Query 001167
Match_columns 1134
No_of_seqs 256 out of 813
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 99.9 1E-19 3.6E-24 225.9 44.7 245 770-1091 328-577 (679)
2 4e6h_A MRNA 3'-END-processing 99.8 3.3E-17 1.1E-21 203.6 34.0 355 725-1118 119-570 (679)
3 2uy1_A Cleavage stimulation fa 99.8 1.5E-16 5.1E-21 191.5 35.9 328 725-1117 30-412 (493)
4 2ooe_A Cleavage stimulation fa 99.7 3.4E-15 1.2E-19 180.1 35.4 356 724-1117 61-491 (530)
5 2uy1_A Cleavage stimulation fa 99.7 5.4E-15 1.8E-19 177.9 32.9 292 767-1115 30-380 (493)
6 2ond_A Cleavage stimulation fa 99.7 1.2E-14 4.1E-19 162.9 26.3 260 781-1089 4-275 (308)
7 2ooe_A Cleavage stimulation fa 99.6 8.1E-14 2.8E-18 168.0 34.5 331 765-1118 26-454 (530)
8 2ond_A Cleavage stimulation fa 99.4 1.9E-11 6.6E-16 136.8 27.9 217 879-1118 34-270 (308)
9 4h7y_A Dual specificity protei 99.3 2.7E-11 9.4E-16 119.7 13.3 117 979-1100 8-139 (161)
10 1w3b_A UDP-N-acetylglucosamine 99.2 3.2E-08 1.1E-12 113.1 35.3 290 766-1094 48-344 (388)
11 2y4t_A DNAJ homolog subfamily 99.2 9.8E-09 3.4E-13 119.1 30.3 290 764-1092 39-366 (450)
12 3ieg_A DNAJ homolog subfamily 99.2 7.5E-08 2.6E-12 106.9 35.8 291 764-1093 16-344 (359)
13 1w3b_A UDP-N-acetylglucosamine 99.1 2.7E-08 9.3E-13 113.6 32.4 292 766-1096 14-312 (388)
14 3hym_B Cell division cycle pro 99.1 3.7E-08 1.3E-12 108.4 29.4 267 765-1097 36-312 (330)
15 3fp2_A TPR repeat-containing p 99.1 2E-07 6.8E-12 110.6 36.2 294 764-1088 38-411 (537)
16 2xpi_A Anaphase-promoting comp 99.1 8.8E-08 3E-12 115.6 33.3 263 765-1094 319-589 (597)
17 2y4t_A DNAJ homolog subfamily 99.0 4.5E-07 1.5E-11 105.0 34.3 261 768-1092 9-294 (450)
18 2xpi_A Anaphase-promoting comp 98.9 3E-07 1E-11 110.8 31.3 283 769-1117 290-578 (597)
19 2gw1_A Mitochondrial precursor 98.9 8.7E-07 3E-11 104.1 32.4 168 906-1089 238-406 (514)
20 3ieg_A DNAJ homolog subfamily 98.9 3.6E-06 1.2E-10 93.3 35.6 248 784-1095 2-274 (359)
21 4eqf_A PEX5-related protein; a 98.9 2.9E-07 1E-11 103.9 26.5 246 784-1088 64-314 (365)
22 3cv0_A Peroxisome targeting si 98.9 1.2E-07 4.3E-12 104.0 21.6 269 765-1086 35-317 (327)
23 1fch_A Peroxisomal targeting s 98.8 3.4E-07 1.2E-11 102.8 25.4 271 765-1084 78-359 (368)
24 4eqf_A PEX5-related protein; a 98.8 4.1E-07 1.4E-11 102.7 25.7 265 766-1084 80-356 (365)
25 3hym_B Cell division cycle pro 98.8 1.2E-06 4.2E-11 96.2 27.0 254 776-1094 13-275 (330)
26 1fch_A Peroxisomal targeting s 98.7 4.8E-06 1.7E-10 93.4 29.2 256 773-1088 48-318 (368)
27 2gw1_A Mitochondrial precursor 98.7 8.6E-07 3E-11 104.1 23.9 244 782-1093 234-487 (514)
28 3cv0_A Peroxisome targeting si 98.7 1E-05 3.5E-10 88.6 29.3 246 784-1087 20-272 (327)
29 3fp2_A TPR repeat-containing p 98.7 2.6E-06 8.8E-11 100.9 25.6 257 768-1091 219-498 (537)
30 3uq3_A Heat shock protein STI1 98.6 3.7E-05 1.3E-09 81.0 28.7 240 785-1093 5-251 (258)
31 3u4t_A TPR repeat-containing p 98.5 1.1E-05 3.8E-10 86.4 24.7 246 785-1092 3-258 (272)
32 2ho1_A Type 4 fimbrial biogene 98.5 2.6E-05 9E-10 82.6 26.2 214 781-1092 32-246 (252)
33 2vq2_A PILW, putative fimbrial 98.5 5.1E-05 1.8E-09 78.1 26.9 195 908-1117 11-210 (225)
34 4h7y_A Dual specificity protei 98.5 2.4E-06 8.2E-11 84.7 15.1 80 902-993 58-137 (161)
35 2vq2_A PILW, putative fimbrial 98.5 5.8E-05 2E-09 77.7 26.3 215 780-1092 3-219 (225)
36 2h6f_A Protein farnesyltransfe 98.4 3.9E-05 1.3E-09 89.0 25.3 171 919-1103 180-367 (382)
37 3ro2_A PINS homolog, G-protein 98.4 2.1E-05 7.1E-10 85.7 21.6 278 764-1088 18-336 (338)
38 2ho1_A Type 4 fimbrial biogene 98.3 8.6E-05 2.9E-09 78.6 24.8 195 908-1117 40-237 (252)
39 2pl2_A Hypothetical conserved 98.3 6.3E-05 2.2E-09 79.2 23.5 116 965-1084 99-214 (217)
40 4a1s_A PINS, partner of inscut 98.3 7.4E-05 2.5E-09 85.3 25.6 286 764-1096 61-384 (411)
41 2q7f_A YRRB protein; TPR, prot 98.3 8.3E-05 2.8E-09 77.8 23.9 169 910-1093 62-231 (243)
42 3sf4_A G-protein-signaling mod 98.3 7.8E-05 2.7E-09 84.2 25.2 278 764-1088 22-340 (406)
43 3u4t_A TPR repeat-containing p 98.3 8.2E-05 2.8E-09 79.6 22.8 239 764-1065 16-266 (272)
44 3vtx_A MAMA; tetratricopeptide 98.3 0.00014 4.9E-09 73.4 23.1 165 910-1089 10-175 (184)
45 3uq3_A Heat shock protein STI1 98.2 0.00023 7.8E-09 74.8 25.2 217 764-1046 18-235 (258)
46 2pl2_A Hypothetical conserved 98.2 0.00011 3.6E-09 77.5 21.9 169 910-1094 10-190 (217)
47 1xnf_A Lipoprotein NLPI; TPR, 98.2 0.00013 4.4E-09 77.9 22.3 48 769-816 23-74 (275)
48 2q7f_A YRRB protein; TPR, prot 98.1 0.00016 5.3E-09 75.7 20.8 170 911-1095 29-199 (243)
49 3as5_A MAMA; tetratricopeptide 98.1 0.00015 5E-09 71.9 19.3 165 910-1089 13-178 (186)
50 3mkr_A Coatomer subunit epsilo 98.1 0.00067 2.3E-08 75.1 26.0 251 767-1091 15-271 (291)
51 4g1t_A Interferon-induced prot 98.0 0.0009 3.1E-08 77.8 25.9 52 766-817 66-126 (472)
52 3nf1_A KLC 1, kinesin light ch 98.0 0.00028 9.5E-09 76.4 19.6 266 780-1087 22-310 (311)
53 4g1t_A Interferon-induced prot 97.9 0.0019 6.6E-08 75.0 27.6 287 782-1090 48-369 (472)
54 2h6f_A Protein farnesyltransfe 97.9 0.0011 3.7E-08 76.8 23.5 171 910-1094 102-279 (382)
55 3mkr_A Coatomer subunit epsilo 97.9 0.0053 1.8E-07 67.8 28.0 168 912-1096 72-241 (291)
56 4i17_A Hypothetical protein; T 97.8 0.0018 6.1E-08 67.7 21.9 169 910-1092 12-217 (228)
57 4abn_A Tetratricopeptide repea 97.8 0.00094 3.2E-08 79.3 21.5 47 770-816 87-134 (474)
58 3ro2_A PINS homolog, G-protein 97.8 0.0027 9.2E-08 68.7 22.9 256 787-1088 7-296 (338)
59 4abn_A Tetratricopeptide repea 97.7 0.0027 9.1E-08 75.4 24.4 170 909-1093 106-296 (474)
60 3vtx_A MAMA; tetratricopeptide 97.7 0.0052 1.8E-07 61.7 23.2 138 949-1093 7-145 (184)
61 3as5_A MAMA; tetratricopeptide 97.7 0.0025 8.5E-08 62.8 20.4 129 964-1096 22-151 (186)
62 4a1s_A PINS, partner of inscut 97.7 0.0014 4.6E-08 74.7 20.9 258 785-1088 48-336 (411)
63 2fo7_A Synthetic consensus TPR 97.7 0.0014 4.8E-08 60.7 17.4 121 964-1088 15-136 (136)
64 1xnf_A Lipoprotein NLPI; TPR, 97.7 0.0021 7.1E-08 68.3 20.1 168 919-1098 19-187 (275)
65 4gyw_A UDP-N-acetylglucosamine 97.7 0.0013 4.5E-08 82.4 20.9 164 908-1086 12-176 (723)
66 1ouv_A Conserved hypothetical 97.6 0.042 1.4E-06 58.8 29.7 245 781-1093 2-260 (273)
67 3sf4_A G-protein-signaling mod 97.5 0.017 6E-07 64.7 26.3 259 784-1088 8-300 (406)
68 2vsy_A XCC0866; transferase, g 97.5 0.0023 7.8E-08 77.3 18.6 157 918-1089 2-162 (568)
69 2e2e_A Formate-dependent nitri 97.5 0.0034 1.2E-07 62.8 17.0 121 966-1090 26-150 (177)
70 3qky_A Outer membrane assembly 97.4 0.015 5.1E-07 62.1 22.7 193 764-987 28-232 (261)
71 4gyw_A UDP-N-acetylglucosamine 97.3 0.0094 3.2E-07 74.7 22.5 146 943-1095 5-151 (723)
72 3ulq_A Response regulator aspa 97.3 0.033 1.1E-06 63.0 25.3 246 791-1085 109-369 (383)
73 4ga2_A E3 SUMO-protein ligase 97.3 0.0032 1.1E-07 62.2 14.6 134 920-1066 12-146 (150)
74 3edt_B KLC 2, kinesin light ch 97.3 0.0052 1.8E-07 65.0 17.1 164 877-1046 17-197 (283)
75 3edt_B KLC 2, kinesin light ch 97.3 0.038 1.3E-06 58.2 23.8 178 763-979 13-198 (283)
76 4ga2_A E3 SUMO-protein ligase 97.2 0.0022 7.4E-08 63.4 12.5 127 965-1095 12-140 (150)
77 1hz4_A MALT regulatory protein 97.2 0.14 4.7E-06 57.4 28.8 172 910-1086 98-284 (373)
78 3qky_A Outer membrane assembly 97.2 0.011 3.7E-07 63.2 18.6 171 910-1090 20-230 (261)
79 3qou_A Protein YBBN; thioredox 97.2 0.009 3.1E-07 65.7 18.1 128 964-1094 131-260 (287)
80 2yhc_A BAMD, UPF0169 lipoprote 97.2 0.038 1.3E-06 57.9 21.8 97 911-1015 10-127 (225)
81 3nf1_A KLC 1, kinesin light ch 97.1 0.0054 1.9E-07 66.1 15.5 175 908-1087 30-227 (311)
82 3urz_A Uncharacterized protein 97.1 0.023 7.9E-07 58.9 19.5 161 912-1089 11-191 (208)
83 1hz4_A MALT regulatory protein 97.1 0.18 6.1E-06 56.4 28.1 275 765-1086 28-324 (373)
84 2pzi_A Probable serine/threoni 97.1 0.0037 1.3E-07 77.8 15.0 172 916-1096 402-575 (681)
85 2r5s_A Uncharacterized protein 97.0 0.01 3.5E-07 59.7 15.1 154 916-1083 17-172 (176)
86 2vgx_A Chaperone SYCD; alterna 97.0 0.0054 1.9E-07 60.5 12.7 115 972-1090 9-124 (148)
87 3gyz_A Chaperone protein IPGC; 97.0 0.0024 8.2E-08 63.9 9.8 113 973-1089 25-138 (151)
88 2fo7_A Synthetic consensus TPR 97.0 0.053 1.8E-06 49.7 18.4 123 912-1046 8-131 (136)
89 2xcb_A PCRH, regulatory protei 96.9 0.0019 6.4E-08 62.8 8.3 114 973-1090 7-121 (142)
90 1ouv_A Conserved hypothetical 96.9 0.39 1.3E-05 51.1 27.3 215 766-1046 21-250 (273)
91 4i17_A Hypothetical protein; T 96.9 0.025 8.6E-07 58.8 17.3 125 964-1092 21-156 (228)
92 1a17_A Serine/threonine protei 96.9 0.023 7.7E-07 55.2 15.7 115 964-1082 27-144 (166)
93 3q15_A PSP28, response regulat 96.8 0.29 1E-05 55.2 27.1 249 787-1084 103-365 (378)
94 2r5s_A Uncharacterized protein 96.8 0.0092 3.1E-07 60.0 13.0 122 964-1088 20-141 (176)
95 2vsy_A XCC0866; transferase, g 96.7 0.023 8E-07 68.4 17.6 127 966-1096 5-132 (568)
96 3dra_A Protein farnesyltransfe 96.6 1.1 3.7E-05 50.0 29.2 50 767-816 49-100 (306)
97 2dba_A Smooth muscle cell asso 96.6 0.042 1.4E-06 52.1 15.1 109 981-1093 25-137 (148)
98 2vyi_A SGTA protein; chaperone 96.6 0.027 9.3E-07 51.7 13.3 58 1032-1092 60-117 (131)
99 1na0_A Designed protein CTPR3; 96.6 0.056 1.9E-06 49.1 15.1 99 990-1092 15-114 (125)
100 3q49_B STIP1 homology and U bo 96.5 0.022 7.5E-07 53.8 12.5 104 980-1087 5-109 (137)
101 3qou_A Protein YBBN; thioredox 96.5 0.16 5.6E-06 55.4 21.3 65 781-859 113-177 (287)
102 4gco_A Protein STI-1; structur 96.5 0.025 8.4E-07 54.1 12.7 93 996-1092 25-118 (126)
103 1elw_A TPR1-domain of HOP; HOP 96.5 0.045 1.5E-06 49.3 13.9 58 1032-1092 52-109 (118)
104 2lni_A Stress-induced-phosphop 96.5 0.031 1E-06 51.9 13.0 58 1032-1092 64-121 (133)
105 2kck_A TPR repeat; tetratricop 96.4 0.019 6.5E-07 51.4 10.8 105 980-1088 2-110 (112)
106 3ulq_A Response regulator aspa 96.4 1.4 4.8E-05 49.4 28.6 171 910-1087 108-296 (383)
107 3upv_A Heat shock protein STI1 96.4 0.037 1.3E-06 51.8 12.8 58 1032-1092 52-115 (126)
108 3sz7_A HSC70 cochaperone (SGT) 96.3 0.022 7.7E-07 56.2 11.5 58 1032-1092 59-116 (164)
109 2xm6_A Protein corresponding t 96.3 2.3 7.8E-05 49.7 30.7 153 918-1087 272-435 (490)
110 1qqe_A Vesicular transport pro 96.2 0.16 5.4E-06 55.5 18.6 184 910-1099 82-284 (292)
111 2yhc_A BAMD, UPF0169 lipoprote 96.2 0.45 1.5E-05 49.5 21.4 150 964-1117 18-212 (225)
112 1elw_A TPR1-domain of HOP; HOP 96.2 0.15 5E-06 45.8 15.4 98 964-1064 18-116 (118)
113 2e2e_A Formate-dependent nitri 96.2 0.048 1.6E-06 54.3 13.1 125 919-1057 24-152 (177)
114 2vyi_A SGTA protein; chaperone 96.2 0.13 4.4E-06 47.0 15.2 101 964-1067 26-127 (131)
115 2lni_A Stress-induced-phosphop 96.1 0.13 4.3E-06 47.6 14.9 117 944-1066 13-130 (133)
116 2pzi_A Probable serine/threoni 96.1 0.087 3E-06 65.4 17.6 141 910-1065 438-579 (681)
117 1a17_A Serine/threonine protei 96.0 0.13 4.5E-06 49.6 15.0 99 990-1092 19-118 (166)
118 1qqe_A Vesicular transport pro 96.0 0.4 1.4E-05 52.2 20.5 216 786-1046 38-268 (292)
119 1p5q_A FKBP52, FK506-binding p 95.8 0.18 6E-06 56.7 17.2 116 964-1083 161-293 (336)
120 4gco_A Protein STI-1; structur 95.7 0.25 8.7E-06 46.9 15.5 95 964-1061 27-122 (126)
121 1na0_A Designed protein CTPR3; 95.7 0.37 1.3E-05 43.4 15.9 96 964-1062 23-119 (125)
122 3upv_A Heat shock protein STI1 95.7 0.27 9.1E-06 45.7 15.2 99 964-1063 18-121 (126)
123 1hh8_A P67PHOX, NCF-2, neutrop 95.5 0.34 1.2E-05 49.2 16.7 121 964-1089 20-155 (213)
124 1hxi_A PEX5, peroxisome target 95.5 0.083 2.9E-06 49.9 11.0 53 1032-1087 65-117 (121)
125 1p5q_A FKBP52, FK506-binding p 95.4 0.062 2.1E-06 60.4 11.6 117 974-1094 137-269 (336)
126 4a1g_A Mitotic checkpoint seri 95.4 0.29 9.8E-06 48.9 14.8 125 967-1099 7-145 (152)
127 3sz7_A HSC70 cochaperone (SGT) 95.3 0.52 1.8E-05 46.1 16.7 97 948-1048 12-109 (164)
128 2dba_A Smooth muscle cell asso 95.3 0.23 8E-06 46.7 13.6 112 948-1065 29-144 (148)
129 2if4_A ATFKBP42; FKBP-like, al 95.2 0.081 2.8E-06 59.6 11.5 123 964-1089 193-333 (338)
130 3urz_A Uncharacterized protein 95.2 0.19 6.6E-06 51.8 13.6 117 964-1083 18-152 (208)
131 2xm6_A Protein corresponding t 95.2 6.5 0.00022 45.8 34.5 45 767-813 59-107 (490)
132 3gyz_A Chaperone protein IPGC; 95.2 0.32 1.1E-05 48.2 14.5 100 943-1046 32-132 (151)
133 2ifu_A Gamma-SNAP; membrane fu 95.2 0.58 2E-05 51.4 18.2 164 915-1087 46-226 (307)
134 1elr_A TPR2A-domain of HOP; HO 95.1 0.19 6.5E-06 46.0 12.1 87 997-1087 17-111 (131)
135 2vgx_A Chaperone SYCD; alterna 95.1 0.13 4.6E-06 50.2 11.3 94 949-1046 23-117 (148)
136 3dss_A Geranylgeranyl transfer 95.0 1.3 4.3E-05 50.1 20.6 161 922-1093 47-231 (331)
137 2c2l_A CHIP, carboxy terminus 95.0 0.2 6.7E-06 54.7 13.7 186 910-1121 9-202 (281)
138 2xcb_A PCRH, regulatory protei 95.0 0.26 8.9E-06 47.3 13.1 92 964-1058 32-124 (142)
139 3q15_A PSP28, response regulat 94.9 6.1 0.00021 44.1 31.4 168 910-1087 106-293 (378)
140 2kat_A Uncharacterized protein 94.9 0.17 5.7E-06 46.5 10.9 74 769-856 3-76 (115)
141 2xev_A YBGF; tetratricopeptide 94.7 0.38 1.3E-05 44.4 13.1 91 997-1091 15-112 (129)
142 2kck_A TPR repeat; tetratricop 94.7 0.43 1.5E-05 42.2 12.8 94 912-1016 13-109 (112)
143 3dss_A Geranylgeranyl transfer 94.7 5.4 0.00018 44.9 24.5 184 921-1117 90-303 (331)
144 3q49_B STIP1 homology and U bo 94.7 0.43 1.5E-05 44.6 13.3 101 964-1065 23-127 (137)
145 3dra_A Protein farnesyltransfe 94.5 2.9 0.0001 46.4 21.7 202 904-1118 67-287 (306)
146 1hxi_A PEX5, peroxisome target 94.4 0.37 1.3E-05 45.3 12.2 82 964-1046 31-113 (121)
147 3k9i_A BH0479 protein; putativ 94.3 0.095 3.2E-06 48.6 7.7 90 998-1091 4-97 (117)
148 4aez_C MAD3, mitotic spindle c 94.2 0.73 2.5E-05 48.8 14.9 125 967-1099 52-194 (223)
149 1dce_A Protein (RAB geranylger 94.2 1.6 5.3E-05 53.0 20.2 169 921-1099 45-236 (567)
150 2fbn_A 70 kDa peptidylprolyl i 94.2 0.63 2.2E-05 47.1 14.4 109 964-1093 52-160 (198)
151 2xev_A YBGF; tetratricopeptide 94.1 0.98 3.4E-05 41.5 14.4 99 964-1065 16-121 (129)
152 1hh8_A P67PHOX, NCF-2, neutrop 94.1 1.5 5.2E-05 44.2 16.9 123 911-1048 12-151 (213)
153 1xi4_A Clathrin heavy chain; a 93.9 14 0.00047 49.2 28.5 131 984-1116 1280-1427(1630)
154 3mv2_B Coatomer subunit epsilo 93.8 1.3 4.4E-05 49.5 16.8 136 951-1096 104-262 (310)
155 3k9i_A BH0479 protein; putativ 93.8 0.16 5.5E-06 47.0 8.1 78 766-857 5-85 (117)
156 2c2l_A CHIP, carboxy terminus 93.7 0.57 1.9E-05 50.9 13.5 96 964-1060 18-117 (281)
157 1wao_1 Serine/threonine protei 93.5 0.12 4E-06 61.3 8.3 120 964-1087 20-153 (477)
158 1kt0_A FKBP51, 51 kDa FK506-bi 93.4 0.74 2.5E-05 54.0 14.8 105 964-1072 282-402 (457)
159 3rjv_A Putative SEL1 repeat pr 93.2 8.5 0.00029 39.4 21.5 160 912-1085 25-198 (212)
160 2fbn_A 70 kDa peptidylprolyl i 93.2 1.1 3.8E-05 45.2 14.0 77 987-1066 91-168 (198)
161 2kat_A Uncharacterized protein 93.1 0.59 2E-05 42.7 10.7 53 1032-1087 33-85 (115)
162 4g26_A Pentatricopeptide repea 93.0 8.5 0.00029 45.7 23.5 169 959-1130 35-216 (501)
163 3esl_A Checkpoint serine/threo 93.0 1.3 4.4E-05 46.2 13.9 128 967-1097 9-157 (202)
164 1elr_A TPR2A-domain of HOP; HO 93.0 2.3 7.8E-05 38.4 14.7 96 911-1017 10-112 (131)
165 3rkv_A Putative peptidylprolyl 92.9 1.2 4.2E-05 43.3 13.4 56 1032-1090 77-132 (162)
166 3gw4_A Uncharacterized protein 92.8 4.7 0.00016 39.8 18.0 171 768-982 9-179 (203)
167 3ro3_A PINS homolog, G-protein 92.7 3.4 0.00012 38.5 15.9 153 785-982 9-161 (164)
168 3q7a_A Farnesyltransferase alp 92.6 3.9 0.00013 46.4 18.7 161 921-1094 70-247 (349)
169 1zu2_A Mitochondrial import re 92.4 0.71 2.4E-05 46.4 10.8 96 261-357 19-125 (158)
170 2wvi_A Mitotic checkpoint seri 92.3 1.8 6.3E-05 43.7 13.7 120 972-1099 5-140 (164)
171 3u64_A Protein TP_0956; tetrat 92.3 5 0.00017 44.3 18.1 80 967-1046 180-268 (301)
172 2ifu_A Gamma-SNAP; membrane fu 92.2 5.7 0.00019 43.3 19.0 130 912-1049 83-225 (307)
173 3ro3_A PINS homolog, G-protein 92.1 2.5 8.6E-05 39.5 14.1 68 910-982 14-81 (164)
174 1kt0_A FKBP51, 51 kDa FK506-bi 92.0 0.26 8.9E-06 57.9 8.3 105 986-1094 270-390 (457)
175 2qfc_A PLCR protein; TPR, HTH, 92.0 11 0.00037 40.5 20.9 165 913-1085 83-267 (293)
176 1na3_A Designed protein CTPR2; 92.0 0.65 2.2E-05 39.8 9.0 52 765-816 23-74 (91)
177 3e4b_A ALGK; tetratricopeptide 91.9 18 0.00061 41.9 23.9 44 770-816 164-210 (452)
178 3rkv_A Putative peptidylprolyl 91.4 2.2 7.6E-05 41.3 13.2 104 910-1016 16-129 (162)
179 3ly7_A Transcriptional activat 91.2 5.4 0.00018 45.5 17.6 123 965-1093 214-348 (372)
180 3ma5_A Tetratricopeptide repea 91.1 0.81 2.8E-05 41.1 8.9 63 780-856 2-64 (100)
181 3u64_A Protein TP_0956; tetrat 91.0 0.63 2.2E-05 51.4 9.3 87 1000-1088 179-273 (301)
182 3u3w_A Transcriptional activat 90.9 3.8 0.00013 44.1 15.7 161 916-1085 86-267 (293)
183 4f3v_A ESX-1 secretion system 90.5 2.5 8.4E-05 46.6 13.6 140 946-1092 101-244 (282)
184 3mv2_B Coatomer subunit epsilo 90.5 11 0.00039 41.8 19.1 165 912-1091 107-289 (310)
185 1ihg_A Cyclophilin 40; ppiase 90.4 1.2 4.1E-05 50.8 11.5 60 1032-1094 287-346 (370)
186 1na3_A Designed protein CTPR2; 90.2 1.8 6.2E-05 36.8 10.1 59 1032-1093 23-81 (91)
187 3rjv_A Putative SEL1 repeat pr 90.1 18 0.00062 36.8 20.5 151 964-1119 32-198 (212)
188 1ihg_A Cyclophilin 40; ppiase 89.5 2.5 8.5E-05 48.1 13.2 109 964-1076 237-362 (370)
189 1zu2_A Mitochondrial import re 89.5 1.1 3.6E-05 45.2 8.8 26 967-992 19-44 (158)
190 3gw4_A Uncharacterized protein 89.3 3.9 0.00013 40.4 13.2 162 918-1092 5-184 (203)
191 2l6j_A TPR repeat-containing p 88.9 1.2 4.2E-05 39.5 8.2 54 764-817 17-70 (111)
192 3ma5_A Tetratricopeptide repea 88.9 0.53 1.8E-05 42.4 5.7 52 765-816 21-72 (100)
193 2kc7_A BFR218_protein; tetratr 88.9 0.6 2E-05 41.2 5.9 52 766-817 15-67 (99)
194 2l6j_A TPR repeat-containing p 88.8 1.6 5.3E-05 38.8 8.8 55 1031-1088 17-71 (111)
195 2kc7_A BFR218_protein; tetratr 88.4 1.5 5.2E-05 38.5 8.4 58 1032-1092 14-72 (99)
196 1wao_1 Serine/threonine protei 88.4 2.5 8.5E-05 49.8 12.6 93 996-1092 18-111 (477)
197 2if4_A ATFKBP42; FKBP-like, al 88.3 0.81 2.8E-05 51.3 7.9 95 995-1093 190-302 (338)
198 3bee_A Putative YFRE protein; 88.2 2.2 7.4E-05 38.6 9.3 78 947-1025 6-83 (93)
199 4g26_A Pentatricopeptide repea 88.1 5.4 0.00018 47.4 15.3 141 987-1130 29-181 (501)
200 4gcn_A Protein STI-1; structur 87.2 3.8 0.00013 38.5 10.8 54 764-817 21-74 (127)
201 4gcn_A Protein STI-1; structur 86.8 5.9 0.0002 37.1 11.9 90 964-1088 22-116 (127)
202 3bee_A Putative YFRE protein; 86.7 1.2 4.1E-05 40.3 6.6 51 767-817 25-75 (93)
203 1dce_A Protein (RAB geranylger 86.7 18 0.00061 43.6 19.0 171 766-994 44-235 (567)
204 4f3v_A ESX-1 secretion system 86.0 11 0.00037 41.4 15.0 90 764-859 19-128 (282)
205 3e4b_A ALGK; tetratricopeptide 84.0 67 0.0023 37.0 24.3 182 920-1119 194-388 (452)
206 3u3w_A Transcriptional activat 83.1 18 0.00063 38.6 15.3 122 963-1088 88-229 (293)
207 4a1g_A Mitotic checkpoint seri 82.8 8.5 0.00029 38.3 11.1 66 767-839 81-148 (152)
208 1xi4_A Clathrin heavy chain; a 82.1 1.5E+02 0.0052 39.7 26.9 44 1032-1086 1209-1252(1630)
209 4aez_C MAD3, mitotic spindle c 80.7 12 0.00042 39.5 12.0 66 767-839 130-197 (223)
210 2wvi_A Mitotic checkpoint seri 79.6 10 0.00036 38.1 10.6 65 768-839 77-143 (164)
211 4b4t_Q 26S proteasome regulato 77.4 38 0.0013 37.8 16.1 165 914-1085 64-246 (434)
212 2qfc_A PLCR protein; TPR, HTH, 76.5 46 0.0016 35.4 15.8 129 912-1046 122-265 (293)
213 3q7a_A Farnesyltransferase alp 75.4 1.1E+02 0.0038 34.4 28.2 49 768-816 71-120 (349)
214 3n71_A Histone lysine methyltr 75.2 17 0.00057 43.1 12.6 132 963-1096 322-476 (490)
215 2hr2_A Hypothetical protein; a 75.0 24 0.00083 35.2 11.8 103 910-1015 16-133 (159)
216 4b4t_Q 26S proteasome regulato 73.0 1.2E+02 0.0041 33.6 25.5 202 766-1012 19-244 (434)
217 3ly7_A Transcriptional activat 71.7 45 0.0015 37.9 14.4 135 920-1063 214-354 (372)
218 2hr2_A Hypothetical protein; a 68.2 43 0.0015 33.4 11.8 49 766-814 26-86 (159)
219 1klx_A Cysteine rich protein B 67.5 82 0.0028 29.6 13.5 112 966-1084 11-126 (138)
220 2v5f_A Prolyl 4-hydroxylase su 66.6 69 0.0024 28.6 12.2 75 910-988 10-84 (104)
221 2v5f_A Prolyl 4-hydroxylase su 54.6 39 0.0013 30.2 8.2 59 1032-1091 19-82 (104)
222 3esl_A Checkpoint serine/threo 53.5 40 0.0014 35.0 8.7 65 768-839 96-162 (202)
223 1pc2_A Mitochondria fission pr 52.4 58 0.002 32.2 9.4 56 1033-1090 50-106 (152)
224 3n71_A Histone lysine methyltr 52.2 1.7E+02 0.0057 34.4 15.1 27 909-935 397-423 (490)
225 1b89_A Protein (clathrin heavy 42.6 1.7E+02 0.0057 34.1 12.7 185 910-1117 153-355 (449)
226 1zbp_A Hypothetical protein VP 40.2 2.5E+02 0.0087 30.4 12.7 117 963-1087 10-132 (273)
227 1pc2_A Mitochondria fission pr 33.2 1.6E+02 0.0056 29.0 9.1 80 967-1048 15-101 (152)
228 3qww_A SET and MYND domain-con 27.9 3.1E+02 0.01 31.6 11.9 90 919-1011 312-409 (433)
229 3qww_A SET and MYND domain-con 26.6 1.3E+02 0.0044 34.8 8.3 51 766-816 355-413 (433)
230 1klx_A Cysteine rich protein B 20.0 5.1E+02 0.018 23.8 13.4 110 920-1046 10-125 (138)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.88 E-value=1e-19 Score=225.93 Aligned_cols=245 Identities=10% Similarity=0.045 Sum_probs=184.5
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCch
Q 001167 770 CQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHAR-RVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDS 848 (1134)
Q Consensus 770 aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~AR-kVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~ 848 (1134)
++.+.++.|..+|.+-.+|..||+++..+|+.+.|+ +||++|+..+|. ...||+.||.+|+..++
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--------s~~Lwl~~a~~ee~~~~------ 393 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--------SAVLAFSLSEQYELNTK------ 393 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCC------
Confidence 456778888889999999999999999999999996 999999998872 35799999999998753
Q ss_pred HHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001167 849 SLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVL 928 (1134)
Q Consensus 849 ~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~ 928 (1134)
+++ ||..|+.++..... .+..+.......
T Consensus 394 ~e~----------------------------aR~iyek~l~~l~~-------------------~~~~~~~~~p~~---- 422 (679)
T 4e6h_A 394 IPE----------------------------IETTILSCIDRIHL-------------------DLAALMEDDPTN---- 422 (679)
T ss_dssp HHH----------------------------HHHHHHHHHHHHHH-------------------HHHHHHHHSTTC----
T ss_pred HHH----------------------------HHHHHHHHHHHHHH-------------------HhhhhhhccCcc----
Confidence 333 34444444322100 000000000000
Q ss_pred HHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhhCC-ChhHHHHH
Q 001167 929 HQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYP-YSPKLFNTLVEISNLYT-TPNKLRWI 1006 (1134)
Q Consensus 929 ~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP-~N~~ll~~~~~lE~~~~-~~~raR~i 1006 (1134)
...+.. .......+|+.+++++.+.+ ++..+|.++.+|++..| ....+|..++.+|...+ ..++||.+
T Consensus 423 ~~~~~~-------~~~~~~~vWi~y~~~erR~~---~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 423 ESAINQ-------LKSKLTYVYCVYMNTMKRIQ---GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hhhhhh-------hccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence 000010 01235679999999998764 68899999999999844 45677888888997654 47999999
Q ss_pred HHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC-CCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh
Q 001167 1007 FDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDT-VRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus 1007 l~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~-~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~ 1084 (1134)
|++++..+| +...|+.++.+|... |...+||++||+|+.... ...+..||..|++||... |+.+.++.|+.|++++
T Consensus 493 fe~~Lk~~p~~~~~w~~y~~fe~~~-~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~-G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 493 LELGLKYFATDGEYINKYLDFLIYV-NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV-GSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 999999988 778888999999877 799999999999998322 125789999999999996 9999999999999999
Q ss_pred CCCcHHH
Q 001167 1085 CPWSKRL 1091 (1134)
Q Consensus 1085 CPwsK~L 1091 (1134)
||.++.+
T Consensus 571 ~P~~~~~ 577 (679)
T 4e6h_A 571 FPEVNKL 577 (679)
T ss_dssp STTCCHH
T ss_pred CCCCcHH
Confidence 9987653
No 2
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.79 E-value=3.3e-17 Score=203.59 Aligned_cols=355 Identities=11% Similarity=0.076 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHhhcC---CcchHHHHHHHHHHHHHHhhhhhcCCC-------CCChHHHHHHHhh---h-cCCCHHHHHH
Q 001167 725 MEFLRNAILLCLTVF---PRNYVLEEAALVAEELSVTKMNLSGCS-------VTPCQPLAKGLLK---S-DRQDVLLCGV 790 (1134)
Q Consensus 725 ~~~v~~~l~~~~~~~---~~~~~l~e~~l~~~~l~~~~~~~~~~~-------~k~aRk~aK~LLk---~-~~~nl~LW~a 790 (1134)
..-++++|..++..+ +.-..... ++.+....... ...+|+++...|. . ++.+-.+|.+
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~--------Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~ 190 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLS--------YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNE 190 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHH--------HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHH--------HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 456788888888887 43222222 22222111111 1223455555554 3 7888999999
Q ss_pred HHHHHHH---------cCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCc-------hHHHHHH
Q 001167 791 YARREAF---------FGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPD-------SSLRAIH 854 (1134)
Q Consensus 791 YA~lE~~---------~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e-------~~~rAi~ 854 (1134)
|+.+|.. +++++.||+||++||. .|. .....+|..|..+|...+...... .+.+|..
T Consensus 191 Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~------~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~ 263 (679)
T 4e6h_A 191 YLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPM------DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARS 263 (679)
T ss_dssp HHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCC------SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-Ccc------HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHH
Confidence 9999763 4568999999999996 442 245689999999988753211100 1122322
Q ss_pred HHH---hcCCCCC--CC-----------CccCC----------------------CCh-hHHHHHHHHHHHHHHHHHHHh
Q 001167 855 VLS---CLGSGST--YT-----------PFKCQ----------------------PSN-VQVLRAHQGYMERIKAVRSAW 895 (1134)
Q Consensus 855 iL~---~l~~~~~--~~-----------~~~~~----------------------~s~-~~ILkAr~~~~~~l~~~~s~l 895 (1134)
.+. .+..+.. +. |.... +.. ...-|++..|++++..+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~---- 339 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV---- 339 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc----
Confidence 221 1111110 00 10000 000 11223445677766443
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 001167 896 LRGAVSDQSIALICSAALFEELTNGWTAGI-EVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTL 974 (1134)
Q Consensus 896 ~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~-~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~ 974 (1134)
.....+|..||.|+...++.+.|+ .+|++|+... |....||..++.++..++ .+.++|++++
T Consensus 340 ------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~---~~e~aR~iye 402 (679)
T 4e6h_A 340 ------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNT---KIPEIETTIL 402 (679)
T ss_dssp ------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 123567779999999888888896 9999998754 345789999999987654 5889999999
Q ss_pred HHHHhC-----------CC-----------CHHHHHHHHHHHhhCCChhHHHHHHHHHHhh-CC-CHHHHHHHHHHHHHc
Q 001167 975 HGLQIY-----------PY-----------SPKLFNTLVEISNLYTTPNKLRWIFDLYCHK-KP-SLVVSLFALAFEMSR 1030 (1134)
Q Consensus 975 ~aL~~f-----------P~-----------N~~ll~~~~~lE~~~~~~~raR~il~~~~~~-~p-s~~~wlfaI~~E~~r 1030 (1134)
++|..+ |. +..+|..|+.+|.+.+..++||.+|.+++.. .+ +..+|+.++.+|...
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 999864 64 3568999999998888899999999999986 32 567888888899876
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhhccChHH
Q 001167 1031 KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACP---WSKRLWLDGFLKLNSILTAKE 1107 (1134)
Q Consensus 1031 ~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CP---wsK~L~m~a~~~l~~~~~~~E 1107 (1134)
+++..+||.+||+||. .+++++.+|..|++||... |+.++||.+|.||+..|| ..+.||.-.+..-...-+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk--~~p~~~~~w~~y~~fe~~~-~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 483 SKDTKTACKVLELGLK--YFATDGEYINKYLDFLIYV-NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TSCCHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred CCCHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5668999999999999 6899999999999999996 999999999999999999 688899877764333335667
Q ss_pred HHHHHHHhhhc
Q 001167 1108 LSDLQEVMRDK 1118 (1134)
Q Consensus 1108 L~~l~dvM~EK 1118 (1134)
.++|.+-|.+.
T Consensus 560 ~~~v~~R~~~~ 570 (679)
T 4e6h_A 560 VRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888877654
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.78 E-value=1.5e-16 Score=191.51 Aligned_cols=328 Identities=13% Similarity=0.029 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhhcCCCCCChHHHHHHHhhh---cCCCHHHHHHHHHHHH----H
Q 001167 725 MEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQPLAKGLLKS---DRQDVLLCGVYARREA----F 797 (1134)
Q Consensus 725 ~~~v~~~l~~~~~~~~~~~~l~e~~l~~~~l~~~~~~~~~~~~k~aRk~aK~LLk~---~~~nl~LW~aYA~lE~----~ 797 (1134)
.+=++.++..++..+|.-.... .++.+.+.........+.++...|.. ++.+..+|..|+.++. .
T Consensus 30 ~e~~~~iferal~~~ps~~LW~--------~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~ 101 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSYNLDLWM--------LYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDE 101 (493)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHH--------HHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSH
T ss_pred HHHHHHHHHHHhccCCCHHHHH--------HHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhh
Confidence 4456667777777666432222 23333332222346678888887775 7889999999999965 5
Q ss_pred cCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHH
Q 001167 798 FGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQV 877 (1134)
Q Consensus 798 ~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~I 877 (1134)
+|+++.+|+||++||. .|. .....+|..|.++|...+ ...|..++... ....
