GQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4688888888885 99999999999999999999988864
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.81 E-value=28 Score=45.25 Aligned_cols=50 Identities=20% Similarity=0.068 Sum_probs=43.5
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
...+-.=+...|..+|.+..+|...+....+.|.+..|-|||++|...-|
T Consensus 578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 44455667788888999999999999999999999999999999977665
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.73 E-value=3.2 Score=35.89 Aligned_cols=90 Identities=8% Similarity=-0.033 Sum_probs=48.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001167 914 FEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEI 993 (1134)
Q Consensus 914 fe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~l 993 (1134)
..+..+.++.|..++++++...+ ....++...+.++... .....+...+.+++...|.+...+..++.+
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKL---GKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 33445667777777777665422 1123444444443322 234556667777777777776545444444
Q ss_pred HhhCCChhHHHHHHHHHHhhC
Q 001167 994 SNLYTTPNKLRWIFDLYCHKK 1014 (1134)
Q Consensus 994 E~~~~~~~raR~il~~~~~~~ 1014 (1134)
....+....+...+..++..+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccC
Confidence 444455556666665554433
No 120
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.57 E-value=3.8 Score=50.64 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---hhCCC-----hhHHHHHHHHHHhh--CC-CHHHH-HHHHHHHHHcCC
Q 001167 965 SLSTVWETTLHGLQIYPYSPKLFNTLVEIS---NLYTT-----PNKLRWIFDLYCHK--KP-SLVVS-LFALAFEMSRKG 1032 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE---~~~~~-----~~raR~il~~~~~~--~p-s~~~w-lfaI~~E~~r~g 1032 (1134)
...+++.++++|++.-|++...+..++... ..... ...+...+.++... .+ ....+ ..++... .+ |
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~-g 434 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VK-G 434 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hc-C
Confidence 356899999999999999976664322211 11221 12334444443332 22 22333 3444433 34 7
Q ss_pred CchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1033 PPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1033 ~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
....|...|++|+... + +..-|.++..+.... |+.+.|-..|.+|++.-|.....|
T Consensus 435 ~~~~A~~~l~rAl~L~--p-s~~a~~~lG~~~~~~-G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 435 KTDEAYQAINKAIDLE--M-SWLNYVLLGKVYELK-GDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred CHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCchHH
Confidence 9999999999999843 3 566677777777764 999999999999999999877544
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.95 E-value=7.7 Score=39.33 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHHH-HHHHHHHHcCCCchHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVSL-FALAFEMSRKGPPHRIRGLF 1041 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~wl-faI~~E~~r~g~~~raRalF 1041 (1134)
+.+..+...+..++..-|.+...|..+...-...+....+...|.+++..+|. ...|. .+..+ ...|....|+..|
T Consensus 38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l--~~~g~~~eAi~~~ 115 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL--KMMGEPGLAREAF 115 (144)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHcCCHHHHHHHH
Confidence 45777888999999999999999988887777889999999999999998884 34442 23323 2338899999999
Q ss_pred HHHhcCCCCCCCHHHHHHHH
Q 001167 1042 ERALANDTVRCSVVLWRWYI 1061 (1134)
Q Consensus 1042 ErAl~s~~~~~s~~LWr~YI 1061 (1134)
++|+. ..+..+..|...-
T Consensus 116 ~~Al~--~~p~~~~~~~~~~ 133 (144)
T PRK15359 116 QTAIK--MSYADASWSEIRQ 133 (144)
T ss_pred HHHHH--hCCCChHHHHHHH
Confidence 99998 6677888885443
No 122
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=14 Score=44.06 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=77.0
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC---------CHHHHHHH-------HHH---HHHc
Q 001167 971 ETTLHGLQI-YPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP---------SLVVSLFA-------LAF---EMSR 1030 (1134)
Q Consensus 971 ~~l~~aL~~-fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p---------s~~~wlfa-------I~~---E~~r 1030 (1134)
.-.+.-++. ||+++.+-..-+......+.++.|-.+|+..+++.| |-.+++.- ... .+.+
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 334444445 899987665444445667889999999999998877 11121111 111 1111
Q ss_pred --C-------------CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1031 --K-------------GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1031 --~-------------g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
. +..++|-.-|.|||. -+|.....|-+--+=-+.. +|..+|-.-|-||+..||-.-.-|
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEm-KNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEM-KNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHh-cccHHHHHHHHHHHhcCchhHHHH
Confidence 0 345677778888888 5677888998744322333 778899999999999999665544
No 123
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.65 E-value=3.7 Score=48.34 Aligned_cols=52 Identities=6% Similarity=-0.003 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP 1015 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p 1015 (1134)
..+..+...+.++|...|++..+|..++......+..+.|...+++++..+|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3556677777777777777776665444444444455555555555544444
No 124
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.51 E-value=0.43 Score=41.44 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=48.0
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcc
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFG-NIDHARRVFDMALSSIE 816 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~G-n~e~ARkVf~tALs~~~ 816 (1134)
..+.+.|...++..|+.+|++..+|...|.+....| +++.|.+.|++|++..|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344677899999999999999999999999999999 79999999999998765
No 125
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=90.45 E-value=0.38 Score=35.98 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHhhCCCHHHHHHHHHHHH
Q 001167 999 TPNKLRWIFDLYCHKKPSLVVSLFALAFEM 1028 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~ps~~~wlfaI~~E~ 1028 (1134)
..+|||.||++.+...|.+..|+-.+.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHhhc
Confidence 468999999999999999999998888874
No 126
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.44 E-value=20 Score=44.51 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=54.3
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
-.+|-...+..|..++.+---|-.|+.+.....+++.|-|-|..||...+ +..+||..-+-+..+
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--------dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--------DNLQILRDLSLLQIQ 121 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHH
Confidence 46788888889999999999999999999999999999999999998877 234677766555444
No 127
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.10 E-value=23 Score=40.67 Aligned_cols=63 Identities=22% Similarity=0.110 Sum_probs=33.9
Q ss_pred chHHHHHHHHHhcCCCCC-CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHH
Q 001167 1034 PHRIRGLFERALANDTVR-CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR-LWLDGFL 1097 (1134)
Q Consensus 1034 ~~raRalFErAl~s~~~~-~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~-L~m~a~~ 1097 (1134)
..-+-.-|+||+.+...+ .-+.+|-..-...+.. |++.-|++.|--||-..|.+.+ |--.|+.
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 344455555555432221 2345555444444443 6777777777777777776554 3334443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=90.03 E-value=44 Score=40.36 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH
Q 001167 905 IALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP 984 (1134)
Q Consensus 905 v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~ 984 (1134)
.....-.|+-.|+.+.++.|+..+...+...+ ..-.++.+...++..+. ....+-+.+.+++.++|++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--------~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQP--------DNPYYLELAGDILLEAN---KAKEAIERLKKALALDPNSP 374 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcc
Confidence 34445667888888889999999887666543 33445556666654443 45567788889999999999
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHH-HHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 001167 985 KLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVS-LFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIA 1062 (1134)
Q Consensus 985 ~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~w-lfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~ 1062 (1134)
.++..|.+.-...+...++-.++.+.+...| ....| ++|-.++. . |+..++...+-.+.-
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~-g~~~~a~~A~AE~~~---------------- 436 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-L-GNRAEALLARAEGYA---------------- 436 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-h-CchHHHHHHHHHHHH----------------
Confidence 8888888887777888888888888888877 45667 45544443 3 454444443322221
Q ss_pred hHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1063 YEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1063 fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
..|+++.|...+.||.+...-.-..|
T Consensus 437 ----~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 437 ----LAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred ----hCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 13777777777777777664333344
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=89.48 E-value=4 Score=47.99 Aligned_cols=95 Identities=6% Similarity=-0.109 Sum_probs=70.1
Q ss_pred hhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHH
Q 001167 995 NLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 995 ~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
...+.+..|..+|.+++...| ....|.....+-+.. |....|...|++|+. ..+.++..|.......... |+++.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~-g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l-g~~~e 88 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL-GNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL-EEYQT 88 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh-CCHHH
Confidence 355788889999999998877 445554333332334 788999999999998 4566777777666666654 89999
Q ss_pred HHHHHHHHHHhCCCcHHHHH
Q 001167 1074 ARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1074 AR~Vf~RAL~~CPwsK~L~m 1093 (1134)
|...|.+|+...|....+.+
T Consensus 89 A~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999998876543
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=89.05 E-value=5.8 Score=47.29 Aligned_cols=94 Identities=13% Similarity=0.051 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 997 YTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 997 ~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
.+..+.+..+|++.....|.+...+.-+... . +.-..|-.++..+|. ..+.+..|.....+|.+.. ++.+.|..
T Consensus 182 t~~~~~ai~lle~L~~~~pev~~~LA~v~l~--~-~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k-~~~~lAL~ 255 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEVAVLLARVYLL--M-NEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSK-KKYELALE 255 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcHHHHHHHHHHh--c-CcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc-CCHHHHHH
Confidence 3456777777777777777655554444332 2 344566667777776 4566677777777777764 77777777
Q ss_pred HHHHHHHhCCCcHHHHHHHH
Q 001167 1077 IFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1077 Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
+..+|+...|....-|..-.
T Consensus 256 iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred HHHHHHHhCchhHHHHHHHH
Confidence 77777777777776665444
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=88.43 E-value=11 Score=35.68 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=61.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH---HHH
Q 001167 911 AALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP---KLF 987 (1134)
Q Consensus 911 ~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~---~ll 987 (1134)
.+......++++.|...|..++...+.. +.....+...+...... ..+..+...+..++..+|.++ ..+
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKS-----TYAPNAHYWLGEAYYAQ---GKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc-----cccHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3444555678889999998887754321 11233444444444332 356678888888888888863 334
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHhhCC
Q 001167 988 NTLVEISNLYTTPNKLRWIFDLYCHKKP 1015 (1134)
Q Consensus 988 ~~~~~lE~~~~~~~raR~il~~~~~~~p 1015 (1134)
..++.+....+..+.+...+.+++...|
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 4445555566777888888888777766
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=54 Score=36.64 Aligned_cols=152 Identities=11% Similarity=-0.041 Sum_probs=104.6
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
+...-|..++++....++. +-++-.+.+-++.-. +....+-+.++.-|+.-|.|+.+...-+.+-...|
T Consensus 66 ~~~~lAq~C~~~L~~~fp~--------S~RV~~lkam~lEa~---~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPG--------SKRVGKLKAMLLEAT---GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred cchHHHHHHHHHHHHhCCC--------ChhHHHHHHHHHHHh---hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 4566777788876666532 234444455444322 34556888999999999999998876666654334
Q ss_pred ChhHHHHHHHHHHhhCC-CHHHHHHH--HHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc--CCHHH
Q 001167 999 TPNKLRWIFDLYCHKKP-SLVVSLFA--LAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA--SNPFA 1073 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~p-s~~~wlfa--I~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~--~n~~r 1073 (1134)
-.-.|-+-+...+.+.+ ....|... |++++ +...+|---+|..+- ..|+++.+...|.+..-.++ .|++-
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~---~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE---GDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH---hHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 33344444445555555 56788544 55544 567788888888887 57889999999988665543 38899
Q ss_pred HHHHHHHHHHhCC
Q 001167 1074 ARRIFFRAIHACP 1086 (1134)
Q Consensus 1074 AR~Vf~RAL~~CP 1086 (1134)
||..|.||+..||
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999999
No 133
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=87.30 E-value=3.2 Score=41.39 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCChHHHHHHHhhh--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001167 767 VTPCQPLAKGLLKS--DRQDVLLCGVYARREAFFGNIDHARRVFDMAL 812 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~--~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tAL 812 (1134)
..+++.+.+.|..+ -.....+|.+||.+....|+++.|.+||+.+|
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 34899999999986 67778999999999999999999999999875
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.24 E-value=34 Score=34.47 Aligned_cols=114 Identities=10% Similarity=-0.009 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHhhCCChhHHHHHHHHHHhhCCCH----HHHHHHHHHHHHcCCCchH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKL---FNTLVEISNLYTTPNKLRWIFDLYCHKKPSL----VVSLFALAFEMSRKGPPHR 1036 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~l---l~~~~~lE~~~~~~~raR~il~~~~~~~ps~----~~wlfaI~~E~~r~g~~~r 1036 (1134)
.+...+...++..+..||+++.- ...++..-...+..+.+...|..++...+.. ..++......+.. |....
