Query 001168
Match_columns 1134
No_of_seqs 891 out of 5166
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 14:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 3.1E-68 1.1E-72 647.0 76.2 565 341-1098 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 5E-66 1.7E-70 627.4 71.0 573 345-1100 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 8.1E-65 2.8E-69 616.8 72.3 565 314-1047 20-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 4.6E-64 1.6E-68 610.3 75.2 555 310-1045 14-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-63 5.4E-68 661.6 63.9 613 344-1100 613-1248(1249)
6 1pgu_A Actin interacting prote 100.0 5.1E-59 1.7E-63 571.2 67.3 556 345-1048 17-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 7E-59 2.4E-63 617.0 58.7 573 309-1047 612-1248(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 6.3E-57 2.2E-61 565.9 67.7 603 340-1058 11-793 (902)
9 1pgu_A Actin interacting prote 100.0 3.5E-56 1.2E-60 545.9 58.2 557 405-1101 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 8.9E-55 3E-59 546.4 56.7 594 404-1113 13-797 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1E-47 3.5E-52 487.1 58.1 479 339-1001 5-501 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-45 9.3E-50 464.9 50.8 464 404-1045 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 3.2E-44 1.1E-48 412.8 40.3 283 345-661 107-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 1.8E-39 6E-44 359.4 41.7 295 337-662 22-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 5.3E-39 1.8E-43 359.7 45.1 293 337-660 45-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 5.7E-39 2E-43 361.0 43.8 294 339-660 56-354 (354)
17 3ow8_A WD repeat-containing pr 100.0 1.4E-38 4.9E-43 352.1 41.7 294 487-954 22-320 (321)
18 3iz6_a 40S ribosomal protein R 100.0 4.2E-39 1.4E-43 366.5 36.3 306 333-664 52-376 (380)
19 2ynn_A Coatomer subunit beta'; 100.0 1.8E-38 6.2E-43 349.1 40.1 292 338-663 4-302 (304)
20 3frx_A Guanine nucleotide-bind 100.0 2.5E-38 8.6E-43 350.5 41.0 301 337-664 7-318 (319)
21 1vyh_C Platelet-activating fac 100.0 1.2E-38 4E-43 366.5 39.7 247 404-664 104-370 (410)
22 1got_B GT-beta; complex (GTP-b 100.0 6.6E-38 2.3E-42 350.8 42.2 248 404-664 51-302 (340)
23 4g56_B MGC81050 protein; prote 100.0 2.4E-38 8.3E-43 356.1 36.4 293 344-664 40-344 (357)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-37 3.6E-42 349.8 41.1 304 337-666 5-338 (345)
25 4gqb_B Methylosome protein 50; 100.0 3.7E-37 1.2E-41 343.1 41.1 297 345-664 29-332 (344)
26 4g56_B MGC81050 protein; prote 100.0 6.7E-38 2.3E-42 352.5 34.1 320 735-1103 16-345 (357)
27 1r5m_A SIR4-interacting protei 100.0 3.4E-37 1.2E-41 358.2 41.0 306 340-665 39-363 (425)
28 2ynn_A Coatomer subunit beta'; 100.0 6E-37 2E-41 337.0 40.0 248 404-664 9-260 (304)
29 2pbi_B Guanine nucleotide-bind 100.0 8E-37 2.7E-41 343.5 41.5 249 404-664 60-316 (354)
30 1r5m_A SIR4-interacting protei 100.0 9.1E-37 3.1E-41 354.7 43.0 341 431-954 26-424 (425)
31 4ery_A WD repeat-containing pr 100.0 3.1E-36 1.1E-40 333.5 44.4 292 338-662 14-311 (312)
32 1erj_A Transcriptional repress 100.0 1.5E-36 5E-41 347.3 41.1 310 338-664 56-390 (393)
33 3iz6_a 40S ribosomal protein R 100.0 1.6E-37 5.5E-42 353.4 32.3 294 404-802 62-374 (380)
34 2hes_X YDR267CP; beta-propelle 100.0 2.4E-36 8.2E-41 336.4 40.8 297 337-663 4-328 (330)
35 3frx_A Guanine nucleotide-bind 100.0 3.2E-36 1.1E-40 333.5 41.4 247 404-664 13-268 (319)
36 1k32_A Tricorn protease; prote 100.0 1.4E-35 4.6E-40 382.9 53.8 555 345-1103 13-639 (1045)
37 4gqb_B Methylosome protein 50; 100.0 3E-37 1E-41 343.8 32.8 293 771-1102 29-332 (344)
38 2pm9_A Protein WEB1, protein t 100.0 1.3E-37 4.5E-42 360.6 30.3 295 346-664 12-338 (416)
39 2xzm_R RACK1; ribosome, transl 100.0 3.4E-36 1.2E-40 337.5 40.8 301 337-664 11-341 (343)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-36 1.9E-40 335.7 40.0 207 445-662 7-224 (345)
41 4aow_A Guanine nucleotide-bind 100.0 9.5E-36 3.3E-40 334.5 41.9 306 334-665 25-339 (340)
42 4ery_A WD repeat-containing pr 100.0 1.5E-35 5.2E-40 328.0 41.8 250 404-664 19-269 (312)
43 1gxr_A ESG1, transducin-like e 100.0 6E-36 2E-40 335.6 38.0 286 345-664 8-297 (337)
44 1gxr_A ESG1, transducin-like e 100.0 6.5E-35 2.2E-39 327.1 45.1 319 312-661 9-335 (337)
45 2pm9_A Protein WEB1, protein t 100.0 5.9E-37 2E-41 355.1 26.4 330 453-956 12-415 (416)
46 3vl1_A 26S proteasome regulato 100.0 4.3E-36 1.5E-40 348.3 32.9 283 348-664 58-366 (420)
47 3vl1_A 26S proteasome regulato 100.0 8.7E-36 3E-40 345.7 34.1 345 409-955 57-419 (420)
48 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-36 8E-41 353.3 29.4 275 336-663 123-428 (524)
49 2hes_X YDR267CP; beta-propelle 100.0 1E-34 3.5E-39 323.2 40.3 306 576-1048 3-328 (330)
50 3gre_A Serine/threonine-protei 100.0 2.4E-36 8.3E-41 352.2 28.0 357 405-952 60-437 (437)
51 2xzm_R RACK1; ribosome, transl 100.0 1.7E-34 5.7E-39 323.8 41.4 247 403-664 16-286 (343)
52 1erj_A Transcriptional repress 100.0 3.9E-34 1.3E-38 327.1 43.0 303 495-955 62-389 (393)
53 3dm0_A Maltose-binding peripla 100.0 1.6E-34 5.4E-39 357.1 42.1 298 339-662 374-692 (694)
54 1k32_A Tricorn protease; prote 100.0 1E-33 3.5E-38 365.4 50.9 534 328-1050 34-639 (1045)
55 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-36 6.2E-41 354.3 22.7 224 407-664 132-387 (524)
56 3ei3_B DNA damage-binding prot 100.0 1.6E-34 5.5E-39 330.2 36.9 297 336-663 62-382 (383)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-33 6.1E-38 328.4 45.5 319 404-913 114-442 (445)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-33 5.3E-38 329.0 44.7 317 448-955 113-442 (445)
59 3gre_A Serine/threonine-protei 100.0 5.3E-34 1.8E-38 332.4 38.4 286 320-664 35-360 (437)
60 3zwl_B Eukaryotic translation 100.0 2.4E-33 8.2E-38 318.9 42.4 289 340-664 26-347 (369)
61 4aow_A Guanine nucleotide-bind 100.0 3.6E-33 1.2E-37 313.4 43.2 294 444-915 29-339 (340)
62 1sq9_A Antiviral protein SKI8; 100.0 6E-34 2E-38 327.5 37.0 300 339-664 8-396 (397)
63 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-33 9.6E-38 310.2 40.2 289 336-664 7-297 (313)
64 3v7d_B Cell division control p 100.0 1.5E-32 5.3E-37 322.8 46.5 282 340-664 114-422 (464)
65 3v7d_B Cell division control p 100.0 1E-32 3.5E-37 324.3 44.4 345 578-1045 112-460 (464)
66 3k26_A Polycomb protein EED; W 100.0 4.6E-34 1.6E-38 324.4 31.7 290 345-662 17-365 (366)
67 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-33 3.6E-38 322.3 34.5 294 345-670 7-368 (372)
68 3i2n_A WD repeat-containing pr 100.0 1.3E-33 4.4E-38 319.5 34.1 289 345-664 17-354 (357)
69 4e54_B DNA damage-binding prot 100.0 5E-34 1.7E-38 331.3 30.8 292 345-664 118-431 (435)
70 3ei3_B DNA damage-binding prot 100.0 3.3E-33 1.1E-37 319.3 36.9 315 571-1101 57-382 (383)
71 4h5i_A Guanine nucleotide-exch 100.0 2.2E-33 7.5E-38 316.5 32.6 300 346-664 14-344 (365)
72 1sq9_A Antiviral protein SKI8; 100.0 8E-33 2.7E-37 318.1 36.3 298 490-957 9-397 (397)
73 3zwl_B Eukaryotic translation 100.0 3.7E-32 1.3E-36 309.0 40.5 302 403-804 27-347 (369)
74 3dwl_C Actin-related protein 2 100.0 3.1E-34 1.1E-38 327.2 22.8 286 345-661 10-377 (377)
75 4aez_A CDC20, WD repeat-contai 100.0 2.7E-32 9.2E-37 313.3 37.2 287 348-667 95-384 (401)
76 4a11_B DNA excision repair pro 100.0 5E-33 1.7E-37 321.1 31.0 348 567-1101 23-405 (408)
77 2pm7_B Protein transport prote 100.0 2E-32 7E-37 299.7 34.2 251 404-662 5-284 (297)
78 3dm0_A Maltose-binding peripla 100.0 6.9E-32 2.3E-36 333.5 42.9 208 447-664 376-593 (694)
79 2j04_A TAU60, YPL007P, hypothe 100.0 7.5E-33 2.6E-37 311.9 29.2 314 346-792 15-350 (588)
80 3k26_A Polycomb protein EED; W 100.0 2.5E-32 8.4E-37 310.1 33.7 250 403-664 13-319 (366)
81 4e54_B DNA damage-binding prot 100.0 4.1E-33 1.4E-37 323.7 27.8 300 581-1051 113-433 (435)
82 4gga_A P55CDC, cell division c 100.0 1.3E-31 4.4E-36 309.7 39.9 282 348-664 107-396 (420)
83 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-33 4.7E-38 317.8 22.6 319 452-993 14-349 (588)
84 4h5i_A Guanine nucleotide-exch 100.0 4.1E-32 1.4E-36 306.1 33.3 294 453-956 14-344 (365)
85 2pm7_B Protein transport prote 100.0 8.7E-32 3E-36 294.6 34.8 246 345-618 8-284 (297)
86 4a11_B DNA excision repair pro 100.0 8.1E-32 2.8E-36 311.0 36.4 365 475-955 21-405 (408)
87 1k8k_C P40, ARP2/3 complex 41 100.0 2E-31 6.9E-36 303.4 38.9 247 404-663 4-274 (372)
88 3odt_A Protein DOA1; ubiquitin 100.0 5.3E-31 1.8E-35 291.8 40.7 288 487-959 8-300 (313)
89 3i2n_A WD repeat-containing pr 100.0 3E-32 1E-36 308.2 29.8 298 536-957 13-355 (357)
90 4ggc_A P55CDC, cell division c 100.0 1.4E-30 4.9E-35 289.1 41.0 283 348-664 27-316 (318)
91 3dw8_B Serine/threonine-protei 100.0 1.3E-31 4.6E-36 313.3 34.4 299 344-661 26-444 (447)
92 3dwl_C Actin-related protein 2 100.0 1.3E-32 4.6E-37 313.7 25.1 243 405-663 8-281 (377)
93 4aez_A CDC20, WD repeat-contai 100.0 9.5E-31 3.2E-35 300.4 35.9 283 773-1106 94-385 (401)
94 3bg1_A Protein SEC13 homolog; 100.0 8.5E-32 2.9E-36 297.5 25.4 250 403-662 8-292 (316)
95 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-30 3.7E-35 303.6 35.5 272 345-664 132-415 (435)
96 1yfq_A Cell cycle arrest prote 100.0 7.7E-31 2.6E-35 294.6 33.0 279 345-659 10-320 (342)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 4.1E-31 1.4E-35 303.8 31.1 297 347-664 35-343 (402)
98 4gga_A P55CDC, cell division c 100.0 8.7E-30 3E-34 294.3 40.5 292 764-1103 97-397 (420)
99 3bg1_A Protein SEC13 homolog; 100.0 3.4E-31 1.1E-35 292.8 26.7 247 838-1101 12-293 (316)
100 4ggc_A P55CDC, cell division c 100.0 1.3E-29 4.3E-34 281.4 39.0 282 544-956 28-316 (318)
101 3mmy_A MRNA export factor; mRN 100.0 2.1E-30 7.3E-35 294.3 33.1 293 333-661 25-344 (368)
102 3dw8_B Serine/threonine-protei 100.0 4.6E-30 1.6E-34 300.2 35.4 249 406-664 26-374 (447)
103 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-29 5.3E-34 284.8 33.7 253 403-664 6-338 (351)
104 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-29 9.3E-34 291.8 35.3 234 405-664 130-366 (435)
105 1yfq_A Cell cycle arrest prote 100.0 2.2E-29 7.4E-34 282.8 32.8 248 404-664 7-283 (342)
106 3jrp_A Fusion protein of prote 100.0 1.9E-29 6.6E-34 287.8 32.6 257 339-623 3-291 (379)
107 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-29 8.6E-34 283.1 33.1 261 344-627 9-345 (351)
108 3jrp_A Fusion protein of prote 100.0 1.4E-29 4.8E-34 288.9 31.0 253 404-664 7-288 (379)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-29 5.5E-34 290.6 31.0 248 409-664 35-300 (402)
110 3mmy_A MRNA export factor; mRN 100.0 4.9E-29 1.7E-33 283.0 33.2 298 482-955 24-346 (368)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-28 5.4E-33 286.6 36.6 299 347-663 5-391 (450)
112 2w18_A PALB2, fancn, partner a 100.0 4.4E-28 1.5E-32 256.1 35.4 293 456-953 42-355 (356)
113 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-28 5E-33 276.3 31.8 283 338-664 10-337 (355)
114 1l0q_A Surface layer protein; 100.0 5.7E-27 2E-31 268.5 44.3 328 469-991 4-364 (391)
115 3bws_A Protein LP49; two-domai 100.0 2.2E-27 7.7E-32 276.0 40.1 336 410-913 62-432 (433)
116 3bws_A Protein LP49; two-domai 100.0 2.1E-27 7.1E-32 276.3 39.3 305 327-662 101-431 (433)
117 2xyi_A Probable histone-bindin 100.0 4E-28 1.4E-32 281.0 32.8 266 339-620 121-411 (430)
118 1l0q_A Surface layer protein; 100.0 3.7E-27 1.3E-31 270.0 40.4 278 360-675 3-286 (391)
119 2xyi_A Probable histone-bindin 100.0 1E-27 3.6E-32 277.5 35.1 252 404-664 124-411 (430)
120 3jro_A Fusion protein of prote 100.0 5.1E-29 1.7E-33 308.9 24.7 249 345-621 8-287 (753)
121 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-27 9.7E-32 265.7 35.3 240 404-664 15-272 (355)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-27 1.1E-31 275.4 35.8 286 542-955 5-391 (450)
123 3jro_A Fusion protein of prote 100.0 4.8E-28 1.6E-32 300.2 27.1 254 403-664 4-286 (753)
124 3lrv_A PRE-mRNA-splicing facto 100.0 6.3E-28 2.2E-32 270.3 25.6 196 838-1048 124-333 (343)
125 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-27 5.5E-32 267.1 26.3 267 353-662 43-332 (343)
126 2w18_A PALB2, fancn, partner a 100.0 2.9E-26 1E-30 242.2 33.1 295 338-661 26-355 (356)
127 4gq1_A NUP37; propeller, trans 100.0 2E-27 6.9E-32 271.1 26.3 304 346-661 15-387 (393)
128 1nir_A Nitrite reductase; hemo 100.0 8.5E-26 2.9E-30 266.6 36.9 345 548-1058 144-524 (543)
129 4gq1_A NUP37; propeller, trans 100.0 1.1E-26 3.6E-31 265.1 28.1 267 540-955 88-389 (393)
130 1nir_A Nitrite reductase; hemo 99.9 2E-25 6.9E-30 263.5 38.2 323 461-959 145-518 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.9E-24 9.9E-29 246.2 30.2 284 347-664 63-388 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.7E-24 2.3E-28 243.2 30.6 306 453-937 62-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2E-23 6.9E-28 260.7 33.7 303 346-663 36-413 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 4.5E-23 1.5E-27 257.5 32.4 328 453-956 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-23 8.7E-28 259.1 26.0 288 348-664 18-394 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 9E-23 3.1E-27 254.1 30.0 385 543-1055 18-450 (723)
137 3u4y_A Uncharacterized protein 99.9 1.6E-21 5.5E-26 217.3 36.6 281 352-664 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 6.5E-22 2.2E-26 245.4 31.1 358 456-953 28-474 (706)
139 3vgz_A Uncharacterized protein 99.9 8.8E-21 3E-25 213.5 36.4 279 342-654 36-335 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 2.8E-21 9.6E-26 239.7 33.8 237 411-662 28-341 (706)
141 1ri6_A Putative isomerase YBHE 99.9 4.2E-21 1.4E-25 215.1 29.1 242 840-1101 37-308 (343)
142 1ri6_A Putative isomerase YBHE 99.9 4.9E-20 1.7E-24 206.4 35.2 275 358-662 4-307 (343)
143 3u4y_A Uncharacterized protein 99.9 2E-20 6.9E-25 208.4 31.3 284 779-1103 4-306 (331)
144 2ojh_A Uncharacterized protein 99.9 8.1E-21 2.8E-25 207.7 26.7 257 364-654 17-293 (297)
145 1pby_B Quinohemoprotein amine 99.9 5.9E-20 2E-24 205.2 32.4 301 512-924 2-321 (337)
146 2oit_A Nucleoporin 214KDA; NH2 99.9 2.8E-19 9.5E-24 205.1 34.2 314 773-1101 37-405 (434)
147 1pby_B Quinohemoprotein amine 99.9 9.1E-20 3.1E-24 203.6 28.9 275 361-672 3-318 (337)
148 3hfq_A Uncharacterized protein 99.9 1.5E-19 5.1E-24 202.7 29.3 244 840-1100 39-316 (347)
149 3o4h_A Acylamino-acid-releasin 99.9 5.3E-20 1.8E-24 222.2 27.3 272 347-662 22-314 (582)
150 3vgz_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 199.7 32.2 273 314-610 42-335 (353)
151 2ojh_A Uncharacterized protein 99.8 8.6E-20 3E-24 199.5 25.8 257 324-610 19-293 (297)
152 1z68_A Fibroblast activation p 99.8 6.7E-20 2.3E-24 227.7 25.3 277 351-662 20-390 (719)
153 3hfq_A Uncharacterized protein 99.8 1.7E-18 5.9E-23 194.0 31.8 274 325-624 16-324 (347)
154 1z68_A Fibroblast activation p 99.8 6.7E-20 2.3E-24 227.7 20.7 306 328-664 37-444 (719)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-18 6.8E-23 198.0 30.0 259 347-617 37-331 (434)
156 3pe7_A Oligogalacturonate lyas 99.8 3.8E-18 1.3E-22 194.7 32.2 301 334-661 17-380 (388)
157 4a5s_A Dipeptidyl peptidase 4 99.8 2.9E-18 1E-22 212.5 33.0 380 543-1055 18-456 (740)
158 4a5s_A Dipeptidyl peptidase 4 99.8 8.8E-18 3E-22 208.2 37.0 274 348-664 18-354 (740)
159 3o4h_A Acylamino-acid-releasin 99.8 4.6E-19 1.6E-23 214.0 23.9 237 407-661 20-274 (582)
160 3scy_A Hypothetical bacterial 99.8 2.5E-17 8.4E-22 185.7 36.4 302 551-957 11-341 (361)
161 1jmx_B Amine dehydrogenase; ox 99.8 1.4E-18 4.8E-23 195.1 25.5 241 845-1108 4-332 (349)
162 1jmx_B Amine dehydrogenase; ox 99.8 4.4E-18 1.5E-22 190.9 27.6 280 351-671 4-332 (349)
163 3scy_A Hypothetical bacterial 99.8 1.2E-16 4.3E-21 179.9 36.2 245 407-662 48-336 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-17 3.9E-22 188.4 27.0 251 840-1102 39-342 (365)
165 3pe7_A Oligogalacturonate lyas 99.8 1.3E-17 4.4E-22 190.3 25.3 254 404-664 26-330 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.9E-16 6.7E-21 178.2 30.6 247 408-664 39-342 (365)
167 3c5m_A Oligogalacturonate lyas 99.8 9.4E-17 3.2E-21 183.7 27.4 300 335-664 18-385 (396)
168 2oiz_A Aromatic amine dehydrog 99.8 6.5E-16 2.2E-20 172.8 32.7 303 519-937 29-360 (361)
169 2oiz_A Aromatic amine dehydrog 99.7 1.5E-15 5.3E-20 169.7 33.2 301 551-987 13-360 (361)
170 3c5m_A Oligogalacturonate lyas 99.7 2.4E-16 8.3E-21 180.2 25.4 321 526-1006 15-386 (396)
171 1q7f_A NHL, brain tumor CG1071 99.7 8E-15 2.7E-19 158.9 30.9 241 840-1102 29-281 (286)
172 1qks_A Cytochrome CD1 nitrite 99.7 1.5E-13 5.1E-18 161.1 40.2 189 468-664 168-374 (567)
173 4a2l_A BT_4663, two-component 99.7 1.2E-10 4.1E-15 145.4 68.9 587 346-1100 42-658 (795)
174 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-15 2.4E-19 162.5 27.2 251 840-1101 23-322 (329)
175 4a2l_A BT_4663, two-component 99.7 1.4E-10 4.9E-15 144.7 67.9 535 346-1047 87-658 (795)
176 2gop_A Trilobed protease; beta 99.7 1.6E-14 5.6E-19 161.6 28.8 263 347-662 15-330 (347)
177 3azo_A Aminopeptidase; POP fam 99.7 9.1E-15 3.1E-19 179.6 28.9 250 403-661 18-321 (662)
178 1qks_A Cytochrome CD1 nitrite 99.7 3.9E-13 1.3E-17 157.6 40.1 274 360-664 168-478 (567)
179 3fvz_A Peptidyl-glycine alpha- 99.7 3.4E-14 1.2E-18 157.0 29.5 245 347-619 24-322 (329)
180 3azo_A Aminopeptidase; POP fam 99.7 1.2E-14 4E-19 178.6 27.8 284 345-664 22-370 (662)
181 1q7f_A NHL, brain tumor CG1071 99.6 2.2E-13 7.5E-18 147.5 32.3 245 406-664 27-281 (286)
182 2xdw_A Prolyl endopeptidase; a 99.6 1.8E-13 6.2E-18 168.7 34.3 249 405-664 121-415 (710)
183 3v9f_A Two-component system se 99.6 2.9E-09 1E-13 132.5 72.1 591 346-1101 18-656 (781)
184 2dg1_A DRP35, lactonase; beta 99.6 1.7E-13 5.7E-18 152.3 30.2 271 347-654 6-301 (333)
185 2dg1_A DRP35, lactonase; beta 99.6 2.4E-13 8.3E-18 150.9 30.1 273 773-1091 6-300 (333)
186 2gop_A Trilobed protease; beta 99.6 3.1E-13 1.1E-17 151.1 29.3 220 842-1100 60-330 (347)
187 3no2_A Uncharacterized protein 99.6 2E-13 6.7E-18 145.6 25.7 252 851-1119 4-270 (276)
188 2xdw_A Prolyl endopeptidase; a 99.6 3.8E-13 1.3E-17 165.9 31.2 246 347-621 125-416 (710)
189 2bkl_A Prolyl endopeptidase; m 99.6 2E-13 6.9E-18 167.7 26.7 246 405-664 117-398 (695)
190 3dsm_A Uncharacterized protein 99.6 4.9E-13 1.7E-17 147.4 26.7 241 841-1107 44-307 (328)
191 2z2n_A Virginiamycin B lyase; 99.6 1.7E-11 5.7E-16 133.6 38.6 281 345-664 13-296 (299)
192 3dsm_A Uncharacterized protein 99.6 1.1E-12 3.9E-17 144.5 28.5 277 367-671 15-308 (328)
193 3e5z_A Putative gluconolactona 99.6 9E-13 3.1E-17 143.4 27.3 241 345-622 26-289 (296)
194 3e5z_A Putative gluconolactona 99.6 1.3E-12 4.5E-17 142.1 28.5 238 404-664 23-287 (296)
195 1rwi_B Serine/threonine-protei 99.5 1.4E-12 4.9E-17 139.7 27.2 238 842-1103 25-266 (270)
196 3v9f_A Two-component system se 99.5 6E-09 2.1E-13 129.7 63.9 536 347-1047 66-655 (781)
197 2z2n_A Virginiamycin B lyase; 99.5 3.3E-11 1.1E-15 131.2 38.4 280 771-1102 13-296 (299)
198 2bkl_A Prolyl endopeptidase; m 99.5 6.6E-13 2.3E-17 163.1 26.5 247 345-622 119-400 (695)
199 3no2_A Uncharacterized protein 99.5 2.7E-12 9.3E-17 136.8 27.8 243 361-639 7-272 (276)
200 3sjl_D Methylamine dehydrogena 99.5 7.2E-12 2.5E-16 136.8 29.8 303 547-985 38-384 (386)
201 2mad_H Methylamine dehydrogena 99.5 3.6E-11 1.2E-15 134.0 36.2 275 353-664 27-351 (373)
202 3sjl_D Methylamine dehydrogena 99.5 1.9E-12 6.4E-17 141.4 24.7 284 351-672 37-371 (386)
203 1yr2_A Prolyl oligopeptidase; 99.5 2.2E-12 7.4E-17 159.7 28.1 246 406-664 160-442 (741)
204 1rwi_B Serine/threonine-protei 99.5 4.8E-12 1.6E-16 135.6 26.9 240 348-621 25-266 (270)
205 2qc5_A Streptogramin B lactona 99.5 1.5E-10 5.2E-15 125.9 38.6 278 345-661 18-298 (300)
206 2mad_H Methylamine dehydrogena 99.5 2.5E-11 8.7E-16 135.3 32.6 238 845-1104 70-353 (373)
207 2qc5_A Streptogramin B lactona 99.4 4.5E-10 1.5E-14 122.2 37.0 277 771-1099 18-298 (300)
208 1yr2_A Prolyl oligopeptidase; 99.4 1.4E-11 4.8E-16 152.4 27.1 244 347-621 163-443 (741)
209 3c75_H MADH, methylamine dehyd 99.4 3.6E-11 1.2E-15 134.1 24.9 279 356-671 82-409 (426)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.7E-10 9.1E-15 125.0 28.4 244 407-663 16-299 (314)
211 3c75_H MADH, methylamine dehyd 99.3 7.9E-11 2.7E-15 131.3 24.1 240 845-1104 122-405 (426)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.9E-10 9.8E-15 124.7 28.5 247 346-619 17-299 (314)
213 3hrp_A Uncharacterized protein 99.3 2.7E-10 9.3E-15 129.0 28.1 251 840-1099 130-408 (409)
214 3hrp_A Uncharacterized protein 99.3 8.6E-10 2.9E-14 124.8 29.4 240 347-617 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.3 3.6E-10 1.2E-14 138.2 27.9 250 347-623 129-409 (693)
216 2qe8_A Uncharacterized protein 99.3 2.9E-10 1E-14 126.0 24.3 270 347-653 17-311 (343)
217 3g4e_A Regucalcin; six bladed 99.3 9E-10 3.1E-14 119.4 26.7 227 348-608 14-261 (297)
218 4a0p_A LRP6, LRP-6, low-densit 99.3 1.5E-05 5.2E-10 94.6 65.1 534 422-1056 8-557 (628)
219 3g4e_A Regucalcin; six bladed 99.2 4.9E-09 1.7E-13 113.5 30.7 230 407-653 11-262 (297)
220 3iuj_A Prolyl endopeptidase; h 99.2 4.5E-10 1.6E-14 137.3 24.3 244 406-664 126-406 (693)
221 1xip_A Nucleoporin NUP159; bet 99.2 2.5E-10 8.5E-15 125.4 19.2 183 348-560 39-232 (388)
222 1xip_A Nucleoporin NUP159; bet 99.2 9.6E-11 3.3E-15 128.7 15.9 174 840-1034 37-230 (388)
223 3dr2_A Exported gluconolactona 99.2 2.5E-09 8.7E-14 116.4 26.7 234 345-616 43-303 (305)
224 3s94_A LRP-6, low-density lipo 99.2 5.6E-06 1.9E-10 98.2 57.3 526 428-1050 16-553 (619)
225 1yiq_A Quinohemoprotein alcoho 99.2 3.5E-09 1.2E-13 128.2 29.8 381 469-941 72-534 (689)
226 2ghs_A AGR_C_1268P; regucalcin 99.2 5.9E-09 2E-13 114.5 28.3 223 348-607 50-290 (326)
227 2qe8_A Uncharacterized protein 99.2 2.3E-09 7.7E-14 118.9 24.9 267 542-949 17-315 (343)
228 1kb0_A Quinohemoprotein alcoho 99.2 5.9E-09 2E-13 125.9 29.5 190 469-664 79-347 (677)
229 1mda_H Methylamine dehydrogena 99.2 7.2E-10 2.5E-14 121.7 19.4 267 359-672 32-354 (368)
230 2ghs_A AGR_C_1268P; regucalcin 99.1 3.1E-08 1.1E-12 108.6 30.9 222 411-653 51-292 (326)
231 1yiq_A Quinohemoprotein alcoho 99.1 8.5E-09 2.9E-13 124.8 27.8 200 420-627 70-346 (689)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.1 9E-08 3.1E-12 107.7 34.3 148 469-628 55-216 (376)
233 1kb0_A Quinohemoprotein alcoho 99.1 2.7E-08 9.3E-13 120.1 31.4 352 553-991 77-536 (677)
234 3dr2_A Exported gluconolactona 99.1 1.6E-08 5.6E-13 109.9 26.8 234 406-657 42-301 (305)
235 1mda_H Methylamine dehydrogena 99.1 1.7E-09 6E-14 118.6 18.7 222 862-1104 47-349 (368)
236 2ece_A 462AA long hypothetical 99.1 2.8E-08 9.4E-13 108.8 26.2 238 782-1036 93-399 (462)
237 1fwx_A Nitrous oxide reductase 99.1 3.3E-09 1.1E-13 120.4 18.5 273 551-957 99-433 (595)
238 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.7E-07 5.9E-12 105.4 32.2 258 362-660 106-375 (376)
239 1fwx_A Nitrous oxide reductase 99.0 1.7E-08 5.9E-13 114.5 22.9 238 846-1103 90-433 (595)
240 3s94_A LRP-6, low-density lipo 99.0 4.8E-05 1.6E-09 90.2 53.0 207 345-580 38-247 (619)
241 2ece_A 462AA long hypothetical 99.0 1.4E-07 4.7E-12 103.3 27.8 237 355-607 90-399 (462)
242 3hxj_A Pyrrolo-quinoline quino 99.0 6.2E-09 2.1E-13 114.9 17.7 301 458-913 24-324 (330)
243 2hz6_A Endoplasmic reticulum t 99.0 6.8E-10 2.3E-14 124.0 8.7 190 419-628 8-201 (369)
244 3hxj_A Pyrrolo-quinoline quino 98.9 6E-08 2E-12 106.9 23.2 265 347-663 60-324 (330)
245 2hz6_A Endoplasmic reticulum t 98.9 9.2E-10 3.1E-14 122.9 4.5 258 357-662 8-278 (369)
246 1npe_A Nidogen, entactin; glyc 98.8 1.4E-05 4.9E-10 84.5 35.5 223 409-645 36-263 (267)
247 4a0p_A LRP6, LRP-6, low-densit 98.8 0.0011 3.6E-08 78.7 63.5 528 360-1002 8-547 (628)
248 3ei3_A DNA damage-binding prot 98.8 0.0019 6.7E-08 81.8 62.3 283 350-661 330-634 (1158)
249 1kv9_A Type II quinohemoprotei 98.8 1.8E-06 6E-11 104.2 28.8 136 512-655 67-252 (668)
250 2iwa_A Glutamine cyclotransfer 98.7 1.7E-06 5.7E-11 89.3 21.7 211 842-1103 22-239 (266)
251 2iwa_A Glutamine cyclotransfer 98.7 3.3E-06 1.1E-10 87.1 23.6 208 335-576 7-237 (266)
252 1npe_A Nidogen, entactin; glyc 98.7 3E-05 1E-09 82.0 31.9 241 421-671 2-245 (267)
253 2ad6_A Methanol dehydrogenase 98.7 4.9E-06 1.7E-10 98.1 28.2 110 512-629 63-195 (571)
254 3nol_A Glutamine cyclotransfer 98.6 3.9E-06 1.3E-10 85.1 21.4 202 841-1095 43-250 (262)
255 3ei3_A DNA damage-binding prot 98.6 0.0058 2E-07 77.5 64.6 175 861-1048 807-999 (1158)
256 1flg_A Protein (quinoprotein e 98.6 8.2E-05 2.8E-09 87.6 35.4 192 470-665 71-357 (582)
257 2ad6_A Methanol dehydrogenase 98.6 2.6E-05 8.7E-10 91.9 30.8 191 469-665 64-337 (571)
258 3nol_A Glutamine cyclotransfer 98.6 4.7E-06 1.6E-10 84.6 20.9 182 456-652 45-244 (262)
259 2xe4_A Oligopeptidase B; hydro 98.6 6.9E-06 2.4E-10 100.8 26.1 248 348-622 175-461 (751)
260 1w6s_A Methanol dehydrogenase 98.5 2.1E-05 7.3E-10 92.3 28.9 195 469-665 64-344 (599)
261 3ott_A Two-component system se 98.5 0.0059 2E-07 75.2 71.1 572 346-1100 21-625 (758)
262 2fp8_A Strictosidine synthase; 98.5 1.4E-05 4.6E-10 87.4 25.7 238 842-1103 20-315 (322)
263 3nok_A Glutaminyl cyclase; bet 98.5 4.7E-06 1.6E-10 84.4 19.6 200 840-1094 54-259 (268)
264 1kv9_A Type II quinohemoprotei 98.5 1.6E-05 5.4E-10 95.9 27.6 268 361-651 119-520 (668)
265 2fp8_A Strictosidine synthase; 98.5 2.3E-05 8E-10 85.5 26.4 249 774-1048 20-313 (322)
266 3ott_A Two-component system se 98.5 0.0079 2.7E-07 74.1 61.0 527 346-1047 62-625 (758)
267 1w6s_A Methanol dehydrogenase 98.5 3.1E-05 1.1E-09 91.0 27.9 275 351-648 110-531 (599)
268 3mbr_X Glutamine cyclotransfer 98.5 3E-05 1E-09 78.0 23.1 206 840-1098 20-232 (243)
269 2p4o_A Hypothetical protein; p 98.5 0.00012 4.2E-09 79.0 30.0 228 409-653 32-278 (306)
270 1k3i_A Galactose oxidase precu 98.4 2.1E-05 7.2E-10 95.2 26.0 279 350-652 189-530 (656)
271 3nok_A Glutaminyl cyclase; bet 98.4 2.5E-05 8.7E-10 79.1 21.9 182 409-607 55-253 (268)
272 2p4o_A Hypothetical protein; p 98.4 0.00011 3.8E-09 79.3 28.7 241 333-609 18-278 (306)
273 1flg_A Protein (quinoprotein e 98.4 6.3E-05 2.1E-09 88.6 28.4 170 477-649 291-545 (582)
274 3mbr_X Glutamine cyclotransfer 98.4 7.4E-05 2.5E-09 75.2 24.0 184 455-652 22-223 (243)
275 3v64_C Agrin; beta propeller, 98.3 0.00056 1.9E-08 75.0 30.5 239 841-1103 34-277 (349)
276 3v64_C Agrin; beta propeller, 98.3 0.0015 5E-08 71.7 33.8 248 347-627 34-283 (349)
277 1ijq_A LDL receptor, low-densi 98.3 0.00049 1.7E-08 74.4 29.6 208 840-1056 29-246 (316)
278 2xbg_A YCF48-like protein; pho 98.3 0.0033 1.1E-07 68.2 35.6 281 345-660 34-319 (327)
279 3v65_B Low-density lipoprotein 98.2 0.0011 3.7E-08 73.9 32.1 247 348-627 78-326 (386)
280 3qqz_A Putative uncharacterize 98.2 0.00022 7.5E-09 73.0 23.8 203 840-1047 26-252 (255)
281 4hw6_A Hypothetical protein, I 98.2 0.0002 6.9E-09 81.0 26.1 248 842-1100 140-432 (433)
282 3v65_B Low-density lipoprotein 98.2 0.00034 1.2E-08 78.0 27.3 206 840-1056 115-326 (386)
283 1k3i_A Galactose oxidase precu 98.2 0.00016 5.4E-09 87.5 26.3 128 860-993 368-529 (656)
284 1ijq_A LDL receptor, low-densi 98.2 0.0028 9.7E-08 68.3 33.6 231 423-664 4-239 (316)
285 2xbg_A YCF48-like protein; pho 98.2 0.0043 1.5E-07 67.3 35.0 194 841-1046 122-320 (327)
286 3tc9_A Hypothetical hydrolase; 98.2 0.00015 5.1E-09 82.1 23.8 247 842-1100 138-429 (430)
287 3qqz_A Putative uncharacterize 98.2 0.00075 2.6E-08 69.0 26.6 202 346-573 26-250 (255)
288 2xe4_A Oligopeptidase B; hydro 98.2 0.0002 6.7E-09 87.9 26.4 244 406-664 170-459 (751)
289 3p5b_L Low density lipoprotein 98.2 0.001 3.5E-08 74.5 30.0 208 840-1056 111-328 (400)
290 3p5b_L Low density lipoprotein 98.1 0.0059 2E-07 68.2 34.0 232 422-664 85-321 (400)
291 3tc9_A Hypothetical hydrolase; 98.1 0.00066 2.3E-08 76.8 25.4 246 774-1047 138-429 (430)
292 3kya_A Putative phosphatase; s 98.0 0.00099 3.4E-08 75.1 25.6 253 842-1103 140-477 (496)
293 4hw6_A Hypothetical protein, I 98.0 0.00046 1.6E-08 78.1 22.4 245 774-1047 140-432 (433)
294 3sov_A LRP-6, low-density lipo 97.9 0.015 5.1E-07 62.5 32.4 232 368-627 12-246 (318)
295 3kya_A Putative phosphatase; s 97.8 0.0042 1.4E-07 70.0 26.3 253 774-1054 140-481 (496)
296 3m0c_C LDL receptor, low-densi 97.8 0.0078 2.7E-07 72.9 30.1 208 840-1056 423-640 (791)
297 1n7d_A LDL receptor, low-densi 97.8 0.00014 4.8E-09 87.8 14.1 208 841-1057 406-623 (699)
298 3m0c_C LDL receptor, low-densi 97.8 0.024 8.2E-07 68.7 33.3 232 422-664 397-633 (791)
299 3sov_A LRP-6, low-density lipo 97.8 0.011 3.7E-07 63.6 27.3 208 348-584 36-246 (318)
300 3amr_A 3-phytase; beta-propell 97.7 0.0061 2.1E-07 64.6 23.8 186 469-662 42-262 (355)
301 2xzh_A Clathrin heavy chain 1; 97.6 0.082 2.8E-06 54.7 31.5 234 844-1103 70-334 (365)
302 2p9w_A MAL S 1 allergenic prot 97.6 0.0094 3.2E-07 62.6 22.9 202 842-1048 14-265 (334)
303 2xzh_A Clathrin heavy chain 1; 97.6 0.098 3.4E-06 54.2 33.2 259 566-957 48-334 (365)
304 2ism_A Putative oxidoreductase 97.5 0.033 1.1E-06 60.9 27.5 230 841-1089 31-333 (352)
305 3amr_A 3-phytase; beta-propell 97.4 0.031 1.1E-06 59.2 24.2 197 419-627 39-272 (355)
306 3a9g_A Putative uncharacterize 97.4 0.05 1.7E-06 59.3 26.9 231 841-1089 29-330 (354)
307 1bpo_A Protein (clathrin); cla 97.4 0.22 7.4E-06 53.9 31.7 234 844-1103 69-333 (494)
308 1bpo_A Protein (clathrin); cla 97.4 0.22 7.5E-06 53.8 33.8 259 566-957 47-333 (494)
309 1n7d_A LDL receptor, low-densi 97.4 0.0011 3.8E-08 79.9 14.5 227 428-664 384-615 (699)
310 2xtc_A F-box-like/WD repeat-co 97.3 0.00017 5.8E-09 57.9 4.3 36 1-36 1-36 (90)
311 2nxp_A Transcription initiatio 97.3 0.00057 1.9E-08 63.5 8.3 82 67-149 48-136 (156)
312 3sre_A PON1, serum paraoxonase 97.3 0.033 1.1E-06 60.0 23.2 209 409-627 50-308 (355)
313 2j4b_A TAF5, transcription ini 97.2 0.00029 1E-08 63.7 5.4 82 67-150 29-117 (138)
314 2p9w_A MAL S 1 allergenic prot 97.2 0.0049 1.7E-07 64.7 15.3 164 883-1048 14-215 (334)
315 2vpj_A Kelch-like protein 12; 97.1 0.044 1.5E-06 58.5 22.3 193 419-622 62-281 (301)
316 2vpj_A Kelch-like protein 12; 97.1 0.031 1E-06 59.7 20.7 232 419-664 14-279 (301)
317 2xn4_A Kelch-like protein 2; s 97.0 0.051 1.8E-06 57.9 21.9 231 420-664 16-277 (302)
318 3ii7_A Kelch-like protein 7; p 97.0 0.099 3.4E-06 55.8 24.1 234 359-624 12-277 (306)
319 3ii7_A Kelch-like protein 7; p 97.0 0.049 1.7E-06 58.2 21.6 230 421-664 13-273 (306)
320 2j49_A Transcription initiatio 97.0 0.00035 1.2E-08 63.8 3.4 99 67-180 31-136 (148)
321 2ism_A Putative oxidoreductase 97.0 0.06 2.1E-06 58.7 22.0 230 410-652 32-334 (352)
322 2g8s_A Glucose/sorbosone dehyd 97.0 0.072 2.5E-06 58.1 22.4 240 842-1100 19-351 (353)
323 3a9g_A Putative uncharacterize 96.9 0.3 1E-05 53.2 26.6 231 347-607 29-330 (354)
324 1cru_A Protein (soluble quinop 96.9 0.46 1.6E-05 53.6 28.4 104 841-944 27-163 (454)
325 2g8s_A Glucose/sorbosone dehyd 96.7 0.57 2E-05 50.9 26.7 236 410-650 19-340 (353)
326 4asc_A Kelch repeat and BTB do 96.6 0.12 4.2E-06 55.3 21.0 229 423-664 8-278 (315)
327 2xn4_A Kelch-like protein 2; s 96.6 0.099 3.4E-06 55.7 19.8 192 419-622 61-279 (302)
328 1zgk_A Kelch-like ECH-associat 96.5 0.14 4.9E-06 54.6 20.0 233 418-664 23-288 (308)
329 3pbp_A Nucleoporin NUP82; beta 96.5 0.065 2.2E-06 57.9 16.5 152 846-1000 26-208 (452)
330 1xi4_A Clathrin heavy chain; a 96.4 0.18 6.2E-06 63.0 21.9 203 844-1056 69-297 (1630)
331 1zgk_A Kelch-like ECH-associat 96.3 0.4 1.4E-05 51.0 22.5 231 847-1103 20-289 (308)
332 4asc_A Kelch repeat and BTB do 96.3 0.54 1.8E-05 50.2 23.2 220 860-1103 12-279 (315)
333 2woz_A Kelch repeat and BTB do 96.2 0.38 1.3E-05 51.5 21.8 230 422-664 18-288 (318)
334 3das_A Putative oxidoreductase 96.2 1.7 5.7E-05 46.5 30.7 100 842-943 203-326 (347)
335 3sbq_A Nitrous-oxide reductase 96.1 0.7 2.4E-05 51.6 22.5 246 850-1103 140-480 (638)
336 3sre_A PON1, serum paraoxonase 96.1 0.64 2.2E-05 50.0 21.9 188 455-651 51-285 (355)
337 3sbq_A Nitrous-oxide reductase 96.0 2.7 9.3E-05 47.0 26.8 113 842-957 324-480 (638)
338 3s25_A Hypothetical 7-bladed b 96.0 2 6.8E-05 45.1 25.1 175 845-1049 57-256 (302)
339 1xi4_A Clathrin heavy chain; a 96.0 0.77 2.6E-05 57.5 24.2 99 566-674 47-145 (1630)
340 1uuj_A Platelet-activating fac 95.8 0.0087 3E-07 47.7 4.2 55 5-59 10-66 (88)
341 1tl2_A L10, protein (tachylect 95.8 0.12 4.1E-06 50.4 12.9 144 842-997 42-203 (236)
342 3pbp_A Nucleoporin NUP82; beta 95.7 0.61 2.1E-05 50.5 19.3 134 520-659 40-208 (452)
343 2uvk_A YJHT; unknown function, 95.7 0.47 1.6E-05 51.8 19.6 231 851-1103 19-344 (357)
344 2woz_A Kelch repeat and BTB do 95.5 0.79 2.7E-05 48.9 20.5 200 414-625 51-293 (318)
345 1cru_A Protein (soluble quinop 95.3 0.57 1.9E-05 52.8 18.7 109 881-992 26-161 (454)
346 3das_A Putative oxidoreductase 95.2 4.2 0.00014 43.4 29.7 236 346-607 31-326 (347)
347 2uvk_A YJHT; unknown function, 95.0 0.96 3.3E-05 49.2 19.3 147 477-629 168-352 (357)
348 1tl2_A L10, protein (tachylect 94.9 0.062 2.1E-06 52.3 7.7 147 883-1039 42-201 (236)
349 2be1_A Serine/threonine-protei 94.6 0.95 3.2E-05 48.2 16.8 115 421-540 11-140 (339)
350 2be1_A Serine/threonine-protei 94.5 0.33 1.1E-05 51.7 13.0 200 895-1106 11-236 (339)
351 3s25_A Hypothetical 7-bladed b 94.4 6 0.0002 41.5 25.1 179 351-576 57-255 (302)
352 2wg3_C Hedgehog-interacting pr 92.8 15 0.00051 41.1 26.3 109 410-520 15-159 (463)
353 3b7f_A Glycosyl hydrolase, BNR 92.0 17 0.00057 39.8 27.3 260 840-1108 54-377 (394)
354 3qhy_B Beta-lactamase inhibito 91.7 10 0.00034 39.3 19.2 222 841-1101 24-246 (282)
355 2zwa_A Leucine carboxyl methyl 91.5 7.4 0.00025 46.5 20.4 196 463-664 396-636 (695)
356 4hvt_A Ritya.17583.B, post-pro 91.1 30 0.001 41.1 27.7 251 350-621 132-431 (711)
357 2zwa_A Leucine carboxyl methyl 90.8 6.6 0.00023 46.9 19.0 198 850-1052 396-639 (695)
358 2wg3_C Hedgehog-interacting pr 89.3 31 0.0011 38.5 28.6 29 590-618 15-44 (463)
359 4hvt_A Ritya.17583.B, post-pro 87.9 37 0.0013 40.4 22.1 244 412-662 132-429 (711)
360 3qhy_B Beta-lactamase inhibito 85.9 34 0.0012 35.2 21.8 222 348-619 25-246 (282)
361 3q6k_A 43.2 kDa salivary prote 84.0 50 0.0017 35.5 21.5 155 862-1048 124-306 (381)
362 3q6k_A 43.2 kDa salivary prote 82.3 58 0.002 35.0 21.1 167 478-650 124-341 (381)
363 4gq2_M Nucleoporin NUP120; bet 82.0 3.4 0.00012 51.3 9.8 82 1017-1103 235-319 (950)
364 3kci_A Probable E3 ubiquitin-p 75.0 97 0.0033 33.5 26.7 205 882-1101 105-345 (389)
365 3b7f_A Glycosyl hydrolase, BNR 73.7 1E+02 0.0036 33.2 30.6 236 408-657 54-366 (394)
366 3no0_A DNA gyrase subunit A; D 67.9 1.1E+02 0.0038 31.1 22.6 195 894-1100 35-245 (276)
367 3uc1_A DNA gyrase subunit A; D 66.1 1.3E+02 0.0046 31.4 26.1 157 840-1002 94-277 (327)
368 4gq2_M Nucleoporin NUP120; bet 62.7 67 0.0023 39.7 14.7 37 926-962 237-273 (950)
369 3no0_A DNA gyrase subunit A; D 62.2 1.4E+02 0.0048 30.3 20.5 114 840-956 67-197 (276)
370 3kci_A Probable E3 ubiquitin-p 59.1 2E+02 0.0067 31.0 26.8 195 842-1049 106-346 (389)
371 3f7f_A Nucleoporin NUP120; nuc 55.5 27 0.00092 40.8 8.5 37 1019-1057 223-259 (729)
372 4d9s_A UVB-resistance protein 54.4 2.4E+02 0.0081 30.5 32.1 203 883-1100 122-356 (406)
373 4fhn_B Nucleoporin NUP120; pro 54.2 3.7 0.00013 52.4 1.3 41 1019-1059 239-279 (1139)
374 1wp5_A Topoisomerase IV; broke 47.6 2.6E+02 0.009 29.1 25.7 241 850-1101 3-277 (323)
375 2wpv_A GET4, UPF0363 protein Y 46.3 76 0.0026 32.9 9.5 111 38-187 17-128 (312)
376 1wp5_A Topoisomerase IV; broke 42.4 3.1E+02 0.011 28.5 25.7 193 418-619 3-225 (323)
377 3zwu_A Alkaline phosphatase PH 41.2 80 0.0028 36.2 9.5 64 543-606 477-548 (592)
378 1zi0_A DNA gyrase subunit A; b 40.8 3.2E+02 0.011 28.1 28.0 192 418-618 1-225 (307)
379 1sqj_A OXG-RCBH, oligoxylogluc 39.6 5.6E+02 0.019 30.6 26.3 158 346-520 14-190 (789)
380 4a9v_A PHOX; hydrolase, beta-p 39.2 73 0.0025 36.1 8.5 61 975-1036 476-549 (592)
381 3f7f_A Nucleoporin NUP120; nuc 38.3 1E+02 0.0035 36.0 9.7 37 883-922 223-259 (729)
382 1suu_A DNA gyrase subunit A; t 37.1 3.7E+02 0.013 27.7 28.3 191 850-1049 6-232 (312)
383 3lpz_A GET4 (YOR164C homolog); 37.0 1.2E+02 0.0039 31.8 9.0 111 38-186 16-129 (336)
384 2d68_A FOP, FGFR1OP; alpha hel 34.8 33 0.0011 27.2 3.4 29 7-35 20-48 (82)
385 4fhn_B Nucleoporin NUP120; pro 34.1 1.2E+02 0.0042 38.3 10.7 37 883-920 239-275 (1139)
386 2k9m_A RNA polymerase sigma fa 33.7 48 0.0016 29.2 4.8 90 3-104 19-122 (130)
387 3mkr_A Coatomer subunit epsilo 33.4 1.3E+02 0.0044 30.8 9.1 85 5-100 64-156 (291)
388 4a9v_A PHOX; hydrolase, beta-p 33.4 1.7E+02 0.0058 33.2 10.2 64 543-606 477-548 (592)
389 4gco_A Protein STI-1; structur 32.3 1.7E+02 0.0057 25.1 8.4 98 15-119 23-125 (126)
390 2lni_A Stress-induced-phosphop 32.3 2.2E+02 0.0076 23.7 10.1 89 8-102 19-112 (133)
391 3mvd_K Regulator of chromosome 30.6 5.4E+02 0.019 27.7 26.6 69 882-955 127-207 (423)
392 1zi0_A DNA gyrase subunit A; b 29.2 4.8E+02 0.017 26.7 27.9 239 851-1101 2-277 (307)
393 3mkr_A Coatomer subunit epsilo 28.6 3.5E+02 0.012 27.4 11.5 14 86-99 113-126 (291)
394 1xks_A Nuclear pore complex pr 28.1 6.2E+02 0.021 27.6 15.7 67 735-801 47-125 (450)
395 3uc1_A DNA gyrase subunit A; D 27.9 5.3E+02 0.018 26.8 27.1 203 840-1048 41-279 (327)
396 4ga2_A E3 SUMO-protein ligase 27.5 3.2E+02 0.011 24.0 10.7 94 21-121 13-111 (150)
397 3zwu_A Alkaline phosphatase PH 27.4 1.4E+02 0.0048 34.2 8.5 59 591-650 478-548 (592)
398 4asv_A Small glutamine-rich te 26.7 36 0.0012 27.4 2.4 19 1-19 15-33 (92)
399 2ion_A PDCD4, programmed cell 26.7 1.1E+02 0.0038 27.7 6.1 20 81-100 16-35 (152)
400 2nsz_A Programmed cell death p 26.5 1.2E+02 0.004 26.6 6.1 23 81-103 14-36 (129)
401 3l6v_A GYRA, DNA gyrase subuni 26.0 6.1E+02 0.021 26.8 28.7 194 850-1050 5-267 (370)
402 2zux_A YESW protein; beta-prop 25.9 7.5E+02 0.026 27.9 26.4 186 456-662 328-531 (591)
403 3qou_A Protein YBBN; thioredox 25.6 2.4E+02 0.0083 28.5 9.6 101 14-121 126-231 (287)
404 1vk8_A Hypothetical protein TM 25.5 11 0.00036 31.8 -0.9 36 24-60 37-72 (106)
405 1oyi_A Double-stranded RNA-bin 24.0 47 0.0016 26.3 2.6 30 6-37 16-45 (82)
406 1sqj_A OXG-RCBH, oligoxylogluc 23.7 9.8E+02 0.034 28.4 25.9 149 408-560 14-188 (789)
407 1kdl_A YOPD protein; yersinia, 23.6 45 0.0015 19.3 1.7 14 5-18 4-17 (26)
408 3mez_A Mannose-specific lectin 22.6 2.8E+02 0.0096 23.3 7.6 55 928-1002 22-76 (111)
409 2zux_A YESW protein; beta-prop 20.7 9.4E+02 0.032 27.1 27.3 66 577-643 352-424 (591)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.1e-68 Score=647.03 Aligned_cols=565 Identities=21% Similarity=0.361 Sum_probs=484.8
Q ss_pred EEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC
Q 001168 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 341 ~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
..|. |.+.|+|++|||||+ +||+|+.|++|+|||. +++.+.+ +.+|.+.|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 3455 999999999999998 6889999999999995 5555543 6789999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001168 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
|++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+... .......+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG-QLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTC-CEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeeccccc-ceeeeccCCCCc
Confidence 9999999999999999975 44443 7889999999999999999 899999999999999654 455677889999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee
Q 001168 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
|.++.++++. ..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.
T Consensus 142 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCE
T ss_pred eeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcE
Confidence 9999998765 789999999999999865 3455566778889999999999999999974 788999995 5788
Q ss_pred EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001168 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
+..+.+|.. .|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|
T Consensus 214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 888998887 8999999999999999999999999996 46677777765 4579999999999999999999999999
Q ss_pred ECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccc
Q 001168 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1134)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1134)
+.... ....+
T Consensus 290 ~~~~~--~~~~~-------------------------------------------------------------------- 299 (577)
T 2ymu_A 290 NRNGQ--LLQTL-------------------------------------------------------------------- 299 (577)
T ss_dssp ETTSC--EEEEE--------------------------------------------------------------------
T ss_pred eCCCc--EEEEE--------------------------------------------------------------------
Confidence 96432 11111
Q ss_pred cccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcc
Q 001168 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819 (1134)
Q Consensus 740 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 819 (1134)
.+|...|.+++|+|+++.+++++.|+.+++|++....
T Consensus 300 -----------------------------~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-------------- 336 (577)
T 2ymu_A 300 -----------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-------------- 336 (577)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------------
T ss_pred -----------------------------ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------------
Confidence 1266788999999999999999999999999863211
Q ss_pred cccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEE
Q 001168 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898 (1134)
Q Consensus 820 ~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 898 (1134)
.. .+.+ | ...+.+++|+|+|+++++++ ||.|++||. +++.+..+.+|...|++++|+| ++++|+
T Consensus 337 --------~~--~~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~ 401 (577)
T 2ymu_A 337 --------LQ--TLTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIA 401 (577)
T ss_dssp --------EE--EECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred --------eE--EEeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEE
Confidence 11 1222 6 88999999999999999999 899999996 5788889999999999999999 899999
Q ss_pred EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCce
Q 001168 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 978 (1134)
Q Consensus 899 sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~ 978 (1134)
+++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + .+....+|. ..|.
T Consensus 402 ~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v~ 471 (577)
T 2ymu_A 402 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVR 471 (577)
T ss_dssp EEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEE
T ss_pred EEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCEE
Confidence 9999999999995 6788889999999999999999999999999999999999754 3 233344555 5799
Q ss_pred EEEEcCCCcEEEE-EECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCC
Q 001168 979 KVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 979 ~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
+++|+|||++|++ +.|+.|++||.+++.+..+ .+|...|++++|+|||++|++++.||.|++||. +++.+..+..
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~ 547 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 547 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE---eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC
Confidence 9999999999999 5689999999988777665 456899999999999999999999999999996 5777777654
Q ss_pred cccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001168 1058 SAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
| ...+.+++|+| ||++|+|++.||+|++||
T Consensus 548 h----------~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 H----------SSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp C----------SSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred C----------CCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 3 35677999999 789999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5e-66 Score=627.41 Aligned_cols=573 Identities=13% Similarity=0.147 Sum_probs=458.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.+.+.+++|||||+ +||+++ ++.|+||++.+++.... +.+|.+.|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 467889999999998 567776 67999999987765543 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeeeEEecCCCCCe
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
+|+.|++|+|||+.+++.. ....+.+|.++|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765433 2236778999999999999999 77777754 3677776 677778899999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001168 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++|+|++. ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999998652 37999999999999999888778889999999999999999999999985 888999999999998
Q ss_pred EEec-------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-CCCcceEEEccCCCEEEEEeC
Q 001168 581 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 581 ~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
..+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5666 899999999999999999999999999999999988865421 112344555 7889999999
Q ss_pred CCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCcc
Q 001168 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1134)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1134)
|+.+++|+..++ .....+
T Consensus 303 d~~i~~~~~~~~-~~~~~~------------------------------------------------------------- 320 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVR------------------------------------------------------------- 320 (611)
T ss_dssp TCCEEEEETTTT-EEEEEE-------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEE-------------------------------------------------------------
Confidence 999999998665 211111
Q ss_pred ccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCc
Q 001168 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 812 (1134)
.+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus 321 ------------------------------------~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 321 ------------------------------------YGHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp ------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred ------------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 12677899999999999999999999999998743
Q ss_pred ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEE---ecCCCCceEEEE
Q 001168 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFLA 888 (1134)
Q Consensus 813 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~ 888 (1134)
+........+ | ...|.+++|++++. +++++ |+.+++|++.++..... .........+++
T Consensus 356 -------------~~~~~~~~~~--h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 356 -------------GISNRVFPDV--H-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp -------------CCEEECSSCS--C-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred -------------CceeeecccC--C-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 2222211122 7 88999999998875 55555 99999999876532110 001234567899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001168 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 889 ~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
|+| ++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .
T Consensus 419 ~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~ 488 (611)
T 1nr0_A 419 VSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-I 488 (611)
T ss_dssp ECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-E
T ss_pred EeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-c
Confidence 999 78777766 567899998 445 55555 88899999999999999999999999999998754221 111 3
Q ss_pred CCCCCCcCceEEEEcCCCcEEEE-EECCeEEEEeCCC-ccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001168 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
+|. ..|.+++|+|||++|++ +.|++|++|++.. ..+.......+|...|.+++|||||++||+|+.|++|++||+
T Consensus 489 ~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 489 VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 344 57999999999999999 5789999999932 322221122348999999999999999999999999999999
Q ss_pred CCccee--eecCCcccccccccCC-CCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001168 1047 ETLRFR--CRIGPSAYIPTYAVSN-TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1047 ~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
.++... ..+. +| ...+.+++|+| +++ |++|+.||+|++|++.
T Consensus 566 ~~~~~~~~~~~~----------~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 566 NKPSDHPIIIKG----------AHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TCTTSCCEEETT----------SSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCcccccchhhc----------cCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 987532 2222 23 35677999999 666 9999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-65 Score=616.76 Aligned_cols=565 Identities=15% Similarity=0.170 Sum_probs=454.8
Q ss_pred CcceeEeeCCCCCCcccc------CccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccccc
Q 001168 314 QSDEVSFAGVAHTPNVYS------QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386 (1134)
Q Consensus 314 ~~~~v~~s~~g~~~~~~~------~~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~ 386 (1134)
.+.+++|+|||+.++... |+...++...++. |.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-- 96 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-- 96 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE--
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee--
Confidence 445577777776655432 3334456666675 999999999999998 789999999999999976543211
Q ss_pred ceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCC----CeEEEEEcCCCCcccceeEeecccCCeeEEEEe
Q 001168 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1134)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s 462 (1134)
..+.+|.+.|.+++|+|||++||+++.+ +.|++||. ++... .+.+|...|++++|+
T Consensus 97 ---------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 97 ---------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFK 156 (611)
T ss_dssp ---------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEEC
T ss_pred ---------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEEC
Confidence 1256799999999999999999998865 47778874 44443 678999999999999
Q ss_pred cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec----
Q 001168 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---- 538 (1134)
Q Consensus 463 ~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---- 538 (1134)
|++.. .|++|+.|++|++||..+++++..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 157 p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 157 PSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp SSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred CCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 99874 69999999999999999999999999999999999998854 899999999999999999888777663
Q ss_pred ---CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC--cceEEEEEeCCCCEEEEEeCCCeEE
Q 001168 539 ---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIK 613 (1134)
Q Consensus 539 ---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1134)
.|...|.+++|+|++++|++++. |++|++||+.+++.+.++..+.. .....+.| +++.+++++.|+.++
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFIN 307 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEE
T ss_pred cccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEE
Confidence 68889999999999999999985 88899999999999888865432 13445555 678899999999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCccc
Q 001168 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (1134)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1134)
+|+...++....+.+| ...|.+++|+|+|++|++++.|++|++||+.++. ....+
T Consensus 308 ~~~~~~~~~~~~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~---------------------- 362 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF---------------------- 362 (611)
T ss_dssp EEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS----------------------
T ss_pred EEeCCCCCcceEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec----------------------
Confidence 9999999888777766 4589999999999999999999999999998762 11100
Q ss_pred ccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCccccc
Q 001168 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (1134)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 773 (1134)
..+|..
T Consensus 363 --------------------------------------------------------------------------~~~h~~ 368 (611)
T 1nr0_A 363 --------------------------------------------------------------------------PDVHAT 368 (611)
T ss_dssp --------------------------------------------------------------------------SCSCSS
T ss_pred --------------------------------------------------------------------------ccCCcc
Confidence 012667
Q ss_pred ceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC
Q 001168 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~ 853 (1134)
.|.+++|++++ .+++++.|+.+++|+......... ...... . .....+++|+|||+
T Consensus 369 ~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~-----~-~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 369 MITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANK-----L-SSQPLGLAVSADGD 424 (611)
T ss_dssp CEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEE-----C-SSCEEEEEECTTSS
T ss_pred eEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeee-----c-CCCCcEEEEeCCCc
Confidence 88999999776 588999999999998753221100 000000 1 34567899999999
Q ss_pred EEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE--EEEecCcccceEEEE
Q 001168 854 YVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLA 931 (1134)
Q Consensus 854 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~--~~~l~~h~~~i~~l~ 931 (1134)
.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|...|++++
T Consensus 425 ~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~ 498 (611)
T 1nr0_A 425 IAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA 498 (611)
T ss_dssp CEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE
T ss_pred EEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE
Confidence 88888899999999 344 55555 788899999999 999999999999999999987654 334 67999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE-EECCeEEEEeCC-Ccccc
Q 001168 932 FSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECSR 1008 (1134)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~-~~~~~ 1008 (1134)
|||||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||++ +....
T Consensus 499 fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~ 572 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred ECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCccccc
Confidence 999999999999999999999987 442211 0122355 57999999999999999 569999999994 33221
Q ss_pred ccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001168 1009 SWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1009 ~~~~~~~h-~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
.....+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 573 -~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 573 -IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred -chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 1123567 78999999999999 9999999999999974
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.6e-64 Score=610.27 Aligned_cols=555 Identities=22% Similarity=0.372 Sum_probs=475.7
Q ss_pred cccCCcceeEeeCCCCCCccccCcc------ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccc
Q 001168 310 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1134)
Q Consensus 310 ~~~~~~~~v~~s~~g~~~~~~~~~~------~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~ 382 (1134)
.|.+.|.+++|+|||+.+++...|. .++++++++. |.+.|++++|||||+ +||+|+.|++|+|||.. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 3566899999999999887765443 4677888888 999999999999998 78899999999999964 4444
Q ss_pred ccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEe
Q 001168 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1134)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s 462 (1134)
.. +.+|...|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999977642 23567899999999999
Q ss_pred cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC
Q 001168 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (1134)
Q Consensus 463 ~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 542 (1134)
|++. .+++++.++.+++|+. ..........|...|.+++++|++ .++++++.|+.|++||. +.+....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeC-CCcEEEEEecCCC
Confidence 9999 7899999999999995 455566777899999999998755 89999999999999996 4566777888999
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001168 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.|.+++|+|+++++++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++||. +++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcE
Confidence 9999999999999999874 788999995 5778888888877 8999999999999999999999999997 4567
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCccc
Q 001168 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+..+..| ...|.+++|+|++++|++++.|+.|++||.... . ...+
T Consensus 296 ~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~------------------------------- 340 (577)
T 2ymu_A 296 LQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTL------------------------------- 340 (577)
T ss_dssp EEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEE-------------------------------
T ss_pred EEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEE-------------------------------
Confidence 7777765 458999999999999999999999999997543 1 1111
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEec
Q 001168 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 782 (1134)
.+|...+.+++|+|
T Consensus 341 ------------------------------------------------------------------~~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 341 ------------------------------------------------------------------TGHSSSVWGVAFSP 354 (577)
T ss_dssp ------------------------------------------------------------------CCCSSCEEEEEECT
T ss_pred ------------------------------------------------------------------eCCCCCEEEEEECC
Confidence 11567789999999
Q ss_pred CCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CC
Q 001168 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG 861 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg 861 (1134)
+|+.+++++.||.+++|+.. +..+.. +.+ | ...|++++|+|||++|++++ |+
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~-----------------------~~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRN-----------------------GQLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TSSEEEEEETTSEEEEEETT-----------------------CCEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEeCCCEEEEEcCC-----------------------CCEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999842 111111 222 7 88999999999999999998 89
Q ss_pred eEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEE
Q 001168 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s 941 (1134)
.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999996 5788889999999999999999 8999999999999999996 57788899999999999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE-EECCeEEEEeCCCccccccCCCCCCCCCe
Q 001168 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1020 (1134)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v 1020 (1134)
++.|++|++||.. ++ .+....+|. ..|++++|+|||++|++ +.|+.|++||.+++++..+ .+|.+.|
T Consensus 485 ~~~d~~i~iw~~~-~~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~v 552 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSV 552 (577)
T ss_dssp EETTSEEEEEETT-SC-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSCE
T ss_pred EeCCCEEEEEcCC-CC-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCCE
Confidence 9999999999964 44 334445665 57999999999999999 5689999999987776665 4679999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEe
Q 001168 1021 SSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 1021 ~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
++++|+|||++|++++.|++|++||
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-63 Score=661.58 Aligned_cols=613 Identities=13% Similarity=0.170 Sum_probs=503.9
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEE
Q 001168 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.|.+.|++++|||+|+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++|
T Consensus 613 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEE
Confidence 4999999999999998 789999999999999999887654 67899999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001168 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
|+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|.++
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999987665 77899999999999996555489999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-------------CCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------------PGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
+|+|++ .++++++.||+|++||+.+......+.. ....+.+++|+|+|+.+++++ ++.+.
T Consensus 750 ~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~ 822 (1249)
T 3sfz_A 750 RFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVL 822 (1249)
T ss_dssp EECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEE
T ss_pred EEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEE
Confidence 998855 8999999999999999998776554432 123688999999999999986 56799
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001168 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
+||..++..+..+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..|. ..|.+++|+|+|++++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEEEEE
Confidence 999999998888874444489999999999999999999999999999999999888664 489999999999999999
Q ss_pred eCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCC
Q 001168 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1134)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1134)
+.||.|++|++.+... ........ ....
T Consensus 901 s~dg~v~vw~~~~~~~-~~~~~~~~---------------------------------------------------~~~~ 928 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCK-NSAIVLKQ---------------------------------------------------EIDV 928 (1249)
T ss_dssp ETTSCEEEEEHHHHHS-CCSSSEEE---------------------------------------------------EEEE
T ss_pred eCCCeEEEEEccccce-eeeecccc---------------------------------------------------eeeE
Confidence 9999999999865411 10000000 0000
Q ss_pred ccccCcccccc-cccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCC
Q 001168 731 SRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1134)
Q Consensus 731 ~~~~~~~~~~~-~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 809 (1134)
.+.++...++. ...+.+.+++.... .... .+...+.+++++|+++++++++.+|.|++|++..
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~------ 992 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTG----QIDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN------ 992 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSC----CEEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT------
T ss_pred EEcCCCcEEEEecCCcceEEEecCcc----eEEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC------
Confidence 11111112222 22244555544321 1111 1346799999999999999999999999998643
Q ss_pred CCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEE
Q 001168 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1134)
Q Consensus 810 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 888 (1134)
+..... +.+ | ...|++++|+|||+++++++ ||.|++||+.+++.. .+..|...|.+++
T Consensus 993 ----------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 993 ----------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFR 1051 (1249)
T ss_dssp ----------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEE
T ss_pred ----------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEE
Confidence 222211 223 7 88999999999999999998 999999999998876 4567999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001168 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 889 ~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. +....
T Consensus 1052 ~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~ 1124 (1249)
T 3sfz_A 1052 LLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELK 1124 (1249)
T ss_dssp ECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCC
T ss_pred EcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeec
Confidence 999 65 467799999999999999999999999999999999999999999999999999999998774 34455
Q ss_pred CCCCCCcCceEEEEcCCCcEEEEE-ECCeEEEEeC-CCccccccC------CCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001168 969 GRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWS------PKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-~~~~~~~~~------~~~~h~~~v~~v~~s~dg~~l~~~~~dg~ 1040 (1134)
+|. ..|.+++|+|||++|+++ .|+.|++||+ +++.+..+. ...+|.+.|++++|||||++|++++ |.
T Consensus 1125 ~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~ 1199 (1249)
T 3sfz_A 1125 GHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY 1199 (1249)
T ss_dssp CCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS
T ss_pred cCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce
Confidence 565 579999999999999995 6899999999 555554431 1245789999999999999999885 89
Q ss_pred EEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001168 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
|++||+.+++.+..+..+ ...+.+++|+| |+.+|++++.||.|++|++.
T Consensus 1200 v~vwd~~~g~~~~~~~~~----------~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQTFYTN----------GTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEEBCSSSCBCCCCCCCS----------SCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred EEEEECCCCceeeeeecc----------CCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 999999999988776543 23445788999 78999999999999999975
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.1e-59 Score=571.20 Aligned_cols=556 Identities=10% Similarity=0.177 Sum_probs=472.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc----cccccccceeeccccccccccccccccCCcC-eEEEEECC-
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~i~~sp- 418 (1134)
|.+.|++++|||+|+ +|++++ ++.|.|||+.++ +.... +.+|... |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 678999999999998 566676 889999999987 44432 6789999 99999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCC-----cccceeEeecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCe
Q 001168 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (1134)
Q Consensus 419 -dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~ 488 (1134)
++++||+|+.||.|++||+.++. .......+.+|..+|.+++|+|+++ +|++++.+ +.|++|| +++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997541 1123346778999999999999999 78888877 6888888 677
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC---cEEEEEECCC-CCEEEEEeeCCC
Q 001168 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 564 (1134)
.+..+.+|...|.+++|+|++. ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999988652 3899999999999999999888888888888 9999999999 999999875
Q ss_pred CCCcEEEEeCCCCeeEEEe-c---CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCcceE
Q 001168 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 638 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 638 (1134)
++.|++||+.+++.+..+ . .|.. .|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 788999999999999998 5 6665 89999999 999999999999999999999999998876531 2356777
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCC
Q 001168 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1134)
.|+ ++.++++++.||.|++||+.++ +....+.+|...+..
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~-------------------------------------- 344 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA-------------------------------------- 344 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE--------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE--------------------------------------
Confidence 775 8999999999999999999887 566666666544321
Q ss_pred CcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEE
Q 001168 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (1134)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~v 798 (1134)
..+ ++ .++++.|+.|++|++. .+. ..|...|.+++| +++..+++++.|+.+++
T Consensus 345 -----------~~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 345 -----------LTV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp -----------EET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred -----------EEe-cC--cEEECCCCeEEEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 223 33 5666678999999987 122 348899999999 67888999999999999
Q ss_pred eecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEec
Q 001168 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 878 (1134)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~ 878 (1134)
|++...+. ...+.+++++|++.+++++.++.+.+|++.+++.+..+.
T Consensus 398 ~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 398 NGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 98753221 235788999999999999889999999999999988887
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeC-CCcEEEEEcCCceEE-EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001168 879 SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~-dg~i~iwd~~~~~~~-~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
|...+++++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+||+++|++++.|+.|++||+.++
T Consensus 445 -~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 445 -LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp -CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 88899999998 679999999 999999999988766 678899999999999999999999999999999999998
Q ss_pred ccccceeeecCCC-CCCCCcCceEEEEcC----------CCcEEEEE-ECCeEEEEeC-CC-ccccccCCCCCCCCCeEE
Q 001168 957 EKLKSRFIQAPAG-RQSPLVGETKVQFHN----------DQTHLLVV-HESQISVYDS-KL-ECSRSWSPKDALPAPISS 1022 (1134)
Q Consensus 957 ~~~~~~~~~~~~~-~~~~~~~v~~~~fsp----------dg~~l~~~-~d~~v~vwd~-~~-~~~~~~~~~~~h~~~v~~ 1022 (1134)
+. +....+ |. ..|++++|+| ++++|+++ .|+.|++||+ ++ ..+..+ .+|...|++
T Consensus 521 ~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~ 589 (615)
T 1pgu_A 521 EV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVNN 589 (615)
T ss_dssp EE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEEE
T ss_pred cc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh---hcCccceEE
Confidence 74 334444 54 5799999999 99999995 6899999999 43 444443 567899999
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCC
Q 001168 1023 AIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
++|+||++ |++++.||.|++|++.+
T Consensus 590 l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 590 LLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999 99999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7e-59 Score=617.00 Aligned_cols=573 Identities=16% Similarity=0.216 Sum_probs=477.3
Q ss_pred hcccCCcceeEeeCCCCCCccccCc-------cccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc
Q 001168 309 RIRTGQSDEVSFAGVAHTPNVYSQD-------DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE 380 (1134)
Q Consensus 309 ~~~~~~~~~v~~s~~g~~~~~~~~~-------~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~ 380 (1134)
..+.+.|.+++|+|+|+.+++...| ..+++.+.++. |.+.|++++|+|+|+ ++++|+.||.|+|||+.+++
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCc
Confidence 3456789999999999887766544 35777888887 999999999999998 78899999999999999988
Q ss_pred ccccccceeeccccccccccccccccCCcCeEEEEECC--CCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeE
Q 001168 381 RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND 458 (1134)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 458 (1134)
.+.. +.+|...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.+|...|++
T Consensus 691 ~~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~ 748 (1249)
T 3sfz_A 691 LVHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNH 748 (1249)
T ss_dssp EEEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEE
T ss_pred eEEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEE
Confidence 7654 568999999999999 56689999999999999999987655 77899999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC-------------CCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001168 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-------------h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
++|+|+++ ++++|+.|+.|++||+.+++....+.. +...+.+++|+|++ ..+++++ ++.+.+
T Consensus 749 ~~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~-~~~v~~ 823 (1249)
T 3sfz_A 749 CRFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--DKIIVAA-KNKVLL 823 (1249)
T ss_dssp EEECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS--SEEEEEE-TTEEEE
T ss_pred EEEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC--CEEEEEc-CCcEEE
Confidence 99999999 899999999999999999987766542 23468888897754 7888776 789999
Q ss_pred EEccCCCceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEE
Q 001168 526 WLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 526 wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
||+.+......+. .+...+.+++|+|+++++++++. ++.|++||+.++..+..+.+|.. .|.+++|+|++++++
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFL 898 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCceeeecCCCcc-ceEEEEECCCCCEEE
Confidence 9999988877655 77889999999999999999874 78899999999999999999887 899999999999999
Q ss_pred EEeCCCeEEEEECCCCee-----------------------------EEEEeCC------CCCCCcceEEEccCCCEEEE
Q 001168 605 AAGDEFQIKFWDMDNMNM-----------------------------LTTVDAD------GGLPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~-----------------------------~~~~~~~------~~~~~v~~~~~s~d~~~l~~ 649 (1134)
+++.||.|++|++.+... ....... .....+.+++|+|+++++++
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence 999999999999753210 0000000 01235788888888888888
Q ss_pred EeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCC
Q 001168 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1134)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1134)
|+.+|.|++|++.++ .....+
T Consensus 979 g~~~g~i~i~d~~~~-~~~~~~---------------------------------------------------------- 999 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNN-RVFSSG---------------------------------------------------------- 999 (1249)
T ss_dssp EETTSCCEEEETTTT-SCEEEC----------------------------------------------------------
T ss_pred EcCCCCEEEEEcCCC-ceeeec----------------------------------------------------------
Confidence 888888888888765 211111
Q ss_pred CccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCC
Q 001168 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 809 (1134)
.+|...|.+++|+|+|+++++++.||.|++|++..
T Consensus 1000 ---------------------------------------~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~------ 1034 (1249)
T 3sfz_A 1000 ---------------------------------------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT------ 1034 (1249)
T ss_dssp ---------------------------------------CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT------
T ss_pred ---------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC------
Confidence 12667789999999999999999999999998743
Q ss_pred CCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEE
Q 001168 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1134)
Q Consensus 810 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 889 (1134)
+.... ... | ...+.+++|+|++.+++.+.||.|++||+.+++....+.+|...|++++|
T Consensus 1035 ----------------~~~~~--~~~--~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 1093 (1249)
T 3sfz_A 1035 ----------------GDYVF--LQA--H-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093 (1249)
T ss_dssp ----------------TEEEC--CBC--C-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEE
T ss_pred ----------------CceEE--Eec--C-CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEE
Confidence 22221 122 6 88999999999887655555999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee----e
Q 001168 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI----Q 965 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~----~ 965 (1134)
+| ++++|++++.||+|++||+.+++++..+.+|.+.|++++|+||+++|++++.||+|++||+.+++....... .
T Consensus 1094 s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1172 (1249)
T 3sfz_A 1094 SS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172 (1249)
T ss_dssp CS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---
T ss_pred CC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccc
Confidence 99 899999999999999999999999999999999999999999999999999999999999999885443210 1
Q ss_pred cCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeC-CCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001168 966 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
...+|. ..|++++|+|||++|++++ +.|++||+ ++..+..+ .+|...|++++|+|||++|++++.||.|++|
T Consensus 1173 ~~~~~~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~---~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1173 GTATHG---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTF---YTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp ----CC---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCC---CCSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred cccccC---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeee---eccCCcccEEEECCCCCEEEEecCCcEEEEE
Confidence 112333 5799999999999999875 89999999 66655544 4458899999999999999999999999999
Q ss_pred eCC
Q 001168 1045 DAE 1047 (1134)
Q Consensus 1045 d~~ 1047 (1134)
++.
T Consensus 1246 ~l~ 1248 (1249)
T 3sfz_A 1246 QVL 1248 (1249)
T ss_dssp CCC
T ss_pred eec
Confidence 975
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-57 Score=565.87 Aligned_cols=603 Identities=10% Similarity=0.061 Sum_probs=439.2
Q ss_pred EEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC
Q 001168 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
...+.|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34456899999999999998 78999999999999988765443 124788999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee---------
Q 001168 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 490 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~--------- 490 (1134)
|++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.||.|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 443 778999999999999 8999999999999999988764
Q ss_pred --EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC------------------CCcEEEEEEC
Q 001168 491 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 550 (1134)
Q Consensus 491 --~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1134)
..+.+|.++|.+++|+|.. +..+++|+.|+.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 2346799999999999853 3689999999999 9999988877766654 4679999999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE--ec---Cc------------cCcceEEEEEe----CCC-CEEEEEeC
Q 001168 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFD----TTR-NRFLAAGD 608 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~----~~~-~~l~~~~~ 608 (1134)
|+|++|++++. |+.|++||+++++++.. +. .| +...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 78899999999987754 21 22 12369999996 443 45666766
Q ss_pred C-----CeEEEEECC------------------CCeeEEEEeCCCCCCCcceEEEcc----------CCCEEEEEeCCCc
Q 001168 609 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 655 (1134)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------d~~~l~~~~~dg~ 655 (1134)
+ ..+.+|++. +.+....+... +...|..+.+.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22334444321 123677777755 3457889999999
Q ss_pred EEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccC
Q 001168 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1134)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1134)
|++|++.++.........+... . .. .+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l----------------~--------------------------------~~----~~~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL----------------S--------------------------------WL----RPL 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG----------------T--------------------------------TB----TTB
T ss_pred EEEEECCCCCcccccccCCCcc----------------c--------------------------------cc----CCC
Confidence 9999997662222111111000 0 00 000
Q ss_pred cccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccc
Q 001168 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1134)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 815 (1134)
... ++..+...++|+......... ...+ .+|...+.+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~~-~~~s~~~~~~w~~~~~~~~~~--~~~l--~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~------ 472 (902)
T 2oaj_A 404 ATT-SMAASVPNKLWLGALSAAQNK--DYLL--KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN------ 472 (902)
T ss_dssp EEE-EEEEEEEHHHHHHHHHTTBCC--CCSC--CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT------
T ss_pred eeE-EEEEEcCHHHHHHHHhcccCC--CCcc--cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC------
Confidence 000 001112234454321100000 0112 34777888899999999999999999999999865421000
Q ss_pred cCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCC-----------------------
Q 001168 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----------------------- 871 (1134)
Q Consensus 816 ~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----------------------- 871 (1134)
.++... +.. ..+..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ---~~~~~~----l~~-~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 473 ---ASFEVN----LSR-TLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp ---BCEEEE----HHH-HTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred ---ceEEee----chh-hcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence 000000 000 001137 88999999999999999999 999999999865
Q ss_pred ----------------------eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE-----Eec-Cc
Q 001168 872 ----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-GH 923 (1134)
Q Consensus 872 ----------------------~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~-----~l~-~h 923 (1134)
+++..+.+|.+.|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 34778889999999999999 88 99999999999999998887654 233 89
Q ss_pred ccceEEEEEe-----cCC---CEEEEEcCCCcEEEEeC---CCcccccceeeecCCCCCCCCcCceEEE-Ec--------
Q 001168 924 QNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQSPLVGETKVQ-FH-------- 983 (1134)
Q Consensus 924 ~~~i~~l~~s-----~d~---~~l~s~~~D~~i~iWd~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~-fs-------- 983 (1134)
.+.|++|+|+ ||| ++|++++.|++|++||+ .+|+......-.....+. ..|..++ |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~~ 698 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK---GPIHKIDAFSKETKSSCL 698 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS---CCCCEEEEEETTTCCBCB
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCC---CceEEEEeEecCCCCccc
Confidence 9999999999 886 89999999999999999 676643221111111111 3455555 55
Q ss_pred --------------CCCcEEEEEECCeEEEEeC-CCccccccCCCCCCCCCeEEE---E------EccCCCEEEEEecCC
Q 001168 984 --------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 984 --------------pdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v---~------~s~dg~~l~~~~~dg 1039 (1134)
++|..|++ ++..|+||++ ++++.... ..|...+.++ . |++++..|++++.||
T Consensus 699 a~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~~~~k~~~k~---~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g 774 (902)
T 2oaj_A 699 ATIPKMQNLSKGLCIPGIVLIT-GFDDIRLITLGKSKSTHKG---FKYPLAATGLSYISTVEKNNDRKNLTVIITLEING 774 (902)
T ss_dssp CBHHHHHGGGGTCCCCEEEEEE-CSSEEEEECTTCCCEEEEE---CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTS
T ss_pred CCHHHHhccCCCCCCCeEEEEE-eccceEEEeCccccceeeE---cccceeeeEEEEEEeccccccccCceEEEEEeCCC
Confidence 55555544 4889999999 66666554 2234556665 5 789999999999999
Q ss_pred cEEEEeCCCcceeeecCCc
Q 001168 1040 AIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1040 ~I~vwd~~~~~~~~~~~~~ 1058 (1134)
.|++|++.+++.+.++...
T Consensus 775 ~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 775 HLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred cEEEEECcchHHHhhccCC
Confidence 9999999999999888754
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.5e-56 Score=545.94 Aligned_cols=557 Identities=10% Similarity=0.091 Sum_probs=457.2
Q ss_pred ccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC----CcccceeEeecccCC-eeEEEEec--CCCcEEEEEEcCCC
Q 001168 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGG-VNDIAFAH--PNKQLCIVTCGDDK 477 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~l~~s~--d~~~~~l~sg~~d~ 477 (1134)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 46889999999999999999998 889999999987 4444 78899999 99999999 999 899999999
Q ss_pred cEEEEECCCC--------eeeEEecCCCCCeEEEEeeccCCccEEEEEecC----CeEEEEEccCCCceeEecCCCCcEE
Q 001168 478 MIKVWDVVAG--------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 478 ~i~iwd~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1134)
.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.+ +.|++|| ..+....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999755 6777888999999999998765 899999988 6888887 5667778889999999
Q ss_pred EEEECCCCC-EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc--ceEEEEEeCC-CCEEEEEeCCCeEEEEECCCCe
Q 001168 546 MMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .|.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6777764 788999999999999999887542 6999999999 9999999999999999999999
Q ss_pred eEEEE-e---CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCC
Q 001168 622 MLTTV-D---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1134)
Q Consensus 622 ~~~~~-~---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1134)
.+..+ . .+ ...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+......
T Consensus 241 ~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~----------------- 299 (615)
T 1pgu_A 241 FLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGN----------------- 299 (615)
T ss_dssp EEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGG-----------------
T ss_pred EeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccC-----------------
Confidence 98888 3 44 4589999999 9999999999999999999887 444444433211000
Q ss_pred CCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCccc-ccccccccccccccCCCCCccceeEEecCCcccccceE
Q 001168 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1134)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~ 776 (1134)
. .....+ +++.. ++++.++.|++|++.... ... .+ .+|...|.