T Consensus 102 ~~~~~~vR~iy~rAL~-~P~------~~~~~lw~~Y~~fE~~~~-------~~~~~~~~~~~--------------~~~y 153 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQ-TPM------GSLSELWKDFENFELELN-------KITGKKIVGDT--------------LPIF 153 (493)
T ss_dssp HHHHHHHHHHHHHHHT-SCC------TTHHHHHHHHHHHHHHHC-------HHHHHHHHHHH--------------HHHH
T ss_pred hHHHHHHHHHHHHHHh-Chh------hhHHHHHHHHHHHHHHhc-------cccHHHHHHHH--------------hHHH
Confidence 6889999999999998 442 245689999999998753 12233333221 1345
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-C------HHHHHHHHHHHHHhhcCccccCCccHHHHH
Q 001167 878 LRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN-G------WTAGIEVLHQAFAMVLPERRSCSHQLEFLF 950 (1134)
Q Consensus 878 LkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~-~------~~~A~~v~~~al~~~~~~~~~~~~~~E~L~ 950 (1134)
.+||..|.+...... . ....+|..|+.||.-.. + ...+..+|++++... +..+.+|
T Consensus 154 ~~ar~~y~~~~~~~~-~--------~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--------p~~~~lW 216 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIR-G--------WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--------YYAEEVY 216 (493)
T ss_dssp HHHHHHHHHHHHHHH-T--------CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--------TTCHHHH
T ss_pred HHHHHHHHHHHHHHh-h--------ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--------CCCHHHH
Confidence 677877776653321 1 12346777888876321 1 345778999998864 3348899
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------------------------------------
Q 001167 951 NFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEI------------------------------------- 993 (1134)
Q Consensus 951 ~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~l------------------------------------- 993 (1134)
..|++++..+ +++..+|.++++|+.. |.+..||..|+.+
T Consensus 217 ~~ya~~~~~~---~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 217 FFYSEYLIGI---GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 9999998654 5688999999999999 9997777666554
Q ss_pred ---HhhCCChhHHHHHHHHHHhhC-CCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcC
Q 001167 994 ---SNLYTTPNKLRWIFDLYCHKK-PSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIAS 1069 (1134)
Q Consensus 994 ---E~~~~~~~raR~il~~~~~~~-ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~ 1069 (1134)
+.+.+..++||.+|+++ ... .+..+|+..+.+|...+++..+||.+||.|+. ..++++.+|..|++||+.. |
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~--~~~~~~~~~~~yid~e~~~-~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL--KHPDSTLLKEEFFLFLLRI-G 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHc-C
Confidence 22344567888888888 322 25567777777787665568888888888887 4567788888888888875 8
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1070 NPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
+.++||.||.|+ +.++.||...+..-...-+.+..+++++-+.+
T Consensus 369 ~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 DEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888887 45788887776543333345567777766654
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3.4e-15 Score=180.11 Aligned_cols=356 Identities=13% Similarity=0.057 Sum_probs=239.1
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhhcCCCCCChHH----HHHHHhhh---cCCCHHHHHHHHHHHH
Q 001167 724 MMEFLRNAILLCLTVFPRNYVLEEAALVAEELSVTKMNLSGCSVTPCQP----LAKGLLKS---DRQDVLLCGVYARREA 796 (1134)
Q Consensus 724 ~~~~v~~~l~~~~~~~~~~~~l~e~~l~~~~l~~~~~~~~~~~~k~aRk----~aK~LLk~---~~~nl~LW~aYA~lE~ 796 (1134)
..+-++.++..++...|.......++. .......+...|+. +.+..|+. ++.+..+|..|+.+|.
T Consensus 61 ~~~~a~~~~~ral~~~p~~~lw~~~~~--------~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~ 132 (530)
T 2ooe_A 61 NYDKVEKLFQRCLMKVLHIDLWKCYLS--------YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLK 132 (530)
T ss_dssp CHHHHHHHHHHHTTTCCCHHHHHHHHH--------HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHH--------HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHh
Confidence 345677888888888874221111111 11111234566766 44444443 6788999999999998
Q ss_pred H---------cCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC-------CCCchHHHHHHHHHh--
Q 001167 797 F---------FGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG-------SDPDSSLRAIHVLSC-- 858 (1134)
Q Consensus 797 ~---------~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~-------~~~e~~~rAi~iL~~-- 858 (1134)
. .|+++.|++||++|++ .|. .....+|..|+.+|...+.. .....+..|+.++..
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~y~~al~-~P~------~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~ 205 (530)
T 2ooe_A 133 GVEAVGSYAENQRITAVRRVYQRGCV-NPM------INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE 205 (530)
T ss_dssp HSCCCSSTTHHHHHHHHHHHHHHHTT-SCC------TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHhHHHHHHHHHHHHHh-chh------hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7 7999999999999998 452 13457899999887654310 000123445433321
Q ss_pred -----cCCCCC-CCCccCC----------------------CChh--HHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHH
Q 001167 859 -----LGSGST-YTPFKCQ----------------------PSNV--QVLRAHQGYMERIKAVRSAWLRGAVSDQSIALI 908 (1134)
Q Consensus 859 -----l~~~~~-~~~~~~~----------------------~s~~--~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~ 908 (1134)
+..... ..|.... .... ..-++...|++++... +....+|
T Consensus 206 ~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~----------p~~~~~w 275 (530)
T 2ooe_A 206 TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL----------GHHPDIW 275 (530)
T ss_dssp HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH----------TTCHHHH
T ss_pred HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC----------CCCHHHH
Confidence 111000 0000000 0000 0113334555555332 1224566
Q ss_pred HHHHHHHHH-------hcCHH-------HHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 001167 909 CSAALFEEL-------TNGWT-------AGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTL 974 (1134)
Q Consensus 909 ~~~Alfe~L-------t~~~~-------~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~ 974 (1134)
..++.+... .++++ .|+.+|++|+... .|....+|..++.++... +.+..++.++.
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-------~p~~~~l~~~~~~~~~~~---g~~~~A~~~~~ 345 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKKNMLLYFAYADYEESR---MKYEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-------CSSCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhc---CCHHHHHHHHH
Confidence 677777664 46666 8999999998632 234577999999887654 46889999999
Q ss_pred HHHHhCCCCH-HHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCC
Q 001167 975 HGLQIYPYSP-KLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRC 1052 (1134)
Q Consensus 975 ~aL~~fP~N~-~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~ 1052 (1134)
++|...|.++ ..|..|+.++.+.+..+.+|.+|.+++..+|. ...|+..+..|....|+..+|+.+|++|+. .++.
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~ 423 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGD 423 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTT
T ss_pred HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCC
Confidence 9999999995 68989999988888899999999999988773 444554455554444889999999999998 6688
Q ss_pred CHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1053 SVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSK----RLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1053 s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK----~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
++.+|..|+.|+... |+.++||.+|.||+..||.+. .||...+......-+.+....+..-+.+
T Consensus 424 ~~~~~~~~~~~~~~~-g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999985 999999999999999998764 4998777654444456666666665543
No 5
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.70 E-value=5.4e-15 Score=177.92 Aligned_cols=292 Identities=15% Similarity=0.103 Sum_probs=200.2
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGN-IDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD 845 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn-~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~ 845 (1134)
...++.+.++.|+..| ++.||..|+.++.+.|+ .+..+++|+.|+..+..- ..+..+|..|++++.....
T Consensus 30 ~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d-----~~s~~iW~~Yi~f~~~~~~--- 100 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY-----WDSYGLYKEYIEEEGKIED--- 100 (493)
T ss_dssp HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC-----TTCHHHHHHHHHHTSSCSS---
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC-----cccHHHHHHHHHHHHhchh---
Confidence 5668899999999988 79999999999999874 567899999999876421 1345899999999764210
Q ss_pred CchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH----------
Q 001167 846 PDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFE---------- 915 (1134)
Q Consensus 846 ~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe---------- 915 (1134)
....+.++|.+|+.++.. +......+|..|..|+
T Consensus 101 ---------------------------~~~~~~~vR~iy~rAL~~---------P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 101 ---------------------------EQTRIEKIRNGYMRALQT---------PMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTS---------CCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ---------------------------hhHHHHHHHHHHHHHHhC---------hhhhHHHHHHHHHHHHHHhccccHHH
Confidence 011222333333333210 0001112222333332
Q ss_pred ---HHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHHhCCCCHHHHH
Q 001167 916 ---ELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLS----LSTVWETTLHGLQIYPYSPKLFN 988 (1134)
Q Consensus 916 ---~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~----l~~~R~~l~~aL~~fP~N~~ll~ 988 (1134)
.....+..|+.+|..+...... ....+|..|+.++..+..... ..+++.+++++|..+|+++.+|.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~-------~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~ 217 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRG-------WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYF 217 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-------CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2223456678888766654321 123589999988764321111 34678899999999999999999
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHH----------------------------------------HHHHHHH
Q 001167 989 TLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVS----------------------------------------LFALAFE 1027 (1134)
Q Consensus 989 ~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~w----------------------------------------lfaI~~E 1027 (1134)
.|+.++...+..+++|.+|++++.. | +..+| +.++.+|
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 9999998889999999999999988 6 43444 4444444
Q ss_pred HHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHH
Q 001167 1028 MSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKE 1107 (1134)
Q Consensus 1028 ~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~E 1107 (1134)
... ++..+||.+|++| ..+. .+..+|..++.+|....++.++||.||.+|+..||.++.+|+..+..+...-..+.
T Consensus 297 ~r~-~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 297 LKK-RGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHH-HCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHc-CCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence 433 5689999999999 5332 36779998899998864569999999999999999999999987765433334456
Q ss_pred HHHHHHHh
Q 001167 1108 LSDLQEVM 1115 (1134)
Q Consensus 1108 L~~l~dvM 1115 (1134)
-+.|++-.
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 67777665
No 6
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=1.2e-14 Score=162.92 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=199.5
Q ss_pred cCCCHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHH
Q 001167 781 DRQDVLLCGVYARREAFF----GNI----DHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRA 852 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~----Gn~----e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rA 852 (1134)
++.++.+|.+|+.+|..+ ++. +.|..+|++|+...| ....+|+.|+.++...+ +
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p--------~~~~~w~~~~~~~~~~~---------~- 65 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG--------HHPDIWYEAAQYLEQSS---------K- 65 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHH---------H-
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHhc---------h-
Confidence 355689999999999986 344 789999999999887 34579999998877531 1
Q ss_pred HHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001167 853 IHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAF 932 (1134)
Q Consensus 853 i~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al 932 (1134)
.|...+.- ......+.+|+..|++++... ++....+|..++.++...++++.|+.+|++++
T Consensus 66 --~l~~~g~~--------~~~~~~~~~A~~~~~rAl~~~---------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 66 --LLAEKGDM--------NNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp --HHHHTSCC--------HHHHHHHHHHHHHHHHHHTTT---------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --hhhhccch--------hhcccchHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01111100 001123456677777765321 12335567788999999999999999999999
Q ss_pred HhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh-CCChhHHHHHHHHHH
Q 001167 933 AMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNL-YTTPNKLRWIFDLYC 1011 (1134)
Q Consensus 933 ~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~-~~~~~raR~il~~~~ 1011 (1134)
...+ . ..+.+|..++.++... +.+..++..+.++++..|.+..+|..++.++.. .+..+.++.+|++++
T Consensus 127 ~~~p-~------~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al 196 (308)
T 2ond_A 127 AIED-I------DPTLVYIQYMKFARRA---EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 196 (308)
T ss_dssp TSSS-S------CTHHHHHHHHHHHHHH---HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred hccc-c------CccHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8432 1 1234888888888665 367889999999999999998888777777743 688999999999999
Q ss_pred hhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC-CC-CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1012 HKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDT-VR-CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1012 ~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~-~~-~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
..+| +...|+..+.++... |...+|+.+|++|+.... .+ .+..+|..|+.|+... |+.+.|..++.||++.+|.+
T Consensus 197 ~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 197 KKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHTTTT
T ss_pred HhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcccc
Confidence 8877 788998888888766 899999999999998432 22 4789999999999986 99999999999999999975
Q ss_pred H
Q 001167 1089 K 1089 (1134)
Q Consensus 1089 K 1089 (1134)
.
T Consensus 275 ~ 275 (308)
T 2ond_A 275 Y 275 (308)
T ss_dssp T
T ss_pred c
Confidence 4
No 7
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=8.1e-14 Score=168.02 Aligned_cols=331 Identities=11% Similarity=0.066 Sum_probs=224.0
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh-cCCC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS-SNSG 843 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~-~~~~ 843 (1134)
.+...|+++.+++|+.+|.+..+|..||.+|...|+++.|+++|++|+...| +. .+|+.|+.+... .++.
T Consensus 26 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p--------~~-~lw~~~~~~~~~~~~~~ 96 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--------HI-DLWKCYLSYVRETKGKL 96 (530)
T ss_dssp SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC--------CH-HHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------Ch-HHHHHHHHHHHHHccch
Confidence 4578899999999999999999999999999999999999999999999887 22 489999976554 3332
Q ss_pred CCC-c----hHHHHHHHHHhcCCCCC----CCCcc----------CCCChhHHHHHHHHHHHHHHH-------HHH----
Q 001167 844 SDP-D----SSLRAIHVLSCLGSGST----YTPFK----------CQPSNVQVLRAHQGYMERIKA-------VRS---- 893 (1134)
Q Consensus 844 ~~~-e----~~~rAi~iL~~l~~~~~----~~~~~----------~~~s~~~ILkAr~~~~~~l~~-------~~s---- 893 (1134)
... + .+.+|+. .++.... +..+. .-.....+.+|+..|..++.. .+.
T Consensus 97 ~~a~~~~~~~~~~al~---~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALD---KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173 (530)
T ss_dssp TTHHHHHHHHHHHHHH---HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH---HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 211 1 2222322 1121110 00000 000134566667666665421 000
Q ss_pred ------------------------------------HhhhcC--CCc-------hHHHHHHHHHHHHHHhc----C----
Q 001167 894 ------------------------------------AWLRGA--VSD-------QSIALICSAALFEELTN----G---- 920 (1134)
Q Consensus 894 ------------------------------------~l~~~~--~~~-------~~v~l~~~~Alfe~Lt~----~---- 920 (1134)
.+.... ++. ....+|..|..|+.-.. +
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 000000 010 11234445554443211 1
Q ss_pred HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhh----ccCCHH-------HHHHHHHHHHH-hCCCCHHHHH
Q 001167 921 WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHH----KQLSLS-------TVWETTLHGLQ-IYPYSPKLFN 988 (1134)
Q Consensus 921 ~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~----~~~~l~-------~~R~~l~~aL~-~fP~N~~ll~ 988 (1134)
...++.+|++++... |....+|..++.++..+. ..+.+. .++.++++|+. ..|++..+|.
T Consensus 254 ~~~a~~~y~~al~~~--------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp HHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 135667788777753 345789999998886531 124444 79999999997 7999999999
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHhhCCC--HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH
Q 001167 989 TLVEISNLYTTPNKLRWIFDLYCHKKPS--LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY 1066 (1134)
Q Consensus 989 ~~~~lE~~~~~~~raR~il~~~~~~~ps--~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~ 1066 (1134)
.|+.++...+..+++|.+|++++...|. ...|+..+.++... |+...|+.+|++|+..+.+ +..+|...+.++..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDART--RHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh-cCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHH
Confidence 9999999999999999999999998774 35898888887765 7889999999999985443 34444433333322
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhc
Q 001167 1067 IASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDK 1118 (1134)
Q Consensus 1067 ~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EK 1118 (1134)
..|+.++|+.+|.+||..||.+..+|+..+..+...=..++-+.+++-..+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 2489999999999999999999999988777654444567777777766554
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.9e-11 Score=136.76 Aligned_cols=217 Identities=14% Similarity=0.110 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh-------cCH-------HHHHHHHHHHHHhhcCccccCCc
Q 001167 879 RAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELT-------NGW-------TAGIEVLHQAFAMVLPERRSCSH 944 (1134)
Q Consensus 879 kAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt-------~~~-------~~A~~v~~~al~~~~~~~~~~~~ 944 (1134)
+|...|++++... .....+|..++.+.... +++ +.|+.+|++|+..+. +
T Consensus 34 ~a~~~~~~al~~~----------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------p 96 (308)
T 2ond_A 34 RVMFAYEQCLLVL----------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------K 96 (308)
T ss_dssp HHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------T
T ss_pred HHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------c
Confidence 4556677766443 12345565666666532 554 899999999998432 3
Q ss_pred cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHH
Q 001167 945 QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK-LFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLF 1022 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~-ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlf 1022 (1134)
....+|..++.++... +.+..++.++.++|...|.+.. .|..|+.++.+.+..+.+|.+|++++..+| +...|+-
T Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 97 KNMLLYFAYADYEESR---MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp TCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred ccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4567899998887654 4688999999999999999976 788999999888899999999999998766 5677776
Q ss_pred HHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhC--C--CcHHHHHHHHHH
Q 001167 1023 ALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHAC--P--WSKRLWLDGFLK 1098 (1134)
Q Consensus 1023 aI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~C--P--wsK~L~m~a~~~ 1098 (1134)
.+..|....|....|+.+|++|+. ..+.++.+|..|+.++... |++++|+.+|.||+..| | .+..+|+.-+..
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 666765444899999999999998 5678999999999999986 99999999999999986 4 477899887766
Q ss_pred hhhccChHHHHHHHHHhhhc
Q 001167 1099 LNSILTAKELSDLQEVMRDK 1118 (1134)
Q Consensus 1099 l~~~~~~~EL~~l~dvM~EK 1118 (1134)
....-+.++...+++-+.+.
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 54444566777776666543
No 9
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.27 E-value=2.7e-11 Score=119.66 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=100.5
Q ss_pred hCCCCHHHHHHHHHHHhhCCCh------hHHHHHHHHHHhhCCC---------HHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001167 979 IYPYSPKLFNTLVEISNLYTTP------NKLRWIFDLYCHKKPS---------LVVSLFALAFEMSRKGPPHRIRGLFER 1043 (1134)
Q Consensus 979 ~fP~N~~ll~~~~~lE~~~~~~------~raR~il~~~~~~~ps---------~~~wlfaI~~E~~r~g~~~raRalFEr 1043 (1134)
.-|+|+.-|..|+.++...+.. +++|.+|++++...|+ +.+|+.+..++.. ++++++|.+|..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei--~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAI--QEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHH--HCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHh--cCHHHHHHHHHH
Confidence 5799999999999987666877 9999999999988773 5789755544432 589999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhh
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLN 1100 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~ 1100 (1134)
|+.. |+..+.+|.+|.+||+++ |++.+||.|+.+||+.||..+++.-.|+..|.
T Consensus 86 a~~~--hKkFAKiwi~~AqFEiRq-gnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 86 ARAN--CKKFAFVHISFAQFELSQ-GNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHHH--CTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HHHH--hHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 9984 888899999999999997 99999999999999999999999988887654
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.19 E-value=3.2e-08 Score=113.06 Aligned_cols=290 Identities=9% Similarity=-0.045 Sum_probs=185.9
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD 845 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~ 845 (1134)
....|...++..++.+|.+...|...|.+....|+++.|...|++|+...|. ....|...+......|.
T Consensus 48 ~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~--- 116 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD--------FIDGYINLAAALVAAGD--- 116 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHSC---
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc--------hHHHHHHHHHHHHHcCC---
Confidence 4567889999999999999999999999999999999999999999998773 23456666666666554
Q ss_pred CchHHHHHHHHHhc----CCCCCCCCc-c-CCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q 001167 846 PDSSLRAIHVLSCL----GSGSTYTPF-K-CQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN 919 (1134)
Q Consensus 846 ~e~~~rAi~iL~~l----~~~~~~~~~-~-~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~ 919 (1134)
...|+..+... |........ + .-...+....|...|...+... +. ....+...+......+
T Consensus 117 ---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~--~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 117 ---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--------PN--FAVAWSNLGCVFNAQG 183 (388)
T ss_dssp ---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--------TT--CHHHHHHHHHHHHTTT
T ss_pred ---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CC--CHHHHHHHHHHHHHcC
Confidence 23455544221 111000000 0 0001123344555555544221 11 1222334445555567
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCC
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTT 999 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~ 999 (1134)
.++.|+..|++++...+ .....|...+.++.. .+....+...+.+++...|++...+..++......+.
T Consensus 184 ~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDP--------NFLDAYINLGNVLKE---ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp CHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHT---TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 88999999998887532 222344444444332 2345567777888888888888777666666667778
Q ss_pred hhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHH
Q 001167 1000 PNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIF 1078 (1134)
Q Consensus 1000 ~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf 1078 (1134)
.+.+...|++++...| ....|......-... |....|...|++++. ..+.++..|.......... |+++.|...|
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 328 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEK-GSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ-GNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 8888888888887766 345553333332333 677888888888887 4566777777777766664 7888888888
Q ss_pred HHHHHhCCCcHHHHHH
Q 001167 1079 FRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1079 ~RAL~~CPwsK~L~m~ 1094 (1134)
.+++...|.....|..
T Consensus 329 ~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 329 RKALEVFPEFAAAHSN 344 (388)
T ss_dssp HHHTTSCTTCHHHHHH
T ss_pred HHHHhcCCCcHHHHHH
Confidence 8888888877665543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.17 E-value=9.8e-09 Score=119.12 Aligned_cols=290 Identities=9% Similarity=-0.126 Sum_probs=199.4
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|..+++.+++.+|.+...|...|.+....|+++.|..+|++++...|. ....|...+.+....|.
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~- 109 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--------FTAARLQRGHLLLKQGK- 109 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCC-
Confidence 345678889999999999999999999999999999999999999999988762 23566667777776653
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCC---cc-C-----------------CCChhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTP---FK-C-----------------QPSNVQVLRAHQGYMERIKAVRSAWLRGAVSD 902 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~---~~-~-----------------~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~ 902 (1134)
+..|+..+...-...+..+ .. . -........|...|+..+. . ...
T Consensus 110 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~-~~~- 175 (450)
T 2y4t_A 110 -----LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE-------V-CVW- 175 (450)
T ss_dssp -----HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------H-CTT-
T ss_pred -----HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------h-CCC-
Confidence 6678777644311100000 00 0 0000111122222222211 1 111
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC
Q 001167 903 QSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 903 ~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~ 982 (1134)
....+...+......+.++.|+.+|++++...+ .....|...+.+.... +....+...+.+++...|.
T Consensus 176 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 176 -DAELRELRAECFIKEGEPRKAISDLKAASKLKN--------DNTEAFYKISTLYYQL---GDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp -CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--------SCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT
T ss_pred -ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC
Confidence 122333445555667889999999999988642 2234555555555443 5678899999999999999
Q ss_pred CHHHHHHH------------HHHHhhCCChhHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHcCCCchHHHHHHHHHh
Q 001167 983 SPKLFNTL------------VEISNLYTTPNKLRWIFDLYCHKKPS-----LVVSLFALAFEMSRKGPPHRIRGLFERAL 1045 (1134)
Q Consensus 983 N~~ll~~~------------~~lE~~~~~~~raR~il~~~~~~~ps-----~~~wlfaI~~E~~r~g~~~raRalFErAl 1045 (1134)
+..++..+ +......+..+.+..+|++++...|. ...|......-. +.|....|...|++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS-KDEKPVEAIRVCSEVL 322 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 99887655 45555678899999999999988875 223332222322 3388999999999999
Q ss_pred cCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1046 ANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1046 ~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
. ..+.++.+|.......... |+++.|...|.+|+...|.+...|
T Consensus 323 ~--~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 323 Q--MEPDNVNALKDRAEAYLIE-EMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred H--hCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCcchHHHH
Confidence 8 4577889999988888875 999999999999999999987765
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.16 E-value=7.5e-08 Score=106.93 Aligned_cols=291 Identities=9% Similarity=-0.112 Sum_probs=192.5
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|...++.+++.+|++...|...|.+....|+++.|...|++++...|. ....|...+.+....|+
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~- 86 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--------FTAARLQRGHLLLKQGK- 86 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------cchHHHHHHHHHHHcCC-
Confidence 445678899999999999999999999999999999999999999999988762 23566677777776653
Q ss_pred CCCchHHHHHHHHHhc-CCCCC--CCCcc-CC-----------------CChhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 001167 844 SDPDSSLRAIHVLSCL-GSGST--YTPFK-CQ-----------------PSNVQVLRAHQGYMERIKAVRSAWLRGAVSD 902 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l-~~~~~--~~~~~-~~-----------------~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~ 902 (1134)
...|+..+... ...+. ..+.. .. .......+|...|...+ .. ...
T Consensus 87 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~-~~~- 152 (359)
T 3ieg_A 87 -----LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL-------EV-CVW- 152 (359)
T ss_dssp -----HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HH-CTT-
T ss_pred -----hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-------Hh-CCC-
Confidence 66788776533 11110 00000 00 00001111222222211 11 111
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC
Q 001167 903 QSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 903 ~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~ 982 (1134)
....+...+......++++.|...|++++... +.....+...+.+.... +....+...+.+++..+|.
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 153 -DAELRELRAECFIKEGEPRKAISDLKAASKLK--------SDNTEAFYKISTLYYQL---GDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------SCCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTT
T ss_pred -chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCcc
Confidence 12233345555666788999999999887753 22234555555554432 4677888889999999999
Q ss_pred CHHHHHHH------------HHHHhhCCChhHHHHHHHHHHhhCCCH-HHHH----HHHHHHHHcCCCchHHHHHHHHHh
Q 001167 983 SPKLFNTL------------VEISNLYTTPNKLRWIFDLYCHKKPSL-VVSL----FALAFEMSRKGPPHRIRGLFERAL 1045 (1134)
Q Consensus 983 N~~ll~~~------------~~lE~~~~~~~raR~il~~~~~~~ps~-~~wl----faI~~E~~r~g~~~raRalFErAl 1045 (1134)
+...+..+ +......+..+.+..+|++++...|.. ..+. .....-... |....|...|++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD-EKPVEAIRICSEVL 299 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Confidence 98766443 233446788899999999988877742 2221 111222223 78899999999999
Q ss_pred cCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1046 ANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1046 ~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
. ..+.++..|..+....... |+++.|...|.+|+...|.+..++.
T Consensus 300 ~--~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 300 Q--MEPDNVNALKDRAEAYLIE-EMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp H--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred H--hCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChHHHH
Confidence 8 4567788888888887775 8999999999999999998887654
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.15 E-value=2.7e-08 Score=113.64 Aligned_cols=292 Identities=8% Similarity=-0.035 Sum_probs=204.9
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD 845 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~ 845 (1134)
+...|.+.++.+++.+|++...+...+.+....|+++.|...+..++...|. ....|...+......|.
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--------~~~~~~~lg~~~~~~g~--- 82 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--------LAEAYSNLGNVYKERGQ--- 82 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------chHHHHHHHHHHHHCCC---
Confidence 4677888999999999999999999999999999999999999999998773 23466666666666553
Q ss_pred CchHHHHHHHHHhc-CCCCCCCC-ccC----CCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q 001167 846 PDSSLRAIHVLSCL-GSGSTYTP-FKC----QPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN 919 (1134)
Q Consensus 846 ~e~~~rAi~iL~~l-~~~~~~~~-~~~----~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~ 919 (1134)
+..|+..+... ...+.... ... -...+.+..|...|...+.. .++ ....+...+.+....+
T Consensus 83 ---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~--~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 83 ---LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--------NPD--LYCVRSDLGNLLKALG 149 (388)
T ss_dssp ---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTT--CTHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC--cHHHHHHHHHHHHHcc
Confidence 56777665322 10000000 000 00001112334444443321 111 1122234455555568
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCC
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTT 999 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~ 999 (1134)
.++.|..+|++++...+ .....|...+.+.. ..+.+..+...+.+++...|++...|..+..+....+.
T Consensus 150 ~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQP--------NFAVAWSNLGCVFN---AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp CHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 89999999999988632 23344555554443 23567889999999999999999888878888888899
Q ss_pred hhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHH
Q 001167 1000 PNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIF 1078 (1134)
Q Consensus 1000 ~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf 1078 (1134)
.+.+...|.+++...| ....|......-... |....|...|++++. ..+.++..|.......... |+++.|..+|
T Consensus 219 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 294 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ-GLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEK-GSVAEAEDCY 294 (388)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHH-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 9999999999998888 455554333333334 789999999999998 5677888998888887775 9999999999
Q ss_pred HHHHHhCCCcHHHHHHHH
Q 001167 1079 FRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1079 ~RAL~~CPwsK~L~m~a~ 1096 (1134)
.+++..+|.+...|..-.
T Consensus 295 ~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLA 312 (388)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHhhCcccHHHHHHHH
Confidence 999999999887665433
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.10 E-value=3.7e-08 Score=108.43 Aligned_cols=267 Identities=9% Similarity=-0.117 Sum_probs=193.2
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
.+...|.++++.+++.+|.+...+..++.+....|+++.|..+|++++...|. ....|...+.+....++
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~-- 105 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--------NPVSWFAVGCYYLMVGH-- 105 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------STHHHHHHHHHHHHSCS--
T ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------CHHHHHHHHHHHHHhhh--
Confidence 45778999999999999999999999999999999999999999999987763 23456665655555541
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHH
Q 001167 845 DPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAG 924 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A 924 (1134)
....|+..+...-.. .| .....+...+......++++.|
T Consensus 106 ---~~~~A~~~~~~a~~~---~~-----------------------------------~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 106 ---KNEHARRYLSKATTL---EK-----------------------------------TYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp ---CHHHHHHHHHHHHTT---CT-----------------------------------TCTHHHHHHHHHHHHHTCHHHH
T ss_pred ---hHHHHHHHHHHHHHh---CC-----------------------------------ccHHHHHHHHHHHHHccCHHHH
Confidence 245566555322100 00 0011122444555667899999
Q ss_pred HHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHH
Q 001167 925 IEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLR 1004 (1134)
Q Consensus 925 ~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR 1004 (1134)
+..|++++...+.. ...+...+.+... .+.+..+...+.+++..+|.+...+..++.+....+.++.+.
T Consensus 145 ~~~~~~a~~~~~~~--------~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 145 MAAYFTAAQLMKGC--------HLPMLYIGLEYGL---TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp HHHHHHHHHHTTTC--------SHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccc--------HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH
Confidence 99999999875321 2233334444332 356788999999999999999998888888888889999999
Q ss_pred HHHHHHHhhC---------C-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 1005 WIFDLYCHKK---------P-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 1005 ~il~~~~~~~---------p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
.+|++++... + ....|......-... |....|...|++++. ..+.++..|.......... |+++.|
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~-g~~~~A 289 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-KKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLM-GNFENA 289 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHH-TCHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHh-ccHHHH
Confidence 9999988753 2 234453333333334 789999999999998 4566788888888877775 999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHH
Q 001167 1075 RRIFFRAIHACPWSKRLWLDGFL 1097 (1134)
Q Consensus 1075 R~Vf~RAL~~CPwsK~L~m~a~~ 1097 (1134)
...|.+|+..+|.+...|..-..
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHccCCCchHHHHHHHH
Confidence 99999999999988876654333
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.07 E-value=2e-07 Score=110.58 Aligned_cols=294 Identities=11% Similarity=0.052 Sum_probs=198.3
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+.+.|.+.++..|+.+|++...|...|.+....|+++.|.+.|++++...|. ....|...+.+....|+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~- 108 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--------HSKALLRRASANESLGN- 108 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTC-
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHHHHcCC-
Confidence 456889999999999999999999999999999999999999999999998873 23455666666665543
Q ss_pred CCCchHHHHHHHHHhcCCCCCCC-----------------------------------Cc--------------------
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYT-----------------------------------PF-------------------- 868 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~-----------------------------------~~-------------------- 868 (1134)
...|+..+..+...+.+. |.
T Consensus 109 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 -----FTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp -----HHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred -----HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 445555443221110000 00
Q ss_pred ---c-C---------------CCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchH-----HHHHHHHHHHHHHhcCHHHH
Q 001167 869 ---K-C---------------QPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQS-----IALICSAALFEELTNGWTAG 924 (1134)
Q Consensus 869 ---~-~---------------~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~-----v~l~~~~Alfe~Lt~~~~~A 924 (1134)
. . ..+...+..+...|.+++......+. ..+.+.. ...+...+.+.+..++++.|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-ANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 0 0 00112222222233333322211111 1111111 11233445566667889999
Q ss_pred HHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHH
Q 001167 925 IEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLR 1004 (1134)
Q Consensus 925 ~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR 1004 (1134)
+..|++++... +. ...+...+.+. ...+....+...+.+++..+|.+...|..++.+....+..+.+.
T Consensus 263 ~~~~~~~~~~~--------~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 263 QVLLQESINLH--------PT-PNSYIFLALTL---ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHHHHHHHC--------CC-HHHHHHHHHHT---CCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcC--------CC-chHHHHHHHHH---HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999998853 23 33444444433 33456788999999999999999998888888878889999999
Q ss_pred HHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHH
Q 001167 1005 WIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIH 1083 (1134)
Q Consensus 1005 ~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~ 1083 (1134)
..|++++...| ....|......-... |....|...|++++. ..+.++.+|..+....... |+++.|...|.+|+.
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQ-GKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDR-GDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 99999998877 345554333333334 889999999999998 4577788899888888875 999999999999999
Q ss_pred hCCCc
Q 001167 1084 ACPWS 1088 (1134)
Q Consensus 1084 ~CPws 1088 (1134)
.+|..
T Consensus 407 ~~~~~ 411 (537)
T 3fp2_A 407 LEEVQ 411 (537)
T ss_dssp HHHHC
T ss_pred cCCcc
Confidence 88754
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.06 E-value=8.8e-08 Score=115.57 Aligned_cols=263 Identities=9% Similarity=-0.093 Sum_probs=195.4
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
.+...|.++++.+++.+|.+...|..++.+....|+++.|..+|+.++...|. ...+|...+.+....|.
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~-- 388 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE--------KAVTWLAVGIYYLCVNK-- 388 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------SHHHHHHHHHHHHHTTC--
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc--------cHHHHHHHHHHHHHhcc--
Confidence 34677888999999999999999999999999999999999999999876652 23455555666555542
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHH
Q 001167 845 DPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAG 924 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A 924 (1134)
++.|+.++ ++.+... ...+..+...+......+.++.|
T Consensus 389 ----~~~A~~~~----------------------------~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 389 ----ISEARRYF----------------------------SKSSTMD----------PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp ----HHHHHHHH----------------------------HHHHHHC----------TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred ----HHHHHHHH----------------------------HHHHHhC----------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44555444 3322110 01112233444555557889999
Q ss_pred HHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHH
Q 001167 925 IEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLR 1004 (1134)
Q Consensus 925 ~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR 1004 (1134)
+.+|++++...+. ....|...+...... +.+..+...+.+++..+|.+...|..++......+..+.+.
T Consensus 427 ~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 427 ISAYTTAARLFQG--------THLPYLFLGMQHMQL---GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI 495 (597)
T ss_dssp HHHHHHHHHTTTT--------CSHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCcc--------chHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 9999999875432 223444444444333 56888999999999999999999988888888899999999
Q ss_pred HHHHHHHhh------CCC--HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 1005 WIFDLYCHK------KPS--LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 1005 ~il~~~~~~------~ps--~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
.+|++++.. .|. ...|...+..-... |....|..+|++++. ..+.++..|.......... |+++.|..
T Consensus 496 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~-g~~~~A~~ 571 (597)
T 2xpi_A 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHK-KIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHh-CCHHHHHH
Confidence 999998876 454 56665444443344 899999999999998 4577899999999988875 99999999
Q ss_pred HHHHHHHhCCCcHHHHHH
Q 001167 1077 IFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1077 Vf~RAL~~CPwsK~L~m~ 1094 (1134)
+|.+++...|.+...|..
T Consensus 572 ~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 572 HLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCChHHHHH
Confidence 999999999998876643
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.99 E-value=4.5e-07 Score=105.04 Aligned_cols=261 Identities=10% Similarity=-0.057 Sum_probs=157.5
Q ss_pred CChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCc
Q 001167 768 TPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPD 847 (1134)
Q Consensus 768 k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e 847 (1134)
..+......++..+|.+...|...|......|+++.|..+|+.++...|. ....|...+.+....++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~g~----- 75 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------NYIAYYRRATVFLAMGK----- 75 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC-----
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHCCC-----
Confidence 34455667788889999999999999999999999999999999988762 23566666666666543
Q ss_pred hHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 001167 848 SSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEV 927 (1134)
Q Consensus 848 ~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v 927 (1134)
...|+..+... +... . .....+...+......+.++.|+.+
T Consensus 76 -~~~A~~~~~~a----------------------------l~~~--------p--~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 76 -SKAALPDLTKV----------------------------IQLK--------M--DFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp -HHHHHHHHHHH----------------------------HHHC--------T--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -HHHHHHHHHHH----------------------------HhcC--------C--CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55666554321 1100 0 0011122334444456778888888
Q ss_pred HHHHHHhhcCccccCCccHH---HHHHHHHHH---------HHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001167 928 LHQAFAMVLPERRSCSHQLE---FLFNFNVRM---------LQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISN 995 (1134)
Q Consensus 928 ~~~al~~~~~~~~~~~~~~E---~L~~~~a~l---------l~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~ 995 (1134)
|++++...+ ... ..|...+.+ -..+...+....+...+.+++...|.+...+..++.+..
T Consensus 117 ~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 117 FKKVLKSNP--------SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHTSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCC--------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 888876432 111 222211111 001112245667777888888888888777776666666
Q ss_pred hCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHH------------HH
Q 001167 996 LYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWY------------IA 1062 (1134)
Q Consensus 996 ~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~Y------------I~ 1062 (1134)
..+..+.+..+|.+++...| ....|...+..-... |....|...|++++. ..+.+...|..+ ..
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL-GDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888776655 455554333333333 677888888888876 455667777665 44
Q ss_pred hHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1063 YEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1063 fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
..... |+++.|..+|.+++...|.+..++
T Consensus 266 ~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 266 ELIRD-GRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHhcCCcchHHH
Confidence 44543 778888888888888888765533
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.94 E-value=3e-07 Score=110.81 Aligned_cols=283 Identities=6% Similarity=-0.160 Sum_probs=194.9
Q ss_pred ChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCch
Q 001167 769 PCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDS 848 (1134)
Q Consensus 769 ~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~ 848 (1134)
.|.++.+.+++. +.+...|...|.+....|+++.|.++|+.++...|.. ...|...+.+....|.
T Consensus 290 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~------ 354 (597)
T 2xpi_A 290 RAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN--------LDVYPLHLASLHESGE------ 354 (597)
T ss_dssp HHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------CTTHHHHHHHHHHHTC------
T ss_pred HHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc--------HHHHHHHHHHHHHhCC------
Confidence 345555555554 6789999999999999999999999999999877621 1234444444444432
Q ss_pred HHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001167 849 SLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVL 928 (1134)
Q Consensus 849 ~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~ 928 (1134)
...|+.++ ...+... .. ....+...+......+.++.|+.+|
T Consensus 355 ~~~A~~~~----------------------------~~~~~~~--------~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 355 KNKLYLIS----------------------------NDLVDRH--------PE--KAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HHHHHHHH----------------------------HHHHHHC--------TT--SHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHHHhhC--------cc--cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44455443 2222110 00 1122223344445568899999999
Q ss_pred HHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHH
Q 001167 929 HQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFD 1008 (1134)
Q Consensus 929 ~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~ 1008 (1134)
++++...+ .....|...+.++... +....+...+.+++...|.+...|..++......+..+.+..+|+
T Consensus 397 ~~~~~~~~--------~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 397 SKSSTMDP--------QFGPAWIGFAHSFAIE---GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp HHHHHHCT--------TCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCC--------CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99987532 2234555555555443 467889999999999999998888878787778899999999999
Q ss_pred HHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcC----CCCCCC-HHHHHHHHHhHHHhcCCHHHHHHHHHHHH
Q 001167 1009 LYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALAN----DTVRCS-VVLWRWYIAYEVYIASNPFAARRIFFRAI 1082 (1134)
Q Consensus 1009 ~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s----~~~~~s-~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL 1082 (1134)
+++...| ....|...+..-... |....|..+|++++.. ...+.. ..+|...+...... |+++.|..+|.+++
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 9998877 466675444444444 8999999999999974 123433 78999999888875 99999999999999
Q ss_pred HhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1083 HACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1083 ~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
...|.+...|..-...+...=..++=.++++-+.+
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99998877775544433222234555555554443
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.90 E-value=8.7e-07 Score=104.06 Aligned_cols=168 Identities=9% Similarity=0.029 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH
Q 001167 906 ALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK 985 (1134)
Q Consensus 906 ~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ 985 (1134)
..+...+...+..++++.|+..|++++... +. ...+...+.+... .+.+..+...+.+++...|.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~-~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 305 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--------PR-VNSYIYMALIMAD---RNDSTEYYNYFDKALKLDSNNSS 305 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHT---SSCCTTGGGHHHHHHTTCTTCTH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------cc-HHHHHHHHHHHHH---CCCHHHHHHHHHHHhhcCcCCHH
Confidence 334455666677789999999999998863 23 4455555554433 24556678889999999999998
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhH
Q 001167 986 LFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYE 1064 (1134)
Q Consensus 986 ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE 1064 (1134)
.+..++.+....+..+.+...|++++...| ....|......-... |....|...|++++. ..+.++.+|..+....
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE-NKFDDCETLFSEAKR--KFPEAPEVPNFFAEIL 382 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT-TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--HcccCHHHHHHHHHHH
Confidence 888788887788999999999999998877 344554333332333 789999999999998 4566778888888877
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcH
Q 001167 1065 VYIASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1065 ~~~~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
... |+++.|...|.+++...|...
T Consensus 383 ~~~-~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 383 TDK-NDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHTSS
T ss_pred HHC-CCHHHHHHHHHHHHHhhhccc
Confidence 775 999999999999999988764
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.90 E-value=3.6e-06 Score=93.26 Aligned_cols=248 Identities=11% Similarity=-0.057 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCC
Q 001167 784 DVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGS 863 (1134)
Q Consensus 784 nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~ 863 (1134)
+...|...|......|+++.|..+|+.++...|. ....|...+.+....|+ ...|+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~~~------~~~A~~~~~~~---- 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------NYIAYYRRATVFLAMGK------SKAALPDLTKV---- 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTC------HHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--------cHHHHHHHHHHHHHccC------HHHHHHHHHHH----
Confidence 5678899999999999999999999999998773 23466666666666543 55666554221
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCC
Q 001167 864 TYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCS 943 (1134)
Q Consensus 864 ~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~ 943 (1134)
+... +.....+...+...+..++++.|+..|++++...+...
T Consensus 64 ------------------------~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 105 (359)
T 3ieg_A 64 ------------------------IALK----------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ---- 105 (359)
T ss_dssp ------------------------HHHC----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH----
T ss_pred ------------------------HHhC----------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc----
Confidence 1100 00011222344455556788888888888876432000
Q ss_pred ccHHHHHHHH------------HHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 001167 944 HQLEFLFNFN------------VRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYC 1011 (1134)
Q Consensus 944 ~~~E~L~~~~------------a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~ 1011 (1134)
.....+... +..+ ...+....+...+.+++...|.+...+..++.+....+..+.+...|.+++
T Consensus 106 -~~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 181 (359)
T 3ieg_A 106 -EEKEAESQLVKADEMQRLRSQALDA---FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181 (359)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 112222222 2222 223456777788888888888888777766666667778888888888887
Q ss_pred hhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHH------------hHHHhcCCHHHHHHHH
Q 001167 1012 HKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIA------------YEVYIASNPFAARRIF 1078 (1134)
Q Consensus 1012 ~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~------------fE~~~~~n~~rAR~Vf 1078 (1134)
...| ....|.......... |....|...|++++. ..+.+...|..|.. ..... |+++.|..+|
T Consensus 182 ~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~ 257 (359)
T 3ieg_A 182 KLKSDNTEAFYKISTLYYQL-GDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKY 257 (359)
T ss_dssp TTCSCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7766 445554333333333 677788888888876 45566666665532 23333 7777777788
Q ss_pred HHHHHhCCCcHHHHHHH
Q 001167 1079 FRAIHACPWSKRLWLDG 1095 (1134)
Q Consensus 1079 ~RAL~~CPwsK~L~m~a 1095 (1134)
.+++...|.+..++..+
T Consensus 258 ~~~~~~~~~~~~~~~~~ 274 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRS 274 (359)
T ss_dssp HHHHHHCCSSHHHHHHH
T ss_pred HHHHhcCCCchHHHHHH
Confidence 88887777776554443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.88 E-value=2.9e-07 Score=103.91 Aligned_cols=246 Identities=13% Similarity=-0.041 Sum_probs=170.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCC
Q 001167 784 DVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGS 863 (1134)
Q Consensus 784 nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~ 863 (1134)
+...|...|......|+++.|..+|++++...|. ....|...+.+....|+ +..|+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~------~~~A~~~~~------ 123 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--------DAEAWQFLGITQAENEN------EQAAIVALQ------ 123 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC------HHHHHHHHH------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------CHHHHHHHHHHHHHCCC------HHHHHHHHH------
Confidence 3445889999999999999999999999998872 24566666766666543 556655542
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccC-
Q 001167 864 TYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSC- 942 (1134)
Q Consensus 864 ~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~- 942 (1134)
..+... . .....+...+......++++.|+..|++++...+......