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHH
Confidence 45666777888889999999421 1123344456789999999999999876532 2334334444555 78889
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHH
Q 001167 1037 IRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAI 1082 (1134)
Q Consensus 1037 aRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL 1082 (1134)
|...++.... ....+..+.+.-...... |+.+.|+..|.+||
T Consensus 104 Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~-g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQIPD---EAFKALAAELLGDIYLAQ-GDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhccC---cchHHHHHHHHHHHHHHC-CCHHHHHHHHHHhC
Confidence 9999976322 233455666666666664 99999999999885
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=87.06 E-value=43 Score=40.44 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 001167 966 LSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERA 1044 (1134)
Q Consensus 966 l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErA 1044 (1134)
...++....+|++.-|.|+.-+......-.-.+..+.+...|++++.-+| +...|.+..+..... |...+++..+++|
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-G~~~~a~~~i~~a 398 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN-EKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 35688889999999999986554344333223447888999999999888 557787776666655 7899999999999
Q ss_pred hcCCCCCCCH---HHHH-HHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1045 LANDTVRCSV---VLWR-WYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1045 l~s~~~~~s~---~LWr-~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
+...+.+.-. .+|. +|.. .-++.|-.+||+--. .-+..+.++.+.+|
T Consensus 399 lrLsP~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 449 (458)
T PRK11906 399 LQLEPRRRKAVVIKECVDMYVP------NPLKNNIKLYYKETE--SESHRVIIDNILKL 449 (458)
T ss_pred hccCchhhHHHHHHHHHHHHcC------CchhhhHHHHhhccc--cccchhhHHHHHHH
Confidence 9866655444 4565 5532 346778888887654 23455667777665
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=86.70 E-value=15 Score=34.51 Aligned_cols=94 Identities=10% Similarity=-0.079 Sum_probs=56.5
Q ss_pred hhCCChhHHHHHHHHHHhhCCC----HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC-CCCHHHHHHHHHhHHHhcC
Q 001167 995 NLYTTPNKLRWIFDLYCHKKPS----LVVSLFALAFEMSRKGPPHRIRGLFERALANDTV-RCSVVLWRWYIAYEVYIAS 1069 (1134)
Q Consensus 995 ~~~~~~~raR~il~~~~~~~ps----~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~-~~s~~LWr~YI~fE~~~~~ 1069 (1134)
...+..+++...|..++...|. ...++.....-... +....|...|+.++...+. +..+..|.......... +
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~ 90 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL-G 90 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh-C
Confidence 3455666677777666665542 12222222222222 6778888888888863221 22344555555555554 8
Q ss_pred CHHHHHHHHHHHHHhCCCcHH
Q 001167 1070 NPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
+.+.|...|.+++..-|.+..
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 91 DKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred ChHHHHHHHHHHHHHCcCChh
Confidence 888899999999998887764
No 137
>PRK11906 transcriptional regulator; Provisional
Probab=86.39 E-value=6.9 Score=46.97 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHH---HhCCCCHHHHHH--HHHHHh-hCC------ChhHHHHHHHHHHhhCC--CHHHHHHHHHHHHHc
Q 001167 965 SLSTVWETTLHGL---QIYPYSPKLFNT--LVEISN-LYT------TPNKLRWIFDLYCHKKP--SLVVSLFALAFEMSR 1030 (1134)
Q Consensus 965 ~l~~~R~~l~~aL---~~fP~N~~ll~~--~~~lE~-~~~------~~~raR~il~~~~~~~p--s~~~wlfaI~~E~~r 1030 (1134)
...++..++.+++ ..-|....-+.. ++.+.. -.+ ....++++.++++...+ ....|+.+.-.=+ .
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence 4567788899999 666766544432 222222 111 23456778888888766 4455654432211 2
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1031 KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1031 ~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
+....+..+|++|+. -+|.++..|-.+-....- +|+.+.|...+.+|++..|.-
T Consensus 352 -~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 352 -GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFH-NEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred -cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCchh
Confidence 458899999999998 678899999988887776 599999999999999999953
No 138
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.89 E-value=1 Score=34.08 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHH
Q 001167 774 AKGLLKSDRQDVLLCGVYARREAFFGNIDHARR 806 (1134)
Q Consensus 774 aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARk 806 (1134)
.++.|+.+|+|...|..+|.+....|+++.|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 467889999999999999999999999999874
No 139
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.80 E-value=1.5e+02 Score=39.26 Aligned_cols=277 Identities=7% Similarity=-0.104 Sum_probs=141.1
Q ss_pred CCCCChHHHHHHHhhhcCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHH--HHHHHHHHH
Q 001167 765 CSVTPCQPLAKGLLKSDRQDV-----LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPL--LYLWYAEVE 837 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl-----~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~--lwl~yaemE 837 (1134)
.+...|...+...|...+... ..+...+......|+++.|+..+..|+....... ..... .+...+.+.
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g----~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD----VYHYALWSLLQQSEIL 541 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHHHH
Confidence 345667777777766433221 2234556667789999999999999997654211 11111 122223344
Q ss_pred HhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHH
Q 001167 838 LSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVS-DQSIALICSAALFEE 916 (1134)
Q Consensus 838 l~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~-~~~v~l~~~~Alfe~ 916 (1134)
...|. ...|...+ .+.+..... .+... .....+....+...+
T Consensus 542 ~~~G~------~~~A~~~~----------------------------~~al~~~~~---~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 542 FAQGF------LQAAYETQ----------------------------EKAFQLIEE---QHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred HHCCC------HHHHHHHH----------------------------HHHHHHHHH---hccccccHHHHHHHHHHHHHH
Confidence 44332 33443332 222211100 00000 001111223455566
Q ss_pred HhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH---HHHHH--HH
Q 001167 917 LTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP---KLFNT--LV 991 (1134)
Q Consensus 917 Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~---~ll~~--~~ 991 (1134)
..+.++.|...+.+++....... ....-..+...+.+. ...+....+...+.+++..++... .++.. .+
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~---~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKIS---LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 67889999999998887642110 011111222223332 223566777788888877655431 11110 01
Q ss_pred --HHHhhCCChhHHHHHHHHHHhhCCCH-----HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC--CC--CCHHHHHHH
Q 001167 992 --EISNLYTTPNKLRWIFDLYCHKKPSL-----VVSLFALAFEMSRKGPPHRIRGLFERALANDT--VR--CSVVLWRWY 1060 (1134)
Q Consensus 992 --~lE~~~~~~~raR~il~~~~~~~ps~-----~~wlfaI~~E~~r~g~~~raRalFErAl~s~~--~~--~s~~LWr~Y 1060 (1134)
......+..+.++..+.......... ..++......... |...++..+|++|+.... .. .-.....++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 11123566777888876654322111 1122222222333 778999999999986311 11 112233334
Q ss_pred HHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1061 IAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1061 I~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
...... .|+.+.|+..|.+|+..+.-...
T Consensus 738 a~a~~~-~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 738 NQLYWQ-QGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHhCccch
Confidence 444444 48999999999999998865443
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=84.76 E-value=34 Score=42.41 Aligned_cols=152 Identities=6% Similarity=0.039 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHK---QLSLSTVWETTLHGLQI--YPYSPKLFNTLVEIS 994 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~---~~~l~~~R~~l~~aL~~--fP~N~~ll~~~~~lE 994 (1134)
+...|+.+|++|++..+.-. ..+..+. .+........ ...+..+...+.+++.. -|..+..+..+.-..
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a----~a~A~la--~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~ 430 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFT----YAQAEKA--LADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQA 430 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcH----HHHHHHH--HHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHH
Confidence 47899999999999753221 1111111 1111111111 01134555666665553 677776665555555
Q ss_pred hhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 995 NLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 995 ~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
...+.++.+...|++++.-+|+...|+....+-... |....|...|++|+..++.. ...+|+-=+-|. .|++.-
T Consensus 431 ~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~-G~~~eA~~~~~~A~~L~P~~-pt~~~~~~~~f~----~~~~~~ 504 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELK-GDNRLAADAYSTAFNLRPGE-NTLYWIENLVFQ----TSVETV 504 (517)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC-chHHHHHhcccc----ccHHHH
Confidence 556889999999999999999887776555444445 89999999999999854432 235555544443 456666
Q ss_pred HHHHHHHHH
Q 001167 1075 RRIFFRAIH 1083 (1134)
Q Consensus 1075 R~Vf~RAL~ 1083 (1134)
.--+||+++
T Consensus 505 ~~~~~~~~~ 513 (517)
T PRK10153 505 VPYLYRFLA 513 (517)
T ss_pred HHHHHhccC
Confidence 666666654
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.66 E-value=12 Score=38.82 Aligned_cols=53 Identities=9% Similarity=-0.211 Sum_probs=50.3
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
..+.++|.++++.|+..+|.+...|...|.+....|++..|-..|..|+...+
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI 100 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 55688999999999999999999999999999999999999999999999887
No 142
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=83.78 E-value=35 Score=41.84 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=66.1
Q ss_pred CChhHHHHHHHHHHhhCCCHHHH-HHHHHHHHHcCCCchHHHHHHHHHhcCCCC-C--CCHHHHHHHHHhHHHhcCCHHH
Q 001167 998 TTPNKLRWIFDLYCHKKPSLVVS-LFALAFEMSRKGPPHRIRGLFERALANDTV-R--CSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~ps~~~w-lfaI~~E~~r~g~~~raRalFErAl~s~~~-~--~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
.....+..++.......|.-.+| ++..+.+..+ |+.+.|...|++|+.+... + +..-+|-+-.-+.. ..++++
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~--~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF--QHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH--HchHHH
Confidence 35567777777777777766666 4556666655 7888888899988853211 1 11223443333333 378999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHH
Q 001167 1074 ARRIFFRAIHACPWSKRLWLDGFL 1097 (1134)
Q Consensus 1074 AR~Vf~RAL~~CPwsK~L~m~a~~ 1097 (1134)
|-..|.+.++...|||.+|.-...
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHH
Confidence 999999999999999998755443
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=83.73 E-value=29 Score=36.06 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+...+..++++.|...|++++...+.. ......+...+.+... .+....+...+.+++...|.+...+..
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDP-----NDRSYILYNMGIIYAS---NGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 45566666789999999999998753211 1122344444444433 256788999999999999999877655
Q ss_pred HHHHHhhCC
Q 001167 990 LVEISNLYT 998 (1134)
Q Consensus 990 ~~~lE~~~~ 998 (1134)
+.......+
T Consensus 112 lg~~~~~~g 120 (172)
T PRK02603 112 IAVIYHKRG 120 (172)
T ss_pred HHHHHHHcC
Confidence 554443333
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=83.58 E-value=13 Score=44.23 Aligned_cols=113 Identities=14% Similarity=-0.041 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhhcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHH
Q 001167 725 MEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHA 804 (1134)
Q Consensus 725 ~~~v~~~l~~~~~~~~~~~~l~e~~l~~~~l~~~~~~~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~A 804 (1134)
.+...++|..+....|... ++++. ++.. ...--.|-++.+..|+.+|++..|....|.+....|+++.|
T Consensus 185 ~~~ai~lle~L~~~~pev~-----~~LA~-v~l~-----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPEVA-----VLLAR-VYLL-----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHHHHHHHHhcCCcHH-----HHHHH-HHHh-----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4566677777776655421 11111 1111 11234677888999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCC
Q 001167 805 RRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSG 862 (1134)
Q Consensus 805 RkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~ 862 (1134)
-+|.++|+...|. ...-|..-|+.-+..+. ++.|+..|-+.|-.
T Consensus 254 L~iAk~av~lsP~--------~f~~W~~La~~Yi~~~d------~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 254 LEIAKKAVELSPS--------EFETWYQLAECYIQLGD------FENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHhCch--------hHHHHHHHHHHHHhcCC------HHHHHHHHhcCcCC
Confidence 9999999998882 23466667777777653 77899888776543
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=83.56 E-value=71 Score=42.11 Aligned_cols=210 Identities=10% Similarity=0.001 Sum_probs=114.8
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|..+++..|+.+|+.+.+|...|.+....|+++.|--| +++...+... . ..+--.+.......+.