T Consensus 300 --------------------------~--~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~---~~~--~~--~~~~~~v~ 343 (615)
T 1pgu_A 300 --------------------------Q--QVGVVA-TGNGRIISLSLDGTLNFYELGHDE---VLK--TI--SGHNKGIT 343 (615)
T ss_dssp --------------------------C--EEEEEE-EETTEEEEEETTSCEEEEETTEEE---EEE--EE--CCCSSCEE
T ss_pred --------------------------c--eeEEEe-CCCCeEEEEECCCCEEEEECCCCc---EEE--EE--eCCCCCEE
Confidence 0 001111 24444 444556999999988521 111 22 24889999
Q ss_pred EEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE
Q 001168 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la 856 (1134)
+++| |+ +++++.||.|++|++. .+ . ..| ...|.+++| +++..++
T Consensus 344 ~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~----~-~~~-~~~v~~~~~-~~~~~l~ 387 (615)
T 1pgu_A 344 ALTV-NP---LISGSYDGRIMEWSSS-------------------------SM----H-QDH-SNLIVSLDN-SKAQEYS 387 (615)
T ss_dssp EEET-TT---TEEEETTSCEEETTTT-------------------------EE----E-CCC-CSCEEEEEC-CSTTCCE
T ss_pred EEEe-cC---cEEECCCCeEEEEEch-------------------------hh----c-Ccc-cCceEEEEE-CCCcEEE
Confidence 9999 88 9999999999999753 11 1 227 899999999 6677888
Q ss_pred EEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecC
Q 001168 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1134)
+++ |+.|++||+.+++.. ..+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~-------~~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 455 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFG-------SQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-- 455 (615)
T ss_dssp EEETTTEEEETTEEEEECS-------SCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--
T ss_pred EEeCCCCEEEEEcccCccc-------CCceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--
Confidence 887 999999998765432 2788999999 88888877 88999999999999888887 88999999999
Q ss_pred CCEEEEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE-ECCeEEEEeC-CCccccccCC
Q 001168 936 LNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSP 1012 (1134)
Q Consensus 936 ~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-~~~~~~~~~~ 1012 (1134)
+++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|+++ .|+.|++||+ +++.+..+..
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 889999999 9999999999865321 3444454 579999999999999995 6899999999 6655554322
Q ss_pred CCCCCCCeEEEEEcc----------CCCEEEEEecCCcEEEEeCCCc-ceeeecCCcccccccccCCCCccEEEeecCCC
Q 001168 1013 KDALPAPISSAIYSC----------DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1081 (1134)
Q Consensus 1013 ~~~h~~~v~~v~~s~----------dg~~l~~~~~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1081 (1134)
.|...|++++|+| |+++|++++.||.|++||+.++ +.+..+..| ...+.+++|+| +
T Consensus 529 --~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h----------~~~v~~l~~s~-~ 595 (615)
T 1pgu_A 529 --FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH----------KDGVNNLLWET-P 595 (615)
T ss_dssp --CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS----------TTCEEEEEEEE-T
T ss_pred --CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC----------ccceEEEEEcC-C
Confidence 2789999999999 9999999999999999999998 667666533 35677899999 6
Q ss_pred CCEEEEEeCCCcEEEEecCC
Q 001168 1082 PNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1082 ~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
++ |++++.||+|++|++..
T Consensus 596 ~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 596 ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TE-EEEEETTSCEEEEEEC-
T ss_pred CC-eEEecCCceEEEEeeec
Confidence 77 99999999999999874
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-55 Score=546.42 Aligned_cols=594 Identities=11% Similarity=0.086 Sum_probs=431.2
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
..+|.+.|++++|+|++++||+|+.||.|++|+..+.+... . ..|..+|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 34799999999999999999999999999999988754332 2 35788999999999 77 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce-----------eEecCCCCcEEEEEECCC
Q 001168 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 552 (1134)
+.+++++..+. |.+.|++++|+|++ .+|++|+.||+|++||+++.... ..+..|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999998865 89999999999999999876643 223567789999999996
Q ss_pred C-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc-----------------cCcceEEEEEeCCCCEEEEEeCCCeEEE
Q 001168 553 G-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 553 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1134)
+ ..+++++ .++.| +||+++++.+..+..+ +...|.+++|+|+|++|++++.||.|++
T Consensus 163 ~~~~l~~g~----~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISY----EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEEC----SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEe----CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 5677765 37889 9999999999888766 1237999999999999999999999999
Q ss_pred EECCCCeeEEEEeC-----CC-----------CCCCcceEEEc----cCC-CEEEEEeCC-----CcEEEEECCCchhhh
Q 001168 615 WDMDNMNMLTTVDA-----DG-----------GLPASPRLRFN----KEG-SLLAVTTSD-----NGIKILANSDGVRLL 668 (1134)
Q Consensus 615 wd~~~~~~~~~~~~-----~~-----------~~~~v~~~~~s----~d~-~~l~~~~~d-----g~i~iw~~~~~~~~~ 668 (1134)
||+.+++++..... +. +...|.+++|+ |++ .+|++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 99999988764221 21 23468999996 443 567777665 3788887421100 0
Q ss_pred hhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCccccccccccccc
Q 001168 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1134)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 748 (1134)
..++.+....
T Consensus 317 ----------------------------------------------------------------------~~~s~~~~~~ 326 (902)
T 2oaj_A 317 ----------------------------------------------------------------------SITSYEGMKN 326 (902)
T ss_dssp ----------------------------------------------------------------------GGCCHHHHHH
T ss_pred ----------------------------------------------------------------------cccchhhhhh
Confidence 0000111111
Q ss_pred ccccCCCCCccceeEEecCCcccccceEEEEEec----------CCcceeeeeccceEEEeecccccCCCC---------
Q 001168 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS--------- 809 (1134)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~g~~l~~~~~dg~v~vw~~~~~~~~~~--------- 809 (1134)
+|+.. ...+.+.+ .+...|.++.+.+ +...+++++.||.+++|++..+.....
T Consensus 327 ~~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 327 YYANP-----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHHSC-----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hhcCc-----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 11110 00111111 1345677777755 334688888999999999854321100
Q ss_pred CC--cc-----cccCcccccCC---CCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEE----
Q 001168 810 GK--AT-----ANVAPQLWQPP---SGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM---- 874 (1134)
Q Consensus 810 ~~--~~-----~~~~~~~w~~~---~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~---- 874 (1134)
+. .+ ......+|+.. .+.. ...+.+ | ...+.+++|+||+++||+|+ |++|++||+.++...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 00 00 00011233311 0111 112444 6 77788899999999999999 999999999876421
Q ss_pred E--Eec-----CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc---------------------------------
Q 001168 875 T--MFM-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--------------------------------- 914 (1134)
Q Consensus 875 ~--~~~-----~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~--------------------------------- 914 (1134)
. .+. +|...|.+++|+| ++++||+|+.||+|+|||+.++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 1 122 7889999999999 9999999999999999999876
Q ss_pred ------------eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC-CCCCCCcCceEEE
Q 001168 915 ------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 981 (1134)
Q Consensus 915 ------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 981 (1134)
+++..+.+|.+.|++|+||||| +||+|+.|++|++||++++..+....+.... +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 3467889999999999999999 9999999999999999886643211122332 565 5799999
Q ss_pred Ec-----CCC---cEEEE-EECCeEEEEeC----CCccccccCCCC--CCCCCeEEEE-Ec-------------------
Q 001168 982 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1026 (1134)
Q Consensus 982 fs-----pdg---~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~--~h~~~v~~v~-~s------------------- 1026 (1134)
|+ ||| ++|++ +.|++|++||+ ++++...+..+. .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 57899999998 455554443321 2357787777 66
Q ss_pred ---cCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEE---e------ecCCCCCEEEEEeCCCcE
Q 001168 1027 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVI---A------PHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1027 ---~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~d~~~l~s~~~Dg~v 1094 (1134)
+++.+|+++ +..|+||++.+++.++....+ .....++ . |++ ++..|++++.||+|
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~----------~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i 776 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKY----------PLAATGLSYISTVEKNNDRK-NLTVIITLEINGHL 776 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSS----------CEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEccc----------ceeeeEEEEEEecccccccc-CceEEEEEeCCCcE
Confidence 455555554 789999999999888766432 1222233 3 566 67899999999999
Q ss_pred EEEecCCCcc--ccCCCCCCC
Q 001168 1095 HVVEPSDAEL--KWGGTPSQD 1113 (1134)
Q Consensus 1095 ~vW~~~~~~~--~~~~~~~~~ 1113 (1134)
++|++.+.+. .+.++++.+
T Consensus 777 ~~~s~p~l~~~~~~~~~~~~~ 797 (902)
T 2oaj_A 777 RVFTIPDFKEQMSEHIPFPIA 797 (902)
T ss_dssp EEEETTTCCEEEEEECSSCCC
T ss_pred EEEECcchHHHhhccCCcccc
Confidence 9999998883 334444433
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-47 Score=487.14 Aligned_cols=479 Identities=15% Similarity=0.237 Sum_probs=384.2
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
..+.+. |.+.|++++|||+|+ ++|+|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 344555 899999999999998 788899999999999999876653 56799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCC
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h 496 (1134)
|++++||+|+.||.|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987655 7788999999999999999 8999999999999999987 677888999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-CcEEEEEECC--CCCEEEEEeeCCCCCCcEEEEe
Q 001168 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
...|.+++|+|. ++..+++++.||+|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999983 23799999999999999998888777666554 7899999999 9999999874 78899999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC--EEEEEe
Q 001168 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTT 651 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~ 651 (1134)
..+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. +++++
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~- 290 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASG- 290 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEEEE-
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEEEE-
Confidence 999999999998877 89999999999999999999999999999999999887664 4799999999987 45544
Q ss_pred CCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCc
Q 001168 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1134)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1134)
.++.+.+|++..+.
T Consensus 291 ~~~~~~~~~~~~~~------------------------------------------------------------------ 304 (814)
T 3mkq_A 291 FDNGFTVLSLGNDE------------------------------------------------------------------ 304 (814)
T ss_dssp ETTEEEEEECSCCS------------------------------------------------------------------
T ss_pred eCCCEEEEEcCCCC------------------------------------------------------------------
Confidence 56678888865431
Q ss_pred cccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceE-EEeecccccCCCCC
Q 001168 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSG 810 (1134)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v-~vw~~~~~~~~~~~ 810 (1134)
..+.++|+|+.+++++.+... .++...
T Consensus 305 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 332 (814)
T 3mkq_A 305 --------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAV-------- 332 (814)
T ss_dssp --------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEE--------
T ss_pred --------------------------------------------ceeEECCCCCEEEECcccccceeeeeee--------
Confidence 123345555555544433210 000000
Q ss_pred CcccccCcccccCCCCCccccccC-CCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEE
Q 001168 811 KATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1134)
Q Consensus 811 ~~~~~~~~~~w~~~~~~~~~~~~~-~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 889 (1134)
....|+...+........ ...| ...+.+++|+|||++++++++|.+.+|++....... .+.+.+++|
T Consensus 333 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~ 400 (814)
T 3mkq_A 333 ------IRGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVW 400 (814)
T ss_dssp ------CCSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEE
T ss_pred ------cccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEE
Confidence 001122222222211110 0114 677899999999999999999999999987654432 356889999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC---CEEEEEcCCCcEEEEeCCCcccccceeeec
Q 001168 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~ 966 (1134)
+| +++++|+++.+|.|++|+ .+.+|...+.+++|+||+ .+|++++.|++|++||+.+++. +..
T Consensus 401 sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~-----~~~ 466 (814)
T 3mkq_A 401 GP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL-----VRR 466 (814)
T ss_dssp CT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE-----EEE
T ss_pred eC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE-----EEE
Confidence 99 899999999999999995 345688889999999998 6889999999999999998874 333
Q ss_pred CCCCCCCCcCceEEEEcCCCcEEEEE------ECCeEEEEe
Q 001168 967 PAGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYD 1001 (1134)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~~l~~~------~d~~v~vwd 1001 (1134)
...+. ..++|+|||++|+++ .+..+.+|.
T Consensus 467 ~~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 467 IDVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp ESSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 33332 389999999999997 556666553
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-45 Score=464.86 Aligned_cols=464 Identities=16% Similarity=0.194 Sum_probs=382.5
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+|+|++||+|+.||.|++||+.+++.+. .+.+|..+|.+++|+|+++ +|++|+.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987655 7778999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECC-CCCEEEEEee
Q 001168 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1134)
+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+.+. .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998865 89999999999999999987 45567788999999999999 8889998874
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001168 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEE
Confidence 788999999999888888877755899999999 99999999999999999999999999988764 4799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCC
Q 001168 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1134)
|+|+++++++++.||.|++||..++ +....+.
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~----------------------------------------------- 267 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN----------------------------------------------- 267 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC-----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-----------------------------------------------
Confidence 9999999999999999999998776 2222111
Q ss_pred cccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcce-eeeeccceEEE
Q 001168 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKL 798 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~v~v 798 (1134)
.+...+.+++|+|+|..+ ++.+.++.+.+
T Consensus 268 --------------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 268 --------------------------------------------------VGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp --------------------------------------------------CSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred --------------------------------------------------cCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 144678999999999864 77777888888
Q ss_pred eecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CC---eEEE------EEc
Q 001168 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FNM 868 (1134)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg---~i~v------wd~ 868 (1134)
|++. .....++++|+|+.+++++ +. .+.. |++
T Consensus 298 ~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 298 LSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp EECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred EEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 8742 2234578899999999876 32 1222 223
Q ss_pred CCCeE----EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcC
Q 001168 869 MTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944 (1134)
Q Consensus 869 ~~~~~----~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~ 944 (1134)
..+.. ...+..+...+.+++|+| ++++|++++ ||.+.+|++...... +.+.+.+++|+||++++++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECT
T ss_pred ccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeC
Confidence 33222 234455677899999999 999999988 899999998755432 3467889999999999999999
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCC---cEEEE-EECCeEEEEeC-CCccccccCCCCCCCCC
Q 001168 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ---THLLV-VHESQISVYDS-KLECSRSWSPKDALPAP 1019 (1134)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg---~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~ 1019 (1134)
|++|++|+.-.+ +. ..+..++|+||| ++|++ +.++.|++||+ +++.+..+...
T Consensus 413 ~g~v~l~~~~~~-------------~~---~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------ 470 (814)
T 3mkq_A 413 TGQIKYYKNFKE-------------VT---SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN------ 470 (814)
T ss_dssp TCCEEEEETTEE-------------CT---TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC------
T ss_pred CCcEEEEECCCC-------------cc---ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecC------
Confidence 999999964322 11 346788899998 45555 78999999999 66666655332
Q ss_pred eEEEEEccCCCEEEEE------ecCCcEEEEe
Q 001168 1020 ISSAIYSCDGLLVYAG------FCDGAIGVFD 1045 (1134)
Q Consensus 1020 v~~v~~s~dg~~l~~~------~~dg~I~vwd 1045 (1134)
...++|||||++|+++ +.++.+.+|.
T Consensus 471 ~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 471 AKDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred CCEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 2399999999999999 6665555543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-44 Score=412.84 Aligned_cols=283 Identities=20% Similarity=0.363 Sum_probs=262.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|.++|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|.+.|.+++|+|+|++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 677999999999998 789999999999999999876653 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++..+.+|...|.++.
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999877655 6789999999999999999 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC--------------------CCEEEEEeeCCC
Q 001168 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 564 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~~ 564 (1134)
+++++ .+|++++.|++|++||+.+.+....+..|...|.+++|+|+ +.++++++.
T Consensus 242 ~~~~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 97754 89999999999999999999999999999999999999996 668888874
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001168 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
|+.|++||++++.++..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 88899999999999999999887 899999999999999999999999999999999999987754 79999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001168 645 SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1134)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=359.41 Aligned_cols=295 Identities=14% Similarity=0.209 Sum_probs=263.8
Q ss_pred ceEEEEec-CCCCeeEEEEecCCC---eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001168 337 KTVVRTLN-QGSNVMSMDFHPQQQ---TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~---~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
+...+.+. |.+.|++++|+|+++ .+|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 33445555 999999999998632 3789999999999999987653211 12578999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001168 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999987655 6778899999999999999 899999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001168 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
+..|...|.+++|+|++ .+|++++.|+.|++||+.+++....+..|...|.+++|+|++++|++++. |+.|++|
T Consensus 160 ~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 99999999999998855 89999999999999999999888899999999999999999999999974 7889999
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001168 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
|+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++++..+..|. ..|.+++|+|++++|++++.
T Consensus 234 d~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 234 DVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp ETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred ECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeC
Confidence 9999999999999887 89999999999999999999999999999999999988664 47999999999999999999
Q ss_pred CCcEEEEECC
Q 001168 653 DNGIKILANS 662 (1134)
Q Consensus 653 dg~i~iw~~~ 662 (1134)
||.|++||..
T Consensus 311 d~~i~vwd~p 320 (321)
T 3ow8_A 311 DQEIHIYDCP 320 (321)
T ss_dssp TCCEEEEECC
T ss_pred CCeEEEEeCC
Confidence 9999999963
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-39 Score=359.75 Aligned_cols=293 Identities=19% Similarity=0.311 Sum_probs=262.9
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001168 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.....++. |.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 34556666 999999999999998 789999999999999998876653 567999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCc-ccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001168 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
|+|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987643 233446789999999999999874 8899999999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001168 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+|.+.|.+++|+|++ .++++|+.|++|++||++++.....+..|...|.+++|+|+++++++++. |+.|++||+
T Consensus 182 ~h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 999999999998854 89999999999999999999999999999999999999999999999985 788999999
Q ss_pred CCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001168 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
++++.+..+.... ...|.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|. ..|.+++|+|+|.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCC
Confidence 9998887775432 2268999999999999999999999999999999999998774 489999999999999999999
Q ss_pred CcEEEEE
Q 001168 654 NGIKILA 660 (1134)
Q Consensus 654 g~i~iw~ 660 (1134)
+.|++||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.7e-39 Score=361.03 Aligned_cols=294 Identities=17% Similarity=0.273 Sum_probs=263.4
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
..+++. |.+.|++++|+|+++ +|++|+.||+|+|||..+++.... +..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEEC
Confidence 455565 999999999999998 789999999999999988776543 45688899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC---cccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTG---ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
|+|++||+|+.|+.+++|++.... .......+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 999999999999999999987542 1233446778999999999999999 89999999999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001168 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+|...|.+++++|..++.+|++|+.|++|++||+++++....+..|...|.+++|+|+++++++++. |++|++||+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~ 269 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDL 269 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 9999999999999877899999999999999999999999899999999999999999999999985 788999999
Q ss_pred CCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001168 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
++++.+..+..+. ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcCC
Confidence 9988877776543 2268899999999999999999999999999999998887664 589999999999999999999
Q ss_pred CcEEEEE
Q 001168 654 NGIKILA 660 (1134)
Q Consensus 654 g~i~iw~ 660 (1134)
++|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=352.13 Aligned_cols=294 Identities=15% Similarity=0.250 Sum_probs=259.6
Q ss_pred CeeeEEecCCCCCeEEEEeecc--CCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001168 487 GRKQYTFEGHEAPVYSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
+.....+.+|.+.|++++|+++ .++.+|++|+.|++|++||+..... ...+.+|...|.+++|++++..+++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 3344567799999999999875 3467999999999999999987654 3467889999999999999999999985
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001168 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
|+.|++||+.+++.+..+..+.. .+.+++|+|+++++++++.||.|++|++.+++....+..+. ..|.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECC
Confidence 88899999999999999988876 78899999999999999999999999999999988887664 3789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCccc
Q 001168 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
+|++|++++.||.|++||+.++ +.+..
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~-~~~~~---------------------------------------------------- 201 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATG-KLLHT---------------------------------------------------- 201 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTT-EEEEE----------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCC-cEEEE----------------------------------------------------
Confidence 9999999999999999998765 11000
Q ss_pred CccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecc
Q 001168 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~ 802 (1134)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCC
Q 001168 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1134)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 881 (1134)
+.+ | ...|.+++|+||+++|++++ |+.|++||+.+++....+.+|.
T Consensus 202 ------------------------------~~~--h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 202 ------------------------------LEG--H-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp ------------------------------ECC--C-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred ------------------------------Ecc--c-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 011 5 77789999999999999999 8999999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001168 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
..|.+++|+| ++++|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus 249 ~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 249 SWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999963
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-39 Score=366.50 Aligned_cols=306 Identities=17% Similarity=0.285 Sum_probs=265.3
Q ss_pred ccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCe
Q 001168 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1134)
Q Consensus 333 ~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 411 (1134)
+.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.... +..|...|
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v 111 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWV 111 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTC
T ss_pred ccceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCE
Confidence 344556777787 999999999999998 688999999999999998876653 56799999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCCc----ccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001168 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
.+++|+|+|++||+|+.|+.+++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.++
T Consensus 112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTC
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCC
Confidence 9999999999999999999999999975421 2223357799999999999998654 6999999999999999999
Q ss_pred eeeEEe-----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001168 488 RKQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 488 ~~~~~~-----~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+.+..+ .+|...|.++++++. ++.+|++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred cEEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 998877 679999999999764 348999999999999999984 4667788899999999999999999999985
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccC------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC--CCCCC
Q 001168 562 SKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLP 633 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~ 633 (1134)
|++|++||+++++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||+..++.+..+.. ..+..
T Consensus 270 ----D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 270 ----DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp ----SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred ----CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 88899999999999888876532 1488999999999999999999999999999988887732 23456
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|.+++|+|+|.+|++|+.|++|++|++...
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 8999999999999999999999999998765
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-38 Score=349.12 Aligned_cols=292 Identities=17% Similarity=0.306 Sum_probs=255.5
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001168 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+..+++. |.+.|++++|||+|+ +|++|+.||+|+|||+.++..+.. +..|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 3455666 899999999999998 788999999999999999876653 5679999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecC
Q 001168 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~ 495 (1134)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987665 7889999999999999999 8999999999999999887 55678899
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-CCCCcEEEEEECC--CCCEEEEEeeCCCCCCcEEEE
Q 001168 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 572 (1134)
|...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.++++++. |+.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999884 33799999999999999998877666554 4557899999987 7789999885 8889999
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC--EEEEE
Q 001168 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 650 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~ 650 (1134)
|+++++++.++.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..+. ..+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEe
Confidence 9999999999999987 89999999999999999999999999999999999998653 4789999999875 57777
Q ss_pred eCCCcEEEEECCC
Q 001168 651 TSDNGIKILANSD 663 (1134)
Q Consensus 651 ~~dg~i~iw~~~~ 663 (1134)
+.+ .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 655 567787754
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.5e-38 Score=350.50 Aligned_cols=301 Identities=20% Similarity=0.268 Sum_probs=259.2
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001168 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
..+..++. |.+.|++++|+|++..+|++|+.||+|++|++.+...... .+...+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34556666 9999999999998755899999999999999875432211 01123678999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001168 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+. ++++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987655 7889999999999999999 89999999999999985 667788999
Q ss_pred CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001168 496 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 496 h~~~v~~i~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
|...|.++++.|.. ++..+++++.|++|++||+...+....+.+|...|.+++|+|++++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998753 3458999999999999999998888889999999999999999999999985 888999
Q ss_pred EeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC------CCCCcceEEEccCCC
Q 001168 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 645 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~d~~ 645 (1134)
||+.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|||+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999999988653 79999999999999888754 59999999888777775331 234678999999999
Q ss_pred EEEEEeCCCcEEEEECCCc
Q 001168 646 LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|++|+.||.|++||+.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-38 Score=366.51 Aligned_cols=247 Identities=21% Similarity=0.351 Sum_probs=231.5
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.++|++++|+|++++|++|+.||+|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987665 7889999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001168 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++||+.++.....+..|...|.++.|+|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999998865 89999999999999999999999999999999999999999999999985
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC--------------------CCEEEEEeCCCeEEEEECCCCeeE
Q 001168 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.++++|+.|+.|++||+.++.++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78899999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+.+|. ..|.+++|+|+|++|++++.||.|++||..++
T Consensus 332 ~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 9998764 47999999999999999999999999998765
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.6e-38 Score=350.82 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=227.8
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999887655 6778999999999999999 899999999999999
Q ss_pred CCCC----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 001168 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 484 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
+.++ +....+.+|.+.|.++.|+++ ..+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 355678899999999999865 369999999999999999999888999999999999999999999999
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001168 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
+. |+.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+.....|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 85 78899999999999999999887 89999999999999999999999999999999888877555555799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCc
Q 001168 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|+|+|++|++|+.|+.|++||..++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998765
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-38 Score=356.09 Aligned_cols=293 Identities=13% Similarity=0.131 Sum_probs=239.5
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeC------CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 344 NQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
.|+..|++++|||||+ +||+|+. ||.|++|+..++........ ...+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEEc
Confidence 3788999999999998 7888887 67899999887764432111 134688999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcccc-eeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 496 (1134)
|+++++ +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 677899999999998765432 224558999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe--cCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEe
Q 001168 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1134)
...|.+++|+++++ .++++++.|++|++||+++++....+ ..+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999988754 58899999999999999988776544 3456689999999985 56667653 78899999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEe
Q 001168 574 ESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTT 651 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~ 651 (1134)
+++++.+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+++++.+..+ . +...|++++|+| |+.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~--H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S--HRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C--CSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C--CCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 3 355899999998 899999999
Q ss_pred CCCcEEEEECCCc
Q 001168 652 SDNGIKILANSDG 664 (1134)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1134)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=349.77 Aligned_cols=304 Identities=16% Similarity=0.236 Sum_probs=250.4
Q ss_pred ceEEEEec-CCC-CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001168 337 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 337 ~~~~~~l~-h~~-~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
.+++.++. |.+ .|++++|||+|+ +||+|+.||+|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 35667776 776 999999999998 789999999999999987753321 01246899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eeeE
Q 001168 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 491 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~~~ 491 (1134)
+|+|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23347889999999999999999 8999999999999999876 3466
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001168 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+.+|...|.+++|+|+|++|++++. |++|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999998865 8999999999999999987653 4577889999999999999999999985 8889
Q ss_pred EEEeCCC---------------CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----eEEE---Ee
Q 001168 570 VEWNESE---------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTT---VD 627 (1134)
Q Consensus 570 ~~wd~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~---~~ 627 (1134)
++||... .+++..+.+.+...|.+++|+|++..+++++.|+.|++|+...+. +... ..
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 9999632 134556666445589999999999999999999999999987542 1111 11
Q ss_pred CCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEECCCchh
Q 001168 628 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVR 666 (1134)
Q Consensus 628 ~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~~~ 666 (1134)
...+...|.+++|+|++ .+|++++.||+|++|+..++++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 22445689999999987 5999999999999999988743
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=343.09 Aligned_cols=297 Identities=13% Similarity=0.117 Sum_probs=239.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccc-cccccccccCCcCeEEEEECCCCCEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-PLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
|...|.+++|||||+ +|++++ |+++++||..... |+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 456799999999998 677766 7888888743211 11000000 00001123467789999999985 68
Q ss_pred EEEeCCCeEEEEEcCCCCcccce-eEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001168 424 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|.+.|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCee
Q 001168 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
++|++++. .+|++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. |+.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99988653 588999999999999999988877654 455679999999965 56677764 88899999999999
Q ss_pred EEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEE
Q 001168 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 657 (1134)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~ 657 (1134)
+.++.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +.+| ...|.+++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999988 89999999998 578999999999999999987654 4444 55899999999886 677999999999
Q ss_pred EEECCCc
Q 001168 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.7e-38 Score=352.52 Aligned_cols=320 Identities=15% Similarity=0.189 Sum_probs=226.9
Q ss_pred CcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCccc
Q 001168 735 DVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 814 (1134)
Q Consensus 735 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 814 (1134)
++.++....+.....|+++.... ..|...|.+++|||||++|++++.|. +++||-
T Consensus 16 ~~~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~------------- 70 (357)
T 4g56_B 16 ENLYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG------------- 70 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE-------------
T ss_pred cceEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC-------------
Confidence 34444555557778888763211 24889999999999999999998742 233331
Q ss_pred ccCcccccCCCCCccccc-cCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEE----EecCCCCceEEEEE
Q 001168 815 NVAPQLWQPPSGTLMTND-INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLAF 889 (1134)
Q Consensus 815 ~~~~~~w~~~~~~~~~~~-~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~ 889 (1134)
.+++|+..++...... .....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|
T Consensus 71 --~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 71 --SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp --EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred --eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 1233444443322111 111226 888999999999987776669999999999876543 34579999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001168 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++...... ..
T Consensus 148 sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~ 223 (357)
T 4g56_B 148 FS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FC 223 (357)
T ss_dssp CS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CT
T ss_pred CC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---ec
Confidence 99 999999999999999999999999999999999999999999875 78999999999999999887543211 11
Q ss_pred CCCCCCcCceEEEEcCCC-cEEEE-EECCeEEEEeC-CCccccccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEE
Q 001168 969 GRQSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg-~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~~~~~dg~I~vw 1044 (1134)
.+. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++|++|+.||+|+||
T Consensus 224 ~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw 297 (357)
T 4g56_B 224 ASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVL 297 (357)
T ss_dssp TCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred ccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 222 468999999985 56777 46899999999 55555544 4568999999999997 579999999999999
Q ss_pred eCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1045 DAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
|+++++.+..+. |...+.+++|+|.|+.+|+||+.||+|++|++....
T Consensus 298 d~~~~~~~~~~~-----------H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 298 DADFSEVFRDLS-----------HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CTTSCEEEEECC-----------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ECCCCcEeEECC-----------CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999998876542 335677999999888999999999999999997544
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=358.21 Aligned_cols=306 Identities=13% Similarity=0.210 Sum_probs=251.2
Q ss_pred EEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEc----cCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001168 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
+....|.+.|++++|+|+|+.+||+|+.||.|++||+ .+++.+..... ...+.. .........+|.+.|.+++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRH--PFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEEC--CCCCC------CBCEEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccccc--cccccccccCCCCceEEEE
Confidence 4444477899999999999746889999999999999 87763110000 000000 0000001234788999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001168 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4444443 6778999999999999999 899999999999999999999999988
Q ss_pred CCCC---------------eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001168 496 HEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 496 h~~~---------------v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
+... +.+++|+++ ..+++++.|+.|++||+.+.+....+..+...|.+++|+|+++++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8777 999999875 4799999999999999999988888889999999999999999999987
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001168 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
. ++.|++||+.+++.+..+..|.. .+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+. ..|.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEE
Confidence 4 78899999999999999988877 89999999999 99999999999999999999999888664 47999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCch
Q 001168 641 NKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+|++++|++++.||.|++||+.++.
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999998763
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6e-37 Score=337.01 Aligned_cols=248 Identities=18% Similarity=0.298 Sum_probs=225.6
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+|++++|++|+.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887655 7788999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECC-CCCEEEEEee
Q 001168 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1134)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999998865 8999999999999999988744 456788999999999999 6788999885
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001168 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
|+.|++||+.++.....+..++...+..+.|+| ++.++++++.|+.|++||+.+++++..+..|. ..|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEEEE
Confidence 888999999988877777665555889999987 67899999999999999999999999998774 4799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCc
Q 001168 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|+|++++|++++.||+|++||..++
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999876
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8e-37 Score=343.52 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=226.0
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999998876554 6678999999999999999 899999999999999
Q ss_pred CCCC------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC--CCCE
Q 001168 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 555 (1134)
Q Consensus 484 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 555 (1134)
+... .....+.+|...|.+++|++++ ..|++++.|++|++||+++++....+..|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8653 3456777899999999998765 7999999999999999999999999999999999999987 5689
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001168 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+..++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999975 78899999999999999999887 8999999999999999999999999999999888877765555578
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++|+|+|.+|++++.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999998766
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-37 Score=354.66 Aligned_cols=341 Identities=13% Similarity=0.161 Sum_probs=283.3
Q ss_pred eEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC----CCCe------eeEEecC-----
Q 001168 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG----- 495 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~----~~~~------~~~~~~~----- 495 (1134)
.+.+|+++...... ....|.+.|.+++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp --------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred ccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 35678876543222 34457799999999999985 6899999999999999 8888 4555544
Q ss_pred -----CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001168 496 -----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 496 -----h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
|.+.|.+++|+|++ .+|++++.||.|++|| .+++....+..|...|.+++|+|+++++++++. ++.|+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~ 174 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDG--NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTI 174 (425)
T ss_dssp ------CBCEEEEEECTTS--SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEE
T ss_pred ccccCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEE
Confidence 68899999998854 8999999999999999 566777788889999999999999999999874 78899
Q ss_pred EEeCCCCeeEEEecCccCcc---------------eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001168 571 EWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+||+.+++.+..+..+.. . +.+++|++++ .+++++.+|.|++||+.+++.+..+..+. ..|
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i 250 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPI 250 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCS--SCE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCC--Cce
Confidence 999999999998887765 4 8889999875 68889999999999999999888887654 479
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCC
Q 001168 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1134)
.+++|+|++++|++++.|+.|++||+.++. ....
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~--------------------------------------------- 284 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNC--------------------------------------------- 284 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEE---------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceE---------------------------------------------
Confidence 999999999999999999999999986541 0000
Q ss_pred CCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccce
Q 001168 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 795 (1134)
T Consensus 285 -------------------------------------------------------------------------------- 284 (425)
T 1r5m_A 285 -------------------------------------------------------------------------------- 284 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEE
Q 001168 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM 874 (1134)
Q Consensus 796 v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~ 874 (1134)
+.. | ...|.+++|+|++ ++++++ ||.|++||+.+++.+
T Consensus 285 -------------------------------------~~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 285 -------------------------------------FYG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp -------------------------------------ECC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred -------------------------------------ecC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence 000 4 6778999999999 888888 999999999999999
Q ss_pred EEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce--------------------EEEEecCccc--ceEEEEE
Q 001168 875 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLAF 932 (1134)
Q Consensus 875 ~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~--------------------~~~~l~~h~~--~i~~l~~ 932 (1134)
..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|
T Consensus 324 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 324 ALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp EEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred EecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence 99999999999999999 89999999999999999999888 8899999977 9999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeCC
Q 001168 933 SPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
+|++++|++++.|+.|++|+++
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999986
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-36 Score=333.47 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=256.9
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001168 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
....++. |.+.|++++|+|+|+ +|++|+.||.|++|++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 3445555 899999999999998 788999999999999988776543 5689999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC
Q 001168 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 496 (1134)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 7789999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001168 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
..+|.+++|++++ .+|++++.|+.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998754 899999999999999999888766554 45568999999999999999874 7889999999
Q ss_pred CCeeEEEecCccCcc--eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe--
Q 001168 576 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 651 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-- 651 (1134)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|++.++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence 999999998886522 2233334678899999999999999999999999998764 4799999999999999987
Q ss_pred CCCcEEEEECC
Q 001168 652 SDNGIKILANS 662 (1134)
Q Consensus 652 ~dg~i~iw~~~ 662 (1134)
.|++|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 32
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-36 Score=347.25 Aligned_cols=310 Identities=15% Similarity=0.240 Sum_probs=252.0
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
++.+.+.|.+.|+|++|||||+ +||+|+ ++.++||++.+++.+.......-.. .............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 4556677999999999999998 677776 7899999999987654311000000 000000000111244469999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
|||++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999876554 7789999999999999999 89999999999999999999888776 66
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-------cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001168 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
..+.+++++|. ++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|++++|++++. |+.|+
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 78999999873 4489999999999999999988766655 567889999999999999999985 88899
Q ss_pred EEeCCCC------------eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001168 571 EWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 571 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
+||+++. .+...+.+|.. .|.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|. ..|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEE
Confidence 9999753 34567778877 89999999999999999999999999999999999998774 479999
Q ss_pred EEcc------CCCEEEEEeCCCcEEEEECCCc
Q 001168 639 RFNK------EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~------d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|++ ++.+|++|+.||+|++|++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9876 6889999999999999998543
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-37 Score=353.43 Aligned_cols=294 Identities=15% Similarity=0.199 Sum_probs=253.7
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|++++|+|++++|++|+.|++|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999886554 7789999999999999999 899999999999999
Q ss_pred CCCCe-------eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-----cCCCCcEEEEEECC
Q 001168 484 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 551 (1134)
Q Consensus 484 ~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~ 551 (1134)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.+++....+ .+|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999988643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001168 552 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 552 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
+++++++++. |+.|++||++ .++.+..+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8889999875 8889999998 5678888999887 8999999999999999999999999999999999888654
Q ss_pred CC-----CCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCccccc
Q 001168 630 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1134)
Q Consensus 630 ~~-----~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1134)
.. ...|.+++|+|+|++|++|+.||.|++||..++ +....+..
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~------------------------------- 338 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGT------------------------------- 338 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECC-------------------------------
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEec-------------------------------
Confidence 32 234899999999999999999999999998766 21111100
Q ss_pred ccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCC
Q 001168 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1134)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 784 (1134)
...+|...|.+++|+|+|
T Consensus 339 --------------------------------------------------------------~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 339 --------------------------------------------------------------LQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp --------------------------------------------------------------SCSSCCCCCCEEEECSSS
T ss_pred --------------------------------------------------------------ccCCCCCceEEEEECCCC
Confidence 002377889999999999
Q ss_pred cceeeeeccceEEEeecc
Q 001168 785 LSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 785 ~~l~~~~~dg~v~vw~~~ 802 (1134)
++|++++.|+.|++|++.
T Consensus 357 ~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SEEEEECTTSCEEEEECC
T ss_pred CEEEEeeCCCCEEEEecC
Confidence 999999999999999875
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=336.37 Aligned_cols=297 Identities=15% Similarity=0.206 Sum_probs=234.4
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc-c-cCCcCeEE
Q 001168 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL-N-DAAISVNR 413 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~h~~~V~~ 413 (1134)
.+++.++. |.++|++++|+|+ +||+|+.||+|+|||+.++..... ..+ . +|...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEE
Confidence 34566777 9999999999998 689999999999999987532110 012 2 49999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCC----cccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---
Q 001168 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~--- 486 (1134)
++|+|++++||+|+.|++|++||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999986432 1223446789999999999999999 899999999999999943
Q ss_pred -CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC--CceeEecCCCCcEEEEEECCC--CCEEEEEee
Q 001168 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGT 561 (1134)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~ 561 (1134)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... +....+.+|...|.+++|+|+ +.++++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 25677899999999999998865 89999999999999998766 456678899999999999999 678888874
Q ss_pred CCCCCCcEEEEeCCCC--------eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCC
Q 001168 562 SKEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG 631 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 631 (1134)
|++|++||+.++ .....+...+...|.+++|++++ .|++++.||.|++|+..+++. .... ...+
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 788999998765 44555665333489999999765 899999999999999988742 3222 2233
Q ss_pred CC-CcceEEEcc--CCCEEEEEeCCCcEEEEECCC
Q 001168 632 LP-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 632 ~~-~v~~~~~s~--d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.. .|.+++|+| ++++|++++.||+|++|++++
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 789999999 789999999999999999864
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.2e-36 Score=333.55 Aligned_cols=247 Identities=19% Similarity=0.285 Sum_probs=220.5
Q ss_pred cccCCcCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCCc--ccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001168 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg-~~las~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 77999999999999965 8999999999999999875432 123447889999999999999999 899999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC------C
Q 001168 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG------T 554 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~------~ 554 (1134)
+||+.+++.+..+.+|...|.+++|++++ .+|++++.|++|++||++ ......+..|...|.+++|+|.+ .
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998755 899999999999999996 45667788899999999999954 4
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001168 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
.+++++. |+.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888874 88899999999999999999887 8999999999999999999999999999999999888754 36
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|.+++|+|++.++++++.+ .+++|++..+
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 8999999999999988765 5999998766
No 36
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.4e-35 Score=382.93 Aligned_cols=555 Identities=12% Similarity=0.088 Sum_probs=396.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...+.+++|||+ +++ ..+ ++.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~ia-f~~-~~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RII-FVC-CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EEE-EEE-TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EEE-EEE-CCcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 444 444 3799999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEcCCCCcccceeEeecccCCe-------eEEEEecCCCcEEEEEEcCC------CcEEEEECC
Q 001168 425 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1134)
Q Consensus 425 s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~l~~s~d~~~~~l~sg~~d------~~i~iwd~~ 485 (1134)
+++.+ ..|++||+.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 4799999988652 2567788888 9999999998 77777754 468888887
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEec------------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCC
Q 001168 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1134)
+++.. .+..+. ...++|+| | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77654 333332 34566876 4 7777753 345677765444555566888899999999988
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC--
Q 001168 554 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 630 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 630 (1134)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 356677776543 44445555554 35667999999988887 48999999995443 33443321
Q ss_pred -------CCCCcceEEEc-cCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCccc
Q 001168 631 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 631 -------~~~~v~~~~~s-~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+...+.+++|+ |||++|++++ ++.+.+|+..++. ... +.
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~------------------------------ 333 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VP------------------------------ 333 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CS------------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-cc------------------------------
Confidence 11258999999 9999999887 7899999886551 100 00
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCccccc-ceEEEEEe
Q 001168 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVRLIYT 781 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 781 (1134)
.+.. .+..++|+
T Consensus 334 -------------------------------------------------------------------~~~~~~~~~~~~s 346 (1045)
T 1k32_A 334 -------------------------------------------------------------------EPLRIRYVRRGGD 346 (1045)
T ss_dssp -------------------------------------------------------------------CCSCEEEEEECSS
T ss_pred -------------------------------------------------------------------CCCcceEEeeeEc
Confidence 0233 57789999
Q ss_pred cCCcceeeeeccceEE-EeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-
Q 001168 782 NSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1134)
Q Consensus 782 ~~g~~l~~~~~dg~v~-vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s- 859 (1134)
||+.++.++.++.+. +|++. ++.... +.+ | ...+..++|||||++||+++
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEET
T ss_pred -CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEECC
Confidence 999998888777676 77653 222221 112 5 77899999999999999998
Q ss_pred CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC----------cEEEEEcCCceEEEEecCcccceEE
Q 001168 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg----------~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
++.|++||+.+++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 89999999999998888878999999999999 899998887654 89999999888 6778889889999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEE--EE-E-ECCeEEEEeCCCc
Q 001168 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL--LV-V-HESQISVYDSKLE 1005 (1134)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l--~~-~-~d~~v~vwd~~~~ 1005 (1134)
++|+|||++|++++.++...+|+...... . ...+ ..+..+.+++++... +. . .+.....|++++.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~-----~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 545 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNF-----S-FEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCE-----E-CCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG
T ss_pred ceEcCCCCEEEEEecccCCcCcchhcccc-----c-cccC-----ceeEEEEeCCCCCCccccCcCccccccccccccCH
Confidence 99999999999999999999998764331 0 0111 224455555555432 22 1 1111224555442
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEE-------------EecCCcEEEEeCCCcceeeecCCcccccccccCCCCcc
Q 001168 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYA-------------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~-------------~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
..+. .....|.+.+..++|+|||+++++ ...+..|.+||+.+++... +. ..+
T Consensus 546 ~~~~-~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~-------------~~v 610 (1045)
T 1k32_A 546 YKRS-SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK-------------NNL 610 (1045)
T ss_dssp GGGC-EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE-------------EEE
T ss_pred hHce-EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee-------------cCc
Confidence 2221 112335678999999999987775 1234578889999886432 21 224
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1073 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
.+++++| ||++|++++.| .+++|++.+++
T Consensus 611 ~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 611 TDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred ceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 4788999 88999998866 89999998765
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=343.82 Aligned_cols=293 Identities=13% Similarity=0.149 Sum_probs=226.1
Q ss_pred cccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCc-cccccCCCCCCCCceEEEEec
Q 001168 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-MTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~h~~~~i~~~~~s 849 (1134)
+...|.+++|+|||++|++++ |+++++||... .+|+...... .........| ...|.+++|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s 91 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQT-EAGVADLTWV 91 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEE-SSCEEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeecc-CCCEEEEEEe
Confidence 566799999999999777655 77888887431 1111110000 0000001114 6789999999
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCeEEE----EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc
Q 001168 850 KNDSYVMSAS-GGKVSLFNMMTFKVMT----MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~ 924 (1134)
||+. +++|+ ||+|+|||+.+++.+. .+.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.
T Consensus 92 ~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 92 GERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp TTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9964 56666 9999999999886543 3458999999999999 99999999999999999999999999999999
Q ss_pred cceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCC-cEEEEE-ECCeEEEEe
Q 001168 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYD 1001 (1134)
Q Consensus 925 ~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~v~vwd 1001 (1134)
+.|++++|+|++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|++ ++|+++ .|+.|++||
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999984 789999999999999999875432111 1111 357899999954 577774 689999999
Q ss_pred C-CCccccccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecC
Q 001168 1002 S-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1079 (1134)
Q Consensus 1002 ~-~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1134)
+ +++++..+ .+|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +. +|...+.+++|+|
T Consensus 244 ~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~----------~H~~~V~~v~~sp 309 (344)
T 4gqb_B 244 TKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ----------AHRDFVRDATWSP 309 (344)
T ss_dssp SCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC----------CCSSCEEEEEECS
T ss_pred CCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec----------CCCCCEEEEEEeC
Confidence 9 66666554 4578999999999998 579999999999999999987653 33 3446678999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCC
Q 001168 1080 SEPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1080 ~d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
++..+|++|+.||+|++|++.+.
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCeEEEEEcCCCeEEEEECCCC
Confidence 66668889999999999999753
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=360.58 Aligned_cols=295 Identities=14% Similarity=0.264 Sum_probs=249.5
Q ss_pred CCCeeEEEEecCCCeEEEEE----------eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
...|.+++|||+|+.++++| +.||.|+|||+.+++.... + ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34799999999998789999 8899999999998763211 0 0235889999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCc-ccceeEeecccCCeeEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe-----
Q 001168 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR----- 488 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~~i~iwd~~~~~----- 488 (1134)
|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1133467789999999999998 66 89999999999999999886
Q ss_pred -eeE---EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC------CCcEEEEEECCCC-CEEE
Q 001168 489 -KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TRLF 557 (1134)
Q Consensus 489 -~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~ 557 (1134)
... .+.+|...|.+++|+|++ +.+|++++.|+.|++||+++.+....+..+ ...+.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 346799999999998862 379999999999999999998888877776 6789999999998 5777
Q ss_pred EEeeCCCCCCcEEEEeCCCC-eeEEEec-CccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001168 558 SCGTSKEGESHLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
+++.++ .++.|++||++++ .++..+. +|.. .|.+++|+| ++++|++++.|+.|++||+.+++.+..+..|. ..
T Consensus 232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~~ 307 (416)
T 2pm9_A 232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--NW 307 (416)
T ss_dssp EEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--SC
T ss_pred EEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--Cc
Confidence 776421 1228999999986 6777777 7766 899999999 89999999999999999999999999998764 47
Q ss_pred cceEEEccCC-CEEEEEeCCCcEEEEECCCc
Q 001168 635 SPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|.+++|+|++ .+|++++.|+.|++|++.++
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 9999999999 89999999999999999876
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-36 Score=337.54 Aligned_cols=301 Identities=16% Similarity=0.276 Sum_probs=244.3
Q ss_pred ceEEEEec-CCCCeeEEEE-----ec-CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc
Q 001168 337 KTVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI 409 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 409 (1134)
.++..++. |.+.|++++| +| +++ +|++|+.|++|+|||+.+++..... ......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCC
Confidence 34556666 9999999999 77 887 7899999999999999865432110 011123678999
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee
Q 001168 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~ 489 (1134)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.. ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence 99999999999999999999999999999987655 7789999999999999999 899999999999999874 33
Q ss_pred eEEec---CCCCCeEEEEeeccCC--------ccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001168 490 QYTFE---GHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 490 ~~~~~---~h~~~v~~i~~~~~~~--------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
..... +|...|.+++|+|... +.++++++.|++|++||. .......+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 33333 7899999999988642 268999999999999994 44556678889999999999999999999
Q ss_pred EeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEE--EEeCC------
Q 001168 559 CGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------ 629 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------ 629 (1134)
++. |+.|++||+.. ......+.. .. .|.+++|+|++.+++++ .|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred EcC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 985 88899999954 444444432 22 69999999999877654 57789999998876544 33311
Q ss_pred ---CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 630 ---GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 630 ---~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457899999999999999999999999998765
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=335.72 Aligned_cols=207 Identities=16% Similarity=0.277 Sum_probs=179.1
Q ss_pred ceeEeecccC-CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE---EecCCCCCeEEEEeeccCCccEEEEEecC
Q 001168 445 QHLEIDAHVG-GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---TFEGHEAPVYSVCPHHKESIQFIFSTAID 520 (1134)
Q Consensus 445 ~~~~~~~h~~-~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~~~d 520 (1134)
....+.+|.. .|++++|+|+|+ +|++|+.|++|+|||+.++.... ...+|...|.+++|+|++ .+|++++.|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~--~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~s~D 82 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT--LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--NYLASASFD 82 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS--CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--SEEEEEETT
T ss_pred EeeeecCCCCCcEEEEEECCCCC--EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--CEEEEEECC
Confidence 3447788988 999999999999 89999999999999998886442 236899999999998854 899999999
Q ss_pred CeEEEEEccCCC--ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEecCccCcceEEEE
Q 001168 521 GKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQ 595 (1134)
Q Consensus 521 ~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~ 595 (1134)
+++++||+.... ....+.+|...|.+++|+|++++|++++. |+.|++||+.++. .+..+.+|.. .|.+++
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~ 157 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR----DKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVV 157 (345)
T ss_dssp SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEECTTSCEEEEEEECCCCS-CEEEEE
T ss_pred CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC----CCeEEEEECCCCCCeEEEEEecCcCC-CeEEEE
Confidence 999999998764 35678889999999999999999999985 7889999998763 4567777777 899999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeeE--EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001168 596 FDTTRNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|+|++++|++++.|+.|++||..+++.. ..+..| ...|.+++|+|+|++|++++.|++|++|+..
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 9999999999999999999999887644 445544 5689999999999999999999999999864
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.5e-36 Score=334.47 Aligned_cols=306 Identities=21% Similarity=0.286 Sum_probs=261.3
Q ss_pred cccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001168 334 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
..+.++..+|. |.+.|++++|+|++..+||||+.||+|+|||+.+++.... .....+.+|...|.
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVS 90 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEE
Confidence 34455667787 9999999999998545899999999999999987654321 11223678999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-E
Q 001168 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-Y 491 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~ 491 (1134)
+++|+|+|++|++|+.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... .
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEE
Confidence 99999999999999999999999998875544 5567888899999999999 7999999999999998766543 4
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001168 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
.+.+|...+..++|++.....++++++.|+.|++||+.+.+....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~i 241 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAML 241 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEE
Confidence 4678999999999998877789999999999999999999988999999999999999999999999985 888999
Q ss_pred EeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC-------CCCCCCcceEEEccCC
Q 001168 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-------DGGLPASPRLRFNKEG 644 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~d~ 644 (1134)
||+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|||
T Consensus 242 wd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 242 WDLNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EETTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred EEeccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 9999999999888764 799999999875 55666799999999999888776643 2345679999999999
Q ss_pred CEEEEEeCCCcEEEEECCCch
Q 001168 645 SLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
++|++|+.||.|+|||+.+|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999999883
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-35 Score=327.97 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=226.5
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887554 6789999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001168 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+..|...|.+++|+|+++++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 169 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-- 169 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 99999999999999999999998865 89999999999999999999988899999999999999999999999975
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc-c
Q 001168 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-K 642 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~ 642 (1134)
++.|++||+++++.+..+.......+.+++|+|+++++++++.|+.|++||+.+++.+..+..+..........++ +
T Consensus 170 --d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 170 --DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp --TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred --CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 7889999999999888876666558999999999999999999999999999999999998877543333334444 6
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001168 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++.+|++|+.||.|++||+.++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC
T ss_pred CCcEEEEECCCCEEEEEECCCc
Confidence 7899999999999999999876
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6e-36 Score=335.62 Aligned_cols=286 Identities=13% Similarity=0.170 Sum_probs=244.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.++|.+++|||||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 456899999999998 566666666666665443322211 346999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEee--cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--eeEEecCCCCCe
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 500 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h~~~v 500 (1134)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655444554 7999999999999999 89999999999999999887 567788899999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001168 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++|+|++ .++++++.|+.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998854 89999999999999999998888888889999999999999999999874 788999999999988
Q ss_pred EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001168 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88763 33 7999999999999999999999999999988764 34333 45799999999999999999999999999
Q ss_pred CCCc
Q 001168 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8776
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.5e-35 Score=327.14 Aligned_cols=319 Identities=12% Similarity=0.166 Sum_probs=269.5
Q ss_pred cCCcceeEeeCCCCCCccccCc--------cccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc
Q 001168 312 TGQSDEVSFAGVAHTPNVYSQD--------DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (1134)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~~~--------~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~ 383 (1134)
.+++.+++++|||+.++....+ ......+..+.|.+.|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 3467889999999887544322 23445667778999999999999998 677888 9999999999876433
Q ss_pred cccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEec
Q 001168 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463 (1134)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 463 (1134)
.. ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 PV--------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp CS--------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred ee--------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 20 00012368999999999999999999999999999999987632 2336778999999999999
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCc
Q 001168 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (1134)
Q Consensus 464 d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 543 (1134)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998854 899999999999999999887766654 5678
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001168 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999874 778999999988764 5666666 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..... ...+.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 66543 347899999999999999999999999986
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-37 Score=355.13 Aligned_cols=330 Identities=11% Similarity=0.167 Sum_probs=275.4
Q ss_pred cCCeeEEEEecCCCcEEEEEE----------cCCCcEEEEECCCCe---eeEEecCCCCCeEEEEeeccCCccEEEEEec
Q 001168 453 VGGVNDIAFAHPNKQLCIVTC----------GDDKMIKVWDVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg----------~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~ 519 (1134)
...|.+++|+|+++. ++++| +.|+.|++||+.++. .+..+ .|...|.+++|+|++ .+|++++.
T Consensus 12 ~~~v~~~~~sp~g~~-~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~ 87 (416)
T 2pm9_A 12 FSRTATFAWSHDKIP-LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN--KIIAGALD 87 (416)
T ss_dssp EEESCBCCBCSSSSC-EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS--SCEEEEES
T ss_pred hhhcceEeeCCCCCC-EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC--CeEEEEcc
Confidence 346889999999875 78898 899999999999876 34444 589999999998754 89999999
Q ss_pred CCeEEEEEccC----CCceeEecCCCCcEEEEEECCC-CCEEEEEeeCCCCCCcEEEEeCCCCe------eEEE---ecC
Q 001168 520 DGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA------IKRT---YSG 585 (1134)
Q Consensus 520 d~~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~---~~~ 585 (1134)
||.|++||+.. ......+..|...|.+++|+|+ ++++++++. ++.|++||+.+++ .... +..
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN----NGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS----SSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC----CCeEEEEECCCCccccccccccccccccC
Confidence 99999999987 3466778889999999999998 889999874 7889999999876 3333 345
Q ss_pred ccCcceEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----CCCcceEEEccCC-CEEEEEeCCC---cE
Q 001168 586 FRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEG-SLLAVTTSDN---GI 656 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~d~-~~l~~~~~dg---~i 656 (1134)
|.. .|.+++|+|+ +.++++++.|+.|++||+.+++.+..+..+.. ...|.+++|+|++ .++++++.|+ .|
T Consensus 164 ~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 164 SVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp SSC-CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCC-CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 555 8999999999 78999999999999999999999988876531 4579999999997 6899999998 99
Q ss_pred EEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCc
Q 001168 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
++||+.++......
T Consensus 243 ~~~d~~~~~~~~~~------------------------------------------------------------------ 256 (416)
T 2pm9_A 243 LIWDLRNANTPLQT------------------------------------------------------------------ 256 (416)
T ss_dssp CEEETTSTTSCSBC------------------------------------------------------------------
T ss_pred EEEeCCCCCCCcEE------------------------------------------------------------------
Confidence 99998764100000
Q ss_pred ccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCccccc
Q 001168 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 816 (1134)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCC
Q 001168 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 817 ~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
+. ..| ...|.+++|+| ++++|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++
T Consensus 257 ----------------~~-~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~ 317 (416)
T 2pm9_A 257 ----------------LN-QGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EA 317 (416)
T ss_dssp ----------------CC-SCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TC
T ss_pred ----------------ee-cCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CC
Confidence 00 015 77889999999 899999998 89999999999999999999999999999999 66
Q ss_pred -cEEEEEeCCCcEEEEEcCCceEEEEec-----------------------------------CcccceEEEEEecCCCE
Q 001168 895 -NIIAIGMEDSSVQIYNVRVDEVKTKLK-----------------------------------GHQNRITGLAFSPTLNA 938 (1134)
Q Consensus 895 -~~lasg~~dg~i~iwd~~~~~~~~~l~-----------------------------------~h~~~i~~l~~s~d~~~ 938 (1134)
.+|++++.||.|++||+.+++...... .|...+.+++|+|||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 899999999999999998765322211 16778889999999999
Q ss_pred EEEEcCCCcEEEEeCCCc
Q 001168 939 LVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~~ 956 (1134)
|++++.|++|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999874
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.3e-36 Score=348.26 Aligned_cols=283 Identities=15% Similarity=0.152 Sum_probs=239.3
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 466899999998 578899999999999998776542 3334 4456668899999999999
Q ss_pred CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876543 5678999999999999999 899999999999999999999999999999999999988
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEecC---CC---------------------CcEEEEEECCCCCEEEEEeeCC
Q 001168 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PG---------------------NWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~---------------------~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
++ .+|++++.|++|++||+++++....+.. +. ..+.+++|+|+++++++++.
T Consensus 192 ~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 RG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp TT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred CC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 54 8999999999999999998887777654 22 33444556889999999874
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCCee-EEEEeCCCCCCCcceEEEc
Q 001168 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s 641 (1134)
++.|++||+++++.+..+...+...+.+++|+|++. ++++++.||.|++||+.+++. +..+..+. ...+.++.+
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~- 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF- 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE-
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe-
Confidence 788999999999988888765555899999999998 999999999999999998754 66676543 236777754
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001168 642 KEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++++|++++.|+.|++|++.+.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.7e-36 Score=345.69 Aligned_cols=345 Identities=11% Similarity=0.102 Sum_probs=282.4
Q ss_pred cCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001168 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999998876554 33445 4455557899999 89999999999999999999
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001168 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 998889999999999998864 89999999999999999999999999999999999999999999999875 788
Q ss_pred EEEEeCCCCeeEEEecCcc--CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCE
Q 001168 569 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 646 (1134)
|++||+++++.+..+..+. ...+.+++|.+.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999988642 2368888887654321 001 12346788999999999
Q ss_pred EEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccC
Q 001168 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1134)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1134)
|++++.||.|++||+.++.. ...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~-~~~-------------------------------------------------------- 284 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQ-TIQ-------------------------------------------------------- 284 (420)
T ss_dssp EEEEETTSCEEEEETTTCCE-EEE--------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCce-eEE--------------------------------------------------------
Confidence 99999999999999865510 000
Q ss_pred CCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccC
Q 001168 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1134)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~ 806 (1134)
+
T Consensus 285 -----------------------------------------------------------------------~-------- 285 (420)
T 3vl1_A 285 -----------------------------------------------------------------------L-------- 285 (420)
T ss_dssp -----------------------------------------------------------------------E--------
T ss_pred -----------------------------------------------------------------------c--------
Confidence 0
Q ss_pred CCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC-EEEEEe-CCeEEEEEcCCCeE-EEEecC-CCC
Q 001168 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PPP 882 (1134)
Q Consensus 807 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~-~~~~~~-~~~ 882 (1134)
.. .| ...|.+++|+|++. +|++++ ||.|++||+.+++. +..+.+ |..
T Consensus 286 --------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 286 --------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp --------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred --------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 00 14 67789999999998 888888 89999999988643 566665 667
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc---------eEEEEecCcccceEEEEEecCCC---EEEEEcCCCcEEE
Q 001168 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCM 950 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~i 950 (1134)
.|.++.++ ++++|++++.||.|++|++... .....+.+|.+.|.+++|+||+. .|++++.++.+.+
T Consensus 337 ~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 337 PINNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp CEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 78888654 5789999999999999998763 22234668899999999999999 7888888999999
Q ss_pred EeCCC
Q 001168 951 WSIDK 955 (1134)
Q Consensus 951 Wd~~~ 955 (1134)
|+++.
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99875
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=353.31 Aligned_cols=275 Identities=10% Similarity=0.060 Sum_probs=213.9
Q ss_pred cceEEEEecCCCCeeEEEEecCC-C-------eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccC
Q 001168 336 TKTVVRTLNQGSNVMSMDFHPQQ-Q-------TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg-~-------~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
++....++.+.+.|++|+|+|++ . .+||+|+.++. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~---------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D---------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------
Confidence 45556677788999999999997 1 47888875431 0
Q ss_pred CcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCccc-ceeEeecccCCeeEEEEecC------CCcEEEEEEcCCCcEE
Q 001168 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d------~~~~~l~sg~~d~~i~ 480 (1134)
-..+|+++.+|+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+ +. +||+++.|++|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 0136899999999999999999998876422 12245678899999999997 45 899999999999
Q ss_pred EEECCCCee-----------eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEE-
Q 001168 481 VWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM- 547 (1134)
Q Consensus 481 iwd~~~~~~-----------~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~- 547 (1134)
+||+.++.. ...+.+|...|++++|++. ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 2478899999999999863 4899999999999999997644 44678899999999
Q ss_pred -EECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEE
Q 001168 548 -AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 548 -~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
+|+|++ .+|++++. |++|++||+++++.+..+.+|.. ..|.+++|+|+++.+++++.|++|++||++++..+.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 678888 88999985 88999999999888777777653 247889999999999999999999999999998888
Q ss_pred EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001168 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+..| ...|.+++|+|+|++|++|+.||+|++||...
T Consensus 392 ~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 88766 45899999999999999999999999999743
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=323.20 Aligned_cols=306 Identities=15% Similarity=0.199 Sum_probs=231.5
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001168 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+.+.+..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ +....+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4567788899888 8999999987 9999999999999999875 445555332355689999999999999999999
Q ss_pred CcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccc
Q 001168 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1134)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1134)
++|++|+....... ..
T Consensus 80 ~~v~iw~~~~~~~~--~~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADR--TF-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCc--cc--------------------------------------------------------------
Confidence 99999997543000 00
Q ss_pred cCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcc
Q 001168 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1134)
Q Consensus 734 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 813 (1134)
... + +..
T Consensus 96 -------------------------------------------------~~~-~--------~~~--------------- 102 (330)
T 2hes_X 96 -------------------------------------------------EMD-L--------LAI--------------- 102 (330)
T ss_dssp -------------------------------------------------CCE-E--------EEE---------------
T ss_pred -------------------------------------------------cce-e--------EEE---------------
Confidence 000 0 000
Q ss_pred cccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCC----CeEEEEecCCCCceEEEE
Q 001168 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFLA 888 (1134)
Q Consensus 814 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~ 888 (1134)
+.+ | ...|.+++|+|+|++||+|+ |++|++||+.. .+++..+.+|...|.+++
T Consensus 103 -------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 103 -------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp -------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred -------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 112 6 88899999999999999998 89999999842 367788999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcCCc--eEEEEecCcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCCccccc---c
Q 001168 889 FHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLK---S 961 (1134)
Q Consensus 889 ~s~~~~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~---~ 961 (1134)
|+| ++.+|++|+.|++|++||+.++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.... .
T Consensus 161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 161 WHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 999 8999999999999999998776 678899999999999999998 7789999999999999997653211 0
Q ss_pred eeeecCCC-CCCCCcCceEEEEcCCCcEEEE-EECCeEEEEeC-CCccccccCCCCCCCC-CeEEEEEcc--CCCEEEEE
Q 001168 962 RFIQAPAG-RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPA-PISSAIYSC--DGLLVYAG 1035 (1134)
Q Consensus 962 ~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~-~v~~v~~s~--dg~~l~~~ 1035 (1134)
.......+ |. ..|.+++|++++ +|++ +.|+.|++||. .+..........+|.. .|.+++|+| ++++|++|
T Consensus 240 ~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 240 VCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp EEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred EEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 12222222 44 579999999877 4555 78999999998 3321111111245666 899999999 78999999
Q ss_pred ecCCcEEEEeCCC
Q 001168 1036 FCDGAIGVFDAET 1048 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~ 1048 (1134)
+.||+|++||+++
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999875
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=352.21 Aligned_cols=357 Identities=9% Similarity=0.089 Sum_probs=268.9
Q ss_pred ccCCcCeEEEEECC-CCCEEEEEeCCCeEEEEEcCC---CCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001168 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 405 ~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
.+|.+.|.+++|+| ++++||+|+.||+|++||+.+ +........+ +|...|.+++|+|+++ +|++|+.|+.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 67999999999999 999999999999999999977 5433333333 5999999999999999 899999999999
Q ss_pred EEECC---CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE--ECCCCCE
Q 001168 481 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 555 (1134)
Q Consensus 481 iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 555 (1134)
+||+. +++.+..+.+| .+..+.+++.. +...+.++. +++++.+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777776666 67777776532 122334444 6789999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecC--ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001168 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++|+.||.|++||+++++++..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999874 78899999999999999998 555 89999999999999999999999999999999998886322 24
Q ss_pred CcceEEEc----cCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCC
Q 001168 634 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1134)
Q Consensus 634 ~v~~~~~s----~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1134)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.++..
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~--------------------------------- 304 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDE--------------------------------- 304 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSS---------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCC---------------------------------
Confidence 78999555 56889999999999999999887 44444444332
Q ss_pred CCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceee
Q 001168 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1134)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 789 (1134)
.+..+.|+|+++.+.
T Consensus 305 ----------------------------------------------------------------~~~~~~~~~~~~~l~- 319 (437)
T 3gre_A 305 ----------------------------------------------------------------QPSMEHFLPIEKGLE- 319 (437)
T ss_dssp ----------------------------------------------------------------CCCGGGGSCBCSSGG-
T ss_pred ----------------------------------------------------------------CCccceecccccccc-
Confidence 122223334433220
Q ss_pred eeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEc
Q 001168 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (1134)
Q Consensus 790 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~ 868 (1134)
+.. +.+..| ...|++++|+ ++++|++|+ ||.|++||+
T Consensus 320 ---~~~-------------------------------------~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 320 ---ELN-------------------------------------FCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp ---GCC-------------------------------------CCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred ---cce-------------------------------------eccccc-CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 000 111126 8889999999 889999998 999999999
Q ss_pred CCCeEEEEecCCCC---ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecC--CCEEEEEc
Q 001168 869 MTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSSG 943 (1134)
Q Consensus 869 ~~~~~~~~~~~~~~---~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~ 943 (1134)
.+++....+.+|.. .+....+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|+|++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99998888887643 456667777 55555443 333444555667789999999999998 78999999
Q ss_pred CCCcEEEEe
Q 001168 944 ADAQLCMWS 952 (1134)
Q Consensus 944 ~D~~i~iWd 952 (1134)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-34 Score=323.80 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=210.2
Q ss_pred ccccCCcCeEEEEE-----CC-CCCEEEEEeCCCeEEEEEcCCCCc----ccceeEeecccCCeeEEEEecCCCcEEEEE
Q 001168 403 LLNDAAISVNRCVW-----GP-DGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~-----sp-dg~~las~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s 472 (1134)
.+.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 37789999999999 77 999999999999999999986542 123346789999999999999999 8999
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec---CCCCcEEEEEE
Q 001168 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAY 549 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 549 (1134)
|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+.. ....... .|...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~--~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN--RQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST--TEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC--CEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999998865 8999999999999999973 3333332 57778999999
Q ss_pred CCCC----------CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC-
Q 001168 550 SADG----------TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD- 618 (1134)
Q Consensus 550 s~~~----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~- 618 (1134)
+|++ .++++++. |+.|++|| ..++....+.+|.. .|.+++|+|++++|++|+.||.|++||+.
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68888874 88899999 55677788888887 89999999999999999999999999994
Q ss_pred CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.......+.. . ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 245 ~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444454432 2 368999999999887755 5778999999776
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-34 Score=327.15 Aligned_cols=303 Identities=14% Similarity=0.264 Sum_probs=236.5
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC------------------CcEEEEEECCCCCEE
Q 001168 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------------NWCTMMAYSADGTRL 556 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l 556 (1134)
+|...|.+++|+|++ .+|++++ ++++++|++.+++....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fspdg--~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCC--CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 699999999998854 8898876 7899999999888776665432 248999999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001168 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
++++. |+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..+ ..+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC---CCcE
Confidence 99985 78899999999999999999987 8999999999999999999999999999999988887654 3589
Q ss_pred eEEEcc-CCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCC
Q 001168 637 RLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1134)
Q Consensus 637 ~~~~s~-d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1134)
+++|+| ++++|++++.|+.|++||+.++ .....+....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~---------------------------------------- 249 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSEN---------------------------------------- 249 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccc----------------------------------------
Confidence 999999 9999999999999999998776 2211110000
Q ss_pred CCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccce
Q 001168 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 795 (1134)
....+|...|.+++|+|+|++|++++.|+.
T Consensus 250 --------------------------------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 250 --------------------------------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp -----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --------------------------------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 000124445555555555555555555555
Q ss_pred EEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEE
Q 001168 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT 875 (1134)
Q Consensus 796 v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~ 875 (1134)
|++||+..... ..... ....+.+..
T Consensus 280 v~~wd~~~~~~------------------------------------~~~~~-------------------~~~~~~~~~ 304 (393)
T 1erj_A 280 VKLWNLQNANN------------------------------------KSDSK-------------------TPNSGTCEV 304 (393)
T ss_dssp EEEEEC----------------------------------------------------------------------CEEE
T ss_pred EEEEECCCCCC------------------------------------ccccc-------------------CCCCCcceE
Confidence 55555421000 00000 001234556
Q ss_pred EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEec------CCCEEEEEcCCCcEE
Q 001168 876 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP------TLNALVSSGADAQLC 949 (1134)
Q Consensus 876 ~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~------d~~~l~s~~~D~~i~ 949 (1134)
.+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++.+|+|++.|++|+
T Consensus 305 ~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 305 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp EEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred EEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 7788999999999999 899999999999999999999999999999999999999986 688999999999999
Q ss_pred EEeCCC
Q 001168 950 MWSIDK 955 (1134)
Q Consensus 950 iWd~~~ 955 (1134)
+|++..
T Consensus 384 iW~~~~ 389 (393)
T 1erj_A 384 IWKYKK 389 (393)
T ss_dssp EEEEEE
T ss_pred ECcccc
Confidence 999875
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-34 Score=357.06 Aligned_cols=298 Identities=20% Similarity=0.284 Sum_probs=253.2
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
....+. |.+.|++++|+|++..+|++|+.||+|+|||+.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344555 9999999999998766899999999999999987543211 0111367899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe---c
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 494 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~---~ 494 (1134)
|+|++|++|+.|++|++||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999886555 7789999999999999999 7999999999999997655433322 4
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001168 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+|...|.+++|+|+.....+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6899999999998765578999999999999999999888899999999999999999999999985 888999999
Q ss_pred CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-----------------CCCcce
Q 001168 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 637 (1134)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 637 (1134)
.+++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999988876543 799999999998777765 56699999999998887753311 113678
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECC
Q 001168 638 LRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 638 ~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
++|+|+|++|++|+.||.|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
No 54
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1e-33 Score=365.40 Aligned_cols=534 Identities=11% Similarity=0.010 Sum_probs=378.6
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC-----CCcEEEEEccCccccccccceeecccccccccccc
Q 001168 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
.+|.++...++......|...|.+++|||||++|++++.. +..|.+||+.+++...
T Consensus 34 ~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~------------------- 94 (1045)
T 1k32_A 34 DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR------------------- 94 (1045)
T ss_dssp EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-------------------
T ss_pred cEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEE-------------------
Confidence 3555665566666666699999999999999954443332 2489999998876321
Q ss_pred ccccCCcCe-------EEEEECCCCCEEEEEeCC------CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEE
Q 001168 403 LLNDAAISV-------NRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1134)
Q Consensus 403 ~l~~h~~~V-------~~i~~spdg~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~ 469 (1134)
+..|...+ .+++|||||+++++++.+ ..|.+|++.++... .+..+ ....++|+| | +
T Consensus 95 -lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~ 163 (1045)
T 1k32_A 95 -ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---R 163 (1045)
T ss_dssp -CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---E
T ss_pred -cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---E
Confidence 56677777 999999999977777654 46888888776432 22222 345678999 6 4
Q ss_pred EEEEcC------------CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeE
Q 001168 470 IVTCGD------------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVD 536 (1134)
Q Consensus 470 l~sg~~------------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~ 536 (1134)
+++++. +....+|....+.....+.+|...+.++.|+++ .++++++.|+++++|.++.. .....
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~ 240 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRK 240 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceE
Confidence 666542 334566654433445566899999999999764 57778888999999987653 33444
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc----------CcceEEEEEe-CCCCEEEE
Q 001168 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFD-TTRNRFLA 605 (1134)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~ 605 (1134)
+..+. .+...+|+|||++++++. ++.|++||+.... +..+..+. ...+.+++|+ |+|+++++
T Consensus 241 l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 241 HTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp CCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred ecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 44443 456779999999998874 6779999995444 33555421 1258889999 99999998
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCC-CcceEEEccCCCEEEEEeCCCcEE-EEECCCchhhhhhccCCccccCCCCC
Q 001168 606 AGDEFQIKFWDMDNMNMLTTVDADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK-ILANSDGVRLLRMLEGRAMDKNRCPS 683 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1134)
++ ++.|++|++.+++... +..+ .. .+..++|+ ||+.|++++.++.+. +|+..++. .. .+
T Consensus 314 ~~-~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~~-~l------------ 374 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLK-VPEP--LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-AE-KF------------ 374 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEE-CSCC--SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-EE-EC------------
T ss_pred EE-cCEEEEEcCCCCceEE-ccCC--CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-ce-Ee------------
Confidence 87 7899999998877544 3322 23 67899999 999999999888888 88876541 00 00
Q ss_pred CCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeE
Q 001168 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (1134)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 763 (1134)
T Consensus 375 -------------------------------------------------------------------------------- 374 (1045)
T 1k32_A 375 -------------------------------------------------------------------------------- 374 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCce
Q 001168 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (1134)
Q Consensus 764 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i 843 (1134)
. .+...+..++|+|||+.|++++.++.+++||+.+ ++.... ..+ | ...+
T Consensus 375 ---~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t----------------------g~~~~~-~~~--~-~~~v 423 (1045)
T 1k32_A 375 ---E--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET----------------------GKPTVI-ERS--R-EAMI 423 (1045)
T ss_dssp ---C--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------CCEEEE-EEC--S-SSCC
T ss_pred ---c--CCccceeeeEECCCCCEEEEECCCCeEEEEECCC----------------------CceEEe-ccC--C-CCCc
Confidence 0 1345678999999999999999999999998642 322211 112 5 7788
Q ss_pred EEEEeccCCCEEEEEe-CC----------eEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001168 844 ACIALSKNDSYVMSAS-GG----------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s-dg----------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
.+++|||||++|++++ ++ .|++||+.+++ ...+..|...+.+++|+| +|++|++++.++...+|+..
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSS
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchh
Confidence 9999999999999886 44 89999999887 677888888899999999 89999999999999999976
Q ss_pred CceEEEEecCcccceEEEEEecCCCEE--EEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEE
Q 001168 913 VDEVKTKLKGHQNRITGLAFSPTLNAL--VSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l--~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
..... ..+...+..+.+++++... +..+. +.....|+++.... . +.....+. ..+..++|+|||+++
T Consensus 502 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~---~~~l~~~~---~~~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 502 VLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK-R---SSPINVDP---GDYRMIIPLESSILI 571 (1045)
T ss_dssp SSCEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG-G---CEECSCCC---BCEEEEEECSSEEEE
T ss_pred ccccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH-c---eEEcCCCC---CChhheEEcCCCeEE
Confidence 54332 2245556777777766543 22222 22223466554211 1 11111222 457899999999988
Q ss_pred EE------------E--ECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001168 990 LV------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 990 ~~------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
++ + ....|.+||+.......+. ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 75 1 2347888888544444332 468899999999999998766 89999999887
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=354.25 Aligned_cols=224 Identities=7% Similarity=0.000 Sum_probs=170.5
Q ss_pred CCcCeEEEEECCCC---------CEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001168 407 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 407 h~~~V~~i~~spdg---------~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999766420 01368888 899999999
Q ss_pred cEEEEECCCCeee----EEecCCCCCeEEEEeecc----CCccEEEEEecCCeEEEEEccCCCc-----------eeEec
Q 001168 478 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 538 (1134)
Q Consensus 478 ~i~iwd~~~~~~~----~~~~~h~~~v~~i~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~ 538 (1134)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887643 346678899999999996 3467999999999999999986542 23567
Q ss_pred CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEE--EEeCCC-CEEEEEeCCCeEEE
Q 001168 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 614 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 614 (1134)
+|...|++++|++++ .|++++. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888874 8899999999764 4556888877 89998 578887 89999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 99998887766665533235789999999999999999999999998765
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-34 Score=330.24 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=246.1
Q ss_pred cceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001168 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
+......+. |.+.|++++|+|+|..+|++|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 455666666 89999999999999338899999999999999987655321 124699999999
Q ss_pred EECC-CCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001168 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 415 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999986 33332222234558899999999999 8999999999999998 68888999
Q ss_pred cCCCCCeEEEEeeccCCcc-EEEEEecCCeEEEEEccC----CCceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCC
Q 001168 494 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~-~l~s~~~d~~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1134)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999998865 5 999999999999999997 3344444 6888999999999 9999999875 78
Q ss_pred cEEEEeCCCCeeEEEecCccC----------------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001168 568 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
.|++||+++++.+..+.+|.. ..+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 899999999887777765431 13444666666665 677999999999999999999987655
Q ss_pred CCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001168 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
...+..++|+|++++|++++ |+.|++||+++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677889999999999997 89999999864
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-33 Score=328.43 Aligned_cols=319 Identities=18% Similarity=0.301 Sum_probs=274.3
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887543 355579999999999999999999987665 778999999999998 44 799999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001168 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++.+..+.+|...|.++++++ ..+++++.||+|++||+.+++....+..|...|.+++| +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999853 68999999999999999999999999999999999999 7888998874
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001168 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++.|++||+++++.+..+.+|.. .+.+++| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 78899999999999999998877 8999998 789999999999999999999999998876643 5666665 5
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccC
Q 001168 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
+.++++++.||.|++||+.++ +....+.+
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~-------------------------------------------------- 357 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG-QCLQTLQG-------------------------------------------------- 357 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-CEEEEECS--------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEEcc--------------------------------------------------
Confidence 779999999999999998765 11111000
Q ss_pred ccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeeccc
Q 001168 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEe-----
Q 001168 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF----- 877 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~----- 877 (1134)
. ..| ...|.+++|+ ++++++|+ ||.|++||+.+++.+..+
T Consensus 358 -----------------------------~--~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 358 -----------------------------P--NKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp -----------------------------T--TSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred -----------------------------C--CCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence 0 014 6778888884 67899998 999999999999998888
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCc----EEEEEcCC
Q 001168 878 MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 913 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~----i~iwd~~~ 913 (1134)
.+|.+.|.+++|+| ++.++|+|+.||+ |.|||+..
T Consensus 404 ~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46888999999999 9999999999998 99999874
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-33 Score=328.97 Aligned_cols=317 Identities=20% Similarity=0.322 Sum_probs=274.7
Q ss_pred EeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001168 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd 527 (1134)
.+.+|.+.|.. +++++++ ++++|+.||.|++||+.+++.+..+.+|.+.|.++++++ .++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEEE
Confidence 67789887533 3455677 899999999999999999999999999999999999962 6999999999999999
Q ss_pred ccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001168 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
+.+++....+..|...|.+++|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.+++| +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99998888999999999999995 567888874 88899999999999999999887 8999988 688999999
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCC
Q 001168 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1134)
.||.|++||+.+++.+..+..+. ..|.+++| ++.++++++.||.|++||+.++ +....+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~---------------- 315 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTL---------------- 315 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEE----------------
T ss_pred CCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEE----------------
Confidence 99999999999999999888664 47888888 7899999999999999998765 111000
Q ss_pred CCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecC
Q 001168 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1134)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1134)
T Consensus 316 -------------------------------------------------------------------------------- 315 (445)
T 2ovr_B 316 -------------------------------------------------------------------------------- 315 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001168 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 768 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.+ | ...+.++.
T Consensus 316 ------------------------------------------------------------------~~--~-~~~v~~~~ 326 (445)
T 2ovr_B 316 ------------------------------------------------------------------TG--H-QSLTSGME 326 (445)
T ss_dssp ------------------------------------------------------------------CC--C-CSCEEEEE
T ss_pred ------------------------------------------------------------------cC--C-cccEEEEE
Confidence 00 3 45566665
Q ss_pred eccCCCEEEEEe-CCeEEEEEcCCCeEEEEecC---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe---
Q 001168 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--- 920 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l--- 920 (1134)
+ ++.++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+
T Consensus 327 ~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 401 (445)
T 2ovr_B 327 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTL 401 (445)
T ss_dssp E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred E--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeecc
Confidence 5 567888888 89999999999999999886 888999999954 69999999999999999999998888
Q ss_pred --cCcccceEEEEEecCCCEEEEEcCCCc----EEEEeCCC
Q 001168 921 --KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 955 (1134)
Q Consensus 921 --~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iWd~~~ 955 (1134)
.+|.+.|++++|+|++.+|++++.||+ |.+||++.
T Consensus 402 ~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 578899999999999999999999998 99999976
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-34 Score=332.38 Aligned_cols=286 Identities=12% Similarity=0.174 Sum_probs=219.6
Q ss_pred eeCCCCCCccccCccccceEEEEe-c-CCCCeeEEEEec-CCCeEEEEEeCCCcEEEEEccC---ccccccccceeeccc
Q 001168 320 FAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDIS 393 (1134)
Q Consensus 320 ~s~~g~~~~~~~~~~~~~~~~~~l-~-h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~---~~~~~~~~~~~~~~~ 393 (1134)
|++++..++....-...++++..+ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 104 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS--------- 104 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC---------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce---------
Confidence 456666555443223667788888 5 789999999999 997 789999999999999987 331110
Q ss_pred cccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcC---CCCcccceeEeecccCCeeEEEEecCCCcEEE
Q 001168 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (1134)
Q Consensus 394 ~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~---~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l 470 (1134)
....+|...|.+++|+|++++|++|+.||.|++||+. +++... .+.+| .+..+.|++++
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~----- 166 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG----- 166 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS-----
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc-----
Confidence 0012589999999999999999999999999999995 443332 33334 55666665532
Q ss_pred EEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC--CCCcEEEEE
Q 001168 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMA 548 (1134)
Q Consensus 471 ~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~ 548 (1134)
+...+.++.+....++.+|++++.|+.|++||+++.+....+.. |...|.+++
T Consensus 167 -------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 167 -------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp -------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred -------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 34445566655555668999999999999999999998888887 788999999
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec-CccCcceEEEEEe----CCCCEEEEEeCCCeEEEEECCCCeeE
Q 001168 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFD----TTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
|+|++++|++++. ++.|++||+++++.+..+. .+.. .|.+++|+ +++.++++++.||.|++||+.+++.+
T Consensus 222 ~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 222 IDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp ECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 9999999999985 7889999999999999887 4444 89999665 46779999999999999999999999
Q ss_pred EEEeCCC------------------------CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 624 TTVDADG------------------------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 624 ~~~~~~~------------------------~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+..+. +...|.+++|+ ++++|++++.|+.|++||+.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 8887653 22335666666 5566666666666666666655
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=318.86 Aligned_cols=289 Identities=12% Similarity=0.118 Sum_probs=256.1
Q ss_pred EEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC
Q 001168 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
+....|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF 85 (369)
T ss_dssp EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence 33344999999999999998 788999999999999998876653 6689999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCe------
Q 001168 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------ 488 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~~~------ 488 (1134)
+++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999999999987665 444 888999999999999 88999888 999999987653
Q ss_pred -----eeEEecCCCC--CeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001168 489 -----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 489 -----~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.+..+..|.. .+.+++|++++ .+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 3445556666 99999998865 8999999999999999998 566778888999999999999999999987
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC--------------eEEEEECCCCeeEEEE
Q 001168 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~ 626 (1134)
. ++.|++||+.+++.+..+.. .. .+.+++|+|+++++++++.++ .+++||..+++.+..+
T Consensus 238 ~----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 238 R----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp T----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred C----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 4 78899999999999988883 33 799999999999999999888 8999999999999999
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..|. ..|.+++|+|++++|++++.||.|++|++.++
T Consensus 312 ~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 312 QGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred eccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 8764 47999999999999999999999999999876
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.6e-33 Score=313.42 Aligned_cols=294 Identities=19% Similarity=0.299 Sum_probs=242.3
Q ss_pred cceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----eeEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001168 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 444 ~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
....+|+||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|...|.+++|+|++ .+|++++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--~~l~s~~ 105 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--QFALSGS 105 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--SEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--CEEEEEc
Confidence 344478999999999999998533 89999999999999987653 567889999999999998754 8999999
Q ss_pred cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE-ecCccCcceEEEEEe
Q 001168 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFD 597 (1134)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~ 597 (1134)
.|+.|++|+............+...+....++++++++++++. ++.+++||......... ..+|.. .+..++|+
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~ 180 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFS 180 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEEC
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEc
Confidence 9999999999998888888888889999999999999999975 78899999987655443 445555 89999998
Q ss_pred CCC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCc
Q 001168 598 TTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1134)
Q Consensus 598 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 675 (1134)
+++ ..+++++.|+.|++||+.+++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.+.. .+..+
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~---- 253 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYTL---- 253 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-EEEEE----
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-eeeee----
Confidence 875 578889999999999999999999988764 489999999999999999999999999986541 00000
Q ss_pred cccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCC
Q 001168 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1134)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 755 (1134)
T Consensus 254 -------------------------------------------------------------------------------- 253 (340)
T 4aow_A 254 -------------------------------------------------------------------------------- 253 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCC
Q 001168 756 SDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1134)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 835 (1134)
.
T Consensus 254 ------------------------------------------------------------------------------~- 254 (340)
T 4aow_A 254 ------------------------------------------------------------------------------D- 254 (340)
T ss_dssp ------------------------------------------------------------------------------E-
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEe---------cCCCCceEEEEEcCCCCcEEEEEeCCCcE
Q 001168 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF---------MSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~---------~~~~~~i~~l~~s~~~~~~lasg~~dg~i 906 (1134)
+ ...+.+++|+|++.+++++.|+.|++||++++..+..+ .+|...|++++|+| ++++||+|+.||.|
T Consensus 255 --~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 255 --G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLV 330 (340)
T ss_dssp --C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEE
Confidence 1 34566777777777666666778888887776665554 35888999999999 89999999999999
Q ss_pred EEEEcCCce
Q 001168 907 QIYNVRVDE 915 (1134)
Q Consensus 907 ~iwd~~~~~ 915 (1134)
+|||+.+|+
T Consensus 331 ~iW~~~tGt 339 (340)
T 4aow_A 331 RVWQVTIGT 339 (340)
T ss_dssp EEEEEEC--
T ss_pred EEEeCCCcC
Confidence 999999885
No 62
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6e-34 Score=327.51 Aligned_cols=300 Identities=12% Similarity=0.134 Sum_probs=253.9
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEe
Confidence 344555 999999999999 4 7889999999999999987621110 0011256899999999999
Q ss_pred CC----C---CEEEEEeCCCeEEEEEcCCCCccc--ceeEeecc-----cCCeeEEEEe----cCCCcEE-EEEEcCCCc
Q 001168 418 PD----G---LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGDDKM 478 (1134)
Q Consensus 418 pd----g---~~las~~~dg~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~l~~s----~d~~~~~-l~sg~~d~~ 478 (1134)
|+ | ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ + |++++.|+.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~ 149 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGT 149 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSC
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCc
Confidence 99 9 999999999999999999877510 02366778 5899999999 9998 8 999999999
Q ss_pred EEEEECCC------CeeeE-----Ee-------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-
Q 001168 479 IKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA- 539 (1134)
Q Consensus 479 i~iwd~~~------~~~~~-----~~-------~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~- 539 (1134)
|++||+.+ ++.+. .+ ..|...|.+++|+|+ + ++++++.|+.|++||+++.+....+..
T Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 226 (397)
T 1sq9_A 150 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNFESQ 226 (397)
T ss_dssp EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEEecc
Confidence 99999998 77766 77 448999999999874 4 999999999999999999888888888
Q ss_pred --C---CCcEEEEEECCCCCEEEEEeeCCCCC---CcEEEEeCCCCeeEEEecC-------------ccCcceEEEEEeC
Q 001168 540 --P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQFDT 598 (1134)
Q Consensus 540 --~---~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~ 598 (1134)
| ...|.+++|+|++++|++++. + +.|++||+++++.+..+.+ |.. .|.+++|+|
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 301 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFND 301 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECS
T ss_pred ccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECC
Confidence 8 889999999999999999885 5 7899999999999999988 666 899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEEEe------CC-------------CCCCCcceEEEccCC----------CEEEE
Q 001168 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SLLAV 649 (1134)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~d~----------~~l~~ 649 (1134)
++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 99999999999999999999999999998 44 014589999999998 79999
Q ss_pred EeCCCcEEEEECCCc
Q 001168 650 TTSDNGIKILANSDG 664 (1134)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1134)
++.||.|++|++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999999876
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=310.16 Aligned_cols=289 Identities=16% Similarity=0.260 Sum_probs=252.7
Q ss_pred cceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001168 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
+.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~ 65 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSV 65 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEE
Confidence 346677777 9999999999 8998 688999999999999988765543 55789999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001168 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
+|+|++++|++++.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+.
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99999999999999999999999877555555578899999999999 456 799999999999999 788888999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001168 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
.|...|.++++.+. ++.++++++.|+.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||
T Consensus 140 ~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d 211 (313)
T 3odt_A 140 AHNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVD 211 (313)
T ss_dssp CCSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEE
T ss_pred cCCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEE
Confidence 99999999999873 237999999999999999 3445556665 788999999999998 777764 78899999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001168 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+++++.+..+.+|.. .|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..|.+++|+|+++ +++++.|
T Consensus 212 ~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 212 MHTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp TTTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEETT
T ss_pred CCchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeCC
Confidence 999999999998887 89999999999 68899999999999999999999998764 4799999999998 5679999
Q ss_pred CcEEEEECCCc
Q 001168 654 NGIKILANSDG 664 (1134)
Q Consensus 654 g~i~iw~~~~~ 664 (1134)
|.|++|++.++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999887
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-32 Score=322.78 Aligned_cols=282 Identities=16% Similarity=0.257 Sum_probs=245.4
Q ss_pred EEEec-CCCC-eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 340 VRTLN-QGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 340 ~~~l~-h~~~-V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
...+. |.+. +.++.|+ ++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~ 171 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYA 171 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEEC
T ss_pred eEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEc
Confidence 34444 7666 4666664 55 789999999999999999887654 67899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCee------
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~------ 489 (1134)
|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|+.|++||+.++..
T Consensus 172 ~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 172 HGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp STT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC-----
T ss_pred CCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccc
Confidence 998 99999999999999999987554 7789999999999995 555 899999999999999987653
Q ss_pred -----------------eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC
Q 001168 490 -----------------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 490 -----------------~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
+..+.+|...|.++.. + +.++++++.|+.|++||+.+.+....+..|...|.+++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEcC--C--CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 4567889999998853 3 379999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001168 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1134)
++++++++. ++.|++||+++++.+..+.+|.. .|.+++|+ ++++++++.||.|++||+.++.........
T Consensus 322 ~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--- 391 (464)
T 3v7d_B 322 RKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT--- 391 (464)
T ss_dssp TTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---
T ss_pred CCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---
Confidence 999999985 78899999999999999999887 89999997 579999999999999999998877666432
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+..++|++++.++++++ ||.|++||+.++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3567889999999999998 899999999887
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-32 Score=324.29 Aligned_cols=345 Identities=16% Similarity=0.195 Sum_probs=267.4
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001168 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+..|. ..|.+++|++++ ++++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3556788888755677666 46799999999999999999999999998664 589999999988 999999999999
Q ss_pred EEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcc
Q 001168 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
+||+.++ +....+.
T Consensus 187 vwd~~~~-~~~~~~~----------------------------------------------------------------- 200 (464)
T 3v7d_B 187 VWDIKKG-CCTHVFE----------------------------------------------------------------- 200 (464)
T ss_dssp EEETTTT-EEEEEEC-----------------------------------------------------------------
T ss_pred EEECCCC-cEEEEEC-----------------------------------------------------------------
Confidence 9999877 2222221
Q ss_pred cccccccccccccccCCCCCccceeEEecCCcccccceEEEEEe--cCCcceeeeeccceEEEeecccccCCCCCCcccc
Q 001168 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT--NSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 815 (1134)
+|...|.+++|+ +++.++++++.||.|++||+..............
T Consensus 201 --------------------------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 201 --------------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp --------------------------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred --------------------------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 156778888888 5788999999999999999876543222111111
Q ss_pred cCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCC
Q 001168 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 816 ~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
.....+...........+.+ | ...+.++ ++++.++++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~--~-~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~ 322 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRG--H-MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ER 322 (464)
T ss_dssp SSEEESCGGGCTTEEEEECC--C-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TT
T ss_pred cceEeeccCCCeEEEEEccC--c-cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CC
Confidence 11111111111111122333 6 7777766 68899999999 99999999999999999999999999999999 89
Q ss_pred cEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001168 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1134)
++|++|+.||.|++||+.+++++..+.+|...|.+++|+ +.+|++++.|++|++||+.+++.... ....
T Consensus 323 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~----~~~~----- 391 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS----YHHT----- 391 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE----EECT-----
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee----ecCC-----
Confidence 999999999999999999999999999999999999997 58999999999999999998763221 1111
Q ss_pred cCceEEEEcCCCcEEEEEECCeEEEEeC-CCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001168 975 VGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
..+..++|+|+++++++++|+.|++||+ +++.+.... ..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 392 ~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~--~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI--LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCT--TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhh--ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 3467889999999999988999999999 666655433 3458999999997 445566666777665554
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-34 Score=324.40 Aligned_cols=290 Identities=17% Similarity=0.271 Sum_probs=245.0
Q ss_pred CCCCeeEEEEecC---CCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC--
Q 001168 345 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1134)
Q Consensus 345 h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-- 419 (1134)
|.++|++++|+|+ +..++++++.++.|+|||+.+++.+... .......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------QSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------EEEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------eeccccCCCCcEEEEEeccCCC
Confidence 8999999999985 4445666666889999999987765321 11112247788999999999
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeeeEEe---
Q 001168 420 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1134)
Q Consensus 420 --g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--- 493 (1134)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999887655 6778999999999999 777 8999999999999999999999888
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe----------------------------cCCCCcEE
Q 001168 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY----------------------------DAPGNWCT 545 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----------------------------~~~~~~v~ 545 (1134)
.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+ ..+...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999998854 89999999999999999876543322 23788999
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--------------EEEecCccCcceEEEEEeCC--CCEEEEEeCC
Q 001168 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--------------KRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 609 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 609 (1134)
+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778888874 88899999987643 777888776 7999999999 9999999999
Q ss_pred CeEEEEECCCCe----eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001168 610 FQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 610 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999876 34467766556789999999999999999999999999985
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-33 Score=322.27 Aligned_cols=294 Identities=13% Similarity=0.109 Sum_probs=248.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc--ccccccceeeccccccccccccccccCCcCeEEEEECCCCCE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
|.++|++++|+|+|+ ++++|+.||.|++||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 788999999999998 78889999999999999875 3332 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee---e-EEecCCCC
Q 001168 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---Q-YTFEGHEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~---~-~~~~~h~~ 498 (1134)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998875332 224467999999999999999 899999999999999988763 2 33467899
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcc------------------CCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001168 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.|.+++|+|++ .+|++++.|+.|++||+. ..+....+..+...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999998854 899999999999999954 4566677778889999999999999999997
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC--CeeE---------------
Q 001168 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 623 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 623 (1134)
. ++.|++||+++++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 4 78899999999999999998876 89999999999877777 899999999987 4310
Q ss_pred -----------------------EEEeCCCCCCCcceEEEc-cCC---CEEEEEeCCCcEEEEECCCchhhhhh
Q 001168 624 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLRM 670 (1134)
Q Consensus 624 -----------------------~~~~~~~~~~~v~~~~~s-~d~---~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1134)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++.++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~~ 368 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 368 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhhh
Confidence 1111 2445689999966 677 99999999999999999887555443
No 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=319.47 Aligned_cols=289 Identities=15% Similarity=0.208 Sum_probs=242.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeC---CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC--
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-- 419 (1134)
|.+.|++++|+|+++.++++|+. ||.|+|||+.+++..... ..+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEEcCCCC
Confidence 99999999999999878888887 999999999987754321 2368999999999999
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCC-cccceeEeecccCCeeEEEE------ecCCCcEEEEEEcCCCcEEEEECCCCe-ee
Q 001168 420 -GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAF------AHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ 490 (1134)
Q Consensus 420 -g~~las~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~------s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~ 490 (1134)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999886 443 67899999999965 67888 89999999999999999987 67
Q ss_pred EEecCCCC----CeEEEEeec--cCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC---CCCEEEEEee
Q 001168 491 YTFEGHEA----PVYSVCPHH--KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRLFSCGT 561 (1134)
Q Consensus 491 ~~~~~h~~----~v~~i~~~~--~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~ 561 (1134)
..+..|.+ .|.+++|.+ ..++.++++++.|+.|++||+++.+... ...+...|.+++|+| +++++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 78876655 899988422 2345899999999999999999877644 355678999999999 9999999874
Q ss_pred CCCCCCcEEEEeCCCCeeEEEec-----CccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCC---------------
Q 001168 562 SKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM--------------- 620 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------- 620 (1134)
++.|++||+++++....+. +|.. .|.+++|+|+++ ++++++.||.|++||+..+
T Consensus 233 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 233 ----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp ----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred ----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 7889999999877665554 7766 899999999998 7999999999999999754
Q ss_pred ----eeEEEEeCCCCCCCcceEEEccCCCEEE-EEeCCCcEEEEECCCc
Q 001168 621 ----NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1134)
Q Consensus 621 ----~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iw~~~~~ 664 (1134)
+.+..+..| ...|.+++|+|++++|+ +++.||.|++||+.+.
T Consensus 308 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 345556655 45899999999999998 7999999999999875
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5e-34 Score=331.35 Aligned_cols=292 Identities=16% Similarity=0.212 Sum_probs=234.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC-CCCEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~l 423 (1134)
|...|+|++|+|.+..+||+|+.||.|+|||+.+++..... .+.+|.+.|++++|+| ++++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTTEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCCEE
Confidence 77899999999966558999999999999999877643210 1468999999999998 78999
Q ss_pred EEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001168 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.|+.|++||+. ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 999999999999998643 222112223445688999999999 89999999999999975 56778899999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
+|+|.++ .++++++.|++|++||+++.+... ....|...|++++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9998753 589999999999999998766543 33567889999999999999999985 788999999999888
Q ss_pred EEecCccCc-----ceEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCcceE-EEcc
Q 001168 581 RTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL-RFNK 642 (1134)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~ 642 (1134)
..+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 777665421 123456777777776654 34679999999999988875432 3467776 6999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001168 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|.+|++|+ |+.|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 789999999887
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.3e-33 Score=319.35 Aligned_cols=315 Identities=15% Similarity=0.205 Sum_probs=252.4
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEE
Q 001168 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~ 648 (1134)
+|+....+....+.+|.. .|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 445566777788888887 89999999999 999999999999999999998888887655667899999999 789999
Q ss_pred EEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCC
Q 001168 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1134)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1134)
+++.|+.|++||+.+. . ...+..
T Consensus 136 s~~~d~~i~iwd~~~~-~-~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-V-IQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC-E-EEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC-c-eEEEec-------------------------------------------------------
Confidence 9999999999998632 0 000000
Q ss_pred CCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCC
Q 001168 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1134)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~ 808 (1134)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEE
Q 001168 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 887 (1134)
Q Consensus 809 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 887 (1134)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.++
T Consensus 159 ------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 159 ------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp ------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred ------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 0 003 67799999999999999999 899999999 578889999999999999
Q ss_pred EEcCCCCc-EEEEEeCCCcEEEEEcCC----ceEEEEecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccc
Q 001168 888 AFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 888 ~~s~~~~~-~lasg~~dg~i~iwd~~~----~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
+|+| +++ +|++|+.|+.|++||+.+ ++++..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++....
T Consensus 211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999 777 999999999999999998 6677666 6999999999999 999999999999999999998875432
Q ss_pred eeeecC--CCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001168 962 RFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 962 ~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg 1039 (1134)
...... ..+. ..+. +.|+|+ ..+..++|+|||++ +++.||
T Consensus 289 ~~~~~~~~~~~~---~~~~-~~~~p~--------------------------------~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 289 IIIHPHRQFQHL---TPIK-ATWHPM--------------------------------YDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEECCBCCCTTS---CCCC-CEECSS--------------------------------SSEEEEECBCCTTT--CTTCCC
T ss_pred cccccccccccc---cceE-EeccCC--------------------------------CCceEEEecCCccc--ccCCCC
Confidence 221110 0111 1111 244443 34566788999998 899999
Q ss_pred cEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001168 1040 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1040 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.|++||+.+++.+..+..+. +.....+++|+| ++++|++|+ ||.|++|++.+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~--------~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPN--------AAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBTT--------BCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCCC--------CCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 99999999999998886431 223334569999 789999997 99999999875
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.2e-33 Score=316.48 Aligned_cols=300 Identities=11% Similarity=0.097 Sum_probs=231.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCC-------CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
.-+|+|++|+|||+ +||+|+.| +.|++|++..+.......+. ......+.+|...|.+++++
T Consensus 14 g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~- 82 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS- 82 (365)
T ss_dssp SSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE-
T ss_pred CCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC-
Confidence 45899999999997 78888643 35999999876543211110 01112367788899988774
Q ss_pred CCCEEEEE-----------eCCCeEEEEEcCCCCcccc-eeE-----eecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001168 419 DGLMLGVA-----------FSKHIVHLYTYNPTGELRQ-HLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 419 dg~~las~-----------~~dg~i~iwd~~~~~~~~~-~~~-----~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
++.+++| +.|+.+++|++.+...... ... ...+...+.+++|+|||+.+.+++++.|++|+|
T Consensus 83 -~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 83 -KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp -TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred -CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 5566665 3577899999876543211 111 123455689999999999644567778999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE--ecCCCCcEEEEEECCCCCEEEEE
Q 001168 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
||+.+++++..+. |.+.|.+++|+|++ .++++++.+ .+++|+..+++.... ...+...|.+++|+|++++++++
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 9999999998886 78889999998854 899988855 566677666665543 34567789999999999999999
Q ss_pred eeCCCCCCcEEEEeCCCCee----EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCC
Q 001168 560 GTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPA 634 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 634 (1134)
+.++.....+++|+...+.. ...+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++++..+ .+| ...
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~ 314 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFA 314 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSC
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCC
Confidence 87655455788999876653 345667766 8999999999999999999999999999999998876 455 458
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|++++|+|||++||+++.|++|+||++..+
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999765
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8e-33 Score=318.08 Aligned_cols=298 Identities=14% Similarity=0.151 Sum_probs=251.0
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC------ceeEecCCCCcEEEEEECCC----C---CEE
Q 001168 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TRL 556 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l 556 (1134)
...+.+|.+.|++++|+| .+|++++.||.|++||+.+.+ ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999976 699999999999999999887 67788899999999999999 9 999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCee-----EEEecCcc----CcceEEEEEe----CCCCE-EEEEeCCCeEEEEECCC---
Q 001168 557 FSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN--- 619 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~--- 619 (1134)
++++. ++.|++||+.+++. +..+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99875 78899999998887 88888884 3389999999 99999 99999999999999998
Q ss_pred ---CeeEE-----EEeC-----CCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCC
Q 001168 620 ---MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1134)
Q Consensus 620 ---~~~~~-----~~~~-----~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1134)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~------------ 226 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ------------ 226 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc------------
Confidence 66665 6644 3445689999999999 9999999999999998755 111110000
Q ss_pred CCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEec
Q 001168 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1134)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1134)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEE
Q 001168 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1134)
Q Consensus 767 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~ 846 (1134)
..| .. . ...|.++
T Consensus 227 --~~h-------------------------------------------------------------~~---~-~~~i~~i 239 (397)
T 1sq9_A 227 --HSM-------------------------------------------------------------IN---N-SNSIRSV 239 (397)
T ss_dssp --C----------------------------------------------------------------C---C-CCCEEEE
T ss_pred --ccc-------------------------------------------------------------cc---c-CCccceE
Confidence 000 00 1 4568888
Q ss_pred EeccCCCEEEEEe-C---CeEEEEEcCCCeEEEEecC-------------CCCceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001168 847 ALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1134)
Q Consensus 847 ~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~~lasg~~dg~i~iw 909 (1134)
+|+|++++|++++ | |.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|++|
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 9999999999888 7 8999999999999888888 999999999999 89999999999999999
Q ss_pred EcCCceEEEEec------Cc---------------ccceEEEEEecCC----------CEEEEEcCCCcEEEEeCCCcc
Q 001168 910 NVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 910 d~~~~~~~~~l~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
|+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|++.+++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999999999999 88 9999999999998 799999999999999998763
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=309.03 Aligned_cols=302 Identities=13% Similarity=0.146 Sum_probs=250.5
Q ss_pred ccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001168 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
.+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987665 7789999999999999999 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCc-----------eeEecCCCC--cE
Q 001168 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--WC 544 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~-----------~~~~~~~~~--~v 544 (1134)
|+.+++.+..+. |...|.+++|+|++ .++++++.+ +.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999998887 88999999998865 899999999 9999999987643 233444444 89
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001168 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
.+++|+|+++++++++. ++.|++||+++ ++.+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999874 78899999998 788889988877 8999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccc
Q 001168 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1134)
..+.. ...+.+++|+|+++++++++.++...+|......
T Consensus 254 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEEC---SSCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 88873 3468999999999999999999865555432220
Q ss_pred cccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecC
Q 001168 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1134)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 783 (1134)
....+++|+....... ..+ .+|...|.+++|+|+
T Consensus 293 ---------------------------------------~~~~i~~~d~~~~~~~---~~~----~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 293 ---------------------------------------GKFEARFYHKIFEEEI---GRV----QGHFGPLNTVAISPQ 326 (369)
T ss_dssp -----------------------------------------CEEEEEETTTCCEE---EEE----ECCSSCEEEEEECTT
T ss_pred ---------------------------------------CcceeEEEecCCCcch---hhe----ecccCcEEEEEECCC
Confidence 0124555555542211 111 237788999999999
Q ss_pred CcceeeeeccceEEEeecccc
Q 001168 784 GLSLLALASNAVHKLWKWQRT 804 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~ 804 (1134)
+++|++++.||.|++|++...
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp SSEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEcCCCeEEEEECccc
Confidence 999999999999999998653
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-34 Score=327.25 Aligned_cols=286 Identities=13% Similarity=0.125 Sum_probs=226.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeeccccccccccccccccCCcCeEEEEECCCCCE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.++|++++|+|+|+ +|++|+.||.|+|||+.++ +.+.. +.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7889999999999999987 44332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe---eeEEecC-CCC
Q 001168 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~---~~~~~~~-h~~ 498 (1134)
|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873444446778999999999999999 79999999999999999887 4678888 999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccC------------------CCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001168 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.|.+++|+|++ .+|++++.|+.|++||+.. .+....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999998854 8999999999999999853 2233344 7888999999999999999997
Q ss_pred eCCCCCCcEEEEeCCCCee----EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---------------
Q 001168 561 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 621 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1134)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 4 78899999999887 788888877 89999999999999888877766 66554211
Q ss_pred ------------------------eEEEEeC-----------CCCCCCcceEEEccC-CC---EEEEEeCCCcEEEEEC
Q 001168 622 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 661 (1134)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~d-~~---~l~~~~~dg~i~iw~~ 661 (1134)
....... ..|...|.++++.++ +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014567889987653 33 6999999999999985
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-32 Score=313.35 Aligned_cols=287 Identities=16% Similarity=0.251 Sum_probs=240.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.+.+++|++ ..+ ++++.||.|++||+.+++.... ....|...|.+++|+|++++|++|+
T Consensus 95 ~~~~~~~s~--~~l-~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 95 YLNLLDWSN--LNV-VAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp TCBCEEECT--TSE-EEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeecC--CCE-EEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCEEEEEC
Confidence 355566665 334 4567899999999999876542 1223889999999999999999999
Q ss_pred CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeeeEEecCCCCCeEEEEee
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+. .+..+..+.+|.+.|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999987665 777999999999994 45 89999999999999998 567788899999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001168 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
|+ +.+|++++.|+.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 SD--GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp TT--SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred CC--CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 85 489999999999999999998888888899999999999998866555431 124788999999999999888744
Q ss_pred cCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 587 RKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
. .+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|++|++.++
T Consensus 304 ~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 304 S--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp S--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred C--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3 799999999999999954 899999999999776666543444568999999999999999999999999999988
Q ss_pred hhh
Q 001168 665 VRL 667 (1134)
Q Consensus 665 ~~~ 667 (1134)
...
T Consensus 382 ~~~ 384 (401)
T 4aez_A 382 DHV 384 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 433
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5e-33 Score=321.15 Aligned_cols=348 Identities=14% Similarity=0.164 Sum_probs=242.2
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeC-----------CCCCCC
Q 001168 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPA 634 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 634 (1134)
..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 4477888888888888888887 999999999 999999999999999999998765544431 124568
Q ss_pred cceEEEcc-CCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCC
Q 001168 635 SPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1134)
Q Consensus 635 v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1134)
|.+++|+| ++.+|++++.||.|++||+.++. ....+
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~------------------------------------------ 138 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADVF------------------------------------------ 138 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTE-EEEEE------------------------------------------
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-cceec------------------------------------------
Confidence 99999999 78899999999999999987651 00000
Q ss_pred CCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeecc
Q 001168 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 793 (1134)
T Consensus 139 -------------------------------------------------------------------------------- 138 (408)
T 4a11_B 139 -------------------------------------------------------------------------------- 138 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc---CCCEEEEEe-CCeEEEEEcC
Q 001168 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMM 869 (1134)
Q Consensus 794 g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~---dg~~la~~s-dg~i~vwd~~ 869 (1134)
. + ...+.++++++ ++.++++++ +|.|++||+.
T Consensus 139 ------~-------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 139 ------N-------------------------------------F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp ------E-------------------------------------C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ------c-------------------------------------C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 0 1 34455666666 455888888 8999999999
Q ss_pred CCeEEEEecCCCCceEEEEEcCCCCc-EEEEEeCCCcEEEEEcCCce-EEEEe---------------cCcccceEEEEE
Q 001168 870 TFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVDE-VKTKL---------------KGHQNRITGLAF 932 (1134)
Q Consensus 870 ~~~~~~~~~~~~~~i~~l~~s~~~~~-~lasg~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~i~~l~~ 932 (1134)
+++.+..+.+|...|++++|+| +++ +|++|+.||.|++||+.+++ .+..+ .+|...|.+++|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 9999999999999999999999 666 69999999999999998765 34444 578999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeC-CCccccccC
Q 001168 933 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWS 1011 (1134)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~ 1011 (1134)
+|++++|++++.|+.|++||+.+++.............. ......+.....+.+++++.++.|++||+ ++..+..+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 999999999999999999999998753322111111111 01222333344556666689999999999 66666555
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCC
Q 001168 1012 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD 1091 (1134)
Q Consensus 1012 ~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~D 1091 (1134)
.+|...|++++|+||+++|++++.||.|++||+.+++.+....... ....+.+.....+.+.+.|
T Consensus 331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 395 (408)
T 4a11_B 331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEE 395 (408)
T ss_dssp --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCcc
Confidence 4568999999999999999999999999999999998876554221 1122333344567778889
Q ss_pred CcEEEEecCC
Q 001168 1092 GAVHVVEPSD 1101 (1134)
Q Consensus 1092 g~v~vW~~~~ 1101 (1134)
+.+++|+...
T Consensus 396 ~~~~~W~~~~ 405 (408)
T 4a11_B 396 GGTSAWSHPQ 405 (408)
T ss_dssp ----------
T ss_pred CceeecCCcc
Confidence 9999998754
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-32 Score=299.68 Aligned_cols=251 Identities=18% Similarity=0.265 Sum_probs=213.8
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~i 481 (1134)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975321 223478899999999999864 77 8999999999999
Q ss_pred EECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCC-----
Q 001168 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 552 (1134)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 552 (1134)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999999975568999999999999999987642 4567788899999999997
Q ss_pred --------CCEEEEEeeCCCCCCcEEEEeCCCCe----eEEEecCccCcceEEEEEeCCC---CEEEEEeCCCeEEEEEC
Q 001168 553 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~ 617 (1134)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 568999875 7889999998765 6678888887 89999999985 78999999999999999
Q ss_pred CCCe--e-EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001168 618 DNMN--M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 618 ~~~~--~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.. . ...+....+...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 1 2222223445679999999999999999999999999975
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.9e-32 Score=333.47 Aligned_cols=208 Identities=22% Similarity=0.306 Sum_probs=183.2
Q ss_pred eEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCC
Q 001168 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~ 521 (1134)
..+.+|.+.|++++|++++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++++ .+|++|+.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--SEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--CEEEEEeCCC
Confidence 367899999999999998654 8999999999999998753 4567889999999999998754 8999999999
Q ss_pred eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe---cCccCcceEEEEEeC
Q 001168 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY---SGFRKRSLGVVQFDT 598 (1134)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~~~~v~~~~~~~ 598 (1134)
+|++||+.++.....+..|...|.+++|+|++++|++++. |++|++||.......... .+|.. .|.+++|+|
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~ 527 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSP 527 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeC
Confidence 9999999999888899999999999999999999999985 788999998765443332 34554 799999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 599 TR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 599 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++ ..+++++.|+.|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 87 689999999999999999999998888764 47999999999999999999999999998766
No 79
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-33 Score=311.90 Aligned_cols=314 Identities=11% Similarity=0.049 Sum_probs=243.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence 46899999999998 799999999999 6444432 35799999999999999
Q ss_pred EeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC-----Ce
Q 001168 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----PV 500 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-----~v 500 (1134)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .||+++.||.|++||.+. ++..+. |.. .|
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 4555555554432222 22 4688999999999999 899999999999999544 667777 766 49
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCc-------eeEe----cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001168 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+++|+|++ ++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSPDG--~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNPIE--SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECSSS--SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcCCC--CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 999998855 9999999999999999998753 3444 5677899999999999 666653 7889
Q ss_pred EEEeCCCCee---EEEec-CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--ccC
Q 001168 570 VEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKE 643 (1134)
Q Consensus 570 ~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~d 643 (1134)
++||+.++.. .+++. +|.. .|.+++|+ |+.+++++ ++.|++||+.+++......+ +...+..++| +||
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCC
Confidence 9999988773 35664 5554 89999999 68899887 69999999998877544434 4568999999 999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccC
Q 001168 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
+..+++++.+|+ ++|....-
T Consensus 279 ~~~La~a~edG~-klw~~d~~----------------------------------------------------------- 298 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLEDEL----------------------------------------------------------- 298 (588)
T ss_dssp CEEEEECSSCEE-EEEESSSE-----------------------------------------------------------
T ss_pred CCEEEEEcCCCC-EEEeeccE-----------------------------------------------------------
Confidence 999999999999 99987611
Q ss_pred ccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeec
Q 001168 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 792 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 792 (1134)
.+.+++..++. .|+++++|+...... . . -.+...|.+++|||||+.+++++.
T Consensus 299 -------~~spd~~l~a~-~d~~v~lW~~~g~~l----~---~--~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 299 -------HVTADNIIAPY-LEKKFKKWSTIWNEF----N---N--YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -------EEECCCSSHHH-HHHHHHHTTTTTTSS----S---S--SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred -------EECCCceEEEE-cCCEEEEEECCCCce----e---e--eccceEEEEEEECCCCCEEEEEEe
Confidence 12334444444 489999999854321 1 1 113566899999999998887764
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-32 Score=310.12 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=213.2
Q ss_pred ccccCCcCeEEEEECCC----CCEEEEEeCCCeEEEEEcCCCCcccceeEee--cccCCeeEEEEecC----CCcEEEEE
Q 001168 403 LLNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHP----NKQLCIVT 472 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d----~~~~~l~s 472 (1134)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 35689999999999984 4567777777799999999877665433332 26688999999999 55 8999
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCCCCcEEEEEE
Q 001168 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAY 549 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1134)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999883 3389999999999999999988887777 678899999999
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC----------------------------ccCcceEEEEEeCCCC
Q 001168 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG----------------------------FRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~ 601 (1134)
+|+++++++++. ++.|++||+++++....+.. |.. .|.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 999999999985 78899999998765544433 555 89999999 77
Q ss_pred EEEEEeCCCeEEEEECCCCee--------------EEEEeCCCCCCCcceEEEccC--CCEEEEEeCCCcEEEEECCCc
Q 001168 602 RFLAAGDEFQIKFWDMDNMNM--------------LTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++++.|+.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999987644 6666655 347999999999 999999999999999999877
No 81
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-33 Score=323.69 Aligned_cols=300 Identities=16% Similarity=0.205 Sum_probs=227.6
Q ss_pred EEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001168 581 RTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
.....|.. .|++++|+| +++.|++|+.||.|++||+.+++....+...+|...|.+++|+| ++.+|++++.||+|++
T Consensus 113 ~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 33444555 799999999 45789999999999999999887777776666677999999998 7899999999999999
Q ss_pred EECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCccc
Q 001168 659 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 738 (1134)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1134)
||+.++. . ..+
T Consensus 192 wd~~~~~-~-~~~------------------------------------------------------------------- 202 (435)
T 4e54_B 192 QDFKGNI-L-RVF------------------------------------------------------------------- 202 (435)
T ss_dssp EETTSCE-E-EEE-------------------------------------------------------------------
T ss_pred eeccCCc-e-eEE-------------------------------------------------------------------
Confidence 9986430 0 000
Q ss_pred ccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCc
Q 001168 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1134)
Q Consensus 739 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 818 (1134)
...
T Consensus 203 -----------------------------------------~~~------------------------------------ 205 (435)
T 4e54_B 203 -----------------------------------------ASS------------------------------------ 205 (435)
T ss_dssp -----------------------------------------ECC------------------------------------
T ss_pred -----------------------------------------ecc------------------------------------
Confidence 000
Q ss_pred ccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEE
Q 001168 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897 (1134)
Q Consensus 819 ~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 897 (1134)
..+ ...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+|
T Consensus 206 -----------------~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 206 -----------------DTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp -----------------SSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred -----------------CCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence 002 44567789999999999998 8999999986 456678889999999999999555689
Q ss_pred EEEeCCCcEEEEEcCCceEEEE---ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001168 898 AIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1134)
Q Consensus 898 asg~~dg~i~iwd~~~~~~~~~---l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1134)
++|+.|+.|+|||+.+++.... ..+|...|++++|+||+++|++++.|++|++||+.+++........... ....
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~--~~~~ 344 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR--HFQH 344 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--CCSS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--cccc
Confidence 9999999999999988764433 4679999999999999999999999999999999988754332211110 0001
Q ss_pred cCceEEEEcCCCcEEEEE-------------ECCeEEEEeC-CCccccccCCCCCCCCCeEEE-EEccCCCEEEEEecCC
Q 001168 975 VGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~-------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v-~~s~dg~~l~~~~~dg 1039 (1134)
..+..+.|+|++..++++ .++.|++||. +++.+..+. .+|...|.++ +|+|||++|++|+ |+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--DPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--CSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--CCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 223455677777666664 2357999999 666665543 3457888887 6999999999876 88
Q ss_pred cEEEEeCCCcce
Q 001168 1040 AIGVFDAETLRF 1051 (1134)
Q Consensus 1040 ~I~vwd~~~~~~ 1051 (1134)
.|+||++++|+.
T Consensus 422 ~i~iW~~~~gk~ 433 (435)
T 4e54_B 422 HILIWSQQEART 433 (435)
T ss_dssp EEEECCCC----
T ss_pred cEEEEECCcCee
Confidence 999999998864
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-31 Score=309.65 Aligned_cols=282 Identities=15% Similarity=0.256 Sum_probs=242.6
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.++.|+||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++++|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 57789999875 678776 999999999999865421 1457888999999999999999999
Q ss_pred CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCCCCCeEEEEee
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~ 506 (1134)
.||.|++||+.+++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.++
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 778999999988875 45 8999999999999998864 4567889999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCCCCEEE-EEeeCCCCCCcEEEEeCCCCeeEE
Q 001168 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
+.+ .++++++.|+.+++|+....+. ......+...|.+++|+|++..++ +++. ..|+.|++||+.+++...
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 765 8999999999999999987653 346677888999999999776554 4432 347899999999999999
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001168 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|||++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 988765 688899999999998865 79999999999999999998764 489999999999999999999999999
Q ss_pred ECCCc
Q 001168 660 ANSDG 664 (1134)
Q Consensus 660 ~~~~~ 664 (1134)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=317.83 Aligned_cols=319 Identities=10% Similarity=0.117 Sum_probs=251.1
Q ss_pred ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001168 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 452 h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
....|.+++|+|||+ ++||++.|++|+ |...++.+ .+|...|.+++|+|++ .++.+.+|+ .
T Consensus 14 ~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~---~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFEL---A 74 (588)
T ss_dssp CSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSC---C
T ss_pred hhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEe---C
Confidence 457899999999999 899999999999 76666544 7999999999998854 455544444 4
Q ss_pred CceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC----cceEEEEEeCCCCEEEEE
Q 001168 532 GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 532 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~ 606 (1134)
+....+. .+...|.+++|||+|++|++++. ++.+++||... ++..+. |.. ..+.+++|+|||++|++|
T Consensus 75 ~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~----dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 75 QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN----NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp CSSCSSTTSCSCCEEEEEECSSSSCEEEEET----TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred CCceEeecCCCCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 4333333 34778999999999999999985 78899999544 666666 553 259999999999999999
Q ss_pred eCCCeEEEEECCCCee-------EEEEeCC--CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccc
Q 001168 607 GDEFQIKFWDMDNMNM-------LTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~~-------~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 677 (1134)
+.||+|++||+.++.. +.++..+ ++...|.+++|+||| +++++.|++|++|++.++.. . .
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-~-~------- 216 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-Q-P------- 216 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-C-C-------
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-c-c-------
Confidence 9999999999998753 5666322 345689999999999 88889999999999866510 0 0
Q ss_pred cCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCC
Q 001168 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1134)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~ 757 (1134)
T Consensus 217 -------------------------------------------------------------------------------- 216 (588)
T 2j04_A 217 -------------------------------------------------------------------------------- 216 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCcccccc-CCC
Q 001168 758 PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI-NES 836 (1134)
Q Consensus 758 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~ 836 (1134)
..+. + .+
T Consensus 217 --~~~t---------------------------------------------------------------------L~~~- 224 (588)
T 2j04_A 217 --VSRM---------------------------------------------------------------------IQNA- 224 (588)
T ss_dssp --CEEE---------------------------------------------------------------------EECC-
T ss_pred --ceee---------------------------------------------------------------------eccc-
Confidence 0000 0 01
Q ss_pred CCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEE--cCCCCcEEEEEeCCCcEEEEEcCCc
Q 001168 837 KPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF--HPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 837 ~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
| ...|.+++|+ |+.||++++++|++||+.+++......+|...|..++| +| ++..|++++.||+ ++|..+
T Consensus 225 -h-~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-- 296 (588)
T 2j04_A 225 -S-RRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-- 296 (588)
T ss_dssp -C-SSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS--
T ss_pred -c-cCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec--
Confidence 4 6778889999 68999999999999999988875555489999999999 99 8999999999999 999987
Q ss_pred eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEE
Q 001168 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1134)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1134)
.++++||+..+++. |+++++|+...+.. ....+ . ..|.+++|||||+.+|++.
T Consensus 297 --------------~~~~spd~~l~a~~--d~~v~lW~~~g~~l------~~~~~-~---~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 --------------ELHVTADNIIAPYL--EKKFKKWSTIWNEF------NNYET-T---LVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------SEEEECCCSSHHHH--HHHHHHTTTTTTSS------SSSCC-E---EEEEEEEECTTSSEEEEEE
T ss_pred --------------cEEECCCceEEEEc--CCEEEEEECCCCce------eeecc-c---eEEEEEEECCCCCEEEEEE
Confidence 26699999988775 99999999866541 12222 1 4689999999999999854
No 84
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.1e-32 Score=306.06 Aligned_cols=294 Identities=12% Similarity=0.137 Sum_probs=214.7
Q ss_pred cCCeeEEEEecCCCcEEEEEEcCCC-------cEEEEECCCCee----------eEEecCCCCCeEEEEeeccCCccEEE
Q 001168 453 VGGVNDIAFAHPNKQLCIVTCGDDK-------MIKVWDVVAGRK----------QYTFEGHEAPVYSVCPHHKESIQFIF 515 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1134)
..||++++|+||++ +|++|+.|. .|++|++..+.. ...+.+|...|.++++.. ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~----~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK----GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET----TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC----CEEE
Confidence 45899999999999 899987543 599999876532 124667888888887643 5677
Q ss_pred EEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee----EEEecC----cc
Q 001168 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI----KRTYSG----FR 587 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~----~~ 587 (1134)
+++.++..++|... .++.+++|++.+... ...... ..
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 66554443333211 133344444332211 111110 11
Q ss_pred CcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001168 588 KRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+..+.+++|+|||+++++++ .|++|++||+.+++.+..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 22578899999999987654 7899999999999999888633 369999999999999998865 56666655441
Q ss_pred hhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccc
Q 001168 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1134)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1134)
......
T Consensus 209 ~~~~~~-------------------------------------------------------------------------- 214 (365)
T 4h5i_A 209 CIARKT-------------------------------------------------------------------------- 214 (365)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 100000
Q ss_pred cccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCC
Q 001168 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (1134)
Q Consensus 746 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 825 (1134)
T Consensus 215 -------------------------------------------------------------------------------- 214 (365)
T 4h5i_A 215 -------------------------------------------------------------------------------- 214 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CC----eEEEEEcCCCeE----EEEecCCCCceEEEEEcCCCCcE
Q 001168 826 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG----KVSLFNMMTFKV----MTMFMSPPPAATFLAFHPQDNNI 896 (1134)
Q Consensus 826 ~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~ 896 (1134)
.. .| ...+.+++|+||++++++++ ++ .+++|++..... ...+.+|...|++++||| ++++
T Consensus 215 -------~~--~~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~ 283 (365)
T 4h5i_A 215 -------DF--DK-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGEL 283 (365)
T ss_dssp -------CC--CT-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCE
T ss_pred -------cC--CC-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCc
Confidence 00 04 56677777777777777776 54 477788766543 356778999999999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001168 897 IAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 897 lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
||+|+.|++|+|||+.+++++..+ .+|.+.|++|+|||||++|||+|.|++|+|||+...
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999875 799999999999999999999999999999999653
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.7e-32 Score=294.65 Aligned_cols=246 Identities=14% Similarity=0.213 Sum_probs=206.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeeccccccccccccccccCCcCeEEEEECCC--C
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd--g 420 (1134)
|.+.|++++|+|+|+ +||+|+.||+|+|||+.++ +.+. .+.+|.+.|.+++|+|+ |
T Consensus 8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGGC
T ss_pred CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCcC
Confidence 899999999999998 7899999999999999754 2222 26789999999999874 8
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--eeEEecCC
Q 001168 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH 496 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h 496 (1134)
++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|+.|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999876422 22366789999999999998 77 89999999999999998763 24567899
Q ss_pred CCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEccCCC----ceeEecCCCCcEEEEEECCCC---CEEEE
Q 001168 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---TRLFS 558 (1134)
Q Consensus 497 ~~~v~~i~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~ 558 (1134)
...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+.+|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999999863 24799999999999999998766 345678899999999999995 78888
Q ss_pred EeeCCCCCCcEEEEeCCCCe---eEEEe--cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001168 559 CGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1134)
++. |++|++||++++. ....+ ..+.. .|.+++|+|++++|++++.|+.|++|+..
T Consensus 225 ~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 874 8889999998643 12233 34444 89999999999999999999999999976
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=310.97 Aligned_cols=365 Identities=13% Similarity=0.183 Sum_probs=254.0
Q ss_pred CCCcEEEEECCCCeeeEEecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEccCCCceeEec-------------CC
Q 001168 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------AP 540 (1134)
Q Consensus 475 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------~~ 540 (1134)
.++.+++|++..++....+.+|.+.|.+++|+| ++ .+|++++.||.|++||+.+......+. .|
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 345678899888888889999999999999988 54 899999999999999999876654432 58
Q ss_pred CCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC---CEEEEEeCCCeEEEEE
Q 001168 541 GNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 541 ~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd 616 (1134)
...|.+++|+| ++.++++++. ++.|++||+.+++.+..+... . .+.++.+++.+ .++++++.|+.|++||
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred CCcEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 88999999999 7778888874 788999999999998888743 3 78899999854 4999999999999999
Q ss_pred CCCCeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCccccc
Q 001168 617 MDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 695 (1134)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1134)
+.+++.+..+..+. ..|.+++|+|++. ++++++.||.|++||+.++......+..+......
T Consensus 173 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------------- 235 (408)
T 4a11_B 173 LKSGSCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ--------------- 235 (408)
T ss_dssp SSSSCCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC---------------
T ss_pred CCCcceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce---------------
Confidence 99999998888664 4799999999998 58999999999999998774333333222111000
Q ss_pred CCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccce
Q 001168 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1134)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v 775 (1134)
........|...|
T Consensus 236 -------------------------------------------------------------------~~~~~~~~~~~~v 248 (408)
T 4a11_B 236 -------------------------------------------------------------------AVESANTAHNGKV 248 (408)
T ss_dssp -------------------------------------------------------------------CTTTSSCSCSSCE
T ss_pred -------------------------------------------------------------------eeccccccccCce
Confidence 0000002377889
Q ss_pred EEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE
Q 001168 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 855 (1134)
Q Consensus 776 ~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l 855 (1134)
.+++|+|++++|++++.||.+++||+...+..... .+.... . .. ............+.++
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~~~~----~-~~-~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN--------------YGKVCN----N-SK-KGLKFTVSCGCSSEFV 308 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC--------------CCCCCC----C-CS-SCCCCEECCSSSSCEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceec--------------cccccc----c-cc-ccceeEEecCCCceEE
Confidence 99999999999999999999999998653321100 000000 0 00 1222233334455566
Q ss_pred EEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEec-
Q 001168 856 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP- 934 (1134)
Q Consensus 856 a~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~- 934 (1134)
+++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~ 384 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPA 384 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC----------------------
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccc
Confidence 555699999999999999999999999999999999 8999999999999999999999877665543322 22333
Q ss_pred CCCEEEEEcCCCcEEEEeCCC
Q 001168 935 TLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 935 d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
+...+.+.+.|+.+++|+...
T Consensus 385 ~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 385 FEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------
T ss_pred cceeecccCccCceeecCCcc
Confidence 344566777899999998764
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-31 Score=303.37 Aligned_cols=247 Identities=16% Similarity=0.143 Sum_probs=217.2
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|.++|.+++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 113337789999999999999999 899999999999999
Q ss_pred CCCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCCCCEEE
Q 001168 484 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 484 ~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
+.+++.... +..|...|.+++|++++ .+|++++.|+.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998875543 46799999999998754 8999999999999999998774 223356788999999999999999
Q ss_pred EEeeCCCCCCcEEEEeC------------------CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001168 558 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
+++. ++.|++||+ ..++.+..+..|.. .+.+++|+|++++|++++.|+.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9874 788999995 46788888888877 899999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001168 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999998664 479999999999988877 999999999977
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-31 Score=291.80 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=248.2
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001168 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
.+....+.+|.+.|.+++| +++ .+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677889999999999999 654 79999999999999999988888888889999999999999999999985 7
Q ss_pred CcEEEEeCCCC---eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-
Q 001168 567 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 642 (1134)
Q Consensus 567 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~- 642 (1134)
+.+++|++... +.+..+.+|.. .|.+++| +++++++++.||.|++|| .++....+..+. ..+.+++|+|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~--~~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN--ASVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS--SCEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC--CceeEEEEccC
Confidence 88999998754 56777888877 8999999 578999999999999999 677777777664 4789999988
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCccc
Q 001168 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
++.++++++.||.|++||.... ..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~----------------------------------------------------- 177 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IK----------------------------------------------------- 177 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EE-----------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---EE-----------------------------------------------------
Confidence 9999999999999999983211 00
Q ss_pred CccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecc
Q 001168 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~ 802 (1134)
.+.
T Consensus 178 ---------------------------------------------------------------------------~~~-- 180 (313)
T 3odt_A 178 ---------------------------------------------------------------------------TFS-- 180 (313)
T ss_dssp ---------------------------------------------------------------------------EEC--
T ss_pred ---------------------------------------------------------------------------EEe--
Confidence 000
Q ss_pred cccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCC
Q 001168 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1134)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 881 (1134)
. .| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|.
T Consensus 181 -------------------------------~--~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 181 -------------------------------G--IH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp -------------------------------S--SC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred -------------------------------c--cC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 0 03 67789999999998 66776 8999999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001168 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~ 959 (1134)
..|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.|+.|++||+.+++..
T Consensus 226 ~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 226 SFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999999 77 588999999999999999999999999999999999999998 667899999999999987754
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=308.20 Aligned_cols=298 Identities=12% Similarity=0.142 Sum_probs=237.0
Q ss_pred EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec-CccCcceEEEEEeCC---CCEEEEEeCCCe
Q 001168 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTT---RNRFLAAGDEFQ 611 (1134)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~ 611 (1134)
...+|...|.+++|+|++..+++++....+++.|++||+.+++...... +|.. .|.+++|+|+ ++++++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS-CEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC-cEEEEEEcCCCCCCceEEEecCCCe
Confidence 3456888999999999998777665321237899999999988765544 4444 8999999999 699999999999
Q ss_pred EEEEECCCCe-eEEEEeCCCCCCCcceEE------EccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCC
Q 001168 612 IKFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (1134)
Q Consensus 612 i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1134)
|++||+.+++ .+..+..|. ..|.+++ |+|++++|++++.||.|++||+.++......+..+..
T Consensus 92 i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------- 161 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-------- 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT--------
T ss_pred EEEEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC--------
Confidence 9999999988 788887664 4788884 5789999999999999999999876323332222110
Q ss_pred CCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEE
Q 001168 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 764 (1134)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 764 (1134)
T Consensus 162 -------------------------------------------------------------------------------- 161 (357)
T 3i2n_A 162 -------------------------------------------------------------------------------- 161 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEE----EecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001168 765 RLPDSIAASKVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 765 ~~~~~~~~~~v~~~~----~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
.+...+.+++ |+|+++.+++++.||.|++||+... .... ... | .
T Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~--~~~--~-~ 209 (357)
T 3i2n_A 162 -----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRW--ETN--I-K 209 (357)
T ss_dssp -----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEE--EEE--C-S
T ss_pred -----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceee--ecC--C-C
Confidence 0123566776 7899999999999999999987532 2111 111 5 8
Q ss_pred CceEEEEecc---CCCEEEEEe-CCeEEEEEcCCCeEEEEe-----cCCCCceEEEEEcCCCCc-EEEEEeCCCcEEEEE
Q 001168 841 ESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYN 910 (1134)
Q Consensus 841 ~~i~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~-~lasg~~dg~i~iwd 910 (1134)
..|.+++|+| ++.++++++ ||.|++||+.+++....+ .+|...|++++|+| +++ +|++|+.||.|++||
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEee
Confidence 8999999999 999999998 999999999876654443 48999999999999 777 899999999999999
Q ss_pred cCCc-------------------eEEEEecCcccceEEEEEecCCCEEE-EEcCCCcEEEEeCCCcc
Q 001168 911 VRVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 911 ~~~~-------------------~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~ 957 (1134)
+.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9753 46778899999999999999999998 89999999999998754
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=289.09 Aligned_cols=283 Identities=15% Similarity=0.255 Sum_probs=237.6
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
..++|+||+++ +||+|. |++|+|||+.+++.+... .+.+|...|.+++|+|++++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEE
Confidence 35789999987 677765 999999999999876431 1457889999999999999999999
Q ss_pred CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCCCCCeEEEEee
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~ 506 (1134)
.||+|++||+.+++.+. .+.+|...+.++.+ ++. .+++|+.++.+++|+...+ ..+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999987665 77899988877655 455 8999999999999998875 4567788999999999997
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001168 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
+.+ .++++++.|++|++||+.+++. ......+...|.+++++|++..++.... +..++.|++||.........
T Consensus 160 ~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred CCC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 755 8999999999999999987654 3355667789999999998876653322 13478899999998887776
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001168 583 YSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
..... .+..+.|+|+++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|||++|++++.||+|+|||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 65443 688999999999988765 79999999999999999998764 5899999999999999999999999999
Q ss_pred CCCc
Q 001168 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=313.32 Aligned_cols=299 Identities=11% Similarity=0.177 Sum_probs=232.6
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC------------cCe
Q 001168 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------ISV 411 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V 411 (1134)
.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCce
Confidence 4568999999999998 7899999999999999987631100000 000111256787 889
Q ss_pred EEEEECCCC--CEEEEEeCCCeEEEEEcCCCCccc------------------------------------ceeE-eecc
Q 001168 412 NRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QHLE-IDAH 452 (1134)
Q Consensus 412 ~~i~~spdg--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~~~-~~~h 452 (1134)
.+++|+|++ .+|++++.|+.|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999997643210 0011 3579
Q ss_pred cCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeeeE-------EecCCCCCeEEEEeeccCCccEEEEEecCCeEE
Q 001168 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~ 524 (1134)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++++.||.|+
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIR 252 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEE
Confidence 99999999999999 88998 799999999984 44444 2568999999999987532 7999999999999
Q ss_pred EEEccCCCc----eeEecCCCC------------cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCcc
Q 001168 525 AWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFR 587 (1134)
Q Consensus 525 ~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~ 587 (1134)
+||+++... ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++++..+.+|.
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESCG
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeeccc
Confidence 999998876 667777765 899999999999999886 37899999997 88888888875
Q ss_pred Cc-----------c---eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC------------------------
Q 001168 588 KR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD------------------------ 629 (1134)
Q Consensus 588 ~~-----------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------ 629 (1134)
.. . +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccc
Confidence 30 0 224899999999999999999999999998876422110
Q ss_pred ------CCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 630 ------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 630 ------~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
.....|..++|+|++.+||+++.++ +++|..
T Consensus 408 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 408 ISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1224578899999999999998875 777764
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-32 Score=313.66 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=201.4
Q ss_pred ccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC--CcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001168 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT--GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
..+.++|.+++|+|+|++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 346789999999999999999999999999999987 3333 6778999999999999998 89999999999999
Q ss_pred ECCCCe---eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecC-CCCcEEEEEECCCCCE
Q 001168 483 DVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTR 555 (1134)
Q Consensus 483 d~~~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~ 555 (1134)
|+.+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 999887 677888999999999998854 8999999999999999998763 556666 8899999999999999
Q ss_pred EEEEeeCCCCCCcEEEEeCC------------------CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001168 556 LFSCGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
+++++. ++.|++||+. .++++..+ +|.. .|.+++|+|++++|++++.||.|++||+
T Consensus 161 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 161 LAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999985 7889999985 35566677 6665 8999999999999999999999999999
Q ss_pred CCCee----EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001168 618 DNMNM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 618 ~~~~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+...
T Consensus 235 ~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred CCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 99887 66666654 479999999999999998877666 666553
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-31 Score=300.44 Aligned_cols=283 Identities=16% Similarity=0.239 Sum_probs=227.9
Q ss_pred cceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001168 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+..+.+++ ..+++++.|+.|++|++.. +......... | ...|.+++|+|++
T Consensus 94 ~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~----------------------~~~~~~~~~~--~-~~~v~~v~~s~~~ 146 (401)
T 4aez_A 94 YYLNLLDWSN--LNVVAVALERNVYVWNADS----------------------GSVSALAETD--E-STYVASVKWSHDG 146 (401)
T ss_dssp TTCBCEEECT--TSEEEEEETTEEEEEETTT----------------------CCEEEEEECC--T-TCCEEEEEECTTS
T ss_pred ceEEEEeecC--CCEEEEECCCeEEEeeCCC----------------------CcEeEeeecC--C-CCCEEEEEECCCC
Confidence 3455566654 5689999999999998643 2222211222 5 8899999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-CceEEEEecCcccceEEE
Q 001168 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNRITGL 930 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~-~~~~~~~l~~h~~~i~~l 930 (1134)
++|++|+ ||.|++||+.+++.+..+.+|...|.+++|++ ++|++|+.||.|++||+. .+..+..+.+|.+.|.++
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999998 99999999999999999999999999999954 699999999999999998 567788899999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE-EE---CCeEEEEeC-CCc
Q 001168 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQISVYDS-KLE 1005 (1134)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~v~vwd~-~~~ 1005 (1134)
+|+|++++|++++.|+.|++||+.+++.. ....+|. ..|.+++|+|++..+++ ++ |+.|++||+ ++.
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIPK-----FTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSEE-----EEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCcc-----EEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 99999999999999999999999987632 2333444 57899999998865554 54 899999999 666
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEEE--ecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC
Q 001168 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAG--FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN 1083 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~--~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1083 (1134)
.+..+. |...|.+++|+|++++|+++ +.||.|++||+.++......... .+...+.+++|+| ++.
T Consensus 296 ~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~-dg~ 362 (401)
T 4aez_A 296 RVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP--------AHDTRVLYSALSP-DGR 362 (401)
T ss_dssp EEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE--------CCSSCCCEEEECT-TSS
T ss_pred EEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec--------CCCCCEEEEEECC-CCC
Confidence 655553 36789999999999999994 48999999999997665543211 2335667899999 889
Q ss_pred EEEEEeCCCcEEEEecCCCcccc
Q 001168 1084 QIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1084 ~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
+|++++.||+|++|++.+++...
T Consensus 363 ~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 363 ILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEECTTSEEEEEECCC-----
T ss_pred EEEEEeCCCcEEEEECCCCcccc
Confidence 99999999999999999877543
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.5e-32 Score=297.55 Aligned_cols=250 Identities=18% Similarity=0.292 Sum_probs=207.1
Q ss_pred ccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEE
Q 001168 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~ 480 (1134)
++.+|.+.|.+++|+|+|++||+|+.|++|++||+.++... ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999876431 23468899999999999863 67 799999999999
Q ss_pred EEECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCC---
Q 001168 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 552 (1134)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1134)
+||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567888999999999999986678999999999999999987643 2345667788999999998
Q ss_pred --------------CCEEEEEeeCCCCCCcEEEEeCCCC---eeEEEecCccCcceEEEEEeCCC----CEEEEEeCCCe
Q 001168 553 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 611 (1134)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 611 (1134)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 467888874 888999999755 46778888887 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001168 612 IKFWDMDNM---N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 612 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 12233333 3579999999999999999999999999975
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-30 Score=303.59 Aligned_cols=272 Identities=21% Similarity=0.310 Sum_probs=238.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 6678999887 676 688999999999999998876653 6789999999999 889999
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee---EEecCCCCCeE
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 501 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~~h~~~v~ 501 (1134)
+|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.+++.+ ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987655 7789999999999964 4 7999999999999999988765 67889999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001168 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
++++ ++.++++++.||.|++||+++.+....+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999999 4688998874 7889999999999999
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---------eEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001168 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
.+.+|.. .|.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEeC
Confidence 9999887 8999988 78899999999999999997765 677777664 47999999 7889999999
Q ss_pred CCcEEEEECCCc
Q 001168 653 DNGIKILANSDG 664 (1134)
Q Consensus 653 dg~i~iw~~~~~ 664 (1134)
||.|++||+.+.
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.7e-31 Score=294.63 Aligned_cols=279 Identities=8% Similarity=0.092 Sum_probs=237.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCC-EE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~l 423 (1134)
|.+.|++++|+|+++ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 889999999999998 678899999999999988762110 001347999999999999999 99
Q ss_pred EEEeCCCeEEEEEc-CCCCcccceeEeec--ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---------CeeeE
Q 001168 424 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 491 (1134)
Q Consensus 424 as~~~dg~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---------~~~~~ 491 (1134)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87643 36778 999999999999 77 899999999999999988 77777
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCc--eeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCC
Q 001168 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1134)
.+. |...|.+++|+++ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 776 8999999999763 399999999999999998 443 334556777999999999 9999999874 78
Q ss_pred cEEEEeCCCC------eeEEEecCccC--------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001168 568 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 568 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
.|++|++... +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+. ..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~ 295 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-ED 295 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SS
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-CC
Confidence 8999999887 77778877742 379999999999999999999999999999999988887651 34
Q ss_pred CcceEEEccCCCEEEEEeCCCc-EEEE
Q 001168 634 ASPRLRFNKEGSLLAVTTSDNG-IKIL 659 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~-i~iw 659 (1134)
.|.+++ |++++|++++.||. .+.+
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CceEec--CCCCeEEEEecCCcccccc
Confidence 788888 99999999999998 4433
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.1e-31 Score=303.81 Aligned_cols=297 Identities=13% Similarity=0.173 Sum_probs=242.8
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC-CCCEEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~las 425 (1134)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35567999999876777789999999999966433211 1112678999999999999 9999999
Q ss_pred EeCCCeEEEEEcCCCCcc----cceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe--cCCCCC
Q 001168 426 AFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAP 499 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--~~h~~~ 499 (1134)
|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++|+.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233478899999999999999844 8999999999999999999999999 889999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cCCCCc-EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001168 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
|.+++|+|++ .+|++++.|+.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||++++
T Consensus 179 v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 9999998854 89999999999999999998888777 566654 899999999998888731 124889999999986
Q ss_pred ee-EEEecCccCcceEEEEEeCCCCEEEE-EeCCCeEEEEECCCCee-EEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001168 578 AI-KRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 578 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
+. +..........+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce
Confidence 64 33443333337999999999999975 55799999999998874 555554444568999999999988764 567
Q ss_pred cEEEEECCCc
Q 001168 655 GIKILANSDG 664 (1134)
Q Consensus 655 ~i~iw~~~~~ 664 (1134)
.+++|++.++
T Consensus 334 ~~~~~~l~~~ 343 (402)
T 2aq5_A 334 IARFYKLHER 343 (402)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEcCCC
Confidence 9999999875
No 98
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=8.7e-30 Score=294.29 Aligned_cols=292 Identities=17% Similarity=0.266 Sum_probs=235.4
Q ss_pred EecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCce
Q 001168 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (1134)
Q Consensus 764 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i 843 (1134)
+..|+......+..++||+++ +++.+.|++|+|||.. +|+.... +....| ...|
T Consensus 97 l~ap~~~~d~y~~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~~V 150 (420)
T 4gga_A 97 LDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEYI 150 (420)
T ss_dssp EECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCCE
T ss_pred EECCCCcccccceeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCcE
Confidence 334443345567789999764 4555669999999764 3333221 122236 8889
Q ss_pred EEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEec
Q 001168 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLK 921 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~ 921 (1134)
++++|+|||++||+|+ ||.|+|||+.+++.+..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.
T Consensus 151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEec
Confidence 9999999999999999 9999999999999999999999999998885 479999999999999998864 5567889
Q ss_pred CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEE-EEE---ECCeE
Q 001168 922 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL-LVV---HESQI 997 (1134)
Q Consensus 922 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l-~~~---~d~~v 997 (1134)
+|...+..+.|+|+++++++++.|+.+++|+..+++.... .+.....+. ..|..++|+|++..+ +++ .|++|
T Consensus 228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred ccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEE
Confidence 9999999999999999999999999999999998764322 222233343 578999999977644 443 47999
Q ss_pred EEEeC-CCccccccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCcceeeecCCcccccccccCCCCccEE
Q 001168 998 SVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV 1074 (1134)
Q Consensus 998 ~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1134)
++||+ ++.+...+.. ...+.++.|+++++.+++++ .|+.|+|||+.+++++.++.+| ...+.+
T Consensus 304 ~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH----------~~~V~~ 369 (420)
T 4gga_A 304 RIWNVCSGACLSAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVLS 369 (420)
T ss_dssp EEEETTTTEEEEEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEEE
T ss_pred EEEeCCccccceeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC----------CCCEEE
Confidence 99999 6666555433 46899999999999988765 7999999999999999988754 356789
Q ss_pred EeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1075 IAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1075 ~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
++|+| ||++|+||+.||+|++||+.+.+
T Consensus 370 l~~sp-dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 370 LTMSP-DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEECT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 99999 88999999999999999997654
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=3.4e-31 Score=292.75 Aligned_cols=247 Identities=11% Similarity=0.093 Sum_probs=200.5
Q ss_pred CCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCe--EEEEecCCCCceEEEEEcCC-CCcEEEEEeCCCcEEEEEcCC
Q 001168 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 838 h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~-~~~~lasg~~dg~i~iwd~~~ 913 (1134)
| ...|++++|+|+|++||+|+ |++|+|||+.+++ .+..+.+|...|.+++|+|. ++++|++|+.|++|++||+.+
T Consensus 12 H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 H-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred c-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 8 99999999999999999999 9999999998774 56789999999999999862 488999999999999999998
Q ss_pred c--eEEEEecCcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCC----
Q 001168 914 D--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---- 985 (1134)
Q Consensus 914 ~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd---- 985 (1134)
+ +.+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++... .......+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeecccc---CCcceEEEccccCCc
Confidence 7 466778899999999999998 789999999999999999875321 1123344555 46889999998
Q ss_pred -------------CcEEEE-EECCeEEEEeCC-CccccccCCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEeC
Q 001168 986 -------------QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 986 -------------g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~v~~v~~s~dg----~~l~~~~~dg~I~vwd~ 1046 (1134)
+++|++ +.|+.|++||+. ...........+|...|.+++|+|++ ++|++++.||+|++|++
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 467888 578999999994 32222233346789999999999987 89999999999999999
Q ss_pred CCcce---e-eecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001168 1047 ETLRF---R-CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1047 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.++.. . ..+. .+...+.+++|+| ++++|++|+.||+|++|+...
T Consensus 246 ~~~~~~~~~~~~~~----------~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWSPKLLH----------KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCBCCEEE----------ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchhhhhhh----------cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 87321 1 1111 2335677999999 789999999999999999863
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.3e-29 Score=281.44 Aligned_cols=282 Identities=14% Similarity=0.221 Sum_probs=226.9
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001168 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.++++||+++ .|+++. |++|++||+.+++.+..+..+. ...|.+++|+|+++++++|+.||.|++||+.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4678999986 666654 7789999999999988876432 23799999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCccc
Q 001168 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+..+..|.. ...++++++..+++++.++.+++|+..........+.
T Consensus 102 ~~~~~~h~~----~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 147 (318)
T 4ggc_A 102 LRNMTSHSA----RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS------------------------------ 147 (318)
T ss_dssp EEEEECCSS----CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE------------------------------
T ss_pred EEEecCccc----eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc------------------------------
Confidence 999987743 3455667788999999999999999876522222111
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEec
Q 001168 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 782 (1134)
+|...+..+.+++
T Consensus 148 -------------------------------------------------------------------~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 148 -------------------------------------------------------------------GHSQEVCGLRWAP 160 (318)
T ss_dssp -------------------------------------------------------------------CCSSCEEEEEECT
T ss_pred -------------------------------------------------------------------CccCceEEEEEcC
Confidence 2567788999999
Q ss_pred CCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE---EEe
Q 001168 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM---SAS 859 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la---~~s 859 (1134)
+++++++++.||.|++||+...+.... ...... .| ...|.+++++|++..++ +++
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------~~~~~~--~~-~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWV-------------------PLQTFT--QH-QGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSC-------------------CSEEEC--CC-CSCEEEEEECTTSTTEEEEEECT
T ss_pred CCCEEEEEecCcceeEEECCCCccccc-------------------ceeeec--cc-CCceEEEEecCCCCcEEEEEecC
Confidence 999999999999999999754321100 000111 25 78899999999776433 344
Q ss_pred -CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe--CCCcEEEEEcCCceEEEEecCcccceEEEEEecCC
Q 001168 860 -GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1134)
Q Consensus 860 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~--~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1134)
++.|++||........... +...+..+.|+| ++..+++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+||+
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 7899999999888776655 677899999999 677666554 79999999999999999999999999999999999
Q ss_pred CEEEEEcCCCcEEEEeCCCc
Q 001168 937 NALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~ 956 (1134)
++|||+|.|++|+|||+...
T Consensus 297 ~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEecCCeEEEEECCCC
Confidence 99999999999999999763
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=2.1e-30 Score=294.32 Aligned_cols=293 Identities=16% Similarity=0.224 Sum_probs=241.6
Q ss_pred ccccceEEEEec-CCCCeeEEEEecC---CCeEEEEEeCCCcEEEEEccC-ccccccccceeeccccccccccccccccC
Q 001168 333 DDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 333 ~~~~~~~~~~l~-h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
+..+.+.+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h 85 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH 85 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc
Confidence 445666777777 9999999999999 45 789999999999999987 433211 25679
Q ss_pred CcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEE--ecCCCcEEEEEEcCCCcEEEEECC
Q 001168 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~--s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
...|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++||+.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSS
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECC
Confidence 999999999999999999999999999999987644 35579999999999 88887 89999999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCCCE----EEEE
Q 001168 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFSC 559 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~ 559 (1134)
+++.+..+..|. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... ++++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 160 SSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999999888665 566666643 588999999999999998766544332 23445666666665554 7777
Q ss_pred eeCCCCCCcEEEEeCCCC---eeEEEecCccCc-----------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001168 560 GTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
+. ++.|++||+... ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 235 ~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 235 SI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp ET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 64 888999999987 566777777642 599999999999999999999999999999999988
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+..+. ..|.+++|+|+|++|++++.|+..+.|++
T Consensus 311 ~~~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 311 SEQLD--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCCCS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ecCCC--CCceEEEECCCCCeEEEEecccccccccc
Confidence 87654 48999999999999999999886555544
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.6e-30 Score=300.25 Aligned_cols=249 Identities=13% Similarity=0.214 Sum_probs=207.6
Q ss_pred cCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc--------ccceeEeeccc------------CCeeEEEEecCC
Q 001168 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 465 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~l~~s~d~ 465 (1134)
.|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999997652 11244778998 889999999998
Q ss_pred --CcEEEEEEcCCCcEEEEECCCCeee---------------------------------------EE-ecCCCCCeEEE
Q 001168 466 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 503 (1134)
Q Consensus 466 --~~~~l~sg~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i 503 (1134)
. .|++++.|+.|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998765432 12 36899999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeE--------ecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeC
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+|+|++ .+|+++ .|+.|++||++....... +..|...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 998854 899998 899999999985443332 45788899999999999 89999875 788999999
Q ss_pred CCCee----EEEecCccC-----------cceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCC----
Q 001168 575 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 634 (1134)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1134)
++++. +..+..+.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788887764 27999999999999999999 9999999997 888888887643111
Q ss_pred ---------cceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 635 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 ---------v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999987
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.5e-29 Score=284.80 Aligned_cols=253 Identities=12% Similarity=0.163 Sum_probs=217.2
Q ss_pred ccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcc-cceeEeecccCCeeEEEEec--CCCcEEEEEEcCCCcE
Q 001168 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i 479 (1134)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| +++ +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 46789999999999999999999999999999999976432 33446779999999999999 577 89999999999
Q ss_pred EEEECCCC---------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec------------
Q 001168 480 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 538 (1134)
Q Consensus 480 ~iwd~~~~---------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------------ 538 (1134)
++||+.++ +.+..+.+|...|.+++|+|+.++.++++++.|+.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 567888999999999999987435899999999999999998876543222
Q ss_pred -CCCCcEEEEEECCC---CCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCccCcceEEEEEeCCC----CEEEEEeC
Q 001168 539 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 608 (1134)
Q Consensus 539 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 608 (1134)
.+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889998874 67788888777765 677778776 89999999998 79999999
Q ss_pred CCeEEEEECCCC----------------------------------------------eeEEEEeCCCCCCCcceEEEcc
Q 001168 609 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
||.|++||+..+ +.+..+..| ...|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEcC
Confidence 999999999865 455555544 45799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001168 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999877
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.7e-29 Score=291.75 Aligned_cols=234 Identities=17% Similarity=0.305 Sum_probs=210.1
Q ss_pred ccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001168 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.+|...|.|++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ +|++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987655 77899999999999 677 8999999999999999
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce---eEecCCCCcEEEEEECCCCCEEEEEee
Q 001168 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 99999999999999999999853 69999999999999999987765 567788899999999 7889999874
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001168 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1134)
++.|++||+++++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..|. ..|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe-
Confidence 88899999999999999999887 89999884 6899999999999999999999999998664 47899988
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001168 642 KEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998665
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.2e-29 Score=282.83 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=210.5
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987632223355689999999999999872 388899999999999
Q ss_pred C-CCCeeeEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC---------CCceeEecCCCCcEEEEEECC
Q 001168 484 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 551 (1134)
Q Consensus 484 ~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1134)
+ .+++. ..+.+ |...|.+++|++ + .++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999998 3 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEeeCCCCCCcEEEEeCCC-Cee--EEEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCC------e
Q 001168 552 DGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------N 621 (1134)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~ 621 (1134)
++ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|+++.. +
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 777664 78899999998 543 223334444 899999999 9999999999999999999887 7
Q ss_pred eEEEEeCCCC-------CCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 622 MLTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 622 ~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
....+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 7788876643 347999999999999999999999999999877
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=287.76 Aligned_cols=257 Identities=15% Similarity=0.209 Sum_probs=213.1
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC--ccccccccceeeccccccccccccccccCCcCeEEEE
Q 001168 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
++..+. |.+.|++++|+|+|+ +||+|+.||.|+|||+.. ++.+. .+.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEE
Confidence 344555 999999999999998 788999999999999984 33332 2668999999999
Q ss_pred ECCC--CCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--e
Q 001168 416 WGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--K 489 (1134)
Q Consensus 416 ~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~~--~ 489 (1134)
|+|+ +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 999999999999999999987521 23366789999999999999 88 89999999999999998874 3
Q ss_pred eEEecCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEccCCCce----eEecCCCCcEEEEEECCC--
Q 001168 490 QYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD-- 552 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~-- 552 (1134)
...+.+|...|.+++|+|.. ++.++++++.|+.|++||+++.... ..+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999999842 4589999999999999999876643 466778899999999999
Q ss_pred -CCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEe--cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001168 553 -GTRLFSCGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 553 -~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
++++++++. ++.|++||+.++. ....+ ..+.. .|.+++|+|++++|++++.||.|++|++......
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 899999874 7889999999864 22222 22444 8999999999999999999999999999854433
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.5e-29 Score=283.08 Aligned_cols=261 Identities=11% Similarity=0.143 Sum_probs=219.5
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC--CCC
Q 001168 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGL 421 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~ 421 (1134)
.|.+.|++++|+|+|+ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |++
T Consensus 9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCS
T ss_pred ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCC
Confidence 3889999999999998 788999999999999987643211 0112567999999999999 699
Q ss_pred EEEEEeCCCeEEEEEcCCCCcc------cceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001168 422 MLGVAFSKHIVHLYTYNPTGEL------RQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+|++|+.||.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+..+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence 9999999999999999886431 234467789999999999999 88 8999999999999999988765443
Q ss_pred c-------------CCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCC----
Q 001168 494 E-------------GHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG---- 553 (1134)
Q Consensus 494 ~-------------~h~~~v~~i~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~---- 553 (1134)
. +|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 3 68889999999986 1248999999999998888777665 45677788899999999998
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCC----------------------------------------------eeEEEecCcc
Q 001168 554 TRLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFR 587 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~ 587 (1134)
++|++++. |+.|++||++++ +.+..+.+|.
T Consensus 231 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 231 QLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred eEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 78888874 788999999875 6677788887
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001168 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
. .|.+++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 7 89999999999999999999999999999886665543
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=288.93 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=218.0
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~i 481 (1134)
+.+|.+.|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ +. +|++|+.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 67899999999999999999999999999999998432 2233467899999999999987 77 8999999999999
Q ss_pred EECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECC------
Q 001168 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 551 (1134)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~------ 551 (1134)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|+.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 77888899999999999987435899999999999999998874 3446678888999999999
Q ss_pred -------CCCEEEEEeeCCCCCCcEEEEeCCCCe----eEEEecCccCcceEEEEEeCC---CCEEEEEeCCCeEEEEEC
Q 001168 552 -------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 552 -------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~ 617 (1134)
++.++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999875 7789999998764 5567777776 8999999999 899999999999999999
Q ss_pred CCCe---eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 618 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 618 ~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.++. ....+....+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9864 2333333335568999999999999999999999999998754
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.6e-29 Score=290.56 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=210.3
Q ss_pred cCeEEEEECCCCCEEE-EEeCCCeEEEEEcCCCCcc-cceeEeecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECC
Q 001168 409 ISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 409 ~~V~~i~~spdg~~la-s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|.+++|+| ++. +|++|+.|+.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455789999876554 5788999999999664332 33346779999999999999 777 89999999999999999
Q ss_pred CC-------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe--cCCCCcEEEEEECCCCCEE
Q 001168 486 AG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 486 ~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 556 (1134)
++ +.+..+.+|...|.+++|+|++. .+|++++.|+.|++||+.+++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 66788999999999999988642 59999999999999999998888888 7889999999999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEe-cCccCcceEEEEEeCCCCEEEEE---eCCCeEEEEECCCCee-EEEEeCCCC
Q 001168 557 FSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGG 631 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1134)
++++. ++.|++||+++++.+..+ ..|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 99974 788999999999999998 67776458999999999999998 7999999999998764 333332 22
Q ss_pred CCCcceEEEccCCCEEEEE-eCCCcEEEEECCCc
Q 001168 632 LPASPRLRFNKEGSLLAVT-TSDNGIKILANSDG 664 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~~ 664 (1134)
...+.+++|+|++++|+++ +.||.|++|++.++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 3478999999999999754 47999999999877
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=4.9e-29 Score=283.03 Aligned_cols=298 Identities=12% Similarity=0.151 Sum_probs=234.3
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEccC-CCce-eEecCCCCcEEEEEECCCCCEEEE
Q 001168 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDY-LGSR-VDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
|+....+.+..+.+|.+.|++++|+|+. +|.+|++++.||.|++||+.+ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 4555667778889999999999999862 248999999999999999997 4443 577789999999999999999999
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE--eCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001168 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF--DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
++. ++.|++||+.+++.+.. ..|.. .|.+++| +++++++++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQI-AQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCceee-ccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 974 78899999999987764 44555 8999999 8999999999999999999999999999888653 345
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCC
Q 001168 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1134)
Q Consensus 637 ~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1134)
++.+. +..+++++.++.+.+|++............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------------------- 209 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES------------------------------------------- 209 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC-------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc-------------------------------------------
Confidence 55554 558888999999999998654111100000
Q ss_pred CCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceE
Q 001168 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1134)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 796 (1134)
.+
T Consensus 210 -----------------------------------------------------~~------------------------- 211 (368)
T 3mmy_A 210 -----------------------------------------------------PL------------------------- 211 (368)
T ss_dssp -----------------------------------------------------SC-------------------------
T ss_pred -----------------------------------------------------cc-------------------------
Confidence 00
Q ss_pred EEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCE----EEEEe-CCeEEEEEcCCC
Q 001168 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF 871 (1134)
Q Consensus 797 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~----la~~s-dg~i~vwd~~~~ 871 (1134)
...+.++++.++... +++++ ||.|++||+...
T Consensus 212 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 212 -------------------------------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -------------------------------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -------------------------------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 112223333332222 66666 777788877765
Q ss_pred ---eEEEEecCCCC------------ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC
Q 001168 872 ---KVMTMFMSPPP------------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1134)
Q Consensus 872 ---~~~~~~~~~~~------------~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1134)
+....+.+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 44556666655 799999999 89999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCcEEEEeCCC
Q 001168 937 NALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~ 955 (1134)
++|++++.|+..+.|++-.
T Consensus 328 ~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEecccccccccccC
Confidence 9999999988666665544
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=286.58 Aligned_cols=299 Identities=11% Similarity=0.055 Sum_probs=234.2
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc---ccccccceeeccccc----------------------------
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE---RLAHKPFKVWDISAA---------------------------- 395 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 395 (1134)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 56555 47899999999988 3322 221100
Q ss_pred ------------cccccccccccCCcCeEEEEECCCCCEE-EEEeCCCeEEEEEcC--CCCcccceeEeecccCCeeEEE
Q 001168 396 ------------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIA 460 (1134)
Q Consensus 396 ------------~~~~~~~~l~~h~~~V~~i~~spdg~~l-as~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~ 460 (1134)
..........+|.+.|.+++|+|+|++| |+|+.||.|++||+. +++.+.... ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111134677789999999999996 899999999999999 776655221 125778999999
Q ss_pred EecCCCcEEEEEEcCCCcEEEEECCCCeeeE----EecCCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEccCCCcee
Q 001168 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1134)
Q Consensus 461 ~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~i~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~ 535 (1134)
|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+|+ ..+.+|++++.|++|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998887554 77889999999999987 224899999999999999999888777
Q ss_pred E-ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc------------------------Ccc
Q 001168 536 D-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRS 590 (1134)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1134)
. +..|...|.+++|+ ++++|++++. |+.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788999999999 9999999984 7889999999999888876431 236
Q ss_pred eEEEEEeCCCCEEEEEe-CCCeEEEEEC--CCC---eeEEEEeCCCCCCCcceEEEccCCCEEEEEeC------CCcEEE
Q 001168 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKI 658 (1134)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------dg~i~i 658 (1134)
+..++|+|+++++++++ .++.|++|++ ..+ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999998 8999999999 555 666777765 47899999996544433332 456888
Q ss_pred EECCC
Q 001168 659 LANSD 663 (1134)
Q Consensus 659 w~~~~ 663 (1134)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87643
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.4e-28 Score=256.07 Aligned_cols=293 Identities=16% Similarity=0.164 Sum_probs=208.3
Q ss_pred eeEEEEe-cCCCcEEEEEEcCCCcEEEEECCCC---eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001168 456 VNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 456 v~~l~~s-~d~~~~~l~sg~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
+.++.|- +..+.+.+++++ ...|++|+..++ +.++++.+|+.+|..+.+.|+..+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5566663 344555677777 568999999999 8999999999999999999876432222211
Q ss_pred CceeEecCCCCcEEEEEECCC----CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001168 532 GSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
..+...|.+++++|| ++++++++. .+.+|++.+ ++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~-----------------------g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTK-----------------------RRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETT-----------------------TEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCC-----------------------CcEEEecc
Confidence 234457889999999 889998763 266675433 33333322
Q ss_pred --CCCeEEEEEC-CCCeeEEEEeCCCCCCCcceEEEcc---CCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCC
Q 001168 608 --DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1134)
Q Consensus 608 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1134)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++++.+|..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 4777777777 34666666666644 678889999 7899999999999999999998 55555543321
Q ss_pred CCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccce
Q 001168 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1134)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 761 (1134)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCC
Q 001168 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1134)
Q Consensus 762 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~ 841 (1134)
+...+.+++|+|+|.++++++.+..
T Consensus 225 ---------~v~~v~~vafSpdG~~lvs~s~~~~---------------------------------------------- 249 (356)
T 2w18_A 225 ---------YQASVCHKAYSEMGLLFIVLSHPCA---------------------------------------------- 249 (356)
T ss_dssp -----------CCCEEEEEEETTEEEEEEC--------------------------------------------------
T ss_pred ---------ceeeeEEEEECCCCCEEEEeccCCC----------------------------------------------
Confidence 1235678899999988777654311
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEe-----cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001168 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++
T Consensus 250 ----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 250 ----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp ------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCS
T ss_pred ----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCc
Confidence 11467787 899999999999988765 367666544444 46799999999999999999999
Q ss_pred EEEEecCcccceE-EEEEecCCCEEEEEcCCCcEEEEeC
Q 001168 916 VKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 916 ~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
++.++.+|.+.+. .++|||||++|+||+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999988765 5899999999999999999999986
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-28 Score=276.26 Aligned_cols=283 Identities=13% Similarity=0.145 Sum_probs=217.4
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001168 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+++.++. |.+.|++++|||||+ +||+|+.+| ++|||+.+++.... .+...+..+++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~ 66 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRM 66 (355)
T ss_dssp ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEE
T ss_pred CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEE
Confidence 3444445 889999999999998 788888664 78999988765432 12235888999
Q ss_pred CCCCCEEE-EEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEec
Q 001168 417 GPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 494 (1134)
Q Consensus 417 spdg~~la-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~ 494 (1134)
+++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEec
Confidence 99999885 56778999999999987665 444 67799999998764 3333 3789999999998 7776665
Q ss_pred CCCCCeEEEEeeccCCccEEEE--EecCCeEEEEEccCCC----------------ceeEecCCCCcEEEEEECCCCCEE
Q 001168 495 GHEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
. +...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|
T Consensus 138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 4 444455555 35555 5899999999998765 256788999999999999999999
Q ss_pred EEEeeCCCCCCc-EEEEeCCCCeeEEEec-C-ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEE--E------
Q 001168 557 FSCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--T------ 625 (1134)
Q Consensus 557 ~~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~------ 625 (1134)
++++. |++ |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+.... .
T Consensus 211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EEEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EEEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99985 888 9999999999999998 5 555 89999999999999999999999999997653111 1
Q ss_pred ------------EeCC-CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 626 ------------VDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 626 ------------~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+... ........++|++|++.|++++.||.+++|++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1111 11123467999999999999999999999998766
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.7e-27 Score=268.46 Aligned_cols=328 Identities=11% Similarity=0.125 Sum_probs=258.2
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001168 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78999999999999999999999988765 48999998865 655 677799999999999888777776555 89999
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEE-EEEeCCCeEEEEECCCCeeEEEE
Q 001168 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1134)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999876653 36889999999999988887654 57899999999987 67778999999999999998888
Q ss_pred eCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccc
Q 001168 627 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++. ....
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~----------------------------------- 195 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDT----------------------------------- 195 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEE-----------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEE-----------------------------------
Confidence 7653 46899999999887 566778999999986551 0000
Q ss_pred cCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCc
Q 001168 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1134)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 785 (1134)
T Consensus 196 -------------------------------------------------------------------------------- 195 (391)
T 1l0q_A 196 -------------------------------------------------------------------------------- 195 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe----CC
Q 001168 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG 861 (1134)
Q Consensus 786 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s----dg 861 (1134)
. . + ...+.+++|+|+|+++++++ ++
T Consensus 196 -------------~----------------------------------~---~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 196 -------------V----------------------------------K---V-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp -------------E----------------------------------E---C-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred -------------E----------------------------------e---c-CCCccceEECCCCCEEEEEecCcCCC
Confidence 0 0 1 34567788888888887775 58
Q ss_pred eEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEE-EEEeCCCcEEEEEcCCceEEEEecCcccceE---EEE------
Q 001168 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLA------ 931 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-asg~~dg~i~iwd~~~~~~~~~l~~h~~~i~---~l~------ 931 (1134)
.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQP 302 (391)
T ss_dssp EEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCC
T ss_pred cEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccc
Confidence 89999999999988888665 578999999 77766 6778899999999999999988877765421 122
Q ss_pred ------EecCC----------CEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE
Q 001168 932 ------FSPTL----------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 932 ------~s~d~----------~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
|+.+. ..+...+.|.++++|++..+.... + ......|+++|.|.+.
T Consensus 303 ~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~---------~-----~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 303 VYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK---------K-----QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC---------S-----SSCEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC---------c-----CCCeEEeCCCceEEEE
Confidence 22221 345666778899999998766311 0 1134679999998876
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.2e-27 Score=276.04 Aligned_cols=336 Identities=11% Similarity=0.130 Sum_probs=255.3
Q ss_pred CeEEEE---ECCCCCEEEEE--------------eCCCeEEEEEc--CCCCcccceeEeecccCCeeEEEEecCCCcEEE
Q 001168 410 SVNRCV---WGPDGLMLGVA--------------FSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (1134)
Q Consensus 410 ~V~~i~---~spdg~~las~--------------~~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l 470 (1134)
.+..++ |+|+++.++.. +.++.+.+|.+ .++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455566 66666655543 22332344444 3332 2222244444 4567999999665 78
Q ss_pred EEEcCCCcEEEEECCCCeeeE-----EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEE
Q 001168 471 VTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 471 ~sg~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1134)
++++.|+.|++||+.+++.+. .+.+|...|.+++|++++ .++++++.|+.|++||+++.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888999999999999998887 455789999999996654 8999999999999999999888888888888999
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe--------CCCeEEEEEC
Q 001168 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWDM 617 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~ 617 (1134)
+++|+|+++.+++++. .++.|++||+++++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+
T Consensus 216 ~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp EEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred EEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 9999999999876552 37789999999999988887654 589999999999999987 4889999999
Q ss_pred CCCeeEEEEeCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccC
Q 001168 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1134)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1134)
.+++.+..+... ..+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 291 ~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~------------------------ 342 (433)
T 3bws_A 291 DKEKLIDTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP------------------------ 342 (433)
T ss_dssp TTTEEEEEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE------------------------
T ss_pred CCCcEEeeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec------------------------
Confidence 999887776432 257889999999755 56688999999998766 2111110
Q ss_pred CCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceE
Q 001168 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1134)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~ 776 (1134)
+...+.
T Consensus 343 --------------------------------------------------------------------------~~~~~~ 348 (433)
T 3bws_A 343 --------------------------------------------------------------------------VFDKPN 348 (433)
T ss_dssp --------------------------------------------------------------------------CSSSEE
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 234467
Q ss_pred EEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE
Q 001168 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la 856 (1134)
+++|+|+|+.+++++.+.. .+ +..+++
T Consensus 349 ~~~~s~dg~~l~~~~~~~~----------------------------------------------~~-------~~~~~~ 375 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPN----------------------------------------------HP-------TEGYLK 375 (433)
T ss_dssp EEEECTTSSEEEEEECCCC----------------------------------------------CT-------TTCTTS
T ss_pred eEEEcCCCCEEEEEecCCC----------------------------------------------cc-------cccccc
Confidence 8889999887777654310 00 223445
Q ss_pred EEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC-CCcEEEEEcCC
Q 001168 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRV 913 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~-dg~i~iwd~~~ 913 (1134)
+|+ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|++..