T Consensus 124 ----------------------~al~~~--------p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (365)
T 4eqf_A 124 ----------------------RCLELQ--------P--NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVK 171 (365)
T ss_dssp ----------------------HHHHHC--------T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--
T ss_pred ----------------------HHHhcC--------C--CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHh
Confidence 222110 0 0112223445555667899999999999998643210000
Q ss_pred Cc-cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHH
Q 001167 943 SH-QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY--SPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLV 1018 (1134)
Q Consensus 943 ~~-~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~--N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~ 1018 (1134)
.. ....++...+.++. ..+.+..+...+.+++...|. +...|..++.+....+..+.+..+|++++...| ...
T Consensus 172 ~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPV---DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhccchHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 00 00111111122221 223467899999999999999 888888777777788999999999999999887 566
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1019 VSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1019 ~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
.|......-... |....|...|++|+. ..+.++..|.......... |+++.|...|.+|+..+|..
T Consensus 249 ~~~~l~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 249 LWNRLGATLANG-DRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINL-GAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCccc
Confidence 675444444444 899999999999998 5677889999888888875 99999999999999999874
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.86 E-value=1.2e-07 Score=104.04 Aligned_cols=269 Identities=10% Similarity=-0.010 Sum_probs=184.4
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
.+...|..+++.+++.+|.+...|...|.+....|+++.|.+.|++++...|. ....|...+.+....++
T Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~~~-- 104 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--------DIAVHAALAVSHTNEHN-- 104 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC--
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--------CHHHHHHHHHHHHHcCC--
Confidence 34677888999999999999999999999999999999999999999998762 23466666777666653
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHH-HHHHhcCHHH
Q 001167 845 DPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAAL-FEELTNGWTA 923 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Al-fe~Lt~~~~~ 923 (1134)
...|+..+...-.. .|..... ...+. ... . ....... ..+. .....++++.
T Consensus 105 ----~~~A~~~~~~~~~~---~~~~~~~-~~~~~-------~~~-------~-----~~~~~~~-~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 105 ----ANAALASLRAWLLS---QPQYEQL-GSVNL-------QAD-------V-----DIDDLNV-QSEDFFFAAPNEYRE 156 (327)
T ss_dssp ----HHHHHHHHHHHHHT---STTTTTC-----------------------------------------CCTTSHHHHHH
T ss_pred ----HHHHHHHHHHHHHh---CCccHHH-HHHHh-------HHH-------H-----HHHHHHH-HHHhHHHHHcccHHH
Confidence 66777766432110 0000000 00000 000 0 0000000 0011 1222356889
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHH
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKL 1003 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~ra 1003 (1134)
|+..|++++...+ ....++...+.+... .+....+...+.+++...|.+...|..++.+....+..+.+
T Consensus 157 A~~~~~~~~~~~~--------~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 157 CRTLLHAALEMNP--------NDAQLHASLGVLYNL---SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp HHHHHHHHHHHST--------TCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhCC--------CCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999887632 223455555555433 35678899999999999999998888788877788999999
Q ss_pred HHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCC------------CHHHHHHHHHhHHHhcCC
Q 001167 1004 RWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRC------------SVVLWRWYIAYEVYIASN 1070 (1134)
Q Consensus 1004 R~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~------------s~~LWr~YI~fE~~~~~n 1070 (1134)
...|++++...| ....|.......... |....|...|++++.. .+. ....|.......... |+
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 301 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVM-NR 301 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhc-CC
Confidence 999999998877 456665444444444 7899999999999973 333 578888888887775 99
Q ss_pred HHHHHHHHHHHHHhCC
Q 001167 1071 PFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1071 ~~rAR~Vf~RAL~~CP 1086 (1134)
.+.|..++.+++..+|
T Consensus 302 ~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 302 PDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998888765
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.85 E-value=3.4e-07 Score=102.84 Aligned_cols=271 Identities=9% Similarity=-0.085 Sum_probs=186.6
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCC
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGS 844 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~ 844 (1134)
.+...|..+++..++.+|.+...|...|.+....|+++.|...|++|+...|. ....|...+.+....|+
T Consensus 78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~g~-- 147 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD--------NQTALMALAVSFTNESL-- 147 (368)
T ss_dssp TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCC--
Confidence 35678899999999999999999999999999999999999999999998873 23566777777777653
Q ss_pred CCchHHHHHHHHHhc-CCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 845 DPDSSLRAIHVLSCL-GSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 845 ~~e~~~rAi~iL~~l-~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
...|+..+... ...+. .+.. ......+ . ... . .. .. ....+.+. ..++++.
T Consensus 148 ----~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~-~------~~~-~---------~~---~~-~~~~~~~~-~~~~~~~ 199 (368)
T 1fch_A 148 ----QRQACEILRDWLRYTPA-YAHL-VTPAEEG-A------GGA-G---------LG---PS-KRILGSLL-SDSLFLE 199 (368)
T ss_dssp ----HHHHHHHHHHHHHTSTT-TGGG-CC------------------------------------CTTHHHH-HHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCcC-cHHH-HHHHHHH-h------hhh-c---------cc---HH-HHHHHHHh-hcccHHH
Confidence 66777776432 11110 0000 0000000 0 000 0 00 00 00111111 4577999
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHH
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKL 1003 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~ra 1003 (1134)
|+..|++++...+.. ....++...+.+... .+....+...+.+++...|.+...|..++.+....+..+.+
T Consensus 200 A~~~~~~a~~~~p~~------~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 200 VKELFLAAVRLDPTS------IDPDVQCGLGVLFNL---SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHSTTS------CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcCc------ccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999998864321 023455555555433 35688899999999999999998888788887888999999
Q ss_pred HHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC---------CCCHHHHHHHHHhHHHhcCCHHH
Q 001167 1004 RWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTV---------RCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 1004 R~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~---------~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
...|++++...| ....|......-... |....|...|++|+..... +....+|..+....... |+.+.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 348 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML-GQSDA 348 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH-TCGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh-CChHh
Confidence 999999998877 455564433333344 7899999999999973211 12378999998888875 99999
Q ss_pred HHHHHHHHHHh
Q 001167 1074 ARRIFFRAIHA 1084 (1134)
Q Consensus 1074 AR~Vf~RAL~~ 1084 (1134)
|..++.+++..
T Consensus 349 A~~~~~~~l~~ 359 (368)
T 1fch_A 349 YGAADARDLST 359 (368)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHhHHHHHHH
Confidence 99999888875
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.84 E-value=4.1e-07 Score=102.70 Aligned_cols=265 Identities=11% Similarity=-0.071 Sum_probs=180.4
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD 845 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~ 845 (1134)
+...|..+++..|+.+|++...|...|.+....|+++.|.++|++|+...|. ....|...+.+....|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~--- 148 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------NLKALMALAVSYTNTSH--- 148 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHcccc---
Confidence 4677899999999999999999999999999999999999999999998772 23566666777666653
Q ss_pred CchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCc-hHHHHHHHHHHHHHHhcCHHHH
Q 001167 846 PDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSD-QSIALICSAALFEELTNGWTAG 924 (1134)
Q Consensus 846 ~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~-~~v~l~~~~Alfe~Lt~~~~~A 924 (1134)
+..|+..+... +...... ....... ....+....+......+.++.|
T Consensus 149 ---~~~A~~~~~~a----------------------------l~~~p~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 149 ---QQDACEALKNW----------------------------IKQNPKY-KYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp ---HHHHHHHHHHH----------------------------HHHCHHH-HCC-------------------CCHHHHHH
T ss_pred ---HHHHHHHHHHH----------------------------HHhCccc-hHHHhhhccchHHHHHHHHHHhhhhhHHHH
Confidence 55666655322 1000000 0000000 0001111223333445679999
Q ss_pred HHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHH
Q 001167 925 IEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLR 1004 (1134)
Q Consensus 925 ~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR 1004 (1134)
+..|++++...+.. ....++...+.++... +....+...+.+++...|.+...|..++......+..+.+.
T Consensus 197 ~~~~~~al~~~p~~------~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 197 KELYLEAAHQNGDM------IDPDLQTGLGVLFHLS---GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp HHHHHHHHHHSCSS------CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCcCc------cCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999864321 1234555555555433 56888999999999999999999988888888889999999
Q ss_pred HHHHHHHhhCCC-HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC----------CCCHHHHHHHHHhHHHhcCCHHH
Q 001167 1005 WIFDLYCHKKPS-LVVSLFALAFEMSRKGPPHRIRGLFERALANDTV----------RCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 1005 ~il~~~~~~~ps-~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~----------~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
..|++++..+|. ...|.......... |....|+..|++|+...+. ..+..+|.......... |..+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 345 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINL-GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM-DQPEL 345 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH-TCHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc-CcHHH
Confidence 999999998884 56664444443444 7899999999999973211 12467888888777665 88888
Q ss_pred HHHHHHHHHHh
Q 001167 1074 ARRIFFRAIHA 1084 (1134)
Q Consensus 1074 AR~Vf~RAL~~ 1084 (1134)
|+.+..+++..
T Consensus 346 a~~~~~~~l~~ 356 (365)
T 4eqf_A 346 FQAANLGDLDV 356 (365)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHHhhHHH
Confidence 87776665443
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.80 E-value=1.2e-06 Score=96.20 Aligned_cols=254 Identities=8% Similarity=-0.086 Sum_probs=172.8
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 001167 776 GLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHV 855 (1134)
Q Consensus 776 ~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~i 855 (1134)
..++..+.+..++...|......|+++.|.++|++++...|.. ...+..++......+. ...|+..
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------~~~~~~~~~~~~~~~~------~~~A~~~ 78 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH--------ASCLPVHIGTLVELNK------ANELFYL 78 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------TTTHHHHHHHHHHHTC------HHHHHHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------hhhHHHHHHHHHHhhh------HHHHHHH
Confidence 5566678888899999999999999999999999999887732 1223333333333332 4455554
Q ss_pred HHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 001167 856 LSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN-GWTAGIEVLHQAFAM 934 (1134)
Q Consensus 856 L~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~-~~~~A~~v~~~al~~ 934 (1134)
+.. .+... ... ...+...+...+..+ .++.|...|++++..
T Consensus 79 ~~~----------------------------~~~~~--------~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 120 (330)
T 3hym_B 79 SHK----------------------------LVDLY--------PSN--PVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120 (330)
T ss_dssp HHH----------------------------HHHHC--------TTS--THHHHHHHHHHHHSCSCHHHHHHHHHHHHTT
T ss_pred HHH----------------------------HHHhC--------cCC--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 422 11110 000 112223445555667 899999999999875
Q ss_pred hcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhC
Q 001167 935 VLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKK 1014 (1134)
Q Consensus 935 ~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ 1014 (1134)
.+ .....|...+.++... +....+...+.+++..+|.+...+..++......+..+.+..+|.+++...
T Consensus 121 ~~--------~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 121 EK--------TYGPAWIAYGHSFAVE---SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp CT--------TCTHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CC--------ccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 32 2233455555555433 467889999999999999998777767777778899999999999999888
Q ss_pred C-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC-------CCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCC
Q 001167 1015 P-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDT-------VRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1015 p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~-------~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
| ....|......-... |....|...|++++.... .+..+.+|.......... |+++.|...|.+++...|
T Consensus 190 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 190 PEDPFVMHEVGVVAFQN-GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-KKYAEALDYHRQALVLIP 267 (330)
T ss_dssp TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST
T ss_pred CCChHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhCc
Confidence 7 455554333333344 789999999999997321 144567888888777775 999999999999999999
Q ss_pred CcHHHHHH
Q 001167 1087 WSKRLWLD 1094 (1134)
Q Consensus 1087 wsK~L~m~ 1094 (1134)
.....|..
T Consensus 268 ~~~~~~~~ 275 (330)
T 3hym_B 268 QNASTYSA 275 (330)
T ss_dssp TCSHHHHH
T ss_pred cchHHHHH
Confidence 87665543
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.72 E-value=4.8e-06 Score=93.37 Aligned_cols=256 Identities=13% Similarity=-0.001 Sum_probs=174.1
Q ss_pred HHHHHhhhcCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCch
Q 001167 773 LAKGLLKSDRQD----VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDS 848 (1134)
Q Consensus 773 ~aK~LLk~~~~n----l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~ 848 (1134)
..+..++..|.+ ...|...|......|+++.|..+|++++...|. ....|...+.+....|+
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~------ 113 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--------HMEAWQYLGTTQAENEQ------ 113 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--------CHHHHHHHHHHHHHTTC------
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCcC------
Confidence 444444444444 456788899999999999999999999988762 23456665666555543
Q ss_pred HHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001167 849 SLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVL 928 (1134)
Q Consensus 849 ~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~ 928 (1134)
+..|+..+. ..+... . .....+...+......++++.|+..|
T Consensus 114 ~~~A~~~~~----------------------------~al~~~--------~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 114 ELLAISALR----------------------------RCLELK--------P--DNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp HHHHHHHHH----------------------------HHHHHC--------T--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH----------------------------HHHhcC--------C--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555442 221110 0 01122234455556678899999999
Q ss_pred HHHHHhhcCccccCCc--------cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhhCC
Q 001167 929 HQAFAMVLPERRSCSH--------QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY--SPKLFNTLVEISNLYT 998 (1134)
Q Consensus 929 ~~al~~~~~~~~~~~~--------~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~--N~~ll~~~~~lE~~~~ 998 (1134)
++++...+........ .....+.....++ . .+.+..+...+.+++...|. +...+..++.+....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S---DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHTSTTTGGGCC---------------CTTHHHH-H---HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h---cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 9999865432110000 0000000111111 1 13456788999999999999 7888877777777889
Q ss_pred ChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHH
Q 001167 999 TPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRI 1077 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~V 1077 (1134)
..+.+...|.+++...| ....|......-... |....|...|++|+. ..+.++..|.......... |+++.|...
T Consensus 232 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~-g~~~~A~~~ 307 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINL-GAHREAVEH 307 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 99999999999998877 456664444333344 899999999999998 4567888888888888875 999999999
Q ss_pred HHHHHHhCCCc
Q 001167 1078 FFRAIHACPWS 1088 (1134)
Q Consensus 1078 f~RAL~~CPws 1088 (1134)
|.+|+..+|.+
T Consensus 308 ~~~al~~~~~~ 318 (368)
T 1fch_A 308 FLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHhCCCC
Confidence 99999999987
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.71 E-value=8.6e-07 Score=104.07 Aligned_cols=244 Identities=9% Similarity=-0.042 Sum_probs=174.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc-C
Q 001167 782 RQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL-G 860 (1134)
Q Consensus 782 ~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l-~ 860 (1134)
|.+...|...|.+....|+++.|..+|++++...|. ...|...+.+....++.. .|+..+... .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~ 298 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---------VNSYIYMALIMADRNDST------EYYNYFDKALK 298 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHTSSCCT------TGGGHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---------HHHHHHHHHHHHHCCCHH------HHHHHHHHHhh
Confidence 556788999999999999999999999999998772 456666666666655422 333333211 0
Q ss_pred CCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccc
Q 001167 861 SGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERR 940 (1134)
Q Consensus 861 ~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~ 940 (1134)
.. | .. ...+...+...+..++++.|+..|++++...+.
T Consensus 299 ~~----~---------------------------------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 336 (514)
T 2gw1_A 299 LD----S---------------------------------NN--SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE--- 336 (514)
T ss_dssp TC----T---------------------------------TC--THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---
T ss_pred cC----c---------------------------------CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---
Confidence 00 0 00 011123344455568899999999999886422
Q ss_pred cCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----
Q 001167 941 SCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS---- 1016 (1134)
Q Consensus 941 ~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps---- 1016 (1134)
....+...+.+. ...+....+...+.+++..+|.+...|..++......+..+.+..+|.+++...|.
T Consensus 337 -----~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 337 -----NIFPYIQLACLA---YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp -----CSHHHHHHHHHT---TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred -----hHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 122444444433 23356888999999999999999988877778778889999999999998876542
Q ss_pred ---HHHHHHHHHHHHHc--CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1017 ---LVVSLFALAFEMSR--KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1017 ---~~~wlfaI~~E~~r--~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
...|......-..+ .|....|...|++++. ..+.++..|.......... |+++.|...|.+|+...|.+...
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQ-EDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhccccHHH
Confidence 22554333333340 3789999999999998 4577888998888888875 99999999999999999998876
Q ss_pred HH
Q 001167 1092 WL 1093 (1134)
Q Consensus 1092 ~m 1093 (1134)
|.
T Consensus 486 ~~ 487 (514)
T 2gw1_A 486 LQ 487 (514)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.67 E-value=1e-05 Score=88.64 Aligned_cols=246 Identities=13% Similarity=-0.035 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCC
Q 001167 784 DVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGS 863 (1134)
Q Consensus 784 nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~ 863 (1134)
+...|...|......|+++.|..+|+.++...|. ....|...+.+....++ ...|+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~------~~~A~~~~~------ 79 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE--------REEAWRSLGLTQAENEK------DGLAIIALN------ 79 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC------HHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCC------HHHHHHHHH------
Confidence 3445677788889999999999999999998762 23455555666555543 445555442
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCC
Q 001167 864 TYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCS 943 (1134)
Q Consensus 864 ~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~ 943 (1134)
..+... . .....+...+......++++.|+..|++++...+.......
T Consensus 80 ----------------------~a~~~~--------~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 127 (327)
T 3cv0_A 80 ----------------------HARMLD--------P--KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127 (327)
T ss_dssp ----------------------HHHHHC--------T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--
T ss_pred ----------------------HHHhcC--------c--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 221110 0 01112223445556678899999999999886432210000
Q ss_pred cc------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-C
Q 001167 944 HQ------LEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-S 1016 (1134)
Q Consensus 944 ~~------~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s 1016 (1134)
.. ....+...+.++ ....+....+...+.+++...|.+...+..++.+....+..+.+..++.+++...| .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 128 VNLQADVDIDDLNVQSEDFF--FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205 (327)
T ss_dssp ------------------CC--TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhHHHHHHHHHHHHHHhHH--HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 00 000000001100 11123456788999999999999998888788887888999999999999998887 4
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1017 LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1017 ~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
...|......-... |....|...|++++. ..+.+...|.......... |+++.|...|.+++...|.
T Consensus 206 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 206 AQLWNKLGATLANG-NRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCc
Confidence 56664444443344 789999999999998 4567888898888888875 9999999999999999998
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.65 E-value=2.6e-06 Score=100.92 Aligned_cols=257 Identities=11% Similarity=-0.024 Sum_probs=176.4
Q ss_pred CChHHHHHHHhhhcCCCHHHH-------HHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhc
Q 001167 768 TPCQPLAKGLLKSDRQDVLLC-------GVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSS 840 (1134)
Q Consensus 768 k~aRk~aK~LLk~~~~nl~LW-------~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~ 840 (1134)
..|..+++.+++.+|++..+| ...+.+....|+++.|.+.|++++...|. ...|...+.+....
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---------PNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---------chHHHHHHHHHHHh
Confidence 457788889999999987764 44456777899999999999999998772 23444444443333
Q ss_pred CCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcC
Q 001167 841 NSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNG 920 (1134)
Q Consensus 841 ~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~ 920 (1134)
+ ....|+..+ ...+... . .....+...+......++
T Consensus 290 ~------~~~~A~~~~----------------------------~~~~~~~--------~--~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 290 E------NSQEFFKFF----------------------------QKAVDLN--------P--EYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp S------CCHHHHHHH----------------------------HHHHHHC--------T--TCHHHHHHHHHHHHHTTC
T ss_pred c------CHHHHHHHH----------------------------HHHhccC--------C--CCHHHHHHHHHHHHhcCC
Confidence 2 134555444 2222110 0 011223344555666789
Q ss_pred HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCCh
Q 001167 921 WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTP 1000 (1134)
Q Consensus 921 ~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~ 1000 (1134)
++.|+..|++++...+. ....|...+.++.. .+....+...+.+++..+|.+...+..++.+....+..
T Consensus 326 ~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPE--------NVYPYIQLACLLYK---QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHHHHHHHCTT--------CSHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 99999999999986432 12345555555543 35688899999999999999998888888888888999
Q ss_pred hHHHHHHHHHHhhCCC-------HHHH-HHH-HHHHHHcC-------CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhH
Q 001167 1001 NKLRWIFDLYCHKKPS-------LVVS-LFA-LAFEMSRK-------GPPHRIRGLFERALANDTVRCSVVLWRWYIAYE 1064 (1134)
Q Consensus 1001 ~raR~il~~~~~~~ps-------~~~w-lfa-I~~E~~r~-------g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE 1064 (1134)
+.+...|++++...|. ...+ ..+ +....... |....|...|++++. ..+.++..|.......
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 9999999998876441 1111 111 22222000 567899999999998 4567888998888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1065 VYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1065 ~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
... |+++.|...|.+|+..+|....+
T Consensus 473 ~~~-g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 473 LQM-EKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHT-TCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHh-ccHHHHHHHHHHHHHhCCCcHHH
Confidence 875 99999999999999999988765
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.7e-05 Score=80.96 Aligned_cols=240 Identities=8% Similarity=-0.129 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCC
Q 001167 785 VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGST 864 (1134)
Q Consensus 785 l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~ 864 (1134)
...|...|......|+++.|..+|++++... .. ...|...+.+....++ ...|+..+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~------~~~A~~~~~~a----- 64 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGE------YETAISTLNDA----- 64 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTC------HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHccc------HHHHHHHHHHH-----
Confidence 4567788888889999999999999998865 21 2455555666555543 55665554221
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCc
Q 001167 865 YTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSH 944 (1134)
Q Consensus 865 ~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~ 944 (1134)
+...... ..........+...+......++++.|+..|++++...+
T Consensus 65 -----------------------~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------- 110 (258)
T 3uq3_A 65 -----------------------VEQGREM---RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-------- 110 (258)
T ss_dssp -----------------------HHHHHHT---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------
T ss_pred -----------------------HHhCccc---ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--------
Confidence 1110000 000000012223444555567899999999999988632
Q ss_pred cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHH
Q 001167 945 QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFA 1023 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfa 1023 (1134)
... ++ ... +.+..+...+.+++...|.+...+..++.+....+..+.+...|++++...| +...|...
T Consensus 111 ~~~-~~-------~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 179 (258)
T 3uq3_A 111 TAD-IL-------TKL---RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179 (258)
T ss_dssp CHH-HH-------HHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhH-HH-------HHH---hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 111 11 111 2245677888999999999998888788887788999999999999998877 45666444
Q ss_pred HHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhC------CCcHHHHH
Q 001167 1024 LAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHAC------PWSKRLWL 1093 (1134)
Q Consensus 1024 I~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~C------PwsK~L~m 1093 (1134)
...-... |....|...|++++. ..+.++..|.......... |+++.|...|.+|+..+ |.+..++.
T Consensus 180 ~~~~~~~-~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~ 251 (258)
T 3uq3_A 180 AAALAKL-MSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAV-KEYASALETLDAARTKDAEVNNGSSAREIDQ 251 (258)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHh-CCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhChhhcCCCchHHHHH
Confidence 4343444 789999999999998 4577888888888877775 99999999999999999 88777653
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.55 E-value=1.1e-05 Score=86.42 Aligned_cols=246 Identities=12% Similarity=-0.026 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCC
Q 001167 785 VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGST 864 (1134)
Q Consensus 785 l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~ 864 (1134)
...+..+|......|+++.|.++|+.++...|.. ...|...+.+....++ +..|+..+...-....
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--------~~~~~~l~~~~~~~~~------~~~A~~~~~~a~~~~~ 68 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS--------PYIYNRRAVCYYELAK------YDLAQKDIETYFSKVN 68 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC--------STTHHHHHHHHHHTTC------HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHHhh------HHHHHHHHHHHHhccC
Confidence 4457788999999999999999999999988732 1244444555555543 6677766543211100
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCc
Q 001167 865 YTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSH 944 (1134)
Q Consensus 865 ~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~ 944 (1134)
++ . .....+...+...+..+.++.|+..|++++...+.
T Consensus 69 -~~---~-------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------- 106 (272)
T 3u4t_A 69 -AT---K-------------------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------- 106 (272)
T ss_dssp -TT---T-------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------
T ss_pred -ch---h-------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-------
Confidence 00 0 00111223445556678999999999999986432
Q ss_pred cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHHHHH
Q 001167 945 QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVSLFA 1023 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~wlfa 1023 (1134)
...+|...+.+... .+....+...+.+++...|.+...|..+.......+..+.+...|++++...|. ...|...
T Consensus 107 -~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 182 (272)
T 3u4t_A 107 -RLDMYGQIGSYFYN---KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182 (272)
T ss_dssp -CTHHHHHHHHHHHH---TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred -cHHHHHHHHHHHHH---ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 22355555555433 356888999999999999999988876652433445899999999999998884 5555333
Q ss_pred HHHHHHcCCC---chHHHHHHHHHhcCCC-CCC--C---HHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1024 LAFEMSRKGP---PHRIRGLFERALANDT-VRC--S---VVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1024 I~~E~~r~g~---~~raRalFErAl~s~~-~~~--s---~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
....... +. ...|...|++|+.... .+. . ...|.....+.... |++++|...|.+|+...|.+...+
T Consensus 183 ~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 183 ARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN-RDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCccHHHHH
Confidence 3222222 33 6778999999997321 121 1 23444444455554 999999999999999999988654
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.51 E-value=2.6e-05 Score=82.56 Aligned_cols=214 Identities=10% Similarity=-0.083 Sum_probs=128.7
Q ss_pred cCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 001167 781 DRQD-VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 781 ~~~n-l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l 859 (1134)
+|.+ ...|...|.+....|+++.|..+|++++...|. ....|...+.+....++ ...|+..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~~~------~~~A~~~~--- 94 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--------SADAHAALAVVFQTEME------PKLADEEY--- 94 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC------HHHHHHHH---
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHHcCC------HHHHHHHH---
Confidence 5555 788999999999999999999999999987662 23455555555554432 34444433
Q ss_pred CCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCcc
Q 001167 860 GSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPER 939 (1134)
Q Consensus 860 ~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~ 939 (1134)
.+.+... .. ....+..++...+..++++.|+..|++++. .+
T Consensus 95 -------------------------~~a~~~~--------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~-- 135 (252)
T 2ho1_A 95 -------------------------RKALASD--------SR--NARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DT-- 135 (252)
T ss_dssp -------------------------HHHHHHC--------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CT--
T ss_pred -------------------------HHHHHHC--------cC--cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--Cc--
Confidence 2221110 00 112223444555556777888877777665 00
Q ss_pred ccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHH
Q 001167 940 RSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVV 1019 (1134)
Q Consensus 940 ~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~ 1019 (1134)
..+....++...+.++.. .+....+...+.+++...|.+...+..++.+.
T Consensus 136 --~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~------------------------- 185 (252)
T 2ho1_A 136 --LYPERSRVFENLGLVSLQ---MKKPAQAKEYFEKSLRLNRNQPSVALEMADLL------------------------- 185 (252)
T ss_dssp --TCTTHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-------------------------
T ss_pred --cCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH-------------------------
Confidence 122334444444444332 23455666666666666666654443222222
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1020 SLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1020 wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
... |....|...|++++. ..+.+...|.....+.... |+.+.|..+|.+++...|.+..++
T Consensus 186 --------~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 186 --------YKE-REYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp --------HHT-TCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred --------HHc-CCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCHHHH
Confidence 223 567777777777776 4456677777777766664 888888888888888888877654
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.49 E-value=5.1e-05 Score=78.06 Aligned_cols=195 Identities=12% Similarity=0.027 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHH
Q 001167 908 ICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLF 987 (1134)
Q Consensus 908 ~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll 987 (1134)
+...+...+..++++.|+..|++++...+ ....++...+.+... .+....+...+.+++...|.+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~ 79 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP--------KNELAWLVRAEIYQY---LKVNDKAQESFRQALSIKPDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChHHH
Confidence 33555666677899999999999988642 223345555544433 3567889999999999999999888
Q ss_pred HHHHHHHhhC-CChhHHHHHHHHHHh--hCCC-HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q 001167 988 NTLVEISNLY-TTPNKLRWIFDLYCH--KKPS-LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAY 1063 (1134)
Q Consensus 988 ~~~~~lE~~~-~~~~raR~il~~~~~--~~ps-~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~f 1063 (1134)
..++.+.... +..+.+..+|++++. ..|. ...|......-... |....|...|++++. ..+.++..|......
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLA--AQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCchHHHHHHHH
Confidence 8788887788 999999999999998 4443 34554333333334 789999999999998 456678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1064 EVYIASNPFAARRIFFRAIHACP-WSKRLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1064 E~~~~~n~~rAR~Vf~RAL~~CP-wsK~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
.... |+++.|..+|.+++..+| .+...|..+.......=..++...++..+.+
T Consensus 157 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 157 KMLA-GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8775 999999999999999999 8888776666543333345666666666654
No 34
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.47 E-value=2.4e-06 Score=84.66 Aligned_cols=80 Identities=6% Similarity=-0.057 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCC
Q 001167 902 DQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYP 981 (1134)
Q Consensus 902 ~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP 981 (1134)
.+++.+|.-||+|+.+ ++++.|+++|+.+++. + ..| ..+|.++|+++-+ ++++.++|.+|.+||..+|
T Consensus 58 rrYI~LWIrYA~~~ei-~D~d~aR~vy~~a~~~---h---KkF--AKiwi~~AqFEiR---qgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 58 ESFARIQVRFAELKAI-QEPDDARDYFQMARAN---C---KKF--AFVHISFAQFELS---QGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGCHHHHHHHHHH---C---TTB--HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH---h---HHH--HHHHHHHHHHHHH---cccHHHHHHHHHHHhccCC
Confidence 4567777788888766 7899999999988884 1 233 8999999998865 4688999999999999999
Q ss_pred CCHHHHHHHHHH
Q 001167 982 YSPKLFNTLVEI 993 (1134)
Q Consensus 982 ~N~~ll~~~~~l 993 (1134)
....++-..++.
T Consensus 126 k~~~~le~a~~n 137 (161)
T 4h7y_A 126 VPLEMLEIALRN 137 (161)
T ss_dssp BCHHHHHHHHHH
T ss_pred CcHHHHHHHHHh
Confidence 988777655543
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.45 E-value=5.8e-05 Score=77.66 Aligned_cols=215 Identities=15% Similarity=-0.002 Sum_probs=127.2
Q ss_pred hcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 001167 780 SDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 780 ~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l 859 (1134)
.+|.+...|...|......|+++.|.++|++++...|. ...+|...+.+....++ ...|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~------~~~A~~~~--- 65 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--------NELAWLVRAEIYQYLKV------NDKAQESF--- 65 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTC------HHHHHHHH---
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--------chHHHHHHHHHHHHcCC------hHHHHHHH---
Confidence 36777889999999999999999999999999987762 23355555555544432 34444433
Q ss_pred CCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhcCc
Q 001167 860 GSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELT-NGWTAGIEVLHQAFAMVLPE 938 (1134)
Q Consensus 860 ~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt-~~~~~A~~v~~~al~~~~~~ 938 (1134)
...+... .. ....+...+...+.. ++++.|+..|++++. . +
T Consensus 66 -------------------------~~a~~~~--------~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-~- 107 (225)
T 2vq2_A 66 -------------------------RQALSIK--------PD--SAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-P- 107 (225)
T ss_dssp -------------------------HHHHHHC--------TT--CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-T-
T ss_pred -------------------------HHHHHhC--------CC--ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-c-
Confidence 2222110 00 112223445555566 778888888887766 1 1
Q ss_pred cccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHH
Q 001167 939 RRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLV 1018 (1134)
Q Consensus 939 ~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~ 1018 (1134)
..+....++...+..... .+....+...+.+++...|.+...+..++.+...
T Consensus 108 ---~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---------------------- 159 (225)
T 2vq2_A 108 ---TYPTPYIANLNKGICSAK---QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML---------------------- 159 (225)
T ss_dssp ---TCSCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----------------------
T ss_pred ---CCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----------------------
Confidence 123344455444444432 2355666667777777777665544332222222
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCC-CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1019 VSLFALAFEMSRKGPPHRIRGLFERALANDTVR-CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1019 ~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~-~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
. |....|...|++++. ..+ .+...|...+.+.... |+.+.|...+..++...|.+...+
T Consensus 160 -----------~-~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 160 -----------A-GQLGDADYYFKKYQS--RVEVLQADDLLLGWKIAKAL-GNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp -----------H-TCHHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -----------c-CCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHH
Confidence 2 566677777777766 334 5566665555555553 777777777777777777776543
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.39 E-value=3.9e-05 Score=88.99 Aligned_cols=171 Identities=8% Similarity=-0.087 Sum_probs=88.6
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh-C
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNL-Y 997 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~-~ 997 (1134)
+.++.|+..|++++..- +.....|...+.++...+ ....+...+.++|...|+|...|.....+-.. .
T Consensus 180 g~~~eAl~~~~kal~ld--------P~~~~a~~~lg~~~~~~g---~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 180 RDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp TCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 44455555555555542 122233443433333222 23345555666666666666555444433333 2
Q ss_pred CChhHH-----HHHHHHHHhhCC-CHHHHHHHHHHHHHcC-CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc--
Q 001167 998 TTPNKL-----RWIFDLYCHKKP-SLVVSLFALAFEMSRK-GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA-- 1068 (1134)
Q Consensus 998 ~~~~ra-----R~il~~~~~~~p-s~~~wlfaI~~E~~r~-g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~-- 1068 (1134)
+..+.+ ...|++++..+| ....|.....+-...+ .....+...++.+ . ..+.+...+.....+.....
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcc
Confidence 332333 355666665555 3445533222211121 1456666666665 3 45666666555554444321
Q ss_pred -----CC-HHHHHHHHHHH-HHhCCCcHHHHHHHHHHhhhcc
Q 001167 1069 -----SN-PFAARRIFFRA-IHACPWSKRLWLDGFLKLNSIL 1103 (1134)
Q Consensus 1069 -----~n-~~rAR~Vf~RA-L~~CPwsK~L~m~a~~~l~~~~ 1103 (1134)
++ ++.|..+|.++ ++.-|-.+..|..-...|...|
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~ 367 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKH 367 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 12 47888889888 8888888888877666664443
No 37
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.38 E-value=2.1e-05 Score=85.74 Aligned_cols=278 Identities=6% Similarity=-0.131 Sum_probs=162.7
Q ss_pred CCCCCChHHHHHHHhhhcCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 764 GCSVTPCQPLAKGLLKSDRQD----VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~n----l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
..+...|..+++..|+..|.+ ..+|...|.+....|+++.|...|++|+......... .....++...+.+...
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--LGEAKASGNLGNTLKV 95 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc--HHHHHHHHHHHHHHHH
Confidence 445778999999999999988 4788899999999999999999999999875421100 0112344445555555
Q ss_pred cCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q 001167 840 SNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN 919 (1134)
Q Consensus 840 ~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~ 919 (1134)
.|+ +..|+..+. +.+..... . +. ...........+...+..+
T Consensus 96 ~g~------~~~A~~~~~----------------------------~al~~~~~-~--~~-~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 96 LGN------FDEAIVCCQ----------------------------RHLDISRE-L--ND-KVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp TTC------HHHHHHHHH----------------------------HHHHHHHH-T--TC-HHHHHHHHHHHHHHHHHHH
T ss_pred ccC------HHHHHHHHH----------------------------HHHHHHHH-h--cC-chHHHHHHHHHHHHHHHcC
Confidence 442 445554432 11111000 0 00 0000111122333333445
Q ss_pred C--------------------HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 001167 920 G--------------------WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI 979 (1134)
Q Consensus 920 ~--------------------~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~ 979 (1134)
. ++.|...|++++...... ...+..-.++...+.+... .+....+...+.+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL---LGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Confidence 5 788888888887753211 0111222334444444332 35677888889999887
Q ss_pred CCCCHH------HHHHHHHHHhhCCChhHHHHHHHHHHhhCC---C----HHHHHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 980 YPYSPK------LFNTLVEISNLYTTPNKLRWIFDLYCHKKP---S----LVVSLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 980 fP~N~~------ll~~~~~lE~~~~~~~raR~il~~~~~~~p---s----~~~wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
+|.+.. .+..++.+....+..+.+..+|++++...+ . ...+.......... |....|...|++|+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 765321 344445555567889999999998875432 1 22222222222334 789999999999986
Q ss_pred CCCCC----CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1047 NDTVR----CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1047 s~~~~----~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
..... .....|.......... |+++.|...|.+|+..++..
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHC----
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhh
Confidence 32111 1133555555566664 99999999999999988743
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.34 E-value=8.6e-05 Score=78.57 Aligned_cols=195 Identities=10% Similarity=-0.079 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHH
Q 001167 908 ICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLF 987 (1134)
Q Consensus 908 ~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll 987 (1134)
+...+...+..++++.|+..|++++...+ .....+...+.+... .+....+...+.+++...|.+...+
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP--------SSADAHAALAVVFQT---EMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCT--------TCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 33555566667889999999999988632 223455555555443 3568889999999999999999888
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHh--hCCC-HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhH
Q 001167 988 NTLVEISNLYTTPNKLRWIFDLYCH--KKPS-LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYE 1064 (1134)
Q Consensus 988 ~~~~~lE~~~~~~~raR~il~~~~~--~~ps-~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE 1064 (1134)
..++......+..+.+..+|++++. ..|. ...|......-... |....|...|++++. ..+.++.+|..+....
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLR--LNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCcccHHHHHHHHHHH
Confidence 8788877788999999999999988 5553 34444333333334 789999999999998 4567788898888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1065 VYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1065 ~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
... |+++.|..+|.+++..+|.....|..........=..++-..+++.+.+
T Consensus 186 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 186 YKE-REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHT-TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 875 9999999999999999998887666554433222234555555555543
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.34 E-value=6.3e-05 Score=79.24 Aligned_cols=116 Identities=12% Similarity=0.003 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 001167 965 SLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERA 1044 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErA 1044 (1134)
....+...+.+++...|++...|..+..+-...+..+.+...|++++....+...|......-... |....|...|++|
T Consensus 99 ~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 177 (217)
T 2pl2_A 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSM-GRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 356788899999999999999888777777788899999999999887665556664333332233 7889999999999
Q ss_pred hcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh
Q 001167 1045 LANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus 1045 l~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~ 1084 (1134)
+. ..|.++.+|..+....... |+++.|...|.++-++
T Consensus 178 l~--~~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~ 214 (217)
T 2pl2_A 178 LE--QAPKDLDLRVRYASALLLK-GKAEEAARAAALEHHH 214 (217)
T ss_dssp HH--HSTTCHHHHHHHHHHHTC------------------
T ss_pred HH--hCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHhhc
Confidence 98 5577888888877777764 8888898888876543
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.33 E-value=7.4e-05 Score=85.29 Aligned_cols=286 Identities=6% Similarity=-0.113 Sum_probs=173.2
Q ss_pred CCCCCChHHHHHHHhhhcCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDV----LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl----~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
..+...|..+++..|+..|.+. .+|...|.+....|+++.|...|++|+......... ......|...+.+...
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR--LGEAKSSGNLGNTLKV 138 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc--hHHHHHHHHHHHHHHH
Confidence 3456788999999999999886 578899999999999999999999999875422110 0122345555555555
Q ss_pred cCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q 001167 840 SNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN 919 (1134)
Q Consensus 840 ~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~ 919 (1134)
.|+ +..|+..+. +.+..... . +. .......+...+......+
T Consensus 139 ~g~------~~~A~~~~~----------------------------~al~~~~~-~--~~-~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 139 MGR------FDEAAICCE----------------------------RHLTLARQ-L--GD-RLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp TTC------HHHHHHHHH----------------------------HHHHHHHH-H--TC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCC------HHHHHHHHH----------------------------HHHHHHHH-h--hc-hHHHHHHHHHHHHHHHHcC
Confidence 442 445554432 21111000 0 00 0001112223344444456
Q ss_pred C-----------------HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC
Q 001167 920 G-----------------WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 920 ~-----------------~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~ 982 (1134)
+ ++.|+..|++++...... ...+..-..+...+.+... .+....+...+.+++..+|.
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYL---LGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHh
Confidence 6 788888888887754211 1111222344444444433 35678889999999998876
Q ss_pred CHH------HHHHHHHHHhhCCChhHHHHHHHHHHhhCC---C----HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC
Q 001167 983 SPK------LFNTLVEISNLYTTPNKLRWIFDLYCHKKP---S----LVVSLFALAFEMSRKGPPHRIRGLFERALANDT 1049 (1134)
Q Consensus 983 N~~------ll~~~~~lE~~~~~~~raR~il~~~~~~~p---s----~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~ 1049 (1134)
+.. .+..++.+....+..+.+...|++++...+ . ...+......-... |....|...|++|+....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 432 344455566678899999999998876533 1 22332222222333 789999999999997311
Q ss_pred C-CC---CHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1050 V-RC---SVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1050 ~-~~---s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
. .. ....+.......... |+++.|...|.+|+..++....-...+-
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 384 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAI-GGHERALKYAEQHLQLAXXXXXXXXXXX 384 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 1 11 123444445555554 9999999999999999986655444443
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.32 E-value=8.3e-05 Score=77.77 Aligned_cols=169 Identities=9% Similarity=-0.087 Sum_probs=133.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+...+..++++.|+..|++++...+ ....++...+.+... .+....+...+.+++..+|.+...+..