T Consensus 44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-----~-~~~ve~~~~~i~~~~~- 114 (906)
T PRK14720 44 ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-----K-WAIVEHICDKILLYGE- 114 (906)
T ss_pred cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----c-hhHHHHHHHHHHhhhh-
Confidence 44578899999999999999999999999999999999999888 7777665321 1 1222222222222221
Q ss_pred CCCchHHHHHHHH-HhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHH
Q 001167 844 SDPDSSLRAIHVL-SCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWT 922 (1134)
Q Consensus 844 ~~~e~~~rAi~iL-~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~ 922 (1134)
-..|+..| .|+... ..--+|...|++.+..- ..+ +.....||.+--.. +++
T Consensus 115 -----~k~Al~~LA~~Ydk~------------g~~~ka~~~yer~L~~D--------~~n--~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 115 -----NKLALRTLAEAYAKL------------NENKKLKGVWERLVKAD--------RDN--PEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -----hhHHHHHHHHHHHHc------------CChHHHHHHHHHHHhcC--------ccc--HHHHHHHHHHHHHh-hHH
Confidence 12466555 243211 12234556666665321 112 22233444444444 999
Q ss_pred HHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhH
Q 001167 923 AGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNK 1002 (1134)
Q Consensus 923 ~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~r 1002 (1134)
+|++.+.+|+..+...+ +-...+.+|..+........ ..+.++.+.+...+. |-....++.-..+--.....|+.
T Consensus 167 KA~~m~~KAV~~~i~~k--q~~~~~e~W~k~~~~~~~d~--d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 167 KAITYLKKAIYRFIKKK--QYVGIEEIWSKLVHYNSDDF--DFFLRIERKVLGHRE-FTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHHhhh--cchHHHHHHHHHHhcCcccc--hHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhhhH
Confidence 99999999999865332 11235566655543221100 011122222222222 33333333322222234556777
Q ss_pred HHHHHHHHHhhCC
Q 001167 1003 LRWIFDLYCHKKP 1015 (1134)
Q Consensus 1003 aR~il~~~~~~~p 1015 (1134)
+-.+|..++...|
T Consensus 242 ~i~iLK~iL~~~~ 254 (906)
T PRK14720 242 VIYILKKILEHDN 254 (906)
T ss_pred HHHHHHHHHhcCC
Confidence 7777777766555
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=82.83 E-value=31 Score=35.80 Aligned_cols=91 Identities=8% Similarity=-0.130 Sum_probs=59.8
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCCC-HHHHH-HHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHh
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKPS-LVVSL-FALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYI 1067 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~ps-~~~wl-faI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~ 1067 (1134)
|.-.-...|..+.|..+|+-.+.-.|. ..-|+ ++.-+ ++.|+...|..+|++|+... +.++.---.--.+-+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~--Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~- 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC--QAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLA- 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHH-
Confidence 443444567788888888888877774 34453 23322 22378899999999999743 3333333322233333
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 001167 1068 ASNPFAARRIFFRAIHAC 1085 (1134)
Q Consensus 1068 ~~n~~rAR~Vf~RAL~~C 1085 (1134)
.|+.+.|+..|..||..|
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 389999999999999999
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=82.49 E-value=4 Score=37.03 Aligned_cols=77 Identities=17% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHhhhcCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 766 SVTPCQPLAKGLLKSDRQ--DVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~--nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
+.+.|-++++.+++..|. +-..|..+|.+..+.|+++.|-.++++ +...+ ........++...+..+.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------~~~~~~~l~a~~~~~l~~- 73 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------SNPDIHYLLARCLLKLGK- 73 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------CHHHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------CCHHHHHHHHHHHHHhCC-
Confidence 346788899999999884 466777799999999999999999999 44443 122333344777777653
Q ss_pred CCCchHHHHHHHHH
Q 001167 844 SDPDSSLRAIHVLS 857 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~ 857 (1134)
.+.|+.+|.
T Consensus 74 -----y~eAi~~l~ 82 (84)
T PF12895_consen 74 -----YEEAIKALE 82 (84)
T ss_dssp -----HHHHHHHHH
T ss_pred -----HHHHHHHHh
Confidence 778888774
No 148
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=82.41 E-value=14 Score=36.88 Aligned_cols=105 Identities=10% Similarity=-0.001 Sum_probs=71.6
Q ss_pred HHHHHHHHH-HhCCCC--HHHHHHHHHHHh-h---CCChhHHHHHHHHHHhhCC----------CHHHHHHHHHHHHHcC
Q 001167 969 VWETTLHGL-QIYPYS--PKLFNTLVEISN-L---YTTPNKLRWIFDLYCHKKP----------SLVVSLFALAFEMSRK 1031 (1134)
Q Consensus 969 ~R~~l~~aL-~~fP~N--~~ll~~~~~lE~-~---~~~~~raR~il~~~~~~~p----------s~~~wlfaI~~E~~r~ 1031 (1134)
.|..++..| ..+-.+ -..|..|+.|-. . .+.......+|++++.... -+.+|+..+.+ .
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~--~-- 79 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN--C-- 79 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh--c--
Confidence 355556565 434332 356778888732 1 1234556777777765421 35788877744 1
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRA 1081 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RA 1081 (1134)
...+.+|.-......+..++.+|..|..+.-.. |++..|..||.+|
T Consensus 80 ---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~-g~~~~A~~iy~~G 125 (125)
T smart00777 80 ---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAA-GRYKKADEVYQLG 125 (125)
T ss_pred ---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHc-CCHHHHHHHHHcc
Confidence 236778988888778889999999999988775 9999999999754
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.47 E-value=6 Score=34.12 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcC-CHHHHHHHHHHHHHhCC
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIAS-NPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~-n~~rAR~Vf~RAL~~CP 1086 (1134)
+....|...|++||. ..+.++.+|...-...... | +++.|...|.+||..-|
T Consensus 17 ~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp THHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcCc
Confidence 667777778888877 4566666666665555554 6 57777888887777665
No 150
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.87 E-value=70 Score=39.43 Aligned_cols=155 Identities=17% Similarity=0.110 Sum_probs=94.6
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
+++..|.-.|+.|+.. .|.+-..|+......-.. ..-..+-..|.++|++-|+|...++.++---...+
T Consensus 299 G~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaEN---E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAEN---ENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred CCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhc---cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 4567777777777663 355666676554322111 11224566788899999999887754332112223
Q ss_pred ChhHHHHHHHHHHhhCC-----------------------CHHHHHHHHHHHHHc--------------------CCCch
Q 001167 999 TPNKLRWIFDLYCHKKP-----------------------SLVVSLFALAFEMSR--------------------KGPPH 1035 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~p-----------------------s~~~wlfaI~~E~~r--------------------~g~~~ 1035 (1134)
....|-.+|++=+...| +....+-.+++|+.+ .+...
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 33344444554332221 112223334444332 15789
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1036 RIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1036 raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
|+...|+.||. ..|....||--+-.-... +...+.|-.-|.||++.=|.
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCC
Confidence 99999999998 678899999988776665 24567899999999998884
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.93 E-value=37 Score=38.62 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcC
Q 001167 773 LAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSN 841 (1134)
Q Consensus 773 ~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~ 841 (1134)
.++.-|.+||+|..=|.-.++....+|+...|-.-|.+|+...+ +.+.++..|++......
T Consensus 144 ~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 144 RLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--------DNPEILLGLAEALYYQA 204 (287)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhc
Confidence 34455678999999999999999999999999999999999888 34578899998877654
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=79.75 E-value=41 Score=34.91 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 001167 965 SLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP~ 982 (1134)
....+...+.+++...|+
T Consensus 50 ~~~~A~~~~~~al~~~~~ 67 (172)
T PRK02603 50 EYAEALENYEEALKLEED 67 (172)
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 444555555555555443
No 153
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=77.48 E-value=1.9e+02 Score=35.82 Aligned_cols=225 Identities=12% Similarity=-0.003 Sum_probs=105.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC-chHHHHHHHHHhc
Q 001167 781 DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP-DSSLRAIHVLSCL 859 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~-e~~~rAi~iL~~l 859 (1134)
.+.--..-+.||.+....|+++.|-.+|+.||++....-...-..+..++..-+.+-...|..... .-+++|+.|...+
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 444344455799999999999999999999999865321110001122233323332333222211 3467888877552
Q ss_pred CCCCCCCCc-cCCC-ChhHHHHHHHHHHHHHHHHHHHhh-----hcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001167 860 GSGSTYTPF-KCQP-SNVQVLRAHQGYMERIKAVRSAWL-----RGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAF 932 (1134)
Q Consensus 860 ~~~~~~~~~-~~~~-s~~~ILkAr~~~~~~l~~~~s~l~-----~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al 932 (1134)
.. ...+. .... +...+..-..-|+++....+..+. -+..+.......+.+|-+-+-++.++.|.+.|.+|+
T Consensus 317 ~~--~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 317 LG--ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred hc--cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 10 00000 0000 112222222233333322222111 111111223334456666677788999999999999
Q ss_pred HhhcCccc-cCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHhhCCChhHHH
Q 001167 933 AMVLPERR-SCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI-------YPYSPKLFNTLVEISNLYTTPNKLR 1004 (1134)
Q Consensus 933 ~~~~~~~~-~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~-------fP~N~~ll~~~~~lE~~~~~~~raR 1004 (1134)
+..-...- .+...-=.||++..-..+.. +...+-.++.+++.+ +|.-+.-+.-++..-...|..+.|-
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k----~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELK----KYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 97521100 01111223444433222211 122222333333221 2333333344445556777777777
Q ss_pred HHHHHHH
Q 001167 1005 WIFDLYC 1011 (1134)
Q Consensus 1005 ~il~~~~ 1011 (1134)
.+.+.+.
T Consensus 471 ~~~~~~~ 477 (508)
T KOG1840|consen 471 ELEEKVL 477 (508)
T ss_pred HHHHHHH
Confidence 7777554
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=77.25 E-value=2e+02 Score=35.85 Aligned_cols=256 Identities=9% Similarity=-0.024 Sum_probs=136.6
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDP 846 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~ 846 (1134)
...|-+....--+...+.+.+...-|.+....|+.+.|.++|..-|...|. ....|..+.......... ..
T Consensus 20 ~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--------n~~Yy~~L~~~~g~~~~~-~~ 90 (517)
T PF12569_consen 20 YEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--------NYDYYRGLEEALGLQLQL-SD 90 (517)
T ss_pred HHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHhhhccc-cc
Confidence 344444444444557777888888999999999999999999999998882 222333333333211110 11
Q ss_pred chHHHHHHHHHhcCCCCCCCCc--c--CCCChhHHHHHHHHHHHHHHHHHH-HhhhcCCCchHHHHHHHHHHHHHHhcCH
Q 001167 847 DSSLRAIHVLSCLGSGSTYTPF--K--CQPSNVQVLRAHQGYMERIKAVRS-AWLRGAVSDQSIALICSAALFEELTNGW 921 (1134)
Q Consensus 847 e~~~rAi~iL~~l~~~~~~~~~--~--~~~s~~~ILkAr~~~~~~l~~~~s-~l~~~~~~~~~v~l~~~~Alfe~Lt~~~ 921 (1134)
+.....+.++..+....+.... - .....+ ..|...+..... .+..| ++.- ++.+..|..+-
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g------~~F~~~~~~yl~~~l~Kg-vPsl-------F~~lk~Ly~d~ 156 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG------DEFKERLDEYLRPQLRKG-VPSL-------FSNLKPLYKDP 156 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCH------HHHHHHHHHHHHHHHhcC-CchH-------HHHHHHHHcCh
Confidence 1233334444444222211100 0 000111 122222222111 12222 2222 22233333333
Q ss_pred HHHH---HHHHHHHHhhcCc-c------ccCCccHHHHHHHH--HHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 922 TAGI---EVLHQAFAMVLPE-R------RSCSHQLEFLFNFN--VRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 922 ~~A~---~v~~~al~~~~~~-~------~~~~~~~E~L~~~~--a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
.++. +++......+... . ....+..-.||..+ |+...+ .+....+.+.+.+||.+-|....|+..