T Consensus 376 ~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 376 KGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 555 89999999999999988886 45799999999 8888887775 99999999863
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.1e-27 Score=276.34 Aligned_cols=305 Identities=8% Similarity=0.062 Sum_probs=248.4
Q ss_pred CccccCcccc--ceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc
Q 001168 327 PNVYSQDDLT--KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 327 ~~~~~~~~~~--~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
..+|.++... .+.+..+.....+.+++|+|++ .++++++.++.|++||+.+++...... ...+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecC--------------cccc
Confidence 3555565533 3667777767778899999955 588888889999999999887654211 1124
Q ss_pred ccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001168 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 5789999999999999999999999999999999877655 66688999999999999984 3467778999999999
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe--------cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001168 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
.+++.+..+..+ ..+.+++|+|++ .++++++ .|+.|++||+.+++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 999998888754 458999998754 7888887 5889999999877655544 334478899999999877
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC---------------CCeEEEEECCCCe
Q 001168 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMN 621 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1134)
++.+. .++.|++||+.+++.+..+... . .+.+++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPVF-D-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecCC-C-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 65542 4788999999999988887633 3 6889999999999988775 5799999999999
Q ss_pred eEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CCcEEEEECC
Q 001168 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1134)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~ 662 (1134)
.+..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 393 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888763 36899999999999998875 9999999975
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=4e-28 Score=281.01 Aligned_cols=266 Identities=15% Similarity=0.233 Sum_probs=217.1
Q ss_pred EEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC
Q 001168 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 339 ~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45566799999999999985568999999999999999863111000 000001112568999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCCcc----cceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eee
Q 001168 419 DGL-MLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 490 (1134)
Q Consensus 419 dg~-~las~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~~ 490 (1134)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999885432 223466789999999999995444 8999999999999999987 577
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEecCCCCcEEEEEECCCCCE-EEEEeeCCCCCCc
Q 001168 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESH 568 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~ 568 (1134)
..+..|...|.+++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++. +++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 78889999999999998652 4799999999999999998 4556788889999999999999964 667663 788
Q ss_pred EEEEeCCC--------------CeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCC
Q 001168 569 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1134)
|++||+.. .+.+..+.+|.. .|.+++|+|+++ .+++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356777777776 899999999998 8999999999999998753
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.7e-27 Score=270.02 Aligned_cols=278 Identities=10% Similarity=0.075 Sum_probs=227.5
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEE-EEEeCCCeEEEEEcC
Q 001168 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l-as~~~dg~i~iwd~~ 438 (1134)
+++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5788999999999999999876643 3334 458999999999987 567789999999999
Q ss_pred CCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-EEE
Q 001168 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 517 (1134)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~ 517 (1134)
+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++++ ..+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 887654 444444 8999999999994 3456777899999999999998888754 568999998765 655 788
Q ss_pred ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEe
Q 001168 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 597 (1134)
+.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988777766654 45699999999999865442 47889999999999888776543 68899999
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECCCchhhhhhccC
Q 001168 598 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 673 (1134)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1134)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|+++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999887 68999999999999988887653 46889999999987 56678999999999988 55555555
Q ss_pred Cc
Q 001168 674 RA 675 (1134)
Q Consensus 674 ~~ 675 (1134)
+.
T Consensus 285 ~~ 286 (391)
T 1l0q_A 285 GK 286 (391)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1e-27 Score=277.47 Aligned_cols=252 Identities=17% Similarity=0.274 Sum_probs=213.4
Q ss_pred cccCCcCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCC-------CcccceeEeecccCCeeEEEEecCCCcEEEEEEcC
Q 001168 404 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1134)
Q Consensus 404 l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~ 475 (1134)
...|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence 5679999999999997 789999999999999999862 112334477899999999999999886 7999999
Q ss_pred CCcEEEEECCCCee-------eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC---CceeEecCCCCcEE
Q 001168 476 DKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCT 545 (1134)
Q Consensus 476 d~~i~iwd~~~~~~-------~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 545 (1134)
||.|++||+.++.. ...+.+|...|.+++|+|.. +.+|++++.|+.|++||+++. .....+..|...|.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999987432 45677899999999999853 379999999999999999987 45667778899999
Q ss_pred EEEECCCCCE-EEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCC---
Q 001168 546 MMAYSADGTR-LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN--- 619 (1134)
Q Consensus 546 ~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 619 (1134)
+++|+|++.+ +++++. ++.|++||+++ +.++..+..|.. .|.+++|+|+++ .+++++.|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 9999999984 667764 78899999998 567888888877 899999999995 688899999999999987
Q ss_pred -----------CeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCc
Q 001168 620 -----------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 620 -----------~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+.+..+..| ...|.+++|+|+++ +|++++.||.|++|++.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2444444444 45799999999999 9999999999999998765
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-29 Score=308.95 Aligned_cols=249 Identities=14% Similarity=0.205 Sum_probs=211.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeeccccccccccccccccCCcCeEEEEECCC--C
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd--g 420 (1134)
|.+.|++++|+|+|+ ++++|+.||.|+|||+.++ +.+. .+.+|.+.|.+++|+|+ +
T Consensus 8 H~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 8 HNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCTTSC
T ss_pred CcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCCCCC
Confidence 899999999999998 6889999999999999843 3322 26789999999999998 9
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--eeEEecCC
Q 001168 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH 496 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h 496 (1134)
++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++|+.||.|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 9999999999999999998752 123367789999999999999 88 89999999999999998873 44567789
Q ss_pred CCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCC---CCEEEE
Q 001168 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSAD---GTRLFS 558 (1134)
Q Consensus 497 ~~~v~~i~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~---~~~l~~ 558 (1134)
...|.+++|+|.. ++.++++|+.||.|++||+++... ...+..|...|.+++|+|+ ++++++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 9999999999842 458999999999999999988743 3467788999999999999 899999
Q ss_pred EeeCCCCCCcEEEEeCCCCe-----eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001168 559 CGTSKEGESHLVEWNESEGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
++. ++.|++||+.++. .......+.. .|.+++|+|+++++++++.||.|++|++..+.
T Consensus 225 ~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred Eec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 875 7889999999864 2223333444 89999999999999999999999999998643
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.8e-27 Score=265.71 Aligned_cols=240 Identities=12% Similarity=0.184 Sum_probs=189.9
Q ss_pred cccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001168 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|...|.+++|||||++||+|+.++ +++||+.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 2 22335888999998883 346788899999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001168 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
+.+++.+..+. |...|.+++++++ .++++ .|+.|++||+.+. +....+.. ....+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 6779999999753 34443 4889999999987 44444433 445566777 67776521
Q ss_pred CCCCCcEEEEeCCCCe----------------eEEEecCccCcceEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeeEEE
Q 001168 563 KEGESHLVEWNESEGA----------------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTT 625 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 625 (1134)
..++.|++||+.++. .+..+.+|.. .|.+++|+|+|++|++|+.|++ |++||+.+++.+..
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 247889999999865 2678888887 8999999999999999999998 99999999999999
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+....+...|.+++|+|+|++|++++.|++|++||+.++
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 983223458999999999999999999999999999765
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-27 Score=275.40 Aligned_cols=286 Identities=10% Similarity=0.066 Sum_probs=227.3
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEecCccC------------------------------
Q 001168 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRK------------------------------ 588 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1134)
.++.+++|+++|++++++. ++.|++||+.+|+ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678999999999777664 5679999999998 6666553221
Q ss_pred -----------------------cceEEEEEeCCCCEE-EEEeCCCeEEEEECC--CCeeEEEEeCCCCCCCcceEEEcc
Q 001168 589 -----------------------RSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 589 -----------------------~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 159999999999996 788899999999999 888888887544455799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCccc
Q 001168 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
++++|++++.+|.+++|++.++.. ....
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~~--------------------------------------------------- 187 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKFT--------------------------------------------------- 187 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSCC---------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-cccc---------------------------------------------------
Confidence 999999999999999999876621 1000
Q ss_pred CccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecC---CcceeeeeccceEEEe
Q 001168 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS---GLSLLALASNAVHKLW 799 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~v~vw 799 (1134)
.. .-.+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 188 -----------------------------------~~-------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vw 225 (450)
T 2vdu_B 188 -----------------------------------QE-------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKIS 225 (450)
T ss_dssp -----------------------------------CC-------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEE
T ss_pred -----------------------------------ce-------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEE
Confidence 00 00126678999999999 9999999999999999
Q ss_pred ecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEec
Q 001168 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM 878 (1134)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 878 (1134)
|+.. +..+...+.+ | ...|.+++|+ |+++|++++ |+.|++||+.+++++..+.
T Consensus 226 d~~~----------------------~~~~~~~~~~--h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 226 HYPQ----------------------CFIVDKWLFG--H-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp EESC----------------------TTCEEEECCC--C-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred ECCC----------------------CceeeeeecC--C-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 8742 2222222333 7 8999999999 999999999 9999999999999888876
Q ss_pred C-------------------------CCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEc--CCc---eEEEEecCcccce
Q 001168 879 S-------------------------PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV--RVD---EVKTKLKGHQNRI 927 (1134)
Q Consensus 879 ~-------------------------~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~--~~~---~~~~~l~~h~~~i 927 (1134)
. ....|.+++|+| ++++|++++ .|+.|+||++ .++ +.+..+.+| +.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 280 YNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp CHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred chhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 3 235689999999 899999998 8999999999 666 777888888 889
Q ss_pred EEEEEecCCCEEEEE-cC------CCcEEEEeCCC
Q 001168 928 TGLAFSPTLNALVSS-GA------DAQLCMWSIDK 955 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~-~~------D~~i~iWd~~~ 955 (1134)
.+++|+|++ +++++ +. +..|.+|.+..
T Consensus 358 ~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 358 ISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 999999965 44444 33 45588887754
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.8e-28 Score=300.20 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=216.3
Q ss_pred ccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC--CCcEEEEEEcCCCcEE
Q 001168 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~ 480 (1134)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++.. .....+.+|.++|++++|+++ +. +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985322 233477899999999999988 77 899999999999
Q ss_pred EEECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECC-----
Q 001168 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1134)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1134)
+||+.+++ .+..+.+|...|.+++|+|+.++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 67788899999999999987445899999999999999998873 3456678888999999999
Q ss_pred --------CCCEEEEEeeCCCCCCcEEEEeCCCC----eeEEEecCccCcceEEEEEeCC---CCEEEEEeCCCeEEEEE
Q 001168 552 --------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 616 (1134)
+++.+++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999875 788999999877 56677888877 8999999999 89999999999999999
Q ss_pred CCCCeeE---EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 617 MDNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234567999999999999999999999999999865
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.3e-28 Score=270.34 Aligned_cols=196 Identities=11% Similarity=0.143 Sum_probs=156.4
Q ss_pred CCCCceEEEEecc--CCCEEEEEe-CCeEEEEEcCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001168 838 PTEESAACIALSK--NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 838 h~~~~i~~~~~s~--dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
| ...|.+++|+| +++++++++ ||+|++||+.+++....... |...|++++|+| ++.+||+|+.||.|++||+.+
T Consensus 124 ~-~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 124 S-ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp C-SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSC
T ss_pred C-CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence 5 67899999999 999999999 99999999999998777644 455899999999 999999999999999999999
Q ss_pred ceEE-EEecC-cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCc--eEEEEcCCCcEE
Q 001168 914 DEVK-TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE--TKVQFHNDQTHL 989 (1134)
Q Consensus 914 ~~~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~fspdg~~l 989 (1134)
++.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+++.... +.....+. ..+ .+++|+|+|++|
T Consensus 202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 202 PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA--YPTYTIPE---FKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS--SCCCBC--------CCEEEEECTTSSEE
T ss_pred CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee--eccccccc---ccccceEEEECCCCCEE
Confidence 9887 78888 999999999999999999999 45999999998764322 11111121 122 469999999999
Q ss_pred EEE-E-CCeEEEEeCC-CccccccCCCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEeCCC
Q 001168 990 LVV-H-ESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 990 ~~~-~-d~~v~vwd~~-~~~~~~~~~~~~h~~~v~~v~~s~---dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
+++ . ++.|++|++. .... +. ..++..++|++ +++.+++++.||.+.++-...
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKN--WT-----KDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCS--EE-----EEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEecCCCCcEEEEEEcccccc--eE-----ecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 994 4 8999999983 2221 11 14677888988 889999999999999886443
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-27 Score=267.07 Aligned_cols=267 Identities=9% Similarity=0.073 Sum_probs=212.3
Q ss_pred EEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeE
Q 001168 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1134)
Q Consensus 353 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i 432 (1134)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445665 789999999999999999876643 11 456888889988 9999999999
Q ss_pred EEEEcCC---------CCcccceeEe-ecccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeeeEEecC-CCCC
Q 001168 433 HLYTYNP---------TGELRQHLEI-DAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAP 499 (1134)
Q Consensus 433 ~iwd~~~---------~~~~~~~~~~-~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~ 499 (1134)
++|+... ++.+. .+ .+|.+.|.+++|+| +++ ++++|+.|++|++||+.+++.+..+.. |...
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLR---EIEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEE---EEECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred EEEEccCceEEeecCCcceeE---EeecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 9997663 32222 22 26778999999999 998 899999999999999999998776644 5568
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCce-eEecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001168 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
|.+++|+|++ .+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|++.+|++++ ++.|++||++++
T Consensus 173 i~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~ 245 (343)
T 3lrv_A 173 YSSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKD 245 (343)
T ss_dssp CCEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSS
T ss_pred eEEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCC
Confidence 9999998854 89999999999999999998887 67777 899999999999999999987 337999999998
Q ss_pred eeEEEecCccC--cce--EEEEEeCCCCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc---CCCEEEE
Q 001168 578 AIKRTYSGFRK--RSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 649 (1134)
Q Consensus 578 ~~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~ 649 (1134)
+.+..+..+.. ..+ .+++|+|+++++++++. |+.|++|++.+....... .++..++|.+ ++..+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 87665554211 133 36999999999999988 999999999765443332 2456778888 8889999
Q ss_pred EeCCCcEEEEECC
Q 001168 650 TTSDNGIKILANS 662 (1134)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1134)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999988543
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.9e-26 Score=242.22 Aligned_cols=295 Identities=15% Similarity=0.091 Sum_probs=195.3
Q ss_pred eEEEEecCCC-----CeeEEEEec-CCCeE-EEEEeCCCcEEEEEccCc---cccccccceeeccccccccccccccccC
Q 001168 338 TVVRTLNQGS-----NVMSMDFHP-QQQTI-LLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 338 ~~~~~l~h~~-----~V~~v~~sp-dg~~l-lasg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
+++..++... .+.++-|-. ..+.+ +++++ ...|++|+..++ +++++ ...|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~-------------------~~~~ 85 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYT-------------------WHFA 85 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEE-------------------EECC
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEE-------------------Eecc
Confidence 4455555322 245555533 34333 34444 689999999998 55543 3345
Q ss_pred CcCeEEEEECCCCCEEEEE-eCC-CeEEEEEcC--CC-CcccceeEeecccCCeeEEEEecCCCcEEEEEEc--CCCcEE
Q 001168 408 AISVNRCVWGPDGLMLGVA-FSK-HIVHLYTYN--PT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIK 480 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~-~~d-g~i~iwd~~--~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~ 480 (1134)
+.+|..++++||-.-|++. -.+ ..-.++-+. .. +...+...-.+|...|..+ ++++ ++.+++ .|+.|+
T Consensus 86 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 86 EVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVE 160 (356)
T ss_dssp SSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEE
T ss_pred CceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEE
Confidence 5556666666643322211 000 000111110 00 0011111112333334333 4454 455533 689999
Q ss_pred EEEC-CCCeeeEEecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEccCCCceeEecCCCC---cEEEEEECCCCCE
Q 001168 481 VWDV-VAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTR 555 (1134)
Q Consensus 481 iwd~-~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~ 555 (1134)
+|++ .+|+.+..+.+|...+..++|++ .+++.+|++++.|++|++||+.+++....+..+.. .+.+++|+|+|++
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 9999 45888888889999999999999 67779999999999999999999999888876443 6778899999999
Q ss_pred EEEEee--------CCCCCCcEEEEeCCCCeeEEEe-----cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001168 556 LFSCGT--------SKEGESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 556 l~~~~~--------~~~~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
+++++. .+..|++|++||..+++.+..+ .+|.. .+.+..+ ++..+++++.|++|+|||+.+++.
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEE--ETTEEEEEETTSCEEEEETTTCSE
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEcccc--CCCEEEEEcCCCcEEEEECCCCcE
Confidence 866442 2235889999999999988765 35544 3433344 378899999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.++.+|... .+..++|+|||++|++|+.|++|+|||.
T Consensus 318 l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999866431 3446899999999999999999999985
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2e-27 Score=271.11 Aligned_cols=304 Identities=14% Similarity=0.104 Sum_probs=201.7
Q ss_pred CCCeeEEEE---ecCCCeEEEEEeCCCcEEEEEccCcccccc-----ccceeeccccccc-----cccccccccCCcCeE
Q 001168 346 GSNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAH-----KPFKVWDISAASM-----PLQNALLNDAAISVN 412 (1134)
Q Consensus 346 ~~~V~~v~~---spdg~~llasg~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~l~~h~~~V~ 412 (1134)
+....++.| +|++..++++|. ++.|.+|+......... .....+....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345667777 456655777664 88899998753322111 0111111110000 000111234555556
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCCccc--ceeEeecccCCeeEEEEec--------CCCcEEEEEEcCCCcEEEE
Q 001168 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~--------d~~~~~l~sg~~d~~i~iw 482 (1134)
...+++++.+||+|+.|++|++||+.+++... ....+.+|.+.|++++|+| |++ +|++|+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66667788899999999999999999876532 2224679999999999998 777 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-------------------------e
Q 001168 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------Y 537 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------------------------~ 537 (1134)
|+.++.++..+.+|..+|.+++|+|.+ ..+|++++.|++|++||+.+++.... .
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999998888888999999999999864 25899999999999999987654322 1
Q ss_pred cCCCCcEEEEEEC-CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEE------------------EEEeC
Q 001168 538 DAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------------------VQFDT 598 (1134)
Q Consensus 538 ~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~~~ 598 (1134)
..+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 3455577888886 89999999874 78899999988776666554432 2222 22333
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 599 --TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 599 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++.++++|+.||.|++||+.+++....+..+. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 23356668899999999999998888776654 3799999999999999998775 556654
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.5e-26 Score=266.65 Aligned_cols=345 Identities=11% Similarity=0.159 Sum_probs=258.7
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCeeEEE
Q 001168 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM--DNMNMLTT 625 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~ 625 (1134)
+++|++..++++.. ++.|.+||..+++++.++.... .+.+++|+|+|+++++++.|+.|++||+ .+++.+..
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE
Confidence 37888877777653 7889999999999999998544 3788999999999999999999999999 88888888
Q ss_pred EeCCCCCCCcceEEEcc----CCCEEEEEeC-CCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCc
Q 001168 626 VDADGGLPASPRLRFNK----EGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~----d~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1134)
+... ..+..++|+| ||+++++++. +++|.+||..++ +.++.+..+.....
T Consensus 218 i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~--------------------- 272 (543)
T 1nir_A 218 IKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVD--------------------- 272 (543)
T ss_dssp EECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSS---------------------
T ss_pred EecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccC---------------------
Confidence 8743 2568999999 9999998885 899999998877 44433322110000
Q ss_pred ccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCccc-ccceEEEE
Q 001168 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779 (1134)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 779 (1134)
.. ..| ...+..+.
T Consensus 273 ---------------------------------------------------------~~---------~~~~~~~v~~i~ 286 (543)
T 1nir_A 273 ---------------------------------------------------------TQ---------TYHPEPRVAAII 286 (543)
T ss_dssp ---------------------------------------------------------SC---------CEESCCCEEEEE
T ss_pred ---------------------------------------------------------cc---------ccccCCceEEEE
Confidence 00 002 23678999
Q ss_pred EecCCcce-eeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccc-cccCCCCCCCCceEEEEeccCCCEEEE
Q 001168 780 YTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 780 ~s~~g~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
++|++..+ ++...++.|.+||+...+. +. ..+. + ...+..++|+|||+++++
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~----------------------l~~~~i~---~-~~~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDN----------------------LTVTSIG---A-APFLHDGGWDSSHRYFMT 340 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSS----------------------CEEEEEE---C-CSSCCCEEECTTSCEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCc----------------------ceeEEec---c-CcCccCceECCCCCEEEE
Confidence 99987655 4555679999998753211 00 0011 2 455678999999998876
Q ss_pred Ee--CCeEEEEEcCCCeEEEEecC----CCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCC-------ceEEEEecCc
Q 001168 858 AS--GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV-------DEVKTKLKGH 923 (1134)
Q Consensus 858 ~s--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~-------~~~~~~l~~h 923 (1134)
++ +++|.+||+.+++++..+.. |.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|
T Consensus 341 a~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 341 AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred EecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 65 78999999999999988874 55444443 5774577788775 689999999998 8999999999
Q ss_pred ccceEEEEEecCCCEEEEEc-------CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCe
Q 001168 924 QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~-------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1134)
.+.+..++++||+++|++++ .+++|.+||+.+++..... +.
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~-~~------------------------------- 467 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-LP------------------------------- 467 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-EC-------------------------------
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE-ee-------------------------------
Confidence 99999999999999999987 2679999999987732100 00
Q ss_pred EEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCcceeeecCCc
Q 001168 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-----CDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-----~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
+..+.....+...+..+.|+|||+.|+++. .|+.|.|||..|++++.++...
T Consensus 468 ----------v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 468 ----------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp ----------HHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ----------chhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 111111122367889999999999988763 4799999999999999988743
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.1e-26 Score=265.11 Aligned_cols=267 Identities=8% Similarity=0.026 Sum_probs=169.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE-----EEecCccCcceEEEEEeC--------CCCEEEEE
Q 001168 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK-----RTYSGFRKRSLGVVQFDT--------TRNRFLAA 606 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~ 606 (1134)
+........+++++.++++++. |++|++||..++... ..+.+|.+ .|++++|+| |+++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~----d~~v~lw~~~~~~~~~~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQ----DNTVRLIITKNETIITQHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---------CCEEEEEEEEEET----TSCEEEEEEETTEEEEEEEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred cCCCcceeecCCCCCEEEEEeC----CCcEEEEECCCCccceeeeecccCCCCC-ceEEEEEccccccccCCCCCEEEEE
Confidence 3344455567778888888875 888999999988653 34678877 899999998 78999999
Q ss_pred eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCC
Q 001168 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1134)
+.|++|++||+.++.++..+..+. ..+.+++|+|++. +|++++.|++|++||+.+++. ......+...
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~-~~~~~~~~~~-------- 231 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYPLS--SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS-AEENSQTELV-------- 231 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEECS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------C--------
T ss_pred ECCCeEEEEECCCCceeeeecCCC--CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc-cccccccCCc--------
Confidence 999999999999888777766553 4789999999874 899999999999999988732 2221111100
Q ss_pred CCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEe
Q 001168 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1134)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1134)
T Consensus 232 -------------------------------------------------------------------------------- 231 (393)
T 4gq1_A 232 -------------------------------------------------------------------------------- 231 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE
Q 001168 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1134)
Q Consensus 766 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1134)
+...+......+.. ... ... .| ...+.+
T Consensus 232 -----~~~~~~s~~~~~~~----~~~----------------------------------------~~~--~~-~~~v~~ 259 (393)
T 4gq1_A 232 -----KNPWLLTLNTLPLV----NTC----------------------------------------HSS--GI-ASSLAN 259 (393)
T ss_dssp -----SCCCSEEEESGGGC----------------------------------------------------CC-SSSCSE
T ss_pred -----ccceEEecccccce----eee----------------------------------------ecc--cc-ccccee
Confidence 00000000000000 000 000 13 555566
Q ss_pred EEec-cCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEE-------------------EEEcCCCCcEEEEEeCCC
Q 001168 846 IALS-KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF-------------------LAFHPQDNNIIAIGMEDS 904 (1134)
Q Consensus 846 ~~~s-~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~-------------------l~~s~~~~~~lasg~~dg 904 (1134)
++|+ +|++.+++++ |+++++||+.+++....+..|...+.. +.+.+.++.++++|+.||
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg 339 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG 339 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence 6654 5666666666 666666666655554444444333332 333333455778889999
Q ss_pred cEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001168 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
+|++||+.+++.+..+.+|..+|.+++|+|||++||+++.|| +.+|.+..
T Consensus 340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 999999999998888888999999999999999999999776 77776654
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2e-25 Score=263.45 Aligned_cols=323 Identities=12% Similarity=0.126 Sum_probs=252.1
Q ss_pred EecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc--cCCCceeEec
Q 001168 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDYD 538 (1134)
Q Consensus 461 ~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~ 538 (1134)
|+|++. ++++++.|++|.+||..+++++.++..+.. +.+++|+|++ ++|++++.|++|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 778886 889999999999999999999999984333 8899998754 89999999999999999 7766666666
Q ss_pred CCCCcEEEEEECC----CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc----------cCcceEEEEEeCCCCEEE
Q 001168 539 APGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 539 ~~~~~v~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~ 604 (1134)
....+..++|+| ||+++++++. .+++|.+||..+++++.++..+ ....+..+.++|++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 456789999999 9999998874 3678999999999999888753 233688899999876655
Q ss_pred -EEeCCCeEEEEECCCCeeEE--EEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCchhhhhhccCCccccCC
Q 001168 605 -AAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 605 -~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
+...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+....
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~----- 366 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGK----- 366 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS-----
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCC-----
Confidence 56689999999998876554 4432 23578899999999876655 5889999999877 2221111000
Q ss_pred CCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccc
Q 001168 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001168 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
..| .
T Consensus 367 ---------------------------------------------------------------------------~ph-~ 370 (543)
T 1nir_A 367 ---------------------------------------------------------------------------TPH-P 370 (543)
T ss_dssp ---------------------------------------------------------------------------SBC-C
T ss_pred ---------------------------------------------------------------------------CCC-C
Confidence 002 2
Q ss_pred CceEEEEeccC-CCEEEEEe--CCeEEEEEcCC-------CeEEEEecCCCCceEEEEEcCCCCcEEEEEe-------CC
Q 001168 841 ESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------ED 903 (1134)
Q Consensus 841 ~~i~~~~~s~d-g~~la~~s--dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~-------~d 903 (1134)
+....+ ++|+ |.+++++. |++|.|||+.+ +++++++.+|...+..++|+| ++++|++++ .+
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHH
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccC
Confidence 222222 3565 55666664 68899999888 899999999998999999999 899999887 27
Q ss_pred CcEEEEEcCCceEE-EEe--------cCcccceEEEEEecCCCEEEEE-----cCCCcEEEEeCCCcccc
Q 001168 904 SSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKL 959 (1134)
Q Consensus 904 g~i~iwd~~~~~~~-~~l--------~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~ 959 (1134)
++|.|||+.+++.. ..+ ..+...+..++|+|||+.|+.+ +.|+.|.|||.++++.+
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 79999999998876 443 4567889999999999988865 24799999999998854
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.9e-24 Score=246.19 Aligned_cols=284 Identities=8% Similarity=0.024 Sum_probs=219.9
Q ss_pred CCeeEEEEecCCCeEEEEEe----CCC----cEEEEEc--cCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888999999988888886 467 8999999 8887653211 3456666666666
Q ss_pred CC--------------CCCEEEEEeCC------CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC
Q 001168 417 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 417 sp--------------dg~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 54 26677776654 799999998543 33 6678999999999999999 78888877
Q ss_pred C---cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEE-EEecCCe--EEEEEccCCCceeEecCCCCcEEEEEEC
Q 001168 477 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1134)
Q Consensus 477 ~---~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 550 (1134)
+ .|++||+.+++.. .+..|...+.+++|+|++ ..|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 566788899999998865 7666 6666654 99999987654 5566677889999999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeeEEEEe
Q 001168 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 627 (1134)
|||++|++++. .++...|++||+.+++. ..+..+.. .+.+++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCC-EECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCE-EEEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998773 22344788999988774 33444443 78889999999999987754 58999999988764 333
Q ss_pred CCCCCCCcceEEEccCCCEEEEEeCCC---cEEEEECCCc
Q 001168 628 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDG 664 (1134)
Q Consensus 628 ~~~~~~~v~~~~~s~d~~~l~~~~~dg---~i~iw~~~~~ 664 (1134)
.+ . .+.+++|+|||++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 32 2 688999999999999988877 7999998644
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=6.7e-24 Score=243.18 Aligned_cols=306 Identities=14% Similarity=0.146 Sum_probs=231.2
Q ss_pred cCCeeEEEEecCCCcEEEEEEc----CCC----cEEEEEC--CCCeee--EEecCCCCCeEEEEeeccC-----------
Q 001168 453 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 509 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~i~~~~~~----------- 509 (1134)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346788889998876 676775 567 8999999 899887 4588898888877766420
Q ss_pred -CccEEEEEecC------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001168 510 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 510 -~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.+. ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 44566667788999999999999999987532 2468999999998875 4
Q ss_pred ecCccCcceEEEEEeCCCCEEE-EEeCCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CC--cE
Q 001168 583 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 656 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg--~i 656 (1134)
+..+.. .+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCcEE
Confidence 555555 789999999999888 555554 499999998876 344433 346889999999999988876 44 45
Q ss_pred EEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCc
Q 001168 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
.+||+.++. .. .
T Consensus 294 ~~~d~~~~~-~~-~------------------------------------------------------------------ 305 (415)
T 2hqs_A 294 YKVNINGGA-PQ-R------------------------------------------------------------------ 305 (415)
T ss_dssp EEEETTSSC-CE-E------------------------------------------------------------------
T ss_pred EEEECCCCC-EE-E------------------------------------------------------------------
Confidence 566655431 00 0
Q ss_pred ccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCccccc
Q 001168 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 816 (1134)
T Consensus 306 -------------------------------------------------------------------------------- 305 (415)
T 2hqs_A 306 -------------------------------------------------------------------------------- 305 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-C---CeEEEEEcCCCeEEEEecCCCCceEEEEEcCC
Q 001168 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1134)
Q Consensus 817 ~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 892 (1134)
+.. | ...+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+|
T Consensus 306 ----------------l~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 306 ----------------ITW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP- 363 (415)
T ss_dssp ----------------CCC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-
T ss_pred ----------------Eec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-
Confidence 000 2 34566788888888888776 3 47999999988774 455554 899999999
Q ss_pred CCcEEEEEeCCC---cEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001168 893 DNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 893 ~~~~lasg~~dg---~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
++++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 899998888877 79999987 556778999999999999999654
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2e-23 Score=260.65 Aligned_cols=303 Identities=13% Similarity=0.092 Sum_probs=213.3
Q ss_pred CCCeeEEEEecCCCeEEEEEeC-CC-----cEEEEEccCccccccccceeec-----cccccccc-cccccccCCcCeEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWD-----ISAASMPL-QNALLNDAAISVNR 413 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~l~~h~~~V~~ 413 (1134)
...|++++|||||+ .|++++. || .|.+||+.+++........... +....... ....+ .....|.+
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCcce
Confidence 35799999999998 4666666 87 9999999988754321100000 00000000 00000 00134889
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCC--cccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001168 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
++|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|+|||+ +|+.++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999987 999999999872 233 4557888899999999999 777776 5699999999988765
Q ss_pred EecCCCCC----------------eEEEEeeccCCccEEEEEecCC---------------------------------e
Q 001168 492 TFEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG---------------------------------K 522 (1134)
Q Consensus 492 ~~~~h~~~----------------v~~i~~~~~~~~~~l~s~~~d~---------------------------------~ 522 (1134)
....+... +.+++|+|++ ++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 54444432 4678898754 8888887765 8
Q ss_pred EEEEEccC-CCceeEec--CCCCcEEEEEECCCCCEEEEEee-CCCCCCcEEEEeCCCCeeEEEecCccCc---ceEEEE
Q 001168 523 IKAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKR---SLGVVQ 595 (1134)
Q Consensus 523 i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~ 595 (1134)
|.+||+.+ ++...... .+...+..++| |||++|++.+. ....+..|++||+.+++....+..+... .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 89999987 66544332 35668999999 99999997764 2234678999999999887777665432 245789
Q ss_pred EeCCCCEEEEEeCCCeEEEEECC-CCeeEEEEeCCCCCCCcceE-EEccCCCEEEEEeC-CC--cEEEEECCC
Q 001168 596 FDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTS-DN--GIKILANSD 663 (1134)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~~~~~-dg--~i~iw~~~~ 663 (1134)
|+|||+++++++.+|.+++|.++ ++. ...+..+ ...+..+ .|+|||+.|+..+. ++ .+++|++..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999988888899988887765 344 5555433 3356676 59999997765544 44 889998753
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=4.5e-23 Score=257.52 Aligned_cols=328 Identities=10% Similarity=0.012 Sum_probs=238.5
Q ss_pred cCCeeEEEEecCCCcEEEEEEcC-CC-----cEEEEECCCCeeeEEecCCCCC------------------------eEE
Q 001168 453 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEAP------------------------VYS 502 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~-d~-----~i~iwd~~~~~~~~~~~~h~~~------------------------v~~ 502 (1134)
...+.+++|+|||+ +|++++. |+ .|++||+.+++....+..+... |.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 8999999999887776654332 788
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001168 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
++|+|++ ++|++++. +.|++||+.++. ....+..+...+..++|+|||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 8998754 88888886 999999998873 4445666677899999999999999886 447999999998876
Q ss_pred EEecCccCc---------------ceEEEEEeCCCCEEEEEeCCC---------------------------------eE
Q 001168 581 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 612 (1134)
Q Consensus 581 ~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~~dg---------------------------------~i 612 (1134)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 654443321 146799999999999987665 88
Q ss_pred EEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-----CCcEEEEECCCchhhhhhccCCccccCCCCCCCC
Q 001168 613 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1134)
Q Consensus 613 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1134)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.++. ....+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~--------------- 328 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLA--------------- 328 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEE---------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEE---------------
Confidence 9999988 776554332223446889999 99999987764 4567777765541 00000
Q ss_pred CCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEec
Q 001168 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1134)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1134)
T Consensus 329 -------------------------------------------------------------------------------- 328 (741)
T 2ecf_A 329 -------------------------------------------------------------------------------- 328 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEE
Q 001168 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1134)
Q Consensus 767 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~ 846 (1134)
....++ . ...+.++
T Consensus 329 ----------------------~~~~~~-------------------------------------------~-~~~~~~~ 342 (741)
T 2ecf_A 329 ----------------------HETSPT-------------------------------------------W-VPLHNSL 342 (741)
T ss_dssp ----------------------EEECSS-------------------------------------------C-CCCCSCC
T ss_pred ----------------------EcCCCC-------------------------------------------c-CCcCCce
Confidence 000000 0 1123457
Q ss_pred EeccCCCEEEEEe-CCeEEEEEcC-CCeEEEEecCCCCceEEE-EEcCCCCcEEE-EEeCCC--cEEEEEcCC-ceEEEE
Q 001168 847 ALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNIIA-IGMEDS--SVQIYNVRV-DEVKTK 919 (1134)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~s~~~~~~la-sg~~dg--~i~iwd~~~-~~~~~~ 919 (1134)
+|+|||+++++++ +|.++||.++ +++ ...+..|...+..+ .|+| +++.|+ +++.++ .++||++.. ++....
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 8889988777777 7766676654 345 67787788888887 5999 777654 555555 899999874 555666
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCC----CcEEEEeCCCc
Q 001168 920 LKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 956 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iWd~~~~ 956 (1134)
+.. ...+.+++|||||++|+....+ ..+.+|+..++
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 765 6678899999999988876544 46889988654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.5e-23 Score=259.08 Aligned_cols=288 Identities=10% Similarity=0.082 Sum_probs=210.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc---CeEEEEECCCCCEEE
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLG 424 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~i~~spdg~~la 424 (1134)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 577899999998 5665 6799999999999875432 334443 499999999999999
Q ss_pred EEeCC---------CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001168 425 VAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 425 s~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
+++.+ +.+.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999998865 22222234555689999999999 6777774 7999999999887766655
Q ss_pred CCCCe------------------EEEEeeccCCccEEEEEecCC----------------------------------eE
Q 001168 496 HEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------KI 523 (1134)
Q Consensus 496 h~~~v------------------~~i~~~~~~~~~~l~s~~~d~----------------------------------~i 523 (1134)
+...+ .+++|+|++ +.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 789998755 8888887653 79
Q ss_pred EEEEccCCCceeEecCC------CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce----EE
Q 001168 524 KAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----GV 593 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 593 (1134)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887765555543 557899999999999877665444467899999999987776654433233 37
Q ss_pred EEEeCCCCEEEE--EeCCC------eEEEEE-CCCCee--EEEEeCCCCCCCcce-EEEccCCCEEEEEeCC---CcEEE
Q 001168 594 VQFDTTRNRFLA--AGDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIKI 658 (1134)
Q Consensus 594 ~~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~d~~~l~~~~~d---g~i~i 658 (1134)
++|+|||+.|+. +..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 899999997775 34666 577777 444441 3333321 123343 6899999999876665 78999
Q ss_pred EECCCc
Q 001168 659 LANSDG 664 (1134)
Q Consensus 659 w~~~~~ 664 (1134)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 987643
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=9e-23 Score=254.11 Aligned_cols=385 Identities=11% Similarity=0.065 Sum_probs=251.5
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc--ceEEEEEeCCCCEEEEEeCC---------Ce
Q 001168 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDE---------FQ 611 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~ 611 (1134)
.+.+++|+|||+++++ + .++.|++||..+++....+..+... .+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3678999999999988877766531 38899999999999998764 78
Q ss_pred EEEEECCCCeeEEEEeC-CCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCC
Q 001168 612 IKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 612 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++ +..+....+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~------------ 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGV------------ 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTT------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCc------------
Confidence 89999999876 33332 222334788999999999999886 79999999876 2222211110000
Q ss_pred cccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcc
Q 001168 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1134)
+..+ +.-|-.++ .
T Consensus 158 ------------------------------------------------~~~g----~~~~v~~e---------------e 170 (723)
T 1xfd_A 158 ------------------------------------------------IYNG----LSDWLYEE---------------E 170 (723)
T ss_dssp ------------------------------------------------EEEE----ECCHHHHH---------------T
T ss_pred ------------------------------------------------eECc----ccceeEEE---------------E
Confidence 0000 00000000 0
Q ss_pred cccceEEEEEecCCcceeeeecc-ceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001168 771 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
-...+.+++|||||+.|+.++.+ +.+.+|++.... + .+ ...+..+.|+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~~-~~~~~~~~~~ 219 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------SI-YPTVKPYHYP 219 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------SS-SCCCEEEECC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------cC-CCcceeccCC
Confidence 01235789999999999888765 466677653100 0 01 3347889999
Q ss_pred cCCCEEEEEeCCeEEEEEcCCCeEEEEecCC------CCceEEEEEcCCCCcEEEEEeC----CCcEEEEEcCCceEEEE
Q 001168 850 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 850 ~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~lasg~~----dg~i~iwd~~~~~~~~~ 919 (1134)
++|.. ..+..|++||+.+++....+..+ ...+..++||| ||++|++... +..|++||+.++++...
T Consensus 220 ~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88863 12468999999998865666654 56789999999 8988877653 35799999999987766
Q ss_pred ecCc-ccce----EEEEEecCCCEEEEE--cCCC------cEEEEe-CCCcccccceeeecCCCCCCCCcCceE-EEEcC
Q 001168 920 LKGH-QNRI----TGLAFSPTLNALVSS--GADA------QLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETK-VQFHN 984 (1134)
Q Consensus 920 l~~h-~~~i----~~l~~s~d~~~l~s~--~~D~------~i~iWd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~fsp 984 (1134)
+..+ ...+ ..++|||||+.|+.. ..++ .|.+|| ..+++......+. .++ ..+.. ++|+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~----~~~~~~~~~sp 369 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGD----WDVTKILAYDE 369 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSS----SCEEEEEEEET
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCC----eEEEeeeEEcC
Confidence 6443 3333 378999999987754 4566 567777 3443300001111 111 23444 69999
Q ss_pred CCcEEEE-EEC---CeEEEEeCC--Cc-cccccCCCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEeCCCcceeee
Q 001168 985 DQTHLLV-VHE---SQISVYDSK--LE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-G--AIGVFDAETLRFRCR 1054 (1134)
Q Consensus 985 dg~~l~~-~~d---~~v~vwd~~--~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-g--~I~vwd~~~~~~~~~ 1054 (1134)
||++|+. +.+ +.+.+|++. +. ....+.....|...+..++|||||++|+..... + ...+++..++..+..
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 449 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence 9999987 443 678999983 22 222232211246678999999999988765432 2 244556666555443
Q ss_pred c
Q 001168 1055 I 1055 (1134)
Q Consensus 1055 ~ 1055 (1134)
+
T Consensus 450 ~ 450 (723)
T 1xfd_A 450 L 450 (723)
T ss_dssp E
T ss_pred e
Confidence 3
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.6e-21 Score=217.31 Aligned_cols=281 Identities=10% Similarity=0.077 Sum_probs=207.6
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeC-CC
Q 001168 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 430 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~-dg 430 (1134)
..|.+++..++++++.++.|.+||..+++.+.. +..+...+ +++|+|||+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999876543 22344556 9999999997777665 89
Q ss_pred eEEEEEcCCCCc-ccceeEeecccCCeeEEEEecCCCcEEEEEEcCC-C--cEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001168 431 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-K--MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 431 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
.|.+||..+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998875 33 4555666666699999999 66655544 3 8999999999988887644 456899998
Q ss_pred ccCCccEEEEEecCCe-EEEEEccCCCcee----EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--
Q 001168 507 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 579 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1134)
|++. .++++...++. |.+|+++...... ...........++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8652 24555566688 9999998655432 22234456899999999998776653 467899999999888
Q ss_pred -EEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCee--EEEEeCC--CCCCC---cceEEEccCCCEEEEE
Q 001168 580 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLPA---SPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 580 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~~~~s~d~~~l~~~ 650 (1134)
+..+.... .+..++|+|+|+++++++ .++.|.+||+.+++. +..+... ..... ...++|+|||++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776543 577899999999877654 578899999999887 4444322 11112 2458999999988766
Q ss_pred eC-CCcEEEEECCCc
Q 001168 651 TS-DNGIKILANSDG 664 (1134)
Q Consensus 651 ~~-dg~i~iw~~~~~ 664 (1134)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=6.5e-22 Score=245.42 Aligned_cols=358 Identities=11% Similarity=0.083 Sum_probs=233.2
Q ss_pred eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecCCC-----------------CCeEEEEeeccCCccEEEEE
Q 001168 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHE-----------------APVYSVCPHHKESIQFIFST 517 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~i~~~~~~~~~~l~s~ 517 (1134)
+..+.|. |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|+|+ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 5667888 55 466666677 8 9999999873 4443333 56999999886 244444
Q ss_pred ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-----CeeEEEecCccCcc--
Q 001168 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-----GAIKRTYSGFRKRS-- 590 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~~-- 590 (1134)
.++.|++||+.+++.. .+..+...+.+++|+|||++|+++. ++.|++||+.+ ++.......+....
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3444556788899999999999863 57899999998 77665444433311
Q ss_pred -----------eEEEEEeCCCCEEEEEe---------------------------------CCCeEEEEECCCCeeEEEE
Q 001168 591 -----------LGVVQFDTTRNRFLAAG---------------------------------DEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 591 -----------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 626 (1134)
+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987 4578999999998865544
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCC-----cEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcc
Q 001168 627 DADGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1134)
....+...+..++|+|||+.|++++.++ .|++||+.++.. ...+.....
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~------------------------- 305 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETD------------------------- 305 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEEC-------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccC-------------------------
Confidence 3323334688999999999999887765 899999877621 111100000
Q ss_pred cccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEe
Q 001168 702 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT 781 (1134)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 781 (1134)
......+..++|+
T Consensus 306 -------------------------------------------------------------------~~~~~~~~~~~~s 318 (706)
T 2z3z_A 306 -------------------------------------------------------------------KHYVEPLHPLTFL 318 (706)
T ss_dssp -------------------------------------------------------------------SSCCCCCSCCEEC
T ss_pred -------------------------------------------------------------------CCeECccCCceee
Confidence 0001123467899
Q ss_pred c--CCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE-EEeccCCCEEEEE
Q 001168 782 N--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IALSKNDSYVMSA 858 (1134)
Q Consensus 782 ~--~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~-~~~s~dg~~la~~ 858 (1134)
| ||++++++..++.+++|.+.. ++..... +.. | ...+.. ++|+|||+.|+.+
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~---------------------~~~~~~~-l~~--~-~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDT---------------------TGRLIRQ-VTK--G-EWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEET---------------------TSCEEEE-CCC--S-SSCEEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEEEccCCccEEEEEEC---------------------CCCEEEe-cCC--C-CeEEEeeeEEcCCCCEEEEE
Confidence 9 999888888899999997641 1111111 111 3 556766 8999999988776
Q ss_pred e--CC----eEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC----CcEEEEEcCCceEEEEecCcccceE
Q 001168 859 S--GG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 859 s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d----g~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
+ ++ .|..||+.+++ ...+. +...+.+++||| ++++|+.+..+ +.|++||+.+++ ...+. +...+.
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~ 448 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDT 448 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC----
T ss_pred ecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhh
Confidence 5 44 67777877765 33444 677799999999 88887776443 569999999887 43333 444454
Q ss_pred EEEEecCCCEEEEEcCCC--cEEEEeC
Q 001168 929 GLAFSPTLNALVSSGADA--QLCMWSI 953 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~--~i~iWd~ 953 (1134)
...+.+.. .+-....|+ .+..|-.
T Consensus 449 ~~~~~~~~-~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 449 GYAMPEIR-TGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp --CCCCEE-EEEEECTTSSSEEEEEEE
T ss_pred hcCCCCcE-EEEEEcCCCCEEEEEEEE
Confidence 44443332 222233444 4555533
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=8.8e-21 Score=213.49 Aligned_cols=279 Identities=11% Similarity=0.096 Sum_probs=216.7
Q ss_pred EecCCCCeeEEEEecCCCeEEEEEeC------CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001168 342 TLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 342 ~l~h~~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.......+..++|+|+|+++++++.. ++.|.+||..+++.+.. +. ....+..++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~ 95 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGAT 95 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEE
Confidence 33445688999999999866555533 67999999998876543 11 234477899
Q ss_pred ECCCCCEEEEE-eCCCeEEEEEcCCCCcccceeEeecccC---------CeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001168 416 WGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 416 ~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
|+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||+.
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 99999966555 557999999999987654 3333322 2788999999995222222468899999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC----CCCcEEEEEECCCCCEEEEEee
Q 001168 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+++.+..+..+...+.+++|+|++ .++++++.++.|.+||+.+.+....+.. +...+..++|+|++++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 999998887666678889998755 7899999999999999998877766554 4556889999999998887753
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001168 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
.++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 367899999999998888776432 4689999999776655 78999999999999988887543 5689999
Q ss_pred ccCCCEEEEEeCCC
Q 001168 641 NKEGSLLAVTTSDN 654 (1134)
Q Consensus 641 s~d~~~l~~~~~dg 654 (1134)
+|||++|+++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999887776653
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.8e-21 Score=239.69 Aligned_cols=237 Identities=9% Similarity=-0.022 Sum_probs=169.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcc-cceeEeeccc-----------------CCeeEEEEecCCCcEEEEE
Q 001168 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 472 (1134)
Q Consensus 411 V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~~s~d~~~~~l~s 472 (1134)
+..+.|+ |+.+++++.++ | +||+.+++.+ . .+..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 5557888 66777777888 8 9999998763 3 222332 56999999999 5 3444
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-----CCceeEecCCCCc----
Q 001168 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 543 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~---- 543 (1134)
+ .++.|++||+.+++... +..+...+.+++|+|++ ++|+++ .|+.|++||+.+ ++...........
T Consensus 98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 4 35999999999887654 44567788889998855 788884 789999999988 6655433333332
Q ss_pred ----------EEEEEECCCCCEEEEEeeCC-----------------------------CCCCcEEEEeCCCCeeEEEec
Q 001168 544 ----------CTMMAYSADGTRLFSCGTSK-----------------------------EGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 544 ----------v~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
+.+++|+|||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135679999999988665543
Q ss_pred C-ccCcceEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEe-CC--CCCCCcceEEEcc--CCCEEEEEeCC
Q 001168 585 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-AD--GGLPASPRLRFNK--EGSLLAVTTSD 653 (1134)
Q Consensus 585 ~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~~~~s~--d~~~l~~~~~d 653 (1134)
. .....+.+++|+|||++|++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233688999999999999987665 89999999984333332 11 1112346789999 99999999999
Q ss_pred CcEEEEECC
Q 001168 654 NGIKILANS 662 (1134)
Q Consensus 654 g~i~iw~~~ 662 (1134)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 999999875
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.2e-21 Score=215.09 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=172.9
Q ss_pred CCceEEEEeccCCCEEEEEe-C-CeEEEEEcC--CCe--EEEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEc-
Q 001168 840 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV- 911 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~- 911 (1134)
...+.+++|+|||+++++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 66788899999999999887 4 899999998 554 444555444 789999999 888776665 4889999999
Q ss_pred --CCceEEEEecCcccceEEEEEecCCCEEEEEc-CCCcEEEEeCCC-cccccce--eeecCCCCCCCCcCceEEEEcCC
Q 001168 912 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 912 --~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
.+++.+..+..+ ..+.+++|+||+++|++++ .++.|.+||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 444555566544 4588999999999888777 899999999987 5432211 1222122 35788999999
Q ss_pred CcEEEEE--ECCeEEEEeCCC--ccc---ccc---CCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEeCC--Cc--c
Q 001168 986 QTHLLVV--HESQISVYDSKL--ECS---RSW---SPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAE--TL--R 1050 (1134)
Q Consensus 986 g~~l~~~--~d~~v~vwd~~~--~~~---~~~---~~~~~h~~~v~~v~~s~dg~~l~~-~~~dg~I~vwd~~--~~--~ 1050 (1134)
|++++++ .++.|.+|++.. ... ... .........+.+++|+|||++|++ +..++.|.+||+. ++ +
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 9988764 578999999932 211 111 111122346778999999998774 4578999999998 33 3
Q ss_pred eeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEe-CCCcEEEEecCC
Q 001168 1051 FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPSD 1101 (1134)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~~~~ 1101 (1134)
.+..+... ..+.+++|+| +|++|++++ .|+.|.+|++..
T Consensus 269 ~~~~~~~~-----------~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 269 KEGFQPTE-----------TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEECS-----------SSCCCEEECT-TSSEEEEECTTTCEEEEEEEET
T ss_pred EeeeecCC-----------CccceEEECC-CCCEEEEecCCCCeEEEEEEcC
Confidence 33333211 2256789999 778887777 689999996653
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.9e-20 Score=206.39 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=193.7
Q ss_pred CCeEEEEEeCCCcEEEEEccC-ccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCC-CeEEEE
Q 001168 358 QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLY 435 (1134)
Q Consensus 358 g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d-g~i~iw 435 (1134)
++.++++++.|+.|.+||+.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 344666668899999999963 321110 012366789999999999999998886 999999
Q ss_pred EcC--CCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC---CCeeeEEecCCCCCeEEEEeeccCC
Q 001168 436 TYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKES 510 (1134)
Q Consensus 436 d~~--~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~ 510 (1134)
+++ ++. ......+..+. .+.+++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|+|++
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg- 140 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN- 140 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-
Confidence 998 443 22223444333 7899999999993 33445568899999994 44455555543 458888998754
Q ss_pred ccEEEEEe-cCCeEEEEEccC-CCcee----EecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC--Cee--
Q 001168 511 IQFIFSTA-IDGKIKAWLYDY-LGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI-- 579 (1134)
Q Consensus 511 ~~~l~s~~-~d~~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~-- 579 (1134)
.++++++ .++.|++||+.+ ++... .... ....+..++|+|+++++++++. .++.|.+|++.. ++.
T Consensus 141 -~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 141 -RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp -SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred -CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 6777776 899999999987 43321 2222 3457889999999998876652 477899999953 433
Q ss_pred EEEecCcc-----CcceEEEEEeCCCCEEEEE-eCCCeEEEEECC--C--CeeEEEEeCCCCCCCcceEEEccCCCEEEE
Q 001168 580 KRTYSGFR-----KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 580 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 649 (1134)
...+.... ...+..++|+|++++++++ ..++.|++||+. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 1246679999999988754 478999999998 3 34444454432 3789999999998888
Q ss_pred Ee-CCCcEEEEECC
Q 001168 650 TT-SDNGIKILANS 662 (1134)
Q Consensus 650 ~~-~dg~i~iw~~~ 662 (1134)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999553
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2e-20 Score=208.38 Aligned_cols=284 Identities=12% Similarity=0.069 Sum_probs=194.1
Q ss_pred EEecCCcc-eeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEE
Q 001168 779 IYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 779 ~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
.|.+++.. +++...++.|.+||.. +++....... + ...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~---~-~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQITL---G-YDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEEC---C-CCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEEc---c-CCcc-eEEEcCCCCEEEE
Confidence 45555555 5666678999999764 3333222111 2 4455 9999999997777
Q ss_pred Ee--CCeEEEEEcCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCC---cEEEEEcCCceEEEEecCcccceEEEE
Q 001168 858 AS--GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1134)
Q Consensus 858 ~s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg---~i~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1134)
++ ++.|.+||+.+++. ...+..+..+..+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 68999999999887 777776666666699999 899888655553 8999999999988887754 4568999
Q ss_pred EecCCCEEEEE-cCCCc-EEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE--ECCeEEEEeC-CCcc
Q 001168 932 FSPTLNALVSS-GADAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS-KLEC 1006 (1134)
Q Consensus 932 ~s~d~~~l~s~-~~D~~-i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~-~~~~ 1006 (1134)
|+|||++|+++ ..++. |.+|++.....+.......... ...+..++|+|||++++++ .++.|.+||+ +++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999865554 55588 9999998644321111111111 1347899999999977774 4789999999 4554
Q ss_pred ---ccccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcce--eeecCCcccccccccCCCCccEEEeecCC
Q 001168 1007 ---SRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1080 (1134)
Q Consensus 1007 ---~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1134)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+.......... . .....++|+|
T Consensus 211 ~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~sp- 282 (331)
T 3u4y_A 211 ITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP-L--FGANQMALNK- 282 (331)
T ss_dssp CEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG-G--TTCCCEEECT-
T ss_pred cceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC-c--ccccceEECC-
Confidence 444432 35678899999999876655 478899999999887 33332110000000 0 0113478999
Q ss_pred CCCEEEEE-eCCCcEEEEecCCCc
Q 001168 1081 EPNQIALG-MSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1081 d~~~l~s~-~~Dg~v~vW~~~~~~ 1103 (1134)
|+++|+++ ..++.|.+|++....
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEecCCCCcEEEEEecCCc
Confidence 67777554 456799999998766
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=8.1e-21 Score=207.69 Aligned_cols=257 Identities=12% Similarity=0.110 Sum_probs=191.6
Q ss_pred EEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-CCc
Q 001168 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 442 (1134)
Q Consensus 364 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~-~~~ 442 (1134)
.++.|+.|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34678999999999876542 345888999999999999999986 78999999998 765
Q ss_pred ccceeEeecc-cCCeeEEEEecCCCcEEEEEEc--CCCcEEE--EECCCCeeeEEecCCCCCeEEEEeeccCCccEEE-E
Q 001168 443 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKV--WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 516 (1134)
Q Consensus 443 ~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~sg~--~d~~i~i--wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s 516 (1134)
.. ...+| ...+.+++|+||++ +|++++ .++.+.| |++.+++ ...+..+. .+..++|+|++ ..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 33344 46789999999999 677777 3344445 5545554 44554443 48889998765 6665 7
Q ss_pred EecCCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEE
Q 001168 517 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1134)
Q Consensus 517 ~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 594 (1134)
++.++.+++|+++.. .....+..+...+.+++|+|+++++++++. .++.+.+|++. .+..+..+..+.. .+.++
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344556667778999999999999887653 25567888775 4556666766654 78899
Q ss_pred EEeCCCCEEEEEeCC-----------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001168 595 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 595 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
+|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+|++|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999987765 569999999887644443222234688999999999998887753
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=5.9e-20 Score=205.16 Aligned_cols=301 Identities=10% Similarity=0.058 Sum_probs=204.7
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc--
Q 001168 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 587 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 587 (1134)
.++++++.++.|.+||+.+.+....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5789999999999999998877766654332 4788999999998776653 36789999999999887776432
Q ss_pred --CcceEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001168 588 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 588 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
...+..++|+|+|+++++++ .++.|++||+.+++.+..+... ..+..++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11466799999999998886 5799999999999988887653 246889999999988887 6
Q ss_pred CcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccc
Q 001168 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1134)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1134)
+.|.+||+.++ +....+..+... ....++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~--------------------------------------------------~~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWE--------------------------------------------------AETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTT--------------------------------------------------TTTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccC--------------------------------------------------CCceeC
Confidence 89999999887 333222211000 000112
Q ss_pred cCccccccccc-ccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCc
Q 001168 734 VDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1134)
Q Consensus 734 ~~~~~~~~~~~-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 812 (1134)
++++.+..... +.... .+.......++..... .....+.+||
T Consensus 183 ~dg~~l~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~-~~~~~v~~~d------------ 225 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMA------------------------TPFYTARKDIDPADPT-AYRTGLLTMD------------ 225 (337)
T ss_dssp CBCCCCCCCCTTTTEEE------------------------EEEEEEBTTSCTTSGG-GEEEEEEEEE------------
T ss_pred CCccEEeeeccCCCcee------------------------eeeecccccccccccc-ccccceEEEe------------
Confidence 22222221111 00000 0000111111111100 1112345554
Q ss_pred ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCC
Q 001168 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1134)
Q Consensus 813 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 892 (1134)
..+++.....+.. + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|
T Consensus 226 ----------~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~- 289 (337)
T 1pby_B 226 ----------LETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST- 289 (337)
T ss_dssp ----------TTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-
T ss_pred ----------CCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-
Confidence 4444433222222 4 5678899999999999988 799999999999988887643 4678999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCceEEEEecCcc
Q 001168 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1134)
Q Consensus 893 ~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~ 924 (1134)
++++|++++.++.|++||+.+++.+..+..+.
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 88888888999999999999999888876553
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=2.8e-19 Score=205.15 Aligned_cols=314 Identities=12% Similarity=0.114 Sum_probs=200.9
Q ss_pred cceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001168 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+..+++++++.++++++.++ +++|+......... . ......+...... ..+ .| ...|.+++|+|||
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~--~-~~~~~~~~~~~~~----~~~---~~-~~~v~~l~~spdg 104 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK--P-GDDPNKIVDKVQG----LLV---PM-KFPIHHLALSCDN 104 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC--T-TCCTTCEEECCCC----EEE---CC-SSCEEEEEECTTS
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc--c-ccCcccccccCcc----ccc---cC-CCcccEEEEcCCC
Confidence 4578899999999999988887 88887643211000 0 0000000000000 001 14 6789999999999
Q ss_pred CEEE----EEe-CCeEEEEEcCCC--------e---EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE
Q 001168 853 SYVM----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1134)
Q Consensus 853 ~~la----~~s-dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~ 916 (1134)
++|| +++ |+.|+|||+.++ + ....+.+|...|.+++|+|+++.+||+++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999998764 1 24567779999999999994489999999999999999999987
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC-CCCcCceEEEEcCCCcEEEEE--E
Q 001168 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTHLLVV--H 993 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg~~l~~~--~ 993 (1134)
+....+|...|.+++|+|+|++|++++.|++|++||+. ++.... +....... .....+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKV--IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEE--ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccc--ccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77778899999999999999999999999999999998 332211 11111100 001368999999999988773 3
Q ss_pred CC------eEEEEeCCCcc---c---cccCCC----CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcc--e-ee
Q 001168 994 ES------QISVYDSKLEC---S---RSWSPK----DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLR--F-RC 1053 (1134)
Q Consensus 994 d~------~v~vwd~~~~~---~---~~~~~~----~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vwd~~~~~--~-~~ 1053 (1134)
+| .+++|++.... . ..+... .+...+-..+.+-+|.+++++++. .+.|.|+...... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 38999993221 1 111110 011223334444488787666554 4446676643311 0 01
Q ss_pred ecC--CcccccccccCCCCccEEEeec--CCC------------CCEEEEEeCCCcEEEEecCC
Q 001168 1054 RIG--PSAYIPTYAVSNTAHPLVIAPH--PSE------------PNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1054 ~~~--~~~~~~~~~~~~~~~~~~~~~~--~~d------------~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.+. ....+|......+..++++++. ..+ --.|.+-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 111 1122233323344556655543 211 14677888999999998765
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=9.1e-20 Score=203.62 Aligned_cols=275 Identities=8% Similarity=0.011 Sum_probs=204.0
Q ss_pred EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc-CeEEEEECCCCCEEEE-EeCCCeEEEEEcC
Q 001168 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLGV-AFSKHIVHLYTYN 438 (1134)
Q Consensus 361 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~i~~spdg~~las-~~~dg~i~iwd~~ 438 (1134)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6788999999999999988765431 011222 4788999999987654 5567899999999
Q ss_pred CCCcccceeEeec---ccCCeeEEEEecCCCcEEEEEEc------------CCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001168 439 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 439 ~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~~~l~sg~------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
+++.+... .+.. |...+.+++|+|+|+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88765422 1111 123678899999999 566664 579999999999998877764 4567888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCC----------------
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 567 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1134)
+|+|++ .+++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 887754 667776 68999999998877665554331 112378999987765442 111
Q ss_pred -------cEEEEeCCCCeeEE-EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001168 568 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 568 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
.|.+||+.+++... .+..+.. .+.+++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999987752 2223332 67789999999999888 6899999999999888887542 468999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhcc
Q 001168 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
|+|+|++|++++.++.|.+||+.++ +.+..+.
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~ 318 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQVD 318 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEE
Confidence 9999999999999999999999988 4444443
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.5e-19 Score=202.73 Aligned_cols=244 Identities=11% Similarity=0.167 Sum_probs=167.9
Q ss_pred CCceEEEEeccCCCEEEEEe---CCeEEEEEcCCCe--EEEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcC-
Q 001168 840 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR- 912 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~- 912 (1134)
...+..++|+|||+++++.. ++.|.+||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 45677899999999444443 3789999998766 3444455677889999999 888888877 78999999996
Q ss_pred Cc--eEEEEecC---------cccceEEEEEecCCCEEEEEcCCCcEEEEeCC-CcccccceeeecCCCCCCCCcCceEE
Q 001168 913 VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 913 ~~--~~~~~l~~---------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..+
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~~ 192 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRHL 192 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCceE
Confidence 33 33333322 12348899999999977777778999999998 444221111122222 346789
Q ss_pred EEcCCCcEEEEE--ECCeEEEEeCCC--cccc---ccCCCC---CCCCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCc
Q 001168 981 QFHNDQTHLLVV--HESQISVYDSKL--ECSR---SWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 981 ~fspdg~~l~~~--~d~~v~vwd~~~--~~~~---~~~~~~---~h~~~v~~v~~s~dg~~l~-~~~~dg~I~vwd~~~~ 1049 (1134)
+|+|||++++++ .++.|.+|++.. ..+. .+.... .....+..++|+|||++|+ +...++.|.+|++...
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999987774 468899999832 2221 111111 1124588999999999874 5556899999999732
Q ss_pred ---ceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCC-CcEEEEecC
Q 001168 1050 ---RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1100 (1134)
Q Consensus 1050 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~D-g~v~vW~~~ 1100 (1134)
+.+..+.. +...+.+++|+| ||++|++++.+ +.|.+|++.
T Consensus 273 g~~~~~~~~~~----------~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 273 GHLTLIQQIST----------EGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GCEEEEEEEEC----------SSSCCCEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEeEEEec----------CCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEe
Confidence 23333321 124566899999 78888877765 899999654
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=5.3e-20 Score=222.18 Aligned_cols=272 Identities=15% Similarity=0.117 Sum_probs=197.8
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-cCeEEEEECCCCCEEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~spdg~~las 425 (1134)
.+|++++|||||++++.++..||++.||++.+++... +..|. ..|.+++|||| +.+++
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~~ 80 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVILV 80 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEEE
Confidence 4799999999999654444449999999987665432 33444 68999999999 77777
Q ss_pred EeC---CCeEEEEEcCC--CCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001168 426 AFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 426 ~~~---dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
++. +....+|.++. ..... .+.. ...+...+|+|||+.+++++++.++. .+||+.+++.......+ .
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~---~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~-~-- 152 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQ---RLEA-VKPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLP-G-- 152 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCE---ECTT-SCSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEES-S--
T ss_pred eccCCCCcceEEEEEeccCCCccc---cccC-CCCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCC-C--
Confidence 765 45566665543 22211 2222 22345779999998756666666655 49999998866544433 3
Q ss_pred EEEEeeccCCccEEEEEecC----CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001168 501 YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+.+
T Consensus 153 ~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTT
T ss_pred ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCC
Confidence 788888755 899988877 78999999877654 56777788999999999999995432 2334899999999
Q ss_pred CeeEEEecCccCcceEEEE--------EeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001168 577 GAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
++.. .+.++.. .+..++ |+|||..+++++.++.+++|++ ++.... . ...+.+++|+ ++++++
T Consensus 228 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 228 GSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp CCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEEE
T ss_pred CcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEEE
Confidence 8887 6666554 555566 9999988888999999999999 655441 1 2367899999 999998
Q ss_pred EEeCCCc---EEEEECC
Q 001168 649 VTTSDNG---IKILANS 662 (1134)
Q Consensus 649 ~~~~dg~---i~iw~~~ 662 (1134)
+++.+.+ +.+|+..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 8887644 5666544
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=4.2e-19 Score=199.69 Aligned_cols=273 Identities=8% Similarity=0.019 Sum_probs=203.2
Q ss_pred CcceeEeeCCCCCCccc--------------cCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc
Q 001168 314 QSDEVSFAGVAHTPNVY--------------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR 379 (1134)
Q Consensus 314 ~~~~v~~s~~g~~~~~~--------------~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~ 379 (1134)
....++++++|+.+.+. .+|..+++.+..+.....+.+++|+|+|+++++++..++.|.+||..++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 34556777776654433 3445567777777766778999999999977777788899999999998
Q ss_pred cccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe--CCCeEEEEEcCCCCcccceeEeecccCCee
Q 001168 380 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1134)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 457 (1134)
+.+...... ....+ .......+.+++|+|+|+++++++ .++.|.+||..+++... .+..+...+.
T Consensus 122 ~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~ 188 (353)
T 3vgz_A 122 EVKGRLVLD-----DRKRT-----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMST 188 (353)
T ss_dssp CEEEEEESC-----CCCCC-----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTCC
T ss_pred eeEEEEecC-----CCccc-----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCccc
Confidence 765431100 00000 000011278899999999888776 48899999999876554 4444556688
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC----CCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEccCCC
Q 001168 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLG 532 (1134)
Q Consensus 458 ~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~ 532 (1134)
+++|+|+++ .+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++ .++++++ .++.|.+||+.+++
T Consensus 189 ~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 189 GLALDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCEEETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCC
T ss_pred eEEECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCc
Confidence 999999999 788888899999999999998877654 55678889998865 5555554 55999999999888
Q ss_pred ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC
Q 001168 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1134)
....+..... ..++|+|+|++++++.. .++.|.+||..+++.+..+.... .+.+++|+|+|++++++..++
T Consensus 265 ~~~~~~~~~~--~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAAPES--LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECSSC--CCEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEcCCC--ceEEECCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 7766654432 56899999998776653 47789999999999988887654 578899999999887766543
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=8.6e-20 Score=199.45 Aligned_cols=257 Identities=9% Similarity=0.041 Sum_probs=188.6
Q ss_pred CCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC-ccccccccceeecccccccccccc
Q 001168 324 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 324 g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
+....++.+|...++......|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++....
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~------------------ 78 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV------------------ 78 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe------------------
Confidence 334455666666777777777899999999999998 556665 88999999998 764431
Q ss_pred ccccC-CcCeEEEEECCCCCEEEEEe--CCCeEEEE--EcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001168 403 LLNDA-AISVNRCVWGPDGLMLGVAF--SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 403 ~l~~h-~~~V~~i~~spdg~~las~~--~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
..+| ...|.+++|+|||++|++++ .++...|| +..++. .. .+..+ ..+.+++|+||++. ++++++.|+
T Consensus 79 -~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~ 151 (297)
T 2ojh_A 79 -DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQ 151 (297)
T ss_dssp -CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETT
T ss_pred -ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCC
Confidence 2233 46789999999999999998 33445555 545543 22 33333 35899999999994 334788899
Q ss_pred cEEEEECC-CCeeeEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcc-CCCceeEecCCCCcEEEEEECCCCC
Q 001168 478 MIKVWDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 478 ~i~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
.++||++. .+.....+..|...+.+++|+|++ .+++.++ .++.+++|+++ .......+..+...+.+++|+|+|+
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 152 VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp EEEEEEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred ceEEEEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 99999863 233446677788899999998855 6676655 59999999987 4555666777777899999999999
Q ss_pred EEEEEeeCCC-------CCCcEEEEeCCCCeeEE--EecCccCcceEEEEEeCCCCEEEEEeCCC
Q 001168 555 RLFSCGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1134)
Q Consensus 555 ~l~~~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1134)
+|++++.+.. .+..|++||+.+++... .+.++.. .+.+++|+|++++|++++.+.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 9998875321 23679999999886543 3435554 788899999999998877543
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6.7e-20 Score=227.68 Aligned_cols=277 Identities=10% Similarity=0.073 Sum_probs=195.1
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc---CeEEEEECCCCCEEEEEe
Q 001168 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~i~~spdg~~las~~ 427 (1134)
.++|+|||+ +++++ .||+|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 679999995 66654 599999999999875432 223332 489999999999999987
Q ss_pred C---------CCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCC
Q 001168 428 S---------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHE 497 (1134)
Q Consensus 428 ~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~ 497 (1134)
. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. |+.|++||+.+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999988652101 12 25689999999999 677765 789999999888765432 2333
Q ss_pred CCe-----------------EEEEeeccCCccEEEEEecCC----------------------------------eEEEE
Q 001168 498 APV-----------------YSVCPHHKESIQFIFSTAIDG----------------------------------KIKAW 526 (1134)
Q Consensus 498 ~~v-----------------~~i~~~~~~~~~~l~s~~~d~----------------------------------~i~~w 526 (1134)
..| .+++|+|++ ++|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNG--KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTS--SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCC--CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 478898754 8999887652 78899
Q ss_pred EccCCCce--eE------ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe----CCCCeeEEEe----cCccCcc
Q 001168 527 LYDYLGSR--VD------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN----ESEGAIKRTY----SGFRKRS 590 (1134)
Q Consensus 527 d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd----~~~~~~~~~~----~~~~~~~ 590 (1134)
|+.+++.. .. +..+...+..++|+||++.+++.....++...|.+|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876642 11 2346678999999999877666443223345699999 8888766555 24433 4
Q ss_pred eE-----EEEEeCCCCEEEE--EeCCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC-----CcE
Q 001168 591 LG-----VVQFDTTRNRFLA--AGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-----NGI 656 (1134)
Q Consensus 591 v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-----g~i 656 (1134)
+. .+.|+|||+.++. ...+| .|++||+.+++ ...+..+ ...+..+.++ +++.|+..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 55 7889999986654 33444 57778887766 3334322 2246677777 88887777665 778
Q ss_pred EEEECC
Q 001168 657 KILANS 662 (1134)
Q Consensus 657 ~iw~~~ 662 (1134)
++|.+.
T Consensus 385 ~l~~~~ 390 (719)
T 1z68_A 385 NIYRIS 390 (719)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888764
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.7e-18 Score=194.04 Aligned_cols=274 Identities=13% Similarity=0.109 Sum_probs=190.8
Q ss_pred CCCccccCccccceE--EEEecCCCCeeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccccceeecccccccccc
Q 001168 325 HTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1134)
Q Consensus 325 ~~~~~~~~~~~~~~~--~~~l~h~~~V~~v~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1134)
..+.+|.+|..+++. +....+...+..++|||||+ +++++.. ++.|.+|++.+++.....
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~--------------- 79 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN--------------- 79 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE---------------
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee---------------
Confidence 345566777665554 33445667889999999998 6666543 689999999776532110
Q ss_pred ccccccCCcCeEEEEECCCCCEEEEEe-CCCeEEEEEcCCCCcccceeEeec---------ccCCeeEEEEecCCCcEEE
Q 001168 401 NALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLCI 470 (1134)
Q Consensus 401 ~~~l~~h~~~V~~i~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~~~~---------h~~~v~~l~~s~d~~~~~l 470 (1134)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ ++
T Consensus 80 --~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~ 155 (347)
T 3hfq_A 80 --TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LA 155 (347)
T ss_dssp --EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EE
T ss_pred --eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EE
Confidence 1234677889999999999999887 689999999964433333223321 122488999999999 78
Q ss_pred EEEcCCCcEEEEECC-CCeeeE--EecCC-CCCeEEEEeeccCCccEEEE-EecCCeEEEEEccC--CCce--eEecCCC
Q 001168 471 VTCGDDKMIKVWDVV-AGRKQY--TFEGH-EAPVYSVCPHHKESIQFIFS-TAIDGKIKAWLYDY--LGSR--VDYDAPG 541 (1134)
Q Consensus 471 ~sg~~d~~i~iwd~~-~~~~~~--~~~~h-~~~v~~i~~~~~~~~~~l~s-~~~d~~i~~wd~~~--~~~~--~~~~~~~ 541 (1134)
+++..++.|.+||+. +++... .+..+ ...+..++|+|++ +++++ ...++.|.+|+++. ++.. ..+....
T Consensus 156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 233 (347)
T 3hfq_A 156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP 233 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence 888889999999998 554332 22222 3367789998754 65544 56789999999885 2221 1222211
Q ss_pred ------CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-C--eeEEEecCccCcceEEEEEeCCCCEEEEEeC-CCe
Q 001168 542 ------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQ 611 (1134)
Q Consensus 542 ------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 611 (1134)
..+..++|+|||++|+++.. .++.|.+|++.. + +.+..+..+.. .+..++|+|+|++|++++. ++.
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTE
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCc
Confidence 45889999999998876553 467899999873 2 45555555443 5788999999999888775 589
Q ss_pred EEEE--ECCCCeeEE
Q 001168 612 IKFW--DMDNMNMLT 624 (1134)
Q Consensus 612 i~iw--d~~~~~~~~ 624 (1134)
|.+| |..+++...
T Consensus 310 v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 310 ATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEECTTTCCEEE
T ss_pred EEEEEEeCCCCeEEe
Confidence 9999 555666553
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=6.7e-20 Score=227.67 Aligned_cols=306 Identities=9% Similarity=0.069 Sum_probs=209.7
Q ss_pred ccccCccccceEEEEecCCC----CeeEEEEecCCCeEEEEEeC---------CCcEEEEEccCccccccccceeecccc
Q 001168 328 NVYSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEVGSRERLAHKPFKVWDISA 394 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~----~V~~v~~spdg~~llasg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 394 (1134)
.++.++..+++....+.+.. .|.+++|||||++ |++++. ++.|++||+.+++.+....
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-------- 107 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-------- 107 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--------
T ss_pred CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECCCCcccccee--------
Confidence 34556666677777776432 4999999999995 555554 6899999999987632100
Q ss_pred ccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCe-----------------e
Q 001168 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-----------------N 457 (1134)
Q Consensus 395 ~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-----------------~ 457 (1134)
+ ...+.+++|||||++||++. ++.|++||+.+++..+. ...++...| .
T Consensus 108 ---------l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 108 ---------L---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp ---------C---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred ---------c---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeeeecccCcc
Confidence 1 24588999999999999985 78999999988765431 112332222 5
Q ss_pred EEEEecCCCcEEEEEEcCCC----------------------------------cEEEEECCCCeee--------EEecC
Q 001168 458 DIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVVAGRKQ--------YTFEG 495 (1134)
Q Consensus 458 ~l~~s~d~~~~~l~sg~~d~----------------------------------~i~iwd~~~~~~~--------~~~~~ 495 (1134)
+++|||||+ .|++++.|. .|++||+.+++.. ..+.+
T Consensus 173 ~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 173 ALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp CEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 899999999 677776542 7899999988753 22346
Q ss_pred CCCCeEEEEeeccCCccEEEEEecC----CeEEEEE----ccCCCceeEe----cCCCCcEE-----EEEECCCCCEEEE
Q 001168 496 HEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT-----MMAYSADGTRLFS 558 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d----~~i~~wd----~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~~ 558 (1134)
|...+..++|+|+ +.++++.... ..|.+|| +.+++....+ ..+...+. .++|+|||+.++.
T Consensus 251 ~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 251 SDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp SCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred CcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 8888999999886 4677664432 3488889 7665554444 35555565 7899999998776
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCC--Ce-eEEEEeC--
Q 001168 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDN--MN-MLTTVDA-- 628 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~~~~~-- 628 (1134)
...+.++...|++||+.+++ ...+..+.. .+..+.+. +++.++..+.+ +..++|.+.. +. ....+..
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~ 405 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHL 405 (719)
T ss_dssp EEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTT
T ss_pred EEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCcc
Confidence 54445566789999988776 445554433 56677777 88888776654 7888888754 32 1233321
Q ss_pred CCCCCCcceEEEccCCCEEEEEe-CC--CcEEEEECCCc
Q 001168 629 DGGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 664 (1134)
Q Consensus 629 ~~~~~~v~~~~~s~d~~~l~~~~-~d--g~i~iw~~~~~ 664 (1134)
.++...+..+.|+||+++++... .. ..+.+||+.++
T Consensus 406 ~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 406 RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 11223567899999998777543 32 46889998776
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2e-18 Score=198.03 Aligned_cols=259 Identities=14% Similarity=0.098 Sum_probs=176.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE--
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-- 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la-- 424 (1134)
..++.+++++++. ++++|+.+| ++||+........... .+... ...........+...|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 677788777 9998865321110000 00000 00000001123667899999999999999
Q ss_pred --EEeCCCeEEEEEcCCC--------CcccceeEeecccCCeeEEEEecC-CCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001168 425 --VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 425 --s~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999998764 222223456689999999999998 55 8999999999999999999877777
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-------CCcEEEEEECCCCCEEEEEeeCC---
Q 001168 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK--- 563 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~--- 563 (1134)
.+|...|.+++|+|+ |.+|++|+.||+|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 789999999999886 4899999999999999998 4444444332 22899999999988877654321
Q ss_pred CCCCcEEEEeCCCCe-----eEEEec-------CccCcceEEEEEeCCCCEEEEEe-CCCeEEEEEC
Q 001168 564 EGESHLVEWNESEGA-----IKRTYS-------GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDM 617 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 617 (1134)
+....+++|++...+ ....+. +... +...+.+-++.+.+++++ ..+.|.+...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999987542 112221 1111 222344447777777655 4444555554
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=3.8e-18 Score=194.69 Aligned_cols=301 Identities=10% Similarity=-0.001 Sum_probs=199.6
Q ss_pred cccceEEEEec-CCCCeeE-----EEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeeccccccccccccccc
Q 001168 334 DLTKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1134)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~-----v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1134)
..++..+..+. |...+.. ++|||||+++++++..+| .|.+||+.+++.... ..
T Consensus 17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~ 77 (388)
T 3pe7_A 17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TE 77 (388)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CC
T ss_pred CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------ee
Confidence 34455555555 5555555 899999996665554467 488889888765432 34
Q ss_pred cCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEE--EecCCCcEEEEE-----------
Q 001168 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVT----------- 472 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~~~l~s----------- 472 (1134)
++...+..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~ 152 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPL 152 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCC
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccc
Confidence 555566678899999999999999999999999986543 3334555454444 489998 5553
Q ss_pred -----------EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec-cCCccEEEEEecC------CeEEEEEccCCCce
Q 001168 473 -----------CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSR 534 (1134)
Q Consensus 473 -----------g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~~~d------~~i~~wd~~~~~~~ 534 (1134)
.+.+..|.+||+.+++.. .+..+...+..++|+| ++ ..|+.++.+ ..|.++|.......
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 153 TDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred cccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 234578999999998754 4445677889999988 54 777776653 36777887655443
Q ss_pred eEecCCC-CcEEEEEECCCCCEEEEEeeCC-CCCCcEEEEeCCCCeeE--EEecCccC--cceEEEEEeCCCCEEEEE--
Q 001168 535 VDYDAPG-NWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIK--RTYSGFRK--RSLGVVQFDTTRNRFLAA-- 606 (1134)
Q Consensus 535 ~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~l~~~-- 606 (1134)
....... ..+..++|+|||+.|+..+... ..+..|++||+.+++.. ..+.++.. .......|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3333222 3578899999999887655421 11234999999988743 33333110 001123699999888753
Q ss_pred -------eCCCeEEEEECCCCeeEEEEeCCCCCC--------CcceEEEccCCCEEEEEeC-CCcEEEEEC
Q 001168 607 -------GDEFQIKFWDMDNMNMLTTVDADGGLP--------ASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1134)
Q Consensus 607 -------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~s~d~~~l~~~~~-dg~i~iw~~ 661 (1134)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999887654433322100 3678899999998887664 666666654
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=2.9e-18 Score=212.52 Aligned_cols=380 Identities=10% Similarity=0.017 Sum_probs=241.3
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcc----eEEEEEeCCCCEEEEEeCC---------
Q 001168 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDE--------- 609 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d--------- 609 (1134)
...+++|+|||++++++ ++.|++||+.+++....+.++.... ...++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 35578999999888874 5679999999999888777765321 2347899999999998865
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCC
Q 001168 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1134)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1134)
+.+++||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++....-+..++...+
T Consensus 92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~----------- 156 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII----------- 156 (740)
T ss_dssp EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE-----------
T ss_pred eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccce-----------
Confidence 567799999988654 322 234688999999999999885 67999999887721111111110000
Q ss_pred CcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCc
Q 001168 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1134)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~ 769 (1134)
..+. .--+|.-+
T Consensus 157 --------------------------------------------------~~g~--~~~v~~ee---------------- 168 (740)
T 4a5s_A 157 --------------------------------------------------YNGI--TDWVYEEE---------------- 168 (740)
T ss_dssp --------------------------------------------------EESB--CCHHHHHH----------------
T ss_pred --------------------------------------------------ecCc--ccccccch----------------
Confidence 0000 00000000
Q ss_pred ccccceEEEEEecCCcceeeeecc-ceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe
Q 001168 770 IAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1134)
Q Consensus 770 ~~~~~v~~~~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~ 848 (1134)
--.....+.|||||+.|+....| +.+.+|++..... .. .+ ...+..+.+
T Consensus 169 -~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~-~~~~~~~~y 218 (740)
T 4a5s_A 169 -VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQ-YPKTVRVPY 218 (740)
T ss_dssp -TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CS-SCEEEEEEC
T ss_pred -hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CC-CCcceeecC
Confidence 00223468999999999888766 4488887532110 00 02 455677888
Q ss_pred ccCCCEEEEEeCCeEEEEEcCC---C---eEEEEec-----CCCCceEEEEEcCCCCcEEEEEeC----CCcEEEEEcCC
Q 001168 849 SKNDSYVMSASGGKVSLFNMMT---F---KVMTMFM-----SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRV 913 (1134)
Q Consensus 849 s~dg~~la~~sdg~i~vwd~~~---~---~~~~~~~-----~~~~~i~~l~~s~~~~~~lasg~~----dg~i~iwd~~~ 913 (1134)
.+.|..-. ..+|++||+.+ + +...... +|...+..++||| |+++++.... +..|++||+.+
T Consensus 219 p~~G~~~~---~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 219 PKAGAVNP---TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CBTTSCCC---EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CCCcCcCC---eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCC
Confidence 87775311 24799999998 7 4433322 3777899999999 8887666543 34799999998
Q ss_pred ce----EEE--Ee--cCcccceE-----EEEEecCCCEEE-EEcC-C--CcEEEEeCCCcccccceeeecCCCCCCCCcC
Q 001168 914 DE----VKT--KL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1134)
Q Consensus 914 ~~----~~~--~l--~~h~~~i~-----~l~~s~d~~~l~-s~~~-D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1134)
++ +.. .+ .+|...|. .++|+|||+.|+ ..+. + ..|.+||+.+++.. ....+. ..
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~----~~ 365 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT----WE 365 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS----SC
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC----EE
Confidence 87 322 22 45655544 789999999877 6653 3 46888898876532 222221 23
Q ss_pred ceEEEEcCCCcEEEE-EEC-----C--eEEEEeCCCcccc-ccCCC-CCCCCCeEEEEEccCCCEEEEEecC---CcEEE
Q 001168 977 ETKVQFHNDQTHLLV-VHE-----S--QISVYDSKLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIGV 1043 (1134)
Q Consensus 977 v~~~~fspdg~~l~~-~~d-----~--~v~vwd~~~~~~~-~~~~~-~~h~~~v~~v~~s~dg~~l~~~~~d---g~I~v 1043 (1134)
+..+. ++|++.++. +.. + .|...++.+.... .+... .+.......+.||||+++++..... ..+.+
T Consensus 366 v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l 444 (740)
T 4a5s_A 366 VIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (740)
T ss_dssp EEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEE
Confidence 44443 355777766 432 2 4555555444332 22211 1224578899999999987655433 36888
Q ss_pred EeCCCcceeeec
Q 001168 1044 FDAETLRFRCRI 1055 (1134)
Q Consensus 1044 wd~~~~~~~~~~ 1055 (1134)
++..+++.+..+
T Consensus 445 ~~~~~~~~~~~l 456 (740)
T 4a5s_A 445 HSSVNDKGLRVL 456 (740)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCcEEEEe
Confidence 998887765544
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=8.8e-18 Score=208.21 Aligned_cols=274 Identities=11% Similarity=0.094 Sum_probs=184.3
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-----cCeEEEEECCCCCE
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-----ISVNRCVWGPDGLM 422 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-----~~V~~i~~spdg~~ 422 (1134)
...+++|+|||+ +++++ ||+|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 466899999997 67775 99999999999875431 23333 23345899999999
Q ss_pred EEEEeCC---------CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-
Q 001168 423 LGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT- 492 (1134)
Q Consensus 423 las~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~- 492 (1134)
|++++.+ +.+.+||+.+++.. .+..|...+..++|||||+ .||.+. |+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 56779999998643 3556778899999999999 567664 78999999988875432
Q ss_pred ecCCCCCe-----------------EEEEeeccCCccEEEEEecCCe-EEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001168 493 FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 493 ~~~h~~~v-----------------~~i~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
..++...+ .++.|+|+ |+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD--g~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCC--CCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 34788775 488888876655 8888764322110 2334566777777664
Q ss_pred EEEEEeeCCCCCCcEEEEeCCC---Ce--eEEEecC------ccCcceEEEEEeCCCCEEEEEe----CCCeEEEEECCC
Q 001168 555 RLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG------FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDN 619 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 619 (1134)
.. ....|++||+.+ ++ ....+.. +.. .+..++|+|||+.++... .+..|++||+.+
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 32 233599999998 73 2233332 333 788999999998766643 234799999998
Q ss_pred Ce----e--EEEE--eCCCCCCC---cceEEEccCCCEEE-EEeC-CC--cEEEEECCCc
Q 001168 620 MN----M--LTTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-DN--GIKILANSDG 664 (1134)
Q Consensus 620 ~~----~--~~~~--~~~~~~~~---v~~~~~s~d~~~l~-~~~~-dg--~i~iw~~~~~ 664 (1134)
++ + +..+ ..+..-.. ....+|+|||+.++ ..+. +| .|++|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 86 1 1112 22221111 23788999999877 6654 33 4666666543
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=4.6e-19 Score=213.99 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=177.0
Q ss_pred CCcCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCcccceeEeeccc-CCeeEEEEecCCCcEEEEEEcC---CCcEEE
Q 001168 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~---d~~i~i 481 (1134)
+..+|.+++|+|||++||+++. ||++.||++++++.. .+..|. ..+..++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 4567999999999999999887 999999999765432 344555 68999999999 5 6776664 455556
Q ss_pred EECCC---CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001168 482 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
|.+.. +... .+.... .+...+|+|++++..+++++.++.. +||+.+++.......+. .+++|+|||+++++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3332 443322 3446688888775566666555554 99998876555443333 78999999999998
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCCCCcc
Q 001168 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence 7764333467999999988765 5666655 789999999999999888888 8999999998877 44433 33566
Q ss_pred eEE--------EccCCCEEEEEeCCCcEEEEEC
Q 001168 637 RLR--------FNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 637 ~~~--------~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677 9999999999999999999998
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=2.5e-17 Score=185.71 Aligned_cols=302 Identities=9% Similarity=0.052 Sum_probs=188.3
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeC--CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC----CeEEEEECCC--Cee
Q 001168 551 ADGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNM 622 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~ 622 (1134)
+...+++.++.....++.|++|++ .+++.......+. .....++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~-~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV-ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC-SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC-CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 444566677655445667888865 4565443322233 266779999999999998875 7999998865 443
Q ss_pred E--EEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCC
Q 001168 623 L--TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1134)
Q Consensus 623 ~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
. .....+ ......+++ ++++|++++ .++.|.+|++..... +..+..... ..+.