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 130 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDS--------SAATAYYGAGNVYVV---KEMYKEAKDMFEKALRAGMENGDLFYM 130 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--------cchHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445555667899999999999988632 223455555555443 356888999999999999999998887
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~ 1068 (1134)
++.+....+..+.+..++++++...| ....|.......... |....|...|++++. ..+.++.+|..+.......
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~- 206 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQFAAVTE--QDPGHADAFYNAGVTYAYK- 206 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHc-
Confidence 88887888999999999999998877 455664444443444 789999999999998 4567788898888888875
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1069 SNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
|+++.|...|.+++...|.+...|.
T Consensus 207 ~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 207 ENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCHHHHHHHHHHHHccCcchHHHHH
Confidence 9999999999999999999887664
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.31 E-value=7.8e-05 Score=84.24 Aligned_cols=278 Identities=6% Similarity=-0.133 Sum_probs=168.8
Q ss_pred CCCCCChHHHHHHHhhhcCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 764 GCSVTPCQPLAKGLLKSDRQD----VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~n----l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
..+...|...++..|+..|.+ ..+|...|.+....|+++.|...|+.|+......... .....+|...+.+...
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--LGEAKASGNLGNTLKV 99 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHH
Confidence 345678889999999998888 4688899999999999999999999999876532110 0112345555555555
Q ss_pred cCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhc
Q 001167 840 SNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTN 919 (1134)
Q Consensus 840 ~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~ 919 (1134)
.|+ +..|+..+. ..+...... +. ...........+...+..+
T Consensus 100 ~g~------~~~A~~~~~----------------------------~al~~~~~~---~~-~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 100 LGN------FDEAIVCCQ----------------------------RHLDISREL---ND-KVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp TTC------HHHHHHHHH----------------------------HHHHHHHHH---TC-HHHHHHHHHHHHHHHHHHH
T ss_pred cCC------HHHHHHHHH----------------------------HHHHHHHhc---cc-ccchHHHHHHHHHHHHHcC
Confidence 543 445554432 111110000 00 0000112223334444445
Q ss_pred C--------------------HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 001167 920 G--------------------WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI 979 (1134)
Q Consensus 920 ~--------------------~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~ 979 (1134)
. ++.|...|.+++...... ...+..-..+...+.+... .+....+...+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL---LGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH---HTBHHHHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHH
Confidence 5 888888888888764211 1112223344444444433 24677888899999988
Q ss_pred CCCCHH------HHHHHHHHHhhCCChhHHHHHHHHHHhhCC---C----HHHHHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 980 YPYSPK------LFNTLVEISNLYTTPNKLRWIFDLYCHKKP---S----LVVSLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 980 fP~N~~------ll~~~~~lE~~~~~~~raR~il~~~~~~~p---s----~~~wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
+|.+.. .+..++.+....+..+.+..+|++++...+ . ...+......-... |....|...|++|+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 776532 444455556678899999999998875432 1 22232222222233 789999999999997
Q ss_pred CCCCC----CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1047 NDTVR----CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1047 s~~~~----~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
..... .....|.....+.... |+++.|...|.+|+..++..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHh
Confidence 31111 1144555555566664 99999999999999987644
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.27 E-value=8.2e-05 Score=79.58 Aligned_cols=239 Identities=6% Similarity=-0.039 Sum_probs=158.4
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|.++++..++.+|.+...|...|.+....|+++.|.+.|++++. .+..+ ......|...+.+....++
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~----~~~~~~~~~lg~~~~~~~~- 89 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT----KAKSADFEYYGKILMKKGQ- 89 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT----TCCHHHHHHHHHHHHHTTC-
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch----hHHHHHHHHHHHHHHHccc-
Confidence 44577899999999999999999999999999999999999999999998 43211 1123446666666665543
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
...|+..+. ..+... . .....+...+...+..++++.
T Consensus 90 -----~~~A~~~~~----------------------------~a~~~~--------~--~~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 90 -----DSLAIQQYQ----------------------------AAVDRD--------T--TRLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp -----HHHHHHHHH----------------------------HHHHHS--------T--TCTHHHHHHHHHHHHTTCHHH
T ss_pred -----HHHHHHHHH----------------------------HHHhcC--------c--ccHHHHHHHHHHHHHccCHHH
Confidence 556655442 221110 0 001123344555667789999
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCC---h
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTT---P 1000 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~---~ 1000 (1134)
|+..|++++.. .+.....|...+..++... ....+...+.++++.+|.+...+..........+. .
T Consensus 127 A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (272)
T 3u4t_A 127 AIQYMEKQIRP--------TTTDPKVFYELGQAYYYNK---EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQ 195 (272)
T ss_dssp HHHHHGGGCCS--------SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhh
Confidence 99999988764 2333445555553444432 67889999999999999998777655555544444 6
Q ss_pred hHHHHHHHHHHhhC---CC------HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 1001 NKLRWIFDLYCHKK---PS------LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 1001 ~raR~il~~~~~~~---ps------~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
+.+...|++++... |. ...|.....+-... |+...|...|++|+. ..|.++..|..--.+..
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN-RDKVKADAAWKNILA--LDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--cCccHHHHHHHhhhhhc
Confidence 77888888877553 33 12332222222233 899999999999998 56778888876655443
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.25 E-value=0.00014 Score=73.37 Aligned_cols=165 Identities=6% Similarity=-0.146 Sum_probs=128.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+...+..++++.|+..|++++..-+ ..-..|...+.+... .+....+...+.+++...|.+...+..
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKADP--------NNVETLLKLGKTYMD---IGLPNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence 445556667899999999999998642 333455555555433 356778889999999999999998887
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~ 1068 (1134)
+.......+..+.+...+.+++...| ....|......-... |....|...|++++. ..|.++..|..........
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~- 154 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGK- 154 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHC-
Confidence 77777788899999999999998887 455554333332334 789999999999998 5677888888877777775
Q ss_pred CCHHHHHHHHHHHHHhCCCcH
Q 001167 1069 SNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
|+++.|...|.+||+.-|.+.
T Consensus 155 g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999988653
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.24 E-value=0.00023 Score=74.82 Aligned_cols=217 Identities=5% Similarity=-0.090 Sum_probs=132.0
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSG 843 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~ 843 (1134)
..+...|..+++..++.+ .+...|...|.+....|+++.|.+.|.+++...|...... .....+|...+.+....++
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~- 94 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY-KVISKSFARIGNAYHKLGD- 94 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTTC-
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-HHHHHHHHHHHHHHHHccc-
Confidence 345678999999999999 9999999999999999999999999999999877321100 0012455555555555442
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHH
Q 001167 844 SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTA 923 (1134)
Q Consensus 844 ~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~ 923 (1134)
...|+..+. ..+... + .. ......+.++.
T Consensus 95 -----~~~A~~~~~----------------------------~a~~~~---------~-~~--------~~~~~~~~~~~ 123 (258)
T 3uq3_A 95 -----LKKTIEYYQ----------------------------KSLTEH---------R-TA--------DILTKLRNAEK 123 (258)
T ss_dssp -----HHHHHHHHH----------------------------HHHHHC---------C-CH--------HHHHHHHHHHH
T ss_pred -----HHHHHHHHH----------------------------HHHhcC---------c-hh--------HHHHHHhHHHH
Confidence 445555442 221100 0 00 00111234556
Q ss_pred HHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHH
Q 001167 924 GIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKL 1003 (1134)
Q Consensus 924 A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~ra 1003 (1134)
|...+++++... +....++...+.+.... +....+...+.+++...|.+...|..++......+..+.+
T Consensus 124 a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 124 ELKKAEAEAYVN--------PEKAEEARLEGKEYFTK---SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HHHHHHHHHHCC--------HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcC--------cchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 666666665531 22333444444444322 3566677777777777777777666666666666777777
Q ss_pred HHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 1004 RWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 1004 R~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
...|.+++...| ....|......-... |....|...|++|+.
T Consensus 193 ~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 193 IADCNKAIEKDPNFVRAYIRKATAQIAV-KEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 777777777666 344453333333333 677777777777776
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.22 E-value=0.00011 Score=77.50 Aligned_cols=169 Identities=11% Similarity=-0.023 Sum_probs=132.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+...+..+.++.|+..|++++... |.....|...+.++.. .+....+...+.+++...|++...+..
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKEN--------PQDPEALYWLARTQLK---LGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS--------SSCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 44555666788999999999998753 3334455555555543 356788999999999999999988877
Q ss_pred HHHHHhhC-----------CChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHH
Q 001167 990 LVEISNLY-----------TTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLW 1057 (1134)
Q Consensus 990 ~~~lE~~~-----------~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LW 1057 (1134)
+..+-... +..+++...|++++...| ....|......-... |....|...|++|+... .++.+|
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~---~~~~~~ 154 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL-GERDKAEASLKQALALE---DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC---CCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc---cchHHH
Confidence 77766666 788999999999999888 456664333333334 78999999999999854 688899
Q ss_pred HHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001167 1058 RWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1058 r~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
.......... |+++.|...|.+|+..-|.+..+|..
T Consensus 155 ~~la~~~~~~-g~~~~A~~~~~~al~~~P~~~~~~~~ 190 (217)
T 2pl2_A 155 SALAELYLSM-GRLDEALAQYAKALEQAPKDLDLRVR 190 (217)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 8888877775 99999999999999999998876653
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.19 E-value=0.00013 Score=77.90 Aligned_cols=48 Identities=21% Similarity=0.045 Sum_probs=31.8
Q ss_pred ChHHHHHHHhhh----cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 769 PCQPLAKGLLKS----DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 769 ~aRk~aK~LLk~----~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.|.+.++.+++. +|.+...|...|.+....|+++.|.+.|++|+...|
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 74 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 74 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 344455555554 345567777777777777777777777777777665
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.13 E-value=0.00016 Score=75.66 Aligned_cols=170 Identities=7% Similarity=-0.076 Sum_probs=124.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001167 911 AALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTL 990 (1134)
Q Consensus 911 ~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~ 990 (1134)
.|...+..++++.|...|++++...+ .....+...+..... .+....+...+.+++...|.+...+..+
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENK--------EDAIPYINFANLLSS---VNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp -------------CCTTHHHHHTTCT--------TCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 34444556789999999999887432 223455555555433 3567889999999999999999888877
Q ss_pred HHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcC
Q 001167 991 VEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIAS 1069 (1134)
Q Consensus 991 ~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~ 1069 (1134)
+.+....+..+.+..+|++++...| ....|......-... |....|...|++++. ..+.++.+|..+....... |
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~ 173 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-EQPKLALPYLQRAVE--LNENDTEARFQFGMCLANE-G 173 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-T
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHc-C
Confidence 8877788999999999999998877 556665444444444 799999999999998 5567888998888888875 9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001167 1070 NPFAARRIFFRAIHACPWSKRLWLDG 1095 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPwsK~L~m~a 1095 (1134)
+++.|..+|.+++...|....+|..-
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 99999999999999999887766443
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.11 E-value=0.00015 Score=71.85 Aligned_cols=165 Identities=10% Similarity=-0.110 Sum_probs=125.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+...+..++++.|+..|++++... +.....+...+.+... .+....+...+.+++...|.+...+..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVK---TGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44555666788999999998776542 2223445555544433 356788999999999999999988877
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~ 1068 (1134)
++......+..+.+..+|++++...| ....|......-... |....|...|++++. ..+.++..|..........
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~- 157 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-GRFDEAIDSFKIALG--LRPNEGKVHRAIAFSYEQM- 157 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHc-
Confidence 77777777899999999999998877 455564433333334 789999999999998 4567788888888888775
Q ss_pred CCHHHHHHHHHHHHHhCCCcH
Q 001167 1069 SNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
|+++.|...|.+++...|.+.
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999888654
No 50
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.09 E-value=0.00067 Score=75.15 Aligned_cols=251 Identities=14% Similarity=0.012 Sum_probs=159.7
Q ss_pred CCChHHHHHHHhhhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCC
Q 001167 767 VTPCQPLAKGLLKSDRQD-VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSD 845 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~n-l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~ 845 (1134)
...|.+.++.+...+|.+ .....-+|+.....|+++.|...+... .+ .....+..++.+....+
T Consensus 15 y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~--------~~~~a~~~la~~~~~~~---- 79 (291)
T 3mkr_A 15 YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA--------PELQAVRMFAEYLASHS---- 79 (291)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC--------HHHHHHHHHHHHHHCST----
T ss_pred HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC--------hhHHHHHHHHHHHcCCC----
Confidence 455666666666666665 345555678888889988887655431 11 11223444555544432
Q ss_pred CchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhc-CCCchHHHHHHHHHHHHHHhcCHHHH
Q 001167 846 PDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRG-AVSDQSIALICSAALFEELTNGWTAG 924 (1134)
Q Consensus 846 ~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~-~~~~~~v~l~~~~Alfe~Lt~~~~~A 924 (1134)
..+.|+..|..+ + ..+ .+.+ ..+....+......+.++.|
T Consensus 80 --~~~~A~~~l~~l----------------------------l-------~~~~~P~~--~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 80 --RRDAIVAELDRE----------------------------M-------SRSVDVTN--TTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp --THHHHHHHHHHH----------------------------H-------HSCCCCSC--HHHHHHHHHHHHHTTCHHHH
T ss_pred --cHHHHHHHHHHH----------------------------H-------hcccCCCC--HHHHHHHHHHHHHCCCHHHH
Confidence 244566555332 0 000 0111 11122334444556789999
Q ss_pred HHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHhhCCChhH
Q 001167 925 IEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFN--TLVEISNLYTTPNK 1002 (1134)
Q Consensus 925 ~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~--~~~~lE~~~~~~~r 1002 (1134)
+..|++ + .....+...+.++.. .+.+..+...+.+++...|.+..... .++.+-...+..+.
T Consensus 121 l~~l~~------~-------~~~~~~~~l~~~~~~---~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 121 LRTLHQ------G-------DSLECMAMTVQILLK---LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HHHHTT------C-------CSHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHhC------C-------CCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHH
Confidence 998875 1 223455555655543 34678889999999999999864332 24444445577889
Q ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCH-HHHHHHHHH
Q 001167 1003 LRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNP-FAARRIFFR 1080 (1134)
Q Consensus 1003 aR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~-~rAR~Vf~R 1080 (1134)
+..+|++++..+| +..+|.-...+-+.. |....|...|++|+. ..|.++..|..++.+.... |+. +.+..+|.+
T Consensus 185 A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~-g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHL-GKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 9999999998877 555553222222334 789999999999998 5677899998888877775 666 467899999
Q ss_pred HHHhCCCcHHH
Q 001167 1081 AIHACPWSKRL 1091 (1134)
Q Consensus 1081 AL~~CPwsK~L 1091 (1134)
++...|.+..+
T Consensus 261 ~~~~~P~~~~~ 271 (291)
T 3mkr_A 261 LKDAHRSHPFI 271 (291)
T ss_dssp HHHHCTTCHHH
T ss_pred HHHhCCCChHH
Confidence 99999998864
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.99 E-value=0.0009 Score=77.83 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=41.0
Q ss_pred CCCChHHHHHHHhhh---------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001167 766 SVTPCQPLAKGLLKS---------DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEG 817 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~---------~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~ 817 (1134)
+.+.|.+..+..|+. ++..+..|.-+|.+....|+++.|...|++|+.+.+.
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 345555555554442 6778899999999999999999999999999988654
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.97 E-value=0.00028 Score=76.43 Aligned_cols=266 Identities=12% Similarity=-0.036 Sum_probs=151.6
Q ss_pred hcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 001167 780 SDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 780 ~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l 859 (1134)
.+|.+...|...|......|+++.|..+|++|+................++...+.+....++ ...|+..+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~--- 92 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK------YKDAANLL--- 92 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC------HHHHHHHH---
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC------HHHHHHHH---
Confidence 478888999999999999999999999999999864311000000122345555555555442 44555443
Q ss_pred CCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCcc
Q 001167 860 GSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPER 939 (1134)
Q Consensus 860 ~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~ 939 (1134)
...+..... .. +.........+...+...+..++++.|...|++++.......
T Consensus 93 -------------------------~~al~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 93 -------------------------NDALAIREK-TL-GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp -------------------------HHHHHHHHH-HH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHH-Hh-CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 222211100 00 000011122233445555667889999999999988641100
Q ss_pred ccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 001167 940 RSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI--------YPYSPKLFNTLVEISNLYTTPNKLRWIFDLYC 1011 (1134)
Q Consensus 940 ~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~--------fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~ 1011 (1134)
....+..-.++...+.++.. .+....+...+.+++.. .|.....+..++.+....+..+.+..+|++++
T Consensus 146 ~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQN---QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01112333445555554432 35677888899999887 45455556556666667789999999999887
Q ss_pred hhCC----------CHHHHHHHHHHHHH-----cCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 1012 HKKP----------SLVVSLFALAFEMS-----RKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 1012 ~~~p----------s~~~wlfaI~~E~~-----r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
...+ ....|......... ..+....+...|+.++. ..+..+.+|.......... |+++.|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~-g~~~~A~~ 299 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQ-GKFEAAET 299 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHC-CCHHHHHH
Confidence 5422 11223222222111 11344555566666665 3345567777777777775 99999999
Q ss_pred HHHHHHHhCCC
Q 001167 1077 IFFRAIHACPW 1087 (1134)
Q Consensus 1077 Vf~RAL~~CPw 1087 (1134)
+|.+|++..|.
T Consensus 300 ~~~~al~l~~~ 310 (311)
T 3nf1_A 300 LEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhc
Confidence 99999998763
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.95 E-value=0.0019 Score=75.00 Aligned_cols=287 Identities=10% Similarity=-0.032 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchh-ccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHH----
Q 001167 782 RQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLV-LKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVL---- 856 (1134)
Q Consensus 782 ~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~-~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL---- 856 (1134)
+....+|+..|.+....|+++.|.+.|++|+.+.+..... ........|...+++....|+ ...|+..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~------~~~A~~~~~ka~ 121 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR------LSDVQIYVDKVK 121 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHH
Confidence 3346788888999999999999999999999886422111 011233456666777666654 44554433
Q ss_pred ---HhcCCCCCCCCccCCCC---hhHHHH-HHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH---hcCHHHHHH
Q 001167 857 ---SCLGSGSTYTPFKCQPS---NVQVLR-AHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEEL---TNGWTAGIE 926 (1134)
Q Consensus 857 ---~~l~~~~~~~~~~~~~s---~~~ILk-Ar~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~L---t~~~~~A~~ 926 (1134)
..... .+.+.....- ...+++ .+..|++++......+.. .+++ ..+...++...+. .+..+.|++
T Consensus 122 ~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-~p~~--~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 122 HVCEKFSS--PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-KPKN--PEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHSCC--SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-STTC--HHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHhHhccc--ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-CCCC--HHHHHHHHHHHHHhcCchHHHHHHH
Confidence 22211 1111000000 000111 112455665444333222 1121 1122233333222 234567788
Q ss_pred HHHHHHHhhcCccccCCccHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHH
Q 001167 927 VLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQR-HHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRW 1005 (1134)
Q Consensus 927 v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~-~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~ 1005 (1134)
.|++++..- +....++...+..+.. .........+...+++++...|.+...+..++.+-...+..+.+..
T Consensus 197 ~~~~al~l~--------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 197 PLRQAIRLN--------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp HHHHHHHHC--------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcC--------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH
Confidence 888777642 2333333333322211 1112234567888899999999998888777777777888999999
Q ss_pred HHHHHHhhCC-CHHHHH-HHH-HHHHHc----------------CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH
Q 001167 1006 IFDLYCHKKP-SLVVSL-FAL-AFEMSR----------------KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY 1066 (1134)
Q Consensus 1006 il~~~~~~~p-s~~~wl-faI-~~E~~r----------------~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~ 1066 (1134)
.|.+++...| +...|. .+. +.+... ......+...|++|+.. .+.....|.........
T Consensus 269 ~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHH
Confidence 9999988887 344442 222 111100 01235666777777763 34444555555555555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1067 IASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1067 ~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
. |+++.|...|.+||...|....
T Consensus 347 ~-~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 347 A-DQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp T-TCHHHHHHHHHHHHHSCCCHHH
T ss_pred h-ccHHHHHHHHHHHHhcCCCChH
Confidence 4 8999999999999998886554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.87 E-value=0.0011 Score=76.77 Aligned_cols=171 Identities=7% Similarity=-0.034 Sum_probs=118.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHhCCCCHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLS-LSTVWETTLHGLQIYPYSPKLFN 988 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~-l~~~R~~l~~aL~~fP~N~~ll~ 988 (1134)
.++.+....+.++.|+..|++++... +.....|...+.++... +. +..+...+.++|...|+|...|.
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~--------P~~~~a~~~~g~~l~~~---g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELN--------AANYTVWHFRRVLLKSL---QKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 33444445567888888888888753 34455666666665443 33 77788888889999999888887
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHh
Q 001167 989 TLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYI 1067 (1134)
Q Consensus 989 ~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~ 1067 (1134)
....+-...+..+.+...|++++..+| ....|..-...-... |....+...|++||. ..+.+...|..........
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHh
Confidence 666666667788888888888888877 566664332222223 677888888999888 5566777777655555442
Q ss_pred cCCHHHH-----HHHHHHHHHhCCCcHHHHHH
Q 001167 1068 ASNPFAA-----RRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1068 ~~n~~rA-----R~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
.|..+.| ...|.+||...|.+...|..
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~ 279 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 279 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 2443555 47888899988988877755
No 55
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.87 E-value=0.0053 Score=67.83 Aligned_cols=168 Identities=9% Similarity=-0.033 Sum_probs=122.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLV 991 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~ 991 (1134)
+.+....++.+.|++.|++.+..- ..|....++...+.++... +.+..+...+.+ |.+...+...+
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~------~~P~~~~~~~~la~~~~~~---g~~~~Al~~l~~-----~~~~~~~~~l~ 137 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRS------VDVTNTTFLLMAASIYFYD---QNPDAALRTLHQ-----GDSLECMAMTV 137 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSC------CCCSCHHHHHHHHHHHHHT---TCHHHHHHHHTT-----CCSHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcc------cCCCCHHHHHHHHHHHHHC---CCHHHHHHHHhC-----CCCHHHHHHHH
Confidence 333334456899999999887641 1133345566666655443 456666666665 99998888888
Q ss_pred HHHhhCCChhHHHHHHHHHHhhCCC-HHHHHHHHHHHHHc-CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcC
Q 001167 992 EISNLYTTPNKLRWIFDLYCHKKPS-LVVSLFALAFEMSR-KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIAS 1069 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~~ps-~~~wlfaI~~E~~r-~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~ 1069 (1134)
.+-...+..+.+...|++++...|. ....+...+..+.. .|....|..+|++++. ..+.++.+|.......... |
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~-g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQ-G 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHc-C
Confidence 8888889999999999999988774 33333322223222 2678999999999998 5678899998877777775 9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1070 NPFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
+++.|...|.+||...|.+...|..-.
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999887765444
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.81 E-value=0.0018 Score=67.71 Aligned_cols=169 Identities=5% Similarity=-0.157 Sum_probs=118.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+...+..++++.|+..|++++...++. .. ..+...+..... .+....+...+.+++...|++...|..
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~-~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQ------DS-VTAYNCGVCADN---IKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTC------CH-HHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCC------Cc-HHHHHHHHHHHH---hhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 44555666788999999999999875311 12 233334443332 356788899999999999999988887
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCCC-H-------HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCC--CHHHHHH
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKPS-L-------VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRC--SVVLWRW 1059 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~ps-~-------~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~--s~~LWr~ 1059 (1134)
++.+-...+..+.+...|++++...|. . ..|.......... |....|...|++|+. ..+. ++..|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATD--VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHh--cCCCcccHHHHHH
Confidence 777777889999999999999988773 3 2232222222233 789999999999998 4455 5566654
Q ss_pred HHHhHHHhcCCH---------------------------HHHHHHHHHHHHhCCCcHHHH
Q 001167 1060 YIAYEVYIASNP---------------------------FAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1060 YI~fE~~~~~n~---------------------------~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
........ |+. ++|...|.+|+...|.+..+.
T Consensus 159 l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 217 (228)
T 4i17_A 159 LGVLFYNN-GADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIK 217 (228)
T ss_dssp HHHHHHHH-HHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 44433332 333 789999999999999887643
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.79 E-value=0.00094 Score=79.28 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=37.7
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhcc
Q 001167 770 CQPLAKGLLKSDRQDVLLCGVYARREAFFGNI-DHARRVFDMALSSIE 816 (1134)
Q Consensus 770 aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~-e~ARkVf~tALs~~~ 816 (1134)
+.+..+..++..+.+..+|...|......|++ +.|.+.|++|+...|
T Consensus 87 al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p 134 (474)
T 4abn_A 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP 134 (474)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC
Confidence 33455556666888899999999999889999 999999999888766
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.75 E-value=0.0027 Score=68.75 Aligned_cols=256 Identities=7% Similarity=-0.077 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCC
Q 001167 787 LCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYT 866 (1134)
Q Consensus 787 LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~ 866 (1134)
-|...|......|+++.|..+|+.|+...+..+. ....+|...+.+....++ +..|+..+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~g~------~~~A~~~~~--------- 67 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----TLSAIYSQLGNAYFYLHD------YAKALEYHH--------- 67 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHHHTTC------HHHHHHHHH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH----HHHHHHHHHHHHHHHcCC------HHHHHHHHH---------
Confidence 3455678888999999999999999998663110 012345555555555543 445555442
Q ss_pred CccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccH
Q 001167 867 PFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQL 946 (1134)
Q Consensus 867 ~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~ 946 (1134)
..+..... . +. .......+...+...+..++++.|...|++++...... ......
T Consensus 68 -------------------~al~~~~~-~--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ 122 (338)
T 3ro2_A 68 -------------------HDLTLART-I--GD-QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGE 122 (338)
T ss_dssp -------------------HHHHHHHH-H--TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred -------------------HHHHHhhc-c--cc-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHH
Confidence 11111000 0 00 00112223345566667789999999999998865321 011112
Q ss_pred HHHHHHHHHHHHHhhcc------------C-----CHHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHhhCCChhHH
Q 001167 947 EFLFNFNVRMLQRHHKQ------------L-----SLSTVWETTLHGLQIYPY---S---PKLFNTLVEISNLYTTPNKL 1003 (1134)
Q Consensus 947 E~L~~~~a~ll~~~~~~------------~-----~l~~~R~~l~~aL~~fP~---N---~~ll~~~~~lE~~~~~~~ra 1003 (1134)
-..+...+.+....+.. . .+..+...+.+++..++. . ...+..+..+....+..+.+
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 22333444443332210 0 045666677777665322 2 22333344445567889999
Q ss_pred HHHHHHHHhhCC---C----HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCC----HHHHHHHHHhHHHhcCCHH
Q 001167 1004 RWIFDLYCHKKP---S----LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCS----VVLWRWYIAYEVYIASNPF 1072 (1134)
Q Consensus 1004 R~il~~~~~~~p---s----~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s----~~LWr~YI~fE~~~~~n~~ 1072 (1134)
...+++++...+ . ...|......-... |....|...|++|+........ ...|.......... |+++
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~ 280 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHH
Confidence 999998875432 1 11332222222233 7899999999999963111111 34455555555554 9999
Q ss_pred HHHHHHHHHHHhCCCc
Q 001167 1073 AARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1073 rAR~Vf~RAL~~CPws 1088 (1134)
.|...|.+|+..+|..
T Consensus 281 ~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 281 KAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987643
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.74 E-value=0.0027 Score=75.36 Aligned_cols=170 Identities=10% Similarity=-0.100 Sum_probs=127.6
Q ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHH
Q 001167 909 CSAALFEELTNGW-TAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLF 987 (1134)
Q Consensus 909 ~~~Alfe~Lt~~~-~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll 987 (1134)
...+...+..+++ +.|+..|++++...+ .....|...+.++... +.+..+...+.++|...|+ ...+
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~-~~~~ 173 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEP--------ELVEAWNQLGEVYWKK---GDVTSAHTCFSGALTHCKN-KVSL 173 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTCCC-HHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC-HHHH
Confidence 3455555667889 999999999998642 2334555555555433 5688899999999999999 5666
Q ss_pred HHHHHHHhhC---------CChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHc-------CCCchHHHHHHHHHhcCCCC
Q 001167 988 NTLVEISNLY---------TTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSR-------KGPPHRIRGLFERALANDTV 1050 (1134)
Q Consensus 988 ~~~~~lE~~~---------~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r-------~g~~~raRalFErAl~s~~~ 1050 (1134)
..+..+.... +..+.+...|++++...| ....|......-... .|....|...|++|+. ..
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~ 251 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--VD 251 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--hC
Confidence 6666666677 788999999999999888 455563222221111 0457899999999998 34
Q ss_pred C---CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1051 R---CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1051 ~---~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
+ .++.+|..+....... |+++.|...|.+|+...|.....|.
T Consensus 252 p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 252 RKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp GGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5 7899999888888875 9999999999999999998876553
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.74 E-value=0.0052 Score=61.68 Aligned_cols=138 Identities=9% Similarity=-0.075 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 001167 949 LFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFE 1027 (1134)
Q Consensus 949 L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E 1027 (1134)
+|...+...+. .+.+..+...+.++|+..|+|...|..++.+-...+..+.+...+.++....| ....|.......
T Consensus 7 iy~~lG~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 7 IYMDIGDKKRT---KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45444444433 35788999999999999999999888788887888999999999999998877 455554433333
Q ss_pred HHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1028 MSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1028 ~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
... +....+...|++|+. ..+.+...|.......... |+++.|...|.+++...|.+...|.
T Consensus 84 ~~~-~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~ 145 (184)
T 3vtx_A 84 FMI-DEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPGFIRAYQ 145 (184)
T ss_dssp HHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcchhhhHHH
Confidence 334 788999999999998 5677888888888777775 9999999999999999999887664
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.73 E-value=0.0025 Score=62.81 Aligned_cols=129 Identities=7% Similarity=-0.175 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.+++..+|.+...+..++......+..+.+..++++++...| ....|......-... |....|...|+
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~ 100 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV-QKYDLAVPLLI 100 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 4677889999999999999998887777777788999999999999998877 455664433333334 78999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1043 RALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
+++. ..+.++.+|..+....... |+++.|..+|.+++..+|.....|..-.
T Consensus 101 ~~~~--~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 101 KVAE--ANPINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHh--cCcHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 9998 4567888998888887775 9999999999999999998876665443
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.73 E-value=0.0014 Score=74.70 Aligned_cols=258 Identities=8% Similarity=-0.099 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCC
Q 001167 785 VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGST 864 (1134)
Q Consensus 785 l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~ 864 (1134)
...+...|......|+++.|...|+.|+...+..+. ....+|...+.+....|+ +..|+..+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~lg~~~~~~g~------~~~A~~~~-------- 109 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR----TLSAIYSQLGNAYFYLGD------YNKAMQYH-------- 109 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHHHHTC------HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh----HHHHHHHHHHHHHHHCCC------HHHHHHHH--------
Confidence 334445677788899999999999999998763110 011345555555554442 44555443
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCc
Q 001167 865 YTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSH 944 (1134)
Q Consensus 865 ~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~ 944 (1134)
.+.+..... . +. .......+...+...+..++++.|...|++++...... ...+
T Consensus 110 --------------------~~al~~~~~-~--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~ 163 (411)
T 4a1s_A 110 --------------------KHDLTLAKS-M--ND-RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRL 163 (411)
T ss_dssp --------------------HHHHHHHHH-T--TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHH
T ss_pred --------------------HHHHHHHHH-c--cC-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchH
Confidence 222211000 0 00 00112233355666677789999999999998864211 0112
Q ss_pred cHHHHHHHHHHHHHHhhc----------cC----CHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHhhCCChhHHH
Q 001167 945 QLEFLFNFNVRMLQRHHK----------QL----SLSTVWETTLHGLQIYPY------SPKLFNTLVEISNLYTTPNKLR 1004 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~----------~~----~l~~~R~~l~~aL~~fP~------N~~ll~~~~~lE~~~~~~~raR 1004 (1134)
..-..+...+.+....+. .. .+..+...+.+++..++. ....+..++.+....+..+.+.
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 223344444444433321 00 045666777777765532 1223444455556788999999
Q ss_pred HHHHHHHhhCC---CH----HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC-C---CCHHHHHHHHHhHHHhcCCHHH
Q 001167 1005 WIFDLYCHKKP---SL----VVSLFALAFEMSRKGPPHRIRGLFERALANDTV-R---CSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 1005 ~il~~~~~~~p---s~----~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~-~---~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
..|++++...+ .. ..+......-... |....|...|++|+..... . ....+|.......... |+++.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~ 321 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFL-GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNT 321 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHH
Confidence 99998876543 11 1222222222233 7899999999999973211 1 1144555555666664 99999
Q ss_pred HHHHHHHHHHhCCCc
Q 001167 1074 ARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1074 AR~Vf~RAL~~CPws 1088 (1134)
|...|.+|+..++..
T Consensus 322 A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 322 AIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999987754
No 63
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.72 E-value=0.0014 Score=60.67 Aligned_cols=121 Identities=13% Similarity=-0.009 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+.+..+...+.+++...|.+...+..++......+..+.+..+|++++...| ....|......-... |....|...|+
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 93 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQ 93 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 4677889999999999999988887777766677889999999999988776 455554333333333 78999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1043 RALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
+++. ..+.+...|.......... |+++.|...|.+++...|.+
T Consensus 94 ~~~~--~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 94 KALE--LDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSTTC
T ss_pred HHHH--hCCCChHHHHHHHHHHHHH-ccHHHHHHHHHHHHccCCCC
Confidence 9998 4566788888888877775 99999999999999998853
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.68 E-value=0.0021 Score=68.35 Aligned_cols=168 Identities=11% Similarity=-0.065 Sum_probs=109.0
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT 998 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~ 998 (1134)
++++.|+..|++++..... ..+.....|...+..... .+....+...+.+++...|.+...|..++.+....+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 19 LQQEVILARMEQILASRAL----TDDERAQLLYERGVLYDS---LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHhcccc----cCchhHHHHHHHHHHHHH---cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 3477788888877764210 112334445445544433 246777888888888888888887777777777778
Q ss_pred ChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHH
Q 001167 999 TPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRI 1077 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~V 1077 (1134)
.++.+...|++++...| ....|......-... |....|...|++++. ..+.+......+. ..... |+++.|..+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~--~~~~~~~~~~~~~-~~~~~-~~~~~A~~~ 166 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-GRDKLAQDDLLAFYQ--DDPNDPFRSLWLY-LAEQK-LDEKQAKEV 166 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHH-HHHHH-HCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHH--hCCCChHHHHHHH-HHHHh-cCHHHHHHH
Confidence 88888888888888776 345554333333333 788888888888887 3444443333222 22333 788888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHH
Q 001167 1078 FFRAIHACPWSKRLWLDGFLK 1098 (1134)
Q Consensus 1078 f~RAL~~CPwsK~L~m~a~~~ 1098 (1134)
|.+++..+|.....|..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWNIVEFY 187 (275)
T ss_dssp HHHHHHHSCCCSTHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHH
Confidence 888888888776666544443
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.66 E-value=0.0013 Score=82.39 Aligned_cols=164 Identities=7% Similarity=-0.025 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHH
Q 001167 908 ICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLF 987 (1134)
Q Consensus 908 ~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll 987 (1134)
+...+......+.++.|+..|+++++.. +.....|...+.++... +.+..+...+.++|+..|++...|
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~---g~~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQ---GKLQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455666777789999999999999864 23345566666666443 468889999999999999999988
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH
Q 001167 988 NTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY 1066 (1134)
Q Consensus 988 ~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~ 1066 (1134)
..+.......+..+.|...|++++..+| ....|......-... |....|...|++||. ..+.++..|..+......
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHh
Confidence 8787877888999999999999999888 455663322222234 789999999999998 567788999888887777
Q ss_pred hcCCHHHHHHHHHHHHHhCC
Q 001167 1067 IASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1067 ~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
. |+++.|...|.+++...|
T Consensus 158 ~-g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 158 V-CDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp T-TCCTTHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHhCh
Confidence 5 999999999999998655
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.62 E-value=0.042 Score=58.83 Aligned_cols=245 Identities=9% Similarity=-0.096 Sum_probs=144.2
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcC
Q 001167 781 DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLG 860 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~ 860 (1134)
+|.+...|...|.+....|+++.|.+.|.+|+.... ...+...+.+.... .+. .+...+|+..+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~lg~~~~~g-~~~-~~~~~~A~~~~---- 65 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE----------NSGCFNLGVLYYQG-QGV-EKNLKKAASFY---- 65 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHT-SSS-CCCHHHHHHHH----
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHcC-CCc-CCCHHHHHHHH----
Confidence 466788888999999999999999999999998211 22333334333330 000 01234444433
Q ss_pred CCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhc
Q 001167 861 SGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEEL----TNGWTAGIEVLHQAFAMVL 936 (1134)
Q Consensus 861 ~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~L----t~~~~~A~~v~~~al~~~~ 936 (1134)
+..+.. + . .......+.+... .++++.|+..|++++..-
T Consensus 66 ------------------------~~a~~~-------~---~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 108 (273)
T 1ouv_A 66 ------------------------AKACDL-------N---Y--SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK- 108 (273)
T ss_dssp ------------------------HHHHHT-------T---C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ------------------------HHHHHC-------C---C--HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence 332211 0 0 1111233344444 678999999999998741
Q ss_pred CccccCCccHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh----CCChhHHHHHHHHHH
Q 001167 937 PERRSCSHQLEFLFNFNVRMLQR-HHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNL----YTTPNKLRWIFDLYC 1011 (1134)
Q Consensus 937 ~~~~~~~~~~E~L~~~~a~ll~~-~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~----~~~~~raR~il~~~~ 1011 (1134)
....+...+.+... .....+...+...+.+++... +...+..+..+-.. .+..+++...|++++
T Consensus 109 ---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 109 ---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp ---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 12233333433322 111356788899999999876 34334334444433 678999999999998
Q ss_pred hhCCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH---hcCCHHHHHHHHHHHHHhCC
Q 001167 1012 HKKPSLVVSLFALAFEMSR--KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY---IASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1012 ~~~ps~~~wlfaI~~E~~r--~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~---~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
...+.......+..+.... .++...|...|++|+.. . ++..+.....+... ..+++++|...|.+|+..-|
T Consensus 178 ~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 178 DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--C--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7754322222333222211 37899999999999984 2 24444433333333 02789999999999999988
Q ss_pred CcHHHHH
Q 001167 1087 WSKRLWL 1093 (1134)
Q Consensus 1087 wsK~L~m 1093 (1134)
.....++
T Consensus 254 ~~a~~~l 260 (273)
T 1ouv_A 254 KGACDIL 260 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.54 E-value=0.017 Score=64.69 Aligned_cols=259 Identities=7% Similarity=-0.062 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCC
Q 001167 784 DVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGS 863 (1134)
Q Consensus 784 nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~ 863 (1134)
....|..-|......|+++.|...|+.|+...|..+. ....+|...+......|+ +..|+..+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~g~------~~~A~~~~------- 70 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----TLSAIYSQLGNAYFYLHD------YAKALEYH------- 70 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHHHTTC------HHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHHHHHhcC------HHHHHHHH-------
Confidence 4455667788888999999999999999998763211 012345555555555542 44555443
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCC
Q 001167 864 TYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCS 943 (1134)
Q Consensus 864 ~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~ 943 (1134)
..++..... . +. .......+...+...+..++++.|...|++++...... ...
T Consensus 71 ---------------------~~al~~~~~-~--~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 123 (406)
T 3sf4_A 71 ---------------------HHDLTLART-I--GD-QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDK 123 (406)
T ss_dssp ---------------------HHHHHHHHH-T--TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred ---------------------HHHHHHHHh-c--cc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccc
Confidence 222111000 0 00 00112223345556667789999999999998865321 001
Q ss_pred ccHHHHHHHHHHHHHHhhccC-----------------CHHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHhhCCCh
Q 001167 944 HQLEFLFNFNVRMLQRHHKQL-----------------SLSTVWETTLHGLQIYPY---S---PKLFNTLVEISNLYTTP 1000 (1134)
Q Consensus 944 ~~~E~L~~~~a~ll~~~~~~~-----------------~l~~~R~~l~~aL~~fP~---N---~~ll~~~~~lE~~~~~~ 1000 (1134)
...-..+...+.+....+... .+..+...+.+++..++. . ...+..++.+....+..
T Consensus 124 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 203 (406)
T 3sf4_A 124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 203 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH
T ss_pred cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH
Confidence 112223444444433322100 045677777777765322 2 23344444555567889
Q ss_pred hHHHHHHHHHHhhCC---CH----HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC-CC---CHHHHHHHHHhHHHhcC
Q 001167 1001 NKLRWIFDLYCHKKP---SL----VVSLFALAFEMSRKGPPHRIRGLFERALANDTV-RC---SVVLWRWYIAYEVYIAS 1069 (1134)
Q Consensus 1001 ~raR~il~~~~~~~p---s~----~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~-~~---s~~LWr~YI~fE~~~~~ 1069 (1134)
+.+...|.+++...+ .. ..+......-... |....|...|++|+..... .. ....|.......... |
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g 281 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-Q 281 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-C
Confidence 999999998875432 21 1222222222233 7899999999999962111 11 134555555555554 9
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 001167 1070 NPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPws 1088 (1134)
+++.|...|.+|+..++..
T Consensus 282 ~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987643
No 68
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.45 E-value=0.0023 Score=77.32 Aligned_cols=157 Identities=10% Similarity=-0.057 Sum_probs=108.2
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhC
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLY 997 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~ 997 (1134)
+++++.|...|++++...+ .....|...+..+... +....+...+.++++..|++...|..++......
T Consensus 2 ~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--------QDFVAWLMLADAELGM---GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4567889999998877532 2334555555555433 4678899999999999999999888888888888
Q ss_pred CChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc---CCHHH
Q 001167 998 TTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA---SNPFA 1073 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~---~n~~r 1073 (1134)
+..+.+...|++++...| ....|.......... |....|...|++|+. ..+.+...|..+...... . |+.+.