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~---~g~~~~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY---LGDYEKALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3222 1222222211110 0 01223345677655 443322 356788999999999999999999988
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCCCHHHH-HHHHHHHHHcCCCchHHHHHHHHHhcCCC
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKPSLVVS-LFALAFEMSRKGPPHRIRGLFERALANDT 1049 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~ps~~~w-lfaI~~E~~r~g~~~raRalFErAl~s~~ 1049 (1134)
-+.+-...|....|=..++.++.-...-..- --++..-+ |.|.+..|..++......+.
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L-Ra~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL-RAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH-HCCCHHHHHHHHHhhcCCCC
Confidence 8888888999999999999888765532211 12222222 44778888888888776543
No 155
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=76.28 E-value=1.6e+02 Score=34.23 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhCCCCHH-----HHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHH
Q 001167 968 TVWETTLHGLQIYPYSPK-----LFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLF 1041 (1134)
Q Consensus 968 ~~R~~l~~aL~~fP~N~~-----ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalF 1041 (1134)
++-+..++-...-|.... |+..+++-.......+++|..+.++...+| |+..=+.--..++.. |+...|-..+
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~-g~y~~AV~~~ 237 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK-GDYQKAVEAL 237 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc-cchHHHHHHH
Confidence 333444444444444432 333333333445678999999999998888 665555556667766 8999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1042 ERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1042 ErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
|+.++.+.---+..+=.+|.-+.. .|..+.....+.++++..+..-.+-|
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g~~~~l~ 287 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQ--LGKPAEGLNFLRRAMETNTGADAELM 287 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHccCCccHHHH
Confidence 999985443333444444444433 38889999999999999998765444
No 156
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.19 E-value=1.5e+02 Score=34.55 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001167 783 QDVLLCGVYARREAFFGNIDHARRVFDMALS 813 (1134)
Q Consensus 783 ~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs 813 (1134)
+++.||.+|.-+ ..|+++.|-.+|..+..
T Consensus 57 ~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 57 DSLQLWIAHCYF--HLGDYEEALNVYTFLMN 85 (557)
T ss_pred HHHHHHHHHHHH--hhccHHHHHHHHHHHhc
Confidence 578999998654 56999999999998865
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=76.03 E-value=81 Score=35.72 Aligned_cols=175 Identities=11% Similarity=-0.003 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCC
Q 001167 785 VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGST 864 (1134)
Q Consensus 785 l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~ 864 (1134)
...|..-|.+....|+...|-+.|..|-........ ......+...+++....|. ..+|-..+..++.-
T Consensus 55 ~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~---~~Ai~~~~~A~~~y~~~G~------~~~aA~~~~~lA~~-- 123 (282)
T PF14938_consen 55 AEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDP---DEAIECYEKAIEIYREAGR------FSQAAKCLKELAEI-- 123 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHCT-------HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCH---HHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHH--
Confidence 444455555555566666665655555544331100 0112234444444444432 33444444332110
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCc
Q 001167 865 YTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSH 944 (1134)
Q Consensus 865 ~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~ 944 (1134)
| .....+.-+|...|.++...... .+ ............|.+....+.++.|+++|++........... .+
T Consensus 124 y-----e~~~~d~e~Ai~~Y~~A~~~y~~---e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-~~ 193 (282)
T PF14938_consen 124 Y-----EEQLGDYEKAIEYYQKAAELYEQ---EG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-KY 193 (282)
T ss_dssp H-----CCTT--HHHHHHHHHHHHHHHHH---TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-GH
T ss_pred H-----HHHcCCHHHHHHHHHHHHHHHHH---CC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-ch
Confidence 0 00114567778888887654311 11 111122333456677777789999999999988754322111 11
Q ss_pred cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC
Q 001167 945 QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS 983 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N 983 (1134)
..-. +...+-+++.+ .+++..++..+++....+|.-
T Consensus 194 ~~~~-~~l~a~l~~L~--~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 194 SAKE-YFLKAILCHLA--MGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHH-HHHHHHHHHHH--TT-HHHHHHHHHHHGTTSTTS
T ss_pred hHHH-HHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 1111 11223333333 367778999999988887743
No 158
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.64 E-value=7.1 Score=28.52 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 786 LLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 786 ~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
..|...|.+.+..|+++.|++.|++|+...|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4688889999999999999999999999876
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.70 E-value=25 Score=39.93 Aligned_cols=143 Identities=11% Similarity=0.002 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001167 965 SLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFER 1043 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFEr 1043 (1134)
.+..+...+.+||.+-|+|.+|+.--++--.+++..+.|-.=.+.++..+| +...|.-.-..-..+ |....|...|.+
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~-gk~~~A~~aykK 174 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL-GKYEEAIEAYKK 174 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc-CcHHHHHHHHHh
Confidence 456788899999999999999997666666777887888777888888777 446664322222234 566666677999
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHHhcCCHH---HHHHHHHH--HHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVYIASNPF---AARRIFFR--AIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~~~~n~~---rAR~Vf~R--AL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
||. .-|++..+|...=.-|... +... .+..-|.. .+.+-|.+..+++ .+.|+..-|..+.+.|.-
T Consensus 175 aLe--ldP~Ne~~K~nL~~Ae~~l-~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~------~~l~nnp~l~~~~~~m~~ 244 (304)
T KOG0553|consen 175 ALE--LDPDNESYKSNLKIAEQKL-NEPKSSAQASGSFDMAGLIGAFPDSRSMFN------GDLMNNPQLMQLASQMMK 244 (304)
T ss_pred hhc--cCCCcHHHHHHHHHHHHHh-cCCCcccccccchhhhhhccCCccchhhhc------cccccCHHHHHHHHHHhh
Confidence 998 4466776665443333322 2111 11111221 2233366666654 233445556666555543
No 160
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.32 E-value=8.8 Score=28.15 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 786 LLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 786 ~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.+|...|.+....|+++.|.+.|++|+++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688899999999999999999999998875
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.83 E-value=77 Score=36.15 Aligned_cols=100 Identities=7% Similarity=-0.089 Sum_probs=62.1
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhC
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLY 997 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~ 997 (1134)
++++..|...|.+|+...++ .-.++..++..+++...+....+++.++.++|..-|.|.--+..+..-....
T Consensus 169 ~~~~~~A~~AY~~A~rL~g~--------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~ 240 (287)
T COG4235 169 LGRASDALLAYRNALRLAGD--------NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQ 240 (287)
T ss_pred hcchhHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 45677777778877776432 2345666677776655433445677777888888888765443222223345
Q ss_pred CChhHHHHHHHHHHhhCCCHHHHHHHHH
Q 001167 998 TTPNKLRWIFDLYCHKKPSLVVSLFALA 1025 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~ps~~~wlfaI~ 1025 (1134)
+....+....+......|.-..|.-.|.
T Consensus 241 g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 241 GDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred ccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 6677777777777776666566655543
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=69.70 E-value=81 Score=32.41 Aligned_cols=65 Identities=8% Similarity=-0.128 Sum_probs=37.1
Q ss_pred HHHHhhCCChhHHHHHHHHHHhhCCC----HHHHH-HHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHH
Q 001167 991 VEISNLYTTPNKLRWIFDLYCHKKPS----LVVSL-FALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRW 1059 (1134)
Q Consensus 991 ~~lE~~~~~~~raR~il~~~~~~~ps----~~~wl-faI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~ 1059 (1134)
+..-...+..+.+-..|.+++...+. ...|. .++.+ ... |....|...|++|+.. .+.....|..
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~-~~~-g~~~eA~~~~~~Al~~--~~~~~~~~~~ 111 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH-TSN-GEHTKALEYYFQALER--NPFLPQALNN 111 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-HHc-CCHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence 33334556777888888877655432 12332 22222 223 6788888889988873 3444444443
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.21 E-value=83 Score=35.53 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=35.8
Q ss_pred CCchHHHHHHHHHhcC-CCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1032 GPPHRIRGLFERALAN-DTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1032 g~~~raRalFErAl~s-~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
|+...|...|++++.. +..+..+..|..-....... |+.+.|+.+|.+.+..-|.+..
T Consensus 194 g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~-g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 194 GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK-GDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCHH
Confidence 6777777888888752 12233333333222222233 7888888888888888887764
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.92 E-value=82 Score=35.54 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhhCCChhHHHHHHHHHHhhCC----CHHHHHHHHHHHHHcCCCchH
Q 001167 964 LSLSTVWETTLHGLQIYPYSP---KLFNTLVEISNLYTTPNKLRWIFDLYCHKKP----SLVVSLFALAFEMSRKGPPHR 1036 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~---~ll~~~~~lE~~~~~~~raR~il~~~~~~~p----s~~~wlfaI~~E~~r~g~~~r 1036 (1134)
+....+...+..++..||++. ..+..+.+.....+..+.++..|.+++...| ....|+.....-... |....
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~-g~~~~ 235 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK-GDTAK 235 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc-CCHHH
Confidence 456778889999999999983 2222244444567889999999999998766 234443322222233 78999
Q ss_pred HHHHHHHHhc
Q 001167 1037 IRGLFERALA 1046 (1134)
Q Consensus 1037 aRalFErAl~ 1046 (1134)
|+.+|++.+.
T Consensus 236 A~~~~~~vi~ 245 (263)
T PRK10803 236 AKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 165
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=67.88 E-value=14 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred HHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1056 LWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1056 LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
.|...-...... |+++.|+..|.+|+..+|.+
T Consensus 3 ~~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQL-GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHCcCC
Confidence 444444444544 89999999999999999953
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=67.81 E-value=15 Score=33.27 Aligned_cols=79 Identities=8% Similarity=-0.035 Sum_probs=40.5
Q ss_pred CChhHHHHHHHHHHhhCC-C-H-HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 998 TTPNKLRWIFDLYCHKKP-S-L-VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~p-s-~-~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
+.++.|-.++++++...| + . ..|+....+-.. .|..++|-.++++ +. ..+.+.....++.+..... |+++.|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l-~~y~eA 77 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKL-GKYEEA 77 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHT-T-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHh-CCHHHH
Confidence 445566666666666555 2 2 223221222222 2566777777766 32 2233444444556655554 777777
Q ss_pred HHHHHHH
Q 001167 1075 RRIFFRA 1081 (1134)
Q Consensus 1075 R~Vf~RA 1081 (1134)
..+|.+|
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 7777665
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=65.07 E-value=1.2e+02 Score=32.51 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHhhCCChhHHHHHHHHHHhhCCCH--HHHHHHHHHHHHcCCCchHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKL---FNTLVEISNLYTTPNKLRWIFDLYCHKKPSL--VVSLFALAFEMSRKGPPHRIR 1038 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~l---l~~~~~lE~~~~~~~raR~il~~~~~~~ps~--~~wlfaI~~E~~r~g~~~raR 1038 (1134)
++...+...++..+..||.++.. +...+......+....+...+++.+...|.. ..+.
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A----------------- 81 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA----------------- 81 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH-----------------
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH-----------------
Confidence 45667777888888888887421 1112222334567777777777777766632 1111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhc
Q 001167 1039 GLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDK 1118 (1134)
Q Consensus 1039 alFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EK 1118 (1134)
+|-.|+. .-..|.-.+.+...+ +...+|...|...|..-|.|.-. .-. ...|..+-+.|.+|
T Consensus 82 -~Y~~g~~------~~~~~~~~~~~~~D~-~~~~~A~~~~~~li~~yP~S~y~--~~A--------~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 82 -LYMLGLS------YYKQIPGILRSDRDQ-TSTRKAIEEFEELIKRYPNSEYA--EEA--------KKRLAELRNRLAEH 143 (203)
T ss_dssp -HHHHHHH------HHHHHHHHH-TT----HHHHHHHHHHHHHHHH-TTSTTH--HHH--------HHHHHHHHHHHHHH
T ss_pred -HHHHHHH------HHHhCccchhcccCh-HHHHHHHHHHHHHHHHCcCchHH--HHH--------HHHHHHHHHHHHHH
Confidence 1111110 000011111233332 45677888888888888887732 222 13344555566666
Q ss_pred Ccc
Q 001167 1119 ELN 1121 (1134)
Q Consensus 1119 eLR 1121 (1134)
++.