T Consensus 90 ~~~~~~~~~--~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~------------------~~g~- 145 (361)
T 3scy_A 90 HLLNTQKTM--GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-LLPASDVIE------------------FKGS- 145 (361)
T ss_dssp EEEEEEECS--SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-BCSCSEEEE------------------CCCC-
T ss_pred EEeeEeccC--CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-CcccceeEE------------------ccCC-
Confidence 3 233322 224566677 888777776 578999999865411 111000000 0000
Q ss_pred cccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEE
Q 001168 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1134)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 779 (1134)
+ ..+...+...+.+++
T Consensus 146 ---------------------------------------------~-------------------~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 146 ---------------------------------------------G-------------------PDKERQTMPHLHCVR 161 (361)
T ss_dssp ---------------------------------------------C-------------------SCTTTCSSCCEEEEE
T ss_pred ---------------------------------------------C-------------------CCccccCCCcceEEE
Confidence 0 000011234568899
Q ss_pred EecCCcceeeee-ccceEEEeecccccCCCCCC-cccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEE
Q 001168 780 YTNSGLSLLALA-SNAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 780 ~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
|+|+|+++++++ .++.+.+|++.........+ .... +........ + ...+..++|+|||+++++
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEEE
Confidence 999999776655 47899999875321000000 0000 000000111 2 456789999999998877
Q ss_pred Ee--CCeEEEEEcCCCeE--EEEec---CCCCceEEEEEcCCCCcEEEEEeC--CCcEEEEEcC--Cce--EEEEecCcc
Q 001168 858 AS--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVR--VDE--VKTKLKGHQ 924 (1134)
Q Consensus 858 ~s--dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~~~~~lasg~~--dg~i~iwd~~--~~~--~~~~l~~h~ 924 (1134)
++ ++.|.+|++.+++. +..+. .+......++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. .
T Consensus 228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 76 78999999987754 23332 2345578999999 8888866665 4899999996 444 4445554 5
Q ss_pred cceEEEEEecCCCEEEEEc-CCCcEEEEeC--CCcc
Q 001168 925 NRITGLAFSPTLNALVSSG-ADAQLCMWSI--DKWE 957 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~--~~~~ 957 (1134)
..+.+++|+|||++|++++ .++.|.+|++ ++++
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 5688999999999888877 6788999655 4555
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=1.4e-18 Score=195.06 Aligned_cols=241 Identities=12% Similarity=0.079 Sum_probs=179.5
Q ss_pred EEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCC-CceEEEEEcCCCCcEE-EEEeCCCcEEEEEcCCceEEEEec
Q 001168 845 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~l-asg~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
.++++++++++++++ +++|.+||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788889999888 8999999999999988887543 2578999999 77755 555678999999999999887776
Q ss_pred Cc------ccceEEEEEecCCCEEEEEcCC------------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEc
Q 001168 922 GH------QNRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 922 ~h------~~~i~~l~~s~d~~~l~s~~~D------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++........ ... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCC----CcccceeEC
Confidence 33 2337899999999999998865 89999999986643321111 111 247889999
Q ss_pred CCCcEEEEEECCeEEEEeC-CCccccccCCCC------------------------------------------------
Q 001168 984 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD------------------------------------------------ 1014 (1134)
Q Consensus 984 pdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~------------------------------------------------ 1014 (1134)
|||+ ++++ ++.|.+||+ +++....+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 455999999 555444332211
Q ss_pred -----------------CCCCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEe
Q 001168 1015 -----------------ALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1076 (1134)
Q Consensus 1015 -----------------~h~~~v~~v~~s~-dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1134)
.+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..+... ..+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-----------HTYYCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------SCCCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------CCccceE
Confidence 0012456778889 99999888 889999999999887776422 2345789
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCCccccCC
Q 001168 1077 PHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1108 (1134)
Q Consensus 1077 ~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1108 (1134)
|+| ++++|++++.++.|.+||+.+++....+
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6777888888999999999888744433
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=4.4e-18 Score=190.93 Aligned_cols=280 Identities=10% Similarity=0.066 Sum_probs=190.1
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccc-cCCcCeEEEEECCCCCEEEE-EeC
Q 001168 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLMLGV-AFS 428 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~i~~spdg~~las-~~~ 428 (1134)
+++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457788886 788899999999999998876543 11 12225789999999997654 456
Q ss_pred CCeEEEEEcCCCCcccceeEeec-c-----cCCeeEEEEecCCCcEEEEEEcCC------------CcEEEEECCCCee-
Q 001168 429 KHIVHLYTYNPTGELRQHLEIDA-H-----VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRK- 489 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h-----~~~v~~l~~s~d~~~~~l~sg~~d------------~~i~iwd~~~~~~- 489 (1134)
++.|.+||+.+++... .+.. + ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8999999999876544 3322 2 23478999999999 67777654 8999999988543
Q ss_pred --eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC---------------------C---c
Q 001168 490 --QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------------N---W 543 (1134)
Q Consensus 490 --~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------------------~---~ 543 (1134)
+..+. +...+.+++|+|++ . +++++ +.|.+||+.+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 33444 34468888898765 6 55543 349999998887766554332 0 3
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE-EecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCe
Q 001168 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
...+++++++........ ....+..+|..+++... .+.... ..+..++|+| ++++++++ ++.|++||+.+++
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLT-ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCC-CcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 445667665532211000 01112234554443211 111122 2678899999 99999888 8899999999999
Q ss_pred eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhc
Q 001168 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
.+..+.... .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus 287 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 287 LIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp EEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred EEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 888886432 4679999999998888888999999999887 444444
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.2e-16 Score=179.92 Aligned_cols=245 Identities=12% Similarity=0.126 Sum_probs=171.3
Q ss_pred CCcCeEEEEECCCCCEEEEEeCC----CeEEEEEcCCC-CcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001168 407 AAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
+...+..++|+|||++|++++.+ +.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEE
Confidence 56678889999999999999875 79999998764 333333344445566777887 7773 4444557899999
Q ss_pred EECCCCeeeEEe------cC--------CCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEccCCCc------e------
Q 001168 482 WDVVAGRKQYTF------EG--------HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS------R------ 534 (1134)
Q Consensus 482 wd~~~~~~~~~~------~~--------h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~------~------ 534 (1134)
|++.....+..+ .+ +...+.+++|+|++ +++++++ .++.|++|+++.... .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 999754332211 11 12345789998755 6555544 589999999886542 1
Q ss_pred -eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCcc--CcceEEEEEeCCCCEEEEEeC-
Q 001168 535 -VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD- 608 (1134)
Q Consensus 535 -~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~- 608 (1134)
.........+..++|+|||++++++.. .++.|.+|++.+++. +..+.... ......++|+|||++|+++..
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 222334556789999999999887763 467899999987754 33332221 124678999999999877665
Q ss_pred -CCeEEEEECC--CCe--eEEEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECC
Q 001168 609 -EFQIKFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1134)
Q Consensus 609 -dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~ 662 (1134)
++.|.+|++. +++ .+..+.. + ..+..++|+|||++|++++ .++.|.+|++.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4899999996 444 3444443 2 3568999999999988887 57899997654
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.1e-17 Score=188.36 Aligned_cols=251 Identities=14% Similarity=0.099 Sum_probs=169.7
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEEcC-CCeEEEEecC-CCCceEEEEEcCCCCc--EEEEEe-------------C
Q 001168 840 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMS-PPPAATFLAFHPQDNN--IIAIGM-------------E 902 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~~~~--~lasg~-------------~ 902 (1134)
...+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ +++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346788999999999998884499999997 7776543321 112355689999 888 455553 6
Q ss_pred CCcEEEEEcC-CceEEEEec----CcccceEEEEEecCCCEEEEEc-CCCcEEEEeCC-CcccccceeeecCCCCCCCCc
Q 001168 903 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 903 dg~i~iwd~~-~~~~~~~l~----~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|++|+++ +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466544443 2556799999999999888765 46789999998 66532211111111 01 3
Q ss_pred CceEEEEcCCCcEEEEEE--CCeEEEEeCC---Cccc---cccCCC----CCCCC------CeEEEE-EccCCCEEEEEe
Q 001168 976 GETKVQFHNDQTHLLVVH--ESQISVYDSK---LECS---RSWSPK----DALPA------PISSAI-YSCDGLLVYAGF 1036 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~--d~~v~vwd~~---~~~~---~~~~~~----~~h~~------~v~~v~-~s~dg~~l~~~~ 1036 (1134)
.+..++|+|||++++++. ++.|.+|+++ ++.. ..+... .+|.. .+..++ |||||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998854 5789999762 3321 111111 12222 588999 999999988776
Q ss_pred cCC------cEEEEeCC-CcceeeecCCcccccccccCCCCccEEEeecCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001168 1037 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1102 (1134)
Q Consensus 1037 ~dg------~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~l~s~~~D-g~v~vW~~~~~ 1102 (1134)
.+. .|.+|++. +|+....... .+ .....+..++|+|. ||++|++++.+ ++|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~---~~----~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFL---SP----TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEE---EE----CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeee---ee----cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 533 89999996 5654321100 00 01123346778885 67899988865 89999998754
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.3e-17 Score=190.32 Aligned_cols=254 Identities=10% Similarity=0.014 Sum_probs=174.9
Q ss_pred cccCCcCeEE-----EEECCCCCEEEEEeC-CC--eEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcC
Q 001168 404 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1134)
Q Consensus 404 l~~h~~~V~~-----i~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~ 475 (1134)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4445544554 889999999999987 66 48888998876443 2335555666789999999 7888888
Q ss_pred CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe----------------------cCCeEEEEEccCCCc
Q 001168 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 533 (1134)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~----------------------~d~~i~~wd~~~~~~ 533 (1134)
++.|++||+.+++....+..+...+....+..+.++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877666666666555554455667776432 347899999988754
Q ss_pred eeEecCCCCcEEEEEECC-CCCEEEEEeeCCC--CCCcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeC-
Q 001168 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 608 (1134)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~- 608 (1134)
.. +..+...+..++|+| ||+.|+.+..... ....|.++|...+... .+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 43 334556789999999 9999987764221 1447888888765543 3333332 25778899999998766442
Q ss_pred C----CeEEEEECCCCeeEEEEeCCCCC---CCcceEEEccCCCEEEEE---------eCCCcEEEEECCCc
Q 001168 609 E----FQIKFWDMDNMNMLTTVDADGGL---PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 664 (1134)
Q Consensus 609 d----g~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~---------~~dg~i~iw~~~~~ 664 (1134)
+ +.|++||+.+++........... .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 2 23999999998754433222100 012334799999988754 44668999998876
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1.9e-16 Score=178.24 Aligned_cols=247 Identities=10% Similarity=0.081 Sum_probs=172.7
Q ss_pred CcCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CCCcccceeEeecccCCeeEEEEecCCCcEEEEEEc------------
Q 001168 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 474 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~------------ 474 (1134)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +...+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3468899999999999999888 99999997 664332 1111111 236679999999843355553
Q ss_pred -CCCcEEEEECC-CCeeeEEec----CCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcc-CCCcee--Eec--CCCC
Q 001168 475 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 542 (1134)
Q Consensus 475 -~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~--~~~--~~~~ 542 (1134)
.++.+.+|++. +|+....+. .+...+.+++|+|++ ++++++. .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 466554443 255679999998755 7777665 46899999998 554432 232 2356
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC--CCeeE---EEecCcc----C-c-------ceEEEE-EeCCCCEEE
Q 001168 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIK---RTYSGFR----K-R-------SLGVVQ-FDTTRNRFL 604 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l~ 604 (1134)
.+..++|+|||++++++.. .++.|.+|++. +++.. ..+.... . . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 35679998764 56542 2222111 1 1 377899 999999988
Q ss_pred EEeCC-C-----eEEEEECC-CCeeEEE---EeCCCCCCCcceEEEcc---CCCEEEEEeCC-CcEEEEECCCc
Q 001168 605 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTSD-NGIKILANSDG 664 (1134)
Q Consensus 605 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---d~~~l~~~~~d-g~i~iw~~~~~ 664 (1134)
+++.+ . .|.+|++. +++.... ...+. ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76532 2 89999996 5665432 32222 2457889999 89999998864 89999998654
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=9.4e-17 Score=183.68 Aligned_cols=300 Identities=9% Similarity=-0.023 Sum_probs=192.9
Q ss_pred ccceEEEEec-CCCC-----eeEEEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeecccccccccccccccc
Q 001168 335 LTKTVVRTLN-QGSN-----VMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~-----V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
.++..+..+. +... +.+++|||||++++++...+| .|.+||+.+++.... ..+
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~ 78 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEG 78 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCS
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecC
Confidence 4444455554 3223 788999999997666654433 688889888764321 122
Q ss_pred CCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeE-------------------EEEecCCCc
Q 001168 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQ 467 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~~s~d~~~ 467 (1134)
+......+.|||||++|+.++.++.|.+||+.+++... ....+...... ++|+|+++
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~- 154 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS- 154 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc-
Confidence 22223347899999999999999999999999876432 22223332222 34677777
Q ss_pred EEEEEE-----cCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeE
Q 001168 468 LCIVTC-----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVD 536 (1134)
Q Consensus 468 ~~l~sg-----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~ 536 (1134)
.++.+ ..+..|++||+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+........
T Consensus 155 -~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 155 -WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp -HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred -ceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 33332 45678999999988765444 46778899999882 22556655543 3688888875543332
Q ss_pred ecCC-CCcEEEEEECCCCCEEEEEeeCC-CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC-CCCEEEEEe------
Q 001168 537 YDAP-GNWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG------ 607 (1134)
Q Consensus 537 ~~~~-~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------ 607 (1134)
.... ...+..++|+|||++|+..+... ...+.|++||+.+++........ ... +.|+| +|+.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC---
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCccee
Confidence 2221 23688899999999888765421 11244999999988754433221 123 88999 999888754
Q ss_pred ----------CCCeEEEEECCCCeeEEEEeCCCCC--------CCcceEEEccCCCEEEEEeC-CCcEEEE--ECCCc
Q 001168 608 ----------DEFQIKFWDMDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKIL--ANSDG 664 (1134)
Q Consensus 608 ----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~s~d~~~l~~~~~-dg~i~iw--~~~~~ 664 (1134)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754433222110 02466899999998887765 4554555 44444
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=6.5e-16 Score=172.77 Aligned_cols=303 Identities=10% Similarity=0.087 Sum_probs=202.0
Q ss_pred cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee------CCCCCCcEEEEeCCCCeeEEEecCcc-----
Q 001168 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEGAIKRTYSGFR----- 587 (1134)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~~~~~~~~~~~----- 587 (1134)
.|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..+++.+.++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999888877766655444 8999999999998753 11225679999999999888876431
Q ss_pred CcceEEEEEeCCCCEEEEEeC--CCeEEEEECCCCeeEEE-EeCCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEECCC
Q 001168 588 KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~ 663 (1134)
......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 113556899999999998763 68999999999988877 54321 2235667765 6778888999999998764
Q ss_pred chhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccc
Q 001168 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
..+..... +.
T Consensus 183 ~g~~~~~~--~~-------------------------------------------------------------------- 192 (361)
T 2oiz_A 183 DGKVASQS--RS-------------------------------------------------------------------- 192 (361)
T ss_dssp TSSEEEEE--EC--------------------------------------------------------------------
T ss_pred CCcEeeec--cc--------------------------------------------------------------------
Confidence 21211000 00
Q ss_pred cccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccC
Q 001168 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
..+|+... .. ..+.+++++..++..+.++.+.++|+....... +..|..
T Consensus 193 ---~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~ 241 (361)
T 2oiz_A 193 ---KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSL 241 (361)
T ss_dssp ---CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEES
T ss_pred ---cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccc
Confidence 00111110 00 011124455555555556677777753211100 000111
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe------------CCeEEEEEcCCCeEEEEecCCCCceEEEEEcC
Q 001168 824 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
........... ......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+|
T Consensus 242 ~~~~~~~~~~~-----p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp 314 (361)
T 2oiz_A 242 LNDEDKAKNWV-----PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ 314 (361)
T ss_dssp CCHHHHHTTCE-----ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred cCccccccccc-----cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence 11000000000 01112378999988777653 2379999999999999998777 99999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCc--eEEEEecCcccceEEEEEecCCC
Q 001168 892 QDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
++++|+++.. ++|.+||..++ +.+..+..+......++++|||+
T Consensus 315 -dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 315 -QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 8889988876 99999999999 99999877778889999999986
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=1.5e-15 Score=169.69 Aligned_cols=301 Identities=13% Similarity=0.194 Sum_probs=196.3
Q ss_pred CCCCEEEEEeeC--CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC----------CCeEEEEECC
Q 001168 551 ADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMD 618 (1134)
Q Consensus 551 ~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~ 618 (1134)
++++++++.... .-.++.|++||..+++.+..+..... + .++|+|||+++++++. ++.|.+||..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~-p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN-G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE-E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC-C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 356666655421 11256899999999999888877654 3 7999999999999863 6789999999
Q ss_pred CCeeEEEEeCCC----CCCCcceEEEccCCCEEEEEeC--CCcEEEEECCCchhhhhh-ccCCccccCCCCCCCCCCCCc
Q 001168 619 NMNMLTTVDADG----GLPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRM-LEGRAMDKNRCPSEPISSKPL 691 (1134)
Q Consensus 619 ~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~--dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
+++.+..+.... .......++|+|||++|+++.. ++.|.+||+.++ +.+.. +...
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~----------------- 151 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAAA----------------- 151 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGGT-----------------
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecCC-----------------
Confidence 999988886431 1124678999999999998864 589999999877 32222 1100
Q ss_pred ccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCccc
Q 001168 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1134)
T Consensus 152 -------------------------------------------------------------------------------- 151 (361)
T 2oiz_A 152 -------------------------------------------------------------------------------- 151 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEecCC-cceeeeeccceEEEeecccccCCCCCCcccc-cCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001168 772 ASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATAN-VAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 772 ~~~v~~~~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
....+.+.|++ ..+++.+.||.+.+|++... ++.... ....+|+... .+ ..+.++
T Consensus 152 --~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~-----g~~~~~~~~~~~~~~~~---------------~~-~~~~~~ 208 (361)
T 2oiz_A 152 --GCWSVIPQPNRPRSFMTICGDGGLLTINLGED-----GKVASQSRSKQMFSVKD---------------DP-IFIAPA 208 (361)
T ss_dssp --TEEEEEECTTSSSEEEEEETTSSEEEEEECTT-----SSEEEEEECCCCSCTTT---------------SC-BCSCCE
T ss_pred --CcceeEEcCCCCeeEEEECCCCcEEEEEECCC-----CcEeeeccccceEcCCC---------------Cc-eEEEec
Confidence 00112334443 33455555666666654321 111100 0011222211 11 123346
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCe--EEEEecCCC----------CceEEEEEcCCCCcEEEEEeC-----------CCc
Q 001168 850 KNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPP----------PAATFLAFHPQDNNIIAIGME-----------DSS 905 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~--~~~~~~~~~----------~~i~~l~~s~~~~~~lasg~~-----------dg~ 905 (1134)
+++..++..+ ++.+.++|+.... ....+.... .....++|+| +++.+.++.. .+.
T Consensus 209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSE
T ss_pred ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCce
Confidence 7787777776 8899999987543 222221111 1112378999 6666655532 348
Q ss_pred EEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCcCceEEEEc
Q 001168 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 906 i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
|.+||+.+++.+..+..+. +.+++|+|||++|++++. ++|.+||..++ +.+.. + ...| .....++|+
T Consensus 288 v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~--i-~~~G-----~~P~~~~~~ 356 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT--I-EGAA-----EASLQVQFH 356 (361)
T ss_dssp EEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE--E-TTSC-----SSEEEEEEC
T ss_pred EEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE--e-ccCC-----CCcEEEEec
Confidence 9999999999999998887 899999999999998887 99999999998 63321 1 1122 346889999
Q ss_pred CCCc
Q 001168 984 NDQT 987 (1134)
Q Consensus 984 pdg~ 987 (1134)
|||+
T Consensus 357 p~G~ 360 (361)
T 2oiz_A 357 PVGG 360 (361)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9986
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=2.4e-16 Score=180.23 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=198.8
Q ss_pred EEccCCCceeEecCCCCc-----EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001168 526 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
.|..++.....+..+... +..++|+|||++|+..... +++..|++||+.+++......+... ....+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-ccccceECCCC
Confidence 355555555555444332 5678999999998877642 3456799999998876544333221 23347899999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCC
Q 001168 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999998877665553321 6677777766555544443321
Q ss_pred CCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccc
Q 001168 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEecCCcccccceEEEEEecCCcceeee-----eccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCC
Q 001168 761 IKALRLPDSIAASKVVRLIYTNSGLSLLAL-----ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 835 (1134)
.+.++|+++.++.. ..+..|.+||+. +++.... ..
T Consensus 146 ----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~-~~- 185 (396)
T 3c5m_A 146 ----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVI-HQ- 185 (396)
T ss_dssp ----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEE-EE-
T ss_pred ----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEee-cc-
Confidence 01133444444433 233455555542 2221111 11
Q ss_pred CCCCCCceEEEEecc-CCCEEEEEe-C------CeEEEEEcCCCeEEEEecCC--CCceEEEEEcCCCCcEEEEEeCC--
Q 001168 836 SKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED-- 903 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~-dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~d-- 903 (1134)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++... +..+ ...+..++|+| ++++|+.++.+
T Consensus 186 --~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 260 (396)
T 3c5m_A 186 --D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIP-DGSAMAYVSYFKG 260 (396)
T ss_dssp --E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECT-TSSCEEEEEEETT
T ss_pred --C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECC-CCCEEEEEecCCC
Confidence 2 56688899999 888777765 2 368999987665433 3333 23588899999 88877776544
Q ss_pred ---CcEEEEEcCCceEEEEecCcccceEEEEEec-CCCEEEEEc----------------CCCcEEEEeCCCccccccee
Q 001168 904 ---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSRF 963 (1134)
Q Consensus 904 ---g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~----------------~D~~i~iWd~~~~~~~~~~~ 963 (1134)
+.|++||+.+++........ ... ++|+| ||+++++++ .+..|++||+.+++.. .
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~ 334 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---K 334 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---E
T ss_pred CccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---E
Confidence 45999999888654332211 123 89999 999888754 3478999999887642 1
Q ss_pred eecCCCCC-----CCCcCceEEEEcCCCcEEEEEE--CCe--EEEEeCCCcc
Q 001168 964 IQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQ--ISVYDSKLEC 1006 (1134)
Q Consensus 964 ~~~~~~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~--v~vwd~~~~~ 1006 (1134)
+....... .....+..++|+|||++|+... ++. |.++++.+..
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 335 LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 22111100 0001245678999999988853 344 4444544433
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=8e-15 Score=158.93 Aligned_cols=241 Identities=10% Similarity=0.105 Sum_probs=179.2
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecC------CCCceEEEEEc-CCCCcEEEEEeC-CCcEEEEE
Q 001168 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFH-PQDNNIIAIGME-DSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s-~~~~~~lasg~~-dg~i~iwd 910 (1134)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEEC
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEEC
Confidence 56689999999999888876 8999999987 666666642 34578999995 6 7777776643 88999999
Q ss_pred cCCceEEEEec-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEE
Q 001168 911 VRVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 911 ~~~~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
.+++.+..+. .+...+.+++++|+|+++++...++.|.+||... +... .+.. .++. ..+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTTC---SSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCcc---CCcEEEEECCCCCEE
Confidence 5677776664 3446789999999999888888889999999653 3221 1111 1111 357899999999977
Q ss_pred EEE-ECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCcceeeecCCcccccccccC
Q 001168 990 LVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVS 1067 (1134)
Q Consensus 990 ~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1134)
++. .++.|.+||.+++.+..+.. .++...+.+++++++|+++++...++ .|.+||. +++.+..+..+ .
T Consensus 179 v~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~--------~ 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------V 248 (286)
T ss_dssp EEEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------S
T ss_pred EEECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------C
Confidence 774 57899999997776665533 23346789999999999888887776 9999995 46666655422 1
Q ss_pred CCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCC
Q 001168 1068 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
....+.+++++| +|+++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 224567899999 7777777 67999999997653
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1.5e-13 Score=161.07 Aligned_cols=189 Identities=13% Similarity=0.084 Sum_probs=144.4
Q ss_pred EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc--CCCceeEecCCCCcEE
Q 001168 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~ 545 (1134)
+++++...++.|.++|..+++.+.++... ..+..+.++|+ |.++++++.|+.|.+||+. +.+....+.. +....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 37888899999999999999999888643 35678888775 4899999999999999995 6666655554 44568
Q ss_pred EEEEC----CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc----------CcceEEEEEeCCCCEEEE-EeCCC
Q 001168 546 MMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFDTTRNRFLA-AGDEF 610 (1134)
Q Consensus 546 ~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~-~~~dg 610 (1134)
.++|+ |||++++++.. ..+++.++|..+.+.+..+.... ...+..+..++++..++. ...+|
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred eeEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 99999 69999998875 46789999999999888765321 225677888888766554 55789
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCc
Q 001168 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~ 664 (1134)
.|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|..++
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred eEEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 999999987654333222111 2456889999999887765 4789999998776
No 173
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.68 E-value=1.2e-10 Score=145.44 Aligned_cols=587 Identities=11% Similarity=0.073 Sum_probs=341.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++.-.++|. |- .|+.+| +..||-.+ |+.+...... . ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~~---~---~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGYA--------FTVYQHNEDD---P---NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSSC--------EEEECCCTTC---T---TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCCc--------eEEEeCCCCC---C---CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33 466565 56666322 1111110000 0 001245799999999987655
Q ss_pred EeCCCeEEEEEcCCCCcccceeEeecccC----CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC-CCC-
Q 001168 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 499 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~- 499 (1134)
|+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 899998765321 2221111 288998888886 444 343 56899998776543211111 123
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001168 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
|.++..... ..+..++.++.|..||..+.+..... ......|.++...+++...+... ..-|.+||..+++
T Consensus 175 i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQG---DQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEET---TEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCC---CCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 777776543 24555666666888987765543221 12345788888888887666542 2238999988766
Q ss_pred eEEEecC------ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCCcceEEEccCCCEE
Q 001168 579 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l 647 (1134)
....... .....|.++...++|...+.. .+ -|.+||..+++........ -....|.++...++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l- 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM- 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-
Confidence 5433221 112368999998888765544 44 5889998877654332211 11246888999888874
Q ss_pred EEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCC
Q 001168 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1134)
-.|+.++-|..|+..++ . +..+.....
T Consensus 324 Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp EEEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred EEEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 45777778888876443 1 111100000
Q ss_pred CCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCC
Q 001168 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1134)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~ 807 (1134)
+.......|.++...++|. |-.++.++-+..|+......
T Consensus 351 ---------------------------------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~- 389 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF- 389 (795)
T ss_dssp ---------------------------------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE-
T ss_pred ---------------------------------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE-
Confidence 0000234578888888887 55566665677776432111
Q ss_pred CCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEec----CCCC
Q 001168 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM----SPPP 882 (1134)
Q Consensus 808 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~----~~~~ 882 (1134)
..+....+. ....-. ...|.+++..++|+.|-+|. ++.|.+||..+++...... .+..
T Consensus 390 -----------~~~~~~~~~-----~~~~l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~ 452 (795)
T 4a2l_A 390 -----------TSYTLQEDE-----SARGIG-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNE 452 (795)
T ss_dssp -----------EEECCC-----------CCS-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred -----------EEEecCCCC-----cccCCC-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCC
Confidence 000000000 000001 46799999999999444455 6789999998876544322 1345
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC------cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001168 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
.|.++...+ ++.+.+ |+. +-+.+||..+++....... ....|.++...++|++.+... + -|..||..++
T Consensus 453 ~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~ 527 (795)
T 4a2l_A 453 NVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGL 527 (795)
T ss_dssp CEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETT
T ss_pred eeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCC
Confidence 799999988 677665 445 4588999887765432211 235789999999998777654 4 4888998775
Q ss_pred ccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCCccccccCCCCCC-CCCeEEEEEccCCCEEEEE
Q 001168 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~~~ 1035 (1134)
+. . ..............|.++...++|++.+.+.. .+..||........+....+. ...|.++...++|.+.+++
T Consensus 528 ~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 528 DI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp EE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred eE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 53 1 11000000011146788999999997776554 788999855555444332222 3468999999999866554
Q ss_pred ecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001168 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
++-|..|+..+++.. .+....-++ ......-++...+ +|++++ |+.+| +..++..
T Consensus 604 --~~Gl~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 604 --NRGISCFNPETEKFR-NFTESDGLQ----SNQFNTASYCRTS-VGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp --TTEEEEEETTTTEEE-EECGGGTCS----CSCEEEEEEEECT-TSCEEE-EETTE-EEEECGG
T ss_pred --CCceEEEcCCCCcEE-EcCCcCCCc----cccCccCceeECC-CCeEEE-ecCCc-eEEEcHH
Confidence 456888998876543 332111111 1112223455555 665544 66777 4555544
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=7.2e-15 Score=162.53 Aligned_cols=251 Identities=12% Similarity=0.067 Sum_probs=183.7
Q ss_pred CCceEEEEeccCCCEEEEEe-C------------------------CeEEEEEcCCCeEEEEec-CCCCceEEEEEcCCC
Q 001168 840 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 893 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~ 893 (1134)
-..+.+++++|+|+++++.. + +.|.+||..+++.+..+. ++......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 56789999999999998887 4 379999999898877665 3456789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcCCce-EEEEe---------cCcccceEEEEEec-CCCEEEEEc-CCCcEEEEeCCCcccccc
Q 001168 894 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 894 ~~~lasg~~dg~i~iwd~~~~~-~~~~l---------~~h~~~i~~l~~s~-d~~~l~s~~-~D~~i~iWd~~~~~~~~~ 961 (1134)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+. .++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 8888888889999999976542 45555 34555789999999 888888886 6899999994 4443222
Q ss_pred eeeecCCC--CCCCCcCceEEEEcCC-CcEEEE-EECCeEEEEeCC-CccccccCCCCCCCCCeEEEEEcc------CCC
Q 001168 962 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1030 (1134)
Q Consensus 962 ~~~~~~~~--~~~~~~~v~~~~fspd-g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~v~~v~~s~------dg~ 1030 (1134)
........ .......+..++|+|+ |.++++ ..++.|++|+.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11111000 0001134789999999 555555 357899999995 777766543 34567899999999 333
Q ss_pred EEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001168 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1031 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
..++...+..|++|+..+|+.+..+... ..+...+.+++++| +|+++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~-------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV-------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS-------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC-------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333334558999999999998877421 12335678999999 779999999999999999864
No 175
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=1.4e-10 Score=144.74 Aligned_cols=535 Identities=9% Similarity=0.050 Sum_probs=322.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++...++|. |.+ |+. +.+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~-lWi-gT~-~Gl~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VWI-GTR-DGLSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EEE-EES-SCEEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EEE-EeC-CchheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 443 454 4589999876543211 000 0000012888988888876654
Q ss_pred EeCCCeEEEEEcCCCCcccceeEeecc-cCC-eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCCCCeEE
Q 001168 426 AFSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYS 502 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 502 (1134)
. . +.+..||..+++..... .++ ... |.++...+++. +..|+.++.|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 45889998764321100 011 123 88888888886 334565556899998777653321 123456888
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-------CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001168 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
+..... ..+..++.++-+.+||..+.+....... ....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 876543 3455566555688898776543322211 235799999999988766542 2 38999988
Q ss_pred CCeeEEEecC------ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCCcceEEEccCC
Q 001168 576 EGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEG 644 (1134)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~ 644 (1134)
++........ -....|.++...++|... .|+.++-|..|+..+.... .+... -....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7765433211 122368999999888654 5666677888987655432 22211 012358888888888
Q ss_pred CEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCc
Q 001168 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1134)
.+. .|+.++-|..|+..++ ... .+......
T Consensus 369 ~lW-iGt~~~Gl~~~~~~~~-~~~-~~~~~~~~----------------------------------------------- 398 (795)
T 4a2l_A 369 NLW-IGTNDGGLNLYNPITQ-RFT-SYTLQEDE----------------------------------------------- 398 (795)
T ss_dssp CEE-EEESSSCEEEECTTTC-CEE-EECCC--------------------------------------------------
T ss_pred CEE-EEECCCCeEEEcCCCC-cEE-EEecCCCC-----------------------------------------------
Confidence 744 5777778888887654 110 00000000
Q ss_pred cCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccc
Q 001168 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~ 804 (1134)
.. . ......|.++...++|+.|..++.++-+..|+....
T Consensus 399 ---------------------------------~~----~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 399 ---------------------------------SA----R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp --------------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred ---------------------------------cc----c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 00 0 002345788888888874555666566777775332
Q ss_pred cCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecC-----
Q 001168 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS----- 879 (1134)
Q Consensus 805 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~----- 879 (1134)
+. ..+..... ..+ ...|.++...++|.+.+... +.+.+||..+++.......
T Consensus 438 ~~------------~~~~~~~~---------~l~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 438 QV------------ENFNQRNS---------QLV-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp CE------------EEECTTTS---------CCS-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCB
T ss_pred cE------------EEeecCCC---------CcC-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccc
Confidence 11 00000000 012 56799999999998776655 5688999887765433221
Q ss_pred -CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-------CcccceEEEEEecCCCEEEEEcCCCcEEEE
Q 001168 880 -PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1134)
Q Consensus 880 -~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1134)
....|.++...+ ++++.+ |+. +-|..||..+++. .+. .....|.++...++|++.++.. . -|..|
T Consensus 495 ~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~ 567 (795)
T 4a2l_A 495 VVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCF 567 (795)
T ss_dssp CCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEE
T ss_pred cCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeE
Confidence 235789999988 777665 444 5688899887765 332 2345799999999998776554 3 48889
Q ss_pred eCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCCccccccCCCCCCC-CCe--EEEEEccC
Q 001168 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSCD 1028 (1134)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~v--~~v~~s~d 1028 (1134)
|..+++.. ......+-. ...|.++...++|++.+++ ++.|..|+.+......+...++.. ..+ .++...++
T Consensus 568 d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~ 641 (795)
T 4a2l_A 568 NEKDKQIK---RYNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSV 641 (795)
T ss_dssp ETTTTEEE---EECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTT
T ss_pred CCCCCcEE---EeCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCC
Confidence 98775422 122222221 1457888999999877766 577888998665555554433322 233 56777888
Q ss_pred CCEEEEEecCCcEEEEeCC
Q 001168 1029 GLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1029 g~~l~~~~~dg~I~vwd~~ 1047 (1134)
|++++ |+.+| +..++..
T Consensus 642 G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 642 GQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp SCEEE-EETTE-EEEECGG
T ss_pred CeEEE-ecCCc-eEEEcHH
Confidence 88555 55666 5555543
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.6e-14 Score=161.55 Aligned_cols=263 Identities=8% Similarity=0.108 Sum_probs=178.9
Q ss_pred CCeeEEEEecCCCeEEEEE--------eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC
Q 001168 347 SNVMSMDFHPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
..+..+++ ||++++++. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 46778888 888665543 226689999998875321 2 4588999999
Q ss_pred CCCEEEEEeCC---C--eEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcC------------------
Q 001168 419 DGLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------------------ 475 (1134)
Q Consensus 419 dg~~las~~~d---g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~------------------ 475 (1134)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988654 3 47788888765432 222333 99999999999 5555542
Q ss_pred ---------CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC-------eEEEEEccCCCceeEecC
Q 001168 476 ---------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYDA 539 (1134)
Q Consensus 476 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~ 539 (1134)
...|++||+.+++.+..+.. . .+..++|+| +| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999999887555554 4 788889976 44 677665542 44555555 333333333
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCCC----CCCcEEEEeCCCCeeEEEecCccCcceEE-EEEeCCCCEEEEEeCCCeEEE
Q 001168 540 PGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i 614 (1134)
+ ..+..+ +|||++++..+.+.. ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 444444 999999987764321 135788888 5655444444433 6775 8999 88 8888899999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE-EEEECC
Q 001168 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 662 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i-~iw~~~ 662 (1134)
| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 34688999999 677777776655 777765
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=9.1e-15 Score=179.57 Aligned_cols=250 Identities=10% Similarity=-0.014 Sum_probs=176.1
Q ss_pred ccccCCcCeEEEEECCCCCEEEEE--eCCCeEEEEEcCCCCcccceeEeecccCCee---------EEEEe--cCCCcEE
Q 001168 403 LLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQLC 469 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~d~~~~~ 469 (1134)
.+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+ .
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~--~ 92 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG--P 92 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--C
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--e
Confidence 466799999999999887777777 558899999975444333 4556666666 67676 9999 4
Q ss_pred -EEEEc-CCCcEEEEECC--CCeeeEEecC-----CCCCeEEEEeeccCCccEEEEEecC----------CeEEEEEccC
Q 001168 470 -IVTCG-DDKMIKVWDVV--AGRKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYDY 530 (1134)
Q Consensus 470 -l~sg~-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d----------~~i~~wd~~~ 530 (1134)
|+.++ .+..|.+|++. .+.....+.. |...+.+++|+|++ +.|++++.+ ..|++||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 55443 36677777765 2033456655 66778899998855 889888877 5899999987
Q ss_pred C-----CceeEec-CCCCcEEEEEECCCCCEEEEEeeCCC----CCCcEEEEeCC-CC---eeEEEecCccCcceEEEEE
Q 001168 531 L-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EG---AIKRTYSGFRKRSLGVVQF 596 (1134)
Q Consensus 531 ~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~ 596 (1134)
. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+.|
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAEW 249 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEEE
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceEE
Confidence 2 3344444 55567888999999999998775331 13579999999 57 33333333333 7889999
Q ss_pred eCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCC------CCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 597 DTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 597 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+|||+.+++++.++ .|++||+.+++.......+... ..+..++|+++++++++++. +.++||.+
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99999777777777 6777777677654433322111 01457888888888888888 88888843
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=3.9e-13 Score=157.59 Aligned_cols=274 Identities=14% Similarity=0.093 Sum_probs=196.2
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcC-
Q 001168 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN- 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~- 438 (1134)
.++++...++.|.++|..+++.+.+ +. ....+..++|||||+++++++.++.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4777788899999999999887653 11 23356789999999999999999999999995
Q ss_pred -CCCcccceeEeecccCCeeEEEEe----cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC-----------CCCeEE
Q 001168 439 -PTGELRQHLEIDAHVGGVNDIAFA----HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-----------EAPVYS 502 (1134)
Q Consensus 439 -~~~~~~~~~~~~~h~~~v~~l~~s----~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-----------~~~v~~ 502 (1134)
+++.+. .+... .....++|+ |||+. ++++...+++|.++|..+.+.+..+... ...+..
T Consensus 228 ~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 655443 44332 346789999 69995 4445556799999999999988876521 125677
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001168 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
+..++... .++++...+|.|.++|.......... .........+.|+|+|++++++.. .++.|.++|..+++.+.
T Consensus 303 i~~s~~~~-~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 303 ILASHYRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEECSSSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEE
T ss_pred EEEcCCCC-EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEE
Confidence 77766542 56677777899999998765433221 123345678899999999987764 36679999999999887
Q ss_pred EecC-ccCc-ceEEE-EEeCCCCEEE-EEe-CCCeEEEEECCC-------CeeEEEEeCCCCCCCcceEEEccCCCEEEE
Q 001168 582 TYSG-FRKR-SLGVV-QFDTTRNRFL-AAG-DEFQIKFWDMDN-------MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 582 ~~~~-~~~~-~v~~~-~~~~~~~~l~-~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 649 (1134)
.+.. .... +-... .++|++..+. ++. .++.|.++|..+ .+.+.++...+. .-..+..+|+++++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEE
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEE
Confidence 7765 2210 11112 2688755554 443 568999999987 667888876532 2245789999999988
Q ss_pred EeC-------CCcEEEEECCCc
Q 001168 650 TTS-------DNGIKILANSDG 664 (1134)
Q Consensus 650 ~~~-------dg~i~iw~~~~~ 664 (1134)
... .++|.++|+.+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCcccCceEEEEECCcc
Confidence 663 358999998654
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=3.4e-14 Score=157.03 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=182.3
Q ss_pred CCeeEEEEecCCCeEEEEEeCC------------------------CcEEEEEccCccccccccceeecccccccccccc
Q 001168 347 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
+.|.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4799999999997 66777666 4789999887775432
Q ss_pred ccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC-cccceeEe---------ecccCCeeEEEEec-CCCcEEEE
Q 001168 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 471 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~l~~s~-d~~~~~l~ 471 (1134)
.-.++-.....++++|+|+++++...++.|++||.++.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012344578899999999988888889999999986542 222 23 23445689999999 676 677
Q ss_pred EEc-CCCcEEEEECCCCeeeEEecC----------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--
Q 001168 472 TCG-DDKMIKVWDVVAGRKQYTFEG----------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1134)
Q Consensus 472 sg~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-- 538 (1134)
+.+ .++.|++|| .+|+.+..+.. +-.....++++++. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 775 689999999 67887777642 22348899998752 3788888889999999998777766663
Q ss_pred CCCCcEEEEEECCCCCEEEEEee---CCCCCCcEEEEeCCCCeeEEEec---CccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001168 539 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
.....+.+++|+| +..+.+.+. .......|++||..+++.+..+. .+.. ....++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 444433321 01235579999999999998874 3333 68899999999777778889999
Q ss_pred EEEECCC
Q 001168 613 KFWDMDN 619 (1134)
Q Consensus 613 ~iwd~~~ 619 (1134)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=1.2e-14 Score=178.56 Aligned_cols=284 Identities=10% Similarity=-0.007 Sum_probs=187.4
Q ss_pred CCCCeeEEEEecCCCeEEEEE--eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE---------E
Q 001168 345 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 413 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~---------~ 413 (1134)
|...|..++|++++- +++++ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 566899999998864 45555 5578899999644432221 333444444 5
Q ss_pred EEEC--CCCCE-EEEEeC-CCeEEEEEcC--C-CCcccceeEeec-----ccCCeeEEEEecCCCcEEEEEEcCC-----
Q 001168 414 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 476 (1134)
Q Consensus 414 i~~s--pdg~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~sg~~d----- 476 (1134)
..|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5565 99998 877654 5667777765 3 33 22 3334 667889999999999 67777766
Q ss_pred -----CcEEEEECCC------CeeeEEec-CCCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEcc-CC---C
Q 001168 477 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 532 (1134)
Q Consensus 477 -----~~i~iwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d--------~~i~~wd~~-~~---~ 532 (1134)
..|++||+.+ ++ ...+. .+...+..++|+|+ |++|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpD--G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPD--GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTT--SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCC--CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 54 45565 66677888888775 4888887755 479999998 45 2
Q ss_pred ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc-------ceEEEEEeCCCCEEEE
Q 001168 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 605 (1134)
.......+...+..++|+|||++++++.. ++...|++||..+++.......+... .+..++|+|++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444678999999999995555432 23347888888777765444433221 1457889999999999
Q ss_pred EeCCCeEEEE--ECCCCeeEEEEeCCCCCCCcceEEEccCCCE--EEEEeCCC--cEEEEECCCc
Q 001168 606 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRLRFNKEGSL--LAVTTSDN--GIKILANSDG 664 (1134)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~~~~dg--~i~iw~~~~~ 664 (1134)
++. +.+++| |+.+++ +..+..+ ...+..+ +++++.. +++++.+. .|.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGP--WTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCC--CCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 665555 4555544 2345555 1444443 34445554 4555566555
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=2.2e-13 Score=147.50 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=178.6
Q ss_pred cCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEe---ecccCCeeEEEEe-cCCCcEEEEEEc-CCCcEE
Q 001168 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCG-DDKMIK 480 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s-~d~~~~~l~sg~-~d~~i~ 480 (1134)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+..+++. +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4433311100 1244578999995 6665 555553 388999
Q ss_pred EEECCCCeeeEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCCCEEE
Q 001168 481 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 557 (1134)
+|| .+++.+..+.. +...+.+++++++ |.++++...++.|.+||.. ++....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67777776643 4467889999774 4777877788999999965 34444443 3345689999999998766
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeeEEEEeCCCCCCCc
Q 001168 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+
T Consensus 180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 6542 667999997 456666665432 12678899999998888887775 9999996 56667777655433346
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987776 67999999997543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.8e-13 Score=168.68 Aligned_cols=249 Identities=8% Similarity=0.010 Sum_probs=177.0
Q ss_pred ccCCcCeEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCc-
Q 001168 405 NDAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~- 478 (1134)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 34556789999999999999876543 899999999875542 221 22367899999999 6777766655
Q ss_pred ---------------EEEEECCCCee----eEEecCCCCCeEEEEeeccCCccEEEEEec-----CCeEEEEEccC----
Q 001168 479 ---------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY---- 530 (1134)
Q Consensus 479 ---------------i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-----d~~i~~wd~~~---- 530 (1134)
|++|++.+++. +.....|...+..+.|+|++ ++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988763 22333355667888887754 77777664 56899999986
Q ss_pred --CC-ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCccC-cceEEEEEeCCCCEEE
Q 001168 531 --LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 531 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 604 (1134)
+. ....+..+...+.. .|+|+|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 34455555544444 48899999887764333356799999987642 234444433 3677889987777777
Q ss_pred EEeCCCe--EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC----CCcEEEEECCCc
Q 001168 605 AAGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1134)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----dg~i~iw~~~~~ 664 (1134)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .++|..||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 7888874 666787778777777765 346788899999877664432 478999999877
No 183
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.9e-09 Score=132.55 Aligned_cols=591 Identities=11% Similarity=0.083 Sum_probs=338.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++.-.++|... .|+.+| +..||-.+ |+.+... ... .. ...-....|.++.-.++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~--------f~~~~~~-~~~-~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLW--FATEEG-LNKFDGTR--------FITYYKE-EQS-SS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCEE--EEESSC-EEEECSSS--------EEEECCC-SSC-SS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCEE--EccCCc-CccccCCc--------eEEEEcC-CCC-Cc--cccccccccceEEEcCCCCEEEE
Confidence 3589999999999633 356555 66666332 1111110 000 00 00012346999999988884556
Q ss_pred EeCCCeEEEEEcCCCCcccceeEee-----c---ccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeeeEEec-
Q 001168 426 AFSKHIVHLYTYNPTGELRQHLEID-----A---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE- 494 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~- 494 (1134)
|+.++-+..||..+++.. .+. . ....|.++.... ++. |..++.++.|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~ 155 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKS 155 (781)
T ss_dssp EESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTT
T ss_pred EeCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccC
Confidence 777745999998875321 111 0 123588888777 664 4445545568899987776433211
Q ss_pred ----CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-------cCCCCcEEEEEECCCCCEEEEEeeCC
Q 001168 495 ----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 495 ----~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
-....|.++..... ..|..++.++-+..||..+.+..... ......|.++...++|...+...
T Consensus 156 ~~~~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~--- 229 (781)
T 3v9f_A 156 TVPALPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS--- 229 (781)
T ss_dssp TCTTCSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred cccCCCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence 11345777766443 35556777766888987765432211 11235789999999888776542
Q ss_pred CCCCcEEEEeCCCCeeEEEecC------ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-------CC-
Q 001168 564 EGESHLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD- 629 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~- 629 (1134)
. -+.+||..+++...-... .....|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~ 305 (781)
T 3v9f_A 230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD 305 (781)
T ss_dssp --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence 2 489999877654432211 1223688888888775 4455554568889987765432211 10
Q ss_pred ----CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccc
Q 001168 630 ----GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1134)
Q Consensus 630 ----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
-....|.++...++|. |-.|+.++-|..++..++ . +..+......
T Consensus 306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~---------------------------- 354 (781)
T 3v9f_A 306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPP-T-FHTWSYSPTQ---------------------------- 354 (781)
T ss_dssp STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC-S-CEEEC----C----------------------------
T ss_pred CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC-c-ceeeccCccc----------------------------
Confidence 1123578888888886 455776777888876544 1 1101000000
Q ss_pred cCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCc
Q 001168 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1134)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 785 (1134)
. .+.......|.++...++|.
T Consensus 355 -----------------------------------------------~------------~~~~l~~~~v~~i~~d~~g~ 375 (781)
T 3v9f_A 355 -----------------------------------------------M------------NESSLSNKVVSSVCDDGQGK 375 (781)
T ss_dssp -----------------------------------------------C------------CSSCCSSSCEEEEEECTTSC
T ss_pred -----------------------------------------------c------------ccCCCCCcceEEEEEcCCCC
Confidence 0 00000234578888888887
Q ss_pred ceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEE
Q 001168 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 865 (1134)
Q Consensus 786 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~v 865 (1134)
|..++.++-+..|+....... .+. . ..... ...|.+++..++|.+.+...++.+..
T Consensus 376 -lWigt~~~Gl~~~~~~~~~~~------------~~~-~---------~~~~~-~~~v~~i~~d~~g~lWigt~~~Gl~~ 431 (781)
T 3v9f_A 376 -LWIGTDGGGINVFENGKRVAI------------YNK-E---------NRELL-SNSVLCSLKDSEGNLWFGTYLGNISY 431 (781)
T ss_dssp -EEEEEBSSCEEEEETTEEEEE------------CC---------------CC-CSBEEEEEECTTSCEEEEETTEEEEE
T ss_pred -EEEEeCCCcEEEEECCCCeEE------------Ecc-C---------CCCCC-CcceEEEEECCCCCEEEEeccCCEEE
Confidence 445555555777764321110 000 0 00012 56799999998888777444678999
Q ss_pred EEcCCCeEEEEec--CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCc-----ccceEEEEEecCCCE
Q 001168 866 FNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNA 938 (1134)
Q Consensus 866 wd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h-----~~~i~~l~~s~d~~~ 938 (1134)
+|..+++...... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 508 (781)
T 3v9f_A 432 YNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF 508 (781)
T ss_dssp ECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE
T ss_pred EcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE
Confidence 9988776543321 1346799999988 666554 555 56889998876543332222 357999999999987
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCCccccccCCCCCC-C
Q 001168 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-P 1017 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~ 1017 (1134)
.+....+| |..||..+++... .....+. +...|.++...++|++.+.+.+|-|..||........+....+. .
T Consensus 509 Wigt~~~G-l~~~~~~~~~~~~---~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~ 582 (781)
T 3v9f_A 509 WIGTFGGG-VGIYTPDMQLVRK---FNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPN 582 (781)
T ss_dssp EEEESSSC-EEEECTTCCEEEE---ECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSC
T ss_pred EEEEcCCC-EEEEeCCCCeEEE---ccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCC
Confidence 76554345 7889887654221 1111111 12468899999999987776644448898855444444322221 3
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE
Q 001168 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1097 (1134)
Q Consensus 1018 ~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1097 (1134)
..|.++...++|.+.+ ++.+| |..|+..+++.. .+....-++ ......-++...+ +|++++ |+.+| +..+
T Consensus 583 ~~i~~i~~d~~g~lW~-~t~~G-l~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~l~~-g~~~G-l~~f 652 (781)
T 3v9f_A 583 THIRAISEDKNGNIWA-STNTG-ISCYITSKKCFY-TYDHSNNIP----QGSFISGCVTKDH-NGLIYF-GSING-LCFF 652 (781)
T ss_dssp CCCCEEEECSSSCEEE-ECSSC-EEEEETTTTEEE-EECGGGTCC----SSCEEEEEEEECT-TSCEEE-EETTE-EEEE
T ss_pred ceEEEEEECCCCCEEE-EcCCc-eEEEECCCCceE-EecccCCcc----ccccccCceEECC-CCEEEE-ECCCc-eEEE
Confidence 4688999988888555 44454 888888765432 222111111 1112223455555 665554 67778 5556
Q ss_pred ecCC
Q 001168 1098 EPSD 1101 (1134)
Q Consensus 1098 ~~~~ 1101 (1134)
+...
T Consensus 653 ~p~~ 656 (781)
T 3v9f_A 653 NPDI 656 (781)
T ss_dssp CSCC
T ss_pred Chhh
Confidence 6543
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.7e-13 Score=152.27 Aligned_cols=271 Identities=11% Similarity=0.073 Sum_probs=187.8
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
..|.+++|+|++.. ++..+.++.++.|. ++.... +..+...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 46788999999874 45556788889983 222211 34466678999999999988888
Q ss_pred eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeeeEEec--CCCCCe
Q 001168 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 500 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~--~h~~~v 500 (1134)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998875432 2224667899999999998 67766666 689999988877553433 244578
Q ss_pred EEEEeeccCCccEEEEEec------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001168 501 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
.+++++++ |.++++... .+.|..||..+.+... +......+..++|+|+++.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCC--CCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 89999775 466666553 2456666554433322 2222335788999999997765542 2567999998
Q ss_pred CC-CeeEEE--------ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----CCCcceEEEc
Q 001168 575 SE-GAIKRT--------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFN 641 (1134)
Q Consensus 575 ~~-~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s 641 (1134)
.+ +..... +.++ ..+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred cCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC
Confidence 63 332221 1221 25778999999998888878899999998 5666666654421 1247899999
Q ss_pred cCCCEEEEEeCCC
Q 001168 642 KEGSLLAVTTSDN 654 (1134)
Q Consensus 642 ~d~~~l~~~~~dg 654 (1134)
+|+..|++++.++
T Consensus 289 ~dg~~L~v~~~~g 301 (333)
T 2dg1_A 289 PGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEEECG
T ss_pred CCCCEEEEEeCcc
Confidence 9987777666653
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=2.4e-13 Score=150.92 Aligned_cols=273 Identities=13% Similarity=0.076 Sum_probs=185.2
Q ss_pred cceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001168 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..|.+++|++++..++....++.++.|.-. .... +.. + ...+.+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g 56 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQG 56 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTS
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCC
Confidence 456778899998888877778877777311 0000 111 2 4567899999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC----CcEEEEEcCCceEEEEec--Cccc
Q 001168 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQN 925 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d----g~i~iwd~~~~~~~~~l~--~h~~ 925 (1134)
++++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9877776 78999999998877665545667899999999 88888777666 689999998876543333 3445
Q ss_pred ceEEEEEecCCCEEEEEcC------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE--ECCeE
Q 001168 926 RITGLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQI 997 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v 997 (1134)
.+.+++++|+|+++++... .+.|..|+.++++... ..... ..+..++|+|||++|+++ .++.|
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeE
Confidence 7899999999998887654 2456666655544221 11110 236789999999977664 36899
Q ss_pred EEEeC--CCcccccc-----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCC
Q 001168 998 SVYDS--KLECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA 1070 (1134)
Q Consensus 998 ~vwd~--~~~~~~~~-----~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1134)
.+||. .+.....+ ....++ ..+..++++++|+++++...++.|.+||. +++.+..+.... ...++..
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~----~~~g~~~ 280 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG----RDEGHML 280 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT----GGGTCSC
T ss_pred EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC----Ccccccc
Confidence 99998 33332211 111111 46788999999998887777899999998 466665553221 0001112
Q ss_pred ccEEEeecCCCCCEEEEEeCC
Q 001168 1071 HPLVIAPHPSEPNQIALGMSD 1091 (1134)
Q Consensus 1071 ~~~~~~~~~~d~~~l~s~~~D 1091 (1134)
.+.+++|+| |++.|..++.+
T Consensus 281 ~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 281 RSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp BCCEEEECT-TSCEEEEEEEC
T ss_pred CcceEEECC-CCCEEEEEeCc
Confidence 566888988 66666555554
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=3.1e-13 Score=151.13 Aligned_cols=220 Identities=10% Similarity=0.090 Sum_probs=152.5
Q ss_pred ceEEEEeccCCCEEEEEe-C---Ce--EEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC------------
Q 001168 842 SAACIALSKNDSYVMSAS-G---GK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED------------ 903 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d------------ 903 (1134)
.+..++|||||++||..+ + +. |.+||+.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 367899999999999886 3 33 888899888776555433 3 99999999 88888877642
Q ss_pred ---------------CcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCC-------cEEEEeCCCcccccc
Q 001168 904 ---------------SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA-------QLCMWSIDKWEKLKS 961 (1134)
Q Consensus 904 ---------------g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-------~i~iWd~~~~~~~~~ 961 (1134)
..|++||+.+++.+..+.. . .+..++|+||| +++++..+. ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78899999999 877776542 4455555444321
Q ss_pred eeeecCCCCCCCCcCceEEEEcCCCcEEEEEE-C--------CeEEEEeCCCccccccCCCCCCCCCeEE-EEEccCCCE
Q 001168 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISS-AIYSCDGLL 1031 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d--------~~v~vwd~~~~~~~~~~~~~~h~~~v~~-v~~s~dg~~ 1031 (1134)
.+... + .+.. ++|||++|+... + ..|.+|| .++. ..+. ..|...+.. +.|+ |+ +
T Consensus 212 -~l~~~-~------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMFEK-V------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEV-MGIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEEEE-E------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCE-EESS--TTCCSEEEEEEEET-TE-E
T ss_pred -EeccC-c------ceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCce-Eecc--ccCCcccCCccEEc-Cc-E
Confidence 11111 1 1233 399999988743 2 3688888 4443 3222 234667886 9999 98 8
Q ss_pred EEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcE-EEEecC
Q 001168 1032 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAV-HVVEPS 1100 (1134)
Q Consensus 1032 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v-~vW~~~ 1100 (1134)
+++++.++.+++| +.+|+....+. +...+.+++++| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-----------~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-----------GRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-----------SSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-----------CCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 88665433221 123455788887 578888877765 777775
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=2e-13 Score=145.64 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=189.2
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCeEEEEecCCC-CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc-cce
Q 001168 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 927 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~i 927 (1134)
.+++|++++ ++.|.+||.++++.+..+..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999998776 4789999999 899888 45788999998 899999988653 478
Q ss_pred EEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeeecC-CCCCCCCcCceEEEEcCCCcEEEEE-ECCeEEEEeCCC
Q 001168 928 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1004 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~ 1004 (1134)
.++.+.+||+++++.+. ++.|..+|. +++.+....+... .++. .....+++.++|+++++. .++.|.+||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777777776 5554433322211 1111 234567889999999985 578999999998
Q ss_pred ccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCE
Q 001168 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQ 1084 (1134)
Q Consensus 1005 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1084 (1134)
+.+..+... ....++.+.++|.++++++.++.|..||..+|+.+.++..... + . .....+.+++..+ +|++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~-~--~~l~~~~~~~~~~-~G~i 226 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E-G--VQLFFVAQLFPLQ-NGGL 226 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B-S--CCCSEEEEEEECT-TSCE
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C-C--ccccccccceEcC-CCCE
Confidence 877666542 3456778899999999988888999999999999988753210 0 0 1124566777777 7888
Q ss_pred EEEEeCC--------CcEEEEec-CCCccccCCCCCCCCCCCCC
Q 001168 1085 IALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLPS 1119 (1134)
Q Consensus 1085 l~s~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1119 (1134)
+++.+.. +..++.++ .+++-.|+.....+-|.++.
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 8887421 23355665 57788898888877777765
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=3.8e-13 Score=165.87 Aligned_cols=246 Identities=8% Similarity=-0.011 Sum_probs=171.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. ......+..++|||||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--------------------~~~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--------------------VLERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--------------------EEEEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--------------------cccCcccceEEEEeCCCE
Confidence 36889999999996555544444 899999999876531 012223678999999999
Q ss_pred EEEEeCCCe----------------EEEEEcCCCCcccceeEee--cccCCeeEEEEecCCCcEEEEEEcC-----CCcE
Q 001168 423 LGVAFSKHI----------------VHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGD-----DKMI 479 (1134)
Q Consensus 423 las~~~dg~----------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i 479 (1134)
|+.++.++. |++|++.+++... ...+. .|...+..+.|+|||+ +|+.++. +..|
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l 261 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRL 261 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccc-eEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEE
Confidence 999988765 9999998865321 11222 2455688999999999 4554432 6789
Q ss_pred EEEECCC------Ce-eeEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEccCCCc--eeEecCCC--CcE
Q 001168 480 KVWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLGS--RVDYDAPG--NWC 544 (1134)
Q Consensus 480 ~iwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~--~~~~~~~~--~~v 544 (1134)
++||+.+ +. ....+..+...+... |++++ ..|+..+. .+.|.+||+.+... ...+..+. ..+
T Consensus 262 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 262 WYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEECcccccccCCccceEEeeCCCCcEEEE-EeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 9999986 53 456666676666553 65544 55555544 23699999987652 23333333 368
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE-e---CCCeEEEEECCCC
Q 001168 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNM 620 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~ 620 (1134)
..++|++++.++++... ++...|++|++.+|+.+..+..+.. .+..++++|+++.++.. + ..+.|+.||+.++
T Consensus 339 ~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 88999877666666654 2344688889878887788877644 78889999999776643 2 4579999999887
Q ss_pred e
Q 001168 621 N 621 (1134)
Q Consensus 621 ~ 621 (1134)
+
T Consensus 416 ~ 416 (710)
T 2xdw_A 416 E 416 (710)
T ss_dssp S
T ss_pred c
Confidence 7
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2e-13 Score=167.72 Aligned_cols=246 Identities=11% Similarity=-0.030 Sum_probs=168.0
Q ss_pred ccCCcCeEEEEECCCCCEEEEE-----eCCCeEEEEEcCCCCcccceeEeecccCCe--eEEEEecCCCcEEEEEEcCCC
Q 001168 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGV--NDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v--~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
.+|...+..++|||||++||.+ +.+..|++||+.+++.+.. .+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecC
Confidence 3566789999999999999944 4457899999999875411 122222 6899999999 778777776
Q ss_pred c-------------EEEEECCCCe----eeEEecCCCCCeEEEEeeccCCccEEEEEecCC----eEEEEEccCCCceeE
Q 001168 478 M-------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVD 536 (1134)
Q Consensus 478 ~-------------i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~ 536 (1134)
. |++|++.++. .+.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 5 9999999876 333444466778889997755 7777777665 66677654443 333
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee---EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEE
Q 001168 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1134)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1134)
+..+...+....+ ++|+ ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..+
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 3334444555556 6777 555443222468899999987753 333333324367888888 666777888899888
Q ss_pred EEECC-CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC----CCcEEEEECCCc
Q 001168 614 FWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1134)
Q Consensus 614 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----dg~i~iw~~~~~ 664 (1134)
+|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.++
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 88655 355555554432 235777889999987774433 478999999877
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=4.9e-13 Score=147.39 Aligned_cols=241 Identities=11% Similarity=0.056 Sum_probs=171.7
Q ss_pred CceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001168 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ ++++.++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 345677774 344444444 7999999999999988886 346789999998 776555554899999999999998877
Q ss_pred ecCcc-----cceEEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEE
Q 001168 920 LKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1134)
Q Consensus 920 l~~h~-----~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1134)
+.... .....+++ .+++++++.. .++.|.+||..+++..... .. + ..+..++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--TI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE--EC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE--Ec--C-----CCccceEEcCCCCEEEEEC
Confidence 66433 14567777 4555555543 4889999999998754322 11 1 2356889999999877743
Q ss_pred -C----------CeEEEEeC-CCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccc
Q 001168 994 -E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061 (1134)
Q Consensus 994 -d----------~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~ 1061 (1134)
+ +.|.++|. +++....+.... ......++|+||+++|+++.. .|.+||..+++...... .
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~ 262 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----L 262 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----B
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----e
Confidence 3 68999999 444444443322 246899999999999988755 89999999887642111 1
Q ss_pred cccccCCCCccEEEeecCCCCCEEEEE----eCCCcEEEEecCCCccccC
Q 001168 1062 PTYAVSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKWG 1107 (1134)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~d~~~l~s~----~~Dg~v~vW~~~~~~~~~~ 1107 (1134)
+. ....+.+++++|.+++++++. ..+++|.+|+.. ++..+.
T Consensus 263 ~~----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 263 EF----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp CC----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred cC----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 10 125677899999778888887 678999999987 764443
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.7e-11 Score=133.56 Aligned_cols=281 Identities=9% Similarity=-0.036 Sum_probs=194.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|.+.+
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 346899999999998 66655557899999987 443210 0122446799999999999888
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-EecCCCCCeEEE
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1134)
+...++.|..||.. ++ ... ..+......+.++++.++|. ++++...++.|.+||. +++... ....+...+.++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999986 32 221 12223455789999999998 6777777889999998 665433 233345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeE-ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++.++ |.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++....
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEF 218 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEE
Confidence 88654 467777767889999998 4443322 333445788999999998766543 2567999998 6664432
Q ss_pred -ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 583 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 583 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..... ..+.+++++++|+.+++...++.|..||. +++ +..+....+...+.++++ ++|.+.++.. .+.+..++.
T Consensus 219 ~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 219 KIPTPN-ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred ECCCCC-CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence 22222 36889999999987666657889999998 454 334433333346789999 8888766654 567777777
Q ss_pred CCc
Q 001168 662 SDG 664 (1134)
Q Consensus 662 ~~~ 664 (1134)
.++
T Consensus 294 ~~~ 296 (299)
T 2z2n_A 294 IKD 296 (299)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=1.1e-12 Score=144.48 Aligned_cols=277 Identities=12% Similarity=-0.008 Sum_probs=189.1
Q ss_pred CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccce
Q 001168 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446 (1134)
Q Consensus 367 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~ 446 (1134)
.+++|.+||..+++...... .. .. -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~----~~------~n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVF----YR------AN---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHH----HH------HH---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhH----hh------hc---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 38899999999987654210 00 00 01122446677774 45555666678999999999987665
Q ss_pred eEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC-----CCeEEEEeeccCCccEEEEEe-cC
Q 001168 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA-ID 520 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~~-~d 520 (1134)
.+. .......++++++++ +.++...++.|.+||+.+++....+.... .....+++ . ++..+++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 345688999999985 56666579999999999999887765433 14456666 2 224444443 48
Q ss_pred CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC------CCcEEEEeCCCCeeEEEecCccCcceEEE
Q 001168 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGVV 594 (1134)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1134)
+.|.+||+.+.+....+... .....++++|+|++++++..+.+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988776665543 345688999999877765421100 26799999999998877764333357889
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEE----eCCCcEEEEECCCchhhhh
Q 001168 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~----~~dg~i~iw~~~~~~~~~~ 669 (1134)
+|+|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +.+.
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988755 89999998887532111111123568899999 55555665 568899999987 6 4444
Q ss_pred hc
Q 001168 670 ML 671 (1134)
Q Consensus 670 ~~ 671 (1134)
.+
T Consensus 307 ~i 308 (328)
T 3dsm_A 307 EF 308 (328)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=9e-13 Score=143.40 Aligned_cols=241 Identities=7% Similarity=-0.008 Sum_probs=172.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence 45678899999999878888999999999999876 221 233567799999999999888
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeec-ccCCeeEEEEecCCCcEEEEE----Ec-------------CCCcEEEEECCC
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVT----CG-------------DDKMIKVWDVVA 486 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s----g~-------------~d~~i~iwd~~~ 486 (1134)
+...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 887788999999987764321111111 123567899999998 6776 33 13456666654
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc-CCCc---eeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001168 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
++ +..+..+......++|+|++ ..+++.+.++.|.+||+. .+.. ...+......+.+++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 34455566778899997755 677777888999999997 3332 22333344566789999999877665
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE-eCCCCEEEEEeCCCeEEEEECCCCee
Q 001168 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 3459999986 777777776654 788889 5888988888875 455666665543
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.3e-12 Score=142.14 Aligned_cols=238 Identities=13% Similarity=0.059 Sum_probs=170.0
Q ss_pred cccCCcCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001168 404 LNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 334556788999999998 7788888999999999876 33 4556777899999999998 77777778899999
Q ss_pred ECCCCeeeEEecCC----CCCeEEEEeeccCCccEEEEEec-----------------CCeEEEEEccCCCceeEecCCC
Q 001168 483 DVVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPG 541 (1134)
Q Consensus 483 d~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~l~s~~~-----------------d~~i~~wd~~~~~~~~~~~~~~ 541 (1134)
|..+++........ ...+..+++++ +|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765433221 23456788866 4477776321 2345555443 4444445556
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCee---EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001168 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
.....++|+|+++.+++.. .++.|.+|++. +++. ...+ ......+..++++++|+.+++. ++.|.+||.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6778999999999994443 36789999987 5554 3444 2223356779999999876666 789999998
Q ss_pred CCCeeEEEEeCCCCCCCcceEEE-ccCCCEEEEEeCCCcEEEEECCCc
Q 001168 618 DNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 6 777777775533 788999 58999999888764 444455443
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=1.4e-12 Score=139.70 Aligned_cols=238 Identities=10% Similarity=0.042 Sum_probs=167.2
Q ss_pred ceEEEEeccCCCEEE-EEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001168 842 SAACIALSKNDSYVM-SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+.... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-V 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence 678999999999777 434 78999999866543322223345688999999 788666555 889999998765433 3
Q ss_pred ec-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE-ECCeE
Q 001168 920 LK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQI 997 (1134)
Q Consensus 920 l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v 997 (1134)
+. .....+.+++++++|+++++...++.|.+|+..+.... ...... ...+..++++++|+++++. .++.|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-----~~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-----VLPFTG---LNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-----ECCCCS---CCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-----eecccc---CCCceeEEEeCCCCEEEEECCCCEE
Confidence 32 23356899999999998888888889999976554321 111111 1346889999999977664 46899
Q ss_pred EEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEee
Q 001168 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAP 1077 (1134)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1134)
.+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... ... .+...+.++++
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~---------~~~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF---------TGLNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC---------CSCSCEEEEEE
T ss_pred EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc---------CCCCCceeEEE
Confidence 999995554433222 123678999999999877777778899999987654332 110 11245778999
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1078 HPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1078 ~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
++ +|+++++...+++|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 98 67899999999999999987655
No 196
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=6e-09 Score=129.69 Aligned_cols=536 Identities=11% Similarity=0.074 Sum_probs=314.2
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC--CCCEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~la 424 (1134)
..|.++...++|..|. .|+.++.+..||..+++.... .... ... ..-....|.++.... +|.. .
T Consensus 66 n~I~~i~~d~~g~~lW-igt~~~Gl~~~d~~~~~f~~~------~~~~----~~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW-IATQRAGLNAYNYETQSFSVY------QYNP----EDP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSEEE-EEESSSCEEEEETTTTEEEEE------CCCT----TCS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCEEE-EEeCCCCcceECCCCCeEEee------cccc----CCC--CCcccCcceEEEecCccCCCE-E
Confidence 4699999999886233 466665799999887653211 0000 000 001224688888887 6654 4
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeec------ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC---
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--- 495 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--- 495 (1134)
.++.++.+..||..+++.. .+.. ....|.++...++|. |..|+.++-|..+|..+++.......
T Consensus 132 i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~ 204 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQN 204 (781)
T ss_dssp EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC----
T ss_pred EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCC
Confidence 4554445888998764321 1211 124588888887776 44466665689999887764322110
Q ss_pred ----CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-------cCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001168 496 ----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 496 ----h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
....|.++.... +|. |..++.+ -+.+||..+....... ......|.++...++|...+...
T Consensus 205 ~~~l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~---- 276 (781)
T 3v9f_A 205 PNSLPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE---- 276 (781)
T ss_dssp ----CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES----
T ss_pred cccCCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC----
Confidence 134688877644 334 4445555 6888987654432211 12345799999988887665432
Q ss_pred CCCcEEEEeCCCCeeEEEec-------------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe----
Q 001168 565 GESHLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---- 627 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 627 (1134)
.+-|.++|..++....... .-....|.++...++|.. -.|+.++-|..++..+........
T Consensus 277 -~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~ 354 (781)
T 3v9f_A 277 -LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQ 354 (781)
T ss_dssp -SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred -CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccc
Confidence 2338899987765332111 112236889988888864 456666678888887654332211
Q ss_pred ---CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCccccc
Q 001168 628 ---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1134)
Q Consensus 628 ---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1134)
..-....|.++...++|.+ ..|+.++-|..|+..++. .. .+...
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~-~~-~~~~~------------------------------ 401 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRV-AI-YNKEN------------------------------ 401 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEE-EE-CC---------------------------------
T ss_pred cccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCe-EE-EccCC------------------------------
Confidence 1112245888888888764 456766778888876541 10 00000
Q ss_pred ccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCC
Q 001168 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1134)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 784 (1134)
.......|.++...++|
T Consensus 402 ---------------------------------------------------------------~~~~~~~v~~i~~d~~g 418 (781)
T 3v9f_A 402 ---------------------------------------------------------------RELLSNSVLCSLKDSEG 418 (781)
T ss_dssp -----------------------------------------------------------------CCCSBEEEEEECTTS
T ss_pred ---------------------------------------------------------------CCCCCcceEEEEECCCC
Confidence 00023457788888788
Q ss_pred cceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEE
Q 001168 785 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVS 864 (1134)
Q Consensus 785 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~ 864 (1134)
...+ ++.++-+..++..+ ++........ .. ...|.+++..++|.+.+... +.|.
T Consensus 419 ~lWi-gt~~~Gl~~~~~~~----------------------~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl~ 472 (781)
T 3v9f_A 419 NLWF-GTYLGNISYYNTRL----------------------KKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGVF 472 (781)
T ss_dssp CEEE-EETTEEEEEECSSS----------------------CEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEEE
T ss_pred CEEE-EeccCCEEEEcCCC----------------------CcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-CceE
Confidence 7444 55545566665422 1111100000 02 56799999998887666544 6799
Q ss_pred EEEcCCCeEEEEecCC-----CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC----cccceEEEEEecC
Q 001168 865 LFNMMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG----HQNRITGLAFSPT 935 (1134)
Q Consensus 865 vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~----h~~~i~~l~~s~d 935 (1134)
.||..+++........ ...|.++...+ ++.+.+ |+.++-+..||..+++.. .+.. ....|.++...++
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~ 549 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSK 549 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTT
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCC
Confidence 9998876543332222 45799999988 777665 555445788988766543 3321 2356899999899
Q ss_pred CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCCccccccCCCCC
Q 001168 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDA 1015 (1134)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~ 1015 (1134)
|.+.++.. +|.|..||..+++.. ......+-. ...+.++...++|++.+++. +.|..++.+......+...++
T Consensus 550 g~lWi~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~~~~~dG 622 (781)
T 3v9f_A 550 GQMWLATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYTYDHSNN 622 (781)
T ss_dssp SCEEEEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEEECGGGT
T ss_pred CCEEEEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEcC-CceEEEECCCCceEEecccCC
Confidence 98777655 664488888776521 122222221 13578899999998777754 458888886555555544333
Q ss_pred CCC---CeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001168 1016 LPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1016 h~~---~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
... ...++...+||++++ |+.+| +..++..
T Consensus 623 l~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 623 IPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPD 655 (781)
T ss_dssp CCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSC
T ss_pred ccccccccCceEECCCCEEEE-ECCCc-eEEEChh
Confidence 222 235677788888555 66677 5666654
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=3.3e-11 Score=131.16 Aligned_cols=280 Identities=9% Similarity=0.062 Sum_probs=191.3
Q ss_pred cccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001168 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
+...+.++++.++|+.+++...++.|.+|+.. +......... + ...+.++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECC
Confidence 44678999999999977766667888888642 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecCcccce
Q 001168 851 NDSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRI 927 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~i 927 (1134)
+|.++++.. ++.|..||.. ++. ...+......+.++++++ +++++++...++.|.+||. +++.... +..+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888876 7889999986 333 222333456789999999 8888887777889999998 5554332 33345678
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE-ECCeEEEEeCCCcc
Q 001168 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~ 1006 (1134)
.++++.++|+++++...++.|..||. +++... ...... ...+..++++++|+++++. .++.|.+||.++.
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITTSGE- 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECCCCc-
Confidence 99999999998888877889999998 555321 111111 1357899999999977664 4688999999443
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001168 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
...+.. ..+...+.+++++++|++.++...++.|..||. +++. ..+... .....+.++++ + ++++++
T Consensus 215 ~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~--------~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 215 ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ--------IKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS--------SSSCCEEEEEE-C-SSCEEE
T ss_pred EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC--------CCCCccceEEe-c-CCCEEE
Confidence 333321 123567999999999997776667889999998 4542 222111 11245667777 6 777777
Q ss_pred EEeCCCcEEEEecCCC
Q 001168 1087 LGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1087 s~~~Dg~v~vW~~~~~ 1102 (1134)
+.+ .+.+..++..+.
T Consensus 282 ~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKD 296 (299)
T ss_dssp EET-TTEEEEEEEC--
T ss_pred Eec-CCcEEEEEcCcc
Confidence 655 567777777654
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=6.6e-13 Score=163.12 Aligned_cols=247 Identities=8% Similarity=-0.095 Sum_probs=163.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeC----CCcEEEEEccCcccc-ccccceeeccccccccccccccccCCcCeEEEEECCC
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTN----VGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
|...+.+++|||||++++++.+. +..|++||+.+++.+ .. . +... ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEecC
Confidence 33469999999999965554433 357999999998764 11 0 1111 1267999999
Q ss_pred CCEEEEEeCCCe-------------EEEEEcCCCCccc-ceeEeecccCCeeEEEEecCCCcEEEEEEcCCC----cEEE
Q 001168 420 GLMLGVAFSKHI-------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKV 481 (1134)
Q Consensus 420 g~~las~~~dg~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~----~i~i 481 (1134)
|+.|+.++.+.. |++|++.++..-. .......|...+..+.|+|||+ +|+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEE
Confidence 999999988776 9999998875321 1112234556789999999999 455554444 6777
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEccCCCc---eeEecCC-CCcEEEEEECCCCC
Q 001168 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGT 554 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~ 554 (1134)
||..+++ ...+..+...+....+ ++ |.+++... .++.|.+||+.+++. ...+..+ ...+..++|+ ++.
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~--g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WK--DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ET--TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cC--CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 7765554 4455556666666655 33 35444443 258899999987653 3333333 4568888888 555
Q ss_pred EEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCCEEEEEe----CCCeEEEEECCCCee
Q 001168 555 RLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 622 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1134)
.+++... ++..++|... +++....+..+....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 332 lv~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6666553 4444555433 35566666655444677888999998776432 457899999998774
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=2.7e-12 Score=136.77 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=178.6
Q ss_pred EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-cCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 001168 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 361 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~spdg~~las~~~dg~i~iwd~~~ 439 (1134)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 788999999999999999987654 22233 4688999999999988 45778999999 6
Q ss_pred CCcccceeEeecc-cCCeeEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeeeEEecC------CCCCeEEEEeeccCCc
Q 001168 440 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 511 (1134)
Q Consensus 440 ~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~ 511 (1134)
++.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......+++ ..+|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 77655 44443 34688999999999 7777766 778888884 7887776642 2123334444 4466
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC---
Q 001168 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 588 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 588 (1134)
.++++...++.|..||.+ ++.+..+... ..+.++.+.++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 8887777664 34556788899999988753 56799999999999998864321
Q ss_pred --cceEEEEEeCCCCEEEEEeCC--------CeEEEEEC-CCCeeEEEEeCCCCCCCcceEE
Q 001168 589 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 589 --~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
..+..+...++|+.+++.... +..+++.+ .+++.+-.+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136788889999888886421 23355555 4677777777665555666554
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=7.2e-12 Score=136.79 Aligned_cols=303 Identities=14% Similarity=0.141 Sum_probs=191.4
Q ss_pred EEECCCCCEEEEEeeC-CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe----------CCCeEEEE
Q 001168 547 MAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFW 615 (1134)
Q Consensus 547 ~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 615 (1134)
....|+++.+++.... ...++.|.++|..+++.+.++..... + . +.++|||++++++. .++.|.+|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456999998887541 11256899999999999999886655 4 4 99999999888765 36789999
Q ss_pred ECCCCeeEEEEeCCCC-----CCCcceEEEccCCCEEEEEeC--CCcEEEEECCCchhhhhhccCCccccCCCCCCCCCC
Q 001168 616 DMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1134)
Q Consensus 616 d~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1134)
|..+.+.+..+....+ ......++|+|||++++++.. ++.|.++|+.++ +.+..+..
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v--------------- 178 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDV--------------- 178 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEEC---------------
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEEC---------------
Confidence 9999999998864321 124578999999999988864 689999999887 33333211
Q ss_pred CCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCC
Q 001168 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1134)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~ 768 (1134)
++
T Consensus 179 ------------------------------------------------------------------------------~g 180 (386)
T 3sjl_D 179 ------------------------------------------------------------------------------PD 180 (386)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceE-EEE
Q 001168 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~-~~~ 847 (1134)
....+....+.+++.+.||.+.+.++... ++...... ...++. ...+. ..+
T Consensus 181 -------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~-----g~v~~~~~-~~~~~~---------------~~~~~~~~~ 232 (386)
T 3sjl_D 181 -------CYHIFPTAPDTFFMHCRDGSLAKVAFGTE-----GTPEITHT-EVFHPE---------------DEFLINHPA 232 (386)
T ss_dssp -------EEEEEEEETTEEEEEETTSCEEEEECCSS-----SCCEEEEC-CCCSCT---------------TSCBCSCCE
T ss_pred -------cceeecCCCceeEEECCCCCEEEEECCCC-----CeEEEeec-ceeccc---------------cccccccce
Confidence 00111112223334444444444443220 00000000 011111 11111 135
Q ss_pred e-ccCCCEEEEEeCCeEEEEEcCCCe--EEEEec---------C-CCCceEEEEEcCCCCcEEEEEeC----------CC
Q 001168 848 L-SKNDSYVMSASGGKVSLFNMMTFK--VMTMFM---------S-PPPAATFLAFHPQDNNIIAIGME----------DS 904 (1134)
Q Consensus 848 ~-s~dg~~la~~sdg~i~vwd~~~~~--~~~~~~---------~-~~~~i~~l~~s~~~~~~lasg~~----------dg 904 (1134)
| .++|+++.+..+|+|.+.|+.+.. ....+. + .......+++++ +++.+.+... .+
T Consensus 233 ~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 233 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEE
T ss_pred eEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCC
Confidence 5 478876665558999999997654 222221 0 112344588899 6666666542 25
Q ss_pred cEEEEEcCCceEEEEecCcccceEEEEEecCCC-EEEE-EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEE
Q 001168 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s-~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
+|.+.|+.+++.+..+..- ..+.+|++++|++ +|++ ...++.|.++|..+++.+..... .+ ....+.+
T Consensus 312 ~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~---~~------~p~~l~~ 381 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ---LG------HGPQVIT 381 (386)
T ss_dssp EEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC---CC------SSCCEEE
T ss_pred EEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC---CC------CCceeEE
Confidence 7999999999999887632 3678999999997 6655 45689999999999885543221 12 2356777
Q ss_pred cCC
Q 001168 983 HND 985 (1134)
Q Consensus 983 spd 985 (1134)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 776
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=3.6e-11 Score=134.03 Aligned_cols=275 Identities=9% Similarity=-0.020 Sum_probs=181.6
Q ss_pred EEecCCCeEEEEEe-CCC---cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe-
Q 001168 353 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 427 (1134)
Q Consensus 353 ~~spdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~- 427 (1134)
...|++++++++-. ..+ .|.+||..+++.+.+ +.....+ .+++||||++++++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577765444432 223 889999998876542 1112223 899999999999986
Q ss_pred ---------CCCeEEEEEcCCCCcccceeEe-ec---ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeeeEE
Q 001168 428 ---------SKHIVHLYTYNPTGELRQHLEI-DA---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 428 ---------~dg~i~iwd~~~~~~~~~~~~~-~~---h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~~~~ 492 (1134)
.++.|.+||..+.+.+.....- .. +...-..++|+|||+ +|+.+. .++.|.++| .+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 3678999999887655422110 00 012345899999999 555554 257899999 99998877
Q ss_pred -ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-----CCCCc-EEEEEECCCCCEEEEEeeCCCC
Q 001168 493 -FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 493 -~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
+.. .+ ++.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~-~~---~~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSS-PT---CYHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCC-Cc---eEEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 642 22 233444443 46677888999999999 665542221 11112 233456676665554432
Q ss_pred CCcEEEEeCCCCe--eEEEecCcc---------CcceEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCeeEE
Q 001168 566 ESHLVEWNESEGA--IKRTYSGFR---------KRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 566 ~~~i~~wd~~~~~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 624 (1134)
.+.+.+.|..++. .+..+.... ......+.++|+++.++++.. .+.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 4579999987542 223332110 112344789999998888653 3579999999999999
Q ss_pred EEeCCCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCc
Q 001168 625 TVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDG 664 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~ 664 (1134)
.+.... ....++|+|||+ +++++. .++.|.+||..++
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 987543 468999999999 777776 4899999999988
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=1.9e-12 Score=141.40 Aligned_cols=284 Identities=12% Similarity=0.117 Sum_probs=190.5
Q ss_pred EEEEecCCCeEEEEEeC----CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE
Q 001168 351 SMDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
.....|++++++++-.. ++.|.+.|..+++.+.+ +.....+ .+++||||+++.++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P--~va~spDG~~lyVa 95 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP--NPVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC--cEEECCCCCEEEEE
Confidence 45667899877666554 68999999999887653 1112223 39999999988877
Q ss_pred e----------CCCeEEEEEcCCCCcccceeEeec-----ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCee
Q 001168 427 F----------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRK 489 (1134)
Q Consensus 427 ~----------~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~ 489 (1134)
. .++.|.+||..+.+.+..+. +.. ....-..++|+|||+. ++.+. .++.|.++|+.+++.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence 5 36789999999987665332 111 0124567999999995 44443 478999999999999
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEe----cCCCCcE-EEEEE-CCCCCEEEEEeeC
Q 001168 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDY----DAPGNWC-TMMAY-SADGTRLFSCGTS 562 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~----~~~~~~v-~~~~~-s~~~~~l~~~~~~ 562 (1134)
+.++.... .. .+.|.+. ..+++.+.||.+.+.++.. ++..... ......+ ....| .++|++++...