T Consensus 71 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~-~~~~g~~~~ 146 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRR-LCDWRALDV 146 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH-TTCCTTHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH-hhccccHHH
Confidence 999999999999999888 455664433333344 789999999999998 456778888877776665 5 88999
Q ss_pred HHHHHHHHHHhCCCcH
Q 001167 1074 ARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1074 AR~Vf~RAL~~CPwsK 1089 (1134)
|...|.+|+...|.+.
T Consensus 147 A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 147 LSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHhcCCccc
Confidence 9999999999999753
No 69
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.45 E-value=0.0034 Score=62.84 Aligned_cols=121 Identities=7% Similarity=-0.012 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHH-HHHcCCCc--hHHHHHH
Q 001167 966 LSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAF-EMSRKGPP--HRIRGLF 1041 (1134)
Q Consensus 966 l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~-E~~r~g~~--~raRalF 1041 (1134)
+..+...+.+++...|.+...|..++......+..+.+...|++++...| +...|...... -... |.. ..|...|
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~-~~~~~~~A~~~~ 104 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA-SQHMTAQTRAMI 104 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-CCcchHHHHHHH
Confidence 34566788899999999999888888888888999999999999998876 55566443333 3333 666 9999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1042 ERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1042 ErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
++++. ..+.+...|..+....... |+++.|...|.+++...|.+..
T Consensus 105 ~~al~--~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 105 DKALA--LDSNEITALMLLASDAFMQ-ANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhCCCCcc
Confidence 99998 5677888888888877775 9999999999999999998754
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.43 E-value=0.015 Score=62.13 Aligned_cols=193 Identities=16% Similarity=-0.019 Sum_probs=116.4
Q ss_pred CCCCCChHHHHHHHhhhcCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhc
Q 001167 764 GCSVTPCQPLAKGLLKSDRQD---VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSS 840 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~n---l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~ 840 (1134)
..+...|....+.+++.+|.+ ...|...|.+....|+++.|...|++++...|..+ .....+...+......
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-----RVPQAEYERAMCYYKL 102 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----THHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-----hhHHHHHHHHHHHHHh
Confidence 345778999999999999999 88999999999999999999999999999887422 2233444444444431
Q ss_pred CCC--CCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh
Q 001167 841 NSG--SDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELT 918 (1134)
Q Consensus 841 ~~~--~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt 918 (1134)
+.. ...+....|+..+..+-... |. ......+...+...... ........+...+..
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~---p~-----~~~~~~a~~~~~~~~~~-------------~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRY---PN-----HELVDDATQKIRELRAK-------------LARKQYEAARLYERR 161 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHC---TT-----CTTHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHHHHHHC---cC-----chhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHc
Confidence 100 01124667777664331100 00 01111111111111100 011122445566677
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhcc-------CCHHHHHHHHHHHHHhCCCCHHHH
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQ-------LSLSTVWETTLHGLQIYPYSPKLF 987 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~-------~~l~~~R~~l~~aL~~fP~N~~ll 987 (1134)
++++.|+..|++++...+.. +.....+...+......+.. +.+..+...+.+++..||+++...
T Consensus 162 g~~~~A~~~~~~~l~~~p~~-----~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDT-----PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTS-----TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred cCHHHHHHHHHHHHHHCCCC-----chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 89999999999999875432 22344444444444332211 345678899999999999997544
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.34 E-value=0.0094 Score=74.71 Aligned_cols=146 Identities=8% Similarity=-0.093 Sum_probs=115.8
Q ss_pred CccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHH
Q 001167 943 SHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSL 1021 (1134)
Q Consensus 943 ~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wl 1021 (1134)
+|.+...+...+.++... +.+..+...+.++|+..|++...|..+..+-...+..+.|...|++++..+| ....|.
T Consensus 5 ~P~~a~al~nLG~~~~~~---G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQ---GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 455555666666655443 5688899999999999999999888788887888999999999999999888 455663
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001167 1022 FALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDG 1095 (1134)
Q Consensus 1022 faI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a 1095 (1134)
-....-... |....|...|++||. ..+.++..|.......... |+++.|...|.+||+..|.....|..-
T Consensus 82 nLg~~l~~~-g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~a~~~L 151 (723)
T 4gyw_A 82 NMGNTLKEM-QDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNL 151 (723)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence 322222233 789999999999998 5677888998888777775 999999999999999999987766543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.33 E-value=0.033 Score=63.03 Aligned_cols=246 Identities=9% Similarity=-0.057 Sum_probs=137.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccC
Q 001167 791 YARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKC 870 (1134)
Q Consensus 791 YA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~ 870 (1134)
.|......|+++.|...|.+|+......+.. .....+|...+.+....++ ...|+..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~~~------~~~A~~~~-------------- 166 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDR--IEKAEFFFKMSESYYYMKQ------TYFSMDYA-------------- 166 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTC------HHHHHHHH--------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHHHHHcCC------HHHHHHHH--------------
Confidence 6888889999999999999999886533211 0112344444555554432 44444433
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHH
Q 001167 871 QPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLF 950 (1134)
Q Consensus 871 ~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~ 950 (1134)
..++..... .+.............+......++++.|...|++++...... ......-..+
T Consensus 167 --------------~~al~~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 227 (383)
T 3ulq_A 167 --------------RQAYEIYKE---HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTL 227 (383)
T ss_dssp --------------HHHHHHHHT---CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred --------------HHHHHHHHh---CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHH
Confidence 222111100 000000111122234445555688999999999999875321 0111112233
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-----CHHH
Q 001167 951 NFNVRMLQRHHKQLSLSTVWETTLHGLQ-----IY-PYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-----SLVV 1019 (1134)
Q Consensus 951 ~~~a~ll~~~~~~~~l~~~R~~l~~aL~-----~f-P~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-----s~~~ 1019 (1134)
...+.+. ...+....+...+.+++. .. |.....+..++......+..+.|...+++++...+ ....
T Consensus 228 ~~lg~~y---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 228 YNIGLCK---NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHH---HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHH---HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3333332 233578889999999998 44 66655565566666778999999999999876532 1111
Q ss_pred HHHHHHHHH-HcCCC---chHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhC
Q 001167 1020 SLFALAFEM-SRKGP---PHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHAC 1085 (1134)
Q Consensus 1020 wlfaI~~E~-~r~g~---~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~C 1085 (1134)
. +.+...+ ...+. ..++..+|+++- ..+....++.......... |++++|...|.+|+...
T Consensus 305 ~-~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~-g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 305 E-FEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAKYYHER-KNFQKASAYFLKVEQVR 369 (383)
T ss_dssp H-HHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
Confidence 1 1111111 12245 556666666552 1122233444444444444 99999999999998854
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.32 E-value=0.0032 Score=62.19 Aligned_cols=134 Identities=10% Similarity=-0.027 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCC
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTT 999 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~ 999 (1134)
++++|++.|++++... +.....+...+++... .+....+.+.+.++|...|++...|..+..+....+.
T Consensus 12 ~~e~ai~~~~~a~~~~--------p~~~~~~~~la~~y~~---~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 12 DVERYIASVQGSTPSP--------RQKSIKGFYFAKLYYE---AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp HHHHHHHHHHHHSCSH--------HHHHTTHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhcccC--------cccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 4666777777664431 2223333444444332 2456777888888888888888777666666666667
Q ss_pred hhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH
Q 001167 1000 PNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY 1066 (1134)
Q Consensus 1000 ~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~ 1066 (1134)
.+.+...|.+++..+| ....|.....+-...+.....++..+++|+. ..|.++.+|.+..++...
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHH
Confidence 7777777777766666 3444432222222221223455555666666 345566666665554443
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.30 E-value=0.0052 Score=64.98 Aligned_cols=164 Identities=12% Similarity=0.055 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHH
Q 001167 877 VLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRM 956 (1134)
Q Consensus 877 ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~l 956 (1134)
+.+|...|++++........ .........+...+...+..+.++.|+..|++++...........+..-..+...+.+
T Consensus 17 ~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSG--HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34455666666543321111 1111223344466777777899999999999999864110001112333444444444
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhh--------CCC-HHH
Q 001167 957 LQRHHKQLSLSTVWETTLHGLQIY--------PYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHK--------KPS-LVV 1019 (1134)
Q Consensus 957 l~~~~~~~~l~~~R~~l~~aL~~f--------P~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~--------~ps-~~~ 1019 (1134)
.. ..+....+...+.+++..+ |.....+..++.+....+..+.+..+|++++.. .|. ...
T Consensus 95 ~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 95 YG---KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HH---HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 43 3356788899999999885 444444555555666788999999999998866 231 233
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 1020 SLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 1020 wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
+......-... |....|...|++++.
T Consensus 172 ~~~la~~~~~~-g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQ-GKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 32222232334 789999999999996
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.29 E-value=0.038 Score=58.17 Aligned_cols=178 Identities=10% Similarity=-0.077 Sum_probs=99.9
Q ss_pred cCCCCCChHHHHHHHhhh--------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHH
Q 001167 763 SGCSVTPCQPLAKGLLKS--------DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYA 834 (1134)
Q Consensus 763 ~~~~~k~aRk~aK~LLk~--------~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~ya 834 (1134)
...++..|..+++..|+. +|.....|...|.+....|+++.|...|+.|+.................|...+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345567777777766663 366788999999999999999999999999998752110000001223455555
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 001167 835 EVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALF 914 (1134)
Q Consensus 835 emEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alf 914 (1134)
.+....++ ++.|+..+ ..++...... . +.........+...+..
T Consensus 93 ~~~~~~g~------~~~A~~~~----------------------------~~al~~~~~~-~-~~~~~~~~~~~~~la~~ 136 (283)
T 3edt_B 93 VLYGKRGK------YKEAEPLC----------------------------KRALEIREKV-L-GKFHPDVAKQLNNLALL 136 (283)
T ss_dssp HHHHTTTC------HHHHHHHH----------------------------HHHHHHHHHH-H-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcc------HHHHHHHH----------------------------HHHHHHHHHH-c-CCCChHHHHHHHHHHHH
Confidence 55555432 44555443 2222111000 0 00001122333455566
Q ss_pred HHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 001167 915 EELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI 979 (1134)
Q Consensus 915 e~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~ 979 (1134)
.+..+.++.|...|++++...........+..-.++...+.+.... +....+...+.+++..
T Consensus 137 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 137 CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ---GKYQDAETLYKEILTR 198 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence 6667899999999999988632110011222334444444444332 4566777777777765
No 76
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.25 E-value=0.0022 Score=63.40 Aligned_cols=127 Identities=7% Similarity=-0.138 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001167 965 SLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFER 1043 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFEr 1043 (1134)
.+.++...+.+++...|.++..+..++.+-...+..+.|...|.+++..+| ....|.....+-... |....|...|++
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~~~A~~~~~~ 90 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE-ENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CchHHHHHHHHH
Confidence 456677778888888888887666667777788999999999999999988 567774433333334 799999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHHhcCCH-HHHHHHHHHHHHhCCCcHHHHHHH
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVYIASNP-FAARRIFFRAIHACPWSKRLWLDG 1095 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~~~~n~-~rAR~Vf~RAL~~CPwsK~L~m~a 1095 (1134)
|+. ..|.++..|..+..+.... |+. +.|+..+.+|+...|.+..+|..-
T Consensus 91 al~--~~p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 91 SVE--LNPTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHH--hCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 998 5677889998888877775 776 456666789999999999887543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.22 E-value=0.14 Score=57.41 Aligned_cols=172 Identities=9% Similarity=0.019 Sum_probs=112.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC-----H
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS-----P 984 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N-----~ 984 (1134)
..+......+.++.|...|++++...........+.....+...+.+++. .+.+..+...+.+++...|.. .
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA---WARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 45566677889999999999999865311100112333444444544433 357888999999999998863 2
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHhhC--C-CHHHHHHH---HH--HHHHcCCCchHHHHHHHHHhcCCCCC--CCH
Q 001167 985 KLFNTLVEISNLYTTPNKLRWIFDLYCHKK--P-SLVVSLFA---LA--FEMSRKGPPHRIRGLFERALANDTVR--CSV 1054 (1134)
Q Consensus 985 ~ll~~~~~lE~~~~~~~raR~il~~~~~~~--p-s~~~wlfa---I~--~E~~r~g~~~raRalFErAl~s~~~~--~s~ 1054 (1134)
..+..+..+....+..+.++..++++.... + ....|... .. .-... |+...++..+++++...... ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-GDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC-CCHHHHHHHHHhCCCCCCCcchhhH
Confidence 233344555666788999999999887542 1 11233221 11 12234 88999999999999743221 113
Q ss_pred HHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCC
Q 001167 1055 VLWRWYIAYEVYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1055 ~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
..+..+.+..... |+++.|..++.+++..++
T Consensus 254 ~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 254 GQWRNIARAQILL-GEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 3556666777765 999999999999998765
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.22 E-value=0.011 Score=63.21 Aligned_cols=171 Identities=13% Similarity=-0.008 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHH---
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKL--- 986 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~l--- 986 (1134)
..|...+..++++.|+..|++++...+.. +.....+...+...+. .+....+...+.+++..+|.++..
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~a~~~lg~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTH-----EWAADAQFYLARAYYQ---NKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCS-----TTHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----cchHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44555566788999999999887754321 2224445445544433 246778888899999999876432
Q ss_pred HHHHHHHHhh--------CCChhHHHHHHHHHHhhCCC-HHHH-----------------HHHHHHHHHcCCCchHHHHH
Q 001167 987 FNTLVEISNL--------YTTPNKLRWIFDLYCHKKPS-LVVS-----------------LFALAFEMSRKGPPHRIRGL 1040 (1134)
Q Consensus 987 l~~~~~lE~~--------~~~~~raR~il~~~~~~~ps-~~~w-----------------lfaI~~E~~r~g~~~raRal 1040 (1134)
+......-.. .+..+.+...|++++...|. ...+ +....+-... |....|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR-ELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHH
Confidence 2222222233 67788888999988887772 2111 1111111223 899999999
Q ss_pred HHHHhcCCCC-CCCHH--HHHHHHHhHH--------HhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1041 FERALANDTV-RCSVV--LWRWYIAYEV--------YIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1041 FErAl~s~~~-~~s~~--LWr~YI~fE~--------~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
|++++...+. +..+. ++...+.+.. . .|+++.|...|.+++...|.+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQ-PERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcc-cchHHHHHHHHHHHHHHCCCChH
Confidence 9999973221 22222 3332232322 2 27789999999999999998864
No 79
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.19 E-value=0.009 Score=65.65 Aligned_cols=128 Identities=6% Similarity=-0.067 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFER 1043 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFEr 1043 (1134)
+.+..+...+.++|...|+|...+..++.+....+..+.|...|+++....|....+......++...+....+...|++
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 210 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQ 210 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 56888999999999999999998888888888889999999999999888886655544444433333456677889999
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc--HHHHHH
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS--KRLWLD 1094 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws--K~L~m~ 1094 (1134)
|+. ..|.++.+|..+....... |+++.|...|.++++.-|.. ...+..
T Consensus 211 al~--~~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 211 QVA--ENPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred HHh--cCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHH
Confidence 998 5688999999999998885 99999999999999999976 444443
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.16 E-value=0.038 Score=57.90 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=60.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH-----
Q 001167 911 AALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK----- 985 (1134)
Q Consensus 911 ~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~----- 985 (1134)
.|...+..++++.|+..|++++...+. ++.....+...+...+. .+....+...+.+++..+|++..
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~lg~~~~~---~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPF-----GPYSQQVQLDLIYAYYK---NADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-----STTHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 344555668899999999999886432 12334445445544433 35688899999999999999863
Q ss_pred HHHHHHHHHh----------------hCCChhHHHHHHHHHHhhCC
Q 001167 986 LFNTLVEISN----------------LYTTPNKLRWIFDLYCHKKP 1015 (1134)
Q Consensus 986 ll~~~~~lE~----------------~~~~~~raR~il~~~~~~~p 1015 (1134)
++...+.... ..+..+++...|++++...|
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 2222111111 13456667777777776665
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.0054 Score=66.11 Aligned_cols=175 Identities=8% Similarity=-0.031 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhC-----CC
Q 001167 908 ICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIY-----PY 982 (1134)
Q Consensus 908 ~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~f-----P~ 982 (1134)
+...+...+..++++.|+.+|++++...........+..-..+...+.+... .+....+...+.+++..+ ++
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD---QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3355566677789999999999998864211000122333445555544433 356778888999999876 33
Q ss_pred C---HHHHHHHHHHHhhCCChhHHHHHHHHHHhhC--------C-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcC---
Q 001167 983 S---PKLFNTLVEISNLYTTPNKLRWIFDLYCHKK--------P-SLVVSLFALAFEMSRKGPPHRIRGLFERALAN--- 1047 (1134)
Q Consensus 983 N---~~ll~~~~~lE~~~~~~~raR~il~~~~~~~--------p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s--- 1047 (1134)
+ ...+..++.+....+..+.+..+|.+++... + ....|......-... |....|...|++|+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 3 4445455556667889999999999887652 2 122232222222233 7899999999999973
Q ss_pred ---CCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1048 ---DTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1048 ---~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
...+.....|.......... |+++.|..+|.+++..+|.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQ-GKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 11333455666667777765 9999999999999987654
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.13 E-value=0.023 Score=58.95 Aligned_cols=161 Identities=8% Similarity=0.085 Sum_probs=105.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHH----------------HHHHHHHhhccCCHHHHHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNF----------------NVRMLQRHHKQLSLSTVWETTLH 975 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~----------------~a~ll~~~~~~~~l~~~R~~l~~ 975 (1134)
+.-.+..++++.|+..|++++...+ .....|.. .+..+.. .+.+..+...+.+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~ 79 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNI--------DRTEMYYWTNVDKNSEISSKLATELALAYKK---NRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCH--------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--------CChHHHHHhhhcchhhhhHHHHHHHHHHHHH---CCCHHHHHHHHHH
Confidence 3334456789999999999988632 22223333 4444332 3568889999999
Q ss_pred HHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHH--HHHHHcCCCchHHHHHHHHHhcCCCCCC
Q 001167 976 GLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFAL--AFEMSRKGPPHRIRGLFERALANDTVRC 1052 (1134)
Q Consensus 976 aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI--~~E~~r~g~~~raRalFErAl~s~~~~~ 1052 (1134)
+|...|++...|..+..+....+..+.+...|++++..+| ....|.... .+.... .....+...|.+++..
T Consensus 80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~----- 153 (208)
T 3urz_A 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSP----- 153 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CC-----
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCC-----
Confidence 9999999999888888887788999999999999999988 455663322 221111 2234556667666642
Q ss_pred CHHHHHHHH-HhHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 001167 1053 SVVLWRWYI-AYEVYIASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1053 s~~LWr~YI-~fE~~~~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
.+.-|..|. .......|+++.|...|.+||...|.+.
T Consensus 154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 122222221 1111113789999999999999999753
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.10 E-value=0.18 Score=56.43 Aligned_cols=275 Identities=7% Similarity=-0.104 Sum_probs=156.3
Q ss_pred CCCCChHHHHHHHhhhcCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 765 CSVTPCQPLAKGLLKSDRQDV-----LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl-----~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
.+...|...++..|...|.+- ..+...+.+....|+++.|...|.+|+...+..... ......+...+.+...
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW--HYALWSLIQQSEILFA 105 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHH
Confidence 346677888888888765442 245566777888999999999999999877632110 0000112222333333
Q ss_pred cCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHh
Q 001167 840 SNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAV-SDQSIALICSAALFEELT 918 (1134)
Q Consensus 840 ~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~-~~~~v~l~~~~Alfe~Lt 918 (1134)
.|. +..|+ ..|.+.+..... .+.. ...........+...+..
T Consensus 106 ~G~------~~~A~----------------------------~~~~~al~~~~~---~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 106 QGF------LQTAW----------------------------ETQEKAFQLINE---QHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp TTC------HHHHH----------------------------HHHHHHHHHHHH---TTCTTSTHHHHHHHHHHHHHHHT
T ss_pred CCC------HHHHH----------------------------HHHHHHHHHHHH---hccccCcHHHHHHHHHHHHHHHh
Confidence 332 33333 333333322100 0110 001122223445566777
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC--CHHHHHHH-----H
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY--SPKLFNTL-----V 991 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~--N~~ll~~~-----~ 991 (1134)
++++.|...|++++....... ....-..+...+.+... .+.+..+...+.+++...+. +...|... +
T Consensus 149 g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQ---PQQQLQCLAMLIQCSLA---RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSC---GGGGHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhccC---cHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 999999999999998653211 01112334444444433 35678899999999877543 22223221 2
Q ss_pred HHHhhCCChhHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCC----CHHHHHHHHH
Q 001167 992 EISNLYTTPNKLRWIFDLYCHKKPS-----LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRC----SVVLWRWYIA 1062 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~~ps-----~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~----s~~LWr~YI~ 1062 (1134)
.+....+..+.++..+.++....+. ...+.......+.. |....+...+++++....... ...++.....
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 2234678899999999988765432 12232223333344 788999999999986311111 1123444444
Q ss_pred hHHHhcCCHHHHHHHHHHHHHhCC
Q 001167 1063 YEVYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1063 fE~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
..... |+.+.|+..|.+|+..++
T Consensus 302 ~~~~~-g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 302 LYWQA-GRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCHHHHHHHHHHHHHHhc
Confidence 44444 999999999999998765
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.08 E-value=0.0037 Score=77.79 Aligned_cols=172 Identities=12% Similarity=-0.061 Sum_probs=125.3
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001167 916 ELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISN 995 (1134)
Q Consensus 916 ~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~ 995 (1134)
...++++.|++.|++++...........+.....+...+..+... +....+...+.+++...|++...|..+.....
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL---GDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc---CCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 445679999999999982111000011233334555556555433 46788999999999999999988877777777
Q ss_pred hCCChhHHHHHHHHHHhhCC-CHHHHH-HHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHH
Q 001167 996 LYTTPNKLRWIFDLYCHKKP-SLVVSL-FALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 996 ~~~~~~raR~il~~~~~~~p-s~~~wl-faI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
..+..+.|...|++++..+| ....|. .+..++ .. |.... ...|++|+. ..+.++..|.......... |+++.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~-~~-g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~-g~~~~ 552 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAE-LA-GNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAE-GDRVG 552 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HH-TCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-Hc-CChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHc-CCHHH
Confidence 78899999999999999888 445553 232222 23 56677 899999998 5677888888887777775 99999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1074 ARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1074 AR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
|...|.+|+...|.....|+...
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHH
T ss_pred HHHHHHhhcccCcccHHHHHHHH
Confidence 99999999999998877665443
No 85
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.02 E-value=0.01 Score=59.69 Aligned_cols=154 Identities=6% Similarity=-0.081 Sum_probs=84.7
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001167 916 ELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISN 995 (1134)
Q Consensus 916 ~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~ 995 (1134)
...++++.|...|++++... |.....|...+.++.. .+....+...+.+++...| ++.++.....+..
T Consensus 17 ~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~---~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLE---TKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHH---TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHH---CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 34466777777777776643 2234455555554433 2456667777777777777 6654433322221
Q ss_pred -hCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHH
Q 001167 996 -LYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 996 -~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
.......+...|++++...| +...|......-... |....|...|++++...+....+..|.......... |+.+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL-GQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH-CSSCH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh-CCCCc
Confidence 11112234666677666666 344453333222233 667777777777776433333345566555555553 66666
Q ss_pred HHHHHHHHHH
Q 001167 1074 ARRIFFRAIH 1083 (1134)
Q Consensus 1074 AR~Vf~RAL~ 1083 (1134)
|...|.++|.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766664
No 86
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.01 E-value=0.0054 Score=60.45 Aligned_cols=115 Identities=10% Similarity=-0.134 Sum_probs=87.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC
Q 001167 972 TTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTV 1050 (1134)
Q Consensus 972 ~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~ 1050 (1134)
.+.+++...|.+...+..+...-...+..+.+...|.+++...| ....|......-... |....|...|++|+. ..
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAIHSYSYGAV--MD 85 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HS
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHh--cC
Confidence 45677888888887776666666678889999999999988887 566664332222233 789999999999998 45
Q ss_pred CCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1051 RCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1051 ~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
+.++..|.......... |+++.|...|.+|+..+|.+..
T Consensus 86 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQX-GELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCCc
Confidence 66777777766666664 9999999999999999997654
No 87
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.99 E-value=0.0024 Score=63.86 Aligned_cols=113 Identities=11% Similarity=-0.066 Sum_probs=82.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCC
Q 001167 973 TLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVR 1051 (1134)
Q Consensus 973 l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~ 1051 (1134)
+.+++...|.+...|..+...-...+..+.+..+|++++..+| ....|.....+-... |....|...|++|+. ..|
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~--l~P 101 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFA--LGK 101 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHh--hCC
Confidence 3455666777776665555555567778888888888887777 456664322222233 788999999999998 456
Q ss_pred CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 001167 1052 CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1052 ~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
.++..|...-...... |+++.|...|.+|+..+|.+.
T Consensus 102 ~~~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 6778888777777765 999999999999999999775
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.96 E-value=0.053 Score=49.71 Aligned_cols=123 Identities=11% Similarity=-0.011 Sum_probs=92.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLV 991 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~ 991 (1134)
+...+..++++.|..+|++++...+ .....+...+.+... .+....+...+.+++...|.+...+..++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 76 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDP--------RSAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCC--------cchhHHHHHHHHHHH---hcCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 4445556889999999999987532 223344444544433 24677899999999999999998887777
Q ss_pred HHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 992 EISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
.+....+..+.+..+|++++...| ....|...+..-... |....|...|++++.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-ccHHHHHHHHHHHHc
Confidence 777788899999999999998877 455664444444444 789999999999987
No 89
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.93 E-value=0.0019 Score=62.81 Aligned_cols=114 Identities=10% Similarity=-0.128 Sum_probs=79.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCC
Q 001167 973 TLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVR 1051 (1134)
Q Consensus 973 l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~ 1051 (1134)
+.+++...|.+...+..++......+..+.+...|.+++...| ....|.....+-... |....|...|++|+. ..+
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--~~p 83 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL-GLYEQALQSYSYGAL--MDI 83 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHh--cCC
Confidence 4455666676666555555555567778888888888887777 455554322222233 788999999999998 456
Q ss_pred CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1052 CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1052 ~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
.++..|.......... |+++.|...|.+|+..+|.+..
T Consensus 84 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCGG
T ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcc
Confidence 6777777776666664 9999999999999999886553
No 90
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.90 E-value=0.39 Score=51.11 Aligned_cols=215 Identities=7% Similarity=-0.079 Sum_probs=132.0
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcC
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAF----FGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSN 841 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~----~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~ 841 (1134)
+.+.|.+..+..++ +.+...|...|.+... .|+++.|.+.|++|+.... ...+...+.+....
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----------~~a~~~lg~~~~~g- 87 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY----------SNGCHLLGNLYYSG- 87 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHhCC-
Confidence 46677788888877 6778889999999999 9999999999999987531 23444444444331
Q ss_pred CCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH----
Q 001167 842 SGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEEL---- 917 (1134)
Q Consensus 842 ~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~L---- 917 (1134)
.+. .....+|+..+ +.++.. + . ...+...+.+...
T Consensus 88 ~~~-~~~~~~A~~~~----------------------------~~a~~~-------~---~--~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 88 QGV-SQNTNKALQYY----------------------------SKACDL-------K---Y--AEGCASLGGIYHDGKVV 126 (273)
T ss_dssp SSS-CCCHHHHHHHH----------------------------HHHHHT-------T---C--HHHHHHHHHHHHHCSSS
T ss_pred CCc-ccCHHHHHHHH----------------------------HHHHHc-------C---C--ccHHHHHHHHHHcCCCc
Confidence 000 01244454443 332211 0 0 1111233333344
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRH-HKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNL 996 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~-~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~ 996 (1134)
.++++.|+..|++++..- . ...+...+.+.... ....+...+...+.++++.- +...+..+..+-..
T Consensus 127 ~~~~~~A~~~~~~a~~~~---------~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---------D-GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHH 194 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---------C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC---------c-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHc
Confidence 578999999999998742 1 12233333333220 11356788899999999873 44444445555545
Q ss_pred ----CCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHhc
Q 001167 997 ----YTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSR--KGPPHRIRGLFERALA 1046 (1134)
Q Consensus 997 ----~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r--~g~~~raRalFErAl~ 1046 (1134)
.+..+++...|.+++...+.......+..++... .++...|...|++|+.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 7889999999999988766333333333332211 2688999999999998
No 91
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.90 E-value=0.025 Score=58.78 Aligned_cols=125 Identities=9% Similarity=-0.084 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH-HHHHHHHHHHHHcCCCchHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYP-YSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL-VVSLFALAFEMSRKGPPHRIRGLF 1041 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP-~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~-~~wlfaI~~E~~r~g~~~raRalF 1041 (1134)
+....+...+.+++...| .+...+...+......+..+.+...|++++...|.. ..|......-... |....|...|
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~ 99 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM-KNNQEYIATL 99 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc-ccHHHHHHHH
Confidence 568889999999999999 887766656666678899999999999999998854 4453332232333 7899999999
Q ss_pred HHHhcCCCCCCCHHH-------HHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC--cHHHH
Q 001167 1042 ERALANDTVRCSVVL-------WRWYIAYEVYIASNPFAARRIFFRAIHACPW--SKRLW 1092 (1134)
Q Consensus 1042 ErAl~s~~~~~s~~L-------Wr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw--sK~L~ 1092 (1134)
++|+. ..+.++.+ |...-...... |+++.|...|.+|+...|. ....|
T Consensus 100 ~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 100 TEGIK--AVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 99998 45667744 44444444444 8999999999999999997 54444
No 92
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.87 E-value=0.023 Score=55.19 Aligned_cols=115 Identities=7% Similarity=-0.212 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.+++...|.+...|..++......+.++.+...|.+++...| ....|......-... |....|...|+
T Consensus 27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~ 105 (166)
T 1a17_A 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDYE 105 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 5677888899999999999988887777776777888888888888887776 445554333333333 67888888888
Q ss_pred HHhcCCCCCCCHHHHHHHHHh--HHHhcCCHHHHHHHHHHHH
Q 001167 1043 RALANDTVRCSVVLWRWYIAY--EVYIASNPFAARRIFFRAI 1082 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~f--E~~~~~n~~rAR~Vf~RAL 1082 (1134)
+++. ..+.+...|..+... .... |++++|..++.++.
T Consensus 106 ~a~~--~~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 106 TVVK--VKPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKR 144 (166)
T ss_dssp HHHH--HSTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHH--hCCCCHHHHHHHHHHHHHHHH-HHHHHHHHcccchH
Confidence 8887 455666666544433 2222 45555555555443
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.85 E-value=0.29 Score=55.18 Aligned_cols=249 Identities=9% Similarity=-0.079 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCC
Q 001167 787 LCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYT 866 (1134)
Q Consensus 787 LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~ 866 (1134)
+|.--|......|+++.|...|..|+......+.. .....++...+.+....++ ...|+..+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~y~~~~~------~~~A~~~~---------- 164 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--IEKAEFHFKVAEAYYHMKQ------THVSMYHI---------- 164 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTC------HHHHHHHH----------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHcCC------cHHHHHHH----------
Confidence 34445778889999999999999999887633211 0112234444444444432 33444332
Q ss_pred CccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccH
Q 001167 867 PFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQL 946 (1134)
Q Consensus 867 ~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~ 946 (1134)
..++..... .+.............+......+.++.|...|++++...... ......
T Consensus 165 ------------------~~al~~~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 221 (378)
T 3q15_A 165 ------------------LQALDIYQN---HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFI 221 (378)
T ss_dssp ------------------HHHHHHHHT---STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred ------------------HHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHH
Confidence 222211100 000000111122234455556788999999999999864211 001111
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-----C
Q 001167 947 EFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQ-----IYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-----S 1016 (1134)
Q Consensus 947 E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~-----~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-----s 1016 (1134)
-..+...+.+. ...+....+...+.+++. ..|.....+..++......+..+.|...+++++...+ .
T Consensus 222 ~~~~~~lg~~y---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 222 AISLLNIANSY---DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHH---HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 12222223222 223567889999999998 6666655555566666788999999999999987643 2
Q ss_pred HHHHHHHHHHHHH-cCCC---chHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh
Q 001167 1017 LVVSLFALAFEMS-RKGP---PHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus 1017 ~~~wlfaI~~E~~-r~g~---~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~ 1084 (1134)
.... +.+...+. ..+. ...+...|+..- ..+....++.....+-... |++++|...|.+|+..
T Consensus 299 ~~~~-~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~-g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 299 YKEL-FLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESS-CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHH-HHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence 2222 12211221 1234 455555555421 1122233443333344443 9999999999999875
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.85 E-value=0.0092 Score=60.01 Aligned_cols=122 Identities=5% Similarity=-0.145 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFER 1043 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFEr 1043 (1134)
+.+..+...+.+++...|+|...|..+..+-...+..+.+...|++++...|....+.......+...+....+...|++
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 99 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQ 99 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 56788999999999999999998888888888889999999999998877764333322222222111223346889999
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
|+. ..|.++..|..+....... |+++.|...|.+++...|..
T Consensus 100 al~--~~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 100 ELA--ANPDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHH--HSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTT
T ss_pred HHH--hCCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCccc
Confidence 998 5677899999999988875 99999999999999999963
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.73 E-value=0.023 Score=68.41 Aligned_cols=127 Identities=9% Similarity=-0.115 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 001167 966 LSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERA 1044 (1134)
Q Consensus 966 l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErA 1044 (1134)
+..+...+.+++...|.+...|..++......+..+.+...|++++...| ....|......-... |....|...|++|
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~a 83 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ-QRHAEAAVLLQQA 83 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 45677888999999999998888777777778899999999999999887 455664333333334 7899999999999
Q ss_pred hcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1045 LANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1045 l~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
+. ..+.+...|..+....... |+++.|...|.+|+...|.+...|..-.
T Consensus 84 l~--~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 84 SD--AAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred Hh--cCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 98 5577888898888877775 9999999999999999998876654433
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.65 E-value=1.1 Score=50.00 Aligned_cols=50 Identities=4% Similarity=-0.201 Sum_probs=44.5
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcc
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFG--NIDHARRVFDMALSSIE 816 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~G--n~e~ARkVf~tALs~~~ 816 (1134)
...|-+....+|..||.+...|+-=+.+-...| .++.|-+.++.+|...|
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP 100 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE 100 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc
Confidence 345777888899999999999999888888888 99999999999999887
No 97
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.042 Score=52.07 Aligned_cols=109 Identities=8% Similarity=-0.163 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHH
Q 001167 981 PYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS----LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVL 1056 (1134)
Q Consensus 981 P~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps----~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~L 1056 (1134)
|.+...|...+......+.++.+..+|++++...|. ...|......-... +....|...|++++. ..+.++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIE--KDGGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HTSCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHh--hCccCHHH
Confidence 444444433333334455555566666655555553 23332222222233 677888888888887 34556777
Q ss_pred HHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1057 WRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1057 Wr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
|..+....... |+++.|...|.+++...|.+..+|.
T Consensus 102 ~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 102 LYRRSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 77666666664 8888888888888888888776653
No 98
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.60 E-value=0.027 Score=51.73 Aligned_cols=58 Identities=12% Similarity=-0.036 Sum_probs=37.9
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
|....+...|++++. ..+.++..|.......... |+++.|...|.+++...|.+...|
T Consensus 60 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~ 117 (131)
T 2vyi_A 60 GNYAGAVQDCERAIC--IDPAYSKAYGRMGLALSSL-NKHVEAVAYYKKALELDPDNETYK 117 (131)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hchHHHHHHHHHHHh--cCccCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCccchHHH
Confidence 566666667777666 3445566666666655554 777777777777777777666544
No 99
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.55 E-value=0.056 Score=49.07 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=64.2
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~ 1068 (1134)
++......+.++.+..+|.+++...| +...|......-... |....+..+|++++. ..+.++..|..........
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~- 90 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQ- 90 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHh-
Confidence 33333445566666666666665554 334443222222233 677888888888887 3456677777777766664
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1069 SNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
|+++.|..+|.+++...|.....+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~ 114 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAK 114 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHH
Confidence 888999999999999888776654
No 100
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.54 E-value=0.022 Score=53.75 Aligned_cols=104 Identities=12% Similarity=-0.092 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHH
Q 001167 980 YPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWR 1058 (1134)
Q Consensus 980 fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr 1058 (1134)
.|.+...|...+......+.++.+...|.+++...| +...|.....+-+.. |....|...|++|+. ..+.++..|.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~ 81 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALE--LDGQSVKAHF 81 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH--hCchhHHHHH
Confidence 445555554455555556666666666766666655 344443322222233 677777788888877 4456677777
Q ss_pred HHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1059 WYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1059 ~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
......... |+++.|...|.+|+..+|.
T Consensus 82 ~l~~~~~~~-~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 82 FLGQCQLEM-ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHChh
Confidence 777666664 7888888888888887775
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.54 E-value=0.16 Score=55.43 Aligned_cols=65 Identities=20% Similarity=0.026 Sum_probs=51.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 001167 781 DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 781 ~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l 859 (1134)
.|.+...+...|......|+++.|...|++|+...|. ....+...+.+.+..|. .+.|+..|..+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~la~~~~~~g~------~~~A~~~l~~~ 177 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--------NGEIGLLLAETLIALNR------SEDAEAVLXTI 177 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHHHTTC------HHHHHHHHTTS
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHHCCC------HHHHHHHHHhC
Confidence 4788888999999999999999999999999998883 23567777777777653 66788777544
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.51 E-value=0.025 Score=54.07 Aligned_cols=93 Identities=10% Similarity=-0.066 Sum_probs=62.6
Q ss_pred hCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 996 LYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 996 ~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
..+.++.|...|.+++..+| ....|.....+-... |....|...|++||. ..+.++..|.......... |+++.|
T Consensus 25 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~-~~~~~A 100 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-MEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVAM-REWSKA 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHC-CCHHHH
Confidence 34555556666666555555 334442211111223 678888888888887 4566777787777766665 899999
Q ss_pred HHHHHHHHHhCCCcHHHH
Q 001167 1075 RRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1075 R~Vf~RAL~~CPwsK~L~ 1092 (1134)
...|.+||...|.+...+
T Consensus 101 ~~~~~~al~l~P~~~~a~ 118 (126)
T 4gco_A 101 QRAYEDALQVDPSNEEAR 118 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHCcCCHHHH
Confidence 999999999999888754
No 103
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.50 E-value=0.045 Score=49.28 Aligned_cols=58 Identities=9% Similarity=-0.099 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
|....+...|++++. ..+.++.+|..+....... |+++.|...|.+++...|.+..+|
T Consensus 52 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 52 GDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFL-NRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHH
Confidence 566666667777766 3445566666666655554 777777777777777777666554
No 104
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.48 E-value=0.031 Score=51.87 Aligned_cols=58 Identities=9% Similarity=-0.136 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
+....|...|++|+. ..+.++..|..+....... |+++.|...|.+++..+|....+|
T Consensus 64 ~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~ 121 (133)
T 2lni_A 64 LEFQLALKDCEECIQ--LEPTFIKGYTRKAAALEAM-KDYTKAMDVYQKALDLDSSCKEAA 121 (133)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGTHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCCCchHHH
Confidence 455666666666665 3344555666655555553 677777777777777777655444
No 105
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.43 E-value=0.019 Score=51.40 Aligned_cols=105 Identities=9% Similarity=-0.063 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCC--CHHH
Q 001167 980 YPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRC--SVVL 1056 (1134)
Q Consensus 980 fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~--s~~L 1056 (1134)
.|.+...|..++......+..+++...|++++...| ....|......-... |....|...|++++. ..+. +..+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~ 78 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVIN--VIEDEYNKDV 78 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--TSCCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCcccchHHH
Confidence 355555554455555566777777777777777665 444453322222233 678888888998887 4455 7788
Q ss_pred HHHHHHhHHHhc-CCHHHHHHHHHHHHHhCCCc
Q 001167 1057 WRWYIAYEVYIA-SNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1057 Wr~YI~fE~~~~-~n~~rAR~Vf~RAL~~CPws 1088 (1134)
|......... . |+++.|...|.+++..+|.+
T Consensus 79 ~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 79 WAAKADALRY-IEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTT-CSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHhhcccCC
Confidence 8777777665 6 78888999999999888864
No 106
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.38 E-value=1.4 Score=49.40 Aligned_cols=171 Identities=8% Similarity=-0.088 Sum_probs=108.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH----
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK---- 985 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~---- 985 (1134)
..+.+.+..++++.|+..|++++...... ......-..+...+.+.+. .+....+...+.+|+..++....
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYY---MKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 34566777889999999999998864211 1111223344444444332 35677888999999998876532
Q ss_pred ---HHHHHHHHHhhCCChhHHHHHHHHHHhhCC---CH----HHHHHHHHHHHHcCCCchHHHHHHHHHhcCC---CC-C
Q 001167 986 ---LFNTLVEISNLYTTPNKLRWIFDLYCHKKP---SL----VVSLFALAFEMSRKGPPHRIRGLFERALAND---TV-R 1051 (1134)
Q Consensus 986 ---ll~~~~~lE~~~~~~~raR~il~~~~~~~p---s~----~~wlfaI~~E~~r~g~~~raRalFErAl~s~---~~-~ 1051 (1134)
.+..+..+-...+..+.|...|.+++...+ .. ..+.-...+-... |....|...|++|+... .. +
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ-SQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccch
Confidence 233334445577899999999998875422 11 1221111111223 78999999999999721 11 2
Q ss_pred CCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1052 CSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1052 ~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
..+..+.......... |+++.|...|.+|+..|+.
T Consensus 262 ~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKL-GKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp GHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 2344555555555554 9999999999999998763
No 107
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.037 Score=51.81 Aligned_cols=58 Identities=7% Similarity=-0.138 Sum_probs=40.9
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhC------CCcHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHAC------PWSKRLW 1092 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~C------PwsK~L~ 1092 (1134)
|....|...|++|+. ..+.++..|.......... |+++.|...|.+|+... |.++.++
T Consensus 52 ~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~p~~~~~~ 115 (126)
T 3upv_A 52 MSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAV-KEYASALETLDAARTKDAEVNNGSSAREID 115 (126)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHhCcccCCchhHHHHH
Confidence 566777777777776 3455666676666666654 78888888888888888 7666554
No 108
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.32 E-value=0.022 Score=56.21 Aligned_cols=58 Identities=12% Similarity=-0.047 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
|....|...|++|+. ..+.++..|..+....... |+++.|...|.+|+...|.+...|
T Consensus 59 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 59 GQHEKAAEDAELATV--VDPKYSKAWSRLGLARFDM-ADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCchHHH
Confidence 567777777777777 4455677777776666664 888888888888888888776543
No 109
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.30 E-value=2.3 Score=49.70 Aligned_cols=153 Identities=8% Similarity=-0.133 Sum_probs=93.1
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHh--hccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRH--HKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISN 995 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~--~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~ 995 (1134)
.++++.|+..|+++.+.- ....+...+.+.... +...+...+...+.++++.-+ ...+..+..+..