T Consensus 144 e~~ 146 (203)
T PF13525_consen 144 ELY 146 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 168
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=64.99 E-value=45 Score=42.11 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHH--HHHHHHHHHcCCCchHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVS--LFALAFEMSRKGPPHRIRGL 1040 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~w--lfaI~~E~~r~g~~~raRal 1040 (1134)
+++..+-..++.++.++|--...|..+.-.--+.+.+..+-..|.+.+.-.| .-..| +-+.+. .. +...|++..
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi--~~-~~k~ra~~~ 575 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI--RL-KKKKRAFRK 575 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH--HH-hhhHHHHHH
Confidence 4567788889999999999887775544444455678888889999888777 56778 333333 22 677899999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh
Q 001167 1041 FERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus 1041 FErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~ 1084 (1134)
+-.|++. +..+..+|-.|+..-... |+++.|...+-|-+.-
T Consensus 576 l~EAlKc--n~~~w~iWENymlvsvdv-ge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 576 LKEALKC--NYQHWQIWENYMLVSVDV-GEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhc--CCCCCeeeechhhhhhhc-ccHHHHHHHHHHHHHh
Confidence 9999984 477899999999999986 9999988888777664
No 169
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.67 E-value=1.8e+02 Score=35.68 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=73.2
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHH-HHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEF-LFNFNVRMLQRHHK---QLSLSTVWETTLHGLQIYPYSPKLFNTLVEIS 994 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~-L~~~~a~ll~~~~~---~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE 994 (1134)
++-+.+++.+.++.+.- .-+++..-. |..+|.-+...... ..++..+.++|...+..||++..|+..-..++
T Consensus 202 gdR~~GL~~L~~~~~~~----~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSE----NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred CcHHHHHHHHHHHhccC----CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45666777777665421 011222222 23333333333322 23567899999999999999998877667788
Q ss_pred hhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHH-----HcCCCchHHHHHHHHHhc
Q 001167 995 NLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEM-----SRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 995 ~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~-----~r~g~~~raRalFErAl~ 1046 (1134)
...+..+.+-..|++++.......---....+|+ .. .+..+|-..|.+.++
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-HDWEEAAEYFLRLLK 333 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-chHHHHHHHHHHHHh
Confidence 8889999999999987743221100000111222 12 567788888888876
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=64.10 E-value=79 Score=36.18 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1034 PHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1034 ~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
.+.|--+|+.... .++.++.+.....-..+.+ |+++.|..++..|+..-|....
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHH
Confidence 4455555554322 3333444444333344432 4555555555555555554444
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=62.94 E-value=3.3e+02 Score=32.53 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=9.2
Q ss_pred cCChHHHHHHHHHHH
Q 001167 798 FGNIDHARRVFDMAL 812 (1134)
Q Consensus 798 ~Gn~e~ARkVf~tAL 812 (1134)
.|+++.||+-|+..+
T Consensus 133 eG~~~~Ar~kfeAMl 147 (531)
T COG3898 133 EGDYEDARKKFEAML 147 (531)
T ss_pred cCchHHHHHHHHHHh
Confidence 466666666666544
No 172
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=62.35 E-value=13 Score=37.21 Aligned_cols=52 Identities=19% Similarity=0.099 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.....|..+++.++..+|.+..+|....+.....|+...|.++|++......
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999876653
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=61.27 E-value=2e+02 Score=32.99 Aligned_cols=120 Identities=16% Similarity=0.024 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHH
Q 001167 965 SLSTVWETTLHGLQIYPYSPKLFN---TLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGL 1040 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP~N~~ll~---~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRal 1040 (1134)
.+..+++.+...-+....++ +.. .|+.+-........+--+|+....+.+ ++.+..-...+.+.. |....|..+
T Consensus 146 R~dlA~k~l~~~~~~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~ 223 (290)
T PF04733_consen 146 RPDLAEKELKNMQQIDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEEL 223 (290)
T ss_dssp -HHHHHHHHHHHHCCSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHH
Confidence 45567777776554444443 333 233333333467888899998877754 555554334455666 899999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHhHHHhcCCH-HHHHHHHHHHHHhCCCcH
Q 001167 1041 FERALANDTVRCSVVLWRWYIAYEVYIASNP-FAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1041 FErAl~s~~~~~s~~LWr~YI~fE~~~~~n~-~rAR~Vf~RAL~~CPwsK 1089 (1134)
++.|+. ..+..+......|-+.... |+. +.+.+.+...-...|.+.
T Consensus 224 L~~al~--~~~~~~d~LaNliv~~~~~-gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 224 LEEALE--KDPNDPDTLANLIVCSLHL-GKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHCC--C-CCHHHHHHHHHHHHHHT-T-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHH--hccCCHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHhCCCCh
Confidence 999998 5566788888877777765 654 667777777777766554
No 174
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.30 E-value=54 Score=32.77 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhh----CCCHHHHHHHHHH-HHHcC--CCchHHHHHHHHHhcCCCC-------CCCHHHHHHHHHh
Q 001167 1002 KLRWIFDLYCHK----KPSLVVSLFALAF-EMSRK--GPPHRIRGLFERALANDTV-------RCSVVLWRWYIAY 1063 (1134)
Q Consensus 1002 raR~il~~~~~~----~ps~~~wlfaI~~-E~~r~--g~~~raRalFErAl~s~~~-------~~s~~LWr~YI~f 1063 (1134)
..|..|+..+.. ..++.+|+-.|.+ |-..+ +.......++|+++..-.. +....+|..|+++
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~ 78 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN 78 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Confidence 345566655421 3366777666643 32222 2344566777777763111 2234577777764
No 175
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=59.06 E-value=17 Score=27.64 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001167 788 CGVYARREAFFGNIDHARRVFDMALSSI 815 (1134)
Q Consensus 788 W~aYA~lE~~~Gn~e~ARkVf~tALs~~ 815 (1134)
|...|.+....|+++.|..+|++||...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6778999999999999999999987544
No 176
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=58.18 E-value=28 Score=40.44 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhhcCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHH
Q 001167 727 FLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARR 806 (1134)
Q Consensus 727 ~v~~~l~~~~~~~~~~~~l~e~~l~~~~l~~~~~~~~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARk 806 (1134)
=|-++|..|+..........++..++..|. .++=.|+|+| .+|...|++|.+.|.++..-.
T Consensus 101 kvn~tlsECl~Li~eGcp~eei~~~L~~li--------~~IP~A~K~a-----------KYWIC~Arl~~~~~~~e~vi~ 161 (353)
T PF15297_consen 101 KVNKTLSECLNLIEEGCPKEEILATLSDLI--------KNIPDAKKLA-----------KYWICLARLEPRTGPIEDVIA 161 (353)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------hcCchHHHHH-----------HHHHHHHHHHhhcCCHHHHHH
Confidence 355666666655444444444443333331 1233566666 479999999999999999999
Q ss_pred HHHHHHHhcc
Q 001167 807 VFDMALSSIE 816 (1134)
Q Consensus 807 Vf~tALs~~~ 816 (1134)
||+.|+....
T Consensus 162 iyEeAi~agA 171 (353)
T PF15297_consen 162 IYEEAILAGA 171 (353)
T ss_pred HHHHHHHcCC
Confidence 9999998764
No 177
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.59 E-value=8.8e+02 Score=35.50 Aligned_cols=60 Identities=22% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 001167 783 QDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSC 858 (1134)
Q Consensus 783 ~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~ 858 (1134)
.--..|..+|++...+|.++.|..-.-.|-..- .+.+++.-|+.+|..|. ..+|+.+|..
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd------~~~Al~~Lq~ 1727 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGD------ELNALSVLQE 1727 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhcc------HHHHHHHHHH
Confidence 345789999999999999999988877775432 35789999999998864 4478888853
No 178
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=56.57 E-value=3.3e+02 Score=30.61 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
.++.-.++.+.-+.+..+..++... ++...+.+.. +++.. .+.++...+-..+.++...-|+|..+|..
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-------~~~d~~ll~~-~gk~~---~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-------YPKDRELLAA-QGKNQ---IRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-------CcccHHHHHH-HHHHH---HHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4456666666555555544433221 1223444433 33333 33456777888899999999999999987
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP---SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY 1066 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p---s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~ 1066 (1134)
..-.--+.|..+.+|.-|.++++-.+ ++..=+ ++..- -+ |+...|+.++.+|..++.. ...+=......-..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl-gms~~-L~-gd~~~A~~lll~a~l~~~a--d~~v~~NLAl~~~~ 214 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNL-GMSLL-LR-GDLEDAETLLLPAYLSPAA--DSRVRQNLALVVGL 214 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH-HHHHH-Hc-CCHHHHHHHHHHHHhCCCC--chHHHHHHHHHHhh
Confidence 77777788999999999999887644 222222 22221 24 7899999999999985432 22222222222222
Q ss_pred hcCCHHHHHHHH
Q 001167 1067 IASNPFAARRIF 1078 (1134)
Q Consensus 1067 ~~~n~~rAR~Vf 1078 (1134)
.|++..|+++-
T Consensus 215 -~g~~~~A~~i~ 225 (257)
T COG5010 215 -QGDFREAEDIA 225 (257)
T ss_pred -cCChHHHHhhc
Confidence 37888888764
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=56.49 E-value=19 Score=27.22 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhCCChhHHH
Q 001167 973 TLHGLQIYPYSPKLFNTLVEISNLYTTPNKLR 1004 (1134)
Q Consensus 973 l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR 1004 (1134)
+.++|+..|+|...|..+..+-...|..+.|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 57899999999999988888777777777664
No 180
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=53.47 E-value=1.9e+02 Score=28.81 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 001167 963 QLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYC 1011 (1134)
Q Consensus 963 ~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~ 1011 (1134)
.+....+...+.+++...|.|..++..++..-...|....|...|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567788899999999999999999988998888899899999988765
No 181
>PRK04841 transcriptional regulator MalT; Provisional
Probab=53.06 E-value=6.7e+02 Score=33.09 Aligned_cols=173 Identities=12% Similarity=0.049 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC-----H
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS-----P 984 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N-----~ 984 (1134)
..|...+..+.++.|...+++++...........+....++...+.+.+.. +.+..++..+.+++...... .
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW---ARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHhHHhhhccCchHHH
Confidence 445666778899999999999988643211101122223333444444332 56777888888887764421 1
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHhhCC---CHHHHHH---HHHHH-HHcCCCchHHHHHHHHHhcCCCCCC--CHH
Q 001167 985 KLFNTLVEISNLYTTPNKLRWIFDLYCHKKP---SLVVSLF---ALAFE-MSRKGPPHRIRGLFERALANDTVRC--SVV 1055 (1134)
Q Consensus 985 ~ll~~~~~lE~~~~~~~raR~il~~~~~~~p---s~~~wlf---aI~~E-~~r~g~~~raRalFErAl~s~~~~~--s~~ 1055 (1134)
..+.....+....+....++..++++..... ....|+. .+... ....|....++.+++.......... ...
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 1122233344567888889888887754211 1122211 11111 1123678889888887765321111 112
Q ss_pred HHHHHHHhHHHhcCCHHHHHHHHHHHHHhCC
Q 001167 1056 LWRWYIAYEVYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1056 LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
++....+..... |+.++|..+|.+|+..+.
T Consensus 693 ~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 693 QWRNIARAQILL-GQFDEAEIILEELNENAR 722 (903)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 234444445554 889999999999998764
No 182
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.00 E-value=1.6e+02 Score=31.50 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=49.1
Q ss_pred HHHHHHHHhhCCCChHHHHHHHhhhhhhcccccccchhhHHHHHHHHHHHHHHHhCCCChHHH----HHHHHHhhccCCH
Q 001167 264 TKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEELL----LSLMKAYQSRDGT 339 (1134)
Q Consensus 264 ~~eln~~v~e~P~Di~~Wl~li~~Qd~~~~~~~~k~~~~~~~E~KlsilekAL~~~p~~~~Ll----l~~l~~~~~~w~~ 339 (1134)
.+........||.|.+.+..----=.++..++ +-.....+.|--++-||.||..||+..+-+ ..|+..+.-.-+.