T Consensus 173 v~tI~v~g--~~--~~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-- 245 (386)
T 3sjl_D 173 KRMLDVPD--CY--HIFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 245 (386)
T ss_dssp EEEEECCS--EE--EEEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred EEEEECCC--cc--eeecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence 98885321 11 1223332 5677888899999999876 3332211 1111122 12355 46776655432
Q ss_pred CCCCCcEEEEeCCCCe--eEEEec---------CccCcceEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCe
Q 001168 563 KEGESHLVEWNESEGA--IKRTYS---------GFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMN 621 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~ 621 (1134)
++.+++.|..++. .+..+. +........++++++++.++.... .+.|.+.|+.+++
T Consensus 246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 5779999987654 333332 111112344778999999888642 2579999999999
Q ss_pred eEEEEeCCCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCchhhhhhcc
Q 001168 622 MLTTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
.+..+.... .+..+++++|++ +|++.. .++.|.++|..++ +.++.+.
T Consensus 323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~ 371 (386)
T 3sjl_D 323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 371 (386)
T ss_dssp EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEec
Confidence 999987542 578999999997 666654 4899999999998 5555443
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=2.2e-12 Score=159.69 Aligned_cols=246 Identities=10% Similarity=0.043 Sum_probs=163.9
Q ss_pred cCCcCeEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCc--
Q 001168 406 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~-- 478 (1134)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999987654 4699999999876432 112223468899999 8 5666555443
Q ss_pred ------------EEEEECCCCee----eEEecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEccCC--Ccee
Q 001168 479 ------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 535 (1134)
Q Consensus 479 ------------i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~--~~~~ 535 (1134)
|++|++.++.. +.....+...+..+.|+|+ |++|+..+.++ .|++||+.++ +...
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD--GRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC--CCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 99999987752 2222334446888888765 47887777544 8999999876 3133
Q ss_pred EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEE
Q 001168 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1134)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1134)
.+..+...+.... +|+|+.|+..+........|.+||+.++ .....+..+ ...+..++++ ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444444444443 4899999887754334677999999875 333344443 3367777787 556677788888877
Q ss_pred EEECC-CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe----CCCcEEEEECCCc
Q 001168 614 FWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1134)
Q Consensus 614 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~dg~i~iw~~~~~ 664 (1134)
+|.+. ++.....+..+. ...+..++++|+++.++... ..++|++||+.++
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 77554 455555555432 23578889999988665332 2478999999877
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=4.8e-12 Score=135.59 Aligned_cols=240 Identities=8% Similarity=-0.061 Sum_probs=167.5
Q ss_pred CeeEEEEecCCCeEEE-EEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE
Q 001168 348 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999997 666 556788999999765442210 11233567899999999966666
Q ss_pred eCCCeEEEEEcCCCCcccceeEee-cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001168 427 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
. ++.|.+||..+.... .+. .....+..++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765322 121 2335689999999998 7777777889999986655443322233346778888
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001168 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
+++ |.++++...++.|.+||................+.+++++++|..+++.. .++.|.+|+............
T Consensus 158 ~~~--g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eCC--CCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 764 46777777789999999876554433233336789999999996666653 366799999876544332222
Q ss_pred ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001168 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+.. .+.+++++++|+.+++...++.|++++....+
T Consensus 232 ~~~-~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 GLN-TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SCS-CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCC-CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 222 67889999999988888899999999987654
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=1.5e-10 Score=125.94 Aligned_cols=278 Identities=10% Similarity=-0.019 Sum_probs=192.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
....+.++++.++|+ ++++...++.|.+||.. ++... + .+..+...+.++++.++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 346899999999998 66666668899999987 44321 0 0122346789999999999888
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-EecCCCCCeEEE
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1134)
+...++.|..||.. ++.. ...+......+.++++.++|. ++++...++.|..+|.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~--~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT--EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeE--EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 4432 112222346789999999998 67777778899999987 65542 233345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++.++ |.+.++...++.|..||. +++... ........+..++++++|+..++.. ..+.|.+||. +++....
T Consensus 152 ~~d~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSD--NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCC--CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 88664 466666666889999988 333332 2223445789999999997766653 2556999998 5554432
Q ss_pred -ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001168 583 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 583 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.... ..+.+++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPN-ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCC-CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222 26788999999987766666789999998 44433 333332334678999999998666544 4 6766664
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=2.5e-11 Score=135.26 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=162.6
Q ss_pred EEEeccCCCEEEEEe-----------CCeEEEEEcCCCeEEEEecCC-------CCceEEEEEcCCCCcEEEEEeC--CC
Q 001168 845 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 904 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~~lasg~~--dg 904 (1134)
.+++||||++++++. ++.|.+||..+++.+..+... ......++|+| ||++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998874 467999999998888776532 12345899999 8998888764 57
Q ss_pred cEEEEEcCCceEEEE-ecCcccceEEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceee-ecCCCCCCCCcCceEEE
Q 001168 905 SVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFI-QAPAGRQSPLVGETKVQ 981 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 981 (1134)
.|.++| .+++.+.. +... + ++.+.|++ +.+++.+.|+.+.++|. +++....... ....+.. .-.....
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99998877 6532 2 24455665 45667778999999999 7764421110 0001100 0112356
Q ss_pred EcCCCcEEE-EEECCeEEEEeCCCccc---cccCCCC-------CCCCCeEEEEEccCCCEEEEEec----------CCc
Q 001168 982 FHNDQTHLL-VVHESQISVYDSKLECS---RSWSPKD-------ALPAPISSAIYSCDGLLVYAGFC----------DGA 1040 (1134)
Q Consensus 982 fspdg~~l~-~~~d~~v~vwd~~~~~~---~~~~~~~-------~h~~~v~~v~~s~dg~~l~~~~~----------dg~ 1040 (1134)
|.+++..++ ++..+.+.+.|+..... ..+.... -.......+++++|++.|+++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 677665544 46678899999843221 1111100 01233455889999998887653 357
Q ss_pred EEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecCCCcc
Q 001168 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~~~~~ 1104 (1134)
|.++|..+++.+.++... ..+.+++|+| ||+ +++++. .+++|.+||+.+.+.
T Consensus 300 V~VID~~t~~vv~~i~~g-----------~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG-----------HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEEEECCCCEEEEEEECC-----------CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 999999999999888532 3466899999 677 777776 589999999998774
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=4.5e-10 Score=122.21 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=188.3
Q ss_pred cccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001168 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
....+.++++.++|+..++...++.|.+|+.. +......+.. + ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECC
Confidence 34577899999999977776677888888643 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCeEEE-EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE-EecCcccce
Q 001168 851 NDSYVMSAS-GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 927 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~-~l~~h~~~i 927 (1134)
+|.+.++.. ++.|..||.. ++... .+......+.++++.+ +++++++...++.|..||.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999887766 7889999988 55432 2333446789999999 88888777668899999987 65442 233345678
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE-ECCeEEEEeCCCcc
Q 001168 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~ 1006 (1134)
.++++.++++++++...++.|..++. +++... .... .. ...+..+++.++|+++++. ..+.|.+|+.++..
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 220 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcCCCcE
Confidence 99999999998887777888999998 444321 1111 11 1357899999999877775 45689999985443
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001168 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
...... .+...+.+++++++|++.++...++.|..|+. +++.. .+.. + .....+.+++.++ +|++++
T Consensus 221 ~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~----~----~~~~~~~~i~~~~-~g~l~v 287 (300)
T 2qc5_A 221 SEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL----Q----TENAEPHGITFGK-DGSVWF 287 (300)
T ss_dssp EEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC----C----STTCCCCCEEECT-TSCEEE
T ss_pred EEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC----C----ccCCccceeEeCC-CCCEEE
Confidence 332121 22567899999999997776666789999998 45433 2211 1 1123456777888 677666
Q ss_pred EEeCCCcEEEEec
Q 001168 1087 LGMSDGAVHVVEP 1099 (1134)
Q Consensus 1087 s~~~Dg~v~vW~~ 1099 (1134)
+.. . .|..++.
T Consensus 288 ~~~-~-~i~~~~p 298 (300)
T 2qc5_A 288 ALK-C-KIGKLNL 298 (300)
T ss_dssp ECS-S-EEEEEEE
T ss_pred Ecc-C-ceEEeCC
Confidence 554 4 6666665
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.4e-11 Score=152.39 Aligned_cols=244 Identities=8% Similarity=-0.037 Sum_probs=159.0
Q ss_pred CCeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..+..++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|||| +.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence 36889999999996555544434 599999999876431 012222467899999 99
Q ss_pred EEEEeCCCe--------------EEEEEcCCCCcccceeEee--cccCCeeEEEEecCCCcEEEEEEcC-----CCcEEE
Q 001168 423 LGVAFSKHI--------------VHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKV 481 (1134)
Q Consensus 423 las~~~dg~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i~i 481 (1134)
|+.++.++. |++|++.++.... ...+. .+...+..+.|+|||+ +|+..+. ...|++
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~ 298 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHV 298 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEE
Confidence 998876553 8999998765321 11222 2334588999999999 4554443 348999
Q ss_pred EECCCC--eeeEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEccCC--CceeEecCCCCcEEEEEECCCC
Q 001168 482 WDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 482 wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~----d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~ 553 (1134)
||+.++ ++...+..+...+.... .++ |..|+..+. ++.|.+||+.+. .....+..+...+..++++ ++
T Consensus 299 ~d~~~~~~~~~~~l~~~~~~~~~~~-~~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 299 ARVTNGKIGPVTALIPDLKAQWDFV-DGV--GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp EEEETTEECCCEEEECSSSSCEEEE-EEE--TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred EECCCCCCcccEEecCCCCceEEEE-ecc--CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence 999887 31455655655555543 344 366766665 345999998874 2333444444566677777 44
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE-e---CCCeEEEEECCCCe
Q 001168 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNMN 621 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~ 621 (1134)
..+++... ++...|.++++ +++....+.......+..+.++|+++.++.. + ..++|++||+.+++
T Consensus 375 ~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 375 RLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 45555543 22334555565 4566666665434478889999998766532 2 45789999999887
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=3.6e-11 Score=134.11 Aligned_cols=279 Identities=10% Similarity=0.096 Sum_probs=188.7
Q ss_pred cCCCeEEEEEeCC----CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe----
Q 001168 356 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 427 (1134)
Q Consensus 356 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~---- 427 (1134)
|++++++++...+ +.|.+.|..+++.+.+. .--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I-------------------~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT-------------------DGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-------------------EECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE-------------------ECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666666665544 79999999998877541 112234 799999999988876
Q ss_pred ------CCCeEEEEEcCCCCcccceeEee--c---ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeeeEEec
Q 001168 428 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~ 494 (1134)
.++.|.++|..+.+.+..+. +. . ....-..++|+|||+ +++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665332 21 0 112356789999999 455544 36899999999999988876
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE----ecCCCCc-EEEEEECCCCCEEEEEeeCCCCCCcE
Q 001168 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
--. . ....|.+. ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334333 5667778888888888844443321 1111111 123567899988877653 5679
Q ss_pred EEEeCCCCeeE--EEecCc---------cCcceEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCeeEEEEeC
Q 001168 570 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 628 (1134)
.+.|...+... ..+... .......++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111110 0001223689999988777542 35799999999999999875
Q ss_pred CCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCchhhhhhc
Q 001168 629 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 629 ~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 671 (1134)
.. ....++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 42 368999999999 888887 5899999999998 444443
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=2.7e-10 Score=125.03 Aligned_cols=244 Identities=12% Similarity=0.048 Sum_probs=165.2
Q ss_pred CCcCeEEEEECCCCCEEEE-------EeCCCeEEEEEcCCCCccccee-EeecccCCeeEEEEecC-CCcEEEEEEcCCC
Q 001168 407 AAISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDK 477 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las-------~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~ 477 (1134)
.-....+++|+++|.++++ +..++.|.+||..+++...... ...++...+.+++++++ |+ ++++.. .+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CC
Confidence 3345789999999988887 5778899999988765421100 00125567899999999 65 444444 44
Q ss_pred cEEEEECCCCeeeEE-ecC----CCCCeEEEEeeccCCccEEEEEecC---------------CeEEEEEccCCCceeEe
Q 001168 478 MIKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~~~l~s~~~d---------------~~i~~wd~~~~~~~~~~ 537 (1134)
.|.+||.. ++.... ... ....+.+++++++ |.++++...+ +.|..||.. ++ ...+
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV 167 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEe
Confidence 79999987 765432 221 1235788888764 4677666554 567777655 33 2222
Q ss_pred cCCCCcEEEEEEC----CCCCEEEEEeeCCCCCCcEEEEeCC-CCe-----eEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001168 538 DAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 538 ~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
.........++++ |+++.++.+.. .++.|.+||.. +++ ....+..+.......++++++|+.+++..
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 2233356789999 99987766542 35779999976 454 22233333202577899999999888887
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE-eCCCcEEEEECCC
Q 001168 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~ 663 (1134)
.++.|.+||..+++.+..+..+. ..+.+++|+++|+.|+++ ..++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999998787777776543 368899999999955544 4568899998764
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=7.9e-11 Score=131.33 Aligned_cols=240 Identities=14% Similarity=0.073 Sum_probs=162.1
Q ss_pred EEEeccCCCEEEEEe-----------CCeEEEEEcCCCeEEEEecCC-------CCceEEEEEcCCCCcEEEEEeC--CC
Q 001168 845 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 904 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~~lasg~~--dg 904 (1134)
.+++||||++++++. ++.|.++|..+++.+..+.-. ......++|+| |+++|.++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 799999999888774 467999999999998887522 12356789999 8888888764 57
Q ss_pred cEEEEEcCCceEEEEecCcccceEEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEc
Q 001168 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.|.+.|+.+++.+..+..-.. ....|++ +.+++.+.||.+.+.+..+++..... .....-... .....+.|+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~-~~~~~v~~~--p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN-TEVFHTEDE--LLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE-CCCCSCTTS--CBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe-eeeeccCCC--ceeeEeeec
Confidence 899999999999888764211 2333443 55566677888877777554432110 000100000 011245789
Q ss_pred CCCcEEEE-EECCeEEEEeCCCccccc---cCCC--C-----CCCCCeEEEEEccCCCEEEEEec----------CCcEE
Q 001168 984 NDQTHLLV-VHESQISVYDSKLECSRS---WSPK--D-----ALPAPISSAIYSCDGLLVYAGFC----------DGAIG 1042 (1134)
Q Consensus 984 pdg~~l~~-~~d~~v~vwd~~~~~~~~---~~~~--~-----~h~~~v~~v~~s~dg~~l~~~~~----------dg~I~ 1042 (1134)
++++.++. ...+.|.+.|..+..... +... . ........+++++|++++++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 99887766 456789999984332211 1100 0 00112223689999998777643 35799
Q ss_pred EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecCCCcc
Q 001168 1043 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~~~~~ 1104 (1134)
++|..+++.+.++... ..+.+++|+| ||+ ++++.. .+++|.++|+.+.+.
T Consensus 354 VID~~T~kvv~~I~vg-----------~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 354 VLNAETGERINKIELG-----------HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEETTTCCEEEEEEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEECCCCeEEEEEECC-----------CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 9999999999988533 3467899999 677 788877 599999999998883
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=2.9e-10 Score=124.75 Aligned_cols=247 Identities=10% Similarity=0.052 Sum_probs=163.6
Q ss_pred CCCeeEEEEecCCCeEEEE-------EeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECC
Q 001168 346 GSNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
-....+++|+++|. ++++ +..++.|.+||..+++.... . . ....++...+.++++++
T Consensus 17 ~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEECS
T ss_pred CCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEEec
Confidence 34678999999997 6666 56788999999887764321 0 0 00123456789999999
Q ss_pred C-CCEEEEEeCCCeEEEEEcCCCCcccc-eeEeec-ccCCeeEEEEecCCCcEEEEEEcCC---------------CcEE
Q 001168 419 D-GLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIK 480 (1134)
Q Consensus 419 d-g~~las~~~dg~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d---------------~~i~ 480 (1134)
+ |+++++. ..+.|.+||.+ ++.... .....+ ....+.+++++++|. +.++...+ +.|.
T Consensus 81 ~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 81 DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEE
Confidence 9 7655554 44479999988 543211 100001 123588999999998 56665544 5677
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEee--ccCCccEEEE-EecCCeEEEEEcc-CCCc-----eeEecCCC-CcEEEEEEC
Q 001168 481 VWDVVAGRKQYTFEGHEAPVYSVCPH--HKESIQFIFS-TAIDGKIKAWLYD-YLGS-----RVDYDAPG-NWCTMMAYS 550 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~--~~~~~~~l~s-~~~d~~i~~wd~~-~~~~-----~~~~~~~~-~~v~~~~~s 550 (1134)
.||.. ++.... ..+......++++ .+.++..++. ...++.|.+||+. .+.. ...+..+. ..+..++++
T Consensus 157 ~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 157 CFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 88765 554332 2344456788887 1134455544 4568999999986 3321 12233333 568899999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE-eCCCeEEEEECCC
Q 001168 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDN 619 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 619 (1134)
++|+..++... ++.|.+||..+++.+..+..+.. .+.+++|+++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988877642 56799999987877777766544 78899999999966554 4668899999864
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=2.7e-10 Score=128.95 Aligned_cols=251 Identities=12% Similarity=0.034 Sum_probs=166.6
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC--cEEEEEcCCceE
Q 001168 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg--~i~iwd~~~~~~ 916 (1134)
-.....++++++|+++++.. ++.|++||..++.......... ... ++|++ +++.|+++..++ .|.+|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34578999999999777666 6899999999887766655433 233 99999 888888887766 799999876654
Q ss_pred EEEe----cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCce-EEEEcCCCcEEEE
Q 001168 917 KTKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET-KVQFHNDQTHLLV 991 (1134)
Q Consensus 917 ~~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~fspdg~~l~~ 991 (1134)
...+ ..+...+.+++++|++..|..+..++.|+.||..++........ ...+... .... .++|+|++..|.+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~~g~~~--~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-ELSGSLG--TNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CCCSCCC--CSSCCEEEEETTTTEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cccCCCC--CCccccEEEeCCCCEEEE
Confidence 3344 22456678999999544555577788999999987653211000 0111111 1123 9999996554444
Q ss_pred E--ECCeEEEEeCCCccccccCCCC---C---------CCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceeeecC
Q 001168 992 V--HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~~~~~~~~~~---~---------h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+ .++.|+.|+.++... .+.... + .......++|+++|+++++-+ .+++|+.|++.+|.... +.
T Consensus 284 ~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VA 361 (409)
T ss_dssp EETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EE
T ss_pred EeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-Ee
Confidence 3 468899999865522 221110 0 124578999999999777777 78999999988886432 22
Q ss_pred Ccccccc---c--ccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001168 1057 PSAYIPT---Y--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1057 ~~~~~~~---~--~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
.+..... + ....-..|.++++++ +++++++...++.|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 1100000 0 001124688999999 5888998888889988765
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=8.6e-10 Score=124.81 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=163.3
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
...++++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999997 777777789999999987764321 111 22233 9999999999998
Q ss_pred eCCC--eEEEEEcCCCCcccceeEeec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE----ecCCCCC
Q 001168 427 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 499 (1134)
Q Consensus 427 ~~dg--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~----~~~h~~~ 499 (1134)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999876554322111112 446688999999655 344467788999999887764322 2222222
Q ss_pred e--EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC---------------CCcEEEEEECCCCCEEEEEeeC
Q 001168 500 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---------------GNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 500 v--~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
- ..++|+|.. +.++++-..++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998853 367777778899999987643 2222222 13478999999999666543
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCcc--------------CcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001168 563 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
.++..|+.|+..++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 03678999998777643 333320 124778999999877777778888888765
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=3.6e-10 Score=138.20 Aligned_cols=250 Identities=11% Similarity=0.043 Sum_probs=163.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCC----CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..+..++|||||++++.+.+.. ..|++||+.+++.+.. . + +......++|+ ||+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GNEG 187 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TTTE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CCCE
Confidence 4688899999999665544433 4799999999875431 0 0 11123578999 9999
Q ss_pred EEEEeCCC-------------eEEEEEcCCCCccc-ceeEeec-ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECC
Q 001168 423 LGVAFSKH-------------IVHLYTYNPTGELR-QHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVV 485 (1134)
Q Consensus 423 las~~~dg-------------~i~iwd~~~~~~~~-~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~ 485 (1134)
|+.++.+. .|++|++.++..-. .+..... |...+..+.|+|||+.+++.+.. .++.|++||+.
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence 99998774 49999998765321 1112223 44557889999999953222221 23589999998
Q ss_pred CCe-eeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEE
Q 001168 486 AGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 486 ~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
++. ....+..+....... +++.++ .+++....+ +.|..+|+.+... ...+..+...+. .|+++++.|+..
T Consensus 268 ~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp STTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 764 345666666666554 444432 444555443 6799999987654 234444555554 899999998877
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC----CeEEEEECCCCeeE
Q 001168 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 623 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1134)
... ++...|++|++..+ ....+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 344 ~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 344 YMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 642 23447999998754 4455543333357777788888776665433 88999999887643
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=2.9e-10 Score=126.04 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=172.7
Q ss_pred CCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2344677776644322 111111 01234667899999999998776
Q ss_pred EEeC-----CCeEEEEEcCCCCcccceeEee----cccCCeeEEEEecCCCcEEEEEEc---CCCcEEEEECCCCeeeEE
Q 001168 425 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 425 s~~~-----dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~d~~~~~l~sg~---~d~~i~iwd~~~~~~~~~ 492 (1134)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999987654322 221 12345689999987653 455555 688999999999988777
Q ss_pred ecCCCCCeE-EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001168 493 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 493 ~~~h~~~v~-~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++|+|+|+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 766532211 122322 346677777788876663 136789999999998887541 234555
Q ss_pred EeCC---CCe-----eEE--EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001168 572 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1134)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ .......++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1111111 3456899999998888888999999999666654433322 22356889999
Q ss_pred cCCCEEEEEeCC
Q 001168 642 KEGSLLAVTTSD 653 (1134)
Q Consensus 642 ~d~~~l~~~~~d 653 (1134)
+++.++++.+..
T Consensus 300 ~~g~l~v~~~~~ 311 (343)
T 2qe8_A 300 SDGYLYFDCNQL 311 (343)
T ss_dssp TTSCEEEEECCG
T ss_pred CCCcEEEEeCcc
Confidence 988877776544
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=9e-10 Score=119.36 Aligned_cols=227 Identities=8% Similarity=0.081 Sum_probs=153.5
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
--.+..|+|++..++++...++.|..||..+++... ......+.+++++++|+++++.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~~- 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVATI- 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEEE-
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEEE-
Confidence 456899999777788888888999999998765421 1134579999999999965543
Q ss_pred CCCeEEEEEcCCCCcccceeEeec--ccCCeeEEEEecCCCcEEEEEE-cC--------CCcEEEEECCC-CeeeEEecC
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVVA-GRKQYTFEG 495 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~sg-~~--------d~~i~iwd~~~-~~~~~~~~~ 495 (1134)
++.|.+||.++++... ...... ....+++++++|+|+ ++++. .. ...-.||.+.. ++.. .+..
T Consensus 72 -~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp -TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred -CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 5679999998764321 111111 123578999999998 44443 21 12334554442 4332 3333
Q ss_pred CCCCeEEEEeeccCCccEE-EEEecCCeEEEEEcc--CCCce-----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCC
Q 001168 496 HEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1134)
+......++|+|++ +.+ ++.+.++.|.+||++ ++... ..+.........++++++|++.++.. +.+
T Consensus 147 ~~~~pngi~~spdg--~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~----~~~ 220 (297)
T 3g4e_A 147 QVDISNGLDWSLDH--KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY----NGG 220 (297)
T ss_dssp EESBEEEEEECTTS--CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE----TTT
T ss_pred ccccccceEEcCCC--CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc----CCC
Confidence 44556789998755 544 556678999999984 33221 12222335678999999998777664 256
Q ss_pred cEEEEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEEeC
Q 001168 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1134)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 608 (1134)
.|..||..+++.+..+..... .+++++|. |+++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 799999999999988887654 78999998 88887766553
No 218
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.26 E-value=1.5e-05 Score=94.55 Aligned_cols=534 Identities=10% Similarity=-0.026 Sum_probs=289.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001168 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++.+-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 34443 55678999998654221 11121 2346789999997774 455666788999999765443333332334567
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001168 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
.+++.+.. +.+.++-...+.|.+.+++.................+++.|....|+.... ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 88886543 256666667789999998765544444344456789999997666665532 125678888876443333
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001168 582 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.... .. ....++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~-~~-~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN-VG-RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS-CS-SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC-CC-CcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 2322 22 577899999887777765 667899999976544 333322 22346777764 44444545578898888
Q ss_pred CCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccC-cccc
Q 001168 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD-VKPR 739 (1134)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 739 (1134)
..++. ....+........ .+.. +.+..+....+.....+ ...+.+.... +.+.
T Consensus 235 k~tg~-~~~~l~~~~~~p~------------~i~v------------~~~~~q~~~n~C~~~ng-~C~~~C~~~~~~~~~ 288 (628)
T 4a0p_A 235 KTSGQ-NRTIIQGHLDYVM------------DILV------------FHSSRQSGWNECASSNG-HCSHLCLAVPVGGFV 288 (628)
T ss_dssp TTTCC-SCEEEECSCCSCC------------EEEE------------ECGGGSCCCCTTTTTGG-GCSSEEEEETTTEEE
T ss_pred CCCCC-ceEEEecCCCCcc------------eeee------------eeecccccceEeccCCC-CcchhhhcCCCCCee
Confidence 77762 2222222110000 0000 00000000000000000 0000000000 1110
Q ss_pred cccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcc
Q 001168 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819 (1134)
Q Consensus 740 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 819 (1134)
..+..|... .....+|.. + ...|+.+ ....|+-..+..
T Consensus 289 C~C~~g~~l----------------------~~d~~~C~~--~-~~~Ll~s-~~~~i~~i~l~~---------------- 326 (628)
T 4a0p_A 289 CGCPAHYSL----------------------NADNRTCSA--P-TTFLLFS-QKSAINRMVIDE---------------- 326 (628)
T ss_dssp EECSTTCEE----------------------CTTSSCEEC--C-SSEEEEE-ETTEEEEECCCT----------------
T ss_pred EEcCCCcEe----------------------cccCCcCcc--c-cceeeee-ccceEEEEeccc----------------
Confidence 000000000 000111111 1 1222222 223333322210
Q ss_pred cccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEEcCCCeEEEEecC------CCCceEEEEEcC
Q 001168 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHP 891 (1134)
Q Consensus 820 ~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~ 891 (1134)
...........+ -..+.+++|.+.+..|..+. .+.|..++.........+.. ....+..+++..
T Consensus 327 ----~~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~ 398 (628)
T 4a0p_A 327 ----QQSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 398 (628)
T ss_dssp ----TCCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEET
T ss_pred ----ccCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeec
Confidence 000000111122 45688999999888777776 58899998865433333322 234688999998
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEEEEec-CCCEEEEEcCCC--cEEEEeCCCcccccceeeecC
Q 001168 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRFIQAP 967 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l~~s~-d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~~~ 967 (1134)
..+++..+-+..+.|.+.++. |+....+ ........+|++.| .|.+..|-.... .|...+++.... . .+...
T Consensus 399 ~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~--~l~~~ 474 (628)
T 4a0p_A 399 YSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-E--VLFFS 474 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-E--EEECS
T ss_pred cCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-E--EEEec
Confidence 335555566677899999986 4444443 33456689999999 555555533332 466566654331 1 11111
Q ss_pred CCCCCCCcCceEEEEcCCCcEEEEEE--CCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001168 968 AGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 968 ~~~~~~~~~v~~~~fspdg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
. ...+..+++.++++.|..+. .+.|...++++...+.+... ......++++.. +.+.++-...+.|...|
T Consensus 475 ~-----l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 475 G-----LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp S-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred c-----CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence 1 13568999999988877753 57899999966655554421 134567777755 55556665677898899
Q ss_pred CCCcceeeecC
Q 001168 1046 AETLRFRCRIG 1056 (1134)
Q Consensus 1046 ~~~~~~~~~~~ 1056 (1134)
..+|+....+.
T Consensus 547 k~~G~~~~~i~ 557 (628)
T 4a0p_A 547 MTGREGRTKVQ 557 (628)
T ss_dssp TTSSSCCEEEE
T ss_pred CcCCCCcEEEe
Confidence 88877554443
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=4.9e-09 Score=113.54 Aligned_cols=230 Identities=11% Similarity=-0.006 Sum_probs=156.7
Q ss_pred CCcCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001168 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+..---+..|+|++. ++++...++.|..||..++... .+ .....+.+++++++|+ ++++. ++.|.+||..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 334456889999654 5556667899999999886531 22 2456799999999998 45543 5689999998
Q ss_pred CCeeeEEecC----CCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEccCCCceeEecCCCCcEEEEEECCC
Q 001168 486 AGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 486 ~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
+++....... ....+..++++++ |.++++...+ ..-.+|.++.......+.........++|+||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 8875432221 1234778888764 4665554321 33456655543333333333345688999999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeC--CCCeeE-----EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001168 553 GTRLFSCGTSKEGESHLVEWNE--SEGAIK-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~--~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
++.++.+.. ..+.|.+|++ .++... ..+..... ....++++++|+..++....+.|.+||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876643 3567999987 455432 22222222 577899999998888877888999999999999988
Q ss_pred EeCCCCCCCcceEEEc-cCCCEEEEEeCC
Q 001168 626 VDADGGLPASPRLRFN-KEGSLLAVTTSD 653 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s-~d~~~l~~~~~d 653 (1134)
+..+. ..+.+++|. |+++.|++++..
T Consensus 236 i~~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred EECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 87653 368999998 888877776654
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=4.5e-10 Score=137.33 Aligned_cols=244 Identities=11% Similarity=0.126 Sum_probs=161.5
Q ss_pred cCCcCeEEEEECCCCCEEEEEe-----CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCC---
Q 001168 406 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--- 477 (1134)
+|...+..++|||||++||.+. ....|++||+.+++.+.. .+. ......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666789999999999999643 235799999999875432 111 1113678999 999 566666553
Q ss_pred ----------cEEEEECCCCee----eEEecC-CCCCeEEEEeeccCCccEEEEEec----CCeEEEEEccCCC-ceeEe
Q 001168 478 ----------MIKVWDVVAGRK----QYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 537 (1134)
Q Consensus 478 ----------~i~iwd~~~~~~----~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~~~ 537 (1134)
.|++|++.++.. +..... |...+.++.+++++ ++|+.... +..|++||+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987653 333333 45567788887754 66654432 2589999998764 34445
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCccCcceEEEEEeCCCCEEEEEeC-CC--eE
Q 001168 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 612 (1134)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 612 (1134)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555444444 6778887776654322357899999987654 344555554 333 88999998887664 43 68
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC----CcEEEEECCCc
Q 001168 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 664 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d----g~i~iw~~~~~ 664 (1134)
++|++..+ ....+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998754 444554332 2345667778888877666554 78999998776
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=2.5e-10 Score=125.38 Aligned_cols=183 Identities=9% Similarity=0.072 Sum_probs=135.5
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
+++.+++++... ++++|+.+ .+.+|++..........-. ..+......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~---------~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDST---------PLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSC---------CCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccc---------cccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 699999999998 67778776 5556998765421110000 000001223556 999999 99999999
Q ss_pred CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 45567888988877654 27778999999999999887653 456899999988
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCc--eeEe------c---CCCCcEEEEEECCCCCEEEEEe
Q 001168 508 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
++ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 64 68899999999999887664 4444 2 3567999999999999988654
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=9.6e-11 Score=128.67 Aligned_cols=174 Identities=11% Similarity=0.073 Sum_probs=133.3
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEEcCCCe-----------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q 001168 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-----------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i 908 (1134)
...+..+++++...++++|+...+.+|++++.. ...... +.. |+.++| ++++|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 446889999999999999996688889976433 112222 455 999999 57888888 8899999
Q ss_pred EEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcE
Q 001168 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1134)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1134)
||+.+.........|..++.++.+.+.. +++++.||+|.+||++++.... +. ..|++++|||+| .
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-L 175 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-E
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-e
Confidence 9998776666677788889888876553 8889999999999999876421 11 368999999999 4
Q ss_pred EEEEECCeEEEEeCCCcc---ccccCC------CCCCCCCeEEEEEccCCCEEEE
Q 001168 989 LLVVHESQISVYDSKLEC---SRSWSP------KDALPAPISSAIYSCDGLLVYA 1034 (1134)
Q Consensus 989 l~~~~d~~v~vwd~~~~~---~~~~~~------~~~h~~~v~~v~~s~dg~~l~~ 1034 (1134)
.+...||++++|+..+.. .+.+.. ..+|...|.+|+|.++++++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 444689999999985544 333311 1246789999999999998876
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.21 E-value=2.5e-09 Score=116.36 Aligned_cols=234 Identities=11% Similarity=0.037 Sum_probs=158.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.....+.+|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 45577899999999888888888999999987 343211 223556789999999999777
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeecc-cCCeeEEEEecCCCcEEEEE----EcC-------------CCcEEEEECCC
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 486 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s----g~~-------------d~~i~iwd~~~ 486 (1134)
+...++.|.+|+.+ ++.........+. ...+.++++.++|. +.+| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 76667889999986 4322111111111 23477899999998 6665 332 35688888777
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCc---eeEecCCCCcEEEEEECCCCCEEE
Q 001168 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
++..... .......++|+|++ ..|+.+... +.|.+|++..... .............++++++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654433 44556788997754 666666554 7899999875431 111122233456789999999555
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001168 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
+. . + .|.+|+. +++.+..+.... .+.+++|+++++.|+.++.++ ++.++
T Consensus 255 ~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 255 SS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 43 1 2 3999998 577777776554 477899999998888887654 44333
No 224
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.21 E-value=5.6e-06 Score=98.19 Aligned_cols=526 Identities=10% Similarity=-0.001 Sum_probs=268.5
Q ss_pred CCCeEEEEEcCCCC-cccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeEEEEe
Q 001168 428 SKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~i~~ 505 (1134)
....|+..++.+.. ... .+...-.....++|++.+.. ++.+-...+.|..+++..... ...+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567888877542 111 11223445789999997774 444555577899999765432 2233333356888998
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001168 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
.+.. +.+.++-...+.|.+.+++.................+++.|.+.+|+.... ...+.|...++.... ...+..
T Consensus 92 D~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~-~~~l~~ 167 (619)
T 3s94_A 92 DWLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSS-RFIIIN 167 (619)
T ss_dssp ETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCS-CEEEEC
T ss_pred EecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCc-eEEEEe
Confidence 7643 256666667899999999865544444344456778999998777665532 123567777765332 222221
Q ss_pred ccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001168 586 FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..-...+.+++++++..|+.+. ..+.|...|+............ ......+++..+ .++++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 1222567899999877776654 5678999998765443333211 123457777655 44444445778999998777
Q ss_pred hhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccc-cC-ccccccc
Q 001168 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL-VD-VKPRVAE 742 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 742 (1134)
.. ...+........ .+. .+.+..+...........-...+.+.. +. ..+...+
T Consensus 245 ~~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C 299 (619)
T 3s94_A 245 EG-LREIHSDIFSPM------------DIH------------AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 299 (619)
T ss_dssp CC-CEECCSCCCCCS------------EEE------------ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEEC
T ss_pred cc-cEEEecCCCCCc------------EEE------------EEccccCCCccccccCCCCcccceEECCCCCCCceEeC
Confidence 32 222211100000 000 000000000000000000000000000 00 0000000
Q ss_pred ccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCccccc
Q 001168 743 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1134)
Q Consensus 743 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~ 822 (1134)
..|....- ...+|.. ....+|+. +..+.|+..++....
T Consensus 300 ~~g~~l~~----------------------d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~----------------- 337 (619)
T 3s94_A 300 PTGVKLLE----------------------NGKTCKD--GATELLLL-ARRTDLRRISLDTPD----------------- 337 (619)
T ss_dssp CTTCCBCT----------------------TSSCBCS--SCSEEEEE-EESSCEEEEESSSTT-----------------
T ss_pred Cchheecc----------------------cCcccCC--CCceEEEE-EcccceEEEecCCCc-----------------
Confidence 00000000 0000000 00111222 223344444432111
Q ss_pred CCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE
Q 001168 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900 (1134)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg 900 (1134)
.......+.+ -..+.+++|.+.+..|..++ .+.|..++++.......+.........+++.+.++++..+-
T Consensus 338 ---~~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 338 ---FTDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp ---CCCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred ---cceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 0111111222 34578899999777776665 68899999876443333433345677899987355566655
Q ss_pred eCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCcCce
Q 001168 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 978 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~ 978 (1134)
+..+.|.+.++........+...-....+|++.|....|..+. ....|...+++.... . .+... . .....
T Consensus 411 ~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~-~l~~~---~---l~~P~ 482 (619)
T 3s94_A 411 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-V-VLVNT---S---LGWPN 482 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E-EEECS---S---CSCEE
T ss_pred CCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-E-EEEeC---C---CCCCe
Confidence 5678999999875433222333345678999999744444443 235666666664331 1 11111 0 13578
Q ss_pred EEEEcCCCcEEEEE--ECCeEEEEeCCCccccccCC-CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001168 979 KVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSP-KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 979 ~~~fspdg~~l~~~--~d~~v~vwd~~~~~~~~~~~-~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
.+++++++..|..+ ..+.|..+++++...+.+.. ...|. .++++..+ .+.++-...+.|...|..+|.
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P---~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHI---FGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSS---CCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCc---EEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 99999988777775 45789999986655444322 22222 34555443 444444455678888887773
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.20 E-value=3.5e-09 Score=128.15 Aligned_cols=381 Identities=12% Similarity=0.065 Sum_probs=215.8
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCC----------e-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001168 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|+.+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5777778899999999999998887643221 0 11122 2268888999999999999999988766
Q ss_pred cCC-C-CcEEEEEECC---CCCEEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCcc-----------------------
Q 001168 538 DAP-G-NWCTMMAYSA---DGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFR----------------------- 587 (1134)
Q Consensus 538 ~~~-~-~~v~~~~~s~---~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 587 (1134)
... . .....+..+| ++ .++++.... ..++.|+.||..+|+.+-.+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1111111122 44 444443211 136789999999999887765211
Q ss_pred -------CcceEEEEEeCCCCEEEEEeCCCe-------------------EEEEECCCCeeEEEEeCCCCC-------CC
Q 001168 588 -------KRSLGVVQFDTTRNRFLAAGDEFQ-------------------IKFWDMDNMNMLTTVDADGGL-------PA 634 (1134)
Q Consensus 588 -------~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 634 (1134)
......++++|++..++.+..++. |..||..+|+.+-.++...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 001125788999999999887763 999999999999888653221 11
Q ss_pred cceEEEccCCC---EEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCC
Q 001168 635 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (1134)
Q Consensus 635 v~~~~~s~d~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1134)
........+|+ .++.++.+|.++++|..+|+ ++........ . |..
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~--~----------------------------w~~- 354 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE-LLSAKGIVPQ--S----------------------------WTK- 354 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCC--S----------------------------SEE-
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC-Eecccccccc--c----------------------------ccc-
Confidence 11112223565 78889999999999999993 3322111000 0 000
Q ss_pred CCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeee
Q 001168 712 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (1134)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 791 (1134)
.+ +. ..+..+... . ..|.... ....+..|.......-..++++|+..++++..
T Consensus 355 ------------~~---~~---~~~~pi~~~--~--~~~~~~~-----~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~ 407 (689)
T 1yiq_A 355 ------------GM---DM---KTGRPILDE--E--NAAYWKN-----GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPA 407 (689)
T ss_dssp ------------EE---ET---TTTEEEECH--H--HHCTTTS-----SSCEEESSCTTCSSCSSCCEEETTTTEEEEEE
T ss_pred ------------cc---Cc---cCCCcccch--h--hccccCC-----CCeeEeCCCcccccCCCcceECCCCCEEEEec
Confidence 00 00 000000000 0 0000000 00112233321223345689999999888887
Q ss_pred ccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC---CCEEEEEe-CCeEEEEE
Q 001168 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS-GGKVSLFN 867 (1134)
Q Consensus 792 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d---g~~la~~s-dg~i~vwd 867 (1134)
.+....++...... .|....+.. . .+.. +...|. +....... +|.|..||
T Consensus 408 ~~~~~~~~~~~~~~--------------~~~~~~~~~---------~-~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 408 HIMSAYYEHIPEAP--------------KRNPFKSMY---------Q-LGLR--TGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp EECCEEEECCSSCC--------------CCCSCTTSC---------C-CSSE--ECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred cccceeeeeccccc--------------ccccccccc---------c-cCcc--ccccCcccccCCCCCCCcceeEEEEE
Confidence 77555544321100 011000000 0 0000 000010 00000001 47899999
Q ss_pred cCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc-eEEEEEecCCCEEEE
Q 001168 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVS 941 (1134)
Q Consensus 868 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s 941 (1134)
+.+++.+..+..+.. +..-.++. .+.++++|+.||.++.||..+|+.+..++...+. ..-+.|+.||+..+.
T Consensus 462 ~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 999999988875443 33335555 6678889999999999999999999988754332 244677888874443
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=5.9e-09 Score=114.50 Aligned_cols=223 Identities=13% Similarity=0.013 Sum_probs=150.1
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
-..+++|+|++..+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 356889999877788888888999999998765321 1 123569999999999887765
Q ss_pred CCCeEEEEEcCCCCcccceeEee-c-ccCCeeEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeeeEEecCCCCC
Q 001168 428 SKHIVHLYTYNPTGELRQHLEID-A-HVGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~l~~s~d~~~~~l~sg~~------d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
.+ .|.+||..+++... ..... + ....+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998775321 11111 1 123588999999998 4444332 24566666 55543 33233445
Q ss_pred eEEEEeeccCCccEE-EEEecCCeEEEEEcc--CC-Cc-----eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001168 500 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
...++|++++ +.+ ++.+.++.|.+||++ ++ .. ...+.........++++++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6788887754 555 444567899999986 43 21 112222345678899999998777654 256799
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEEe
Q 001168 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1134)
+||. +++.+..+..... .+.+++|+ ++++.|++++
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 9998 6777777776554 68999998 8888776654
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.19 E-value=2.3e-09 Score=118.86 Aligned_cols=267 Identities=9% Similarity=0.039 Sum_probs=163.0
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc------cCcceEEEEEeCCCCEEEEEeC-----CC
Q 001168 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAGD-----EF 610 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-----dg 610 (1134)
..+..++++++|+.+++..... ++.+.+|.+.+++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--QPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--CCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCC--CCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 5688999999999988864211 22134444435543 333211 1126889999999876665433 57
Q ss_pred eEEEEECCCCeeEEEEeCCCC----CCCcceEEEccCCCEE-EEEe---CCCcEEEEECCCchhhhhhccCCccccCCCC
Q 001168 611 QIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLL-AVTT---SDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l-~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
.|.+||+.+++.+..+..... ...+..+++++++..+ ++.. .++.|.+||..++ +..+.+.+|....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~---- 168 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIA---- 168 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTS----
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccc----
Confidence 899999999998887764321 1245889999865454 4444 5789999998877 3333332211000
Q ss_pred CCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCcccee
Q 001168 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
T Consensus 169 -------------------------------------------------------------------------------- 168 (343)
T 2qe8_A 169 -------------------------------------------------------------------------------- 168 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCc
Q 001168 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~ 842 (1134)
... ..+.++|..+.+...++.++.| ...
T Consensus 169 ---------~~~---~~~~~~g~~~~~~~~~g~~~~~----------------------------------------~~~ 196 (343)
T 2qe8_A 169 ---------PED---IDLVIDGVPVQIGQPDGTVIRP----------------------------------------HLG 196 (343)
T ss_dssp ---------CCS---CCCEETTEECBEECTTSCEECC----------------------------------------CCC
T ss_pred ---------ccc---cceeECCEEEEeccCCCceece----------------------------------------ecc
Confidence 000 1122344444444455554443 223
Q ss_pred eEEEEeccCCCEEEEEe-C-CeEEEEEcC---CCe-----EEE--EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001168 843 AACIALSKNDSYVMSAS-G-GKVSLFNMM---TFK-----VMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s-d-g~i~vwd~~---~~~-----~~~--~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
+..++++|||+.|+++. . ..+..++.. .+. ... ...++......+++++ +|+++++...++.|.+||
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEE
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEE
Confidence 56788999998888776 4 345555432 110 000 1112333566799999 889999888899999999
Q ss_pred cCCceEEEEecC-cccceEEEEEecCCCEEEEEcCCCcEE
Q 001168 911 VRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 911 ~~~~~~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
..+++....... +.....+++|.++++++++.+..+.+.
T Consensus 276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 856764333332 245688999999999888877655443
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=5.9e-09 Score=125.94 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=129.3
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCC----------e-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001168 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|+-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 5677777899999999999998877643211 1 12222 2268888899999999999999988877
Q ss_pred cCC-C----CcEEE-EEECCCCCEEEEEeeCCC--CCCcEEEEeCCCCeeEEEecCccCc--------------------
Q 001168 538 DAP-G----NWCTM-MAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR-------------------- 589 (1134)
Q Consensus 538 ~~~-~----~~v~~-~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~-------------------- 589 (1134)
... . ..+.+ ... .+..+++++...+ .++.|+.+|..+|+.+.++......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 2 11111 111 2345555442111 2578999999999998777543210
Q ss_pred -----------ceEEEEEeCCCCEEEEEeCCC-------------------eEEEEECCCCeeEEEEeCCCCC-------
Q 001168 590 -----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL------- 632 (1134)
Q Consensus 590 -----------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~------- 632 (1134)
....++++|++..++.+..++ .|..+|..+|+.+-.++...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 113578899999999877654 5999999999999887653221
Q ss_pred CCcceEEEccCC---CEEEEEeCCCcEEEEECCCc
Q 001168 633 PASPRLRFNKEG---SLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 633 ~~v~~~~~s~d~---~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.....+....+| ..++.++.+|.++++|..+|
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 112222333477 68899999999999999999
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=7.2e-10 Score=121.65 Aligned_cols=267 Identities=9% Similarity=-0.022 Sum_probs=171.9
Q ss_pred CeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe-------
Q 001168 359 QTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF------- 427 (1134)
Q Consensus 359 ~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~------- 427 (1134)
.+++++...++ +|.+.|..+++.+.+ +.....+ .+++||||+++.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~-------------------i~vG~~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEE-------------------EeCCCCC--ceEECCCCCEEEEEcccccccc
Confidence 34556655555 888999999987764 1112234 799999999999986
Q ss_pred ---CCCeEEEEEcCCCCcccceeEeecc-------cCCeeEEEEecCCCcEEEEEEc--CCCcEEE--EECCCCeeeEEe
Q 001168 428 ---SKHIVHLYTYNPTGELRQHLEIDAH-------VGGVNDIAFAHPNKQLCIVTCG--DDKMIKV--WDVVAGRKQYTF 493 (1134)
Q Consensus 428 ---~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~~s~d~~~~~l~sg~--~d~~i~i--wd~~~~~~~~~~ 493 (1134)
.++.|.+||..+++.+.. +..+ ......++|+|||++ ++.+. .+..|.+ +|+.+ +.++
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~---I~v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i 162 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLT 162 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEE
T ss_pred cCCCCCEEEEEECCCCCEEEE---EECCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEE
Confidence 368899999999887763 3222 123568999999995 44443 3567888 99877 4444
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC----CCcee-----EecCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001168 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
..- +. ..+.|.+. ..+++.+.|+.+.+.|+.+ ..... .+.....+. . ++++..++..+.
T Consensus 163 ~v~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~--- 230 (368)
T 1mda_H 163 KSA-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA--- 230 (368)
T ss_dssp ECS-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS---
T ss_pred ECC-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC---
Confidence 321 11 12334433 4556677888888888876 22111 011112233 3 566666665542
Q ss_pred CCCcEEEEeCCCCe--eEEEecCcc------C---cceEEEEEeCCCCEEEEEeC---------CCeEEEEECCCCeeEE
Q 001168 565 GESHLVEWNESEGA--IKRTYSGFR------K---RSLGVVQFDTTRNRFLAAGD---------EFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~--~~~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~ 624 (1134)
+.+.+.|..++. .+..+.... . .....+.++|++++++++.. ++.+.++|+.+.+.+.
T Consensus 231 --~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~ 308 (368)
T 1mda_H 231 --SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp --SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred --CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence 568889986532 333322110 0 01222689999998887533 2356699999999988
Q ss_pred EEeCCCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCchhhhhhcc
Q 001168 625 TVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
.+.... ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 309 ~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 309 PISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp CCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred EEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 876543 468999999998 456666 5899999999998 5555544
No 230
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=3.1e-08 Score=108.63 Aligned_cols=222 Identities=15% Similarity=0.060 Sum_probs=147.4
Q ss_pred eEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee
Q 001168 411 VNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1134)
Q Consensus 411 V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~ 489 (1134)
..+.+|+|++. ++++...++.|..||..+++.. .+. +...+.+++|+++|+ ++++. . ..|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCcE
Confidence 45678999755 5556667889999999876422 222 346799999999997 55544 3 3599999988875
Q ss_pred eEEecC----CCCCeEEEEeeccCCccEEEEEec------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 001168 490 QYTFEG----HEAPVYSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 490 ~~~~~~----h~~~v~~i~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
...... ....+.++++++++ .++++... .+.|..++ + .....+.........++|+||++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--K-GKVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--T-TEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--C-CcEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 432221 12357888887654 66555432 24455554 3 3332222223356789999999988766
Q ss_pred eeCCCCCCcEEEEeCC--CC-ee-----EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001168 560 GTSKEGESHLVEWNES--EG-AI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
.. .++.|.+|+.. ++ .. ...+..... ....++++++|+.+++...++.|.+||. +++.+..+..+.
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~- 270 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG- 270 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC-
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC-
Confidence 42 35679999986 55 32 222322222 5678999999988877767789999998 577777776553
Q ss_pred CCCcceEEEc-cCCCEEEEEeCC
Q 001168 632 LPASPRLRFN-KEGSLLAVTTSD 653 (1134)
Q Consensus 632 ~~~v~~~~~s-~d~~~l~~~~~d 653 (1134)
..+.+++|+ +++..|++++..
T Consensus 271 -~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 -KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -SBEEEEEEESTTSCEEEEEEBC
T ss_pred -CCcEEEEEecCCCCEEEEEecC
Confidence 358899998 888877666554
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=8.5e-09 Score=124.80 Aligned_cols=200 Identities=11% Similarity=0.090 Sum_probs=127.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCcccceeEeecccC----------Ce-eEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001168 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----------GV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
+..+++++.++.|.-+|..+|+.+-. +..+.. .+ ..++. ++. .++.++.|+.|+.+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~---~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWK---YDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEE---ECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEE---EcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 56777777888999999999886542 221111 01 11222 244 57888899999999999999
Q ss_pred eeEEecCC--CCCeEEEEeecc-CCccEEEEEe------cCCeEEEEEccCCCceeEecCCC------------------
Q 001168 489 KQYTFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG------------------ 541 (1134)
Q Consensus 489 ~~~~~~~h--~~~v~~i~~~~~-~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~------------------ 541 (1134)
.+..+... ......+...|. .+ ..++.++ .++.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98776542 111111111110 02 3444443 37899999999999887654210
Q ss_pred -------------CcEEEEEECCCCCEEEEEeeCCC-----------CC----CcEEEEeCCCCeeEEEecCccC-----
Q 001168 542 -------------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK----- 588 (1134)
Q Consensus 542 -------------~~v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~----- 588 (1134)
.....++++|++..++.+..+.. ++ +.|..+|..+|+.+-.+.....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 01125788898888888764211 11 1499999999999988765311
Q ss_pred ---cceEEEEEeCCCC---EEEEEeCCCeEEEEECCCCeeEEEEe
Q 001168 589 ---RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 589 ---~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
..........+|+ .++.++.+|.++++|..+|+++....
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 1122223333564 68888999999999999999886554
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.12 E-value=9e-08 Score=107.70 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=99.2
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCC---------CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC
Q 001168 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 539 (1134)
.++.++.++.|..+|..+|+.+..+... ...+.+.. ..++..++.++.++.|..+|..+++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5777888999999999999988766542 12232221 11236788899999999999999988776655
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-----EEEEEeCCCCEEEEEeCCCeEEE
Q 001168 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~i 614 (1134)
........... +..+++++ .++.|..+|..+|+.+..+..... .. ...... +..++++..++.+..
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHT----SNGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEEC----TTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCceEcCCEEE--CCEEEEEc----CCCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 43321111221 34555554 367899999999998877765432 11 112222 457788888999999
Q ss_pred EECCCCeeEEEEeC
Q 001168 615 WDMDNMNMLTTVDA 628 (1134)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1134)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988776653
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=2.7e-08 Score=120.11 Aligned_cols=352 Identities=10% Similarity=0.055 Sum_probs=201.2
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc----------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001168 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
+..+++++. ++.|+.+|..+|+.+-++...... ....+++ ++..+++++.|+.|+.+|..+|+.
T Consensus 77 ~g~vyv~~~----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSAS----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECG----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECC----CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 445555543 567999999999998887654321 0112333 456888899999999999999999
Q ss_pred EEEEeCC-CCC--CCcce-EEEccCCCEEEEEeC------CCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcc
Q 001168 623 LTTVDAD-GGL--PASPR-LRFNKEGSLLAVTTS------DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1134)
Q Consensus 623 ~~~~~~~-~~~--~~v~~-~~~s~d~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1134)
+-.+... ... ..+.. ... .+..+++++. ++.|+.||..+|+ .+..+.........
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~-~~W~~~~~~~~~~~------------ 215 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE-RKWRWFSVPGDPSK------------ 215 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEESSCCCTTS------------
T ss_pred EeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc-EEEEeccCCCCccc------------
Confidence 9888754 210 01111 111 2345555553 6899999999993 33322211100000
Q ss_pred cccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccc
Q 001168 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1134)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1134)
....+ +.+.....|.... .... . .+..
T Consensus 216 -------------------------------------~~~~~-------~~~~g~~~w~~~g----~~~~---~--~~g~ 242 (677)
T 1kb0_A 216 -------------------------------------PFEDE-------SMKRAARTWDPSG----KWWE---A--GGGG 242 (677)
T ss_dssp -------------------------------------CCSSH-------HHHHHHTTSCGGG----CHHH---H--CEEC
T ss_pred -------------------------------------ccccc-------ccccccccccccC----ceeE---e--CCCc
Confidence 00000 0001112222000 0000 0 0011
Q ss_pred cceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC------CCceEEE
Q 001168 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT------EESAACI 846 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~------~~~i~~~ 846 (1134)
.....+++.+++..++.+..++.. |....... ..+...-...+..+|..+|+........ .|. ......+
T Consensus 243 ~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~~-~~gd~~~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~ 318 (677)
T 1kb0_A 243 TMWDSMTFDAELNTMYVGTGNGSP--WSHKVRSP-KGGDNLYLASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILA 318 (677)
T ss_dssp CCCSCEEEETTTTEEEEECCCEES--SCHHHHST-TCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEE
T ss_pred ccccceeEcCCCCEEEEECCCCcc--ccCCCCCc-cCCCCeeeEEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEE
Confidence 222357788888888877766543 43221110 0011111112445566666655432111 010 1122333
Q ss_pred EeccCC---CEEEEEe-CCeEEEEEcCCCeEEEEecCCC----------Cc-e------------------------EEE
Q 001168 847 ALSKND---SYVMSAS-GGKVSLFNMMTFKVMTMFMSPP----------PA-A------------------------TFL 887 (1134)
Q Consensus 847 ~~s~dg---~~la~~s-dg~i~vwd~~~~~~~~~~~~~~----------~~-i------------------------~~l 887 (1134)
....|| ..++.++ +|.+.++|..+++.+..+.... +. + ..+
T Consensus 319 ~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~ 398 (677)
T 1kb0_A 319 DIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (677)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred ecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence 444578 6778887 8999999999999987765221 00 1 157
Q ss_pred EEcCCCCcEEEEEeC-------------------------------------------CCcEEEEEcCCceEEEEecCcc
Q 001168 888 AFHPQDNNIIAIGME-------------------------------------------DSSVQIYNVRVDEVKTKLKGHQ 924 (1134)
Q Consensus 888 ~~s~~~~~~lasg~~-------------------------------------------dg~i~iwd~~~~~~~~~l~~h~ 924 (1134)
+|+| +..++++... .|.|..||+.+++.+..+. +.
T Consensus 399 a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~ 476 (677)
T 1kb0_A 399 SFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HV 476 (677)
T ss_dssp EEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ES
T ss_pred eEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CC
Confidence 8999 6667766543 2789999999999988876 44
Q ss_pred cceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE
Q 001168 925 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
.++.+..++.++.+++.++.|+.+++||..+++.+....+. .+. ...-+.|+.+|+.+++
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~--~~~-----~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG--TGV-----VAAPSTYMVDGRQYVS 536 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SCC-----CSCCEEEEETTEEEEE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC--CCc-----ccCCEEEEeCCEEEEE
Confidence 45556667778888999999999999999999976543322 221 2245667788886665
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=1.6e-08 Score=109.91 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=154.1
Q ss_pred cCCcCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001168 406 DAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.........+|+|+|+ +++++..++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3455677899999999 56666778999999984 43 22 3445667789999999998 6666666788999997
Q ss_pred CCCeeeEEec---CC-CCCeEEEEeeccCCccEEEE----Eec-------------CCeEEEEEccCCCceeEecCCCCc
Q 001168 485 VAGRKQYTFE---GH-EAPVYSVCPHHKESIQFIFS----TAI-------------DGKIKAWLYDYLGSRVDYDAPGNW 543 (1134)
Q Consensus 485 ~~~~~~~~~~---~h-~~~v~~i~~~~~~~~~~l~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~~~ 543 (1134)
. ++...... +. ...+..+++.+ +|.+.++ |.. .+.|..||..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 5 65332211 11 13456788866 4467775 321 256777776555544332 3345
Q ss_pred EEEEEECCCCCEEEEEeeCC--CCCCcEEEEeCCCCeeE--EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001168 544 CTMMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
...++|+||++.|+.+.... .+.+.|.+|++..+... ..+..........++++++|+..++ ..+ .|.+|+. .
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-D 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-T
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-C
Confidence 67899999999887765310 01267999998765411 1121111223456889999985444 444 5999998 5
Q ss_pred CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001168 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
++.+..+..+. .+.+++|+++++.|.+++.++..+
T Consensus 267 g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 77777776553 478899999999888888764433
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.10 E-value=1.7e-09 Score=118.60 Aligned_cols=222 Identities=7% Similarity=-0.087 Sum_probs=144.2
Q ss_pred eEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe----------CCCcEEEEEcCCceEEEEecCc-------c
Q 001168 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKLKGH-------Q 924 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~----------~dg~i~iwd~~~~~~~~~l~~h-------~ 924 (1134)
+|.++|..+++.+.++.....+ .++|+| |++++.++. .++.|.+||+.+++.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8899999999999998865555 799999 788777775 3689999999999999887633 1
Q ss_pred cceEEEEEecCCCEEEEEcC--CCcEEE--EeCCCcccccceeeecCCC-CCCCCcCceEEEE-----------------
Q 001168 925 NRITGLAFSPTLNALVSSGA--DAQLCM--WSIDKWEKLKSRFIQAPAG-RQSPLVGETKVQF----------------- 982 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~--D~~i~i--Wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~f----------------- 982 (1134)
.....++++|||++|+.+.. +..+.+ +|..+- . .+..... +..+...-..+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv---~--~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD---Q--LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE---E--EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc---e--EEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 23467999999999988764 456888 998761 1 1111000 0000000011122
Q ss_pred --------------------cCCCcE-EEEEECCeEEEEeCCCc---cccccCCCC-------CCCCCeEEEEEccCCCE
Q 001168 983 --------------------HNDQTH-LLVVHESQISVYDSKLE---CSRSWSPKD-------ALPAPISSAIYSCDGLL 1031 (1134)
Q Consensus 983 --------------------spdg~~-l~~~~d~~v~vwd~~~~---~~~~~~~~~-------~h~~~v~~v~~s~dg~~ 1031 (1134)
++++.. +.++. +.|.+.|.... .+..+.... .+......++|+||+++
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 233333 33334 66777776322 112121110 00111122689999998
Q ss_pred EEEEec-C--------CcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecC
Q 001168 1032 VYAGFC-D--------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPS 1100 (1134)
Q Consensus 1032 l~~~~~-d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~ 1100 (1134)
++++.. + +.+.++|+.+++.+.++... ..+.+++++| ||+ ++++.. .+++|.++|+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-----------~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-----------HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-----------CCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 887643 2 35679999999999887633 3467899999 565 667777 69999999999
Q ss_pred CCcc
Q 001168 1101 DAEL 1104 (1134)
Q Consensus 1101 ~~~~ 1104 (1134)
+.+.
T Consensus 346 t~kv 349 (368)
T 1mda_H 346 SDQD 349 (368)
T ss_dssp SCEE
T ss_pred CCcE
Confidence 8873
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=2.8e-08 Score=108.79 Aligned_cols=238 Identities=12% Similarity=0.076 Sum_probs=148.0
Q ss_pred cCCcceeeeec-cceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-
Q 001168 782 NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1134)
Q Consensus 782 ~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s- 859 (1134)
+++++|++.+. ++.|.++|+.+....|.-..+. . ..++... .+ ......+..+||| +++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i--e-------~~~~~~~--~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI--E-------PEEVKKV--SG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE--C-------HHHHHHH--HC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee--c-------hhhcccc--cC----CCcccceeECCCe-EEEEcCC
Confidence 77888766554 6889999975432222111000 0 0000000 01 1234567888999 555553
Q ss_pred C------CeEEEEEcCCCeEEEEecCCCC---ceEEEEEcCCCCcEEEEEe-------------------CCCcEEEEEc
Q 001168 860 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 911 (1134)
Q Consensus 860 d------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~lasg~-------------------~dg~i~iwd~ 911 (1134)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999863222 234688899 888888774 3689999999
Q ss_pred CCceEEEEecCc--ccceEEEEE--ecCCCEEEEEc------CCCcEEEEeCCCcccccceeeecCCCC---CCC-----
Q 001168 912 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPAGR---QSP----- 973 (1134)
Q Consensus 912 ~~~~~~~~l~~h--~~~i~~l~~--s~d~~~l~s~~------~D~~i~iWd~~~~~~~~~~~~~~~~~~---~~~----- 973 (1134)
.+++.+.++..- ......+.| +|+++++..++ .+++|.+|..+.++......+...... ..+
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 123455656 99999887776 456888777665432221121111100 000
Q ss_pred ----CcCceEEEEcCCCcEEEEEE--CCeEEEEeCC----CccccccCCCCC-----C------CCCeEEEEEccCCCEE
Q 001168 974 ----LVGETKVQFHNDQTHLLVVH--ESQISVYDSK----LECSRSWSPKDA-----L------PAPISSAIYSCDGLLV 1032 (1134)
Q Consensus 974 ----~~~v~~~~fspdg~~l~~~~--d~~v~vwd~~----~~~~~~~~~~~~-----h------~~~v~~v~~s~dg~~l 1032 (1134)
...+..+.+||||++|.++. .+.|.+||+. .+.+..+..... | .+.-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 13468899999999999964 6799999982 233333322100 0 1134788999999999
Q ss_pred EEEe
Q 001168 1033 YAGF 1036 (1134)
Q Consensus 1033 ~~~~ 1036 (1134)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=3.3e-09 Score=120.44 Aligned_cols=273 Identities=17% Similarity=0.113 Sum_probs=171.7
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE-e-CCCCEEEEEe------------------CCC
Q 001168 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG------------------DEF 610 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 610 (1134)
+||++++.+.. .+..|.+.|+.+.+....+..........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48899988653 46779999999999888554433335777887 5 9999999985 346
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCC
Q 001168 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
.+.+.|.++.+....+...+. ...++++|||+++++.+.+... + ..+......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~---------------- 228 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAA---------------- 228 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCC----------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhcccc----------------
Confidence 799999999999888875432 3668899999999998875321 1 000000000
Q ss_pred cccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcc
Q 001168 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1134)
.-..+.+.+....
T Consensus 229 ----------------------------------------------------~~d~v~V~~~~~~--------------- 241 (595)
T 1fwx_A 229 ----------------------------------------------------EMDHIVVFNIAEI--------------- 241 (595)
T ss_dssp ----------------------------------------------------SEEEEEEEEHHHH---------------
T ss_pred ----------------------------------------------------ccceEEEeeccce---------------
Confidence 0011111111100
Q ss_pred cccceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001168 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..+.++|+.... +.|.+.|..+.+ +......++. .....++.++|
T Consensus 242 -------~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ipv----g~~PhGv~~sP 286 (595)
T 1fwx_A 242 -------EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIPI----ANNPHGCNMAP 286 (595)
T ss_dssp -------HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEEE----ESSCCCEEECT
T ss_pred -------eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEec----CCCceEEEEcC
Confidence 001223333222 235555543210 1110001111 23445799999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCe------------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC---
Q 001168 851 NDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--- 913 (1134)
Q Consensus 851 dg~~la~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~--- 913 (1134)
||+++++++ +++|.++|+.+.+ ...... -......++|+| +|...++...|+.|.+||+++
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~ 364 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIR 364 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHH
T ss_pred CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhh
Confidence 999999887 7899999999653 333333 334578999999 776566677899999999987
Q ss_pred -------ceEEEEecCcccce-----EEEEEecCCCEEEEEcC---CCc----------EEEEeCCCcc
Q 001168 914 -------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSGA---DAQ----------LCMWSIDKWE 957 (1134)
Q Consensus 914 -------~~~~~~l~~h~~~i-----~~l~~s~d~~~l~s~~~---D~~----------i~iWd~~~~~ 957 (1134)
.+.+..+..|-.+- .++.++|||++|++... |+. -.++|+++++
T Consensus 365 ~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 365 AYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777776654321 23356899999998753 442 2789996655
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.04 E-value=1.7e-07 Score=105.37 Aligned_cols=258 Identities=11% Similarity=0.076 Sum_probs=162.8
Q ss_pred EEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 001168 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1134)
Q Consensus 362 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~ 441 (1134)
+.+++.++.|..+|..+|+.+.+... .......... .+..+++++.++.|..+|..+|+
T Consensus 106 v~v~~~~g~l~a~d~~tG~~~W~~~~-------------------~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 106 VYIGSEKAQVYALNTSDGTVAWQTKV-------------------AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC-------------------SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEEEeC-------------------CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 45577899999999999987543111 0000111111 24578888899999999999987
Q ss_pred cccceeEeecccCC-----eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC-------eEEEEeeccC
Q 001168 442 ELRQHLEIDAHVGG-----VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-------VYSVCPHHKE 509 (1134)
Q Consensus 442 ~~~~~~~~~~h~~~-----v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~-------v~~i~~~~~~ 509 (1134)
.+.. ....... ....... + . .++.++.++.|..+|..+|+.+......... +..+...|.-
T Consensus 165 ~~W~---~~~~~~~~~~~~~~~~~~~-~-~--~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 165 VKWT---VNLDMPSLSLRGESAPTTA-F-G--AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp EEEE---EECCC-----CCCCCCEEE-T-T--EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred EEEE---EeCCCCceeecCCCCcEEE-C-C--EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 6542 2211111 0122222 3 3 5777888999999999999988766532110 0001111111
Q ss_pred CccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc
Q 001168 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1134)
.+..++.++.++.+..+|..+++........ ....+.. ++..++.++. ++.|..+|..+|+.+.........
T Consensus 238 ~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 238 VNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp ETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTTTS
T ss_pred ECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccCCC
Confidence 2257888888999999999988877665532 2334433 3556666653 667999999999988776632221
Q ss_pred ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001168 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.+...... +..+++++.+|.++++|..+++.+......... ....... .+..|++++.+|.|..|+
T Consensus 310 ~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~-~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 310 LLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG-FQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTTC-BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc-ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 23333332 568888999999999999999998887753221 1112222 255788899999999886
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=1.7e-08 Score=114.54 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=162.7
Q ss_pred EEecc-----CCCEEEEEe--CCeEEEEEcCCCeEEEEecCC-CCceEEEEE-c-CCCCcEEEEEe--------------
Q 001168 846 IALSK-----NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAF-H-PQDNNIIAIGM-------------- 901 (1134)
Q Consensus 846 ~~~s~-----dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~~~~~lasg~-------------- 901 (1134)
.++|. ||+++.+.. ++.|.+.|+++.++...+.-. ......+++ + | +++++.+++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55665 999999887 578999999999988855432 245888898 5 8 788887774
Q ss_pred ----CCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCC-------------------------------
Q 001168 902 ----EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA------------------------------- 946 (1134)
Q Consensus 902 ----~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~------------------------------- 946 (1134)
.++.+.+.|.++.+.+.++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34689999999999888876322 346788999999999887553
Q ss_pred -------cEEEEeCCC--cccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE--ECCeEEEEeCCCcc---------
Q 001168 947 -------QLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLEC--------- 1006 (1134)
Q Consensus 947 -------~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~~~~--------- 1006 (1134)
.|.+.|..+ ++.. ...+.. + ....++.|+|||++++++ .+.+|.++|+....
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~-~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLF-TRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSS-EEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCeeEECcEEEEeCcccCCcee-EEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 356666665 2210 011111 1 235789999999999996 46889999994221
Q ss_pred ----ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------cceeeecCCcccccccccCCCCcc
Q 001168 1007 ----SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 1007 ----~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
...... ......++|++||...++.-.|+.|.+||+++ .+.+.++..+. .|. |....
T Consensus 320 ~~~v~~~v~v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpG----h~~~~ 390 (595)
T 1fwx_A 320 RSAVVAEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPG----HLKTV 390 (595)
T ss_dssp GGGEEECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEE----EEEET
T ss_pred ccceEEEcCC----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-ccc----cceec
Confidence 112221 45788999999994445666799999999987 44555655432 211 11122
Q ss_pred EEEeecCCCCCEEEEEeCCC--cE-----------EEEecCCCc
Q 001168 1073 LVIAPHPSEPNQIALGMSDG--AV-----------HVVEPSDAE 1103 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg--~v-----------~vW~~~~~~ 1103 (1134)
.+...+| ||++|+++..-. .+ .++|++.++
T Consensus 391 ~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 391 MGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 2345567 889999876532 23 789997666
No 240
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.01 E-value=4.8e-05 Score=90.17 Aligned_cols=207 Identities=11% Similarity=-0.004 Sum_probs=119.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
.-..+.+++|++.+..++.+-...+.|..+++........ ++...-.....+++.+.+..|.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly 99 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLY 99 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEE
Confidence 3456889999997776776666677888888875421110 1122224688999999666555
Q ss_pred EE-eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEE-cCCCcEEEEECCCCeeeEEe-cCCCCCeE
Q 001168 425 VA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVY 501 (1134)
Q Consensus 425 s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 501 (1134)
.+ ...+.|.+.++++..... .+...-.....|++.|.+.. +++|- +..+.|...++. |.....+ ...-....
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 54 567899999998643211 12233445778999998664 33332 334677777754 4333333 22345678
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001168 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++.+.. +.+.++-...+.|...|++.................+++..+ .++.+.. ..+.|...|..+++..
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 89988754 244555556778888888754433332222223346677655 5554432 3567888887776543
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=1.4e-07 Score=103.33 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=150.9
Q ss_pred e--cCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-cCeEEEEECCCCCEEEEEeCC--
Q 001168 355 H--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSK-- 429 (1134)
Q Consensus 355 s--pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~spdg~~las~~~d-- 429 (1134)
+ ++++++++.|-.++.|.|.|+.+..... ++-+... +..+..... ..-..+..+||| .++++..+
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p----~~~k~ie-----~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~ 159 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREP----KIIKVIE-----PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE 159 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTTSC----EEEEEEC-----HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCCCc----eeeeeec-----hhhcccccCCCcccceeECCCe-EEEEcCCCcC
Confidence 7 8999899999999999999997542110 0000000 000111111 134567888999 66666554
Q ss_pred ----CeEEEEEcCCCCcccceeEeeccc-CCeeEEEEecCCCcEEEEEEc-------------------CCCcEEEEECC
Q 001168 430 ----HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWDVV 485 (1134)
Q Consensus 430 ----g~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~-------------------~d~~i~iwd~~ 485 (1134)
|.|.+.|..+.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||+.
T Consensus 160 g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 160 GEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp SCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred CCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 789999999987665321 11122 2234688999999 677764 47899999999
Q ss_pred CCeeeEEecCC-C-CCeEEEEeeccCCccEEEEEe------cCCeEEEEEccCCCcee--E--ecCC-------------
Q 001168 486 AGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRV--D--YDAP------------- 540 (1134)
Q Consensus 486 ~~~~~~~~~~h-~-~~v~~i~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~--~--~~~~------------- 540 (1134)
+++.+.++.-- . .....+.|..++++.++..++ .+++|.+|..+.+.... . +...
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888887642 1 234456563444556666655 56788887665422111 1 1110
Q ss_pred ---CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC---CeeEEEecCccC-------------cceEEEEEeCCCC
Q 001168 541 ---GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRK-------------RSLGVVQFDTTRN 601 (1134)
Q Consensus 541 ---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 601 (1134)
......+.+|+||++|+++.. +.+.|.+||+.. .+.+..+..... +.-..+.++|||+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR 393 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred ccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence 245678999999999998875 567899999853 355555443210 0246689999999
Q ss_pred EEEEEe
Q 001168 602 RFLAAG 607 (1134)
Q Consensus 602 ~l~~~~ 607 (1134)
+|+++.
T Consensus 394 ~LyVaN 399 (462)
T 2ece_A 394 RVYVTN 399 (462)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999886
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.99 E-value=6.2e-09 Score=114.92 Aligned_cols=301 Identities=10% Similarity=0.079 Sum_probs=177.4
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001168 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 458 ~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
++....++. +..++.++.|..|| .+++.+..+......+.++... .+ ..+..++.+ |..+|. +++....+
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~--~~-g~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG--KD-GTIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEET--TT-TEECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEe--cC-CcEEEecCc--EEEECC-CCcEEEEE
Confidence 344555665 66777888999999 8888766555444444555543 23 345555555 888875 44443333
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001168 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
...........+. +..+..++. ++.|..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|.
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINP 164 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence 3222222223333 445555542 5679999988 777766655443 456667777776 566777899999999
Q ss_pred CCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCC
Q 001168 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1134)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1134)
. ++.+..+.... ..+.++.+.+++.+.+ ++ +.|..+| .++... .....
T Consensus 165 ~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~-~~~~~------------------------ 212 (330)
T 3hxj_A 165 D-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEK-WNFYA------------------------ 212 (330)
T ss_dssp T-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEE-EEECC------------------------
T ss_pred C-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEE-EEEcc------------------------
Confidence 8 87777666442 3567778877887554 44 7888888 554211 11000
Q ss_pred CCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEE
Q 001168 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1134)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~ 777 (1134)
....+.+
T Consensus 213 -------------------------------------------------------------------------~~~~~~~ 219 (330)
T 3hxj_A 213 -------------------------------------------------------------------------GYWTVTR 219 (330)
T ss_dssp -------------------------------------------------------------------------SSCCCSC
T ss_pred -------------------------------------------------------------------------CCcceec
Confidence 0122344
Q ss_pred EEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEE
Q 001168 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
+...++|. +.+++.++.+..++.. +. .+|.... . ...+..+.+.+++.+.+.
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~~-------g~-------~~~~~~~------------~-~~~~~~~~~~~~g~l~v~ 271 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINPD-------GT-------EKWRFKT------------G-KRIESSPVIGNTDTIYFG 271 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECTT-------SC-------EEEEEEC------------S-SCCCSCCEECTTSCEEEE
T ss_pred eEECCCCe-EEEEcCCCeEEEECCC-------CC-------EeEEeeC------------C-CCccccceEcCCCeEEEe
Confidence 55556654 4445555555555421 11 0111110 0 122233555667765554
Q ss_pred EeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001168 858 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 858 ~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
..+|.|..+|. +++.+..+......+.++...+ ++++. .|+.+|.+++.....
T Consensus 272 t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 272 SYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TCCEE-EECTTSCEEEEEC--
T ss_pred cCCCCEEEECC-CCcEEEEEEcCCccccceEEcC-CCEEE-EEcCCCeEEEEeccc
Confidence 44789999996 6777777765566677888877 66654 588999999987653
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=6.8e-10 Score=124.03 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001168 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
++..+++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67889999999999999999998765 3333 4566666667777 677788999999999999988777654321
Q ss_pred CeEEEEeeccC-CccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001168 499 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 499 ~v~~i~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
... ..+|.- ++..+++++.|+.|+.||..+++....+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 011111 23578888999999999999988877665543 2345678888888764 678999999999
Q ss_pred eeEEEecCccCcceEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001168 578 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8776654321 1223334432 5677888999999999999998877764
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=6e-08 Score=106.93 Aligned_cols=265 Identities=12% Similarity=0.017 Sum_probs=172.1
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
..+.++.+.++|. ++ .|+.+ |..+|. +++.+.... ..........+. +..|.++
T Consensus 60 ~~~~~~~~~~~g~-l~-v~t~~--l~~~d~-~g~~~~~~~-------------------~~~~~~~~~~~~--~~~l~v~ 113 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IY-FGSDK--VYAINP-DGTEKWRFD-------------------TKKAIVSDFTIF--EDILYVT 113 (330)
T ss_dssp EEEECCEETTTTE-EC-CSSCE--EEEECC-CGGGGGGSC-------------------C-----CCEEEE--TTEEEEE
T ss_pred CcccceEEecCCc-EE-EecCc--EEEECC-CCcEEEEEE-------------------CCCCcccCceEE--CCEEEEE
Confidence 3457788888886 44 35544 888885 555443211 111112222333 5567778
Q ss_pred eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001168 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
+.++.+..+|.. ++... ....+...+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...
T Consensus 114 t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 114 SMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp CTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred ecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 889999999988 55433 3333445567777777776 5667788999999988 88777766555556666553
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001168 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
. ++. +..++ +.|..+| .+++...........+.++...++|...+... ++.|..+|. +++.+..+...
T Consensus 186 ~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 K--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp T--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEECS
T ss_pred C--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeCC
Confidence 3 334 44455 8889999 66666666666666788888888887666542 456888874 56666665543
Q ss_pred cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001168 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.. .+..+.+.+++ .+..++.+|.|..+|. +++.+..+.... ..+.++...++|. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 34445565555 5667778889999996 677776666442 3567778878876 55688999999877643
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=9.2e-10 Score=122.94 Aligned_cols=258 Identities=10% Similarity=0.000 Sum_probs=136.5
Q ss_pred CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 001168 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1134)
Q Consensus 357 dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd 436 (1134)
++. .+++|+.||.|..||..+|+.+.+ . .. +.+.+..+..++..+++++.|+.|+.||
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~-------~------------~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKWT-------L------------KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEEE-------E------------EC--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEE-------e------------cC--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 344 567788999999999999987643 1 11 3344555667888888888999999999
Q ss_pred cCCCCcccceeEeecccC-Cee-EEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE
Q 001168 437 YNPTGELRQHLEIDAHVG-GVN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1134)
Q Consensus 437 ~~~~~~~~~~~~~~~h~~-~v~-~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l 514 (1134)
..+|+.+. .+..+.. .+. +..+. ++. .+++|+.|+.|+.||..+|+.+..+..+.. ..++| ++..+
T Consensus 66 ~~tG~~~w---~~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v 133 (369)
T 2hz6_A 66 SKNNEGLT---KLPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLL 133 (369)
T ss_dssp ----CCSE---ECSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------E
T ss_pred CCCCceee---eeeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEE
Confidence 98887654 2222211 111 11111 233 577888899999999999999887765542 23344 44789
Q ss_pred EEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC---CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce
Q 001168 515 FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1134)
Q Consensus 515 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1134)
++++.|+.|+.||..+++....+.... ....++.++. ..+++++ .++.++.||..+|+.+..+..... .+
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~----~dg~v~a~d~~tG~~~W~~~~~~p-v~ 206 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN----GDGLVVTVDSESGDVLWIQNYASP-VV 206 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE----TSCEEEEECTTTCCEEEEEECSSC-EE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC----CCCEEEEEECCCCcEEEEecCCCc-eE
Confidence 999999999999999888766543211 1223333332 4455554 377899999999998887764332 33
Q ss_pred EEEEEeCCCCEEEE--EeCCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEcc--CCCEEEEEeCCCcEEEEECC
Q 001168 592 GVVQFDTTRNRFLA--AGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~dg~i~iw~~~ 662 (1134)
....+++++...+. ...++.++.+|..+|+ .+....... .+. +| .+..|++++.+|.++.++..
T Consensus 207 ~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~---~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 207 AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK---ETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC---HHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc---ccc----ccccccceEEEecccCCEEecCcc
Confidence 33445555533210 0013345566665555 332222111 111 22 34567778888888887765
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=1.4e-05 Score=84.46 Aligned_cols=223 Identities=10% Similarity=0.028 Sum_probs=144.2
Q ss_pred cCeEEEEECCCCCEEEEE-eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001168 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
..+..++|++++..|..+ ..++.|..++.+++.... .+.........+++++++.. +.++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999976666555 457899999998654321 22222246789999998764 4555666789999997643
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001168 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
...............+++++.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 3222222222456888988753 34444433 468888888754333333233456789999999888877653
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001168 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
+.+.|..+|.........+.... ....++.. +..++.+. ..+.|..+|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 46789999987654433333322 23456654 45555544 66899999999999988886432 123577888887
Q ss_pred CC
Q 001168 644 GS 645 (1134)
Q Consensus 644 ~~ 645 (1134)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 247
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.77 E-value=0.0011 Score=78.74 Aligned_cols=528 Identities=8% Similarity=-0.006 Sum_probs=272.4
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE-eCCCeEEEEEcC
Q 001168 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYN 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~-~~dg~i~iwd~~ 438 (1134)
.|+++ ..+.|+.-++.+...... +....-..+..++|.+.+..|..+ ..++.|..++++
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34443 356888888876432111 001123457899999976666554 557899999987
Q ss_pred CCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001168 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
+..... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|.. ..|+.+.
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~--G~lY~tD 141 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE--GFMYWTE 141 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT--TEEEEEE
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC--CeEEEeC
Confidence 653221 22222245778999887775 44556667899999976443222222344557889998754 3444443
Q ss_pred --cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE
Q 001168 519 --IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596 (1134)
Q Consensus 519 --~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 596 (1134)
..+.|...+++........ ........++++++++.|+.+-. +.+.|...|+..... ..+..... ....+++
T Consensus 142 ~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav 215 (628)
T 4a0p_A 142 WGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQ 215 (628)
T ss_dssp CSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEE
T ss_pred CCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEE
Confidence 3567888887755544433 34557889999999888887753 466799999875433 23332222 3456777
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE-EccCCCEEEEEeCCCcEEEEECCCchhhhhhccCCc
Q 001168 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1134)
Q Consensus 597 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 675 (1134)
.. +..+++-...+.|...|..+++....+..... ....+. +++..+. + .+..- ..++ .+ .|.
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~n~C~----~~ng-~C-----~~~ 278 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-WNECA----SSNG-HC-----SHL 278 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-CCTTT----TTGG-GC-----SSE
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-ceEec----cCCC-Cc-----chh
Confidence 64 33444444678899999888776666653211 223332 2221110 0 00000 0000 00 000
Q ss_pred cccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCCccccCcccccccccccccccccCCC
Q 001168 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1134)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 755 (1134)
... .....+.+.- .. -+.+.++ ...+. +...+++.+....|+-..+...
T Consensus 279 C~~---------~~~~~~~C~C-~~----g~~l~~d----------------~~~C~-~~~~~Ll~s~~~~i~~i~l~~~ 327 (628)
T 4a0p_A 279 CLA---------VPVGGFVCGC-PA----HYSLNAD----------------NRTCS-APTTFLLFSQKSAINRMVIDEQ 327 (628)
T ss_dssp EEE---------ETTTEEEEEC-ST----TCEECTT----------------SSCEE-CCSSEEEEEETTEEEEECCCTT
T ss_pred hhc---------CCCCCeeEEc-CC----CcEeccc----------------CCcCc-cccceeeeeccceEEEEecccc
Confidence 000 0000000000 00 0000000 01111 1123344444444544443321
Q ss_pred CCccceeEEecCCcccccceEEEEEecCCcceeeeec-cceEEEeecccccCCCCCCcccccCcccccCCCCCccccccC
Q 001168 756 SDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 834 (1134)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 834 (1134)
.... ..++-. .-..+..++|.+....|+.+.. .+.|+.+++..... . +.+.....
T Consensus 328 ~~~~----~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------~------------~v~~~~~~ 383 (628)
T 4a0p_A 328 QSPD----IILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------F------------TVVVSSVP 383 (628)
T ss_dssp CCCC----EECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E------------EEEC----
T ss_pred cCce----EEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------e------------EEEEcccc
Confidence 1110 111111 2345778999887665655443 56676665421100 0 00100000
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEEcCCCeEEEEe-cCCCCceEEEEEcCCCCcEEEEEeCCC--cEEEE
Q 001168 835 ESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIY 909 (1134)
Q Consensus 835 ~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~~lasg~~dg--~i~iw 909 (1134)
+... ...+..+|+...++.|..+. .+.|.+.+++ ++....+ .........+++.|..|.+..+-.... .|...
T Consensus 384 ~~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~ 461 (628)
T 4a0p_A 384 SQNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERA 461 (628)
T ss_dssp -----CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred cccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEE
Confidence 0001 34578999999888776665 6889999986 4444443 334567899999994455444432222 56666
Q ss_pred EcCCceEEEEecCcccceEEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcE
Q 001168 910 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1134)
Q Consensus 910 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1134)
+++...........-.....|++.++++.|..+. ..+.|...+++.... . .+.. +.. ..+..++... +..
T Consensus 462 ~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r-~--~~~~--~~~---~~P~glav~~-~~l 532 (628)
T 4a0p_A 462 ALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR-I--VLED--SNI---LQPVGLTVFE-NWL 532 (628)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E--EEEC--SSC---SCEEEEEEET-TEE
T ss_pred eCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce-E--EEEc--CCC---CCcEEEEEEC-CEE
Confidence 6653333222333344568999999877766554 457888899865432 1 1111 111 2345666544 333
Q ss_pred EEE-EECCeEEEEeC
Q 001168 989 LLV-VHESQISVYDS 1002 (1134)
Q Consensus 989 l~~-~~d~~v~vwd~ 1002 (1134)
+.+ ...+.|...|.
T Consensus 533 y~tD~~~~~i~~~~k 547 (628)
T 4a0p_A 533 YWIDKQQQMIEKIDM 547 (628)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEEC
Confidence 333 23456666665
No 248
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.77 E-value=0.0019 Score=81.76 Aligned_cols=283 Identities=7% Similarity=0.039 Sum_probs=144.3
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC----CCEEEE
Q 001168 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 425 (1134)
Q Consensus 350 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd----g~~las 425 (1134)
.|+++-.+| +++.|+..|.=.+|.+.....-....+.+-+ .+ ..-++|.+++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 556666666 5777888887778777653211000001000 01 23467777776432 234554
Q ss_pred Ee---CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeeeEEec--CCC
Q 001168 426 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHE 497 (1134)
Q Consensus 426 ~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~ 497 (1134)
++ .+|.+++..-.-+-.......+. ....++.+.... ... +|+.+..+.+ .|+.+. ++.+..+. +-.