T Consensus 272 ~~d~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~ 339 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG----------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--ATAQANLGAIYF 339 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Confidence 467999999999887531 111222233332221 122467788889999988743 333333333332
Q ss_pred hCC---ChhHHHHHHHHHHhhCCCHHHH-HHHHHHHHHc--CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH---
Q 001167 996 LYT---TPNKLRWIFDLYCHKKPSLVVS-LFALAFEMSR--KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY--- 1066 (1134)
Q Consensus 996 ~~~---~~~raR~il~~~~~~~ps~~~w-lfaI~~E~~r--~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~--- 1066 (1134)
..+ ..+++...|.++.... ....| ..+..++... .++...|...|++|+.. . ++..|...-.+-..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKG-EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--G--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T--CHHHHHHHHHHHHHTSS
T ss_pred hCCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHHcCCC
Confidence 224 4678889999988763 34444 3333333222 26889999999999983 2 34444333333332
Q ss_pred hcCCHHHHHHHHHHHHHhCCC
Q 001167 1067 IASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1067 ~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
..++++.|...|.+|+...|.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
Confidence 027999999999999999854
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.19 E-value=0.16 Score=55.48 Aligned_cols=184 Identities=8% Similarity=-0.072 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHhCCCC-----
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQ-LSLSTVWETTLHGLQIYPYS----- 983 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~-~~l~~~R~~l~~aL~~fP~N----- 983 (1134)
..+......++++.|+..|++++...... .........+...+.+.. .. +.+..+...+.++|..+|.+
T Consensus 82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~---~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 82 EAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILE---NDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 33444455678999999999999875321 000111223333343332 22 56888999999999999865
Q ss_pred -HHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH--H------HHHHHHHHHHHcCCCchHHHHHHHHHhcCCCC-CCC
Q 001167 984 -PKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL--V------VSLFALAFEMSRKGPPHRIRGLFERALANDTV-RCS 1053 (1134)
Q Consensus 984 -~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~--~------~wlfaI~~E~~r~g~~~raRalFErAl~s~~~-~~s 1053 (1134)
...+..+..+-...+..+.|...|++++...|.. . .|+-...+-... |+...|+..|++|+...+. ..+
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCc
Confidence 2345455666677899999999999999876621 1 233222232334 7899999999999984322 111
Q ss_pred --HHHH-HHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1054 --VVLW-RWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1054 --~~LW-r~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
..++ .+...++....+++..|...|.+++..-||...+++..=..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 1122 222222221236788999999999999999887776554444
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.18 E-value=0.45 Score=49.53 Aligned_cols=150 Identities=9% Similarity=-0.048 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-H---HHH--HHHHHHHHH-----
Q 001167 964 LSLSTVWETTLHGLQIYPYSP---KLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-L---VVS--LFALAFEMS----- 1029 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~---~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~---~~w--lfaI~~E~~----- 1029 (1134)
+....+...+.+++..+|.++ ..+...+......+.+++|...|++++...|. . ..+ +-.+..++.
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~ 97 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQ 97 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 567889999999999999974 33434555556788999999999999988873 1 122 222333221
Q ss_pred ----------cCCCchHHHHHHHHHhcCCCCCCCHHHHHHH-----------------HHhHHHhcCCHHHHHHHHHHHH
Q 001167 1030 ----------RKGPPHRIRGLFERALANDTVRCSVVLWRWY-----------------IAYEVYIASNPFAARRIFFRAI 1082 (1134)
Q Consensus 1030 ----------r~g~~~raRalFErAl~s~~~~~s~~LWr~Y-----------------I~fE~~~~~n~~rAR~Vf~RAL 1082 (1134)
..|....|...|++++. ..|.++..|..+ ..+.... |++..|...|.++|
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l 174 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER-GAWVAVVNRVEGML 174 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence 12567899999999998 456666555432 2223343 89999999999999
Q ss_pred HhCCCcH----HHHHHHHHHhhhccChHHHHHHHHHhhh
Q 001167 1083 HACPWSK----RLWLDGFLKLNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1083 ~~CPwsK----~L~m~a~~~l~~~~~~~EL~~l~dvM~E 1117 (1134)
...|.+. .++..|..+..- =..++-.+.++++..
T Consensus 175 ~~~p~~~~~~~a~~~l~~~~~~~-g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 175 RDYPDTQATRDALPLMENAYRQM-QMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHSTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHCcCCCccHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh
Confidence 9999875 344444433221 124444555555443
No 112
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.15 Score=45.75 Aligned_cols=98 Identities=10% Similarity=-0.134 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.+++...|.+...|..++......+.++.+...+.+++...| ....|......-... |....|+..|+
T Consensus 18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~ 96 (118)
T 1elw_A 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL-NRFEEAKRTYE 96 (118)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 5678899999999999999999887777777778899999999999998887 455554333333334 78999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHhH
Q 001167 1043 RALANDTVRCSVVLWRWYIAYE 1064 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~fE 1064 (1134)
+++. ..+.++.+|..+....
T Consensus 97 ~~~~--~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 97 EGLK--HEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHH--cCCCCHHHHHHHHHhh
Confidence 9998 5677888887766543
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.17 E-value=0.048 Score=54.25 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=88.9
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HhhC
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEI-SNLY 997 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~l-E~~~ 997 (1134)
++++.|+..|++++...+ .....|...+.+... .+....+...+.+++...|.+...+..++.+ ....
T Consensus 24 ~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP--------QNSEQWALLGEYYLW---QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA 92 (177)
T ss_dssp ---CCCCHHHHHHHHHCC--------SCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 456778888888887642 223456556655543 2567889999999999999999888877777 5566
Q ss_pred CCh--hHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHH
Q 001167 998 TTP--NKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLW 1057 (1134)
Q Consensus 998 ~~~--~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LW 1057 (1134)
+.. +.+...|++++...| ....|.......... |....|...|++++.. .+.+...+
T Consensus 93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~ 152 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ-ANYAQAIELWQKVMDL--NSPRINRT 152 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT--CCTTSCHH
T ss_pred CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhh--CCCCccHH
Confidence 776 999999999999888 456664443333344 8999999999999984 34444333
No 114
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.15 E-value=0.13 Score=46.99 Aligned_cols=101 Identities=7% Similarity=-0.146 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.+++...|.+...+..++......+..+.+...+.+++...| ....|......-... |....|...|+
T Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~ 104 (131)
T 2vyi_A 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL-NKHVEAVAYYK 104 (131)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 5678899999999999999998887777777788999999999999998877 455554433333334 78999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHhHHHh
Q 001167 1043 RALANDTVRCSVVLWRWYIAYEVYI 1067 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~fE~~~ 1067 (1134)
+++. ..+.+...|..+.......
T Consensus 105 ~~~~--~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 105 KALE--LDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHH--HSTTCHHHHHHHHHHHHHH
T ss_pred HHHh--cCccchHHHHHHHHHHHHH
Confidence 9998 4567788888777766553
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.10 E-value=0.13 Score=47.56 Aligned_cols=117 Identities=8% Similarity=-0.064 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHH
Q 001167 944 HQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLF 1022 (1134)
Q Consensus 944 ~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlf 1022 (1134)
+....-|...+..... .+....+...+.+++...|.+...|..++......+..+.+..+|++++...| ....|..
T Consensus 13 ~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQ---KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHH---TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 3344445455544433 24677889999999999999998888777777788999999999999998877 4556643
Q ss_pred HHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHH
Q 001167 1023 ALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVY 1066 (1134)
Q Consensus 1023 aI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~ 1066 (1134)
....-... |....|...|++++. ..+.+..+|..+......
T Consensus 90 la~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 90 KAAALEAM-KDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHH
Confidence 33333334 789999999999998 445566677666555443
No 116
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.07 E-value=0.087 Score=65.38 Aligned_cols=141 Identities=7% Similarity=-0.120 Sum_probs=103.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..|...+..++++.|+..|++++...+ .....|...+.++... +....+...+.++|...|++...|..
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAERVG--------WRWRLVWYRAVAELLT---GDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCc--------chHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 444555566899999999999998643 3344566666555433 46788999999999999999888877
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
+.......+..+. ...|++++..+| ....|......-... |....|...|++|+. ..+.+...|........
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE-GDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc-CCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHH
Confidence 7777666777788 999999999888 556664333333334 789999999999998 55677777766555443
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.98 E-value=0.13 Score=49.62 Aligned_cols=99 Identities=10% Similarity=-0.109 Sum_probs=78.8
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~ 1068 (1134)
.+......+.++.+...|.+++...| ....|......-... |....|...|++|+. ..+.++..|..........
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~- 94 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIE--LDKKYIKGYYRRAASNMAL- 94 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHh-
Confidence 34444567889999999999998877 566664433333344 789999999999998 4567788888888877775
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1069 SNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
|+++.|..+|.+++..+|.....|
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~ 118 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAK 118 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999988766
No 118
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.96 E-value=0.4 Score=52.24 Aligned_cols=216 Identities=11% Similarity=-0.048 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCC
Q 001167 786 LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTY 865 (1134)
Q Consensus 786 ~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~ 865 (1134)
.+|..-+.+....|+++.|...|.+|+...+..... ......|...+.+....|+ ...|+..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~g~------~~~A~~~---------- 99 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE--DEAGNTYVEAYKCFKSGGN------SVNAVDS---------- 99 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTC------HHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHCCC------HHHHHHH----------
Confidence 345555667778899999999999999876422100 0011233333444333332 3344433
Q ss_pred CCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhcCccccCCc
Q 001167 866 TPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELT-NGWTAGIEVLHQAFAMVLPERRSCSH 944 (1134)
Q Consensus 866 ~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt-~~~~~A~~v~~~al~~~~~~~~~~~~ 944 (1134)
|..++..... .+... .....+...+...... ++++.|+..|++++...+... ...
T Consensus 100 ------------------~~~Al~l~~~---~g~~~-~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~ 155 (292)
T 1qqe_A 100 ------------------LENAIQIFTH---RGQFR-RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVA 155 (292)
T ss_dssp ------------------HHHHHHHHHH---TTCHH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHH
T ss_pred ------------------HHHHHHHHHH---cCCHH-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChH
Confidence 3322211100 00000 0011222334444443 899999999999998754220 001
Q ss_pred cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH
Q 001167 945 QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK-------LFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL 1017 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~-------ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~ 1017 (1134)
..-.++...+.++.. .+.+..+...+.+++...|.+.. .+.....+....+..+.+...|++++...|+.
T Consensus 156 ~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 156 LSNKCFIKCADLKAL---DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 112334444444433 35688899999999999998753 23334444556788999999999998877742
Q ss_pred HH------HH-HHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 1018 VV------SL-FALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 1018 ~~------wl-faI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
.. +. ....++....+....+...|++++.
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 11 10 1112221122456777777777765
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.82 E-value=0.18 Score=56.67 Aligned_cols=116 Identities=6% Similarity=-0.121 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYS---------------PKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFE 1027 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N---------------~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E 1027 (1134)
..+..+...+.++|...|.+ ...|..++......+.++.|...|++++...| ....|......-
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 240 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 46778999999999999999 35565566666677888888888888888777 445553322222
Q ss_pred HHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH-HHHHHHHHH
Q 001167 1028 MSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA-RRIFFRAIH 1083 (1134)
Q Consensus 1028 ~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA-R~Vf~RAL~ 1083 (1134)
... |....|+..|++|+. ..+.+...|.......... ++.+.| +.+|.+.+.
T Consensus 241 ~~~-g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 241 LAV-NDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRI-RRQLAREKKLYANMFE 293 (336)
T ss_dssp HHT-TCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 233 778888888888887 4566777777766666654 666666 555555554
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.74 E-value=0.25 Score=46.85 Aligned_cols=95 Identities=8% Similarity=-0.101 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.++|+..|.+..+|......-...+.++.+...|++++..+| ....|......-... |....|...|+
T Consensus 27 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~~~A~~~~~ 105 (126)
T 4gco_A 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM-REWSKAQRAYE 105 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 5688899999999999999999988777777788999999999999999888 566664433333334 78999999999
Q ss_pred HHhcCCCCCCCHHHHHHHH
Q 001167 1043 RALANDTVRCSVVLWRWYI 1061 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI 1061 (1134)
+|+. ..|.+...+..+-
T Consensus 106 ~al~--l~P~~~~a~~~l~ 122 (126)
T 4gco_A 106 DALQ--VDPSNEEAREGVR 122 (126)
T ss_dssp HHHH--HCTTCHHHHHHHH
T ss_pred HHHH--HCcCCHHHHHHHH
Confidence 9998 5567777765543
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.67 E-value=0.37 Score=43.44 Aligned_cols=96 Identities=8% Similarity=-0.070 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.+++..+|.+...+..++......+..+.+..+|++++...| ....|......-... |....|...|+
T Consensus 23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~ 101 (125)
T 1na0_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQ 101 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 5678899999999999999998887777777788999999999999998877 555554333333334 78999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 001167 1043 RALANDTVRCSVVLWRWYIA 1062 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~ 1062 (1134)
+++. ..+.++..+.....
T Consensus 102 ~~~~--~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 102 KALE--LDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHH--HCTTCHHHHHHHHH
T ss_pred HHHH--hCCCcHHHHHHHHH
Confidence 9998 44566666655443
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.27 Score=45.73 Aligned_cols=99 Identities=6% Similarity=-0.064 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.++|...|.+..+|..++......+.++.+...|++++...| ....|......-... |....|...|+
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~ 96 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-KEYASALETLD 96 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-hCHHHHHHHHH
Confidence 5678899999999999999999888777777788999999999999999888 456664333333334 78999999999
Q ss_pred HHhcCCC----CCCCHHHHHHHHHh
Q 001167 1043 RALANDT----VRCSVVLWRWYIAY 1063 (1134)
Q Consensus 1043 rAl~s~~----~~~s~~LWr~YI~f 1063 (1134)
+|+...+ .+.+..+|......
T Consensus 97 ~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 97 AARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCcccCCchhHHHHHHHHHHH
Confidence 9998321 15566666665543
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.54 E-value=0.34 Score=49.17 Aligned_cols=121 Identities=5% Similarity=-0.170 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.+++ +.+...|..++......+..+.+...|.+++...| ....|......-... |....|...|+
T Consensus 20 ~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~ 95 (213)
T 1hh8_A 20 KDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-EKYDLAIKDLK 95 (213)
T ss_dssp TCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-ccHHHHHHHHH
Confidence 45667777787775 33666676667777778999999999999998877 455554333332333 78999999999
Q ss_pred HHhcCCCC--------------CCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 001167 1043 RALANDTV--------------RCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1043 rAl~s~~~--------------~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
+|+..... +.....|.......... |+++.|...|.+|+...|...
T Consensus 96 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCcccc
Confidence 99983221 11236666666666664 999999999999999999653
No 124
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.49 E-value=0.083 Score=49.85 Aligned_cols=53 Identities=9% Similarity=-0.155 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
|....|...|++|+. ..|.++..|.......... |+++.|...|.+++...|.
T Consensus 65 g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 65 EKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE-HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC
Confidence 445555555555555 3344455554444444433 5555566666666555553
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.45 E-value=0.062 Score=60.43 Aligned_cols=117 Identities=8% Similarity=-0.136 Sum_probs=87.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----------------HHHHHHHHHHHHHcCCCchHH
Q 001167 974 LHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS----------------LVVSLFALAFEMSRKGPPHRI 1037 (1134)
Q Consensus 974 ~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps----------------~~~wlfaI~~E~~r~g~~~ra 1037 (1134)
..++...|.+...|..+.......+.++.|...|.+++...|. ...|.....+-+.. |....|
T Consensus 137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A 215 (336)
T 1p5q_A 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAA 215 (336)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 3444455555555655555556678899999999999988774 35564333333334 899999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001167 1038 RGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1038 RalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
...|++|+. ..+.++..|.......... |+++.|...|.+|+...|.+...|..
T Consensus 216 ~~~~~~al~--~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~ 269 (336)
T 1p5q_A 216 IESCNKALE--LDSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQ 269 (336)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHH--hCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999998 4567888887777777765 99999999999999999998876543
No 126
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=95.42 E-value=0.29 Score=48.92 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHhh-C-CChhHHHHHHHHHHhhCC----------CHHHHHHHHHHHHHcCC
Q 001167 967 STVWETTLHGLQIYPYS--PKLFNTLVEISNL-Y-TTPNKLRWIFDLYCHKKP----------SLVVSLFALAFEMSRKG 1032 (1134)
Q Consensus 967 ~~~R~~l~~aL~~fP~N--~~ll~~~~~lE~~-~-~~~~raR~il~~~~~~~p----------s~~~wlfaI~~E~~r~g 1032 (1134)
..+|..++..|..|-.+ -..|..|+.|-.. + ........+|++++.... -+.+|+..+.+
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------ 80 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------ 80 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------
Confidence 45788888888888544 3578889988422 1 122347788888875421 36788877643
Q ss_pred CchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1033 PPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1033 ~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
....+.+|.-......+..++.+|..|..+.-.. |++.+|..||.+||+.+---.+....++..|
T Consensus 81 -~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~-g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 145 (152)
T 4a1g_A 81 -NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQ-GELQHASAVLQRGIQNQAEPREFLQQQYRLF 145 (152)
T ss_dssp -BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 1237899999998888899999999999988875 9999999999999999877677666666655
No 127
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.32 E-value=0.52 Score=46.11 Aligned_cols=97 Identities=9% Similarity=-0.028 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHH
Q 001167 948 FLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAF 1026 (1134)
Q Consensus 948 ~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~ 1026 (1134)
..|...+..+.. .+....+...+.++|...|.+..+|..+.......+..+.+...|++++...| ....|......
T Consensus 12 ~~~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMA---RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344444444433 35688899999999999999999988788887888999999999999999888 45666433333
Q ss_pred HHHcCCCchHHHHHHHHHhcCC
Q 001167 1027 EMSRKGPPHRIRGLFERALAND 1048 (1134)
Q Consensus 1027 E~~r~g~~~raRalFErAl~s~ 1048 (1134)
-... |....|...|++|+...
T Consensus 89 ~~~~-g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDM-ADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHHhC
Confidence 3334 79999999999999843
No 128
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.31 E-value=0.23 Score=46.74 Aligned_cols=112 Identities=7% Similarity=-0.156 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHH
Q 001167 948 FLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS---PKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFA 1023 (1134)
Q Consensus 948 ~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N---~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfa 1023 (1134)
..+...+..... .+....+...+.+++...|++ ...|..++......+.++.+...+++++...| ....|...
T Consensus 29 ~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFK---CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHT---TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444332 356788999999999999998 66666666666778899999999999998877 55555433
Q ss_pred HHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 1024 LAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 1024 I~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
...-... |....|...|++++. ..+.+..+|..+.++..
T Consensus 106 a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKL-GRLDQAVLDLQRCVS--LEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHC
T ss_pred HHHHHHc-CCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHh
Confidence 3333334 789999999999998 56778889988777653
No 129
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.20 E-value=0.081 Score=59.59 Aligned_cols=123 Identities=6% Similarity=-0.128 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPK-----------------LFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALA 1025 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~-----------------ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~ 1025 (1134)
..+..+...+.++|...|.+.. +|..++......+.++.|...|.+++...| +...|.....
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556677778888888887762 444455555677888888888888888777 4555543333
Q ss_pred HHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 001167 1026 FEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSK 1089 (1134)
Q Consensus 1026 ~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK 1089 (1134)
.-... |....|+..|++|+. ..+.+..+|..+..+.....+..++++.+|.+++..-|.+.
T Consensus 273 a~~~~-g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 273 AKAEL-GQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHHTT-TCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHc-CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 33333 788888888888887 44556667766665533333566788888888888777653
No 130
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.19 E-value=0.19 Score=51.80 Aligned_cols=117 Identities=9% Similarity=0.013 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNT----------------LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAF 1026 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~----------------~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~ 1026 (1134)
+....+...+.+++...|.|...|.. +...-...+..+.+...|++++...| ....|......
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 56788999999999999999887765 55555677889999999999998887 55666433333
Q ss_pred HHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc-CCHHHHHHHHHHHHH
Q 001167 1027 EMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA-SNPFAARRIFFRAIH 1083 (1134)
Q Consensus 1027 E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~-~n~~rAR~Vf~RAL~ 1083 (1134)
-... |....|...|++|+. ..|.++..|.....+..... .....+...|.+++.
T Consensus 98 ~~~~-g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 98 QVCR-GQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHH-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHc-CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 3334 788999999999998 45667777766554433220 223445555555554
No 131
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.18 E-value=6.5 Score=45.77 Aligned_cols=45 Identities=11% Similarity=-0.127 Sum_probs=24.7
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAF----FGNIDHARRVFDMALS 813 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~----~Gn~e~ARkVf~tALs 813 (1134)
...|....+..++. .+..-+...|.+... .++++.|.+.|.+|..
T Consensus 59 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 33444444444443 344555555556555 5666666666666654
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.17 E-value=0.32 Score=48.19 Aligned_cols=100 Identities=6% Similarity=-0.070 Sum_probs=76.3
Q ss_pred CccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHH
Q 001167 943 SHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSL 1021 (1134)
Q Consensus 943 ~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wl 1021 (1134)
.|..-..+...+..++. .+.+..+...+.+++...|+|+..|..+...-...+..+.+...|++++..+| +...|.
T Consensus 32 ~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYN---KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34444444444544433 35688899999999999999999998888877888999999999999999888 455664
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHhc
Q 001167 1022 FALAFEMSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 1022 faI~~E~~r~g~~~raRalFErAl~ 1046 (1134)
....+-... |....|...|++|+.
T Consensus 109 ~lg~~~~~l-g~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 109 HTGQCQLRL-KAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 333332334 899999999999998
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.17 E-value=0.58 Score=51.35 Aligned_cols=164 Identities=7% Similarity=-0.059 Sum_probs=96.7
Q ss_pred HHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC--H----HHHH
Q 001167 915 EELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS--P----KLFN 988 (1134)
Q Consensus 915 e~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N--~----~ll~ 988 (1134)
....+.++.|...|.+++...... ......-..+...+.+.. ..+.+..+...+.++|..++.. + ..+.
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLK---DLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH---HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344578999999999998864211 001111223333333322 2345667888899999887653 2 2233
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHhhCC---C----HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC-CCCC---HHHH
Q 001167 989 TLVEISNLYTTPNKLRWIFDLYCHKKP---S----LVVSLFALAFEMSRKGPPHRIRGLFERALANDT-VRCS---VVLW 1057 (1134)
Q Consensus 989 ~~~~lE~~~~~~~raR~il~~~~~~~p---s----~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~-~~~s---~~LW 1057 (1134)
.+..+-.. +..+++...|++++...+ . ...+.-...+-... |....|...|++|+.... .... ...|
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 33344445 889999999998876533 1 12222111111223 789999999999997311 1111 1233
Q ss_pred HHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1058 RWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1058 r~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
.......... |+++.|...|.+++ ..|.
T Consensus 199 ~~~g~~~~~~-g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 199 IAQVLVQLHR-ADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHh-CCCC
Confidence 3333334443 89999999999999 8884
No 134
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.15 E-value=0.19 Score=45.96 Aligned_cols=87 Identities=11% Similarity=0.000 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCC-------HHHHHHHHHhHHHhc
Q 001167 997 YTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCS-------VVLWRWYIAYEVYIA 1068 (1134)
Q Consensus 997 ~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s-------~~LWr~YI~fE~~~~ 1068 (1134)
.+.++.+..+|.+++...| +...|......-... |....|...|++++.. .+.+ +.+|..........
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~- 92 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIGNSYFKE- 92 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHHHHHHHT-
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhh--ccccchhHHHHHHHHHHHHHHHHHh-
Confidence 3444444444444444433 222232111111122 5666777777777652 1222 45555555555554
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 001167 1069 SNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1069 ~n~~rAR~Vf~RAL~~CPw 1087 (1134)
|+++.|...|.+++...|.
T Consensus 93 ~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 93 EKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp TCHHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 8899999999999998884
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.07 E-value=0.13 Score=50.24 Aligned_cols=94 Identities=6% Similarity=-0.121 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 001167 949 LFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFE 1027 (1134)
Q Consensus 949 L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E 1027 (1134)
.+...+..+.. .+....+...+.+++...|.|...|..+.......+.++.+...|++++...| ....|.....+-
T Consensus 23 ~~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQ---SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444444433 35678899999999999999999998777777788999999999999998877 445554333332
Q ss_pred HHcCCCchHHHHHHHHHhc
Q 001167 1028 MSRKGPPHRIRGLFERALA 1046 (1134)
Q Consensus 1028 ~~r~g~~~raRalFErAl~ 1046 (1134)
... |....|...|++|+.
T Consensus 100 ~~~-g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQX-GELAEAESGLFLAQE 117 (148)
T ss_dssp HHT-TCHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHH
Confidence 334 889999999999997
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.03 E-value=1.3 Score=50.05 Aligned_cols=161 Identities=9% Similarity=0.077 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001167 922 TAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLS-------LSTVWETTLHGLQIYPYSPKLFNTLVEIS 994 (1134)
Q Consensus 922 ~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~-------l~~~R~~l~~aL~~fP~N~~ll~~~~~lE 994 (1134)
+.|+..++.++.. .|.+-.+|..+..++...+...+ +......+..+|..+|+|+..|..-..+-
T Consensus 47 ~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 47 ESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5788888888764 35567788888877765443211 34566778889999999999996444443
Q ss_pred hhCC--ChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCC-chHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhc--
Q 001167 995 NLYT--TPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGP-PHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIA-- 1068 (1134)
Q Consensus 995 ~~~~--~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~-~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~-- 1068 (1134)
...+ .+++.-.++++++..+| +...|..-.+.=... +. ...+...++++|. ..+.+...|..-........
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhc
Confidence 4445 47899999999999888 667774333221122 44 4788899999998 56778888854322222110
Q ss_pred -----------CCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1069 -----------SNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1069 -----------~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
+.++.+-..+.+||...|.+...|.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2367899999999999999999996
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.03 E-value=0.2 Score=54.68 Aligned_cols=186 Identities=5% Similarity=-0.108 Sum_probs=121.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
..+...+..+.++.|+..|++++...+ ....+|...+..... .+....+...+.+++...|++...+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNP--------LVAVYYTNRALCYLK---MQQPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445566677899999999999998642 234455555555433 356788999999999999999988877
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCCC------HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKPS------LVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAY 1063 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~ps------~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~f 1063 (1134)
++......+..+.|...|.+++...|. ..+|..... .+.+........ ..+....++..+-.+
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---------AKKKRWNSIEER--RIHQESELHSYLTRL 146 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---------HHHHHHHHHHHT--CCCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---------HHHHHHHHHHHH--HHhhhHHHHHHHHHH
Confidence 777777889999999999998876551 233322111 112222222322 345556677666655
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhcc--ChHHHHHHHHHhhhcCcc
Q 001167 1064 EVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSIL--TAKELSDLQEVMRDKELN 1121 (1134)
Q Consensus 1064 E~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~--~~~EL~~l~dvM~EKeLR 1121 (1134)
. . |+.++|...|.+|+..-|.+..+... +..+.... ..+++.+++.-+.+..-.
T Consensus 147 ~--~-~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 147 I--A-AERERELEECQRNHEGHEDDGHIRAQ-QACIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp H--H-HHHHHHHTTTSGGGTTTSCHHHHTHH-HHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred H--H-HHHHHHHHHHHhhhccccchhhhhhH-HHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 3 2 67899999999999999977654432 22211110 134677777766664333
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.02 E-value=0.26 Score=47.31 Aligned_cols=92 Identities=9% Similarity=-0.090 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+.+..+...+.+++...|.+..+|..+.......+..+.+...|++++...| ....|.....+-... |....|...|+
T Consensus 32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 110 (142)
T 2xcb_A 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL-GDLDGAESGFY 110 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 5688899999999999999999998777877888999999999999999887 444553333332334 88999999999
Q ss_pred HHhcCCCCCCCHHHHH
Q 001167 1043 RALANDTVRCSVVLWR 1058 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr 1058 (1134)
+|+. ..+.++..+.
T Consensus 111 ~al~--~~p~~~~~~~ 124 (142)
T 2xcb_A 111 SARA--LAAAQPAHEA 124 (142)
T ss_dssp HHHH--HHHTCGGGHH
T ss_pred HHHH--hCCCCcchHH
Confidence 9997 3344444443
No 139
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.93 E-value=6.1 Score=44.13 Aligned_cols=168 Identities=10% Similarity=-0.074 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH----
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK---- 985 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~---- 985 (1134)
..+.+.+..++++.|+..|++++...... ...+..-..+...+.+.+. .+....+...+.+|+..|+.+..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~---~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYH---MKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 44666777889999999999998864211 1111222333333333322 35677888999999998876321
Q ss_pred ---HHHHHHHHHhhCCChhHHHHHHHHHHhhC---CCH----HHHH-HHHHHHHHcCCCchHHHHHHHHHhc-----CCC
Q 001167 986 ---LFNTLVEISNLYTTPNKLRWIFDLYCHKK---PSL----VVSL-FALAFEMSRKGPPHRIRGLFERALA-----NDT 1049 (1134)
Q Consensus 986 ---ll~~~~~lE~~~~~~~raR~il~~~~~~~---ps~----~~wl-faI~~E~~r~g~~~raRalFErAl~-----s~~ 1049 (1134)
.+..++..-...+..+.|...|.+++... +.. ..+. .+.. -... |....|...|++|+. ..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~-y~~~-~~~~~A~~~~~~al~~~~~~~~- 257 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS-YDRS-GDDQMAVEHFQKAAKVSREKVP- 257 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH-TCHHHHHHHHHHHHHHHHHHCG-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHC-CCHHHHHHHHHHHHHHHHhhCC-
Confidence 22233344457889999999999887542 211 1121 1111 1123 789999999999997 32
Q ss_pred CCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1050 VRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1050 ~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
+..+..+.......... |+++.|...|.+|+..|+.
T Consensus 258 -~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 258 -DLLPKVLFGLSWTLCKA-GQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp -GGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCT
T ss_pred -hhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 22244444444444454 9999999999999999874
No 140
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.90 E-value=0.17 Score=46.52 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=59.4
Q ss_pred ChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCch
Q 001167 769 PCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDS 848 (1134)
Q Consensus 769 ~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~ 848 (1134)
.+...++..++.+|++...|..+|.+....|+++.|.+.|++|+...|. ....|...+.+....|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~------ 68 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--------YSVAWKWLGKTLQGQGD------ 68 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHHHcCC------
Confidence 5677888999999999999999999999999999999999999998873 23466666766666553
Q ss_pred HHHHHHHH
Q 001167 849 SLRAIHVL 856 (1134)
Q Consensus 849 ~~rAi~iL 856 (1134)
...|+..+
T Consensus 69 ~~~A~~~~ 76 (115)
T 2kat_A 69 RAGARQAW 76 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45565544
No 141
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.74 E-value=0.38 Score=44.40 Aligned_cols=91 Identities=7% Similarity=-0.098 Sum_probs=51.7
Q ss_pred CCChhHHHHHHHHHHhhCCC-H---HHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCC---HHHHHHHHHhHHHhcC
Q 001167 997 YTTPNKLRWIFDLYCHKKPS-L---VVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCS---VVLWRWYIAYEVYIAS 1069 (1134)
Q Consensus 997 ~~~~~raR~il~~~~~~~ps-~---~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s---~~LWr~YI~fE~~~~~ 1069 (1134)
.+.++.+...|.+++...|. . ..|......-... |....|...|++++. ..+.+ +..|.......... |
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~la~~~~~~-g 90 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVS--RYPTHDKAAGGLLKLGLSQYGE-G 90 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHT-T
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHc-C
Confidence 34455555555555544441 1 1222211122223 677777788888776 23334 44454444444444 8
Q ss_pred CHHHHHHHHHHHHHhCCCcHHH
Q 001167 1070 NPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
+++.|...|.+++...|.+...
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHH
Confidence 8888888888888888877654
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.67 E-value=0.43 Score=42.23 Aligned_cols=94 Identities=4% Similarity=-0.021 Sum_probs=67.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY--SPKLFNT 989 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~--N~~ll~~ 989 (1134)
+...+..++++.|+..|++++...+ .....|...+.+.... +....+...+.+++...|. +...|..
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLDP--------EESKYWLMKGKALYNL---ERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3444456778889999988887632 2234555555544332 4577788888889988898 8887777
Q ss_pred HHHHHhhC-CChhHHHHHHHHHHhhCCC
Q 001167 990 LVEISNLY-TTPNKLRWIFDLYCHKKPS 1016 (1134)
Q Consensus 990 ~~~lE~~~-~~~~raR~il~~~~~~~ps 1016 (1134)
++...... +..+.+...|.+++...|+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77777778 8888888888888877663
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=94.66 E-value=5.4 Score=44.89 Aligned_cols=184 Identities=12% Similarity=0.029 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HhhCCC
Q 001167 921 WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEI-SNLYTT 999 (1134)
Q Consensus 921 ~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~l-E~~~~~ 999 (1134)
++.++..++.++... |..-.+|..+.-++...+. .........+.++|...|+|..-|. |-.| -...+.
T Consensus 90 l~~EL~~~~~~L~~~--------PKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~l~~dprNy~AW~-~R~~vl~~l~~ 159 (331)
T 3dss_A 90 VKAELGFLESCLRVN--------PKSYGTWHHRCWLLSRLPE-PNWARELELCARFLEADERNFHCWD-YRRFVAAQAAV 159 (331)
T ss_dssp HHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHhccCc-ccHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhCc
Confidence 567778888777643 3456688888777765432 2466788899999999999999885 4333 344554
Q ss_pred -hhHHHHHHHHHHhhCC-CHHHHHH--HHHHHHHc-------C----CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhH
Q 001167 1000 -PNKLRWIFDLYCHKKP-SLVVSLF--ALAFEMSR-------K----GPPHRIRGLFERALANDTVRCSVVLWRWYIAYE 1064 (1134)
Q Consensus 1000 -~~raR~il~~~~~~~p-s~~~wlf--aI~~E~~r-------~----g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE 1064 (1134)
++..-..+++.+..+| ....|-+ .+...+.. + +...++...+.+||. ..|.+...|. |.++.
T Consensus 160 ~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~-Y~r~l 236 (331)
T 3dss_A 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWF-YHRWL 236 (331)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHH-HHHHH
Confidence 5788889999999988 5677732 22222210 0 124577788888887 5688899995 44444
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH---hhhccChHHHHHHHHHhhh
Q 001167 1065 VYIA-----------SNPFAARRIFFRAIHACPWSKRLWLDGFLK---LNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1065 ~~~~-----------~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~---l~~~~~~~EL~~l~dvM~E 1117 (1134)
+... +.++.+...+..+|..-|.+|=.++..+.. +...-..+|..+.++-+.+
T Consensus 237 l~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 237 LGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4332 236788889999999999887443333322 2122234566666666543
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.66 E-value=0.43 Score=44.58 Aligned_cols=101 Identities=6% Similarity=-0.117 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.+++...|.+..+|..++.+....+.++.+...|++++...| ....|......-... |....|...|+
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 101 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM-ESYDEAIANLQ 101 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 5678899999999999999999888888887788999999999999999887 456664433333334 78999999999
Q ss_pred HHhcCCCC---CCCHHHHHHHHHhHH
Q 001167 1043 RALANDTV---RCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 1043 rAl~s~~~---~~s~~LWr~YI~fE~ 1065 (1134)
+|+..... .....+|........
T Consensus 102 ~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 102 RAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 99973221 225667776655443
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.52 E-value=2.9 Score=46.44 Aligned_cols=202 Identities=7% Similarity=-0.008 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHH
Q 001167 904 SIALICSAALFEELT-NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHH----KQLSLSTVWETTLHGLQ 978 (1134)
Q Consensus 904 ~v~l~~~~Alfe~Lt-~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~----~~~~l~~~R~~l~~aL~ 978 (1134)
+++|-...-++..+. ..++.++..++.++... |..-.+|..+..++.+.. ....+......+.++|.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 344443333444444 48999999999998863 334557887777773321 11346677789999999
Q ss_pred hCCCCHHHHHHHHHHHhhCCChh--HHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCC------chHHHHHHHHHhcCCC
Q 001167 979 IYPYSPKLFNTLVEISNLYTTPN--KLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGP------PHRIRGLFERALANDT 1049 (1134)
Q Consensus 979 ~fP~N~~ll~~~~~lE~~~~~~~--raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~------~~raRalFErAl~s~~ 1049 (1134)
..|+|...|.--..+-...+.++ ..-.++++++..+| ....|-.-...=... +. ...+...++++|. .
T Consensus 139 ~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~~~~~~~~~eEl~~~~~aI~--~ 215 (306)
T 3dra_A 139 SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KHLATDNTIDEELNYVKDKIV--K 215 (306)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GGGCCHHHHHHHHHHHHHHHH--H
T ss_pred hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccchhhhHHHHHHHHHHHHH--h
Confidence 99999999963333335566677 88888999998888 556663222111111 21 5667777777777 5
Q ss_pred CCCCHHHHHHHHHhHHHhcCC-HHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhc
Q 001167 1050 VRCSVVLWRWYIAYEVYIASN-PFAARRIFFRAIHA----CPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDK 1118 (1134)
Q Consensus 1050 ~~~s~~LWr~YI~fE~~~~~n-~~rAR~Vf~RAL~~----CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EK 1118 (1134)
.+.+...|. |..+.+...|. .+.+...+.+++.. +..+..|...|-.+. ..=+.++--++++.+.+|
T Consensus 216 ~p~n~SaW~-y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~-~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 216 CPQNPSTWN-YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT-QQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp CSSCHHHHH-HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT
T ss_pred CCCCccHHH-HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhc
Confidence 677888885 44444443343 44455566655543 233344444433322 111334556666666654
No 146
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.41 E-value=0.37 Score=45.29 Aligned_cols=82 Identities=9% Similarity=-0.091 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.++|...|++...|..+..+....+..+.+...|++++...| ....|......-... |....|...|+
T Consensus 31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~-g~~~~A~~~~~ 109 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-HNANAALASLR 109 (121)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 5678899999999999999999998788887888999999999999999988 455553322222223 67899999999
Q ss_pred HHhc
Q 001167 1043 RALA 1046 (1134)
Q Consensus 1043 rAl~ 1046 (1134)
+++.
T Consensus 110 ~al~ 113 (121)
T 1hxi_A 110 AWLL 113 (121)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9997
No 147
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.30 E-value=0.095 Score=48.63 Aligned_cols=90 Identities=6% Similarity=-0.048 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHhhC---C-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHH
Q 001167 998 TTPNKLRWIFDLYCHKK---P-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFA 1073 (1134)
Q Consensus 998 ~~~~raR~il~~~~~~~---p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~r 1073 (1134)
+..+.+...|++++..+ | ....|......-... |....|...|++|+. ..|.++.+|..+....... |+++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~-g~~~~ 79 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNL-GRYEQ 79 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-TCHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHc-CCHHH
Confidence 44566777777777663 3 233443222222233 788999999999998 5677788888888877775 99999
Q ss_pred HHHHHHHHHHhCCCcHHH
Q 001167 1074 ARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1074 AR~Vf~RAL~~CPwsK~L 1091 (1134)
|...|.+|+...|.+..+
T Consensus 80 A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 999999999999988765
No 148
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.23 E-value=0.73 Score=48.76 Aligned_cols=125 Identities=6% Similarity=0.007 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHH-hhC--CC--hhHHHHHHHHHHhhCC----------CHHHHHHHHHHHH
Q 001167 967 STVWETTLHGLQIY---PYSPKLFNTLVEIS-NLY--TT--PNKLRWIFDLYCHKKP----------SLVVSLFALAFEM 1028 (1134)
Q Consensus 967 ~~~R~~l~~aL~~f---P~N~~ll~~~~~lE-~~~--~~--~~raR~il~~~~~~~p----------s~~~wlfaI~~E~ 1028 (1134)
...|..++..|..+ ..--..|..|+.|- ..+ +. ......+|++++.... -+.+|+.++.+
T Consensus 52 ~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~-- 129 (223)
T 4aez_C 52 QKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY-- 129 (223)
T ss_dssp HHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc--
Confidence 45667777777663 34456888999983 221 21 3357789999886532 36788877743
Q ss_pred HcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1029 SRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1029 ~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
....+.+|.-......+..++.+|..|..+.-.. |++.+|..||.+||+.|---......++..|
T Consensus 130 -----~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~-g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 194 (223)
T 4aez_C 130 -----IDEPVELFSFLAHHHIGQESSIFYEEYANYFESR-GLFQKADEVYQKGKRMKAKPFLRFQQKYQQF 194 (223)
T ss_dssp -----CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCBSHHHHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 2356689998888888899999999999988875 9999999999999999966566555555544
No 149
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.23 E-value=1.6 Score=52.96 Aligned_cols=169 Identities=9% Similarity=0.049 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001167 921 WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLS-------LSTVWETTLHGLQIYPYSPKLFNTLVEI 993 (1134)
Q Consensus 921 ~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~-------l~~~R~~l~~aL~~fP~N~~ll~~~~~l 993 (1134)
-++|+..+++++..- |.+-.+|..+..++...++..+ +..+...+.++|..+|+|...|..-..+
T Consensus 45 ~eeal~~~~~~l~~n--------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 45 DESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp SHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999998853 4566788888888776553211 5677788999999999999999654444
Q ss_pred HhhCC--ChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHH--HHHhHHHh-
Q 001167 994 SNLYT--TPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRW--YIAYEVYI- 1067 (1134)
Q Consensus 994 E~~~~--~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~--YI~fE~~~- 1067 (1134)
-...+ .++++-.++++++..+| ....|-.-.+.=...+.....+...++++|. ..+.+...|.. ++...+..