T Consensus 11 rk~aea~y~~nP~DadnL~~WG~ALLELAqfk-~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~ 89 (186)
T PF06552_consen 11 RKKAEAAYAKNPLDADNLTNWGGALLELAQFK-QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT 89 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh
Confidence 34556678899999997644321111111111 112344578889999999999999876522 3556655444443
Q ss_pred -------HHHHHHHHHHHHhCCCCHHHH
Q 001167 340 -------DVLIRRWEKILMQHSGSYKLW 360 (1134)
Q Consensus 340 -------~~l~~~W~~~l~~~p~~~~LW 360 (1134)
++-....++.+...|++-.-|
T Consensus 90 ~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 90 AEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 333445555666667664333
No 183
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.09 E-value=23 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 786 LLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 786 ~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
..|...|.+....|+++.|...|..++...|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3577888999999999999999999997655
No 184
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=48.15 E-value=5.7e+02 Score=30.83 Aligned_cols=101 Identities=9% Similarity=-0.041 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhC-CCHHHHHHH
Q 001167 945 QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKK-PSLVVSLFA 1023 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~-ps~~~wlfa 1023 (1134)
..+.|+...++++++.+ +...+-..++++....|.+-.-.-.|+-+-.+-+...+.-.+..+..... -....|+.+
T Consensus 230 ~NvhLl~~lak~~~~~G---dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNG---DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhc---CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 34566666666666554 23345556666666777664322233333223334455555555554443 244556554
Q ss_pred HHHHHHcCCCchHHHHHHHHHhcCCC
Q 001167 1024 LAFEMSRKGPPHRIRGLFERALANDT 1049 (1134)
Q Consensus 1024 I~~E~~r~g~~~raRalFErAl~s~~ 1049 (1134)
..+=..+ ....||-..-|++|..+.
T Consensus 307 ~~~l~~~-K~~~rAL~~~eK~I~~~~ 331 (564)
T KOG1174|consen 307 AQLLYDE-KKFERALNFVEKCIDSEP 331 (564)
T ss_pred hhhhhhh-hhHHHHHHHHHHHhccCc
Confidence 4332222 456777777888887543
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=47.44 E-value=3.3e+02 Score=27.86 Aligned_cols=76 Identities=9% Similarity=0.168 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+......+.++.|...|.+++...+. ++..-..|...+.+... .+....+...+.+++...|.+...+..
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~-----~~~~~~~~~~lg~~~~~---~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEID-----PYDRSYILYNIGLIHTS---NGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcccc-----chhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3344444557899999999999876321 11122244444443332 245678899999999999998765543
Q ss_pred HHHH
Q 001167 990 LVEI 993 (1134)
Q Consensus 990 ~~~l 993 (1134)
...+
T Consensus 112 la~i 115 (168)
T CHL00033 112 MAVI 115 (168)
T ss_pred HHHH
Confidence 3333
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=47.36 E-value=1.3e+02 Score=31.67 Aligned_cols=54 Identities=9% Similarity=-0.002 Sum_probs=49.7
Q ss_pred cCCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 763 SGCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 763 ~~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
...+.++|.++++-|.-.++.|...|...|-+.-..|+++.|-..|..|..+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 356689999999999999999999999999999999999999999999988765
No 187
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=45.02 E-value=8e+02 Score=31.64 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=79.2
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
.+++.|...|..+....+.+ +|.+-...+-++.. ....+++..+.+||+-.-.|..+|--|.-+....+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~-------~eaWnNls~ayi~~----~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDN-------AEAWNNLSTAYIRL----KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG 601 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCc-------hhhhhhhhHHHHHH----hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcc
Confidence 57889999999888865433 34443333333322 12356889999999988888899988888878888
Q ss_pred ChhHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHcCC------CchHHH-HHHHHHhcCCCCCCCHHHHHHHHH
Q 001167 999 TPNKLRWIFDLYCHK-----KPSLVVSLFALAFEMSRKG------PPHRIR-GLFERALANDTVRCSVVLWRWYIA 1062 (1134)
Q Consensus 999 ~~~raR~il~~~~~~-----~ps~~~wlfaI~~E~~r~g------~~~raR-alFErAl~s~~~~~s~~LWr~YI~ 1062 (1134)
.++.+-+.+.+...- .+.+..-+...-.|....+ ....-| .++-+-+. ..-.++..|++|++
T Consensus 602 e~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~--qv~~s~~~wrL~a~ 675 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLS--QVTNSPETWRLYAL 675 (777)
T ss_pred cHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHH--HHhCchhhhHhHhh
Confidence 999988888775432 3344333333323322111 111111 23333332 22237899999998
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.01 E-value=2e+02 Score=32.47 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPK 985 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ 985 (1134)
+++..+...+..+|+.||+++.
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~ 176 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTY 176 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcc
Confidence 4566788888999999999874
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=42.79 E-value=4.5e+02 Score=28.09 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChH--HHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 001167 791 YARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAP--LLYLWYAEVELSSNSGSDPDSSLRAIHVLS 857 (1134)
Q Consensus 791 YA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~--~lwl~yaemEl~~~~~~~~e~~~rAi~iL~ 857 (1134)
-|.-....|+++.|.+.|+..+...|..+ -.. .+++.++.+ ..++ ...|+..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----~a~~A~l~la~a~y--~~~~------y~~A~~~~~ 66 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSP-----YAPQAQLMLAYAYY--KQGD------YEEAIAAYE 66 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTST-----THHHHHHHHHHHHH--HTT-------HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHHHHH--HcCC------HHHHHHHHH
Confidence 46667789999999999999999887432 223 355555544 4432 556665543
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.29 E-value=2.7e+02 Score=31.97 Aligned_cols=117 Identities=9% Similarity=0.021 Sum_probs=74.7
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
+.+.+|+..|..||...+. -..+|-.+|..+-.. +....+.+-++.||.+-|+....|..+.-.-...+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~--------nAVyycNRAAAy~~L---g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPT--------NAVYYCNRAAAYSKL---GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred hhHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHh---cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 4699999999999997532 233444444333221 22446777889999999998887776665556677
Q ss_pred ChhHHHHHHHHHHhhCCCHHHH---HHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 999 TPNKLRWIFDLYCHKKPSLVVS---LFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~ps~~~w---lfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
....+-..|.+++.-.|.-..| |-.....+..+.+.......|+.+..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ 214 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGL 214 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhh
Confidence 7788877899999998855444 33333333222233444555665554
No 191
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=42.07 E-value=56 Score=23.85 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 786 LLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 786 ~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
..|..-|.+....|+++.|-.-|++||+..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4678888999999999999999999999876
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=42.00 E-value=2.9e+02 Score=28.35 Aligned_cols=66 Identities=17% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHhcCC---CCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHh
Q 001167 1031 KGPPHRIRGLFERALAND---TVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSK----RLWLDGFLKL 1099 (1134)
Q Consensus 1031 ~g~~~raRalFErAl~s~---~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK----~L~m~a~~~l 1099 (1134)
.|+...|+..||.-...- .....+.||..|..|. .++++.|...+.|-|+..|.+. .+||-|+..+
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 378899999998776521 1123478999999887 3789999999999999999775 5788887765
No 193
>PF12854 PPR_1: PPR repeat
Probab=41.67 E-value=45 Score=25.07 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001167 784 DVLLCGVYARREAFFGNIDHARRVFDM 810 (1134)
Q Consensus 784 nl~LW~aYA~lE~~~Gn~e~ARkVf~t 810 (1134)
|...|+....-..+.|+++.|.++|+.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 578899999999999999999999975
No 194
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=41.14 E-value=5.2e+02 Score=29.46 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=52.3
Q ss_pred hhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 001167 779 KSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSC 858 (1134)
Q Consensus 779 k~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~ 858 (1134)
.........|..+|++-.+.|+++.|...+..+....+... ...+.+.+.+|.+.+..|+ ...|+..|..
T Consensus 140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----~~~~~v~~e~akllw~~g~------~~~Ai~~L~~ 209 (352)
T PF02259_consen 140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----SLLPRVFLEYAKLLWAQGE------QEEAIQKLRE 209 (352)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc----CCCcchHHHHHHHHHHcCC------HHHHHHHHHH
Confidence 33556678999999999999999999999999877553210 1134688889999998764 4578877743
No 195
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=40.83 E-value=1e+03 Score=31.77 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 781 DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.|.+...|...+......|+++.|..+.+.+++..|
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P 62 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK 62 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 789999999999999999999999999999999887
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=40.78 E-value=5e+02 Score=28.09 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=80.1
Q ss_pred HHHHHHHHHH-HhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC---CHHHH-HHHHHHHHHcCCCchHHHHHHH
Q 001167 968 TVWETTLHGL-QIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP---SLVVS-LFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 968 ~~R~~l~~aL-~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p---s~~~w-lfaI~~E~~r~g~~~raRalFE 1042 (1134)
.++..+++++ ..|-..+.++...++-.-..+..-.+-..+++..+.+| +.... +|+--+ ..+|....+++.||
T Consensus 107 EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l--aa~g~~a~Aesafe 184 (251)
T COG4700 107 EAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL--AAQGKYADAESAFE 184 (251)
T ss_pred hhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH--HhcCCchhHHHHHH
Confidence 4777888877 47889988777776655455667778889999888877 34333 444332 23477888999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHhHHHhcCC----HHHHHHHHHHHHHhCC
Q 001167 1043 RALANDTVRCSVVLWRWYIAYEVYIASN----PFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~fE~~~~~n----~~rAR~Vf~RAL~~CP 1086 (1134)
-|+. +-.-+.-=+.|-.|...+ |. ..+++.|+.++.+.-|
T Consensus 185 ~a~~---~ypg~~ar~~Y~e~La~q-gr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 185 VAIS---YYPGPQARIYYAEMLAKQ-GRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred HHHH---hCCCHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhcch
Confidence 9997 322345566788898886 53 3456788998888776
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=40.32 E-value=1e+03 Score=31.47 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC--CHHHH-HHHHHHHHHcCC-------Cch
Q 001167 966 LSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP--SLVVS-LFALAFEMSRKG-------PPH 1035 (1134)
Q Consensus 966 l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p--s~~~w-lfaI~~E~~r~g-------~~~ 1035 (1134)
...+-.++++|++.||+ ..++..++.--.+-+.....+.+--+.-+..| .-..| +.+|.+--..+. -..
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 34455666666666666 43333333332333333333333333333333 23444 334433221110 112
Q ss_pred HHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH--HHHHHhhhccChHHHHHHH
Q 001167 1036 RIRGLFERALAND-TVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL--DGFLKLNSILTAKELSDLQ 1112 (1134)
Q Consensus 1036 raRalFErAl~s~-~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m--~a~~~l~~~~~~~EL~~l~ 1112 (1134)
=|+.+++.-+.-. ....+..+-..+.-.+. + +..+.|-.++..-+.+-=-+...++ -.+..+..-..++|+.++.
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~-~-~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILEL-Q-GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHh-c-ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 3344444444433 22334444433333333 2 6677777766544443222222233 3333444455677777777
Q ss_pred HHhhhcCcc---cccc-hHHhhh
Q 001167 1113 EVMRDKELN---LRTD-IYEILL 1131 (1134)
Q Consensus 1113 dvM~EKeLR---ir~d-leE~ll 1131 (1134)
--+.+|+.- +.+| ++++|+
T Consensus 250 ~~Ll~k~~Ddy~~~~~sv~klLe 272 (932)
T KOG2053|consen 250 SRLLEKGNDDYKIYTDSVFKLLE 272 (932)
T ss_pred HHHHHhCCcchHHHHHHHHHHHH
Confidence 777777754 4444 344443
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=39.77 E-value=1.9e+02 Score=25.27 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhC
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIY 980 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~f 980 (1134)
..|...+..+.++.|+..|++++.... . ....+..+-..+..+=..+...+....+.+.+.++++.+
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~~-~---~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIEE-Q---LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHH-H---TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH-H---HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344555567899999999999998731 1 111232222222222222222345677778888887654
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.44 E-value=3.7e+02 Score=30.43 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=66.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSP---KLFN 988 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~---~ll~ 988 (1134)
|+=.|+.+.+..|...|...+...+.... ......|+--+ .|. +++...+-.++...++.||.++ .-+.