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccccc
Confidence 43 46888887543221111111232 224555555432 223 6666665655 455542 22232221 111
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001168 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+.+..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111111111111 2232222 2346667665444454555433 3566666553 4555553 24577777766
Q ss_pred CeeEEEecCccCcceEEEEEeCC------CCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc--CCCEE
Q 001168 577 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLL 647 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l 647 (1134)
++.....+..-...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54332222122337999998763 368888885 99999999998777765544321 1233443332 34578
Q ss_pred EEEeCCCcEEEEEC
Q 001168 648 AVTTSDNGIKILAN 661 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~ 661 (1134)
..|-.||.+.-+.+
T Consensus 621 ~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 621 LCALGDGALFYFGL 634 (1158)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 88888998766654
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=1.8e-06 Score=104.23 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=86.9
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcE-----------EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001168 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC-----------TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----------~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
..++.++.++.|..+|..+++.+..+....... ..+++ .+..++.++ .++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LDGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CCCEEEEEECCCCCEe
Confidence 577788889999999999998888775433210 11222 345666664 3788999999999998
Q ss_pred EEecCccC---cceE-EEEEeCCCCEEEEEeC------CCeEEEEECCCCeeEEEEeCCCCC------------------
Q 001168 581 RTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDADGGL------------------ 632 (1134)
Q Consensus 581 ~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 632 (1134)
-++..... ..+. ...+. +..++++.. +|.|+.+|..+|+.+-.+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 87765321 0111 11111 345555432 589999999999999887642110
Q ss_pred -----------CCcceEEEccCCCEEEEEeCCCc
Q 001168 633 -----------PASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 633 -----------~~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
.....+++.+++.+++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124678887788888876653
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.68 E-value=1.7e-06 Score=89.27 Aligned_cols=211 Identities=11% Similarity=0.022 Sum_probs=141.9
Q ss_pred ceEEEEeccCCCEEEEEe---CCeEEEEEcCCCeEEEEecCCCC-ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001168 842 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
....++|++|+.+.++.+ ++.|.++|+.+++.+..+.-... ....++++. +++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555543 47899999999999988753222 234566653 455555557899999999999999
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeE
Q 001168 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v 997 (1134)
.++..-... ...+++||+.|+.+..++.|.++|.++.+......+. .++
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg---------------------------~~~-- 148 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVK---------------------------YNG-- 148 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECE---------------------------ETT--
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEEC---------------------------CCC--
Confidence 888632122 2445678887777777889999999886632211110 000
Q ss_pred EEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccc---cccCCCCccEE
Q 001168 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT---YAVSNTAHPLV 1074 (1134)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 1074 (1134)
. .-.....+.|. ||+..+....++.|.+.|..+++.+.++......+. ........+.+
T Consensus 149 -------~----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 149 -------H----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp -------E----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred -------c----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 0 01235677777 776555555678999999999999998875421110 00112245678
Q ss_pred EeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1075 IAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1075 ~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
++|+|+..++++++...+.|++-++...+
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999656688888888999999886543
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=3.3e-06 Score=87.07 Aligned_cols=208 Identities=8% Similarity=-0.027 Sum_probs=139.5
Q ss_pred ccceEEEEecCCCC--eeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccccceeeccccccccccccccccCCcC
Q 001168 335 LTKTVVRTLNQGSN--VMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1134)
Q Consensus 335 ~~~~~~~~l~h~~~--V~~v~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 410 (1134)
.+.+.+.++.|... ...++|+|||. ++++.+. ++.|.+.|+.+++.+.+.. +..+ ..
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~f 67 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YF 67 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CC
T ss_pred cCceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cc
Confidence 35677888887654 68999999975 5555443 5799999999998775411 1111 11
Q ss_pred eEEEEECCCCCEEEEE-eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee
Q 001168 411 VNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1134)
Q Consensus 411 V~~i~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~ 489 (1134)
...+++. |+.|..+ -.++.+.++|..+.+.+. ++..-.. ....+++||+. ++.+..++.|.++|..+.+.
T Consensus 68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~---~i~~g~~--~g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK---NFTHQMK--DGWGLATDGKI--LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE---EEECCSS--SCCEEEECSSS--EEEECSSSEEEEECTTTCCE
T ss_pred eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE---EEECCCC--CeEEEEECCCE--EEEECCCCeEEEEECCCCcE
Confidence 2234443 5555554 458899999999887665 3321111 12446778885 33444688999999999988
Q ss_pred eEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-------------CCcEEEEEECC
Q 001168 490 QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSA 551 (1134)
Q Consensus 490 ~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~ 551 (1134)
+..+.-.. ...+.+.+. +|...+....++.|.+.|..+++....+... ......++|+|
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 88765321 235677775 3455555556899999999998887766542 13568999999
Q ss_pred CCCEEEEEeeCCCCCCcEEEEeCCC
Q 001168 552 DGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
+++.+++.+. ....+...++..
T Consensus 216 ~~~~lfVTgk---~~~~v~~i~l~~ 237 (266)
T 2iwa_A 216 ENKRIFVTGK---LWPKLFEIKLHL 237 (266)
T ss_dssp TTTEEEEEET---TCSEEEEEEEEE
T ss_pred CCCEEEEECC---CCCeEEEEEEec
Confidence 9998887763 355677777654
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.67 E-value=3e-05 Score=82.01 Aligned_cols=241 Identities=8% Similarity=-0.025 Sum_probs=147.2
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccc--ceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001168 421 LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..+++..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 34555543 478889987654211 01112222345789999997764 455666678999999876554333333335
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001168 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
....+++++.. +.++++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC-
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC-
Confidence 67889987753 24555666678999999875443333333335678999999877776654311 1457888887533
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001168 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
....+....-.....+++++++..|+.+. ..+.|.++|.........+... .....++.. ++.++++....+.|.
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCCeEE
Confidence 22222211112567899999887776654 6689999999865544444321 233566654 343444444568999
Q ss_pred EEECCCchhhhhhc
Q 001168 658 ILANSDGVRLLRML 671 (1134)
Q Consensus 658 iw~~~~~~~~~~~~ 671 (1134)
.+|..++ +....+
T Consensus 233 ~~d~~~g-~~~~~i 245 (267)
T 1npe_A 233 AMDLAIS-KEMDTF 245 (267)
T ss_dssp EEETTTT-EEEEEE
T ss_pred EEeCCCC-CceEEE
Confidence 9999887 333333
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.67 E-value=4.9e-06 Score=98.06 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=69.8
Q ss_pred cEEEEEec-CCeEEEEEc-cCCCceeEecCCCCc-E----------EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001168 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-C----------TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 512 ~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~-v----------~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
..++.++. ++.|..+|. .+++.+......... + ..+++ ++..++.++ .++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQ----ANGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEe----CCCEEEEEECCCCC
Confidence 46666666 788888998 888887766543210 0 11222 345666654 37789999999999
Q ss_pred eEEEecCccC---cceE-EEEEeCCCCEEEEEeC------CCeEEEEECCCCeeEEEEeCC
Q 001168 579 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
.+-++..... ..+. ..... +..+++++. ++.|+.+|..+++.+-.+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 8877654321 0111 11111 345666554 799999999999998877643
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=3.9e-06 Score=85.13 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=130.3
Q ss_pred CceEEEEeccCCCEEEEEe-CC--eEEEEEcCCCeEEEEecCCCCc-eEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE
Q 001168 841 ESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~ 916 (1134)
.....+.|+ ++.+..+.+ +| .|+++|+++++.+..+...... --.+++. ++++.+..-.++.+.+||..+.+.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 345778998 676666555 55 8999999999999888643322 1335554 345555555689999999999999
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCe
Q 001168 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1134)
+.++..-. ....+++|++.|+.+..++.|.++|.++.+......+.. +|
T Consensus 120 ~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~------------------~g---------- 168 (262)
T 3nol_A 120 VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA------------------HG---------- 168 (262)
T ss_dssp EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE------------------TT----------
T ss_pred EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc------------------CC----------
Confidence 99987432 223344677777776667889999999876432111100 00
Q ss_pred EEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccc--ccCCCCccEE
Q 001168 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY--AVSNTAHPLV 1074 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 1074 (1134)
.. -..+..+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .......+-+
T Consensus 169 --------~~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNG 229 (262)
T 3nol_A 169 --------EE----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNG 229 (262)
T ss_dssp --------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEE
T ss_pred --------cc----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEE
Confidence 00 1234456665 7776665556889999999999999998865433321 1122244568
Q ss_pred EeecCCCCCEEEEEeCCCcEE
Q 001168 1075 IAPHPSEPNQIALGMSDGAVH 1095 (1134)
Q Consensus 1075 ~~~~~~d~~~l~s~~~Dg~v~ 1095 (1134)
++|+|...+++++|-.--.++
T Consensus 230 IA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 230 IAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EEEETTTTEEEEEETTCSEEE
T ss_pred EEEcCCCCEEEEECCCCCceE
Confidence 999996656666665444443
No 255
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.59 E-value=0.0058 Score=77.50 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=105.8
Q ss_pred CeEEEEEcCCCeEEEEecCC-CCceEEEE---EcCCCCcEEEEEe----------CCCcEEEEEcCCceEEEEe-cCccc
Q 001168 861 GKVSLFNMMTFKVMTMFMSP-PPAATFLA---FHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKL-KGHQN 925 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~-~~~i~~l~---~s~~~~~~lasg~----------~dg~i~iwd~~~~~~~~~l-~~h~~ 925 (1134)
+.|++.|-.+++.+..+.-. ...+.+++ |..+...++++|+ ..|.|.+|++..++..... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 45888888888877665432 33455544 4432357898887 3488999999755432221 22467
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEE-CCeEEE--EeC
Q 001168 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISV--YDS 1002 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~v~v--wd~ 1002 (1134)
+|++|+-- +|++|+.. ..+|++|++...+.+.... . .. ..+..+.....|.++++|. -..|.+ |+.
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~-~~------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-N-HY------NNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-E-EC------CCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-e-cc------ccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 78888744 56655554 4679999998755333111 0 01 1123333334567777764 334444 554
Q ss_pred CCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001168 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1003 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
....+..+. .+.+...++++.|-.++ .++.+..+|.|.+...+.
T Consensus 956 ~~~~L~~~a-~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEEIA-RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEEEEEE-ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeEEEEE-eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 444443332 24447789999997665 566788999999997764
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=8.2e-05 Score=87.63 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=119.1
Q ss_pred EEEEcCCCcEEEEECCCCeeeEEecCCCCCe---------EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001168 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 470 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445543449999999999987775432210 11222 1257888899999999999999988765543
Q ss_pred CC----cEE-EEEECC---CCC-EEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCccC---------------------
Q 001168 541 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 588 (1134)
Q Consensus 541 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1134)
.. .+. +..+.. +|+ .+++++... ..++.|+.+|..+|+.+-.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 454443211 1267899999999998776543210
Q ss_pred -------------------cceEEEEEeCCCCEEEEEeC--------------------C----CeEEEEECCCCeeEEE
Q 001168 589 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 589 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1134)
..-...+++|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123567777778877653 2 6899999999999988
Q ss_pred EeCCCCC----CCcce-EEEc---cCCC---EEEEEeCCCcEEEEECCCch
Q 001168 626 VDADGGL----PASPR-LRFN---KEGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 626 ~~~~~~~----~~v~~-~~~s---~d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+|+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 8643221 01111 2222 4674 78889999999999999993
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=2.6e-05 Score=91.93 Aligned_cols=191 Identities=10% Similarity=0.029 Sum_probs=120.8
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeeeEEecCCCC-C---------e-EEEEeeccCCccEEEEEecCCeEEEEEccCCCcee
Q 001168 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-P---------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1134)
Q Consensus 469 ~l~sg~~-d~~i~iwd~-~~~~~~~~~~~h~~-~---------v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 535 (1134)
.++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666666 889999999 89998877653221 0 0 11222 12678888899999999999998887
Q ss_pred EecCCCC----cEEE-EEECCCCCEEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCccCc-------------------
Q 001168 536 DYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 589 (1134)
Q Consensus 536 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 589 (1134)
....... .+.+ ... .+..+++++... ..++.|+.+|..+|+.+-++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 133455544211 11678999999999988776543210
Q ss_pred ------------------ceEEEEEeCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCCC--
Q 001168 590 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGLP-- 633 (1134)
Q Consensus 590 ------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~-- 633 (1134)
....+++.++...++.+..+ +.|..+|..+++.+-.++...+..
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00235677777777776532 369999999999988876432110
Q ss_pred --Ccce---EEEccCCC---EEEEEeCCCcEEEEECCCch
Q 001168 634 --ASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 634 --~v~~---~~~s~d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
.+.. +....+|+ .++.++.+|.+.++|..+++
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 1111 22224674 57788889999999999983
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.57 E-value=4.7e-06 Score=84.56 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=128.0
Q ss_pred eeEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeeeEEecCCCCCeE--EEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001168 456 VNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~v~--~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
...+.|+ ++. +..+.+.+| .|+++|+++|+.+..+.-.. ... .+++ .++ ...+..-.++.+.+||..+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCC-EEEEEEeeCCEEEEEECccC
Confidence 4788998 554 566666655 99999999999988876432 333 3444 332 45555556899999999999
Q ss_pred CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC----cceEEEEEeCCCCEEEEEe
Q 001168 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 607 (1134)
+.+..+..... ...+++|++.|+.+. +.+.|.++|..+.+.+.++..... ..++.+.|. +|..++..-
T Consensus 118 ~~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 118 RQVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CEEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 98887765432 223446777777653 367799999999998888765321 134557776 665444444
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCC----------CCCcceEEEccCCCEEEEEeC
Q 001168 608 DEFQIKFWDMDNMNMLTTVDADGG----------LPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
.+..|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999999999999976421 123478999998887777665
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=6.9e-06 Score=100.80 Aligned_cols=248 Identities=12% Similarity=0.051 Sum_probs=135.8
Q ss_pred CeeEEEEe-cCCCeEEEEEeCCC----cEEEEEccCc-cccccccceeeccccccccccccccccCCcCeEEEEECCCCC
Q 001168 348 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1134)
Q Consensus 348 ~V~~v~~s-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~ 421 (1134)
.+...+|| |||++++++.+.+| +|+++|+.++ +.+.. . + ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 57889999 99996665555444 4999999998 63311 0 1 11245789999999
Q ss_pred EEEEEeCC-----CeEEEEEcCCCCcccceeEee-cccCCeeEEEEecCCCcEEEEEEc-CCCcEEEEECCCCe-ee--E
Q 001168 422 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 491 (1134)
Q Consensus 422 ~las~~~d-----g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~sg~-~d~~i~iwd~~~~~-~~--~ 491 (1134)
.|+....+ ..|.++++.++..... ..+. ........+.|+|||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887665 3688888877643211 1222 223346788999999953333322 34578889988762 22 3
Q ss_pred Ee-cCCCCCeEEEEeeccCCccEEEEEecC----CeEEEEEccCCCceeE-ecCCCC--cEEEEEECCCCCEEEEEeeCC
Q 001168 492 TF-EGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 492 ~~-~~h~~~v~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
.+ .+......++.|+. ++.+++....+ ..|..+|+.+...... +..+.. .+..+.+. ++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE-e
Confidence 33 33445556655432 22344444443 3566667664222122 222322 44555554 556655442 2
Q ss_pred CCCCcEEEEeC-------CCCeeEEEecCccCcceEEEEE----eCCCC-EEEEEeC---CCeEEEEECCCCee
Q 001168 564 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRN-RFLAAGD---EFQIKFWDMDNMNM 622 (1134)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~---dg~i~iwd~~~~~~ 622 (1134)
++...|.++++ .+++....+.......+..+.+ ++++. .+++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 33456778886 3443133333222112222322 34554 3444332 25678888877664
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.55 E-value=2.1e-05 Score=92.33 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=123.4
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeeeEEecCCCCC-----------eEEEEeeccCC--ccEEEEEecCCeEEEEEccCCCc
Q 001168 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEAP-----------VYSVCPHHKES--IQFIFSTAIDGKIKAWLYDYLGS 533 (1134)
Q Consensus 469 ~l~sg~~-d~~i~iwd~-~~~~~~~~~~~h~~~-----------v~~i~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~ 533 (1134)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.|.++ ..+++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666776 889999999 899988776532211 11233322211 12388888999999999999988
Q ss_pred eeEecCCCC----cEEE-EEECCCCCEEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCccCc-----------------
Q 001168 534 RVDYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR----------------- 589 (1134)
Q Consensus 534 ~~~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~----------------- 589 (1134)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-++......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876544321 1111 111 134 444443211 12678999999999988776543210
Q ss_pred --------------------ceEEEEEeCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCCC
Q 001168 590 --------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 590 --------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
.-...++.++...++.+..+ +.|..+|.++|+.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00135667777888887654 489999999999998887543211
Q ss_pred ----Ccc--e-EEEc-cCC---CEEEEEeCCCcEEEEECCCch
Q 001168 634 ----ASP--R-LRFN-KEG---SLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 634 ----~v~--~-~~~s-~d~---~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
... . +... .+| ..++.++.+|.+.++|..+|+
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 011 1 1222 467 467778899999999999983
No 261
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.55 E-value=0.0059 Score=75.24 Aligned_cols=572 Identities=11% Similarity=0.086 Sum_probs=300.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++.-..+|... .|+.+| +..||-..-+... .. -......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 3579999999999633 355565 5566632211100 00 01123568888877766 4555
Q ss_pred EeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-----CCCCCe
Q 001168 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPV 500 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-----~h~~~v 500 (1134)
|+.+| +..||..+..... ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66665 7899987653211 00112235776654 4553 3444444 6888998776543 231 123457
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-ecC----CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001168 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.++.... +|.+. .++.+ -+..++..+...... ... ....|.++...+++..|..++. +-+..+|..
T Consensus 149 ~~i~~d~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEEcC--CCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 7776543 33444 45544 466777665432211 111 1224888888777765444442 128889987
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-----CCCCcceEEEccCCCEEEEE
Q 001168 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~~~ 650 (1134)
+++... +.......|.++....+|...+. +. +-+.+++..+++......... ....|.++....+|.+-+ |
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-G 295 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-G 295 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-E
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-E
Confidence 765432 22112226888888877766554 44 458888887665432221110 123477777777776444 5
Q ss_pred eCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCccCCCCC
Q 001168 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1134)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1134)
+..| +.++..... ...+...
T Consensus 296 T~~G-l~~~~~~~~---~~~~~~~-------------------------------------------------------- 315 (758)
T 3ott_A 296 TDYG-ISLSRYNSA---LQFIPIS-------------------------------------------------------- 315 (758)
T ss_dssp ESSS-EEEECCCC----CEEEEHH--------------------------------------------------------
T ss_pred eCCc-ccccccCCc---eeEEecc--------------------------------------------------------
Confidence 5555 444322110 0000000
Q ss_pred ccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccccCCCCC
Q 001168 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 810 (1134)
Q Consensus 731 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~ 810 (1134)
.. ........|.++....+|...+. +.+| +..++.......
T Consensus 316 --------------------~~--------------~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--- 356 (758)
T 3ott_A 316 --------------------QI--------------TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--- 356 (758)
T ss_dssp --------------------HH--------------SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---
T ss_pred --------------------cC--------------CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---
Confidence 00 00001234677777777775444 4455 334432211000
Q ss_pred CcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEe--cC----CCCce
Q 001168 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF--MS----PPPAA 884 (1134)
Q Consensus 811 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i 884 (1134)
....+...... ..+ . ...|.++.-..+|.+-+.. ++.+..||..+++..... .. ....|
T Consensus 357 ------~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v 421 (758)
T 3ott_A 357 ------DAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWT 421 (758)
T ss_dssp ------CCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSE
T ss_pred ------eeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceE
Confidence 00000000000 001 1 4568999988888866543 668999999887654322 11 12458
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcCC------ceEE--EEec---C-cccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001168 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRV------DEVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~------~~~~--~~l~---~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
.++...+ ++++.+ |+..+-|.++|..+ .... ..+. + ....|.++...++|++.+.++..+-|..+|
T Consensus 422 ~~i~~d~-~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d 499 (758)
T 3ott_A 422 YYIFEDT-AGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKIN 499 (758)
T ss_dssp EEEEECT-TSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEE
T ss_pred EEEEEcC-CCCEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEe
Confidence 8888877 666554 77766788888653 1111 1111 1 123588999988998877444445588899
Q ss_pred CCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEE
Q 001168 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLV 1032 (1134)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 1032 (1134)
..+++... .. ..+. .....+.++....+|.+.+.+ .+.+..|+........+....--...|.++... +|. |
T Consensus 500 ~~~~~~~~---~~-~~~~-~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-l 571 (758)
T 3ott_A 500 PRTREVTK---LF-ADEL-TGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-I 571 (758)
T ss_dssp TTTTEEEE---EC-TTTS-CGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-E
T ss_pred CCCCceEE---ec-CCCc-CCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEEecccCCCccceEEEEEC-CCC-E
Confidence 87765321 11 1110 001356788888889887765 456889998444443332111113568888763 564 5
Q ss_pred EEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001168 1033 YAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1033 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
..++.+| |..+|..+.+... .. .+. .... ...+...+| .|..|+.+|-+ .++..
T Consensus 572 Wi~t~~G-l~~~~~~~~~~~~-~~----~~~----~~~~--~~~~~~~~G-~l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 572 WVSTTNG-LWIIDRKTMDARQ-QN----MTN----KRFT--SLLFDPKED-CVYLGGADGFG-ISHSN 625 (758)
T ss_dssp EEEESSC-EEEEETTTCCEEE-C------CC----CCCS--EEEEETTTT-EEEEECBSEEE-EEEC-
T ss_pred EEECCCC-eEEEcCCCceeEE-ec----CCC----Ccee--eeEEECCCC-cEEEecCCceE-EEChh
Confidence 5555555 8888988765432 11 111 1111 233333354 56667788854 45554
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.54 E-value=1.4e-05 Score=87.41 Aligned_cols=238 Identities=13% Similarity=0.035 Sum_probs=147.0
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEec-C------------------CCCceEEEEEcCCCCcEEEEEe
Q 001168 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM-S------------------PPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~-~------------------~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
...+++++++|+++.++. ++.|..||..+++...... . ....+..+++.+++++ |.++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 356788999998666666 8999999987655432111 0 0135788999973454 44455
Q ss_pred CCCcEEEEEcCCceEEEEec----C-cccceEEEEEec-CCCEEEEEcC-----------------CCcEEEEeCCCccc
Q 001168 902 EDSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWEK 958 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~~~~l~----~-h~~~i~~l~~s~-d~~~l~s~~~-----------------D~~i~iWd~~~~~~ 958 (1134)
..+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555688898776642 2221 1 112467899999 9988776543 36688888876653
Q ss_pred ccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE--ECCeEEEEeCCCcc---ccccCCCCCCCCCeEEEEEccCCCEEE
Q 001168 959 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLEC---SRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~~~~---~~~~~~~~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
.. ..... .....++|+|||++|.++ ..+.|.+|++.+.. ...+... .+ ...++++++|++.+
T Consensus 178 ~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEE
T ss_pred EE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEE
Confidence 21 11111 234689999999977664 45789999985422 1122111 23 78899999998766
Q ss_pred EEec----------CCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1034 AGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1034 ~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
+... .+.|..+|.. |+.+..+.... +. ....+.++++. +++++++....+.|..+++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~--~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PF--AGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TT--TTSCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECCC----CC--ccccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6544 4678888874 77766654321 10 01233455552 56777777778889999876433
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.54 E-value=4.7e-06 Score=84.45 Aligned_cols=200 Identities=12% Similarity=0.035 Sum_probs=130.8
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCce--EEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE
Q 001168 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~ 916 (1134)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ - .... -.+++. ++++.+..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 33456788873 44444445 789999999999988777 2 2233 345664 345555566789999999999999
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCe
Q 001168 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1134)
+.++..- ..-..++ +|++.|+.+..++.|.++|.++.+.+....+.. +
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~----------- 176 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------R----------- 176 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------T-----------
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------C-----------
Confidence 9998743 2223444 578877777778899999999876432211100 0
Q ss_pred EEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccc---ccCCCCccE
Q 001168 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY---AVSNTAHPL 1073 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1073 (1134)
+.. -..++.+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .......+-
T Consensus 177 -------g~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 177 -------GQP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp -------TEE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred -------Ccc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 000 1234566665 7765655556889999999999999998865332211 112224556
Q ss_pred EEeecCCCCCEEEEEeCCCcE
Q 001168 1074 VIAPHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1074 ~~~~~~~d~~~l~s~~~Dg~v 1094 (1134)
+++|+|...++++||-.--.+
T Consensus 239 GIA~dp~~~rlfVTGK~Wp~~ 259 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGKLWPRL 259 (268)
T ss_dssp EEEECTTTCCEEEEETTCSEE
T ss_pred EEEEcCCCCEEEEeCCCCCce
Confidence 899999777788877544433
No 264
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.52 E-value=1.6e-05 Score=95.88 Aligned_cols=268 Identities=9% Similarity=0.046 Sum_probs=164.0
Q ss_pred EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeC------CCeEEE
Q 001168 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS------KHIVHL 434 (1134)
Q Consensus 361 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~------dg~i~i 434 (1134)
.+++++.|+.|..+|..+|+.+.+ ......... ......++. -++ .++++.. +|.|..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~-------~~~~~~~~~---~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWS-------QQTTDPAKP---YSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE-------EECSCTTSS---CBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeee-------eccCCCCCc---ceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEE
Confidence 355678899999999999987643 211000000 000111111 134 4444432 589999
Q ss_pred EEcCCCCcccceeEeec----------------------------ccCCeeEEEEecCCCcEEEEEEcCCC---------
Q 001168 435 YTYNPTGELRQHLEIDA----------------------------HVGGVNDIAFAHPNKQLCIVTCGDDK--------- 477 (1134)
Q Consensus 435 wd~~~~~~~~~~~~~~~----------------------------h~~~v~~l~~s~d~~~~~l~sg~~d~--------- 477 (1134)
+|..+|+.+-......+ +......+++.+++. +++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~--~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD--LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHS
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC--EEEEeCCCCCccccCCCC
Confidence 99999987653221100 111123578888887 666676655
Q ss_pred ----------cEEEEECCCCeeeEEecC--CC-------CCeEEEEeeccCCcc---EEEEEecCCeEEEEEccCCCcee
Q 001168 478 ----------MIKVWDVVAGRKQYTFEG--HE-------APVYSVCPHHKESIQ---FIFSTAIDGKIKAWLYDYLGSRV 535 (1134)
Q Consensus 478 ----------~i~iwd~~~~~~~~~~~~--h~-------~~v~~i~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~ 535 (1134)
.|..+|..+|+.+..++. |. .+.....+.. +|. .++.++.+|.+.++|..+++.+.
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 499999999999887764 32 2222222212 333 68899999999999999888764
Q ss_pred EecCCC------------CcE------------------------EEEEECCCCCEEEEEee------------------
Q 001168 536 DYDAPG------------NWC------------------------TMMAYSADGTRLFSCGT------------------ 561 (1134)
Q Consensus 536 ~~~~~~------------~~v------------------------~~~~~s~~~~~l~~~~~------------------ 561 (1134)
...... .++ ..++++|+...++....
T Consensus 339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~ 418 (668)
T 1kv9_A 339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA 418 (668)
T ss_dssp EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence 322111 001 12677887777665321
Q ss_pred --------------CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001168 562 --------------SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 562 --------------~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
....++.|..||+.+|+.+-+..... ......+...+..+++++.|+.++.||.++++.+..+.
T Consensus 419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 00123779999999999887776543 23333445567889999999999999999999999887
Q ss_pred CCCCCCCcceEEEccCCCE-EEEEe
Q 001168 628 ADGGLPASPRLRFNKEGSL-LAVTT 651 (1134)
Q Consensus 628 ~~~~~~~v~~~~~s~d~~~-l~~~~ 651 (1134)
..... ...-+.+..+|+. ++.++
T Consensus 497 ~~~~~-~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 497 AQSGI-VAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CSSCC-CSCCEEEEETTEEEEEEEE
T ss_pred CCCCc-ccCceEEEECCEEEEEEEe
Confidence 65432 2234555567763 44433
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=2.3e-05 Score=85.51 Aligned_cols=249 Identities=9% Similarity=0.034 Sum_probs=147.3
Q ss_pred ceEEEEEecCCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCC---------CCccccccCCCCCCCCceE
Q 001168 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS---------GTLMTNDINESKPTEESAA 844 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~---------~~~~~~~~~~~~h~~~~i~ 844 (1134)
...++++.++|+.+++...++.|..|+...... ..|.... +........ . ...+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~p~ 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRP---L-CGRTY 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHH---H-HCCEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccc---c-CCCCc
Confidence 346788999998788888888888886532111 0000000 000000000 0 23468
Q ss_pred EEEecc-CCCEEEEEeCCeEEEEEcCCCeEEEEecC-----CCCceEEEEEcCCCCcEEEEEeC----------------
Q 001168 845 CIALSK-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME---------------- 902 (1134)
Q Consensus 845 ~~~~s~-dg~~la~~sdg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~lasg~~---------------- 902 (1134)
.+++++ +|+++++...+.|..+|..+++. ..+.. .......+++.+.+|++.++-..
T Consensus 84 gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred eEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 899998 66555443456688888876542 22211 12346789998833555554322
Q ss_pred -CCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEE-EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEE
Q 001168 903 -DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 903 -dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
++.|..||..+++...... .......|+++||+++|. +-...+.|..+++.+...-......... . ...+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi 234 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNI 234 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEE
T ss_pred CCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCe
Confidence 3678999987776433222 122346799999998554 4456788999998863211111111111 2 5789
Q ss_pred EEcCCCcEEEEE-E----------CCeEEEEeCCCccccccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001168 981 QFHNDQTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 981 ~fspdg~~l~~~-~----------d~~v~vwd~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
++.++|+++++. . .+.|..+|.+++.+..+....+. ...++++++ .++++.++...++.|.++++..
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999999977774 3 36788888877766665443321 245667776 5666666666788899998764
No 266
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.49 E-value=0.0079 Score=74.09 Aligned_cols=527 Identities=11% Similarity=0.062 Sum_probs=275.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|.++....+|. |. .|+.+| +..||..+...... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~-lW-igT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LY-MGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-EE-EEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-EE-EEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35689988888885 43 455554 78899876532210 0111234777654 345 4555
Q ss_pred EeCCCeEEEEEcCCCCcccceeEee-----cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-ecCC---
Q 001168 426 AFSKHIVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH--- 496 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h--- 496 (1134)
++.+ -+..+|..+++.. .+. -....|.++....+|. +.+ |+.+ -|..+|..+++.... ....
T Consensus 118 gt~~-Gl~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~ 188 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLT----SFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQ 188 (758)
T ss_dssp EETT-EEEEEETTTCCEE----EECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTC
T ss_pred EcCC-cceeEeCCCCeEE----EeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCcccc
Confidence 6666 5888898765321 121 1134588888877776 333 4444 578889777654321 1111
Q ss_pred -CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001168 497 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 497 -~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
...|.++.... ++..|..|+. +-+..+|..+.............|.++....+|...+.. . . -+.+++..
T Consensus 189 ~~~~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~ 259 (758)
T 3ott_A 189 SNLFVNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHND 259 (758)
T ss_dssp SSCCEEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCT
T ss_pred ccceeEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecC
Confidence 22477776543 3354555553 467778876543322111123468888888888776654 1 2 28888887
Q ss_pred CCeeEEEec------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-----CCCCCCCcceEEEccCC
Q 001168 576 EGAIKRTYS------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----ADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 576 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~d~ 644 (1134)
+++...... .-....|.++....+|...+ |...| +.++.... ....+. .......|.++.-..+|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCC
Confidence 665432211 11223588888888776555 44556 54443321 122221 01112357777777777
Q ss_pred CEEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCc
Q 001168 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1134)
.+-+ |+.+| +..++..++... .+
T Consensus 336 ~lWi-Gt~~G-l~~~~~~~~~~~--~~----------------------------------------------------- 358 (758)
T 3ott_A 336 FYWF-GGANG-LIRFTDPAGERH--DA----------------------------------------------------- 358 (758)
T ss_dssp CEEE-EETTE-EEEESCTTSSCC--CC-----------------------------------------------------
T ss_pred CEEE-eeCCc-ceeecccccccc--ee-----------------------------------------------------
Confidence 7554 45554 555554432000 00
Q ss_pred cCCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeeccceEEEeecccc
Q 001168 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~ 804 (1134)
..+..... . .......|.++....+|+..+ ++ ++-+..|+..+.
T Consensus 359 -----------------------~~~~~~~~--~---------~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 359 -----------------------IWYRMGDK--T---------YPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR 402 (758)
T ss_dssp -----------------------EEECTTCS--S---------SCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred -----------------------EEeccCCc--C---------CCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence 00000000 0 000124577777777777444 44 345666764322
Q ss_pred cCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEEcCCC-----eEE---EE
Q 001168 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TM 876 (1134)
Q Consensus 805 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~-----~~~---~~ 876 (1134)
+.. .+.... ...... ...|.++...++|.+.+....+.+.++|..+. ... ..
T Consensus 403 ~~~------------~~~~~~-------~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~ 462 (758)
T 3ott_A 403 QFI------------HYNIVD-------NTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQN 462 (758)
T ss_dssp EEE------------EEEEEC-------CC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEE
T ss_pred cEE------------EeecCC-------CcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccc
Confidence 110 000000 000001 45688888888887666444667888886531 111 11
Q ss_pred ec---C-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC---cccceEEEEEecCCCEEEEEcCCCcEE
Q 001168 877 FM---S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 877 ~~---~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
+. + ....|.++...+ ++++.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +.
T Consensus 463 ~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~ 539 (758)
T 3ott_A 463 YSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VM 539 (758)
T ss_dssp ECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EE
T ss_pred cccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eE
Confidence 11 1 223589999988 777765334445588889887765432211 13467888888888877654 444 88
Q ss_pred EEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCCccccccCCCCCCCCCeEEEEEc-cC
Q 001168 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CD 1028 (1134)
Q Consensus 950 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s-~d 1028 (1134)
.++..+++... .. ..+-. ...+.++... +|++.+++ ++.+..+|........+... ...+....+. +|
T Consensus 540 ~~~~~~~~~~~---~~-~~gl~--~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 608 (758)
T 3ott_A 540 RINPKDESQQS---IS-FGSFS--NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKE 608 (758)
T ss_dssp EECC--CCCCB---CC-CCC-----CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C---CCCCSEEEEETTT
T ss_pred EEecCCCceEE---ec-ccCCC--ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC---CCceeeeEEECCC
Confidence 88877655321 11 11111 1346777664 66655544 56688888854444433222 2233344443 46
Q ss_pred CCEEEEEecCCcEEEEeCC
Q 001168 1029 GLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1029 g~~l~~~~~dg~I~vwd~~ 1047 (1134)
|. |+.|+.+|. ..++..
T Consensus 609 G~-l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 609 DC-VYLGGADGF-GISHSN 625 (758)
T ss_dssp TE-EEEECBSEE-EEEEC-
T ss_pred Cc-EEEecCCce-EEEChh
Confidence 65 666777774 455543
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.48 E-value=3.1e-05 Score=90.98 Aligned_cols=275 Identities=9% Similarity=0.061 Sum_probs=162.4
Q ss_pred EEEEecCCCe---EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 351 SMDFHPQQQT---ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 351 ~v~~spdg~~---llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.++++|.+.. .++.++.|+.|.-+|..+|+.+.+ ......... ..-...++ + -++ .+++++
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~-------~~~~~~~~~---~~~~ssP~----v-~~g-~V~vg~ 173 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK-------VENSDIKVG---STLTIAPY----V-VKD-KVIIGS 173 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE-------EECCCGGGT---CBCCSCCE----E-ETT-EEEECC
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEe-------ecCCCCCcc---ceeecCCE----E-ECC-EEEEEe
Confidence 3566654432 145678899999999999987643 211100000 00011111 1 144 444444
Q ss_pred ------CCCeEEEEEcCCCCcccceeEeecc----------------------------------cCCe-eEEEEecCCC
Q 001168 428 ------SKHIVHLYTYNPTGELRQHLEIDAH----------------------------------VGGV-NDIAFAHPNK 466 (1134)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~~h----------------------------------~~~v-~~l~~s~d~~ 466 (1134)
.++.|+-+|..+|+.+-........ ...+ ..+++.++..
T Consensus 174 ~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g 253 (599)
T 1w6s_A 174 SGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN 253 (599)
T ss_dssp BCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT
T ss_pred cccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC
Confidence 3799999999998865422111000 0001 1456667776
Q ss_pred cEEEEEEcCC----------------CcEEEEECCCCeeeEEecCCCC----------CeEEEEeeccCCc---cEEEEE
Q 001168 467 QLCIVTCGDD----------------KMIKVWDVVAGRKQYTFEGHEA----------PVYSVCPHHKESI---QFIFST 517 (1134)
Q Consensus 467 ~~~l~sg~~d----------------~~i~iwd~~~~~~~~~~~~h~~----------~v~~i~~~~~~~~---~~l~s~ 517 (1134)
+++.+..+ +.|..+|..+|+.+..++.... ++. +.. ...+| ..++.+
T Consensus 254 --~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~-~~~~G~~~~~v~~~ 329 (599)
T 1w6s_A 254 --LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQ-KDKDGKARKLLTHP 329 (599)
T ss_dssp --EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE-ECTTSCEEEEEEEE
T ss_pred --EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eec-cccCCcEEEEEEEE
Confidence 45555443 4899999999999877664221 121 111 11345 467778
Q ss_pred ecCCeEEEEEccCCCceeEecCCC-------------CcE--------------------------EEEEECCCCCEEEE
Q 001168 518 AIDGKIKAWLYDYLGSRVDYDAPG-------------NWC--------------------------TMMAYSADGTRLFS 558 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~s~~~~~l~~ 558 (1134)
+.+|.+.++|..+++.+....... .++ ..++++|+..++++
T Consensus 330 ~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv 409 (599)
T 1w6s_A 330 DRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFM 409 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEE
T ss_pred CCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEE
Confidence 999999999999988776543211 111 24567777776655
Q ss_pred EeeC------------------------------CC-----CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEE
Q 001168 559 CGTS------------------------------KE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1134)
Q Consensus 559 ~~~~------------------------------~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1134)
...+ .. ..+.|..||+.+|+.+-+..... +...-.+...+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~v 487 (599)
T 1w6s_A 410 GINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLV 487 (599)
T ss_dssp EEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEE
T ss_pred eccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEE
Confidence 3210 00 34789999999999887765321 11111123356788
Q ss_pred EEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001168 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
+.++.|+.++.||.++|+.+..++..... ...-+.+..+|+..+
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQYV 531 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCCEEEE
Confidence 88999999999999999999988765432 223456666776433
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.46 E-value=3e-05 Score=77.99 Aligned_cols=206 Identities=13% Similarity=0.081 Sum_probs=132.9
Q ss_pred CCceEEEEeccCCCEEEEEe-C--CeEEEEEcCCCeEEEEecCCCCc-eEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001168 840 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
......+.|+. +.+..+.+ + ..|+++|+.+++.+....-.... --.+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44566889986 45555544 3 48999999999999887643322 2344554 44555556678999999999999
Q ss_pred EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECC
Q 001168 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1134)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1134)
.+.++..-. .-.+++ +|++.|+.+..++.|.++|.++.+.+....+.. +
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~------------------~---------- 145 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA------------------G---------- 145 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE------------------T----------
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc------------------C----------
Confidence 999987433 224444 577766666678889999999876432211100 0
Q ss_pred eEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccc---cCCCCcc
Q 001168 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA---VSNTAHP 1072 (1134)
Q Consensus 996 ~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 1072 (1134)
+.. -..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+... ......+
T Consensus 146 --------g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 146 --------GRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp --------TEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred --------Ccc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 000 1234555554 67766655567899999999999999988664433321 1122355
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEe
Q 001168 1073 LVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
-+++++|...++++||-.=-.++--.
T Consensus 207 NGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 68999996666777775555444333
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=0.00012 Score=78.98 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=138.7
Q ss_pred cCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEc-CCC-cEEEEECCC
Q 001168 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 486 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~-~i~iwd~~~ 486 (1134)
.....++|+++|+++++...++.|..||..+. ... .+ ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45678999999997777778899999998753 221 11 2234688999999998 444443 333 577778778
Q ss_pred CeeeEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-e-------c--CCCCcEEEEEECCCCCE
Q 001168 487 GRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 555 (1134)
Q Consensus 487 ~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 555 (1134)
++....... .......++..+ ++..+++...++.|.++|......... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 775432221 122234444322 224455544688888888764321111 0 0 111234455 788888
Q ss_pred EEEEeeCCCCCCcEEEEeCCC-Cee--EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001168 556 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1134)
|+.+.. ..+.|..+++.. ++. ...+... . ....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999864 331 1111111 1 34558899999887776677899999975 5553322222223
Q ss_pred CCcceEEEc---cCCCEEEEEeCC
Q 001168 633 PASPRLRFN---KEGSLLAVTTSD 653 (1134)
Q Consensus 633 ~~v~~~~~s---~d~~~l~~~~~d 653 (1134)
....+++|. ++++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 457899998 888877776654
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=2.1e-05 Score=95.17 Aligned_cols=279 Identities=8% Similarity=0.002 Sum_probs=156.5
Q ss_pred eEEEEec-CCCeEEEEEeCCC-----------cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 350 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 350 ~~v~~sp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
.++++.| +|+ +++.|+.++ .+.+||..+++...... ....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence 3677888 776 777776432 58889988775432100 011233445567889
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCCcccceeEeecccCC-eeEEEEecCCCcEEEEEEc-CC-----CcEEEEECCCCee
Q 001168 418 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRK 489 (1134)
Q Consensus 418 pdg~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~d~~~~~l~sg~-~d-----~~i~iwd~~~~~~ 489 (1134)
.+|+.+++|+. +..+.+||..+++-.. ...+ +..+ -.+++..++++ +++.|+ .+ ..+.+||..+++.
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc
Confidence 99999999984 5689999988753221 1111 1122 23455667888 777777 44 5799999988765
Q ss_pred eEEe----cCCCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEccCCCceeEecCC---------CCcEEEE
Q 001168 490 QYTF----EGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAP---------GNWCTMM 547 (1134)
Q Consensus 490 ~~~~----~~h~~~v~~i~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~---------~~~v~~~ 547 (1134)
...- ......-....+ ..++..++.++.+ ..+..||..+.......... ...-.++
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eeCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 4320 000000000011 1122444555444 45678888766533222111 1122344
Q ss_pred EECC-CCCEEEEEeeCCCC----CC---cEEEEeCCCCeeEEEe--cCccCcceEEEEEeCCCCEEEEEeCC--------
Q 001168 548 AYSA-DGTRLFSCGTSKEG----ES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE-------- 609 (1134)
Q Consensus 548 ~~s~-~~~~l~~~~~~~~~----~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 609 (1134)
.|.. +++.++.++.+... .. .+.+||..+....... .......-.+....|+++.++.||.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4433 66677777642110 11 5788898877655443 22222123445677899999998754
Q ss_pred ---CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001168 610 ---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 610 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
..+.+||..+.+....-..........+..+.+||++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999987664432211111112234556789999999885
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.43 E-value=2.5e-05 Score=79.08 Aligned_cols=182 Identities=8% Similarity=0.057 Sum_probs=126.6
Q ss_pred cCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001168 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
.....+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++.+ .+..-.++.+.++|..+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~L-y~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGERL-YQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSCE-EEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCEE-EEEEccCCEEEEEECCcCc
Confidence 345678887 4667777788899999999999887744 332 33333334456653 4445678999999999999
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-----CcEEEEEECCCCCEEEEEeeCC
Q 001168 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-----NWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
.+.++... ..-+.++. + +..|+.+..++.|.++|..+.+....+.... ..++.+.|. +|+.. +...
T Consensus 128 ~~~ti~~~-~eGwGLt~--D--g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly-anvw-- 198 (268)
T 3nok_A 128 RERTTRYS-GEGWGLCY--W--NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY-ANIW-- 198 (268)
T ss_dssp EEEEEECS-SCCCCEEE--E--TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEET--
T ss_pred EEEEEeCC-CceeEEec--C--CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE-EEEC--
Confidence 99988743 22245543 3 3677777779999999999888776654422 144667776 67544 4332
Q ss_pred CCCCcEEEEeCCCCeeEEEecCc------------cCcceEEEEEeCCCCEEEEEe
Q 001168 564 EGESHLVEWNESEGAIKRTYSGF------------RKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
....|.+.|.++|+.+..+... .....+.++++|+++.|+..+
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 3567999999999998887643 122678999999887766655
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=0.00011 Score=79.35 Aligned_cols=241 Identities=9% Similarity=0.005 Sum_probs=144.1
Q ss_pred ccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001168 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 333 ~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
+..+.+.+..+........++|+|+|+ ++++-..++.|..||..+.... .+ .......
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~------~~---------------~~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI------HA---------------TVEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE------EE---------------ECSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCceEE------EE---------------eCCCCce
Confidence 334566777776557889999999997 7777667889999987753211 11 1123588
Q ss_pred EEEECCCCCEEEEEeCC--CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-
Q 001168 413 RCVWGPDGLMLGVAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 489 (1134)
Q Consensus 413 ~i~~spdg~~las~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~- 489 (1134)
.+++.++|+++++.... ..|..+|..+++.. ....+ ........++..+++. .+++...++.|.++|..+++.
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976665433 24667777766532 11121 1122234555555544 455655688999999776532
Q ss_pred eEEec---------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCCCCEEE
Q 001168 490 QYTFE---------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 490 ~~~~~---------~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
+.... +.-.....+ ++++ +.++++-...+.|..++++.... ...+. .......++++++|++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEE
Confidence 21111 111233445 4443 23455556778999999875211 11111 112345688999998766
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEE--EecCccCcceEEEEEe---CCCCEEEEEeCC
Q 001168 558 SCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDE 609 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 609 (1134)
+.. ..+.|.++|.. ++... .+..... ...+++|. |+++.|+.++..
T Consensus 228 a~~----~~~~V~~~~~~-G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 228 ATH----IYNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECB----TTCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECT
T ss_pred EeC----CCCeEEEECCC-CCEEEEeecccccC-CceEEEEecccCCCCEEEEECCC
Confidence 543 35679999975 65532 2332222 57889998 888777776543
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.42 E-value=6.3e-05 Score=88.65 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=109.1
Q ss_pred CcEEEEECCCCeeeEEecC--CCC----CeEE-EEeecc-CCc---cEEEEEecCCeEEEEEccCCCceeEecCCC----
Q 001168 477 KMIKVWDVVAGRKQYTFEG--HEA----PVYS-VCPHHK-ESI---QFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---- 541 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~--h~~----~v~~-i~~~~~-~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---- 541 (1134)
+.|..+|..+|+.+..++. |.. .+.. +.+... .+| ..++.++.+|.++++|..+++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 6899999999999887753 321 1111 111111 244 378889999999999999888766443321
Q ss_pred ---------CcE--------------------------------EEEEECCCCCEEEEEeeC------------------
Q 001168 542 ---------NWC--------------------------------TMMAYSADGTRLFSCGTS------------------ 562 (1134)
Q Consensus 542 ---------~~v--------------------------------~~~~~s~~~~~l~~~~~~------------------ 562 (1134)
.++ ..++++|+...+++....
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 000 134667766666554310
Q ss_pred -----------CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001168 563 -----------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 563 -----------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
.+..+.|..||+.+|+.+-+..... .+..-.....+..++.++.|+.++.||.++|+.+..+.....
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 1235789999999999887765432 222111223467888899999999999999999999886543
Q ss_pred CCCcceEEEccCCCEEEE
Q 001168 632 LPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~ 649 (1134)
. ...-+.|..+|+..++
T Consensus 529 ~-~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 529 I-VSPPITWEQDGEQYLG 545 (582)
T ss_dssp C-CSCCEEEEETTEEEEE
T ss_pred c-ccCceEEEECCEEEEE
Confidence 2 2234667777764443
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.39 E-value=7.4e-05 Score=75.15 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=126.7
Q ss_pred CeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeEEecCCCCC-eEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001168 455 GVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
-...+.|+. +. +..+.+.+ ..|+.+|+.+|+.+..+.-.... -..+++. + +...+..-.++.+.+||..+.
T Consensus 22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~-~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--R-DRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEESSSSEEEEEETTTT
T ss_pred ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--C-CEEEEEEeeCCEEEEEECCcC
Confidence 466889986 43 55666654 49999999999998877533221 1334443 2 255556667999999999998
Q ss_pred CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC----cceEEEEEeCCCCEEEEEe
Q 001168 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 607 (1134)
+.+..+...... ..+ +++++.|+.+. +++.|.++|..+.+.+.++..... ..++.+.+. +|..++..-
T Consensus 96 ~~~~ti~~~~~G-wgl--t~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGEG-WAL--TSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEEEECSSCC-CEE--EECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCc-eEE--eeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 888877654432 233 35677776652 467899999999998888765422 134556665 565444444
Q ss_pred CCCeEEEEECCCCeeEEEEeCCC-----------CCCCcceEEEccCCCEEEEEeC
Q 001168 608 DEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
.+..|.+.|..+++.+..+...+ .....+.+|++|+++.|++.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 67899999999999999987431 1124578999998877776654
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.29 E-value=0.00056 Score=75.02 Aligned_cols=239 Identities=11% Similarity=0.052 Sum_probs=152.0
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001168 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
...+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+
T Consensus 34 d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp TSSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3345666666 345666666678888887665544444 34458899999845555555556789999998876544434
Q ss_pred cCcccceEEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE--EC-Ce
Q 001168 921 KGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HE-SQ 996 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d-~~ 996 (1134)
........++++.+.+ ++.++-...+.|.+.+++..... .+.. .+ ......+++.|.+..|..+ .. +.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~---~l~~-~~----l~~P~~iavdp~~g~ly~td~~~~~~ 183 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK---VLLW-QS----LEKPRAIALHPMEGTIYWTDWGNTPR 183 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC-TT----CSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE---EEEe-CC----CCCcceEEEecCcCeEEEeccCCCCE
Confidence 3333456789998754 45556566788999998764321 1111 11 1346899999977766664 33 77
Q ss_pred EEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEE
Q 001168 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVI 1075 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1134)
|..+++++.....+.... ......++|+|++..|+.+. ..+.|..++++.......+.. ...+|.++
T Consensus 184 I~r~~~dG~~~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~----------~~~~P~gi 251 (349)
T 3v64_C 184 IEASSMDGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ----------GLPHPFAI 251 (349)
T ss_dssp EEEEETTSCSCEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSSEEEE
T ss_pred EEEEeCCCCCcEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC----------CCCCceEE
Confidence 999988766554443221 34678999998777665554 457899999875332221211 12456677
Q ss_pred eecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1076 APHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1076 ~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
+.. ++.++++-...+.|...+..+++
T Consensus 252 av~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 252 TVF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEE--CCEEEEecCCCCeEEEEEccCCC
Confidence 763 45677777777888888755555
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.0015 Score=71.68 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=150.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
+..+|.+..+++ .++++ ..+.|+..++....... +......+..++|.+.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677777754 34443 24567777776543211 11123347899999866665555
Q ss_pred -eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001168 427 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 427 -~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 467889999988754221 22222334678999986664 4555666789999997644333333334456788999
Q ss_pred eccCCccEEEEEecC-CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001168 506 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
.|.. +.++++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 2455555555 78888888754443333333456789999998888887643 46789999986533322232
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001168 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45567773 34444555567788888866666655554
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.28 E-value=0.00049 Score=74.43 Aligned_cols=208 Identities=10% Similarity=-0.026 Sum_probs=132.7
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEEcCC----CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001168 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
...+..++|++++..|..+. ++.|..+++.+ ......+.........+++.+.++++.++-..++.|.+.+...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 45578999999877777666 68999999876 2222223323345678999873555555556778999999875
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCC--CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE
Q 001168 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
......+........++++.|++..|..+... +.|...+++.... . .+.... ......+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~--~~~~~~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y--SLVTEN-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E--EEECSS-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-E--EEEECC-----CCCceEEEEeccCCEEEE
Confidence 44333333334567899999976655554432 6788888765321 1 111111 134689999998887777
Q ss_pred E--ECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001168 992 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+ ..+.|..+|+.+.....+............+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 4578999999665544443221123456778884 45666666677889999988887665553
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.0033 Score=68.24 Aligned_cols=281 Identities=9% Similarity=-0.008 Sum_probs=151.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
....+.+|.|.+++. ++++| ..|.| ++..+.|+. |..... ........+.+++|.+ +..++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE
Confidence 345799999988876 56655 45654 333333331 111000 0011344688999976 44444
Q ss_pred EEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecCCCCCeEEE
Q 001168 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i 503 (1134)
++..+.|.. ..+.|+..........+...+..+.+.+++. .++.+. ++.|..- ...|+.- ....++...+..+
T Consensus 95 -~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S-~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 95 -VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRT-KDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp -EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEE-SSTTSSEEEEECSCCCCEEEE
T ss_pred -EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEE-cCCCCCCEEeecCCCcceEEE
Confidence 456664443 4455554432211112334578888887776 555554 5554322 1234332 2233456678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
++.+. +.+++.+...+..+-+|-....-...-......+..+.+.+++..++.+. ++.+++.+...|+.-..+
T Consensus 169 ~~~~~--~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 169 NRSPS--GEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp EECTT--SCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred EEcCC--CcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 88764 35665554433333333211111111223455788999999988776552 556666643323332222
Q ss_pred cCc---cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001168 584 SGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 584 ~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
... ....+..+.+.+++..++++ .+|.| .+..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEE
Confidence 211 11257888898877666655 46766 4556666655554421 112357889887655 46667788887666
Q ss_pred E
Q 001168 660 A 660 (1134)
Q Consensus 660 ~ 660 (1134)
+
T Consensus 319 ~ 319 (327)
T 2xbg_A 319 V 319 (327)
T ss_dssp C
T ss_pred c
Confidence 5
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.25 E-value=0.0011 Score=73.91 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=151.7
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEE-
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~- 426 (1134)
.-+|.+..+.+ .++++ ..+.|+..++.++.... +......+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 34566666644 34443 34678888876643221 11223457899999866655544
Q ss_pred eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001168 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
...+.|..++.+++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 567889999988754221 12222234578899987664 45556667789998876443333333344567889988
Q ss_pred ccCCccEEEEEecC-CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001168 507 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
|.. +.++++-... +.|...+++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 754 2444444444 78888888765444444444556789999998888877643 466799999764433323332
Q ss_pred ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001168 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 222 45667773 34455555577888888876777666665
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.00022 Score=72.99 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=131.0
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEEcCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE
Q 001168 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~ 916 (1134)
...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -....-.+++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 45799999999877666554 6889999998 888777642 235678889988 787777655678999998875432
Q ss_pred ---EEEec------CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC---cccccceeeecCC-CCCCCCcCceEEEEc
Q 001168 917 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPA-GRQSPLVGETKVQFH 983 (1134)
Q Consensus 917 ---~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~---~~~~~~~~~~~~~-~~~~~~~~v~~~~fs 983 (1134)
+.... .......+|+|+|+++.|.++.......+|.++. ...+ ..+.... ........+..+++.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l--~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL--HISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC--EEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce--eeecchhhccccccCCceeEEEc
Confidence 22221 1234468999999997777776655556666541 1111 1111100 000011356899999
Q ss_pred CCCcEEEE-E-ECCeEEEEeCCCccccccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001168 984 NDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 984 pdg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
|....|.+ + ..+.+.++|.+++.+..+.-..+. -..-..|+|.++|+ |+.+++-..+++|.-.
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 98776666 4 357788999987755544333221 23668999999998 4445777777777543
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.23 E-value=0.0002 Score=80.96 Aligned_cols=248 Identities=8% Similarity=0.010 Sum_probs=147.8
Q ss_pred ceEEEEeccC--CCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---C-cEEEEEcCCc
Q 001168 842 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 914 (1134)
Q Consensus 842 ~i~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g-~i~iwd~~~~ 914 (1134)
....++++|+ +..|..+. .+.|+.+|..+++..... ........++|++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 45555555 588999999877765443 3455689999999 77755443311 1 2333333222
Q ss_pred eE-EEEecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE
Q 001168 915 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 915 ~~-~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
.. ...+. .......+++.| ++.+.++-..++.|+.++..++...... ...... .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01121 223346788999 6777766667788999998876542211 111111 123579999999966664
Q ss_pred --ECCeEEEEeCCC--cccc---ccCC---CCC---------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEE
Q 001168 993 --HESQISVYDSKL--ECSR---SWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 993 --~d~~v~vwd~~~--~~~~---~~~~---~~~---------h~~~v~~v~~---------s~dg~~l~~~~~dg~I~vw 1044 (1134)
..+.|..++... ..+. .+.. ..+ ....-..+++ .++|.+.++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 457899988632 2111 1111 001 1234677999 6777777776677889999
Q ss_pred eCCCcceeeecCCccc------ccc--cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001168 1045 DAETLRFRCRIGPSAY------IPT--YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+. +|... ++..... ... .....-.+|.+++++|.+++++++-...+.|+..++.
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 56433 3222110 000 0011224688999996588888887778889888764
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.22 E-value=0.00034 Score=78.05 Aligned_cols=206 Identities=11% Similarity=0.034 Sum_probs=136.2
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001168 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
...+..++|++.+..|.... .+.|..+++........+.........+++.+.++.+.++-...+.|.+.+++.....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 45578999998777777665 6889999998765544444333456788998745555566566788999988755433
Q ss_pred EEecCcccceEEEEEecCCCEEEEEc-CC-CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE--E
Q 001168 918 TKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 993 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~-~D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~ 993 (1134)
..+........+|++.|++..|..+. .. +.|...+++..... .... .+ ......++|+|++..|..+ .
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~--~~----~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIAD--TH----LFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC--SS----CSCEEEEEEEGGGTEEEEEETT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--EEEE--CC----CCCeeeEEEeCCCCEEEEEECC
Confidence 33443445678999998766555544 34 67888887653321 1111 11 1346899999988877774 4
Q ss_pred CCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001168 994 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 994 d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.+.|..+|+.+.....+.... .....++++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 678999999665444333221 345678888 455666666677889999977787766654
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=0.00016 Score=87.45 Aligned_cols=128 Identities=6% Similarity=-0.064 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCeEEEEecCCC---------CceEEEEEcCCCCcEEEEEeCCC-----------cEEEEEcCCceEEEE
Q 001168 860 GGKVSLFNMMTFKVMTMFMSPP---------PAATFLAFHPQDNNIIAIGMEDS-----------SVQIYNVRVDEVKTK 919 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~~lasg~~dg-----------~i~iwd~~~~~~~~~ 919 (1134)
...+..||..+..-......+. ..-.++.|...++++++.|+.++ .|.+||..+.+-...
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 4568889988765433322111 12355556544788999998543 688888877654333
Q ss_pred e--cCcccce-EEEEEecCCCEEEEEcCC-----------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCC
Q 001168 920 L--KGHQNRI-TGLAFSPTLNALVSSGAD-----------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 920 l--~~h~~~i-~~l~~s~d~~~l~s~~~D-----------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
. ..+..+. .+++..|++++++.+|.+ ..+.+||..+.+-.. +..... +........+.||
T Consensus 448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~---~~~~~~---~R~~hs~a~ll~d 521 (656)
T 1k3i_A 448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSI---VRVYHSISLLLPD 521 (656)
T ss_dssp CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCSS---CCCTTEEEEECTT
T ss_pred ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee---cCCCCC---ccccccHhhcCCC
Confidence 2 2222222 344567899999999865 468999998765322 111111 1122345667899
Q ss_pred CcEEEEEE
Q 001168 986 QTHLLVVH 993 (1134)
Q Consensus 986 g~~l~~~~ 993 (1134)
|+.+++|+
T Consensus 522 g~v~v~GG 529 (656)
T 1k3i_A 522 GRVFNGGG 529 (656)
T ss_dssp SCEEEEEC
T ss_pred cEEEecCC
Confidence 99999865
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.21 E-value=0.0028 Score=68.33 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=142.6
Q ss_pred EEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeeeE-EecCCCC
Q 001168 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQY-TFEGHEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---~~~~~-~~~~h~~ 498 (1134)
|+.+.. ..|+..|+.+.+... .+ ........++|.+++.. ++++-..++.|..+++.. +.... .+...-.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 444433 458888988765432 22 23456789999987764 455566678999999875 12222 2332334
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001168 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
....+++.+.. +.+.++-...+.|.+.+++.................+++.|.+..|+.+.. ...+.|...++. |.
T Consensus 78 ~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 78 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-GV 153 (316)
T ss_dssp CCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-SC
T ss_pred CcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-CC
Confidence 55788886543 255566677889999998765444444444457789999997777766542 113678888875 33
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001168 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
....+....-...+.+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33333221222567899999887777655 5679999999754333333322222345677775 355555666678898
Q ss_pred EEECCCc
Q 001168 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 8887666
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.20 E-value=0.0043 Score=67.30 Aligned_cols=194 Identities=12% Similarity=0.071 Sum_probs=113.1
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEE-EEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEE-EEc--CCceE
Q 001168 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDEV 916 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i-wd~--~~~~~ 916 (1134)
..+..+++.+++..++++.+|.|.. ..+.++.- .....+...+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 4567788888888887776664422 12223221 12234556789999999 788887664 455444 442 33344
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCe
Q 001168 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1134)
+. ......+..+++.++++.++ ++.+|.+++++.+.++.-. .+..+ .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 23456788999999987665 4557877777533333111 11111 000012478899999999888888887
Q ss_pred EEEEeC-CCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001168 997 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 997 v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
|. +.. .++..........+...+.++.|.++++ +++++.+|.|.-++-
T Consensus 272 i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 73 333 3333332221112245678899986665 555668897776653
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00015 Score=82.10 Aligned_cols=247 Identities=12% Similarity=0.075 Sum_probs=145.2
Q ss_pred ceEEEEecc-CCCEEEEEe-CCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC-CC----cEEEEEcCCc
Q 001168 842 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 914 (1134)
Q Consensus 842 ~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~-dg----~i~iwd~~~~ 914 (1134)
....++++| ++..|.++. .+.|+.+|+.+++...... .......++|++ ++++|.++.. ++ .+.+.+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457799998 466666666 5889999998766544433 455688999999 7885555544 22 3444443 33
Q ss_pred eEE--EEecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE
Q 001168 915 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 915 ~~~--~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
... ..+.. .....+++++| ++.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 22221 23356788999 77777777778889999998755311 1111111 24689999999996666
Q ss_pred E--ECCeEEEEeCCCc--cc---cccCCC---CCC---------CCCeE-EEEEc--------cCCCEEEEEecCCcEEE
Q 001168 992 V--HESQISVYDSKLE--CS---RSWSPK---DAL---------PAPIS-SAIYS--------CDGLLVYAGFCDGAIGV 1043 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~--~~---~~~~~~---~~h---------~~~v~-~v~~s--------~dg~~l~~~~~dg~I~v 1043 (1134)
+ ..+.|..++.++. .+ ..+... .+. ...-. .++.. ++|.+.++-....+|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 4678999887331 11 111110 000 11223 45553 34566666566788999
Q ss_pred EeCCCcceeeecCCc-----ccccc--cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001168 1044 FDAETLRFRCRIGPS-----AYIPT--YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1044 wd~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
++ .+|......... .+... .....-..|..++++|+++.++++-...+.|+..++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 456443222110 00000 0001124688999998667777777777888887764
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.19 E-value=0.00075 Score=69.03 Aligned_cols=202 Identities=8% Similarity=0.057 Sum_probs=129.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 45799999999988788888888999999987 66544311 122 245778899999987777
Q ss_pred EeCCCeEEEEEcCCCCcccceeEee------cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeeeEEec----
Q 001168 426 AFSKHIVHLYTYNPTGELRQHLEID------AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQYTFE---- 494 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~-~~~~~~~~~~---- 494 (1134)
.-.++.+.++++.....+....... ........++|+|+++.++++.-..-..|+.|+- ..+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 6677899999987655322111111 2344578999999998533332222224555551 1111222221
Q ss_pred ---CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC---------CcEEEEEECCCCCEEEEEeeC
Q 001168 495 ---GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 495 ---~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.+-..+.+++++|.. +.+++.....+.+..+|... +.+..+.... .....++|.++|+..+++ .
T Consensus 167 ~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E- 242 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-E- 242 (255)
T ss_dssp HHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-T-
T ss_pred ccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-C-
Confidence 133467899999875 47777777888899998764 3444333332 267899999999866664 2
Q ss_pred CCCCCcEEEEe
Q 001168 563 KEGESHLVEWN 573 (1134)
Q Consensus 563 ~~~~~~i~~wd 573 (1134)
.+.++.+.
T Consensus 243 ---~n~~y~f~ 250 (255)
T 3qqz_A 243 ---PNRFYRFT 250 (255)
T ss_dssp ---TTEEEEEE
T ss_pred ---CceEEEEE
Confidence 34566554
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.18 E-value=0.0002 Score=87.89 Aligned_cols=244 Identities=7% Similarity=-0.050 Sum_probs=133.6
Q ss_pred cCCc-CeEEEEEC-CCCCEEEEEeC-C----CeEEEEEcCCC-CcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC-
Q 001168 406 DAAI-SVNRCVWG-PDGLMLGVAFS-K----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD- 476 (1134)
Q Consensus 406 ~h~~-~V~~i~~s-pdg~~las~~~-d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d- 476 (1134)
+|.. .+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4443 68899999 99999987643 2 35999999998 63321 1211 2457899999984 4444433
Q ss_pred ----CcEEEEECCCCee--eEEec-CCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccCCC-ce--eEe-cCCCC
Q 001168 477 ----KMIKVWDVVAGRK--QYTFE-GHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDY-DAPGN 542 (1134)
Q Consensus 477 ----~~i~iwd~~~~~~--~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~-~~--~~~-~~~~~ 542 (1134)
..|+++++.++.. ...+. ........+.|++++ ++|+..+. ...|.++|+.++. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688899887642 22332 223445667787654 77766552 3468888888753 22 222 22334
Q ss_pred cEEEEEECCCCCEEEEEeeCC-CCCCcEEEEeCCCC-eeEE-EecCccCcceEEEEEeCCCCEEE-EEeCCCe--EEEEE
Q 001168 543 WCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQ--IKFWD 616 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd 616 (1134)
...++.|+. |+.|+..+... .+...|..+++.++ .... .+....+..+..+.+. ++.|+ +...++. |++++
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEE
T ss_pred ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEe
Confidence 445555433 66665554321 23557888887753 3222 2332222234445544 45554 4556675 45556
Q ss_pred C-------CCCeeEEEEeCCCCCCCcceEEE------ccCCC-EEEEEeCC---CcEEEEECCCc
Q 001168 617 M-------DNMNMLTTVDADGGLPASPRLRF------NKEGS-LLAVTTSD---NGIKILANSDG 664 (1134)
Q Consensus 617 ~-------~~~~~~~~~~~~~~~~~v~~~~~------s~d~~-~l~~~~~d---g~i~iw~~~~~ 664 (1134)
+ .+++....+..... ...+.+ ++++. ++++.+.. ..+..+|+.++
T Consensus 398 l~~~~~~~~~g~~~~~l~l~~~---~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 398 ADSQDGVFKAGTGLREVVMEEP---IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp CCTTTSCCCTTTCCEECCCCCS---SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred cccccccccCCccceEECCCCc---eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 5 33331333432221 122334 34554 44443332 45667777665
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.18 E-value=0.001 Score=74.46 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=136.7
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEEcCCC----eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001168 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
...+..++|++.+..|...+ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 55688999999777777766 688999998752 223333334456788999874455555556678999999876
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEc-C-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE
Q 001168 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-A-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
......+........+|++.|.+..|.... . .+.|...+++...... .+.. + ......+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C----CCceEEEEEEeCCCEEEE
Confidence 554444443445578999999766665544 2 3678888887543211 1111 1 134689999998888877
Q ss_pred E--ECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001168 992 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+ ..+.|..+|+++.....+...........++++ ..+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 457899999976655544432222345567777 334556666677889999988887776654
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.09 E-value=0.0059 Score=68.22 Aligned_cols=232 Identities=9% Similarity=0.006 Sum_probs=147.1
Q ss_pred EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eeeEEecCCC
Q 001168 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1134)
+|+.+ ....|+..++.+.... .+......+..++|.+.+.. ++.+-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 3467888898875432 22334567889999987764 4455556788999997652 2223333344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001168 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567788887643 256666667889999998866555555545556889999998777776532 12367888887643
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001168 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.........-. ..+.+++++++..|+.+. ..+.|..+|++...................+++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33222222222 578899999888777764 5678999998765544444432223344567663 34455555667888
Q ss_pred EEEECCCc
Q 001168 657 KILANSDG 664 (1134)
Q Consensus 657 ~iw~~~~~ 664 (1134)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887676
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=0.00066 Score=76.76 Aligned_cols=246 Identities=10% Similarity=0.063 Sum_probs=136.8
Q ss_pred ceEEEEEec-CCcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001168 774 KVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 774 ~v~~~~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
....++++| ++..|+++...+.|+.+++.. +.+... ... ......++++++|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~----------------------~~v~~~-~~~----~~~P~~ia~d~~G 190 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK----------------------EYVSTV-YSG----LSKVRTICWTHEA 190 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT----------------------TEEEEE-ECC----CSCEEEEEECTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC----------------------CEEEEE-ecC----CCCcceEEEeCCC
Confidence 446889997 455566665546677666432 211110 111 4567899999999
Q ss_pred CEEEEEe--CC----eEEEEEcCCC-eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-Ccc
Q 001168 853 SYVMSAS--GG----KVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQ 924 (1134)
Q Consensus 853 ~~la~~s--dg----~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~ 924 (1134)
++|.++. ++ .+.+++.... .....+. .......++++|+++.++++-..++.|+.++..++....... +..
T Consensus 191 ~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 9666665 22 2444443321 1112222 123456788999566666666677899999998776422222 122
Q ss_pred cceEEEEEecCCC-EEEEEcCCCcEEEEeCCCc--ccccceeeecC---CCCC------CCCcCce-EEEEc--------
Q 001168 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKW--EKLKSRFIQAP---AGRQ------SPLVGET-KVQFH-------- 983 (1134)
Q Consensus 925 ~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~---~~~~------~~~~~v~-~~~fs-------- 983 (1134)
..-..|+|+|+++ ++++-...+.|..++.+.. +......+... .+.. ....... .++..
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 3467899999999 4555556788999877642 21111111111 1110 0011233 45553
Q ss_pred CCCcEEEE-EECCeEEEEeCCCccccccCC------C--C------CCCCCeEEEEEccC-CCEEEEEecCCcEEEEeCC
Q 001168 984 NDQTHLLV-VHESQISVYDSKLECSRSWSP------K--D------ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 984 pdg~~l~~-~~d~~v~vwd~~~~~~~~~~~------~--~------~h~~~v~~v~~s~d-g~~l~~~~~dg~I~vwd~~ 1047 (1134)
++|.++++ ...+.|+.++.++......-. . + +.-..-..|+++++ +.++++-..+..|+.++++
T Consensus 350 ~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 350 DEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 44666666 356789998875533222111 0 0 01235789999995 6555555566778887754
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.00099 Score=75.10 Aligned_cols=253 Identities=7% Similarity=-0.018 Sum_probs=149.7
Q ss_pred ceEEEEecc-CCCEEEEEe--CCeEEEEEcCCCeEEEEecCC---CCceEEEEE-------cCCCCcEEEEEeCCC----
Q 001168 842 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 904 (1134)
Q Consensus 842 ~i~~~~~s~-dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~lasg~~dg---- 904 (1134)
....|+|+| ++..|.++. .+.|++.|++++......... ......++| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555555 367999999887766554432 235899999 99 777666565543
Q ss_pred ---cEEEEEcCC-ceEE-----EEecCcccceEEEEEecC-CCEEEEEcCCCcEEEEeCC-------Cccc------c--
Q 001168 905 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 959 (1134)
Q Consensus 905 ---~i~iwd~~~-~~~~-----~~l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~-------~~~~------~-- 959 (1134)
.|.+.+... ++.. ..+... .....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665333 2221 122211 22357788994 5556667778889999998 4443 0
Q ss_pred --cceeeecCCCCCCCCcCceEEEEcCCCcEEEEE--ECCeEEEEeCCC--ccc---cccCC---CCCC---------CC
Q 001168 960 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKL--ECS---RSWSP---KDAL---------PA 1018 (1134)
Q Consensus 960 --~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~~--~~~---~~~~~---~~~h---------~~ 1018 (1134)
...+.....+ .....++|+|+|++|.++ ..+.|+.++..+ ..+ ..+.. ..++ ..
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011222111 245799999999965554 567888866622 211 11111 0111 12
Q ss_pred CeE-EEEEc-------cCCCEEEEEecCCcEEEEeCCCcceeeecCCccc------------cc--ccccCCCCccEEEe
Q 001168 1019 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY------------IP--TYAVSNTAHPLVIA 1076 (1134)
Q Consensus 1019 ~v~-~v~~s-------~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~ 1076 (1134)
.-. .++.. ++|.+.++=....+|+.++ .+|. +.++..... .. ......-..|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 334 45554 4566666666778899999 4563 444432210 00 00111234688999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1077 PHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1077 ~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
+++.+++++++-...+.|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998547888887788899999986544
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.99 E-value=0.00046 Score=78.05 Aligned_cols=245 Identities=11% Similarity=0.123 Sum_probs=137.2
Q ss_pred ceEEEEEecC--CcceeeeeccceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001168 774 KVVRLIYTNS--GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 774 ~v~~~~~s~~--g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
....+++.|+ +..|+.+...+.|+.++. .++..... ... ......++++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~----------------------~~g~v~~~-~~~----~~~P~giavd~d 192 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF----------------------VNQYVDIK-TTN----IGQCADVNFTLN 192 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET----------------------TTTEEEEE-CCC----CSCEEEEEECTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC----------------------CCCEEEEe-ecC----CCCccEEEECCC
Confidence 3468899984 333444443366766654 22322221 111 455889999999
Q ss_pred CCEEEEEeCC-----eEEEEEcCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe-c-Cc
Q 001168 852 DSYVMSASGG-----KVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-K-GH 923 (1134)
Q Consensus 852 g~~la~~sdg-----~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l-~-~h 923 (1134)
|+++++...+ .+...+...+.. ...+. .-.....++++|+++.+.++-..++.|+.+|..+++....+ . +.
T Consensus 193 G~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 193 GDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp CCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred CCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 9944444322 233333322111 01111 12345678899855666655556788999998877653332 2 11
Q ss_pred ccceEEEEEecCCC-EEEEEcCCCcEEEEeCCC--cccccceeeecC---CCCC------CCCcCceEEEE---------
Q 001168 924 QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDK--WEKLKSRFIQAP---AGRQ------SPLVGETKVQF--------- 982 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~--~~~~~~~~~~~~---~~~~------~~~~~v~~~~f--------- 982 (1134)
...-..|+|+|+++ +.++-...+.|+.++.+. +.......+... .+.. ........+++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 22234799999998 445555678899987653 321111111111 1110 01134678999
Q ss_pred cCCCcEEEE-EECCeEEEEeCCCccccccCCC---------------CCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEe
Q 001168 983 HNDQTHLLV-VHESQISVYDSKLECSRSWSPK---------------DALPAPISSAIYS-CDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 983 spdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~---------------~~h~~~v~~v~~s-~dg~~l~~~~~dg~I~vwd 1045 (1134)
.++|.++++ ...+.|+.++.++... .+... ......-..|+++ ++|.++++-..+..|+.++
T Consensus 352 d~~g~lyvaD~~n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 352 EDEYDFYFCDRDSHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp SCCEEEEEEETTTTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCcEEEEECCCCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 777777776 4567899998755322 22111 0112346789999 6777666666677888887
Q ss_pred CC
Q 001168 1046 AE 1047 (1134)
Q Consensus 1046 ~~ 1047 (1134)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.94 E-value=0.015 Score=62.47 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=141.8
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE-EEeCCCeEEEEEcCCCCcccce
Q 001168 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGELRQH 446 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la-s~~~dg~i~iwd~~~~~~~~~~ 446 (1134)
...|+..++.+...... . +......+..++|.+.+..|. +-...+.|..++.+++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~--~----------------~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--I----------------VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCE--E----------------EEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEE--E----------------EecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 56888899876531111 0 111223467899998655554 445678899999887642211
Q ss_pred eEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEE
Q 001168 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIK 524 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--~d~~i~ 524 (1134)
.+...-.....+++.+.+.. +.++-...+.|.++++........+.........+++.|.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222345678999986664 45555667899999976433222233444567889998754 3444444 357888
Q ss_pred EEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEE
Q 001168 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
..+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+... ....+++.. +..++
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lyw 223 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYW 223 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEE
Confidence 8887754443333334456789999998888887643 467899999864332222222222 455676653 34444
Q ss_pred EEeCCCeEEEEECCCCeeEEEEe
Q 001168 605 AAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
+-...+.|..++..+++....+.
T Consensus 224 td~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 224 TDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCeEEEEECCCCCceEEEe
Confidence 55567888888887777666554
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.0042 Score=70.00 Aligned_cols=253 Identities=11% Similarity=0.082 Sum_probs=141.6
Q ss_pred ceEEEEEec-CCcceeeeec-cceEEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe---
Q 001168 774 KVVRLIYTN-SGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL--- 848 (1134)
Q Consensus 774 ~v~~~~~s~-~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~--- 848 (1134)
....++|.| +...|+++.. .+.|++.|+.. +.+....-.+... ......++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~-~~~p~~ia~~~~ 196 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIP-TNRIRSIAFNKK 196 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSS-CSBEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccc-cCCCcEEEEeec
Confidence 456899998 3554555544 45666665432 2211110000001 345889999
Q ss_pred ----ccCCCEEEEEe-CC-------eEEEEEcCC-Ce--------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEE
Q 001168 849 ----SKNDSYVMSAS-GG-------KVSLFNMMT-FK--------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 849 ----s~dg~~la~~s-dg-------~i~vwd~~~-~~--------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
+++|+.|.++. .+ .|.+++... +. .+..+. ....++++|+++.++++-..++.|+
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~ 272 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK----QCNGATIHPINGELYFNSYEKGQVF 272 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC----CceEEEEcCCCCeEEEEECCCCEEE
Confidence 99999777776 32 266665443 11 222222 3457788995666666666788999
Q ss_pred EEEcC-------CceE-----------EEE-ec-CcccceEEEEEecCCCE-EEEEcCCCcEEEEeCCC--cccccc-ee
Q 001168 908 IYNVR-------VDEV-----------KTK-LK-GHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDK--WEKLKS-RF 963 (1134)
Q Consensus 908 iwd~~-------~~~~-----------~~~-l~-~h~~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~--~~~~~~-~~ 963 (1134)
.+|+. ++.. ... +. +....-+.|+|+|+|++ .++-...+.|+.++... +..... .+
T Consensus 273 r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~ 352 (496)
T 3kya_A 273 RLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNF 352 (496)
T ss_dssp EECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEE
T ss_pred EEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEe
Confidence 99997 5543 112 11 22334579999999995 45555677888866543 221000 11
Q ss_pred eec--CCCCC------CCCcCce-EEEEc-------CCCcEEEE-EECCeEEEEeCCCccccccCCC-------------
Q 001168 964 IQA--PAGRQ------SPLVGET-KVQFH-------NDQTHLLV-VHESQISVYDSKLECSRSWSPK------------- 1013 (1134)
Q Consensus 964 ~~~--~~~~~------~~~~~v~-~~~fs-------pdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~------------- 1013 (1134)
... ..+.. ....... .++.. ++|.++++ ..+++|+.++.++. +..+...
T Consensus 353 aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G 431 (496)
T 3kya_A 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWG 431 (496)
T ss_dssp EEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCC
T ss_pred cCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccc
Confidence 111 11111 0112344 44554 56666666 46789999997552 2222111
Q ss_pred --C------CCCCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCcceeee
Q 001168 1014 --D------ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAETLRFRCR 1054 (1134)
Q Consensus 1014 --~------~h~~~v~~v~~s~d-g~~l~~~~~dg~I~vwd~~~~~~~~~ 1054 (1134)
+ +.-..-..|+++++ |.+.++=..+..|+.++++....+..
T Consensus 432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 0 11245778999997 77666666678899999887655543
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.81 E-value=0.0078 Score=72.92 Aligned_cols=208 Identities=11% Similarity=-0.009 Sum_probs=132.1
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEEcCCC----eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001168 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
...+..++|++.+..|.... .+.|+.+++... .....+.........|++.+.++++.++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45678899999777666665 688999998753 223333334456778999884445666666778999999875
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEc-CC-CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE
Q 001168 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
......+........+|++.|.+..|..+. .. +.|...+++..... . ++. .+ ......|++.+.+..|+.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~-lv~--~~----l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S-LVT--EN----IQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-E-EEC--SS----CSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-E-EEe--CC----CCCceEEEEecCCCeEEE
Confidence 544333444445678999999866555554 22 67888888754321 1 111 11 135789999988877777
Q ss_pred E--ECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001168 992 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+ ..+.|..+++.+.....+....+......+|++.. +++.++-...+.|...+..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 5 45689999997666555543222233455677633 3444555566889889888886665553
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.77 E-value=0.00014 Score=87.75 Aligned_cols=208 Identities=11% Similarity=-0.014 Sum_probs=127.2
Q ss_pred CceEEEEeccCCCEEEEEe--CCeEEEEEcCC----CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc
Q 001168 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
..+..++|++++..|..+. .+.|..+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466789999888777775 57899999875 22222222122345678888635666665556789999998765
Q ss_pred eEEEEecCcccceEEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEE
Q 001168 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
.....+.........|++.|++.+|+.+.. . +.|...++..... . .++.. . ......++|+|++..|+.+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~-~l~~~-~-----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y-SLVTE-N-----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C-EESCS-S-----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e-EEEeC-C-----CCCccEEEEeccCCEEEEE
Confidence 433333333345678899987655554432 2 6787777764321 1 11111 1 1346789999987766664
Q ss_pred --ECCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCC
Q 001168 993 --HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 993 --~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
..+.|.++++.+.....+...........+|++..+ .++++....+.|..++..+|+.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 457899999966544444322111223345555443 4555556678999999999988877753
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.76 E-value=0.024 Score=68.69 Aligned_cols=232 Identities=9% Similarity=0.002 Sum_probs=143.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eeeEEecCCC
Q 001168 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1134)
+|+.+ ....|+..++...... .+......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44443 3445788888765432 22334556789999986664 4555666788999998652 2233333344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001168 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
.....|++.+.. +.++++-...+.|.+.+++.......+.........|++.|.+.+|+.... .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 556788887654 256666677889999999866555555445557889999998777776532 11367888887644
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001168 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.....+..... ..+.|++++.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+.|
T Consensus 548 ~~~~lv~~~l~-~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp CEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred ceEEEEeCCCC-CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 43333332222 678899998877777764 56789999997655555544333223345666532 2334444456778
Q ss_pred EEEECCCc
Q 001168 657 KILANSDG 664 (1134)
Q Consensus 657 ~iw~~~~~ 664 (1134)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88877666
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.75 E-value=0.011 Score=63.57 Aligned_cols=208 Identities=11% Similarity=0.004 Sum_probs=128.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCC-EEEEE
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVA 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~las~ 426 (1134)
.+.+++|.+.+..++.+-...+.|..++..++..... ++...-.....+++.+.+. +..+-
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~d 97 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWTD 97 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEEE
Confidence 5778999997666777777778999999876532110 0111223467899987554 44555
Q ss_pred eCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEE-cCCCcEEEEECCCCeeeEEe-cCCCCCeEEEE
Q 001168 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVC 504 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i~ 504 (1134)
...+.|.++++++..... .+.........+++.|.+.. ++.+- +..+.|...++. |.....+ ...-..-..++
T Consensus 98 ~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 98 SETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp TTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEE
T ss_pred CCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEE
Confidence 567899999987643211 22233455789999997663 23333 346788888864 4333333 22334568899
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001168 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
+++.. +.+.++-+..+.|..+|++.................+++. +..++.... +.+.|..++..+|+....+.
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~---~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW---STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec---CCCeEEEEECCCCCceEEEe
Confidence 98754 2455555667899999987644444444344556677774 334444321 36678888887776555544
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.72 E-value=0.0061 Score=64.61 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=118.9
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccC--Ccc---EEEEEe-c--CCeEEEEEccCCC-ceeEecC
Q 001168 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTA-I--DGKIKAWLYDYLG-SRVDYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--~~~---~l~s~~-~--d~~i~~wd~~~~~-~~~~~~~ 539 (1134)
+++.....+-+.++|+ +|+.+..+.. +.++.+.+-|.- .|. ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4565666788999998 9999988864 567777665521 111 233333 3 5789999874222 2333311
Q ss_pred ------CC-CcEEEEEE--CCC-CCEEEEEeeCCCCCCcEEEEeC-------CCCeeEEEecCccCcceEEEEEeCCCCE
Q 001168 540 ------PG-NWCTMMAY--SAD-GTRLFSCGTSKEGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQFDTTRNR 602 (1134)
Q Consensus 540 ------~~-~~v~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1134)
.. ..+..+++ +|. +++.+..+ ++++.+..|++ .+.+.++++.... .+..+...+...+
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~---~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVT---GKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEE---CSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEE---CCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 45667777 775 44333333 23678888888 2346778887654 5778889998899
Q ss_pred EEEEeCCCeEEEEECC-----CCeeEEEEeCCCCCCCcceEEE--ccCCC-EEEEEe-CCCcEEEEECC
Q 001168 603 FLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANS 662 (1134)
Q Consensus 603 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~d~~-~l~~~~-~dg~i~iw~~~ 662 (1134)
|+.+-++..|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .++++.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998777777755 3445554432222235677777 45666 666665 47799999986
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.64 E-value=0.082 Score=54.74 Aligned_cols=234 Identities=16% Similarity=0.153 Sum_probs=151.2
Q ss_pred EEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC-ceEEEEecC
Q 001168 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-~~~~~~l~~ 922 (1134)
.+.-.+|..+.+|.-...++.|+|+++.+.+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.-
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 356678999999888888999999999988888774 45677777764 35666554 45899999975 356666665
Q ss_pred cc----cceEEEEEecCCCEEEEEcC-------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCc----
Q 001168 923 HQ----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT---- 987 (1134)
Q Consensus 923 h~----~~i~~l~~s~d~~~l~s~~~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~---- 987 (1134)
|. ..|..-..+++.++++..|- .|.+.+|..+.+. -+..+||.. .-..|-.+|.
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCc
Confidence 54 35777888899998876652 3678899888754 233444431 1122333332
Q ss_pred -EEEEEE----CCeEEEEeC-CC---c------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001168 988 -HLLVVH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1134)
Q Consensus 988 -~l~~~~----d~~v~vwd~-~~---~------~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~ 1052 (1134)
.++.+. .+++.+-++ .. . ....+.+.+.-.+---++..|+.-..++.-+.-|.|++||++||.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 333332 257888887 21 1 11112222333555668888888888888899999999999999999
Q ss_pred eecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1053 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
..-+-. . ......+.+. ...=++.....|.|.--.+++..