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccc
Confidence 45666 67999999999999988 6677743322211222267888899999998 56667777754 33333200
Q ss_pred ----------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1068 ----------ASNPFAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1068 ----------~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
.+.++.|-+.+.+||...|.+...|.-.-..+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 13468899999999999999999997654444
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.22 E-value=0.63 Score=47.09 Aligned_cols=109 Identities=9% Similarity=-0.019 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFER 1043 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFEr 1043 (1134)
+....+...+.+++..+|.++..... .+.. ..+.+. ...|.....+-+.. |....|...|++
T Consensus 52 ~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~------~~~~~~---------~~~~~~la~~~~~~-~~~~~A~~~~~~ 113 (198)
T 2fbn_A 52 NEINEAIVKYKEALDFFIHTEEWDDQ--ILLD------KKKNIE---------ISCNLNLATCYNKN-KDYPKAIDHASK 113 (198)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCH--HHHH------HHHHHH---------HHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccchh--hHHH------HHHHHH---------HHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 56778889999999999988632110 0000 000000 11221111111223 677788888888
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
|+. ..+.++..|.......... |+++.|...|.+|+...|.+..++.
T Consensus 114 al~--~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 114 VLK--IDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHH--HSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHH--hCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 887 3455666666666655554 7888888888888888887776554
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.12 E-value=0.98 Score=41.52 Aligned_cols=99 Identities=11% Similarity=-0.067 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----HHHHHHHHHHHHHcCCCchH
Q 001167 964 LSLSTVWETTLHGLQIYPYSP---KLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS----LVVSLFALAFEMSRKGPPHR 1036 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~---~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps----~~~wlfaI~~E~~r~g~~~r 1036 (1134)
+....+...+.+++..+|++. ..+..++......+..+.+...|++++...|. ...+.....+-... |....
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~-g~~~~ 94 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE-GKNTE 94 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc-CCHHH
Confidence 567889999999999999998 45555666667789999999999999988773 44443333333334 89999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 1037 IRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 1037 aRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
|+..|++++. ..|.++..+.....+..
T Consensus 95 A~~~~~~~~~--~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 95 AQQTLQQVAT--QYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHHH--HSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HCCCChHHHHHHHHHHH
Confidence 9999999998 45677777766655443
No 152
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.05 E-value=1.5 Score=44.19 Aligned_cols=123 Identities=4% Similarity=-0.109 Sum_probs=88.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001167 911 AALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTL 990 (1134)
Q Consensus 911 ~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~ 990 (1134)
.+...+..++++.|+..|++++. + . ..+|...+..... .+....+...+.+++...|.+...|..+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~---~-------~-~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQD---P-------H-SRICFNIGCMYTI---LKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSS---C-------C-HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcC---C-------C-hHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 34555567889999999997741 1 1 2345445544432 3567889999999999999999888878
Q ss_pred HHHHhhCCChhHHHHHHHHHHhhCCC-----------------HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCC
Q 001167 991 VEISNLYTTPNKLRWIFDLYCHKKPS-----------------LVVSLFALAFEMSRKGPPHRIRGLFERALAND 1048 (1134)
Q Consensus 991 ~~lE~~~~~~~raR~il~~~~~~~ps-----------------~~~wlfaI~~E~~r~g~~~raRalFErAl~s~ 1048 (1134)
+.+....+..+.+...|.+++...|. ...|......-... |....|...|++|+...
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcC
Confidence 88877889999999999999986652 13342222222233 79999999999999843
No 153
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.91 E-value=14 Score=49.17 Aligned_cols=131 Identities=10% Similarity=-0.025 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-HHHH-HHHHHHHHHcCCCchHHHHHHHHHhcCCC---CCCCHHHHH
Q 001167 984 PKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-LVVS-LFALAFEMSRKGPPHRIRGLFERALANDT---VRCSVVLWR 1058 (1134)
Q Consensus 984 ~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-~~~w-lfaI~~E~~r~g~~~raRalFErAl~s~~---~~~s~~LWr 1058 (1134)
+..+...+.+....|-++.+-.+|+.++..++. ...| -+++-.=..+++..-..-.+|+..++.++ ......||.
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Confidence 333334555556677888888888888766552 2233 11221100122333444456776666433 124567888
Q ss_pred HHHHhHHHhcCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHhhhccChHHHHHHHHHhh
Q 001167 1059 WYIAYEVYIASNPFAARRIFFRAIHA------------CPWSKRLWLDGFLKLNSILTAKELSDLQEVMR 1116 (1134)
Q Consensus 1059 ~YI~fE~~~~~n~~rAR~Vf~RAL~~------------CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~ 1116 (1134)
-++-+-... +++++|-.++-.+... .+-+.+||.-++..+- ...|.-|.+++.+++
T Consensus 1360 elv~LY~~~-~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl-~~~P~~lndLl~~l~ 1427 (1630)
T 1xi4_A 1360 ELVFLYDKY-EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL-EFKPLLLNDLLMVLS 1427 (1630)
T ss_pred HHHHHHHhc-ccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH-hhChHHHHHHHHHhh
Confidence 877776664 7887776333333222 4666777777776421 123667777777775
No 154
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.80 E-value=1.3 Score=49.50 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-------CHHHHH
Q 001167 951 NFNVRMLQRHHKQLSLSTVWETTLHGLQIYP--YSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-------SLVVSL 1021 (1134)
Q Consensus 951 ~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP--~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-------s~~~wl 1021 (1134)
...++++... +++..+...+.++|..-| .+.......+++....+..+.|+.+|.++...+| ++.+.+
T Consensus 104 ~~la~i~~~~---g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 104 YLLATAQAIL---GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHH---TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 3455555443 578889999999999887 7788887888888889999999999999988887 445555
Q ss_pred HHHHHHHHcC-CCchHHHHHHHHHhcCCCCCC---CHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh----------CCC
Q 001167 1022 FALAFEMSRK-GPPHRIRGLFERALANDTVRC---SVVLWRWYIAYEVYIASNPFAARRIFFRAIHA----------CPW 1087 (1134)
Q Consensus 1022 faI~~E~~r~-g~~~raRalFErAl~s~~~~~---s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~----------CPw 1087 (1134)
.-.+..+..| +....+-.+|+.+.. ..+. ...||.+| +.+ |+++.|..++.+.+.. -|.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~----~~~-g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLH----LQQ-RNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHH----HHH-TCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHH----HHc-CCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 5555566554 368999999999887 4444 45677743 334 9999999999977665 377
Q ss_pred cHHHHHHHH
Q 001167 1088 SKRLWLDGF 1096 (1134)
Q Consensus 1088 sK~L~m~a~ 1096 (1134)
+.....-.+
T Consensus 254 ~~~~LaN~i 262 (310)
T 3mv2_B 254 KPTFLANQI 262 (310)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 777665554
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.78 E-value=0.16 Score=47.01 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHhhh---cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCC
Q 001167 766 SVTPCQPLAKGLLKS---DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNS 842 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~---~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~ 842 (1134)
+...|....+..|+. +|.+...|...|.+....|+++.|.+.|++|+...|. ...++..++......|.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--------HQALRVFYAMVLYNLGR 76 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHcCC
Confidence 467888999999998 6999999999999999999999999999999998873 24566666766666653
Q ss_pred CCCCchHHHHHHHHH
Q 001167 843 GSDPDSSLRAIHVLS 857 (1134)
Q Consensus 843 ~~~~e~~~rAi~iL~ 857 (1134)
...|+..+.
T Consensus 77 ------~~~A~~~~~ 85 (117)
T 3k9i_A 77 ------YEQGVELLL 85 (117)
T ss_dssp ------HHHHHHHHH
T ss_pred ------HHHHHHHHH
Confidence 567776653
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.65 E-value=0.57 Score=50.94 Aligned_cols=96 Identities=6% Similarity=-0.090 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.++|...|.+..+|..++......+.++.|...|++++...| +...|......-... |....|...|+
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 96 (281)
T 2c2l_A 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM-ESYDEAIANLQ 96 (281)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 5677888999999999999998887777777778889999999999888877 455553322222233 78899999999
Q ss_pred HHhcCCC---CCCCHHHHHHH
Q 001167 1043 RALANDT---VRCSVVLWRWY 1060 (1134)
Q Consensus 1043 rAl~s~~---~~~s~~LWr~Y 1060 (1134)
+|+.... ......+|..+
T Consensus 97 ~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 97 RAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHhCccchhhHHHHHHHHH
Confidence 9987321 12235666654
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.53 E-value=0.12 Score=61.34 Aligned_cols=120 Identities=7% Similarity=-0.217 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFE 1042 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFE 1042 (1134)
+....+...+.++|+..|.+...|..++......+..+.|...|++++...| ....|......-... |....|...|+
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~ 98 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDYE 98 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 4677899999999999999999888777777888999999999999999888 455553322222233 78999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHh--HHHhcCCHHHHHHHHH-----------HHHHhCCC
Q 001167 1043 RALANDTVRCSVVLWRWYIAY--EVYIASNPFAARRIFF-----------RAIHACPW 1087 (1134)
Q Consensus 1043 rAl~s~~~~~s~~LWr~YI~f--E~~~~~n~~rAR~Vf~-----------RAL~~CPw 1087 (1134)
+|+.. .+.+...|..+... .... |++++|..++. +|+...|.
T Consensus 99 ~al~~--~p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 99 TVVKV--KPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHH--STTCTTHHHHHHHHHHHHHH-HHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHHHH-HHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99983 45555566655544 4443 77888888888 77776664
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.39 E-value=0.74 Score=53.97 Aligned_cols=105 Identities=8% Similarity=-0.200 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYS---------------PKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFE 1027 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N---------------~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E 1027 (1134)
..+..+...+.++|...|.+ ..+|..++......+.++.|...|.+++...| +...|......-
T Consensus 282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~ 361 (457)
T 1kt0_A 282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361 (457)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 46778889999999999998 34444445555566777777777777777666 344443222222
Q ss_pred HHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHH
Q 001167 1028 MSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPF 1072 (1134)
Q Consensus 1028 ~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~ 1072 (1134)
+.. +....|+..|++|+. ..+.+...|.......... ++.+
T Consensus 362 ~~~-g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~-~~~~ 402 (457)
T 1kt0_A 362 LLM-NEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKA-KEHN 402 (457)
T ss_dssp HHT-TCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHH-HHHH
T ss_pred HHc-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH-HHHH
Confidence 223 677777777777776 3445555555555544443 4443
No 159
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=93.21 E-value=8.5 Score=39.41 Aligned_cols=160 Identities=9% Similarity=-0.045 Sum_probs=97.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLV 991 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~ 991 (1134)
+.+.+..++++.|+..|++++..- ..+ .+...+.+....+...+..++...+.+++. +.++.-+..+.
T Consensus 25 g~~~~~~~~~~~A~~~~~~a~~~g---------~~~-a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 25 ADTWVSSGDYQKAEYWAQKAAAQG---------DGD-ALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT---------CHH-HHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcC---------CHH-HHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 444444689999999999998741 112 222223222221112267788899999976 45655444444
Q ss_pred HHHhh----CCChhHHHHHHHHHHhhCCC---HHHH-HHHHHHHHHc--CCCchHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 001167 992 EISNL----YTTPNKLRWIFDLYCHKKPS---LVVS-LFALAFEMSR--KGPPHRIRGLFERALANDTVRCSVVLWRWYI 1061 (1134)
Q Consensus 992 ~lE~~----~~~~~raR~il~~~~~~~ps---~~~w-lfaI~~E~~r--~g~~~raRalFErAl~s~~~~~s~~LWr~YI 1061 (1134)
.+-.. .+...++...|.++....++ ...+ ..+..+.... .++..+|...|++|+... ........+-.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 44433 56789999999999988774 4433 3344333222 257899999999999841 12222222222
Q ss_pred HhHHHh----cCCHHHHHHHHHHHHHhC
Q 001167 1062 AYEVYI----ASNPFAARRIFFRAIHAC 1085 (1134)
Q Consensus 1062 ~fE~~~----~~n~~rAR~Vf~RAL~~C 1085 (1134)
.++... ..+.++|..+|.+|+..=
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 222211 138999999999999863
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.19 E-value=1.1 Score=45.23 Aligned_cols=77 Identities=9% Similarity=-0.185 Sum_probs=43.7
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHH
Q 001167 987 FNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEV 1065 (1134)
Q Consensus 987 l~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~ 1065 (1134)
|..++......+.++.+...+.+++...| ....|......-... |....|...|++|+. ..+.+..+|..+.....
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAAS--LNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHH
Confidence 33344444556677777777777776665 344443222222223 567777777777776 34556666666555554
Q ss_pred H
Q 001167 1066 Y 1066 (1134)
Q Consensus 1066 ~ 1066 (1134)
.
T Consensus 168 ~ 168 (198)
T 2fbn_A 168 K 168 (198)
T ss_dssp H
T ss_pred H
Confidence 4
No 161
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.08 E-value=0.59 Score=42.71 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCC
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
|....|...|++|+. ..+.++..|..+....... |+++.|...|.+|+...|.
T Consensus 33 g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 33 EQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQ-GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccc
Confidence 555666666666665 3345566666665555554 7777777777777776663
No 162
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.04 E-value=8.5 Score=45.66 Aligned_cols=169 Identities=8% Similarity=-0.028 Sum_probs=101.5
Q ss_pred HhhccCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHhhCC---------ChhHHHHHHHHHHhh--CCCHHHHHHHHHH
Q 001167 959 RHHKQLSLSTVWETTLHGLQI-YPYSPKLFNTLVEISNLYT---------TPNKLRWIFDLYCHK--KPSLVVSLFALAF 1026 (1134)
Q Consensus 959 ~~~~~~~l~~~R~~l~~aL~~-fP~N~~ll~~~~~lE~~~~---------~~~raR~il~~~~~~--~ps~~~wlfaI~~ 1026 (1134)
.+++.+.+..+.+++.+.... ++-|...|..++..-...+ ..+++..+|+..... .|+...|-..|..
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 344556676677776665543 3334444555554433222 246777788776654 4567766444443
Q ss_pred HHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHhhhccCh
Q 001167 1027 EMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHA-CPWSKRLWLDGFLKLNSILTA 1105 (1134)
Q Consensus 1027 E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~-CPwsK~L~m~a~~~l~~~~~~ 1105 (1134)
-... |....|..+|+..... .+.-+...|...|.-..+. |+++.|..||..-... |.-+...|..-+..+...=..
T Consensus 115 ~~~~-g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 115 AVAK-DDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHH-TCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHhc-CCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 3333 7788888888877753 2344577777777766664 8888888888876654 222333454444433333346
Q ss_pred HHHHHHHHHhhhcCcccccchHHhh
Q 001167 1106 KELSDLQEVMRDKELNLRTDIYEIL 1130 (1134)
Q Consensus 1106 ~EL~~l~dvM~EKeLRir~dleE~l 1130 (1134)
++..++++-|.+.|+.+-....++|
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 7888888888888877665555544
No 163
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=92.99 E-value=1.3 Score=46.18 Aligned_cols=128 Identities=7% Similarity=-0.061 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHh--CCCC--HHHHHHHHHHHh-h---CCC--hhHH-HHHHHHHHhhCC----------CHHHHHHHHH
Q 001167 967 STVWETTLHGLQI--YPYS--PKLFNTLVEISN-L---YTT--PNKL-RWIFDLYCHKKP----------SLVVSLFALA 1025 (1134)
Q Consensus 967 ~~~R~~l~~aL~~--fP~N--~~ll~~~~~lE~-~---~~~--~~ra-R~il~~~~~~~p----------s~~~wlfaI~ 1025 (1134)
...|..++..|.. +-.+ -..|..|+.|-. . .+. .... +.+|++++.... -+.+|+.++.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 4466667766665 4332 457889999832 1 111 1223 488888876421 4688987775
Q ss_pred HHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001167 1026 FEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFL 1097 (1134)
Q Consensus 1026 ~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~ 1097 (1134)
+ -..++....+.+|.-......+..++.+|..|..+.-.. |++.+|..||.+||+.|---......++.
T Consensus 89 ~--~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~-g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~ 157 (202)
T 3esl_A 89 L--FLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENA-QFFLEAKVLLELGAENNCRPYNRLLRSLS 157 (202)
T ss_dssp H--HSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCBSHHHHHHHHH
T ss_pred h--hcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 4 111346688899999888888899999999999988875 99999999999999998655554444443
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.98 E-value=2.3 Score=38.42 Aligned_cols=96 Identities=3% Similarity=-0.092 Sum_probs=51.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC-------
Q 001167 911 AALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS------- 983 (1134)
Q Consensus 911 ~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N------- 983 (1134)
.+...+..++++.|...|++++...+ ....++...+.+.... +....+...+.+++...|.+
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDP--------TNMTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccccchhHHHH
Confidence 33444455677777777777766532 1123333334333222 34556666777777766655
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCH
Q 001167 984 PKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSL 1017 (1134)
Q Consensus 984 ~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~ 1017 (1134)
...+..++......+..+.+...|.+++...|+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 112 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCH
Confidence 4444444444445556666666666665555543
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.90 E-value=1.2 Score=43.26 Aligned_cols=56 Identities=9% Similarity=-0.090 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
|....|...|++||. ..+.++..|.......... |+++.|...|.+|+...|.++.
T Consensus 77 ~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 77 GDLHEAEETSSEVLK--REETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGHH
T ss_pred CcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCHH
Confidence 788999999999998 4566777777766666665 9999999999999999999883
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=92.84 E-value=4.7 Score=39.83 Aligned_cols=171 Identities=12% Similarity=-0.010 Sum_probs=89.9
Q ss_pred CChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCc
Q 001167 768 TPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPD 847 (1134)
Q Consensus 768 k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e 847 (1134)
..|+++++.+....+.....|...|.+....|+++.|...|++|+......... ......+...+.+....|+
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----- 81 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH--TAEHRALHQVGMVERMAGN----- 81 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHcCC-----
Confidence 344554434433333677889999999999999999999999999876532110 0111233333444444432
Q ss_pred hHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHH
Q 001167 848 SSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEV 927 (1134)
Q Consensus 848 ~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v 927 (1134)
+..|+.. |.+.+.... ..+.............+...+..++++.|...
T Consensus 82 -~~~A~~~----------------------------~~~al~~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 129 (203)
T 3gw4_A 82 -WDAARRC----------------------------FLEERELLA---SLPEDPLAASANAYEVATVALHFGDLAGARQE 129 (203)
T ss_dssp -HHHHHHH----------------------------HHHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -HHHHHHH----------------------------HHHHHHHHH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344333 333222110 00000001122233455566667899999999
Q ss_pred HHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC
Q 001167 928 LHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 928 ~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~ 982 (1134)
|++++...... ......-..+...+.+.. ..+....+...+.+++..+..
T Consensus 130 ~~~al~~~~~~--~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 130 YEKSLVYAQQA--DDQVAIACAFRGLGDLAQ---QEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHHHHH---HCcCHHHHHHHHHHHHHHHHH
Confidence 99998763211 000111122222333322 234566777777777766543
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.71 E-value=3.4 Score=38.55 Aligned_cols=153 Identities=9% Similarity=-0.079 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCC
Q 001167 785 VLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGST 864 (1134)
Q Consensus 785 l~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~ 864 (1134)
...|...|.+....|+++.|...|.+|+...+..... ......+...+.+....++ ...|+..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~------~~~A~~~~-------- 72 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERIAYSNLGNAYIFLGE------FETASEYY-------- 72 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTC------HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHcCC------HHHHHHHH--------
Confidence 3567778888899999999999999999887621100 0011234444444444432 44444433
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCc
Q 001167 865 YTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSH 944 (1134)
Q Consensus 865 ~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~ 944 (1134)
+..+..... .+. ...........+...+..+.++.|...+++++...... ....
T Consensus 73 --------------------~~a~~~~~~---~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~ 126 (164)
T 3ro3_A 73 --------------------KKTLLLARQ---LKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRI 126 (164)
T ss_dssp --------------------HHHHHHHHH---TTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred --------------------HHHHHHHHH---hCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchH
Confidence 222211100 000 00111223345566667789999999999998864211 0011
Q ss_pred cHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC
Q 001167 945 QLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 945 ~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~ 982 (1134)
..-..+...+.+... .+....+...+.+++..+..
T Consensus 127 ~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 127 GEGRACWSLGNAYTA---LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHH
Confidence 112223333333322 24566777788887776554
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.63 E-value=3.9 Score=46.36 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhC-C-
Q 001167 921 WTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLY-T- 998 (1134)
Q Consensus 921 ~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~-~- 998 (1134)
-+.|+.++++++..- |.+-.+|..+..++...+ ..+......+..+|..+|+|...|..-..+-... +
T Consensus 70 se~AL~lt~~~L~~n--------P~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 70 SERALELTEIIVRMN--------PAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp SHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 467899999998863 455678888888876543 2477788899999999999999996433332232 4
Q ss_pred ChhHHHHHHHHHHhhCC-CHHHHHHHHHH--HHHcCCC-----chHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCC
Q 001167 999 TPNKLRWIFDLYCHKKP-SLVVSLFALAF--EMSRKGP-----PHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASN 1070 (1134)
Q Consensus 999 ~~~raR~il~~~~~~~p-s~~~wlfaI~~--E~~r~g~-----~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n 1070 (1134)
..++.-.++++++..+| +...|..-.+. .+.+-.. .......++++|. ..+.+...|..-...... .+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~-l~~ 216 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVS-RPG 216 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTT-STT
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh-ccc
Confidence 66788899999998888 66667432221 2222110 1377788899988 567778888653332222 233
Q ss_pred -------HHHHHHHHHHHHHhCCCcHHHHHH
Q 001167 1071 -------PFAARRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1071 -------~~rAR~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
++.+-..+.+||...|.+...|.-
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y 247 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNY 247 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 678899999999999999998854
No 169
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.38 E-value=0.71 Score=46.45 Aligned_cols=96 Identities=10% Similarity=0.142 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHhhhhhhcccccccchhhHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHhhc-
Q 001167 261 LRKTKEFNKLTREHPYDVKGWLEFADFQDVVGSKESKRGVRLQILEKKISILEKAVELNPDNEEL----LLSLMKAYQS- 335 (1134)
Q Consensus 261 ~~r~~eln~~v~e~P~Di~~Wl~li~~Qd~~~~~~~~k~~~~~~~E~KlsilekAL~~~p~~~~L----ll~~l~~~~~- 335 (1134)
..=...+.+.++.+|.|.++|+.+-...-++..+... ...+...+.-++.|++||+.+|++... =..|...+.-
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g-~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI-SDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh-hhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 3456778899999999999999887765444332211 113446788999999999999999763 3344443321
Q ss_pred ------cCCHHHHHHHHHHHHHhCCCCH
Q 001167 336 ------RDGTDVLIRRWEKILMQHSGSY 357 (1134)
Q Consensus 336 ------~w~~~~l~~~W~~~l~~~p~~~ 357 (1134)
.-.-++-.+-+++.|..+|++.
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 1135677888999999999863
No 170
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=92.34 E-value=1.8 Score=43.66 Aligned_cols=120 Identities=8% Similarity=-0.012 Sum_probs=83.3
Q ss_pred HHHHHHHhCCCC--HHHHHHHHHHH-hhC---CChhHHHHHHHHHHhhCC----------CHHHHHHHHHHHHHcCCCch
Q 001167 972 TTLHGLQIYPYS--PKLFNTLVEIS-NLY---TTPNKLRWIFDLYCHKKP----------SLVVSLFALAFEMSRKGPPH 1035 (1134)
Q Consensus 972 ~l~~aL~~fP~N--~~ll~~~~~lE-~~~---~~~~raR~il~~~~~~~p----------s~~~wlfaI~~E~~r~g~~~ 1035 (1134)
.++..|..+-.+ -..|..|+.|- ..+ +.......+|++++.... -+.+|+.++.+ . .
T Consensus 5 ~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~--~-----~ 77 (164)
T 2wvi_A 5 AFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL--C-----N 77 (164)
T ss_dssp HHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH--C-----S
T ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh--c-----C
Confidence 344455444322 35677788773 222 222345667888776532 36788877754 2 2
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Q 001167 1036 RIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGFLKL 1099 (1134)
Q Consensus 1036 raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l 1099 (1134)
..+.+|.-......+..++.+|..|..+.-.. |++.+|..||.+||+.+---......++..|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~-~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F 140 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEAR-ENFRKADAIFQEGIQQKAEPLERLQSQHRQF 140 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 36678888888888899999999999987775 9999999999999999977677666776655
No 171
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.26 E-value=5 Score=44.32 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHhh-----CCChhHHHHHHHHHHhhCC--CHHHHHHHHHHHHHcCCCchHH
Q 001167 967 STVWETTLHGLQIYPY--SPKLFNTLVEISNL-----YTTPNKLRWIFDLYCHKKP--SLVVSLFALAFEMSRKGPPHRI 1037 (1134)
Q Consensus 967 ~~~R~~l~~aL~~fP~--N~~ll~~~~~lE~~-----~~~~~raR~il~~~~~~~p--s~~~wlfaI~~E~~r~g~~~ra 1037 (1134)
..++..++++|++-|+ +-.-|..+..+... .|..+++|..|++++..+| ++.+++|+..+-....+....+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4677778888888888 44445444444433 3455555555555555544 2444444444322212444555
Q ss_pred HHHHHHHhc
Q 001167 1038 RGLFERALA 1046 (1134)
Q Consensus 1038 RalFErAl~ 1046 (1134)
+..+++|+.
T Consensus 260 ~~~L~kAL~ 268 (301)
T 3u64_A 260 DEALDRALA 268 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555554
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=92.18 E-value=5.7 Score=43.25 Aligned_cols=130 Identities=5% Similarity=0.026 Sum_probs=82.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC------HH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS------PK 985 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N------~~ 985 (1134)
+......++++.|+..|++++...... ......-..+...+.+. .. +.+..+...+.++|..+|.. ..
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~---~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLM---EP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHH---TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH---Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 333444578999999999999875321 00011122333333332 23 57888999999999999864 23
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHhhCC---C----HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC
Q 001167 986 LFNTLVEISNLYTTPNKLRWIFDLYCHKKP---S----LVVSLFALAFEMSRKGPPHRIRGLFERALANDT 1049 (1134)
Q Consensus 986 ll~~~~~lE~~~~~~~raR~il~~~~~~~p---s----~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~ 1049 (1134)
.+..+..+-...+..+.+...|++++...+ . ...++-.+.+-+.. |....|...|++++ ..+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHh-CCC
Confidence 444455666678999999999999886532 1 12333333333334 78999999999999 543
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.06 E-value=2.5 Score=39.46 Aligned_cols=68 Identities=7% Similarity=-0.123 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY 982 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~ 982 (1134)
..+...+..++++.|+..|.+++....... .....-..+...+.+.. ..+....+...+.+++..++.
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYI---FLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHH
Confidence 455666677899999999999988642110 00001112222222222 234566666666666665543
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.03 E-value=0.26 Score=57.90 Aligned_cols=105 Identities=9% Similarity=-0.094 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----------------HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCC
Q 001167 986 LFNTLVEISNLYTTPNKLRWIFDLYCHKKPS----------------LVVSLFALAFEMSRKGPPHRIRGLFERALANDT 1049 (1134)
Q Consensus 986 ll~~~~~lE~~~~~~~raR~il~~~~~~~ps----------------~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~ 1049 (1134)
.|..........+.+..|...|.+++...|. ...|.....+-+.. +....|...|++||. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~--~ 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKALG--L 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHh--c
Confidence 3433444445677889999999998887663 35554333333334 789999999999998 4
Q ss_pred CCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001167 1050 VRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1050 ~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
.+.++..|.......... |+++.|...|.+|+...|.+...|..
T Consensus 347 ~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp STTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHH
T ss_pred CCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 566777776666666664 99999999999999999988766543
No 175
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.02 E-value=11 Score=40.47 Aligned_cols=165 Identities=9% Similarity=-0.104 Sum_probs=98.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC------HHH
Q 001167 913 LFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS------PKL 986 (1134)
Q Consensus 913 lfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N------~~l 986 (1134)
...+..++++.|...|.+++....... .......+....... +...+....+...+.++|...+.+ ...
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHP---EFQQFLQWQYYVAAY--VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHH--HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCCh---hHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334456789999999999888532110 000111122222222 223356778889999999887665 223
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHH---hhCCC-H----HHH-HHHHHHHHHcCCCchHHHHHHHHHhcCCCC----CCC
Q 001167 987 FNTLVEISNLYTTPNKLRWIFDLYC---HKKPS-L----VVS-LFALAFEMSRKGPPHRIRGLFERALANDTV----RCS 1053 (1134)
Q Consensus 987 l~~~~~lE~~~~~~~raR~il~~~~---~~~ps-~----~~w-lfaI~~E~~r~g~~~raRalFErAl~s~~~----~~s 1053 (1134)
+...+.+....+..+.|..+|.+++ ...+. . ..+ ..+..+ ... |....|...|++|+..... ..-
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y-~~~-~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL-YLD-SRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH-HHH-hhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4344455567889999999999987 44442 1 222 122222 223 7899999999999963110 111
Q ss_pred HHHHHHHHHhHHHhcCCHHHH-HHHHHHHHHhC
Q 001167 1054 VVLWRWYIAYEVYIASNPFAA-RRIFFRAIHAC 1085 (1134)
Q Consensus 1054 ~~LWr~YI~fE~~~~~n~~rA-R~Vf~RAL~~C 1085 (1134)
+.++.......... |+.+.| ...|.+|+..+
T Consensus 236 ~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKL-EYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHH
Confidence 44444444444444 889999 88899998743
No 176
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.01 E-value=0.65 Score=39.78 Aligned_cols=52 Identities=13% Similarity=-0.014 Sum_probs=48.0
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.+...|.+.++..++.+|.+...|..+|.+....|+++.|.+.|++++...|
T Consensus 23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3467788999999999999999999999999999999999999999999877
No 177
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.86 E-value=18 Score=41.90 Aligned_cols=44 Identities=9% Similarity=-0.049 Sum_probs=32.3
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhcc
Q 001167 770 CQPLAKGLLKSDRQDVLLCGVYARREAFFG---NIDHARRVFDMALSSIE 816 (1134)
Q Consensus 770 aRk~aK~LLk~~~~nl~LW~aYA~lE~~~G---n~e~ARkVf~tALs~~~ 816 (1134)
+..+.+..++.+|. -+...|.+....| +++.|.+.|.+|....+
T Consensus 164 a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 164 VERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp HHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence 44445555555555 6667777777799 99999999999988765
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.38 E-value=2.2 Score=41.35 Aligned_cols=104 Identities=10% Similarity=-0.061 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccC----------CccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSC----------SHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI 979 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~----------~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~ 979 (1134)
..+...+..+.++.|+..|.+++..+....... .+..-.+|...+.... ..+....+...+.++|..
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---NIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhc
Confidence 345555667899999999999998742110000 1222234444443332 234677788888888888
Q ss_pred CCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC
Q 001167 980 YPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS 1016 (1134)
Q Consensus 980 fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps 1016 (1134)
.|++...|...+..-...+.++.+...|.+++...|.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 8998887766666666778888888888888877774
No 179
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.18 E-value=5.4 Score=45.51 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHhhCCC----hhHHHHHHHHHH--hhCC-CH-HHHHHHHHHHHHcCC
Q 001167 965 SLSTVWETTLHGLQIYPYSPKLFNT----LVEISNLYTT----PNKLRWIFDLYC--HKKP-SL-VVSLFALAFEMSRKG 1032 (1134)
Q Consensus 965 ~l~~~R~~l~~aL~~fP~N~~ll~~----~~~lE~~~~~----~~raR~il~~~~--~~~p-s~-~~wlfaI~~E~~r~g 1032 (1134)
.+.+++.++++||+..|.+...|.. |+..-..... ...++..+.... ...| .. ..+..++.+ +.. |
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~-l~~-g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA-LVK-G 291 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHH-HHH-T
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHH-HhC-C
Confidence 3578999999999999999765542 2211111111 122233333221 1122 23 333444433 334 8
Q ss_pred CchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1033 PPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1033 ~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
+...+...+++|+..+ + +..-|.+.-..... .|+.+.|...|.+|++..|....+++
T Consensus 292 d~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~t~~~ 348 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE--M-SWLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcChHHH
Confidence 9999999999999853 3 44444333333333 59999999999999999999876544
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.06 E-value=0.81 Score=41.14 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=43.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 001167 780 SDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVL 856 (1134)
Q Consensus 780 ~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL 856 (1134)
.+|++...|..+|.+....|+++.|...|++|+...|.. ...|...+.+....|. ...|+..+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~a~~~lg~~~~~~g~------~~~A~~~~ 64 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY--------VGTYYHLGKLYERLDR------TDDAIDTY 64 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------THHHHHHHHHHHHTTC------HHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHcCC------HHHHHHHH
Confidence 468888888888888888888888888888888877732 2456666666665543 44555544
No 181
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.96 E-value=0.63 Score=51.40 Aligned_cols=87 Identities=16% Similarity=0.049 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHhhCCCH---HHHHHHHHHHHHc----CCCchHHHHHHHHHhcCCCCCC-CHHHHHHHHHhHHHhcCCH
Q 001167 1000 PNKLRWIFDLYCHKKPSL---VVSLFALAFEMSR----KGPPHRIRGLFERALANDTVRC-SVVLWRWYIAYEVYIASNP 1071 (1134)
Q Consensus 1000 ~~raR~il~~~~~~~ps~---~~wlfaI~~E~~r----~g~~~raRalFErAl~s~~~~~-s~~LWr~YI~fE~~~~~n~ 1071 (1134)
...++.+++++++..|.. ..|.+...+.... +|+..+|+..|++||. .++. +...+..|.+|.....++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 457899999999999973 4565444444443 4899999999999998 5564 5899999999998745899
Q ss_pred HHHHHHHHHHHHhCCCc
Q 001167 1072 FAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1072 ~rAR~Vf~RAL~~CPws 1088 (1134)
+.|+..|.+||+.-|..
T Consensus 257 ~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 257 AGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 99999999999987763
No 182
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=90.91 E-value=3.8 Score=44.15 Aligned_cols=161 Identities=6% Similarity=-0.090 Sum_probs=94.2
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHH------HHHH
Q 001167 916 ELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPK------LFNT 989 (1134)
Q Consensus 916 ~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~------ll~~ 989 (1134)
+..++++.|..+|++++..... .+....+...+-.+-..+........+...+.++|...+.+.. ++..
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEY-----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccC-----ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4457899999999988774211 1121211111111222223345678888999999997655432 2333
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhh---C-CC--H--HHH--HHHHHHHHHcCCCchHHHHHHHHHhcCCC----CCCCHH
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHK---K-PS--L--VVS--LFALAFEMSRKGPPHRIRGLFERALANDT----VRCSVV 1055 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~---~-ps--~--~~w--lfaI~~E~~r~g~~~raRalFErAl~s~~----~~~s~~ 1055 (1134)
++..-...+..+.|..+|.+++.. . .. . ..+ +-.++. .. |....|...|++|+.... ...-+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~--~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--LD-SRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH--HT-TCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--HH-hHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 444455778899999999988742 2 11 1 122 222222 23 789999999999996311 111144
Q ss_pred HHHHHHHhHHHhcC-CHHHHHHHHHHHHHhC
Q 001167 1056 LWRWYIAYEVYIAS-NPFAARRIFFRAIHAC 1085 (1134)
Q Consensus 1056 LWr~YI~fE~~~~~-n~~rAR~Vf~RAL~~C 1085 (1134)
+|...-...... | .++.|...|.+|+..+
T Consensus 238 ~~~~lg~~~~~~-g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKL-EYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHH
Confidence 444444444444 6 4699999999998754
No 183
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.53 E-value=2.5 Score=46.57 Aligned_cols=140 Identities=4% Similarity=-0.222 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC---HHHHHH
Q 001167 946 LEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS---LVVSLF 1022 (1134)
Q Consensus 946 ~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps---~~~wlf 1022 (1134)
.-.+++.|+.++... +.+..++++|...+...|.+...| ...-+-...+.+..+...|+.+....+. ...+++
T Consensus 101 r~dl~LayA~~L~~~---g~y~eA~~~l~~~~~~~p~~~~~~-~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 101 PLAITMGFAACEAAQ---GNYADAMEALEAAPVAGSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHHHHHHHHHHHH---TCHHHHHHHHTSSCCTTCHHHHHH-HHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 567888888877554 457788888888888888776333 3444556778999999999866544322 223433
Q ss_pred HHHHHHHcCCCchHHHHHHHHHhcCCCCCC-CHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1023 ALAFEMSRKGPPHRIRGLFERALANDTVRC-SVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1023 aI~~E~~r~g~~~raRalFErAl~s~~~~~-s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
.-..-... |....|...|++++..+..+. .+..|..+......+ |+.+.|+.+|.+++...|. ...+
T Consensus 177 LG~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 177 HGVAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCc-HHHH
Confidence 22222233 789999999999996432244 444555555555554 9999999999999999998 6544
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=90.46 E-value=11 Score=41.80 Aligned_cols=165 Identities=8% Similarity=0.036 Sum_probs=111.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCC-----CCHHH
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYP-----YSPKL 986 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP-----~N~~l 986 (1134)
|...+..++++.|+.++.+++..-+ ....-.++...++++.. .+.+..+++.+.+..+..| ....+
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~------~~~~lea~~l~vqi~L~---~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDE------AEGTTELLLLAIEVALL---NNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSC------STTHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCC------CcCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 3444446899999999998866321 01334445555555543 3568889999999999999 34433
Q ss_pred HHH---HHHHHhhCCChhHHHHHHHHHHhhCCC--HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCC-----C---CCCC
Q 001167 987 FNT---LVEISNLYTTPNKLRWIFDLYCHKKPS--LVVSLFALAFEMSRKGPPHRIRGLFERALAND-----T---VRCS 1053 (1134)
Q Consensus 987 l~~---~~~lE~~~~~~~raR~il~~~~~~~ps--~~~wlfaI~~E~~r~g~~~raRalFErAl~s~-----~---~~~s 1053 (1134)
... ++.+-...+....+-.+|+......|+ ....++. +.+.. |....|..+++..+... + .+.+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln--~~~~~-g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN--LHLQQ-RNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--HHHHH-TCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--HHHHc-CCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 321 223323334688899999999888886 3333444 44455 89999999999766521 1 2557
Q ss_pred HHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1054 VVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1054 ~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
+..-...|.+.... |+ .|.+++.++.+..|.+.-+
T Consensus 255 ~~~LaN~i~l~~~l-gk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 255 PTFLANQITLALMQ-GL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHT-TC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHh-Ch--HHHHHHHHHHHhCCCChHH
Confidence 77777777777765 65 7889999999999988744
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.37 E-value=1.2 Score=50.77 Aligned_cols=60 Identities=10% Similarity=-0.174 Sum_probs=46.0
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLD 1094 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~ 1094 (1134)
+....|...|++|+. ..+.++..|..+....... |+++.|...|.+|++..|.++.++..
T Consensus 287 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 287 SDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp TCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 678888888888887 4456777776666666654 88888999999999988888766543
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=90.24 E-value=1.8 Score=36.85 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=50.1
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
+....|...|++|+. ..+.++..|..+....... |+++.|...|.+|+...|.....|.
T Consensus 23 ~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 23 GDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 788999999999998 4566788888887777775 9999999999999999998876553
No 187
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=90.07 E-value=18 Score=36.85 Aligned_cols=151 Identities=7% Similarity=-0.111 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC----ChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCchHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYT----TPNKLRWIFDLYCHKKPSLVVSLFALAFEMSR--KGPPHRI 1037 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~----~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r--~g~~~ra 1037 (1134)
.+...+...+.+++.. .++.-+..+..+-.. + ...++...|+++............+..+.... .++..++
T Consensus 32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A 108 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHA 108 (212)
T ss_dssp TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHH
Confidence 5778889999999875 455544444444333 4 68899999999976543333333343332211 3688999
Q ss_pred HHHHHHHhcCCCCCC--CHHHHHHHHHhHHH---hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhcc-----ChHH
Q 001167 1038 RGLFERALANDTVRC--SVVLWRWYIAYEVY---IASNPFAARRIFFRAIHACPWSKRLWLDGFLKLNSIL-----TAKE 1107 (1134)
Q Consensus 1038 RalFErAl~s~~~~~--s~~LWr~YI~fE~~---~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~-----~~~E 1107 (1134)
...|++|+.. .+. .+.-+...-.+-.. ..++.++|..+|.+|+..-+.....+..|..++...- +.++
T Consensus 109 ~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~ 186 (212)
T 3rjv_A 109 ITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQK 186 (212)
T ss_dssp HHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHH
T ss_pred HHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 9999999983 321 13333222222222 0268999999999999984455667777777765432 4455
Q ss_pred HHHHHHHhhhcC
Q 001167 1108 LSDLQEVMRDKE 1119 (1134)
Q Consensus 1108 L~~l~dvM~EKe 1119 (1134)
=...+..-.+.|
T Consensus 187 A~~~~~~A~~~g 198 (212)
T 3rjv_A 187 ALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 555555544443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.51 E-value=2.5 Score=48.08 Aligned_cols=109 Identities=5% Similarity=-0.176 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCC-CHHHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQ----------------IYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKP-SLVVSLFALAF 1026 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~----------------~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~ 1026 (1134)
.....+...+.++|. ..|.+..+|..++......+.++.|...+++++...| ....|......
T Consensus 237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 316 (370)
T 1ihg_A 237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG 316 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 567889999999998 5566667776677777788999999999999999887 45555433223
Q ss_pred HHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHH
Q 001167 1027 EMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARR 1076 (1134)
Q Consensus 1027 E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~ 1076 (1134)
-... +....|...|++|+. ..+.+..+|..+....... ++.+.+..
T Consensus 317 ~~~~-g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~-~~~~~a~k 362 (370)
T 1ihg_A 317 WQGL-KEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKI-KAQKDKEK 362 (370)
T ss_dssp HHHT-TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2334 789999999999998 4567888888887776654 55554443
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.51 E-value=1.1 Score=45.16 Aligned_cols=26 Identities=4% Similarity=0.041 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001167 967 STVWETTLHGLQIYPYSPKLFNTLVE 992 (1134)
Q Consensus 967 ~~~R~~l~~aL~~fP~N~~ll~~~~~ 992 (1134)
..++..+.++++..|++...|..+..