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~--~y~---qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGES--LYA---QGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHH--HHh---cccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 45566778899999999988887764411 12234444333 222 2456667778888999999884 3333
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHhhCCC
Q 001167 989 TLVEISNLYTTPNKLRWIFDLYCHKKPS 1016 (1134)
Q Consensus 989 ~~~~lE~~~~~~~raR~il~~~~~~~ps 1016 (1134)
.+.....+.+..+.||.+|+..+..-|.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 4566667888999999999999988773
No 200
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.48 E-value=47 Score=37.86 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=50.5
Q ss_pred HHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 001167 1027 EMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1027 E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
++.+.|..++|..+||.|+. -.+.++.+-.-|-.|--.. .++-.|-.+|.+||...|.+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCch
Confidence 45566899999999999998 5677888888888886654 788899999999999999754
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=37.92 E-value=4.2e+02 Score=27.19 Aligned_cols=61 Identities=10% Similarity=-0.068 Sum_probs=40.6
Q ss_pred HhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH
Q 001167 917 LTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK 985 (1134)
Q Consensus 917 Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ 985 (1134)
-.++++.|.+.|+......+-.. -..--.|++.++.+. ......+...+.+.|+++|+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~-----~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYK-----QGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCCC
Confidence 34678999999997776654221 012234555454332 35677899999999999999963
No 202
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=37.14 E-value=6.5e+02 Score=28.34 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=79.5
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQ-LSLSTVWETTLHGLQIYPYS------PKLFNTLV 991 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~-~~l~~~R~~l~~aL~~fP~N------~~ll~~~~ 991 (1134)
.+++.|+..|++|+..+... +.....-.++...+.++. .. +.+..+.+.+.+|+..|-.+ ...+...+
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye---~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYE---EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHC---CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 47888999999998875321 011122344444444442 23 46778889999998887433 13344456
Q ss_pred HHHhhCCChhHHHHHHHHHHhhCC-------CHH-HHHHHHHHHHHcCCCchHHHHHHHHHhcCCC-CCCCHHHHHH
Q 001167 992 EISNLYTTPNKLRWIFDLYCHKKP-------SLV-VSLFALAFEMSRKGPPHRIRGLFERALANDT-VRCSVVLWRW 1059 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~~p-------s~~-~wlfaI~~E~~r~g~~~raRalFErAl~s~~-~~~s~~LWr~ 1059 (1134)
.+..+.+..+.+-.+|++....+- ++. .++.++-+-+.. |+...|+..|++....++ ..++..--.+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~-~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM-GDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 666677888888888888765432 222 345566565555 678888888888876432 2344444433
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=36.35 E-value=4.4e+02 Score=26.09 Aligned_cols=83 Identities=12% Similarity=-0.003 Sum_probs=52.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 001167 913 LFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY---SPKLFNT 989 (1134)
Q Consensus 913 lfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~---N~~ll~~ 989 (1134)
...-..+..+.|+.+|++++..-+.. ......++..+.-++.- +.+..+..+|++++..||. +..+...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~-----~~~~~a~i~lastlr~L---G~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSG-----ADRRRALIQLASTLRNL---GRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc-----hHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 33444578999999999999853322 23455666666555433 4678889999999999999 6655432
Q ss_pred HHHHHhhCCChhHH
Q 001167 990 LVEISNLYTTPNKL 1003 (1134)
Q Consensus 990 ~~~lE~~~~~~~ra 1003 (1134)
+.-.-...+..+.+
T Consensus 81 ~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 81 LALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHCCCHHHH
Confidence 22222333444443
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=36.18 E-value=4.4e+02 Score=26.09 Aligned_cols=53 Identities=21% Similarity=0.060 Sum_probs=27.7
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHH---hHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIA---YEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~---fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
|...+|..+|++|+.. +......=+++|. .... .|+++.|..+|..++..-|.
T Consensus 15 G~~~~Ai~~Y~~Al~~--gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 15 GREEEAIPLYRRALAA--GLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPD 70 (120)
T ss_pred CCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCC
Confidence 5566666666666652 2222222233333 2222 26666666677666666554
No 205
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=35.70 E-value=6.9e+02 Score=28.19 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHH-HHHHHHHHHcCCCchHHHHHHHHHhcCCC
Q 001167 972 TTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVS-LFALAFEMSRKGPPHRIRGLFERALANDT 1049 (1134)
Q Consensus 972 ~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~w-lfaI~~E~~r~g~~~raRalFErAl~s~~ 1049 (1134)
.+..++..+|....++..++..--+.+....+-..|.++....| ....| ..++.+. .. |...-||..|-.|++-..
T Consensus 88 ~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~-Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 88 VLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QL-GRFDEARRAYRQALELAP 165 (257)
T ss_pred HHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-Hc-cChhHHHHHHHHHHHhcc
Confidence 34556667899988887777777788999999999999888766 55777 4555553 23 788999999999997433
Q ss_pred CCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1050 VRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1050 ~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
... ..+=.+-+-+.+ .|+++.|+.++.+|...-|-.+.+-
T Consensus 166 ~~p-~~~nNlgms~~L--~gd~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 166 NEP-SIANNLGMSLLL--RGDLEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCc-hhhhhHHHHHHH--cCCHHHHHHHHHHHHhCCCCchHHH
Confidence 211 111122222223 3999999999999999877666543
No 206
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=35.57 E-value=1.2e+03 Score=30.81 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001167 906 ALICSAALFEELTNGWTAGIEVLHQAFAMV 935 (1134)
Q Consensus 906 ~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~ 935 (1134)
.++.-|+.+.+-.+..++|+.+|+.|-+-+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 344445666666788999999999886654
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=35.43 E-value=46 Score=29.29 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 785 VLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 785 l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
...+...|.+....|+++.|...|++|+.+..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 36 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEE 36 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999998843
No 208
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.47 E-value=4.8e+02 Score=31.18 Aligned_cols=102 Identities=11% Similarity=-0.008 Sum_probs=53.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcCccccCCcc----H-HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHH
Q 001167 913 LFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQ----L-EFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLF 987 (1134)
Q Consensus 913 lfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~----~-E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll 987 (1134)
...|--+.+..|..-|++|++.+.-.+ ..... . +.....+..+--.+.+......+-....++|..=|+|.+=|
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~-~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRR-SFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccc-cCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 444555678888888998888764221 00010 0 11111111111112222234566677788888888887644
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHhhCC
Q 001167 988 NTLVEISNLYTTPNKLRWIFDLYCHKKP 1015 (1134)
Q Consensus 988 ~~~~~lE~~~~~~~raR~il~~~~~~~p 1015 (1134)
-.-.+.-...+..+-||..|.+++...|
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 2233333344556666666666665555
No 209
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=32.26 E-value=2.8e+02 Score=25.93 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCChHHHHHHHhhhhhhcccccccchhhHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHhhccCCHHH
Q 001167 264 TKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPD--NEELLLSLMKAYQSRDGTDV 341 (1134)
Q Consensus 264 ~~eln~~v~e~P~Di~~Wl~li~~Qd~~~~~~~~k~~~~~~~E~KlsilekAL~~~p~--~~~Lll~~l~~~~~~w~~~~ 341 (1134)
...|.+.+..+|.|+++.+.+....-. .+ -.|.-+..|-..++.+++ +..-.-.+++....+-+.+-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~-------~g----~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLA-------AG----DYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHH-------TT-----HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH-------CC----CHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 567888999999999999999875311 01 124456677777777764 46666677776666666666
Q ss_pred HHHHHHHHHH
Q 001167 342 LIRRWEKILM 351 (1134)
Q Consensus 342 l~~~W~~~l~ 351 (1134)
+..++++-|.
T Consensus 77 lv~~~RRkL~ 86 (90)
T PF14561_consen 77 LVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776553
No 210
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=31.65 E-value=28 Score=42.79 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=7.4
Q ss_pred HHHHHHhHHhhhhc
Q 001167 96 RQRKKKDKKKKRKR 109 (1134)
Q Consensus 96 ~~~~~~~~~~~~~~ 109 (1134)
.+.++++|||||+|
T Consensus 720 ~k~~~~~rhrkRhr 733 (878)
T KOG1847|consen 720 DKYHSRSRHRKRHR 733 (878)
T ss_pred hhhhhhHhHhhhhc
Confidence 33555555555554
No 211
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=31.26 E-value=1.2e+02 Score=22.08 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 001167 1069 SNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPw 1087 (1134)
|+++.|...|.+||+.+|.
T Consensus 15 ~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 15 GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp T-HHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHCcC
Confidence 8999999999999999985
No 212
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=30.95 E-value=96 Score=22.04 Aligned_cols=20 Identities=30% Similarity=0.180 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHhCCCc
Q 001167 1069 SNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPws 1088 (1134)
|+.+.|..+|.+.+...|.|
T Consensus 14 g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTTS
T ss_pred cCHHHHHHHHHHHHHHCcCC
Confidence 88999999999999999965
No 213
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.85 E-value=84 Score=35.93 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=50.3
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGL 818 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~ 818 (1134)
..+-..|.+++...|+-.|.+...-.+|+.+-..+.++-.|.+.|-+||+..|..
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 4456778899999999999999999999999999999999999999999999864
No 214
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=29.86 E-value=73 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=21.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 791 YARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 791 YA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.|.+....|+++.|.++|++.+...|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45555668999999999999998776
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.96 E-value=1.3e+03 Score=29.23 Aligned_cols=82 Identities=18% Similarity=0.111 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhCC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcC-----CCCCCCHHHHHHHHHhHHHhcCCHHH
Q 001167 1001 NKLRWIFDLYCHKKP--SLVVSLFALAFEMSRKGPPHRIRGLFERALAN-----DTVRCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 1001 ~raR~il~~~~~~~p--s~~~wlfaI~~E~~r~g~~~raRalFErAl~s-----~~~~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
-++-.++.......| +..+-+.-+++-+.. |+.+-|..+++..+.+ ....+++.+ ..||.++....++...
T Consensus 358 ~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~-gn~~~A~~il~~~~~~~~ss~~~~~~~P~~-V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 358 KKAIELLLQFADGHPEKSKVVLLLRAQLKISQ-GNPEVALEILSLFLESWKSSILEAKHLPGT-VGAIVALYYKIKDNDS 435 (652)
T ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhhhhhhhhhccChhH-HHHHHHHHHhccCCcc
Confidence 344455555555666 344555556665655 8999998888844421 123444444 4566666554567778
Q ss_pred HHHHHHHHHHh
Q 001167 1074 ARRIFFRAIHA 1084 (1134)
Q Consensus 1074 AR~Vf~RAL~~ 1084 (1134)
|..||..|++-
T Consensus 436 a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 436 ASAVLDSAIKW 446 (652)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=28.67 E-value=2.3e+02 Score=34.39 Aligned_cols=48 Identities=15% Similarity=-0.041 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHhhhcCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001167 766 SVTPCQPLAKGLLKSDRQDVL---LCGVYARREAFFGNIDHARRVFDMALS 813 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~---LW~aYA~lE~~~Gn~e~ARkVf~tALs 813 (1134)
....|-..+++.|..+|++.. .|..-|.+....|+++.|...|.+|+.
T Consensus 90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555542 244445555555555555555555554
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=1.2e+03 Score=28.39 Aligned_cols=266 Identities=13% Similarity=0.024 Sum_probs=121.9
Q ss_pred ChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHH---hcCCCCC
Q 001167 769 PCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVEL---SSNSGSD 845 (1134)
Q Consensus 769 ~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl---~~~~~~~ 845 (1134)
+|-+..-..++..|.+...|.-=|......|+++.|-.=....+...++++.. +......+..-..+.. ...+...