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~ 44 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGG 44 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45777888899999999887754433
No 190
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.33 E-value=3.9 Score=40.41 Aligned_cols=162 Identities=9% Similarity=-0.069 Sum_probs=90.5
Q ss_pred hcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCC------CHHHHHHHH
Q 001167 918 TNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPY------SPKLFNTLV 991 (1134)
Q Consensus 918 t~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~------N~~ll~~~~ 991 (1134)
.+.++.|..+++.... . ....-.++...+.+... .+.+..+...+.+++..+.. ....+..+.
T Consensus 5 ~g~~~~A~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-H-------PATASGARFMLGYVYAF---MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp --CHHHHHHHHHHHHT-S-------TTTHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC-C-------hHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3567777774442211 1 11223344444444333 35677788888888885532 223333344
Q ss_pred HHHhhCCChhHHHHHHHHHHhh---CC-CH--HH--HHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCH----HHHHH
Q 001167 992 EISNLYTTPNKLRWIFDLYCHK---KP-SL--VV--SLFALAFEMSRKGPPHRIRGLFERALANDTVRCSV----VLWRW 1059 (1134)
Q Consensus 992 ~lE~~~~~~~raR~il~~~~~~---~p-s~--~~--wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~----~LWr~ 1059 (1134)
.+....+..+.+...+.+++.. .+ .. .. +......-... |....|...|++|+......... ..+..
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556778899999999987755 33 22 11 21111222233 78999999999999631111111 12233
Q ss_pred HHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1060 YIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1060 YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
........ |+++.|...|.+|+..+.-.+..+
T Consensus 153 la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 153 LGDLAQQE-KNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHH
Confidence 33334443 899999999999998776444333
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=88.94 E-value=1.2 Score=39.50 Aligned_cols=54 Identities=11% Similarity=-0.015 Sum_probs=49.4
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEG 817 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~ 817 (1134)
..+...|.+.++..|+.+|++...|..+|.+....|+++.|...|++|+...|.
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 345678889999999999999999999999999999999999999999998873
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=88.89 E-value=0.53 Score=42.39 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=48.3
Q ss_pred CCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 765 CSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 765 ~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
.+...|.+.++.+|+.+|++...|...|.+....|+++.|...|++|+...+
T Consensus 21 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 21 DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4567899999999999999999999999999999999999999999998765
No 193
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.86 E-value=0.6 Score=41.21 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHhhhcCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001167 766 SVTPCQPLAKGLLKSDRQDVL-LCGVYARREAFFGNIDHARRVFDMALSSIEG 817 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~-LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~ 817 (1134)
+...|.+.++.+++.+|.+.. .|...|.+....|+++.|.+.|++|+...|.
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 457788999999999999999 9999999999999999999999999998873
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=88.80 E-value=1.6 Score=38.80 Aligned_cols=55 Identities=5% Similarity=-0.022 Sum_probs=48.3
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1031 KGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1031 ~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
.|....|...|++|+. ..+.++.+|..+....... |+++.|...|.+|+..+|.+
T Consensus 17 ~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 17 QGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSST
T ss_pred cCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCc
Confidence 3789999999999998 5677888898888877775 99999999999999999986
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.45 E-value=1.5 Score=38.46 Aligned_cols=58 Identities=17% Similarity=-0.031 Sum_probs=48.6
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHH-HHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVV-LWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~-LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~ 1092 (1134)
|....|...|++++. ..+.++. +|.......... |+++.|...|.+|+...|.+...|
T Consensus 14 ~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 14 GDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp TCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred CCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 788999999999998 4566777 887777766665 899999999999999999888766
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=88.44 E-value=2.5 Score=49.82 Aligned_cols=93 Identities=11% Similarity=-0.082 Sum_probs=73.7
Q ss_pred hCCChhHHHHHHHHHHhhCC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHH
Q 001167 996 LYTTPNKLRWIFDLYCHKKP-SLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAA 1074 (1134)
Q Consensus 996 ~~~~~~raR~il~~~~~~~p-s~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rA 1074 (1134)
..+..+.|...|++++..+| ....|......-... |....|...|++|+. ..+.++..|.......... |+++.|
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~-g~~~eA 93 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIE--LDKKYIKGYYRRAASNMAL-GKFRAA 93 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHH-TCHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc-CCHHHH
Confidence 45788999999999999888 456664333333334 789999999999998 4567888888777776765 999999
Q ss_pred HHHHHHHHHhCCCcHHHH
Q 001167 1075 RRIFFRAIHACPWSKRLW 1092 (1134)
Q Consensus 1075 R~Vf~RAL~~CPwsK~L~ 1092 (1134)
...|.+|+...|.....|
T Consensus 94 ~~~~~~al~~~p~~~~~~ 111 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAK 111 (477)
T ss_dssp HHHHHHHHHHSTTCTTHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999776544
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=88.33 E-value=0.81 Score=51.27 Aligned_cols=95 Identities=11% Similarity=-0.111 Sum_probs=63.1
Q ss_pred hhCCChhHHHHHHHHHHhhCCCHH------------------HHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHH
Q 001167 995 NLYTTPNKLRWIFDLYCHKKPSLV------------------VSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVL 1056 (1134)
Q Consensus 995 ~~~~~~~raR~il~~~~~~~ps~~------------------~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~L 1056 (1134)
...+.+..|...|.+++...|... .|+....+-+.. +....|...|++||. ..+.++..
T Consensus 190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~-g~~~~A~~~~~~al~--~~p~~~~a 266 (338)
T 2if4_A 190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL-KRYDEAIGHCNIVLT--EEEKNPKA 266 (338)
T ss_dssp CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT-TCCHHHHHHHHHHHH--HCTTCHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHH
Confidence 456677888888888877766432 443222222333 789999999999998 45677888
Q ss_pred HHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001167 1057 WRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWL 1093 (1134)
Q Consensus 1057 Wr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m 1093 (1134)
|.......... |+++.|...|.+|+...|.+..++.
T Consensus 267 ~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~ 302 (338)
T 2if4_A 267 LFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 87777776765 9999999999999999998876653
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.24 E-value=2.2 Score=38.58 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHH
Q 001167 947 EFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALA 1025 (1134)
Q Consensus 947 E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~ 1025 (1134)
..++..++..++..........++..|.++|..-|+|..-+..+.......+...++..++++++...|. .+|.-.|.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 4566677777766543223467888888999999998776666666666778888888888888888777 66765554
No 199
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.07 E-value=5.4 Score=47.41 Aligned_cols=141 Identities=11% Similarity=-0.024 Sum_probs=101.3
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHhh--CCCHHHHHHHHHHHHHcC---------CCchHHHHHHHHHhcCCCCCCCHH
Q 001167 987 FNTLVEISNLYTTPNKLRWIFDLYCHK--KPSLVVSLFALAFEMSRK---------GPPHRIRGLFERALANDTVRCSVV 1055 (1134)
Q Consensus 987 l~~~~~lE~~~~~~~raR~il~~~~~~--~ps~~~wlfaI~~E~~r~---------g~~~raRalFErAl~s~~~~~s~~ 1055 (1134)
+...+..-.+.|..++|..+|+..... .|++..|-..|..= .+. +...+|..+|+..+.. .+.-+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c-~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC-SLAEAATESSPNPGLSRGFDIFKQMIVD-KVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-TTCCCCSSSSCCHHHHHHHHHHHHHHHT-TCCCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HhCCchhhhhhcchHHHHHHHHHHHHHh-CCCCCHH
Confidence 444556667899999999999998776 56777775444321 111 2357899999988864 3455788
Q ss_pred HHHHHHHhHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHhhhccChHHHHHHHHHhhhcCcccccchHHhh
Q 001167 1056 LWRWYIAYEVYIASNPFAARRIFFRAIHA-CPWSKRLWLDGFLKLNSILTAKELSDLQEVMRDKELNLRTDIYEIL 1130 (1134)
Q Consensus 1056 LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~-CPwsK~L~m~a~~~l~~~~~~~EL~~l~dvM~EKeLRir~dleE~l 1130 (1134)
.|...|....+. |+++.|..+|.+.... |+=+...|-..+..+...=..++-.+|++-|.++|+..-+..+..|
T Consensus 107 tyn~lI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 107 TFTNGARLAVAK-DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999988885 9999999999987765 4334555655554444444578999999999999988766555444
No 200
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=87.23 E-value=3.8 Score=38.46 Aligned_cols=54 Identities=6% Similarity=-0.093 Sum_probs=49.4
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEG 817 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~ 817 (1134)
..+...|....+..|+.+|++...|...|.+....|+++.|...|++|+...|.
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 345778999999999999999999999999999999999999999999998773
No 201
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=86.82 E-value=5.9 Score=37.06 Aligned_cols=90 Identities=8% Similarity=-0.045 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 001167 964 LSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFER 1043 (1134)
Q Consensus 964 ~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFEr 1043 (1134)
+....+...+.++|...|.+...|......-...+.+ ..|...|++
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------------------------------~~A~~~~~~ 67 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF----------------------------------AECVQFCEK 67 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------------------------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH----------------------------------HHHHHHHHH
Confidence 4566666777777777777766554333333344444 444455555
Q ss_pred HhcCCC--CCCCHHHHHHHHH---hHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1044 ALANDT--VRCSVVLWRWYIA---YEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1044 Al~s~~--~~~s~~LWr~YI~---fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
||...+ ......+...|.+ ..... |+++.|...|.+||...|..
T Consensus 68 al~~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQ-NDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCCH
T ss_pred HHHhCcccchhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcCH
Confidence 543110 0111222223322 22233 78888888888888887753
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.74 E-value=1.2 Score=40.32 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=48.1
Q ss_pred CCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001167 767 VTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEG 817 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~ 817 (1134)
...|++..+..|+.+|+|..-+.-.|...+..|+++.|...|++++...|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 568999999999999999999999999999999999999999999998874
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=86.74 E-value=18 Score=43.60 Aligned_cols=171 Identities=7% Similarity=-0.047 Sum_probs=107.5
Q ss_pred CCCChHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhccCCchhccCChHHHHHHHHH
Q 001167 766 SVTPCQPLAKGLLKSDRQDVLLCGVYARREAFFGN----------IDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAE 835 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~Gn----------~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yae 835 (1134)
..++|-+....+|+.+|.+...|+-=+.+-...|+ ++.|-+.++.|+...| ....+|..-.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--------K~y~aW~hR~w 115 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--------KSYGTWHHRCW 115 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--------CCHHHHHHHHH
Confidence 35677888999999999999999988777777777 8999999999999887 34466666566
Q ss_pred HHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 001167 836 VELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALICSAALFE 915 (1134)
Q Consensus 836 mEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~~~~Alfe 915 (1134)
+....+. ..+.+|+... +.+++.. .. ...+|-...-++.
T Consensus 116 ~l~~l~~----~~~~~el~~~----------------------------~k~l~~d--------~~-N~~aW~~R~~~l~ 154 (567)
T 1dce_A 116 LLSRLPE----PNWARELELC----------------------------ARFLEAD--------ER-NFHCWDYRRFVAA 154 (567)
T ss_dssp HHHTCSS----CCHHHHHHHH----------------------------HHHHHHC--------TT-CHHHHHHHHHHHH
T ss_pred HHHHccc----ccHHHHHHHH----------------------------HHHHhhc--------cc-cccHHHHHHHHHH
Confidence 5554431 0133444332 2222110 01 1122222211222
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhCCCCH
Q 001167 916 ELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQ-----------LSLSTVWETTLHGLQIYPYSP 984 (1134)
Q Consensus 916 ~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~-----------~~l~~~R~~l~~aL~~fP~N~ 984 (1134)
.+...++++++.+++++.. .+.....|.++..++...... ..+..+.+.+.+||...|+|.
T Consensus 155 ~l~~~~~~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 155 QAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp HTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HcCCChHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 2222678888888877664 344566777777666543111 113567778889999999999
Q ss_pred HHHHHHHHHH
Q 001167 985 KLFNTLVEIS 994 (1134)
Q Consensus 985 ~ll~~~~~lE 994 (1134)
..|. |..+-
T Consensus 227 saW~-y~~~l 235 (567)
T 1dce_A 227 SAWF-YHRWL 235 (567)
T ss_dssp HHHH-HHHHH
T ss_pred cHHH-HHHHH
Confidence 9995 66654
No 204
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=85.97 E-value=11 Score=41.36 Aligned_cols=90 Identities=8% Similarity=-0.111 Sum_probs=65.1
Q ss_pred CCCCCChHHHHHHHhhhcCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhccCCchh-cc------------
Q 001167 764 GCSVTPCQPLAKGLLKSDRQDVLLCGVY-------ARREAFFGNIDHARRVFDMALSSIEGLPLV-LK------------ 823 (1134)
Q Consensus 764 ~~~~k~aRk~aK~LLk~~~~nl~LW~aY-------A~lE~~~Gn~e~ARkVf~tALs~~~~~~~~-~~------------ 823 (1134)
..+...|++.+..++..+|.....|+.. ...-...+....|...+.+++...|..-.. ..
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 3456778899999999999999999988 455555566777888888888865532110 11
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhc
Q 001167 824 SNAPLLYLWYAEVELSSNSGSDPDSSLRAIHVLSCL 859 (1134)
Q Consensus 824 ~~~~~lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l 859 (1134)
.+-..+++.|+-+....+. +..|..+|..+
T Consensus 99 ~~r~dl~LayA~~L~~~g~------y~eA~~~l~~~ 128 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGN------YADAMEALEAA 128 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTC------HHHHHHHHTSS
T ss_pred CCHhHHHHHHHHHHHHCCC------HHHHHHHHHHH
Confidence 1225789999999888764 77888888554
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=84.03 E-value=67 Score=36.95 Aligned_cols=182 Identities=9% Similarity=-0.058 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHH--KQLSLSTVWETTLHGLQIYPYSPKLFNTLVEI-S-- 994 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~--~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~l-E-- 994 (1134)
+.+.|+..|+++...-. .....+...+.+ +..+ ...+..++...+.++. |.++.-+..+..+ .
T Consensus 194 ~~~~A~~~~~~aa~~g~--------~~a~~~~~Lg~~-y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGT--------VTAQRVDSVARV-LGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHHHHHHHHHHHHTTC--------SCHHHHHHHHHH-HTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCC--------HHHHHHHHHHHH-HhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC
Confidence 68899999999887532 222222233333 3333 2246778889999988 8887666555554 3
Q ss_pred hhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcC--CCchHHHHHHHHHhcCCCCCCCHHHHH-HHHHhHHHh--cC
Q 001167 995 NLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRK--GPPHRIRGLFERALANDTVRCSVVLWR-WYIAYEVYI--AS 1069 (1134)
Q Consensus 995 ~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~--g~~~raRalFErAl~s~~~~~s~~LWr-~YI~fE~~~--~~ 1069 (1134)
...+...++...|.++............+..++...+ .+..++...|++|+ +.++.-+. +-..++.-. ..
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCc
Confidence 3467889999999998866533322233443432211 38899999999998 22232222 222222110 13
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHhhhcc---ChHHHHHHHHHhhhcC
Q 001167 1070 NPFAARRIFFRAIHACPWSKRLWLDGFLKLNSIL---TAKELSDLQEVMRDKE 1119 (1134)
Q Consensus 1070 n~~rAR~Vf~RAL~~CPwsK~L~m~a~~~l~~~~---~~~EL~~l~dvM~EKe 1119 (1134)
++++|..+|.+|...- .....+..|..+....- ++.+=..++..-.+.|
T Consensus 337 d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 337 YPQKALDHLLTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 8999999999999853 34456777777654322 4445555555555555
No 206
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=83.12 E-value=18 Score=38.61 Aligned_cols=122 Identities=12% Similarity=0.016 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHhhCCChhHHHHHHHHHHhhCC---C----HHHH--HHHHHHH
Q 001167 963 QLSLSTVWETTLHGLQIYPYSPKLFN------TLVEISNLYTTPNKLRWIFDLYCHKKP---S----LVVS--LFALAFE 1027 (1134)
Q Consensus 963 ~~~l~~~R~~l~~aL~~fP~N~~ll~------~~~~lE~~~~~~~raR~il~~~~~~~p---s----~~~w--lfaI~~E 1027 (1134)
......+...+.+++...|.++..-. ....+....+..+.+...|.+++.... . ...+ +-.++.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~- 166 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA- 166 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-
Confidence 45788899999999999888876321 122233455678999999999987422 1 1122 222233
Q ss_pred HHcCCCchHHHHHHHHHhcC-----CCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCc
Q 001167 1028 MSRKGPPHRIRGLFERALAN-----DTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWS 1088 (1134)
Q Consensus 1028 ~~r~g~~~raRalFErAl~s-----~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPws 1088 (1134)
.. |....|...|++|+.. ...+....++..+....... |+++.|...|.+|+..|+..
T Consensus 167 -~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 167 -EN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp -HT-TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred -Hc-CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHc
Confidence 23 7899999999999941 01112233444555555554 99999999999999988643
No 207
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.81 E-value=8.5 Score=38.27 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCChHHHHHHHhhh--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 767 VTPCQPLAKGLLKS--DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~--~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
..+++.+.+-|..+ -.....+|.+||.+....|++..|..||..+++... -| ...|-..|.+++..
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A-~P------~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA-EP------REFLQQQYRLFQTR 148 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BS------HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cc------HHHHHHHHHHHHHH
Confidence 35689999988887 566789999999999999999999999999998754 12 34566667766554
No 208
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=82.09 E-value=1.5e+02 Score=39.66 Aligned_cols=44 Identities=11% Similarity=-0.100 Sum_probs=26.3
Q ss_pred CCchHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCC
Q 001167 1032 GPPHRIRGLFERALANDTVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACP 1086 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CP 1086 (1134)
|....|...|.+| .-|.......... |+++.|-+.+.+|...-+
T Consensus 1209 g~YeeA~~~Y~kA----------~ny~rLA~tLvkL-ge~q~AIEaarKA~n~~a 1252 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV----------SNFGRLASTLVHL-GEYQAAVDGARKANSTRT 1252 (1630)
T ss_pred CCHHHHHHHHHhh----------hHHHHHHHHHHHh-CCHHHHHHHHHHhCCHHH
Confidence 5566666666664 2455555555554 677777777777744433
No 209
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=80.73 E-value=12 Score=39.49 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=52.8
Q ss_pred CCChHHHHHHHhhh--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 767 VTPCQPLAKGLLKS--DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 767 ~k~aRk~aK~LLk~--~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
....+.+++.|..+ -.....+|.+||.+....|++..|..||..+++.... | ...|--.|.+++..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~-P------~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK-P------FLRFQQKYQQFTHR 197 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB-S------HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-c------HHHHHHHHHHHHHH
Confidence 36888999998887 5667899999999999999999999999999987641 2 34566667666554
No 210
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.61 E-value=10 Score=38.11 Aligned_cols=65 Identities=11% Similarity=-0.016 Sum_probs=52.5
Q ss_pred CChHHHHHHHhhh--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 768 TPCQPLAKGLLKS--DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 768 k~aRk~aK~LLk~--~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
.+++.+++.|..+ -.....+|.+||.+....|++..|..||..+++... -| ...|--.|.+++..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A-~P------~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA-EP------LERLQSQHRQFQAR 143 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BS------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-Cc------HHHHHHHHHHHHHH
Confidence 5688899888886 567789999999999999999999999999998763 12 34566677777664
No 211
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.41 E-value=38 Score=37.82 Aligned_cols=165 Identities=8% Similarity=-0.054 Sum_probs=96.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC------HHHH
Q 001167 914 FEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYS------PKLF 987 (1134)
Q Consensus 914 fe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N------~~ll 987 (1134)
.-.-.++++.|.+.|.+++....... ....+.+....... .+...+....+...+.+++..++.. ..++
T Consensus 64 ~y~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 64 LYVTMGAKDKLREFIPHSTEYMMQFA---KSKTVKVLKTLIEK--FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHTCHHHHHHHHHHTHHHHHTSC---HHHHHHHHHHHHHH--HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH--HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 33446889999999998887643210 01112222111122 2222345666777777777665433 2344
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHhhCC-----C--HHHHHHHHHHHHHcCCCchHHHHHHHHHhcCC-CCCCC----HH
Q 001167 988 NTLVEISNLYTTPNKLRWIFDLYCHKKP-----S--LVVSLFALAFEMSRKGPPHRIRGLFERALAND-TVRCS----VV 1055 (1134)
Q Consensus 988 ~~~~~lE~~~~~~~raR~il~~~~~~~p-----s--~~~wlfaI~~E~~r~g~~~raRalFErAl~s~-~~~~s----~~ 1055 (1134)
..++.+-...+....+..++.++..... . +..++.-+..-... ++..+|+.+|.+|+... ...+. ..
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL-RNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 4556666667889999999988764321 2 22333333333334 89999999999998632 12223 23
Q ss_pred HHHHHHHhHHHhcCCHHHHHHHHHHHHHhC
Q 001167 1056 LWRWYIAYEVYIASNPFAARRIFFRAIHAC 1085 (1134)
Q Consensus 1056 LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~C 1085 (1134)
++.+...+.... +++..|...|..++...
T Consensus 218 ~~~~~g~~~~~~-~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 218 LDLMSGILHCED-KDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHTTSS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHh
Confidence 444444444443 89999999999998753
No 212
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=76.47 E-value=46 Score=35.39 Aligned_cols=129 Identities=8% Similarity=-0.124 Sum_probs=77.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH---HhCCCCHH---
Q 001167 912 ALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGL---QIYPYSPK--- 985 (1134)
Q Consensus 912 Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL---~~fP~N~~--- 985 (1134)
+.+....++++.|+..|++++...... ......-.++...+.+.. ..+....+...+.+++ ...|.+..
T Consensus 122 ~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~---~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 122 AAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIANIYA---ENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 344444568999999999998754321 011111223333333332 2356788999999999 66787653
Q ss_pred -HHHHHHHHHhhCCChhHHHHHHHHHHhhCCC-------HHHHHHHHHHHHHcCCCchHH-HHHHHHHhc
Q 001167 986 -LFNTLVEISNLYTTPNKLRWIFDLYCHKKPS-------LVVSLFALAFEMSRKGPPHRI-RGLFERALA 1046 (1134)
Q Consensus 986 -ll~~~~~lE~~~~~~~raR~il~~~~~~~ps-------~~~wlfaI~~E~~r~g~~~ra-RalFErAl~ 1046 (1134)
.+..++..-...+..+.|..++++++...+. ...+......-... |....| ...|++|+.
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL-EYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHH
Confidence 3333444456788999999999998754321 23332222222233 677888 888999986
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=75.45 E-value=1.1e+02 Score=34.35 Aligned_cols=49 Identities=4% Similarity=-0.023 Sum_probs=42.8
Q ss_pred CChHHHHHHHhhhcCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcc
Q 001167 768 TPCQPLAKGLLKSDRQDVLLCGVYARREAFFG-NIDHARRVFDMALSSIE 816 (1134)
Q Consensus 768 k~aRk~aK~LLk~~~~nl~LW~aYA~lE~~~G-n~e~ARkVf~tALs~~~ 816 (1134)
..|-++...+|..||.+...|+-=..+-...| .++.|-+.++.+|...|
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP 120 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL 120 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 45677888899999999999999888887788 59999999999998887
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=75.21 E-value=17 Score=43.06 Aligned_cols=132 Identities=8% Similarity=-0.071 Sum_probs=77.1
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH---HhhCCChhHHHHHHHHHHhh--------CCCHHHHHHHHH-
Q 001167 963 QLSLSTVWETTLHGLQI-----YPYSPKLFNTLVEI---SNLYTTPNKLRWIFDLYCHK--------KPSLVVSLFALA- 1025 (1134)
Q Consensus 963 ~~~l~~~R~~l~~aL~~-----fP~N~~ll~~~~~l---E~~~~~~~raR~il~~~~~~--------~ps~~~wlfaI~- 1025 (1134)
++....+..+++++|.. -|+++.....+-.+ ....|.+++|..++++++.. +|.+...+.-+.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45677788888888764 37777666555443 45688999999999987643 222222221111
Q ss_pred HHHHcCCCchHHHHHHHHHhcCC---CCCCCHHHH---HHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001167 1026 FEMSRKGPPHRIRGLFERALAND---TVRCSVVLW---RWYIAYEVYIASNPFAARRIFFRAIHACPWSKRLWLDGF 1096 (1134)
Q Consensus 1026 ~E~~r~g~~~raRalFErAl~s~---~~~~s~~LW---r~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L~m~a~ 1096 (1134)
.-..+ |....|..+|++|+..- -++..+..= .+.-+....+ +.++.|-.+|++|..+--.+|.+||.+-
T Consensus 402 ~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~-~~~~~ae~~~~~~~~~~~~~~~~~~~~~ 476 (490)
T 3n71_A 402 TNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL-RMFRQNEFMYHKMREAALNNQPMQVMAE 476 (490)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCccccC
Confidence 11133 88999999999999621 133333332 2222233332 5578899999999887778888998765
No 215
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=75.03 E-value=24 Score=35.21 Aligned_cols=103 Identities=10% Similarity=-0.057 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccc----cCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh------
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERR----SCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI------ 979 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~----~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~------ 979 (1134)
..+...+-.+.++.|+..|++++...+.... .+.+....+|...+..+... +....+...+.++|..
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L---gr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL---RSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhhhcccc
Confidence 3344455568999999999999998654110 01111223566555554332 4566777778888888
Q ss_pred -CCCCHHHH----HHHHHHHhhCCChhHHHHHHHHHHhhCC
Q 001167 980 -YPYSPKLF----NTLVEISNLYTTPNKLRWIFDLYCHKKP 1015 (1134)
Q Consensus 980 -fP~N~~ll----~~~~~lE~~~~~~~raR~il~~~~~~~p 1015 (1134)
.|++...| ......-...+..+.+-..|++++...|
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99988877 4444444567777888888877765433
No 216
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.99 E-value=1.2e+02 Score=33.59 Aligned_cols=202 Identities=7% Similarity=-0.056 Sum_probs=108.2
Q ss_pred CCCChHHHHHHHhhhcCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHH
Q 001167 766 SVTPCQPLAKGLLKSDRQDV-----------------LLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPL 828 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~nl-----------------~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~ 828 (1134)
+...|.+..+.+|+..|.+- ......+.+....|+++.|...|..++...+..+.. ..
T Consensus 19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~ 93 (434)
T 4b4t_Q 19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS-----KT 93 (434)
T ss_dssp CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH-----HH
T ss_pred CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch-----HH
Confidence 45667777777777655432 125567888889999999999999998877643211 00
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHhcCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHH
Q 001167 829 LYLWYAEVELSSNSGSDPDSSLRAIHVLSCLGSGSTYTPFKCQPSNVQVLRAHQGYMERIKAVRSAWLRGAVSDQSIALI 908 (1134)
Q Consensus 829 lwl~yaemEl~~~~~~~~e~~~rAi~iL~~l~~~~~~~~~~~~~s~~~ILkAr~~~~~~l~~~~s~l~~~~~~~~~v~l~ 908 (1134)
.-... ..+..+.. ......+|...|...+.... ..+... ....+.
T Consensus 94 ~~~~~--------------------~~l~~~~~-----------~~~~~~~a~~~~~~~~~~~~---~~~~~~-~~~~~~ 138 (434)
T 4b4t_Q 94 VKVLK--------------------TLIEKFEQ-----------VPDSLDDQIFVCEKSIEFAK---REKRVF-LKHSLS 138 (434)
T ss_dssp HHHHH--------------------HHHHHHCS-----------CCSCHHHHHHHHHHHHHHHH---HSSCCS-SHHHHH
T ss_pred HHHHH--------------------HHHHHHHh-----------CCCCHHHHHHHHHHHHHHHH---HhCccH-HHHHHH
Confidence 00000 01111100 01112233344444332210 001111 112233
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh---CCCCHH
Q 001167 909 CSAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI---YPYSPK 985 (1134)
Q Consensus 909 ~~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~---fP~N~~ 985 (1134)
...|.+.+-.+.+..|..++++++...... ......-.++...+++. ...++..+++..+.+++.. .|..+.
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVY---HKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 345566666789999999999988764321 11122223343444433 3346788899999888865 344443
Q ss_pred HH----HHHHHHHhhCCChhHHHHHHHHHHh
Q 001167 986 LF----NTLVEISNLYTTPNKLRWIFDLYCH 1012 (1134)
Q Consensus 986 ll----~~~~~lE~~~~~~~raR~il~~~~~ 1012 (1134)
+. .....+....+.+..+...|..+..
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2223333456788888888877654
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=71.71 E-value=45 Score=37.94 Aligned_cols=135 Identities=8% Similarity=-0.018 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhcc-CC---HHHHHHHHH--HHHHhCCCCHHHHHHHHHH
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQ-LS---LSTVWETTL--HGLQIYPYSPKLFNTLVEI 993 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~-~~---l~~~R~~l~--~aL~~fP~N~~ll~~~~~l 993 (1134)
++.+|+.+|++|++..+.- ....-.+...++ + .+... .+ +..++..+. .++..-|.++..+..+.-.
T Consensus 214 ~~~~A~~l~e~Al~lDP~~----a~A~A~la~a~~--~-~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~ 286 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEF----TYARAEKALVDI--V-RHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVS 286 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHH--H-HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH--H-HhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHH
Confidence 3678899999999875321 111222233332 2 22211 11 122332232 2335569998888665544
Q ss_pred HhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q 001167 994 SNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSRKGPPHRIRGLFERALANDTVRCSVVLWRWYIAY 1063 (1134)
Q Consensus 994 E~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r~g~~~raRalFErAl~s~~~~~s~~LWr~YI~f 1063 (1134)
....+..+.+...+++++..+|+...|+..-...... |....|...|++|+..++.. ...+|..-+-|
T Consensus 287 ~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~-G~~~eA~e~~~~AlrL~P~~-~t~~~~~~l~F 354 (372)
T 3ly7_A 287 ALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMK-GMNREAADAYLTAFNLRPGA-NTLYWIENGIF 354 (372)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCSH-HHHHHHHHSSS
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCc-ChHHHHhCcee
Confidence 4445889999999999999999877775443333334 89999999999999843332 24566554444
No 218
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=68.20 E-value=43 Score=33.40 Aligned_cols=49 Identities=16% Similarity=0.044 Sum_probs=42.8
Q ss_pred CCCChHHHHHHHhhhcCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001167 766 SVTPCQPLAKGLLKSDRQ-------DVL-----LCGVYARREAFFGNIDHARRVFDMALSS 814 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~~~~-------nl~-----LW~aYA~lE~~~Gn~e~ARkVf~tALs~ 814 (1134)
+...|-..+...|..+|+ +.. .|..-+..-...|+++.|...|++||..
T Consensus 26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456777888888888888 555 9999999999999999999999999998
No 219
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=67.50 E-value=82 Score=29.59 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCchHHHHHHHH
Q 001167 966 LSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSR--KGPPHRIRGLFER 1043 (1134)
Q Consensus 966 l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r--~g~~~raRalFEr 1043 (1134)
..++...+.++.+.-..... +..+-.......++...|.++............+..++... ..+..+|...|++
T Consensus 11 ~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 86 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 45677777888777644444 22333334456779999999887644333333444343221 2688999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHhHHH--hcCCHHHHHHHHHHHHHh
Q 001167 1044 ALANDTVRCSVVLWRWYIAYEVY--IASNPFAARRIFFRAIHA 1084 (1134)
Q Consensus 1044 Al~s~~~~~s~~LWr~YI~fE~~--~~~n~~rAR~Vf~RAL~~ 1084 (1134)
|... . +......+-..++.- ..++.++|..+|.+|...
T Consensus 87 Aa~~--g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 87 ACGL--N-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcC--C-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9983 2 122222222222221 026899999999999886
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=66.61 E-value=69 Score=28.56 Aligned_cols=75 Identities=8% Similarity=-0.034 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFN 988 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~ 988 (1134)
..+.+.|..+.+..|..-|+.|+....+.. ...+....++...+...+.. +.+..+...+.+++..-|++...+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQ---GDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 345667777899999999999998764331 12345677777776665543 5688899999999999999987654
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=54.65 E-value=39 Score=30.24 Aligned_cols=59 Identities=12% Similarity=-0.062 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHhcCC-----CCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 001167 1032 GPPHRIRGLFERALAND-----TVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKRL 1091 (1134)
Q Consensus 1032 g~~~raRalFErAl~s~-----~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~L 1091 (1134)
+...+|...|+.|+... .....+.++..+....... |+++.|...+.+|+..-|.+..+
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHH
Confidence 78999999999999731 2345677777766666665 99999999999999999998765
No 222
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.53 E-value=40 Score=34.98 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=51.8
Q ss_pred CChHHHHHHHhhh--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCchhccCChHHHHHHHHHHHHh
Q 001167 768 TPCQPLAKGLLKS--DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIEGLPLVLKSNAPLLYLWYAEVELS 839 (1134)
Q Consensus 768 k~aRk~aK~LLk~--~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~~~~~~~~~~~~~lwl~yaemEl~ 839 (1134)
.+++.+++.|..+ -.....+|.+||.+....|++..|..||...++... -| ...|--.|.+++..
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A-~P------~~rL~~~~~~F~~R 162 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC-RP------YNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BS------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cc------HHHHHHHHHHHHHH
Confidence 3788899888887 566789999999999999999999999999998764 12 34566667666554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=52.39 E-value=58 Score=32.22 Aligned_cols=56 Identities=9% Similarity=-0.028 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 001167 1033 PPHRIRGLFERALAND-TVRCSVVLWRWYIAYEVYIASNPFAARRIFFRAIHACPWSKR 1090 (1134)
Q Consensus 1033 ~~~raRalFErAl~s~-~~~~s~~LWr~YI~fE~~~~~n~~rAR~Vf~RAL~~CPwsK~ 1090 (1134)
...++..+|+..+..+ +..+-..|..+-+-+ .+ .+++++|+..|.++|+.=|.+..
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~-~k-l~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN-YR-LKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HH-TSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHH-HH-ccCHHHHHHHHHHHHhcCCCCHH
Confidence 3456777777777633 101122233333333 33 38899999999999999886643
No 224
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=52.21 E-value=1.7e+02 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001167 909 CSAALFEELTNGWTAGIEVLHQAFAMV 935 (1134)
Q Consensus 909 ~~~Alfe~Lt~~~~~A~~v~~~al~~~ 935 (1134)
...|.+.+-.+.++.|...|++|+...
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356666677789999999999999864
No 225
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=42.61 E-value=1.7e+02 Score=34.12 Aligned_cols=185 Identities=10% Similarity=-0.044 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001167 910 SAALFEELTNGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNT 989 (1134)
Q Consensus 910 ~~Alfe~Lt~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~ 989 (1134)
+.|.-.+..+.++.|.+.|.++.+ -..|.........+ +..+.+..... .|..+|.+ +..
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~~-------------~~~Wk~v~~aCv~~---~ef~lA~~~~l-~L~~~ad~---l~~ 212 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKANS-------------TRTWKEVCFACVDG---KEFRLAQMCGL-HIVVHADE---LEE 212 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTC-------------HHHHHHHHHHHHHT---TCHHHHHHTTT-TTTTCHHH---HHH
T ss_pred HHHHHHHHhccHHHHHHHHHHcCC-------------chhHHHHHHHHHHc---CcHHHHHHHHH-HHHhCHhh---HHH
Confidence 444555566789999999998722 12333222111111 23333322111 13333433 334
Q ss_pred HHHHHhhCCChhHHHHHHHHHHhhCC-CHHHH-HHHHHHHHHcCCCchHHHHHHHHHhcCCC---CCCCHHHHHHHHHhH
Q 001167 990 LVEISNLYTTPNKLRWIFDLYCHKKP-SLVVS-LFALAFEMSRKGPPHRIRGLFERALANDT---VRCSVVLWRWYIAYE 1064 (1134)
Q Consensus 990 ~~~lE~~~~~~~raR~il~~~~~~~p-s~~~w-lfaI~~E~~r~g~~~raRalFErAl~s~~---~~~s~~LWr~YI~fE 1064 (1134)
++.+-.+.|.++.+-.+|++++...+ ....| -++|-.=--+++..-..-.+|...++.++ ......+|.-++-+-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 55555667777888888887776554 34444 22332200011111222223333333211 012345788877766
Q ss_pred HHhcCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHH-hhhccChHHHHHHHHHhhh
Q 001167 1065 VYIASNPFAARRIFFRAIHA------------CPWSKRLWLDGFLK-LNSILTAKELSDLQEVMRD 1117 (1134)
Q Consensus 1065 ~~~~~n~~rAR~Vf~RAL~~------------CPwsK~L~m~a~~~-l~~~~~~~EL~~l~dvM~E 1117 (1134)
... +++++|-.++-..... .+-+-+||--|+.. |.. -|.-|.+++.++.-
T Consensus 293 ~~~-~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~ 355 (449)
T 1b89_A 293 DKY-EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSP 355 (449)
T ss_dssp HHT-TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGG
T ss_pred Hhh-chHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHh
Confidence 665 7888776544333322 34455666666652 422 37788888888854
No 226
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=40.24 E-value=2.5e+02 Score=30.36 Aligned_cols=117 Identities=9% Similarity=-0.031 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHhhCCC----HHHHHHHHHHHHHcCCCchHHH
Q 001167 963 QLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNLYTTPNKLRWIFDLYCHKKPS----LVVSLFALAFEMSRKGPPHRIR 1038 (1134)
Q Consensus 963 ~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~~~~raR~il~~~~~~~ps----~~~wlfaI~~E~~r~g~~~raR 1038 (1134)
..++..+...+...|+..|.|..+=..|+++-+-.|.|+||-.=+.....-+|. ...+.-+|..|+.|.
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~------- 82 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK------- 82 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH-------
Confidence 357888889999999999999998888999999899999999999988888884 235567788887652
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhHHH--hcCCHHHHHHHHHHHHHhCCC
Q 001167 1039 GLFERALANDTVRCSVVLWRWYIAYEVY--IASNPFAARRIFFRAIHACPW 1087 (1134)
Q Consensus 1039 alFErAl~s~~~~~s~~LWr~YI~fE~~--~~~n~~rAR~Vf~RAL~~CPw 1087 (1134)
.+|. +-..+.....+.=|...+.--.. ..|+.+.|..+-.+|+..-|-
T Consensus 83 ~vfa-G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 83 DFAQ-GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHTT-SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHc-CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 2222 11122233333346664432111 148999999999999888764
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=33.19 E-value=1.6e+02 Score=28.96 Aligned_cols=80 Identities=9% Similarity=-0.164 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhhCC---ChhHHHHHHHHHHhhC-C-C-H-HHHHHHHHHHHHcCCCchHHHH
Q 001167 967 STVWETTLHGLQIYPYSPKLFNTLVEISNLYT---TPNKLRWIFDLYCHKK-P-S-L-VVSLFALAFEMSRKGPPHRIRG 1039 (1134)
Q Consensus 967 ~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~~~---~~~raR~il~~~~~~~-p-s-~-~~wlfaI~~E~~r~g~~~raRa 1039 (1134)
..+|+.+.+.+..-|.+......|+..-.+.. ...+.-.+|+..+... | . . .++..++.+ -+.++..+||.
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~--~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN--YRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH--HHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH--HHccCHHHHHH
Confidence 46777777777766666555545665554545 4557778888887776 4 1 1 233445555 34488999999
Q ss_pred HHHHHhcCC
Q 001167 1040 LFERALAND 1048 (1134)
Q Consensus 1040 lFErAl~s~ 1048 (1134)
.|+++|..+
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999999843
No 228
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=27.86 E-value=3.1e+02 Score=31.55 Aligned_cols=90 Identities=4% Similarity=-0.057 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh----C-CCCHHHHHHHHHH
Q 001167 919 NGWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQI----Y-PYSPKLFNTLVEI 993 (1134)
Q Consensus 919 ~~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~----f-P~N~~ll~~~~~l 993 (1134)
+.++.|..+|++++...... ..+.+-.+...+..+-..+..++....+...++++|.. + |+++.....|..+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~---lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSV---FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTT---BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCc---cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35788889999888864211 11222222222222222222345666677777777653 3 4555544444333
Q ss_pred ---HhhCCChhHHHHHHHHHH
Q 001167 994 ---SNLYTTPNKLRWIFDLYC 1011 (1134)
Q Consensus 994 ---E~~~~~~~raR~il~~~~ 1011 (1134)
....|..+.|..+|++++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 235566666666666654
No 229
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=26.55 E-value=1.3e+02 Score=34.76 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=42.2
Q ss_pred CCCChHHHHHHHhhh--------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001167 766 SVTPCQPLAKGLLKS--------DRQDVLLCGVYARREAFFGNIDHARRVFDMALSSIE 816 (1134)
Q Consensus 766 ~~k~aRk~aK~LLk~--------~~~nl~LW~aYA~lE~~~Gn~e~ARkVf~tALs~~~ 816 (1134)
..+.|..+.++.|.. +|+-...++..|.+....|+++.|...|++|+.+..
T Consensus 355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 456677777777764 677778899999999999999999999999998753
No 230
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=20.01 E-value=5.1e+02 Score=23.78 Aligned_cols=110 Identities=8% Similarity=0.009 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHhhcCccccCCccHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh---
Q 001167 920 GWTAGIEVLHQAFAMVLPERRSCSHQLEFLFNFNVRMLQRHHKQLSLSTVWETTLHGLQIYPYSPKLFNTLVEISNL--- 996 (1134)
Q Consensus 920 ~~~~A~~v~~~al~~~~~~~~~~~~~~E~L~~~~a~ll~~~~~~~~l~~~R~~l~~aL~~fP~N~~ll~~~~~lE~~--- 996 (1134)
+++.|+..|+++.+.-.+ ... .-.++..+ .++.++...+.++... .++.-...+..+-..
T Consensus 10 d~~~A~~~~~~aa~~g~~-------~a~------lg~~y~~g--~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-------FGC------LSLVSNSQ--INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-------THH------HHHHTCTT--SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHcCCCH-------hhh------HHHHHHcC--CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC
Confidence 577888899988775211 111 12233332 4566688889998887 444333333333322
Q ss_pred -CCChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHhc
Q 001167 997 -YTTPNKLRWIFDLYCHKKPSLVVSLFALAFEMSR--KGPPHRIRGLFERALA 1046 (1134)
Q Consensus 997 -~~~~~raR~il~~~~~~~ps~~~wlfaI~~E~~r--~g~~~raRalFErAl~ 1046 (1134)
.+...++...|+++............+..++... ..+..+|...|++|..
T Consensus 73 ~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5678999999999987644333333444443322 2688999999999997
Done!