T Consensus 67 nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~-~~r~~~c~~a~~~~i~A~~~~~~~~~ 145 (486)
T KOG0550|consen 67 NALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKG-QLREGQCHLALSDLIEAEEKLKSKQA 145 (486)
T ss_pred HHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcccc-ccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 34445555667788888888888888888888888877777777776655432 1111222222221111 1111000
Q ss_pred CchHHHHHHHHHhcCCCCCCCCccC-CC--ChhHHHHHHHH-----HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 001167 846 PDSSLRAIHVLSCLGSGSTYTPFKC-QP--SNVQVLRAHQG-----YMERIKAVRSAWLRGAVSDQSIALICSAALFEEL 917 (1134)
Q Consensus 846 ~e~~~rAi~iL~~l~~~~~~~~~~~-~~--s~~~ILkAr~~-----~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~L 917 (1134)
. ....|+..+..+ .+..+ ++ ....+|||.-. |.++++.-...+..... +. ..+....+..|-
T Consensus 146 ~-~~anal~~~~~~------~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~--~al~vrg~~~yy 215 (486)
T KOG0550|consen 146 Y-KAANALPTLEKL------APSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NA--EALYVRGLCLYY 215 (486)
T ss_pred h-HHhhhhhhhhcc------cccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hh--HHHHhccccccc
Confidence 0 011222222221 11111 11 12334444421 11222111000110000 11 111123344555
Q ss_pred hcCHHHHHHHHHHHHHhhcCcccc--CCccHHH--HHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHH-HHHH
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRS--CSHQLEF--LFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFN-TLVE 992 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~--~~~~~E~--L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~-~~~~ 992 (1134)
+.+.+.|..-|++++.+-+.+... .+...-. .|-......+ +.+.++.+-+.+.+||.+-|+|..-.. .|..
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f---k~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF---KNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh---hccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 678899999999998865433110 0111111 1222222222 234577899999999999999975432 2222
Q ss_pred HHhhCCChhHHHHHHHHH---HhhCCCHHHH--HHHHHHHHHcCCCchHHHHHHHHHhcCCCC
Q 001167 993 ISNLYTTPNKLRWIFDLY---CHKKPSLVVS--LFALAFEMSRKGPPHRIRGLFERALANDTV 1050 (1134)
Q Consensus 993 lE~~~~~~~raR~il~~~---~~~~ps~~~w--lfaI~~E~~r~g~~~raRalFErAl~s~~~ 1050 (1134)
.-.-.....|.|.-+... ...+ +..+| +....+-+.. +....+..-|+.|+++...
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~l-e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLAL-EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccc
Confidence 222222234444444432 2222 22222 2222222222 4566777888888875443
No 218
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=27.21 E-value=1.3e+02 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 786 LLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 786 ~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
..++..|.+....|+++.|..+++.|+....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3466778888999999999999999998764
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=27.11 E-value=4.5e+02 Score=27.66 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+.+..+..++.--.-.-|.|+.+|..++......+....|-..|..+..-.+ +..+...+..+-+.. ++...|+..|+
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l-~~~~~A~~~f~ 129 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM-RKAAKARQCFE 129 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh-CCHHHHHHHHH
Confidence 3455555555444445577777776666655555555555555554432211 222222233333333 45555555555
Q ss_pred HHhc
Q 001167 1043 RALA 1046 (1134)
Q Consensus 1043 rAl~ 1046 (1134)
.++.
T Consensus 130 ~a~~ 133 (165)
T PRK15331 130 LVNE 133 (165)
T ss_pred HHHh
Confidence 5554
No 220
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.55 E-value=2.4e+03 Score=31.57 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccc---cCCccHH------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhC
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERR---SCSHQLE------FLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIY 980 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~---~~~~~~E------~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~f 980 (1134)
-.|.+.+-+++-..|+.+++..++...++.. +..|..- +.....++++..-+ +.....+-..+..++...
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~-n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESG-NFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHc
Confidence 4678888889999999999999976544311 1112211 12222223222222 123456777888899888
Q ss_pred CC
Q 001167 981 PY 982 (1134)
Q Consensus 981 P~ 982 (1134)
|.
T Consensus 1786 ~e 1787 (2382)
T KOG0890|consen 1786 PE 1787 (2382)
T ss_pred cc
Confidence 84
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=24.31 E-value=1.3e+02 Score=22.76 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 001167 425 FLSLCRLEWQAGYQELATALFQAEIEFS 452 (1134)
Q Consensus 425 f~r~~~fl~qaG~~E~Ava~~QA~lE~n 452 (1134)
+.+++....+.|..++|+.++|-.|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3567778889999999999999988765
No 222
>PF13041 PPR_2: PPR repeat family
Probab=24.23 E-value=1.4e+02 Score=24.11 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001167 784 DVLLCGVYARREAFFGNIDHARRVFDMALSS 814 (1134)
Q Consensus 784 nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~ 814 (1134)
|+..|+.......++|+++.|.++|+...+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4678999999999999999999999998764
No 223
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=23.56 E-value=6.3e+02 Score=29.71 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-cccccccch------
Q 001167 304 ILEKKISILEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQHSGSYKLWREFLRVV-QGEFSRFKV------ 376 (1134)
Q Consensus 304 ~~E~KlsilekAL~~~p~~~~Lll~~l~~~~~~w~~~~l~~~W~~~l~~~p~~~~LW~~yL~~~-q~~~~~F~~------ 376 (1134)
.+-+-+.|||.+|+..|.|-.+.+.+++.+..+.-.+....-|..+=-+|-..-+| .|+-+. -..+..+..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL--~h~~~~r~~~~~~~~~~~~~~~ 275 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTL--GHLILDRLSTLGPFKSAPENLL 275 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHh--HHHHHHHHhccCcccccchHHH
Confidence 34568899999999999999999999999999988888888998887777666666 444442 222333333
Q ss_pred hHHHHHHHHHHHHHHH
Q 001167 377 SELRKMYAHAIQALSA 392 (1134)
Q Consensus 377 ~~~~~~y~~~l~~l~~ 392 (1134)
..+.+.|..+.+.+..
T Consensus 276 ~~~~~fy~~~~~~~~e 291 (365)
T PF09797_consen 276 ENALKFYDNSEKETPE 291 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3356666655554443
No 224
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.18 E-value=40 Score=41.46 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=30.9
Q ss_pred HhhCCCChHHHHHHHhhhhhhcccccccchhhHHHHHHHHHHHHHHHh
Q 001167 271 TREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVEL 318 (1134)
Q Consensus 271 v~e~P~Di~~Wl~li~~Qd~~~~~~~~k~~~~~~~E~KlsilekAL~~ 318 (1134)
+..+|--|++-|.++.. +.++..........|+-|-.+++|+..
T Consensus 277 L~ssPYHvdsLLqva~~----~r~qgD~e~aadLieR~Ly~~d~a~hp 320 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADI----FRFQGDREMAADLIERGLYVFDRALHP 320 (665)
T ss_pred eccCCcchhHHHHHHHH----HHHhcchhhHHHHHHHHHHHHHHHhcc
Confidence 56678888888887664 333333333445789999999999984
No 225
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=21.83 E-value=1.9e+02 Score=20.85 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 001167 424 IFLSLCRLEWQAGYQELATALFQAEIEFS 452 (1134)
Q Consensus 424 if~r~~~fl~qaG~~E~Ava~~QA~lE~n 452 (1134)
++..++....+.|..+.|+..|+-.++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45667778889999999999999999987
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=21.11 E-value=6.8e+02 Score=30.56 Aligned_cols=89 Identities=16% Similarity=0.050 Sum_probs=55.0
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHH---HHHHHHHhHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHhhhccChHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVV---LWRWYIAYEVYIASNPFAARRIFFRAIHA-CPWSKRLWLDGFLKLNSILTAKE 1107 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~---LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~-CPwsK~L~m~a~~~l~~~~~~~E 1107 (1134)
|....|.+.|++||. ..+.+.. .|..-.-+...+ |+++.|...|.+||.. .|.-+ +|..-..|...-...+
T Consensus 89 GryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALelsn~~f~--~i~~DpdL~plR~~pe 163 (453)
T PLN03098 89 GRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRDYNLKFS--TILNDPDLAPFRASPE 163 (453)
T ss_pred CCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcchhHH--HHHhCcchhhhcccHH
Confidence 788899999999998 4455553 354444444444 8999999999999986 33111 1110001111123467
Q ss_pred HHHHHHHhhhcCcccccc
Q 001167 1108 LSDLQEVMRDKELNLRTD 1125 (1134)
Q Consensus 1108 L~~l~dvM~EKeLRir~d 1125 (1134)
..++++-+..=|.++-..
T Consensus 164 f~eLlee~rk~G~~~g~~ 181 (453)
T PLN03098 164 FKELQEEARKGGEDIGSS 181 (453)
T ss_pred HHHHHHHHHHhCCccCCc
Confidence 888888888888755443
No 227
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=20.62 E-value=1e+02 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.036 Sum_probs=22.3
Q ss_pred HHHhcCCc---HHHHHHHHHHHHhhccCCcc
Q 001167 431 LEWQAGYQ---ELATALFQAEIEFSLFCPSL 458 (1134)
Q Consensus 431 fl~qaG~~---E~Ava~~QA~lE~n~f~P~~ 458 (1134)
||.+.|.. +.|+++.|++|+-.++.|-.
T Consensus 37 WL~~~~~~~~r~eAv~lg~~Ll~~G~i~HV~ 67 (81)
T cd04439 37 WLLEIGEISKPEEGVNLGQALLENGIIHHVS 67 (81)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCEEecC
Confidence 45555544 78999999999999998864
No 228
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.14 E-value=4.7e+02 Score=32.09 Aligned_cols=138 Identities=19% Similarity=0.197 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHhhCCChhHHHHHHHHH-HhhCC---------CHHHH--HHHHHHHHHcCCCchHHHHHHHHHhcC--
Q 001167 982 YSPKLFNTLVEISNLYTTPNKLRWIFDLY-CHKKP---------SLVVS--LFALAFEMSRKGPPHRIRGLFERALAN-- 1047 (1134)
Q Consensus 982 ~N~~ll~~~~~lE~~~~~~~raR~il~~~-~~~~p---------s~~~w--lfaI~~E~~r~g~~~raRalFErAl~s-- 1047 (1134)
+++..+.+-.++|.-.++..++-.++-.. +...+ +-..| +--|++.+ +-.+-.--+|-+|+.+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~---~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL---GCYQASSVLFLKALRNSC 314 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh---hhHHHHHHHHHHHHHHHH
Confidence 44433334566776667766665555432 22221 11222 11233322 2344445566666631
Q ss_pred ---------------CCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHH
Q 001167 1048 ---------------DTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQ 1112 (1134)
Q Consensus 1048 ---------------~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~ 1112 (1134)
..++++.+|+.+-|.+... |.+-.|-++|..|++..--++.||+--..----..-..=+.+--
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~--grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~ 392 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS--GRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGN 392 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhc--CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 1246788999998888774 88899999999999999999999986554200000001112222
Q ss_pred HHhhhcCccccc
Q 001167 1113 EVMRDKELNLRT 1124 (1134)
Q Consensus 1113 dvM~EKeLRir~ 1124 (1134)
...-+||||+||
T Consensus 393 ~s~s~~~i~~~v 404 (696)
T KOG2471|consen 393 SSLSRSEIRVHV 404 (696)
T ss_pred CCcccccceeee
Confidence 345577888875
No 229
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=20.02 E-value=3e+02 Score=22.66 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHHHHhCCCChHHHHHHHHHhhccCCHHHHHHHHHHHHHhC
Q 001167 312 LEKAVELNPDNEELLLSLMKAYQSRDGTDVLIRRWEKILMQH 353 (1134)
Q Consensus 312 lekAL~~~p~~~~Lll~~l~~~~~~w~~~~l~~~W~~~l~~~ 353 (1134)
+.-++-.||.=++|+-.||. |.++--+.++..+.+++...+
T Consensus 3 iKA~I~~HP~Y~~Ll~Ayi~-C~KVGAP~e~~~~L~e~~~~~ 43 (45)
T PF03790_consen 3 IKAKIASHPLYPRLLAAYID-CQKVGAPPEVVARLDEILAES 43 (45)
T ss_pred HHHHHHcCCCcHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHh
Confidence 45567789999999999996 889998888888888887654
Done!