T Consensus 295 ~~nrIS---------~-d~iF~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 295 YMNRIS---------G-ETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEECC---------S-SCEEEEEEEG-GGTEEEEEETTCEEEEEEECTTT
T ss_pred EEeccC---------C-CceEEecccC-CCCcEEEEcCCCEEEEEEECccc
Confidence 765532 1 2222233333 22345556688887776666544
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.61 E-value=0.0094 Score=62.61 Aligned_cols=202 Identities=11% Similarity=0.073 Sum_probs=125.1
Q ss_pred ceEEEEeccCCCEEEEEe--CCeEEEEEcCCCeEEEE-ecCC----C--CceEEEEE---cCCCCcEEEEEeC-------
Q 001168 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMSP----P--PAATFLAF---HPQDNNIIAIGME------- 902 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~-~~~~----~--~~i~~l~~---s~~~~~~lasg~~------- 902 (1134)
...+++|.+....+..++ .++|..||...+..... +.+- . ..+..|.| .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345688988666666666 89999999986644333 3321 1 13678999 68 6888876442
Q ss_pred ------CCcEEEEEcC---CceEEEEec--Ccc-----------cceEEEEEecCCCEEEEEcCC-CcEEEEeCCCcccc
Q 001168 903 ------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWEKL 959 (1134)
Q Consensus 903 ------dg~i~iwd~~---~~~~~~~l~--~h~-----------~~i~~l~~s~d~~~l~s~~~D-~~i~iWd~~~~~~~ 959 (1134)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.. ..
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence 6789999999 777665432 221 247899999999999988877 77666665543 22
Q ss_pred cceeeecCCCCCCCCcCceEEEEcCCCcEEEEE-ECCeEEEEeCCCcccc-ccC----CCCCCCCCeEEE-EEccCCCE-
Q 001168 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSR-SWS----PKDALPAPISSA-IYSCDGLL- 1031 (1134)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~-~~~----~~~~h~~~v~~v-~~s~dg~~- 1031 (1134)
....+..+.... ....+.++++|||+.|++. ..+.+..+|++.. .. .+. ...+.......+ ..-.+|+.
T Consensus 172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p-v~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP-YAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSS-SCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC-cceeecccccCCcccccCcccccccccCCEEE
Confidence 222222222221 1457899999999988883 4888999998421 11 011 100112234443 33357887
Q ss_pred EEEEecCCcEEEEeCCC
Q 001168 1032 VYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1032 l~~~~~dg~I~vwd~~~ 1048 (1134)
|++.+..+.+.+.+-+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 45555566666655443
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.58 E-value=0.098 Score=54.19 Aligned_cols=259 Identities=9% Similarity=0.103 Sum_probs=155.9
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC
Q 001168 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..+|.+.|+..+..+.+..-..+ +.-++|..+.++.-. ...++++|+++...+....... .|.--.|-. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis-~~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECS-SS
T ss_pred CCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecC-CC
Confidence 44688999988665443333222 344799888877754 6889999999999999888653 344444543 44
Q ss_pred EEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCcc
Q 001168 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1134)
.|+..+.. .|+-|++.......+.+..|...
T Consensus 119 ~L~lVT~t-aVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVTDN-AVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEESS-EEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcCC-cEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 56666544 89999987543344444333211
Q ss_pred CCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeec-------cceEEE
Q 001168 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 798 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~v 798 (1134)
....|.....+++.++++..+- .|.+.+
T Consensus 150 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 150 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 1234555556666665544332 367777
Q ss_pred eecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC-----EEEEEe----CCeEEEEEcC
Q 001168 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-----YVMSAS----GGKVSLFNMM 869 (1134)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~-----~la~~s----dg~i~vwd~~ 869 (1134)
|..+.... ..+.+ | ...- ..+-.+|. +++.+. .++++|.++.
T Consensus 185 YS~er~~s------------------------Q~ieG--h-aa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~ 235 (365)
T 2xzh_A 185 YSVDRKVS------------------------QPIEG--H-AASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 235 (365)
T ss_dssp EETTTTEE------------------------EEECC--S-EEEE--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECS
T ss_pred Eeeccccc------------------------ceeee--e-eeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 76543211 11222 3 1111 11111221 333333 2689999985
Q ss_pred CC--------e-EEEEecCC---CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001168 870 TF--------K-VMTMFMSP---PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 870 ~~--------~-~~~~~~~~---~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
.. + .+..+-.. .+--.++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|..-+...+..
T Consensus 236 ~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~ 314 (365)
T 2xzh_A 236 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA 314 (365)
T ss_dssp SCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGT
T ss_pred CCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCC
Confidence 32 1 11112111 23356788888 677888899999999999999999988776677777666655555
Q ss_pred EEEEEcCCCcEEEEeCCCcc
Q 001168 938 ALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~ 957 (1134)
=++.....|.|.--.++...
T Consensus 315 Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 315 GIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEEETTCEEEEEEECTTT
T ss_pred cEEEEcCCCEEEEEEECccc
Confidence 56666788877766666544
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.53 E-value=0.033 Score=60.86 Aligned_cols=230 Identities=14% Similarity=0.105 Sum_probs=123.5
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEEcCCCeE--EEEec---CCCCceEEEEEcCCC----CcEEEEEeCC-----CcE
Q 001168 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQD----NNIIAIGMED-----SSV 906 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~~----~~~lasg~~d-----g~i 906 (1134)
.....++|.|||+++++-.+|.|.+++ +++. +..+. ........++|+| + +.+.++-..+ +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence 346789999999966665589999998 4432 22222 1234678999999 5 4444444332 678
Q ss_pred EEEEcCCce-----E-EEEec---CcccceEEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccc-----
Q 001168 907 QIYNVRVDE-----V-KTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL----- 959 (1134)
Q Consensus 907 ~iwd~~~~~-----~-~~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~----- 959 (1134)
..|+...+. . +..+. +.......|+|.|||.+.++.+.. +.|.-++.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcc
Confidence 888876431 1 22233 111123589999999877775432 3454455442 100
Q ss_pred ------cceeeecCCCCCCCCcCceEEEEcC-CCcEEEEE-ECCe--------EEEEeCCCcc---------------cc
Q 001168 960 ------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV-HESQ--------ISVYDSKLEC---------------SR 1008 (1134)
Q Consensus 960 ------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~-~d~~--------v~vwd~~~~~---------------~~ 1008 (1134)
..... ..++ .....++|+| +|.++++- ..+. |.+... +.. ..
T Consensus 187 ~~~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 187 LGRRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTCTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCC
T ss_pred cCCCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcC
Confidence 00000 0111 2357889999 67766662 2222 433322 110 00
Q ss_pred ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeec-CCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001168 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1009 ~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
..... .+......++| .+|.++++....+.|...+++........ ....+. .....+..+++.| ||.++++
T Consensus 260 p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 260 PLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGP-DGALYVT 331 (352)
T ss_dssp CSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECT-TSCEEEE
T ss_pred CeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECC-CCcEEEE
Confidence 00000 11235677888 67777777666777888877654321000 000111 1124678899988 6777776
Q ss_pred Ee
Q 001168 1088 GM 1089 (1134)
Q Consensus 1088 ~~ 1089 (1134)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.42 E-value=0.031 Score=59.24 Aligned_cols=197 Identities=11% Similarity=0.189 Sum_probs=124.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecC----CCc--EEEEEEcC--CCcEEEEEC--CCCe
Q 001168 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP----NKQ--LCIVTCGD--DKMIKVWDV--VAGR 488 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d----~~~--~~l~sg~~--d~~i~iwd~--~~~~ 488 (1134)
...+++....++-+.+||+ +|+.+. .+.. +.++.+..-|+ |+. +.+++.-. +++|.+|++ .++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~---~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLH---SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEE---EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEE---EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4456666677888999999 666554 3332 45677766552 322 23455555 689999966 3443
Q ss_pred eeEEecC------CC-CCeEEEEe--eccCCccEEEEEecCCeEEEEEccCC-------CceeEecCCCCcEEEEEECCC
Q 001168 489 KQYTFEG------HE-APVYSVCP--HHKESIQFIFSTAIDGKIKAWLYDYL-------GSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 489 ~~~~~~~------h~-~~v~~i~~--~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
+..+.. .. ..+..+|+ ++.....++++...+|.+..|++... +.+..+.. .+.+..+...+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 555422 11 55667777 44333247888889999999998432 22334444 357888889888
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCC-----CCeeEEEec-CccCcceEEEEE--eCCCC-EEEEEe-CCCeEEEEECC-CCe
Q 001168 553 GTRLFSCGTSKEGESHLVEWNES-----EGAIKRTYS-GFRKRSLGVVQF--DTTRN-RFLAAG-DEFQIKFWDMD-NMN 621 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~-----~~~~~~~~~-~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~ 621 (1134)
...|+.+-. +.-|..++.+ +++.+..+. ++-...+..+++ .++++ +|++++ .+.++.+||.. +.+
T Consensus 191 ~g~Lyv~eE----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 191 YGRLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp TTEEEEEET----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCeEEEecc----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence 888888753 4447777754 345665553 222225777777 45555 666665 67899999996 666
Q ss_pred eEEEEe
Q 001168 622 MLTTVD 627 (1134)
Q Consensus 622 ~~~~~~ 627 (1134)
.+..+.
T Consensus 267 ~vg~f~ 272 (355)
T 3amr_A 267 YVADFR 272 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666664
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.40 E-value=0.05 Score=59.33 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=127.0
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEEcCCCe-EEEEec---CCCCceEEEEEcCC---CCcEEEEEeC---C----CcE
Q 001168 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SSV 906 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~lasg~~---d----g~i 906 (1134)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4468899999998666655899999974 454 222221 12345789999993 2555444332 3 567
Q ss_pred EEEEcCCc-------eEE-EEec---CcccceEEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccc---
Q 001168 907 QIYNVRVD-------EVK-TKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL--- 959 (1134)
Q Consensus 907 ~iwd~~~~-------~~~-~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~--- 959 (1134)
..|+...+ +.+ ..+. .|. ...|+|.|||.+.++.+.. +.|.-.+.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence 77776643 111 1222 232 3579999999987775432 3344444432 100
Q ss_pred ---cceeeecCCCCCCCCcCceEEEEcC-CCcEEEEE--ECC--eEEEEeCCCcc---------------ccccCCCCCC
Q 001168 960 ---KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HES--QISVYDSKLEC---------------SRSWSPKDAL 1016 (1134)
Q Consensus 960 ---~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~--~d~--~v~vwd~~~~~---------------~~~~~~~~~h 1016 (1134)
...+. ..++ .....++|+| +|+++++- .++ .|.+... +.. ..........
T Consensus 185 pf~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 185 PFPNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp SSTTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 00010 0112 2457899999 67766662 221 2443332 110 0000000001
Q ss_pred CCCeEEEEEc-------cCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEe
Q 001168 1017 PAPISSAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGM 1089 (1134)
Q Consensus 1017 ~~~v~~v~~s-------~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~ 1089 (1134)
......++|. .+|.++++....+.|...++.....+.... .... +....+..+++.| ||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~~----~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFFK----NVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EECT----TTSCCEEEEEECT-TSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eecc----CCCCCeeEEEECC-CCcEEEEEe
Confidence 3467888883 678777777777889998888532221100 0110 1124678899999 777777764
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.40 E-value=0.22 Score=53.86 Aligned_cols=234 Identities=17% Similarity=0.161 Sum_probs=151.4
Q ss_pred EEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecC
Q 001168 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~ 922 (1134)
-+.-.+|..+.+|.-...++.|||+++.+.+..+.-.. .|.-=.|-. .+.|+..+ +..|+-|++... .+.+.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 45677888898888888999999999998888877433 555556643 34666554 568999999743 56666665
Q ss_pred cc----cceEEEEEecCCCEEEEEcC-------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCC-----
Q 001168 923 HQ----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----- 986 (1134)
Q Consensus 923 h~----~~i~~l~~s~d~~~l~s~~~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg----- 986 (1134)
|. ..|..-..++|.++++..|- .|.+.+|.++.+.. +..+||.. .-..+-.+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s------Q~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE------EEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc------chheeeee-----eeEEEecCCCCCCc
Confidence 54 35777888999998886552 36788998887542 33445431 112222232
Q ss_pred cEEEEEE----CCeEEEEeC-CC---c------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001168 987 THLLVVH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1134)
Q Consensus 987 ~~l~~~~----d~~v~vwd~-~~---~------~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~ 1052 (1134)
..++.+. .+++.+.++ .. . ....+.+.+.-.+--.++..|+.-..++..+.-|.|+++|++||.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2233332 267888887 21 1 11112222333555678888998888888999999999999999999
Q ss_pred eecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001168 1053 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
..-+.. . ......+.+. ...=++.....|.|.--.+++..
T Consensus 294 ~~nrIs---------~-~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNRIS---------G-ETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEECC---------S-SCEEEEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred eeeccc---------C-CceEEecccC-CCCcEEEEccCceEEEEEEcccc
Confidence 765522 1 2223333333 23455666688888777766544
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.40 E-value=0.22 Score=53.82 Aligned_cols=259 Identities=9% Similarity=0.079 Sum_probs=158.9
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC
Q 001168 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..++.+.|+.++..+.+..-..+ +.-++|..+.++.-. ..++.++|+++...+....... .|.--.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-C
Confidence 45789999988665543333222 355799888777754 7899999999999999888654 3444555443 4
Q ss_pred EEEEEeCCCcEEEEECCCchhhhhhccCCccccCCCCCCCCCCCCcccccCCCCcccccccCCCCCCCCCCCCCcccCcc
Q 001168 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1134)
.|+..+. ..|+-|++.......+.+..|...
T Consensus 118 ~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 5655554 489999987543344444333211
Q ss_pred CCCCCccccCcccccccccccccccccCCCCCccceeEEecCCcccccceEEEEEecCCcceeeeec-------cceEEE
Q 001168 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 798 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~v 798 (1134)
....|.....+++.++++..|- .|.+.+
T Consensus 149 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 149 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 1234555566666666554332 367777
Q ss_pred eecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC-----CEEEEEe----CCeEEEEEcC
Q 001168 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMSAS----GGKVSLFNMM 869 (1134)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg-----~~la~~s----dg~i~vwd~~ 869 (1134)
|..+.... ..+.+ | ...... +-.+| ..++.+. .++++|.++.
T Consensus 184 YS~er~~s------------------------Q~ieG--h-aa~F~~--~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~ 234 (494)
T 1bpo_A 184 YSVDRKVS------------------------QPIEG--H-AASFAQ--FKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (494)
T ss_dssp EESTTCCE------------------------EEECC--S-EEEEEE--EECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred eecccccc------------------------chhee--e-eeeeEE--EecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 76543211 11222 3 111111 11122 2344443 3789999985
Q ss_pred CC--------eEEEEe-cC---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001168 870 TF--------KVMTMF-MS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 870 ~~--------~~~~~~-~~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
.. +....+ -. ...--.++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|..-+...+..
T Consensus 235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~ 313 (494)
T 1bpo_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA 313 (494)
T ss_dssp CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTT
T ss_pred CCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCC
Confidence 42 111111 11 123356888888 677888899999999999999999988776677777766666666
Q ss_pred EEEEEcCCCcEEEEeCCCcc
Q 001168 938 ALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~ 957 (1134)
=++.....|.|.--.++...
T Consensus 314 Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 314 GIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEETTCEEEEEEECTTT
T ss_pred cEEEEccCceEEEEEEcccc
Confidence 66777788877776666544
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.38 E-value=0.0011 Score=79.89 Aligned_cols=227 Identities=8% Similarity=0.006 Sum_probs=130.4
Q ss_pred CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC----CeeeEEecCCCCCeEEE
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA----GRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~----~~~~~~~~~h~~~v~~i 503 (1134)
..+.|+..++.+.+.... + .....+..++|.+.+.. ++++-...+.|+.+++.. ......+.........+
T Consensus 384 ~~~~I~~id~~~~~~~~~---~-~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp CTTC-CEECTTSCCEECC---S-CCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred CccceEEEeCCCCcceee---e-ccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 345678888876543321 1 12345678999987763 344445567899999875 22222222122234567
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001168 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
++.+.. +.++++-...+.|.++++........+.........+++.|.+.+|+.... ...+.|..+++.... ...+
T Consensus 459 avD~~~-g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~-~~~l 534 (699)
T 1n7d_A 459 AVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD-IYSL 534 (699)
T ss_dssp ECCCSS-SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCC-CCEE
T ss_pred EEEeeC-CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCC-eeEE
Confidence 775433 255556566788999998755444443333345678899997776665432 113668877765322 2222
Q ss_pred cCccCcceEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001168 584 SGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
....-...+.|+|+|++..|+.+ +..+.|..+++........+...........+++..+ .++++....+.|..++..
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 21111245679999987665554 4677899999875443333322222223456666544 444555567899999987
Q ss_pred Cc
Q 001168 663 DG 664 (1134)
Q Consensus 663 ~~ 664 (1134)
++
T Consensus 614 ~G 615 (699)
T 1n7d_A 614 TG 615 (699)
T ss_dssp TE
T ss_pred CC
Confidence 77
No 310
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.34 E-value=0.00017 Score=57.88 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.3
Q ss_pred CCcchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCc
Q 001168 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1134)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1134)
|+..+.||..||..||+|.||..||.+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 888999999999999999999999999999999764
No 311
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=97.31 E-value=0.00057 Score=63.54 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=68.4
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001168 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+|+.|.|||||..|+..+|..||++.-..++..+.+.+++|+.+....++.+++....++. .+.+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s 126 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 126 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence 3444 9999999999999999999999999998877777778899999999999988888887777755 3555
Q ss_pred HHHHHHHHHh
Q 001168 140 RNIMLVELKK 149 (1134)
Q Consensus 140 r~~l~~~l~~ 149 (1134)
-..|+..|++
T Consensus 127 ~~lL~~fL~~ 136 (156)
T 2nxp_A 127 YQLLKRHLQE 136 (156)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5777777776
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.29 E-value=0.033 Score=60.03 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=117.4
Q ss_pred cCeEEEEECCCCCEEEEEe------------CCCeEEEEEcCCCCcccceeEeec-----ccCCeeEEEEec--CCCcEE
Q 001168 409 ISVNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAH--PNKQLC 469 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~------------~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~l~~s~--d~~~~~ 469 (1134)
...-.++..|+|..+++++ .+|.|.++|.++.........+.+ .......+.+.+ ++...+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 3456677889886666652 689999999974321111113333 233566777766 454323
Q ss_pred EEEEcC--CCcEEEEECCCC--e--eeEEecCC-CCCeEEEEeeccCCccEEEEEec-----------------CCeEEE
Q 001168 470 IVTCGD--DKMIKVWDVVAG--R--KQYTFEGH-EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKA 525 (1134)
Q Consensus 470 l~sg~~--d~~i~iwd~~~~--~--~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~-----------------d~~i~~ 525 (1134)
+++-.. +.+|.+|++..+ . .+.++.+. -...+.+.+.++ |.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~--G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP--EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET--TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC--CCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333333 567888877643 2 22344432 235678888664 366665431 234444
Q ss_pred EEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-Cee--EEEecCccCcceEEEEEeC-CCC
Q 001168 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRN 601 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 601 (1134)
+|. .+.. .+...-...+.++|+||++.++.+.. ..+.|..|++.. ++. .+.+.. ......+++.+ +|+
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 443 3222 22222335688999999999887754 356799999863 332 223321 23567789999 598
Q ss_pred EEEEEeCC-CeEEEEECC--CCeeEEEEe
Q 001168 602 RFLAAGDE-FQIKFWDMD--NMNMLTTVD 627 (1134)
Q Consensus 602 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 627 (1134)
..+++..+ +.|..|+.. .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 88766533 344445544 244444444
No 313
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=97.24 E-value=0.00029 Score=63.69 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001168 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+||.|+||||+..|+..+|..|+++.-..+... .+.+++|+.+....++.+++....+++ ++.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4444 999999999999999999999999999888777766 899999999999888887776665543 3566
Q ss_pred HHHHHHHHHhh
Q 001168 140 RNIMLVELKKL 150 (1134)
Q Consensus 140 r~~l~~~l~~~ 150 (1134)
-+.|+..|++.
T Consensus 107 ~~lL~~fL~~~ 117 (138)
T 2j4b_A 107 FDLLINFLEER 117 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 67777777774
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.23 E-value=0.0049 Score=64.73 Aligned_cols=164 Identities=9% Similarity=0.117 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecC----cc--cceEEEEE---ecCCCEEEEEc---------
Q 001168 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKG----HQ--NRITGLAF---SPTLNALVSSG--------- 943 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~----h~--~~i~~l~~---s~d~~~l~s~~--------- 943 (1134)
---+++|++.++.++++.-..++|..||...+..... +.+ .. ..+.+|.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 3457889875566666555899999999876643333 332 11 13579999 68888777543
Q ss_pred ----CCCcEEEEeCC---CcccccceeeecCC-------CCCCCCcCceEEEEcCCCcEEEE-EEC-CeEEEEeCCCccc
Q 001168 944 ----ADAQLCMWSID---KWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLV-VHE-SQISVYDSKLECS 1007 (1134)
Q Consensus 944 ----~D~~i~iWd~~---~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~-~~d-~~v~vwd~~~~~~ 1007 (1134)
.+..|..+|+. +++.....-+.... +.. ......++..++|+..++ +.. +.|...+..++..
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 26779999999 77654322221110 001 124689999999998888 566 7777777766644
Q ss_pred cccCCC---CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001168 1008 RSWSPK---DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1008 ~~~~~~---~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
..+... .......+.|++.|||++|++....|.+..+|+.+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 433211 11123467999999999988887799999999984
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.12 E-value=0.044 Score=58.46 Aligned_cols=193 Identities=10% Similarity=-0.021 Sum_probs=99.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCc--ccceeEeecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001168 419 DGLMLGVAFSK-----HIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 486 (1134)
Q Consensus 419 dg~~las~~~d-----g~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~ 486 (1134)
+++.++.|+.+ ..+.+||..+.+. ......+......-..+. .+++ +++.|+.+ ..+.++|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67777777754 4689999887651 111111111111111222 2555 56666643 3688999888
Q ss_pred CeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEE
Q 001168 487 GRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLF 557 (1134)
Q Consensus 487 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~ 557 (1134)
.+.... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..... ....+.+ +++.++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 211 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYV 211 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEE
Confidence 764332 2211111122222 33677777654 4588888876544332211111 1222222 566666
Q ss_pred EEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCee
Q 001168 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1134)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1134)
.++.+... ...+.+||+.+.+....-.......-.+++. -+++.++.|+.+ ..+.+||+.+.+-
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 76653322 3569999998876544322111111112222 256666777654 4678888877653
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.09 E-value=0.031 Score=59.71 Aligned_cols=232 Identities=12% Similarity=0.028 Sum_probs=118.1
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001168 419 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 487 (1134)
Q Consensus 419 dg~~las~~-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~~ 487 (1134)
++..++.|+ .+ ..+.+||..+.+-.. ...+... .....+...++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRK--RRYVASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSC--CBSCEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChh--hccccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 368889987754221 1111111 111122223455 66667654 46899998887
Q ss_pred e---eeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCE
Q 001168 488 R---KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1134)
Q Consensus 488 ~---~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 555 (1134)
+ .... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..... ...++. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 6 3222 2111111122222 23667777644 3578888876554332221111 122222 26666
Q ss_pred EEEEeeCCC-CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCC
Q 001168 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1134)
++.++.+.. ....+.+||+.+.+....-.......-.++.. -++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 667665322 13568999998876544322111111112222 255666667653 56899999887654432222
Q ss_pred CCCCCcceEEEccCCCEEEEEeCC-----CcEEEEECCCc
Q 001168 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~d-----g~i~iw~~~~~ 664 (1134)
.. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11 11222233367777777765 35788888765
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.04 E-value=0.051 Score=57.94 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=115.7
Q ss_pred CCEEEEEeCC----CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCeee
Q 001168 420 GLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRKQ 490 (1134)
Q Consensus 420 g~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~~~~~ 490 (1134)
+..++.|+.+ ..+..||..+.+- .....+...... .+++ .-++. +++.|+.+ ..+.+||+.+.+..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCR-AGMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBS-CEEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCccccc-ceEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555543 3578888877532 111111111111 1122 22454 66666654 36889998887643
Q ss_pred EE--ecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEee
Q 001168 491 YT--FEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 491 ~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~ 561 (1134)
.. +.........+.+ ++.+++.|+.++ .+.+||+.+.+-...-..... ...++. -+++.++.++.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 32 1111111122222 236777777553 477888776543332211111 112222 25666666665
Q ss_pred CCCC---CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCC
Q 001168 562 SKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 562 ~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+... ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3458999998876544321111101112222 256666777653 4689999988765443222211
Q ss_pred CcceEEEccCCCEEEEEeCCC-----cEEEEECCCc
Q 001168 634 ASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg-----~i~iw~~~~~ 664 (1134)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222233677777877653 4888888765
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.03 E-value=0.099 Score=55.83 Aligned_cols=234 Identities=7% Similarity=-0.074 Sum_probs=118.3
Q ss_pred CeEEEEEeCC--CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEeCC----CeE
Q 001168 359 QTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIV 432 (1134)
Q Consensus 359 ~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d----g~i 432 (1134)
..+++.|+.+ ..+.+||..+++-..... +......-.++. -+++.++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEE--ECCEEEEEeCCCCCCcceE
Confidence 3467777654 578888888765332100 011111122222 267777787754 678
Q ss_pred EEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC------CcEEEEECCCCeeeEE--ecCCCCCeEEEE
Q 001168 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQYT--FEGHEAPVYSVC 504 (1134)
Q Consensus 433 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~i~ 504 (1134)
.+||..+.+-.. ...+.. ......+..-+++ +++.|+.+ ..+.+||+.+.+.... +......-.++.
T Consensus 73 ~~~d~~~~~W~~-~~~~p~--~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 73 DCYNVVKDSWYS-KLGPPT--PRDSLAACAAEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEETTTTEEEE-EECCSS--CCBSCEEEEETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEeCCCCeEEE-CCCCCc--cccceeEEEECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 899988754221 111111 1111112222555 56666655 4689999988765432 111111111222
Q ss_pred eeccCCccEEEEEec---------CCeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEeeCCC-CCCcEEEE
Q 001168 505 PHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE-GESHLVEW 572 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~w 572 (1134)
+ ++.+++.|+. -..+.+||+.+..-...-..... ....+.+ +++.++.++.+.. ....+.+|
T Consensus 148 ~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y 221 (306)
T 3ii7_A 148 A----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYY 221 (306)
T ss_dssp E----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEE
T ss_pred E----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEe
Confidence 1 3356666654 34578888877643332221111 1122222 5666666664321 12458999
Q ss_pred eCCCCeeEEEecCccCc-ceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEE
Q 001168 573 NESEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLT 624 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 624 (1134)
|+.+.+....-...... ...++.+ ++..++.|+.+ ..+.+||+.+.+-..
T Consensus 222 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 222 DIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp ETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred eCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 99887644331111110 1222222 56677777743 568999998866443
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.02 E-value=0.049 Score=58.24 Aligned_cols=230 Identities=7% Similarity=-0.039 Sum_probs=117.1
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeeeEE--
Q 001168 421 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYT-- 492 (1134)
Q Consensus 421 ~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~-- 492 (1134)
..++.|+. ...+.+||..+++-.. ...+......-..+ .-++. +++.|+.+ ..+.++|+.+++....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACV--FWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEE--EETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEE--EECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 3568889988754221 11111111111122 23555 66667654 6788999988765432
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEeeCCC
Q 001168 493 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
+.........+.+ ++.+++.|+.+ ..+.+||..+..-...-..... ...++. -+++.++.++.+..
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2111111122222 33677777765 4588888876554332211111 112222 35666666665332
Q ss_pred C-----CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCCC
Q 001168 565 G-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 565 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
. ...+.+||+.+.+....-.......-.++... +++.++.||.+ ..+.+||+.+.+-...-........
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 2 35689999988765433221111111122222 55666666643 4689999988764433222211111
Q ss_pred cceEEEccCCCEEEEEeCC-----CcEEEEECCCc
Q 001168 635 SPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~d-----g~i~iw~~~~~ 664 (1134)
..++. -++++++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 12222 267788888754 56888888765
No 320
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=97.00 E-value=0.00035 Score=63.79 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=74.0
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001168 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+||.|+||||+..| ..+|..|+++.-..+...+.+.+++|+.+....++.+++....+++ ++.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4444 99999999999999999 9999999998877776567788889998888888877776666654 3555
Q ss_pred HHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHH
Q 001168 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1134)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1134)
-..|+..|++.-.. -.+-|..+|++.+.
T Consensus 109 ~~lL~~fL~~~~~~-------------gg~~ll~Iin~~i~ 136 (148)
T 2j49_A 109 LNLLLYFLNENESI-------------GGSLIISVINQHLD 136 (148)
T ss_dssp HHHHHHHHHHTGGG-------------THHHHHHHHHHHEE
T ss_pred HHHHHHHHHHcCcc-------------cHHHHHHHHHHhee
Confidence 67777777763221 13357777776543
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.99 E-value=0.06 Score=58.75 Aligned_cols=230 Identities=12% Similarity=0.023 Sum_probs=118.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcccceeEe---ecccCCeeEEEEecC---CCcEEEEEEcCC-----Cc
Q 001168 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 478 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~d---~~~~~l~sg~~d-----~~ 478 (1134)
.-..++|.|||+++++ ..+|.|.+++ +++ ......+ .........++|+|+ +..++ ++...+ +.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY-v~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVY-AYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEE-EEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEE-EEEecCCCCCccE
Confidence 4678999999985554 5679999998 332 1111111 112346789999998 55433 333322 57
Q ss_pred EEEEECCCCe-----eeE-Eec---CCCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEccCC-----
Q 001168 479 IKVWDVVAGR-----KQY-TFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 531 (1134)
Q Consensus 479 i~iwd~~~~~-----~~~-~~~---~h~~~v~~i~~~~~~~~~~l~s~~~-------------d~~i~~wd~~~~----- 531 (1134)
|..++...+. .+. .+. +.......++|.|+ |.+.++.+. .+.|..++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876432 121 233 11112357888764 455555432 245655555420
Q ss_pred -------CceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCC-----CCcEEEEeCCC----------------CeeEEE
Q 001168 532 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 582 (1134)
Q Consensus 532 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 582 (1134)
.....+.........++|+| ++...++-. ..+. ...|.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 00111111123456789999 555554432 1111 11243332211 012222
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee------EEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001168 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
+..+. ....++| .+|..+++.-..+.|...+++.... ...+-. ....+..+++.|||.++++...
T Consensus 264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEECS
T ss_pred cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEeC
Confidence 32121 3456677 4566666555667787777664321 122211 1236789999999987766543
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.97 E-value=0.072 Score=58.13 Aligned_cols=240 Identities=11% Similarity=0.053 Sum_probs=127.7
Q ss_pred ceEEEEeccCCC-EEEEEeCCeEEEEEcCCCeEEEEec-------CCCCceEEEEEcCC---CCcEEEEEeC-------C
Q 001168 842 SAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME-------D 903 (1134)
Q Consensus 842 ~i~~~~~s~dg~-~la~~sdg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~lasg~~-------d 903 (1134)
....++|.|||+ ++++-..|.|++++.. ++....+. ........++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468899999999 6655458999999854 33221111 12235689999993 3444444332 2
Q ss_pred CcEEEEEcCCc-------eEE-EEec-----CcccceEEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcc
Q 001168 904 SSVQIYNVRVD-------EVK-TKLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWE 957 (1134)
Q Consensus 904 g~i~iwd~~~~-------~~~-~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~ 957 (1134)
..|..|++..+ +.+ ..+. .|. -..|+|.|||.+.++.+.. +.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1111 132 3579999999877776542 345555554310
Q ss_pred cc----------cceeeecCCCCCCCCcCceEEEEcC-CCcEEEEEE--CCeEEEEeC-CCcc----------------c
Q 001168 958 KL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVH--ESQISVYDS-KLEC----------------S 1007 (1134)
Q Consensus 958 ~~----------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~--d~~v~vwd~-~~~~----------------~ 1007 (1134)
.. ..... ..++ .....++|.| +|+++++-. ++.=.|.-+ .+.. +
T Consensus 176 p~~npf~~~~~~~~~i~--a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW--SYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEE--EECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEE--EEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 00000 0111 2468899999 676666622 211222222 1110 0
Q ss_pred --------cccCCC---CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCC
Q 001168 1008 --------RSWSPK---DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNT 1069 (1134)
Q Consensus 1008 --------~~~~~~---~~h~~~v~~v~~s~-------dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1134)
..+... -.+......++|.. +|+++++....+.|...+++.++...... ... ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DRG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GGC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CCC
Confidence 000000 01123567788863 57777777778888888887664432211 110 112
Q ss_pred CccEEEeecCCCCCEEEEEe-CCCcEEEEecC
Q 001168 1070 AHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1100 (1134)
Q Consensus 1070 ~~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~~~ 1100 (1134)
..+..+++.| ||.++++.. .+| +||.+.
T Consensus 323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp CCEEEEEECT-TSCEEEEECSTTE--EEEEEE
T ss_pred CceeEEEECC-CCcEEEEEeCCCC--EEEEEe
Confidence 4688899999 777777543 344 556553
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.90 E-value=0.3 Score=53.15 Aligned_cols=231 Identities=16% Similarity=0.085 Sum_probs=119.5
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccccceeeccccccccccccccccCCcCeEEEEECCC---CCE
Q 001168 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd---g~~ 422 (1134)
...+.++|.|||+ ++++ ..+|.|.+++ .+++ .+.. + . +..........|+|+|+ +..
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4688999999997 5554 5569999887 3443 1110 0 0 11122356889999998 555
Q ss_pred EEEEeC----C----CeEEEEEcCCCC-ccc---ce-eEee-cccCCeeEEEEecCCCcEEEEEEcC------------C
Q 001168 423 LGVAFS----K----HIVHLYTYNPTG-ELR---QH-LEID-AHVGGVNDIAFAHPNKQLCIVTCGD------------D 476 (1134)
Q Consensus 423 las~~~----d----g~i~iwd~~~~~-~~~---~~-~~~~-~h~~~v~~l~~s~d~~~~~l~sg~~------------d 476 (1134)
|.++.. + +.|..|+...+. .+. .+ ..+. +.......++|.|||. +++..|+. .
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~ 168 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLA 168 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCS
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCC
Confidence 554433 3 578888876541 111 11 1122 1111346799999997 23333321 2
Q ss_pred CcEEEEECCCCe----------eeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCC-----------
Q 001168 477 KMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLG----------- 532 (1134)
Q Consensus 477 ~~i~iwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~----------- 532 (1134)
+.|.-.+.. |+ .+.. .++. ....++|++.. |.++++-...+ .|.+. ..+.
T Consensus 169 G~I~ri~~d-G~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 169 GKILRVDEE-GRPPADNPFPNSPIWS-YGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SEEEEECTT-SCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred eEEEEEcCC-CCCCCCCCCCCCcEEE-EccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 445555543 32 1221 2333 34567887632 24444432221 12222 2111
Q ss_pred -------ceeEecCCCCcEEEEEEC-------CCCCEEEEEeeCCCCCCcEEEEeCCCC-eeE--EEecCccCcceEEEE
Q 001168 533 -------SRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVVQ 595 (1134)
Q Consensus 533 -------~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~~ 595 (1134)
....+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..++
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~ 318 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV 318 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEE
Confidence 112221223457788884 4665555543 3556888887643 322 223211123678899
Q ss_pred EeCCCCEEEEEe
Q 001168 596 FDTTRNRFLAAG 607 (1134)
Q Consensus 596 ~~~~~~~l~~~~ 607 (1134)
+.|||..+++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999997666653
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.85 E-value=0.46 Score=53.55 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=62.8
Q ss_pred CceEEEEeccCCCEEEEEeC-CeEEEEEcCCCeE--EEEecC------CCCceEEEEEcCC---CCcEEEEEeC------
Q 001168 841 ESAACIALSKNDSYVMSASG-GKVSLFNMMTFKV--MTMFMS------PPPAATFLAFHPQ---DNNIIAIGME------ 902 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sd-g~i~vwd~~~~~~--~~~~~~------~~~~i~~l~~s~~---~~~~lasg~~------ 902 (1134)
...+.++|.|||+++++-.. +.|++++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999998887665 4798888765543 223321 1345779999994 3444443332
Q ss_pred ------CCcEEEEEcCCc-------eEEE-EecC-cccceEEEEEecCCCEEEEEcC
Q 001168 903 ------DSSVQIYNVRVD-------EVKT-KLKG-HQNRITGLAFSPTLNALVSSGA 944 (1134)
Q Consensus 903 ------dg~i~iwd~~~~-------~~~~-~l~~-h~~~i~~l~~s~d~~~l~s~~~ 944 (1134)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555321 1121 1221 1123678999999998887664
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.68 E-value=0.57 Score=50.87 Aligned_cols=236 Identities=9% Similarity=-0.018 Sum_probs=118.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC--ccccee-EeecccCCeeEEEEecC---CCcEEEEEEcC------CC
Q 001168 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHL-EIDAHVGGVNDIAFAHP---NKQLCIVTCGD------DK 477 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~-~~~~h~~~v~~l~~s~d---~~~~~l~sg~~------d~ 477 (1134)
....++|.|||+.|.++...|.|++++.++.. .+.... ...........++|+|+ +..+++..... ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 46789999999944455678999999854321 111010 11122345789999996 55433332221 23
Q ss_pred cEEEEECCCC--e--eeEE----ec---CCCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEccCCC-
Q 001168 478 MIKVWDVVAG--R--KQYT----FE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYLG- 532 (1134)
Q Consensus 478 ~i~iwd~~~~--~--~~~~----~~---~h~~~v~~i~~~~~~~~~~l~s~~~-------------d~~i~~wd~~~~~- 532 (1134)
.|..|++..+ . .... +. .....-..++|.|+ |.+.++.+. .|.|.-++.+..-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK--GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS--SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC--CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 5666766533 1 1111 11 11112356888764 455555433 2456666665320
Q ss_pred -----------ceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeC--------CCC---------------
Q 001168 533 -----------SRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE--------SEG--------------- 577 (1134)
Q Consensus 533 -----------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~--------~~~--------------- 577 (1134)
....+.........++|.| +|++.++ -...++...|.+... ..+
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1111222223578899999 5554443 322111112222110 000
Q ss_pred ------eeEEEecCccCcceEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccC
Q 001168 578 ------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKE 643 (1134)
Q Consensus 578 ------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d 643 (1134)
.++..+..+. ....+.|.. +|.++++.-..+.|...+++.++.......- .....+..+++.||
T Consensus 256 ~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0111122111 355677753 4666666667788888888766544332211 11236789999999
Q ss_pred CCEEEEE
Q 001168 644 GSLLAVT 650 (1134)
Q Consensus 644 ~~~l~~~ 650 (1134)
|.+.++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9866643
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.64 E-value=0.12 Score=55.31 Aligned_cols=229 Identities=10% Similarity=-0.018 Sum_probs=112.8
Q ss_pred EEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcC-----C------CcEEEEECCCCeeeE
Q 001168 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQY 491 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-----d------~~i~iwd~~~~~~~~ 491 (1134)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||+.+++...
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44454 568899998865321 22222222333333445565 5666663 1 127788988876432
Q ss_pred EecCCCCCe--EEEEeeccCCccEEEEEecC--------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001168 492 TFEGHEAPV--YSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 492 ~~~~h~~~v--~~i~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+.....+- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 21111111 112211 23666666643 35888888765433221111111111112245566666664
Q ss_pred CC--CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCCCCCCC
Q 001168 562 SK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 562 ~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
+. .....+.+||+.+.+....-.......-.+++. -+++.++.||.++ .+.+||+.+.+-...-..... .
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 234 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--R 234 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--C
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 21 113468999998876543222111111112222 2566777777543 588999988765443322211 1
Q ss_pred cceEEEccCCCEEEEEeCC--------------CcEEEEECCCc
Q 001168 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~d--------------g~i~iw~~~~~ 664 (1134)
....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 235 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 1222223366777777763 24677887765
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.61 E-value=0.099 Score=55.69 Aligned_cols=192 Identities=8% Similarity=0.015 Sum_probs=95.3
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCC-----cEEEEECCCCe
Q 001168 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGR 488 (1134)
Q Consensus 419 dg~~las~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-----~i~iwd~~~~~ 488 (1134)
+++.++.|+.+ ..+.+||..+.+-.. ...+......-..+. -+++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAV--LNGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEE--ECCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777777754 358889987754221 111111111111222 2454 555665443 57889988776
Q ss_pred eeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEccCCCceeEecCCC--CcEEEEEECCCCCEEE
Q 001168 489 KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLF 557 (1134)
Q Consensus 489 ~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~ 557 (1134)
.... +....... +++.. ++.+++.|+.+ ..+.+||+.+..-...-.... .....+.+ +++.++
T Consensus 136 W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 209 (302)
T 2xn4_A 136 WFHVAPMNTRRSSV-GVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYA 209 (302)
T ss_dssp EEEECCCSSCCBSC-EEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred EeecCCCCCcccCc-eEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEE
Confidence 4432 11111111 22221 23666666543 347888887654333211111 11222222 566667
Q ss_pred EEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCee
Q 001168 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1134)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1134)
.++.+... ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 76653221 3469999998876543322111101111222 256666777654 3478888877653
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.47 E-value=0.14 Score=54.60 Aligned_cols=233 Identities=7% Similarity=-0.027 Sum_probs=116.2
Q ss_pred CCCCEEEEEeC----CCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcC----C-----CcEEEEEC
Q 001168 418 PDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWDV 484 (1134)
Q Consensus 418 pdg~~las~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~----d-----~~i~iwd~ 484 (1134)
-++..++.|+. -..+.+||..+.+-.. ...+......- +++ ..++. +++.|+. + ..+.++|+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 35667777763 2368889987754221 11111111111 222 22454 5666665 2 46889998
Q ss_pred CCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCceeEecCC--CCcEEEEEECCCCCE
Q 001168 485 VAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTR 555 (1134)
Q Consensus 485 ~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~ 555 (1134)
.+.+.... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-... .....++.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 88764321 1111111122222 33666666643 35788888765433221111 112222233 5666
Q ss_pred EEEEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCC
Q 001168 556 LFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 556 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1134)
++.++.+... ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 6676653322 35689999988765432211111111122222 56666667654 56999999887644332222
Q ss_pred CCCCCcceEEEccCCCEEEEEeCC-----CcEEEEECCCc
Q 001168 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~d-----g~i~iw~~~~~ 664 (1134)
... .-.+++ .-++++++.|+.+ ..+.+||..+.
T Consensus 251 ~~r-~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 HRR-SALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SCC-BSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCc-cceEEE-EECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111 112222 2367777777753 45788888765
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.47 E-value=0.065 Score=57.94 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=102.3
Q ss_pred EEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCC----CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce------
Q 001168 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 915 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~------ 915 (1134)
.....+|.-++++.++.||.-++......+.+... -..|..+..+| +|.+||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 45567888898888999999998754444444432 23688999999 999999775 5589998887321
Q ss_pred ------EEEEecC------cccceEEEEEecC---CCEEEEEcCCCcEEEEeCCCcccccceeeecCC---CCCCCCcCc
Q 001168 916 ------VKTKLKG------HQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---GRQSPLVGE 977 (1134)
Q Consensus 916 ------~~~~l~~------h~~~i~~l~~s~d---~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~v 977 (1134)
..+.+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... +.......+
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 1122221 2567999999995 56899999999999999987332111 121111 111222578
Q ss_pred eEEEEcCCCcEEEE-E--ECCeEEEE
Q 001168 978 TKVQFHNDQTHLLV-V--HESQISVY 1000 (1134)
Q Consensus 978 ~~~~fspdg~~l~~-~--~d~~v~vw 1000 (1134)
.+++|.++|-.|.+ . .+|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 89999998876666 3 45677644
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.41 E-value=0.18 Score=62.99 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=125.0
Q ss_pred EEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecC
Q 001168 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~ 922 (1134)
-+.-.+|..+.+|.-...++.|||+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++... .+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred hhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 345678888888887788999999998777766653 34566666653 34555553 458999999642 44444544
Q ss_pred c----ccceEEEEEecCCCEEEEEc-------CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEE
Q 001168 923 H----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 923 h----~~~i~~l~~s~d~~~l~s~~-------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
| ...|..-..+++.++++..| -.|.+.+|.++.+.. +...||........--...+....++.
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhHhhhheeccCCCCCCceEEEE
Confidence 4 34577788899999888654 347888998887542 223344321100000000111222222
Q ss_pred EE----CCeEEEEeC-CC---c------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001168 992 VH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~~----d~~v~vwd~-~~---~------~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+. .+.+.|-++ .. . ....+.+...-..--.++..|+.-..+...+.-|.|.++|+.||..+..-+
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 32 367777777 21 1 111112222223444577788887888888899999999999999987654
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.32 E-value=0.4 Score=51.04 Aligned_cols=231 Identities=13% Similarity=0.115 Sum_probs=118.5
Q ss_pred EeccCCCEEEEEe-C----CeEEEEEcCCCeEEEE--ecCCCCceEEEEEcCCCCcEEEEEeC----C-----CcEEEEE
Q 001168 847 ALSKNDSYVMSAS-G----GKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGME----D-----SSVQIYN 910 (1134)
Q Consensus 847 ~~s~dg~~la~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg~~----d-----g~i~iwd 910 (1134)
+..-++..++.|+ + ..+.+||..+.+-... +......-..+.+ ++.+++.|+. + ..+.+||
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEEC
Confidence 3344667777775 2 4689999987653322 1111111222222 5678888776 2 4688999
Q ss_pred cCCceEE--EEecCcccceEEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEc
Q 001168 911 VRVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 911 ~~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
..+.+-. ..+......-..+. -++++++.||.+ ..+.+||..+.+-.....+ +... .....+.+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r----~~~~~~~~- 167 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRR----IGVGVAVL- 167 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCC----BSCEEEEE-
T ss_pred CCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Cccc----cceEEEEE-
Confidence 8876422 22221111122222 267777777644 3588899887653221111 1111 11222222
Q ss_pred CCCcEEEEE-EC-----CeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCccee
Q 001168 984 NDQTHLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFR 1052 (1134)
Q Consensus 984 pdg~~l~~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-----g~I~vwd~~~~~~~ 1052 (1134)
+++.++.+ .+ ..+.+||+.................-.++. -++++++.|+.+ ..+.+||+.+.+-.
T Consensus 168 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 168 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred -CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 66666664 22 468999985444333322111011122222 377778888765 45899999886543
Q ss_pred eecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC-----cEEEEecCCCc
Q 001168 1053 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAE 1103 (1134)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~~~~~~ 1103 (1134)
..-. .+.. . ....++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 245 ~~~~----~p~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 245 FVAP----MKHR---R-SALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ECCC----CSSC---C-BSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCC----CCCC---c-cceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 2211 1111 1 11112222 567888888653 57788876544
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.27 E-value=0.54 Score=50.22 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=113.3
Q ss_pred CCeEEEEEcCCCeEE-EEecCCCCceEEEEEcCCCCcEEEEEeC-----C------CcEEEEEcCCceE--EEEecCccc
Q 001168 860 GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGME-----D------SSVQIYNVRVDEV--KTKLKGHQN 925 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~lasg~~-----d------g~i~iwd~~~~~~--~~~l~~h~~ 925 (1134)
...+.+||..+.+=. ..+..........+... ++.+++.|+. . ..+.+||..+++- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 367999999887633 22322223444444445 7788888884 1 1278888887642 222221111
Q ss_pred ceEEEEEecCCCEEEEEcCC--------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEEC---
Q 001168 926 RITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--- 994 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D--------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--- 994 (1134)
.-..+. -++++++.||.+ ..+.+||..+.+-.....+ +... ....+..-+++.++.++.
T Consensus 91 ~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVV------YGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC--SSCC------BSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC--CCcc------cceeEEEECCEEEEEeCCCCC
Confidence 111222 266777777742 4588999987653221111 1111 112222346666666432
Q ss_pred ----CeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCcceeeecCCcccccccc
Q 001168 995 ----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLRFRCRIGPSAYIPTYA 1065 (1134)
Q Consensus 995 ----~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~ 1065 (1134)
..+.+||............. .......+..-++++++.|+.++ .+.+||+.+.+-...-. .+..
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~- 233 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE- 233 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC-
T ss_pred CcccceEEEEeCCCCeEEECCCCC--CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc-
Confidence 46899998544433332221 11111112233778888888765 48889998864433211 1111
Q ss_pred cCCCCccEEEeecCCCCCEEEEEeCCC--------------cEEEEecCCCc
Q 001168 1066 VSNTAHPLVIAPHPSEPNQIALGMSDG--------------AVHVVEPSDAE 1103 (1134)
Q Consensus 1066 ~~~~~~~~~~~~~~~d~~~l~s~~~Dg--------------~v~vW~~~~~~ 1103 (1134)
. ....++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 234 --r-~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 --R-SSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp --C-BSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred --c-cceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 1 11112222 557888888643 36677776544
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.23 E-value=0.38 Score=51.47 Aligned_cols=230 Identities=13% Similarity=0.018 Sum_probs=111.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcC----CC-------cEEEEECCCCeee
Q 001168 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQ 490 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~----d~-------~i~iwd~~~~~~~ 490 (1134)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37889988765322 12221112222333344555 6666762 11 2778898877643
Q ss_pred EE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001168 491 YT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 491 ~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
.. +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-..........+...+++.++.++.
T Consensus 92 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 21 1111111112222 23677777754 34777887765433322212111111112246666666664
Q ss_pred CCC--CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCCC
Q 001168 562 SKE--GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 562 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
+.+ ....+.+||+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+-...-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 221 13459999998876544322111111112222 256666667633 3577899887664433222111 1
Q ss_pred cceEEEccCCCEEEEEeCC--------------CcEEEEECCCc
Q 001168 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~d--------------g~i~iw~~~~~ 664 (1134)
....+...++++++.|+.+ ..+.+||+.+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1222223456777777653 35778887765
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.22 E-value=1.7 Score=46.51 Aligned_cols=100 Identities=9% Similarity=0.079 Sum_probs=58.5
Q ss_pred ceEEEEeccCCCEEEEEe--CCeEEEEEcCCCe------------------EEEEecCCCCceEEEEEcCCCCcEEEEEe
Q 001168 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------------------VMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~------------------~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
....++|+|+|.+.++-. ++.=.|--+..+. .+..+..+......++|.. +.++...-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 456899999988766543 3322222222221 1222222223567788874 55665555
Q ss_pred CCCcEEEEEcCCceE----EEEecCcccceEEEEEecCCCEEEEEc
Q 001168 902 EDSSVQIYNVRVDEV----KTKLKGHQNRITGLAFSPTLNALVSSG 943 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~----~~~l~~h~~~i~~l~~s~d~~~l~s~~ 943 (1134)
..+.|....+..+.. ...+.+...++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666776666665432 223445557899999999998777654
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.13 E-value=0.7 Score=51.58 Aligned_cols=246 Identities=11% Similarity=0.106 Sum_probs=134.6
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCCeEEEEecC-CCCceEEEEEc--CCCCcEEEEEeC-------CCcE---------EE
Q 001168 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFH--PQDNNIIAIGME-------DSSV---------QI 908 (1134)
Q Consensus 850 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s--~~~~~~lasg~~-------dg~i---------~i 908 (1134)
.||+||..-. +..|...+++..++-..+.- ....+..+.|- | ...+++.++. ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3889999987 68899999999988766653 34568888886 6 6667776653 3331 11
Q ss_pred E---EcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC---------------CcEEEEeCCC-------cc--ccc-
Q 001168 909 Y---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---------------AQLCMWSIDK-------WE--KLK- 960 (1134)
Q Consensus 909 w---d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------~~i~iWd~~~-------~~--~~~- 960 (1134)
| |..+-+....+.- .+....+...++|.+.++.+.+ ..+.++++.. |+ .+.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 1111111111110 1122234456677777765532 1255665432 11 111
Q ss_pred --ceeeecCC----CCC-----CCCcCceEEEEcCCCcEEEEEE--CCeEEEEeCC-------Ccc---ccccCCCCCCC
Q 001168 961 --SRFIQAPA----GRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDSK-------LEC---SRSWSPKDALP 1017 (1134)
Q Consensus 961 --~~~~~~~~----~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~v~vwd~~-------~~~---~~~~~~~~~h~ 1017 (1134)
...+.... +.. ........+.++|||++++++. +.++.|+|.+ .+. ...........
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 01111111 000 0013457889999999999964 6789999983 111 01111111124
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCc----------ceeeecCCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001168 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETL----------RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1018 ~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
-.-...+|.++|.-..+-.-|..|.-|++.+. ..+.++..+ |.|.+.+.... =.-.| ||++|++
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~g----et~~~-dGk~lv~ 451 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLC----ETNEA-DGKWLVA 451 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTT----TSTTC-CSCEEEE
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCC----ccCCC-CccEEEE
Confidence 56788999999955556668999999999864 344445443 23332111111 11134 7888888
Q ss_pred EeC---CC----------cEEEEecCCCc
Q 001168 1088 GMS---DG----------AVHVVEPSDAE 1103 (1134)
Q Consensus 1088 ~~~---Dg----------~v~vW~~~~~~ 1103 (1134)
.+. |. +-.+.|++-.+
T Consensus 452 lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 452 LSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred ecccccccCcCCCCCCCCcceeEecCCCc
Confidence 764 32 34667776544
No 336
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.05 E-value=0.64 Score=49.97 Aligned_cols=188 Identities=7% Similarity=0.076 Sum_probs=107.2
Q ss_pred CeeEEEEecCCCcEEEEEE------------cCCCcEEEEECCC--Ceee-EEecC-----CCCCeEEEEeeccCCcc-E
Q 001168 455 GVNDIAFAHPNKQLCIVTC------------GDDKMIKVWDVVA--GRKQ-YTFEG-----HEAPVYSVCPHHKESIQ-F 513 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg------------~~d~~i~iwd~~~--~~~~-~~~~~-----h~~~v~~i~~~~~~~~~-~ 513 (1134)
...+++..|+|. .++++ ..+|.|.++|+.+ ++.. ..+.+ .......+.+.++.++. +
T Consensus 51 G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 345666777765 44444 2689999999874 2221 12332 23467777776643433 3
Q ss_pred EEEE-ec--CCeEEEEEccCCCcee----EecC-CCCcEEEEEECCCCCEEEEEee---C----------CCCCCcEEEE
Q 001168 514 IFST-AI--DGKIKAWLYDYLGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGT---S----------KEGESHLVEW 572 (1134)
Q Consensus 514 l~s~-~~--d~~i~~wd~~~~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~---~----------~~~~~~i~~w 572 (1134)
|+.+ .. +.+|.+|+++...... .+.. .-...+.+++.++|.+.++... + ....+.|+.+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 4444 33 5678888887654332 2222 1236789999999987776531 0 1124567777
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCC-CeeE--EEEeCCCCCCCcceEEEcc-CCCEE
Q 001168 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN-MNML--TTVDADGGLPASPRLRFNK-EGSLL 647 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~s~-d~~~l 647 (1134)
|.. +......+.. .-+.++|+||++.++.+. ..+.|+.|++.. ++.. ..+... ...-.+++.+ +|.+.
T Consensus 209 d~~--~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 209 SPN--DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDLW 281 (355)
T ss_dssp CTT--CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCEE
T ss_pred ECC--eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCcEE
Confidence 653 3222222211 467899999998887765 678999999863 3321 223211 2335566666 46655
Q ss_pred EEEe
Q 001168 648 AVTT 651 (1134)
Q Consensus 648 ~~~~ 651 (1134)
+++.
T Consensus 282 va~~ 285 (355)
T 3sre_A 282 VGCH 285 (355)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5443
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.00 E-value=2.7 Score=47.02 Aligned_cols=113 Identities=19% Similarity=0.111 Sum_probs=76.8
Q ss_pred ceEEEEeccCCCEEEEEe--CCeEEEEEcCCC------eE-------EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcE
Q 001168 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTF------KV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~------~~-------~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i 906 (1134)
..-.+.++|||+++++++ +.++.|+|+... +. ..... -.-.....+|.+ +|....+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 344688999999999998 789999998742 11 22222 233467899999 78666667789999
Q ss_pred EEEEcCCc----------eEEEEecCcccceEEEEE------ecCCCEEEEEc---CCCc----------EEEEeCCCcc
Q 001168 907 QIYNVRVD----------EVKTKLKGHQNRITGLAF------SPTLNALVSSG---ADAQ----------LCMWSIDKWE 957 (1134)
Q Consensus 907 ~iwd~~~~----------~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~---~D~~----------i~iWd~~~~~ 957 (1134)
.-|++... ..+..+.-|-.+ -.+.- .|||++|++.. .|.. -.+.|++..+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99999763 456666655433 22322 57899999874 4543 3667775544
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.96 E-value=2 Score=45.15 Aligned_cols=175 Identities=12% Similarity=0.080 Sum_probs=105.3
Q ss_pred EEEeccCCCEEEEEe--C-------------CeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe--C--CCc
Q 001168 845 CIALSKNDSYVMSAS--G-------------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--E--DSS 905 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~--~--dg~ 905 (1134)
+--++++|.+|+... + ..|+..+++..+...... .. +..|++ ++++|+... . +..
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999998876 2 257777777654322222 11 236777 677777665 3 345
Q ss_pred EEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcC
Q 001168 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 906 i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
|+.-++... ....+..+.. .+++++++.|.-.+. ..+|..-++..+... .+. .+ .....++|
T Consensus 131 Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l~--~~-------~~~~~~~P 193 (302)
T 3s25_A 131 LYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LFY--DC-------NCYKPVVL 193 (302)
T ss_dssp EEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EEE--CS-------CEEEEEEE
T ss_pred EEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EEe--CC-------Cccceeee
Confidence 555566533 3444544432 456888988886664 577888888775532 121 11 12234679
Q ss_pred CCcEEEEEE--C-CeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCc
Q 001168 985 DQTHLLVVH--E-SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETL 1049 (1134)
Q Consensus 985 dg~~l~~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~--~dg~I~vwd~~~~ 1049 (1134)
++++|+-.. + ..|..-++.+.....+.. ..+ ..|+|++++|+-++ ..+.|..-+++..
T Consensus 194 ~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 194 DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEECSSSCCCEECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 999998753 2 367777776665544432 233 34888999887653 2356777777643
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.96 E-value=0.77 Score=57.55 Aligned_cols=99 Identities=5% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC
Q 001168 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..+|.|.|+..+..+.+-.... .+.-++|..+.++.-. ..++.|+|+++...+....... .|.--.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCcccccccc----hhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCC-C
Confidence 4478899988866543322221 2344788887766653 7899999999988888776543 3444445433 3
Q ss_pred EEEEEeCCCcEEEEECCCchhhhhhccCC
Q 001168 646 LLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1134)
.|+..+. ..|.-|++.....+.+.+..|
T Consensus 118 ~l~lVT~-~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred eeEEEcC-CeEEEeccCCCCccHHHHhcc
Confidence 4555544 489999997544455555444
No 340
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.79 E-value=0.0087 Score=47.72 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCccH--HHHHHHhhcccHHHHHHHhcC
Q 001168 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KHFEDQVQAGEWDEVERYLCG 59 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~ 59 (1134)
.+|+.+-|++||..+||.+++.+|.+|.|+..+. ..--.-.++-+|..++++=++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5689999999999999999999999999988752 222345777888888775443
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.77 E-value=0.12 Score=50.35 Aligned_cols=144 Identities=13% Similarity=-0.034 Sum_probs=83.3
Q ss_pred ceEEEEeccCCCEEEEEeCCeEEEEEcCCCeE------EEEec-CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc
Q 001168 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV------MTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~------~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
.++.++|+|||.+.++ .+|.+.-.+..+... -..+- .--..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 888776666544211 01110 0001137899999 8888877 5699988875432
Q ss_pred eE-------EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccc----ceeeecCCCCCCCCcCceEEEEc
Q 001168 915 EV-------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----SRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 915 ~~-------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.. ...-.+-=..+..|.|.|+|.+.+.. |+.++-+...++.... ...+..... ..-+.+.|.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~f~ 190 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLFFS 190 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEEEC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEEEC
Confidence 11 11111111457899999999877766 7765433332211100 011111111 123567799
Q ss_pred CCCcEEEEEECCeE
Q 001168 984 NDQTHLLVVHESQI 997 (1134)
Q Consensus 984 pdg~~l~~~~d~~v 997 (1134)
++|...++. ++.+
T Consensus 191 ~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ-GGKF 203 (236)
T ss_dssp TTSCEEEEE-TTEE
T ss_pred CCCcEEEEe-CCeE
Confidence 999988887 6643
No 342
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.68 E-value=0.61 Score=50.49 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=88.1
Q ss_pred CCeEEEEEccCCCceeEecCC----CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe------------eEEEe
Q 001168 520 DGKIKAWLYDYLGSRVDYDAP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA------------IKRTY 583 (1134)
Q Consensus 520 d~~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~------------~~~~~ 583 (1134)
++.||.-++.....-..+... -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 356666666543333333332 23577899999999999986 5668888876321 12233
Q ss_pred cCc-----cCcceEEEEEeCCC---CEEEEEeCCCeEEEEECCCCe--eEEEEe-------CCCCCCCcceEEEccCCCE
Q 001168 584 SGF-----RKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMN--MLTTVD-------ADGGLPASPRLRFNKEGSL 646 (1134)
Q Consensus 584 ~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~~~~s~d~~~ 646 (1134)
... ...+|..+.|+|-+ ..|++-..|+.|++||+.... +. .+. .......|.+++|..++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 322 12368999999965 689999999999999998622 22 222 2222356889999998877
Q ss_pred EEEEe--CCCcEEEE
Q 001168 647 LAVTT--SDNGIKIL 659 (1134)
Q Consensus 647 l~~~~--~dg~i~iw 659 (1134)
|...+ ..|.|+-.
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 77755 67777654
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.66 E-value=0.47 Score=51.80 Aligned_cols=231 Identities=13% Similarity=0.086 Sum_probs=111.6
Q ss_pred CCCEEEEEe--CCeEEEEEcCC--C--eEEEEec-CCCCceEEEEEcCCCCcEEEEEeC-C---------CcEEEEEcCC
Q 001168 851 NDSYVMSAS--GGKVSLFNMMT--F--KVMTMFM-SPPPAATFLAFHPQDNNIIAIGME-D---------SSVQIYNVRV 913 (1134)
Q Consensus 851 dg~~la~~s--dg~i~vwd~~~--~--~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~-d---------g~i~iwd~~~ 913 (1134)
++++++.|+ ...+.+||..+ . +.+..+. .....-.++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 777777776 46799999864 2 2222222 11112223333 5678888876 2 4688999887
Q ss_pred ceE--EEEecCcccceEEEEEecCCCEEEEEcCC---------------------------------------CcEEEEe
Q 001168 914 DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD---------------------------------------AQLCMWS 952 (1134)
Q Consensus 914 ~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------------------------------~~i~iWd 952 (1134)
.+= +..+.. .......+...++++++.||.+ ..+.+||
T Consensus 96 ~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCCS-SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCCC-cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 642 222220 1111111222578888888865 4688999
Q ss_pred CCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEE-------CCeEEEEeC--CCccccccCCCCCCCCCeEEE
Q 001168 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-------ESQISVYDS--KLECSRSWSPKDALPAPISSA 1023 (1134)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-------d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v 1023 (1134)
..+.+-.... ..+.... .-..++ .-+++.++.++ ...+.+||+ .....................
T Consensus 175 ~~~~~W~~~~--~~p~~~~----~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSYAG--ESPWYGT----AGAAVV-NKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEEEE--ECSSCCC----BSCEEE-EETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEECC--CCCCCCc----ccccEE-EECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 8876533221 1111110 101222 23566666632 235777876 333333322211001111222
Q ss_pred EEccCCCEEEEEecC----------------------CcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCC
Q 001168 1024 IYSCDGLLVYAGFCD----------------------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1081 (1134)
Q Consensus 1024 ~~s~dg~~l~~~~~d----------------------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1081 (1134)
+...++++++.|+.+ ..+.+||+.+.+-...-. .|.. . ....++.+ +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~---r-~~~~~~~~---~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQG---R-AYGVSLPW---N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSC---C-BSSEEEEE---T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCC---c-ccceeEEe---C
Confidence 334577777777743 257789988764332111 1111 1 11122333 5
Q ss_pred CCEEEEEeCCC------cEEEEecCCCc
Q 001168 1082 PNQIALGMSDG------AVHVVEPSDAE 1103 (1134)
Q Consensus 1082 ~~~l~s~~~Dg------~v~vW~~~~~~ 1103 (1134)
+.+++.|+.++ .|.+.++.+.+
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 68889999764 34445666544
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.54 E-value=0.79 Score=48.93 Aligned_cols=200 Identities=9% Similarity=-0.016 Sum_probs=95.0
Q ss_pred EEECCCCCEEEEEeC----CC-------eEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCC------
Q 001168 414 CVWGPDGLMLGVAFS----KH-------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------ 476 (1134)
Q Consensus 414 i~~spdg~~las~~~----dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d------ 476 (1134)
.+...++..++.|+. ++ .+.+||..+.+-.. ...+....... +++. -+++ +++.|+.+
T Consensus 51 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--iyv~GG~~~~~~~~ 125 (318)
T 2woz_A 51 SIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLF-GLGE-VDDK--IYVVAGKDLQTEAS 125 (318)
T ss_dssp EEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSC-EEEE-ETTE--EEEEEEEBTTTCCE
T ss_pred EEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCcccccc-ceEE-ECCE--EEEEcCccCCCCcc
Confidence 334567888888873 12 27778877653221 11111111111 1222 2444 55555543
Q ss_pred -CcEEEEECCCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEecCCCC--cEE
Q 001168 477 -KMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGN--WCT 545 (1134)
Q Consensus 477 -~~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~--~v~ 545 (1134)
..+.++|+.+.+.... +......-. ++. . ++.+++.|+.+ ..+.+||+.+.+-...-..... ...
T Consensus 126 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 201 (318)
T 2woz_A 126 LDSVLCYDPVAAKWSEVKNLPIKVYGHN-VIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFG 201 (318)
T ss_dssp EEEEEEEETTTTEEEEECCCSSCEESCE-EEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred cceEEEEeCCCCCEeECCCCCCcccccE-EEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccce
Confidence 3578899887764432 111111111 111 1 33666666542 3588888876543332211111 112
Q ss_pred EEEECCCCCEEEEEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC--------------C
Q 001168 546 MMAYSADGTRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------F 610 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g 610 (1134)
++. -+++.++.++.+.++ ...+.+||+.+.+....-.......-.++. ..++..++.||.+ .
T Consensus 202 ~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 202 VAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceee
Confidence 222 256667777653221 235788998877644322111110111222 2245666666643 3
Q ss_pred eEEEEECCCCeeEEE
Q 001168 611 QIKFWDMDNMNMLTT 625 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~ 625 (1134)
.+.+||+.+.+-...
T Consensus 279 ~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 279 DIWKYEDDKKEWAGM 293 (318)
T ss_dssp CEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCEehhh
Confidence 577788777654443
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.28 E-value=0.57 Score=52.80 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=61.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE--EEEecC------cccceEEEEEecC----CCEEEEEcC----
Q 001168 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKG------HQNRITGLAFSPT----LNALVSSGA---- 944 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~--~~~l~~------h~~~i~~l~~s~d----~~~l~s~~~---- 944 (1134)
-.....|+|.| +|+++++-...+.|++++..+++. +..+.. .......|+|+|| +.+.++-+.
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 888777544335798888655543 222321 2456779999995 444444332
Q ss_pred --------CCcEEEEeCCCcc-cc-c-ceeeecCCCCCCCCcCceEEEEcCCCcEEEEE
Q 001168 945 --------DAQLCMWSIDKWE-KL-K-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 945 --------D~~i~iWd~~~~~-~~-~-~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
...|.-+++..+. .+ . ..++...... .......++|.|||+++++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS--KDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC--SSCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC--CCCCCCeEeECCCCeEEEEE
Confidence 1345555554321 11 1 1122211111 11346899999999988874
No 346
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.15 E-value=4.2 Score=43.43 Aligned_cols=236 Identities=14% Similarity=0.073 Sum_probs=118.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC---CCE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 422 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd---g~~ 422 (1134)
-...+.++|.|||+ ++++-...|.|++++..+++.... . . . ..+..........|+|+|| +.+
T Consensus 31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v---~--~-------~-~~v~~~g~~GllGia~~Pdf~~~g~ 96 (347)
T 3das_A 31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTEL---G--E-------V-PGVSPSGEGGLLGIALSPDYASDHM 96 (347)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE---E--E-------C-TTCCCBTTBSEEEEEECTTHHHHCE
T ss_pred CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeee---c--c-------c-CceeecCCCCceeeEeccccccCCE
Confidence 45789999999997 676654489999998665543110 0 0 0 0012234567899999996 344
Q ss_pred EEEE---eCCCeEEEEEcCCCC----cc---ccee-Eee-cccCCeeEEEEecCCCcEEEEEEc------------CCCc
Q 001168 423 LGVA---FSKHIVHLYTYNPTG----EL---RQHL-EID-AHVGGVNDIAFAHPNKQLCIVTCG------------DDKM 478 (1134)
Q Consensus 423 las~---~~dg~i~iwd~~~~~----~~---~~~~-~~~-~h~~~v~~l~~s~d~~~~~l~sg~------------~d~~ 478 (1134)
|... ..++.|.-|.+..+. .+ +.+. .+. +.......|+|.|||. +++.+|+ .-+.
T Consensus 97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTC
T ss_pred EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCE
Confidence 4433 245567777766521 11 1111 121 1112346799999997 2444442 1244
Q ss_pred EEEEECCCCe----------eeEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEccCCCc--------------
Q 001168 479 IKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGS-------------- 533 (1134)
Q Consensus 479 i~iwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~-------------- 533 (1134)
|.-.+.. |+ .+.. .+|. ....++|++. |.+.++- +.|+.-.+--+..+..
T Consensus 176 IlRi~~d-G~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~--G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~ 250 (347)
T 3das_A 176 ILRMTPD-GEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDK--QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSG 250 (347)
T ss_dssp EEEECTT-SSBCTTCSSTTCCEEE-BCCS-BCCEEEECTT--CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTT
T ss_pred EEEEeCC-CCccCCCCCCCCeEEe-eCCC-CcceEEECCC--CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcc
Confidence 4444432 22 1222 2443 3456788774 3444433 2233222222221110
Q ss_pred ----eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee----EEEecCccCcceEEEEEeCCCCEEEE
Q 001168 534 ----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 534 ----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
...+..+......++|. +|..++... ....|....+..+.. ...+.+.. ..+..++..|||..+++
T Consensus 251 ~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l----~~~~l~~v~~~~~~~~~~~e~~l~~~~-gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 251 FHDPVAQWSTDEASPSGIAYA-EGSVWMAGL----RGERLWRIPLKGTAAAADPQAFLEGEY-GRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp CCCCSEEECTTTCCEEEEEEE-TTEEEEEES----TTCSEEEEEEETTEESSCCEEESTTTS-SCEEEEEEEETTEEEEE
T ss_pred ccCCcEecCCCCCCCcceEEE-cCceeeccc----cCCEEEEEEecCCceecceEEeecCCC-CCccEEEECCCCcEEEE
Confidence 11222122245566775 344444433 234465555554332 22233322 36888889998876665
Q ss_pred Ee
Q 001168 606 AG 607 (1134)
Q Consensus 606 ~~ 607 (1134)
..
T Consensus 325 td 326 (347)
T 3das_A 325 TS 326 (347)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.98 E-value=0.96 Score=49.24 Aligned_cols=147 Identities=10% Similarity=0.010 Sum_probs=66.5
Q ss_pred CcEEEEECCCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEec----CCCCcE
Q 001168 477 KMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYD----APGNWC 544 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~----~~~~~v 544 (1134)
..+.++|+.+.+.... +......-.+++.. ++.+++.|+.+ ..+..||++......... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 5789999988765432 22111110222222 23566666542 356777763332222211 111111
Q ss_pred EEEEECCCCCEEEEEeeCCCCC------------------CcEEEEeCCCCeeEE--EecCccCcceEEEEEeCCCCEEE
Q 001168 545 TMMAYSADGTRLFSCGTSKEGE------------------SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~------------------~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
...+...+++.++.++.+.++. ..+.+||+.+.+... .+..... . ..+...+++.++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~--~~~~~~~~~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-Y--GVSLPWNNSLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-S--SEEEEETTEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-c--ceeEEeCCEEEE
Confidence 1112234566666766422110 247889988765433 2322221 1 122334667777
Q ss_pred EEeCCC------eEEEEECCCCeeEEEEeCC
Q 001168 605 AAGDEF------QIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 605 ~~~~dg------~i~iwd~~~~~~~~~~~~~ 629 (1134)
.||.++ .|.++++++++.+.....+
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 787442 4666688887766655433
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.87 E-value=0.062 Score=52.32 Aligned_cols=147 Identities=14% Similarity=0.049 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE------EEEe--cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001168 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV------KTKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~------~~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
.++.++|+| ++.+.++ .+|.++-.+..+... -..+ .+-.. -.++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8887776 777777666544211 1111 01111 378999999998887 56888877754
Q ss_pred CcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeC-CCcccccc----CCCCCCCCCeEEEEEccCC
Q 001168 955 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSW----SPKDALPAPISSAIYSCDG 1029 (1134)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~----~~~~~h~~~v~~v~~s~dg 1029 (1134)
+.......-....-+. ..-..+..+.|.|+|.+.++. ++.+.-+.. ......-+ .........-.-+.|+++|
T Consensus 116 ~~~~~~Wl~~a~~vg~-~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGS-GGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEEC-SSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEecc-CCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 3221111000000000 000356899999999999998 888543332 11111000 0000112234456688888
Q ss_pred CEEEEEecCC
Q 001168 1030 LLVYAGFCDG 1039 (1134)
Q Consensus 1030 ~~l~~~~~dg 1039 (1134)
.+.++. +|
T Consensus 194 ~l~~v~--~g 201 (236)
T 1tl2_A 194 TLFGVQ--GG 201 (236)
T ss_dssp CEEEEE--TT
T ss_pred cEEEEe--CC
Confidence 866654 66
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.95 Score=48.17 Aligned_cols=115 Identities=8% Similarity=-0.035 Sum_probs=68.8
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcccceeEeecc-cCCeeEEEE--ecCCCcEEEEEE-cCCCcEEEEECCCCeeeEEecC-
Q 001168 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAF--AHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG- 495 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~--s~d~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~- 495 (1134)
..+++++.||.|.-.|..+|+..- .+... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W---~~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIW---SIEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEE---EECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---EecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 367788889988888888886544 22221 112211110 011222 33333 6899999999988865544321
Q ss_pred ---CCCCeEEEEeeccC-------CccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001168 496 ---HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 496 ---h~~~v~~i~~~~~~-------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
...++.. .-.|-- .+..+++|+.+|++...|+.+++.+..+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1222221 100111 3368999999999999999999999887654
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.33 Score=51.73 Aligned_cols=200 Identities=8% Similarity=0.021 Sum_probs=104.5
Q ss_pred cEEEEEeCCCcEEEEEcCCceEEEEecCc-ccceEEEEE--ec-CCCEEEEE-cCCCcEEEEeCCCcccccceeeecCCC
Q 001168 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--SP-TLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h-~~~i~~l~~--s~-d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1134)
.++++++.||.|+-.|..+|+.+..+... ..++....- .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47788999999999999999999998754 122222110 01 23333333 579999999988875432211111110
Q ss_pred CCCCCcCceE---EEE------cCCCcEEEEEECCeEEEEeC-CCccccccCCCCCCC----CCeEEEEEc-----cCCC
Q 001168 970 RQSPLVGETK---VQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1030 (1134)
Q Consensus 970 ~~~~~~~v~~---~~f------spdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~----~~v~~v~~s-----~dg~ 1030 (1134)
. .+... ... +.+|..++.+.++++...|+ +|+.+..+....... ....|.... ..+.
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp T----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred c----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 00100 001 23444444478899999998 777776665432110 001111111 1235
Q ss_pred EEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEE--EeecCCCCCEEEEEeCCCcEEEEecCCCcccc
Q 001168 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV--IAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1031 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
.|+.+..+..+.+.+ .+|+ +.......+.+.. . ..++. ...+ .|+.+ +.++.||.|.-.|..+++..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~-~~~~~~~~~~s-~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---L-DVPLALQNTFS-KDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---T-THHHHTTCSSC-SSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc---c-ccccccccccc-cCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 5564 3322211111110 0 00000 0001 14555 447889999999988888888
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.35 E-value=6 Score=41.48 Aligned_cols=179 Identities=8% Similarity=0.037 Sum_probs=100.0
Q ss_pred EEEEecCCCeEEEEEeCC-------------CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEC
Q 001168 351 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
+--++++|.+|..+...+ +.|+..++..++... +.. . .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~--~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--D--PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--S--CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--C--CccEEE
Confidence 456689999777766544 356666666554221 111 1 123788
Q ss_pred CCCCEEEEEe----CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEE-EEcCCCcEEEEECCCCeeeEE
Q 001168 418 PDGLMLGVAF----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 418 pdg~~las~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+++++|+-.. .+..|...++++.. .. .+..+.. .+|+++++. |+ +......|.+-++..+.....
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~--iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY--FYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE--EEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE--EEEEeCCCceEEEEECCCCCEEEE
Confidence 8999999876 24456666666433 22 3333332 457888984 44 333467899989876654433
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001168 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
+.+ ... ..++|.+ .+|+-....+ .|..-+++..... .+.. ..+ ..|+|++++|+.+... ....|.
T Consensus 183 ~~~---~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~ 249 (302)
T 3s25_A 183 YDC---NCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGG--DNPALC 249 (302)
T ss_dssp ECS---CEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECS--SSCEEE
T ss_pred eCC---Ccc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECC--CCcEEE
Confidence 332 222 2344554 5666555443 4555555544432 2221 223 3478889999866421 235677
Q ss_pred EEeCCC
Q 001168 571 EWNESE 576 (1134)
Q Consensus 571 ~wd~~~ 576 (1134)
.-++..
T Consensus 250 ~~~~DG 255 (302)
T 3s25_A 250 VVKNDG 255 (302)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 777654
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.80 E-value=15 Score=41.12 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=59.4
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcccceeEee---------cccCCeeEEEEecC---CCcEEEEEEc-C
Q 001168 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP---NKQLCIVTCG-D 475 (1134)
Q Consensus 410 ~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d---~~~~~l~sg~-~ 475 (1134)
.-..|+|.|||+ .|+++...|.|++++.+.......+..+. +.......|+|+|+ +..++++-.. .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 56666789999999754321111111111 11456789999996 3333333222 1
Q ss_pred C----------CcEEEEECCC----------CeeeEEec--CCCCCeEEEEeeccCCccEEEEEecC
Q 001168 476 D----------KMIKVWDVVA----------GRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAID 520 (1134)
Q Consensus 476 d----------~~i~iwd~~~----------~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d 520 (1134)
+ ..|.-|.+.. .+.+..+. ........|+|.|+ |.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD--G~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD--GFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT--SCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC--CcEEEEeCCC
Confidence 1 1444466542 12333332 12234577888774 4666665543
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.98 E-value=17 Score=39.83 Aligned_cols=260 Identities=11% Similarity=-0.016 Sum_probs=119.6
Q ss_pred CCceEEEEecc--CCCEEEEEeCC----eEEEEEcCCCeEEEEec------C--------CCCceEEEEEcCCC-CcEEE
Q 001168 840 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFM------S--------PPPAATFLAFHPQD-NNIIA 898 (1134)
Q Consensus 840 ~~~i~~~~~s~--dg~~la~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~~-~~~la 898 (1134)
...|.++++.| ++.+.|.+..| .|... .+.++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45799999998 66666665554 34333 22222211111 1 11257889998733 44555
Q ss_pred EEeCCCcEEEEEcCCc---eEEEEecC----------------cccceEEEEEecC-CCEEEEEcCCCcEEEEeCCCccc
Q 001168 899 IGMEDSSVQIYNVRVD---EVKTKLKG----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 899 sg~~dg~i~iwd~~~~---~~~~~l~~----------------h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
+++..+.|...+ +.| +.+..+.. ....|.+|.+.|. ...|..+..++.|...+- .++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 566666665543 222 22211111 1235788999873 344444443443443322 2221
Q ss_pred ccceeeec-CCC-CCC-----CCcCceEEEEcCC-CcEEEEEECCeEEEEeCCCccccccCCCCCC--CCCeEEEEEccC
Q 001168 959 LKSRFIQA-PAG-RQS-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSCD 1028 (1134)
Q Consensus 959 ~~~~~~~~-~~~-~~~-----~~~~v~~~~fspd-g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h--~~~v~~v~~s~d 1028 (1134)
...+.. ... ... ....+..+++.|+ ...|.++..+.|...+-.++....+...... ...+.+++++|.
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCC
Confidence 001110 000 000 0024788999986 3566666666666555444433333211100 134677888763
Q ss_pred -CCEEEEEec-----------CCcEEEEeCCC-cceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEE
Q 001168 1029 -GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1095 (1134)
Q Consensus 1029 -g~~l~~~~~-----------dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~ 1095 (1134)
...|+++.. ++...+|.-.+ |+.-..+.. -+|....-......+++++|.++..|..++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 344444432 33345555443 333332221 11111000001112466777665667777666654
Q ss_pred EEecCCCccccCC
Q 001168 1096 VVEPSDAELKWGG 1108 (1134)
Q Consensus 1096 vW~~~~~~~~~~~ 1108 (1134)
|.-.++...|..
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 444444455653
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.66 E-value=10 Score=39.28 Aligned_cols=222 Identities=16% Similarity=0.083 Sum_probs=112.5
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEEcCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001168 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
..|..++....-. ++.. ||.|..|-....-.+..-......|..++... ...++. . ||.|+.|-....-.+..-
T Consensus 24 ~~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 3456666544322 2333 78888886543211110011123577777754 234444 5 999999976542111111
Q ss_pred cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEE
Q 001168 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vw 1000 (1134)
..-...|..++...+.... .. |+.|..|-......+.. .... ...+..++...+...+ .. ++.|..|
T Consensus 98 ~~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg~---~~~~-----~~~i~~i~~G~~~~~~-l~-~G~v~~w 164 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTTV---PAEA-----QSGVTALDGGVYTALA-VK-NGGVIAW 164 (282)
T ss_dssp GGGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTSC---CGGG-----GSSEEEEEECSSEEEE-EE-TTEEEEE
T ss_pred cccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCCC---CccC-----CCCeEEEEcccCEEEE-EE-CCEEEEe
Confidence 1113468888876554333 34 89999998765332210 0000 1245555544433322 24 8999999
Q ss_pred eC-CCccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecC
Q 001168 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1079 (1134)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1134)
-. ...++.. ... ....|..++...+... +. .||.|+.|-....-.+.. |... . ..+..++.-.
T Consensus 165 G~n~~gqlg~-p~~--~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~-------p~~~-~--~~v~~i~~G~ 228 (282)
T 3qhy_B 165 GDNYFGQTTV-PAE--AQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTV-------PTEA-L--SGVSAIASGE 228 (282)
T ss_dssp ECCTTSTTSC-CGG--GGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCC-------CGGG-G--SSCCEEEECS
T ss_pred cCCCCCCCCC-cee--cCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCC-------Cccc-C--CCceEEEcCC
Confidence 87 2222211 111 1356888877555443 33 599999998765433221 1100 1 1233444322
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 001168 1080 SEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1080 ~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
...++.. ||+|+.|=.+.
T Consensus 229 --~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 229 --WYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp --SCEEEEE--TTEEEEESTTC
T ss_pred --CEEEEEE--CCEEEEecCCC
Confidence 2344444 99999997654
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.49 E-value=7.4 Score=46.51 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=102.5
Q ss_pred cCCCcEEEEEEcCC----CcEEEEECCCCeeeEEe-c-----CCCCC-eEEEEeeccCCccEEEEEecCC------eEEE
Q 001168 463 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-----GHEAP-VYSVCPHHKESIQFIFSTAIDG------KIKA 525 (1134)
Q Consensus 463 ~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~-~-----~h~~~-v~~i~~~~~~~~~~l~s~~~d~------~i~~ 525 (1134)
.++. +++.||.+ ..+.++|+.+++....- . ..... -.+++.... ++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEE
Confidence 4455 56666643 46888998877644322 1 01111 122222210 336777776543 4778
Q ss_pred EEccCCCceeEecCCCC-cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec-----CccCcceEEEEEeCC
Q 001168 526 WLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTT 599 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 599 (1134)
||..+..-...-..... .-.+++...+++.++.||.+... .+.+||+.+......-. .... ...++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCC
Confidence 88776443322111111 11233333478888888765433 79999999877544321 1111 2233555655
Q ss_pred -CCEEEEEeC--C-----CeEEEEECCCCee-----EEEEeC-CCCCCCcceEEEccCCCEEEEEeC--------CCcEE
Q 001168 600 -RNRFLAAGD--E-----FQIKFWDMDNMNM-----LTTVDA-DGGLPASPRLRFNKEGSLLAVTTS--------DNGIK 657 (1134)
Q Consensus 600 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~--------dg~i~ 657 (1134)
+..++.||. + ..+.+||+.+... ...+.. ......-.+++...++++++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556666664 2 4689999988771 222211 100011123333344777777774 34688
Q ss_pred EEECCCc
Q 001168 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
+||..+.
T Consensus 630 ~yd~~t~ 636 (695)
T 2zwa_A 630 SLDPLSE 636 (695)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8988766
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.11 E-value=30 Score=41.09 Aligned_cols=251 Identities=7% Similarity=0.006 Sum_probs=126.9
Q ss_pred eEEE-EecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEE
Q 001168 350 MSMD-FHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 350 ~~v~-~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+. ++||+++++++=|..| .|+++|+.+++.+.. .|. ....... + .......++|..++..++
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~------~---~~~~~~~~~W~d~~~~~~ 200 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK------L---LEGKFTYPTWINKDTIIF 200 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC------B---CCEETCCEEEEETTEEEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc------c---cccccceeeEECCCEEEE
Confidence 3455 8999997666655444 799999999987642 111 0000000 0 000123447763333333
Q ss_pred EE----------eCCCeEEEEEcCCCCcccceeEeecccCCe-eEEEEecCCCcE---EEEEEc---CCCcEEEEECCC-
Q 001168 425 VA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQL---CIVTCG---DDKMIKVWDVVA- 486 (1134)
Q Consensus 425 s~----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~s~d~~~~---~l~sg~---~d~~i~iwd~~~- 486 (1134)
+. +....|+.|.+-+...- ....+.+....+ .....+++++.. .+++.+ ....+.+.|...
T Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 279 (711)
T 4hvt_A 201 NLVLHKNEITSSLYPNSLYIWKRGESIEK-AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK 279 (711)
T ss_dssp CCCCSTTCBCTTSSBCEEEEEETTSCGGG-CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred EeCCCCCCcCcCCCCCEEEEEECCCChHH-CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence 21 12346888887664322 122344433333 334556777641 344433 224566667553
Q ss_pred -CeeeEEecCCCCCeEEEEeeccCCccEEEEE----------ecCCeEEEEEccCCC-------ceeE-ec-CCCCcEEE
Q 001168 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRVD-YD-APGNWCTM 546 (1134)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------~~d~~i~~wd~~~~~-------~~~~-~~-~~~~~v~~ 546 (1134)
++. ..+...... .+..+. ++.+++.. ...+.|...|+.+.. .... +. .....+..
T Consensus 280 ~~~~-~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 280 NLKL-QKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF 354 (711)
T ss_dssp SCEE-EECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred CCcc-eEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence 432 233211111 111122 22444422 246778889987631 1222 32 23447788
Q ss_pred EEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe-eEEE-ecCccCcceEEEEEeCCCCEEE-EEe---CCCeEEEEECCCC
Q 001168 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFL-AAG---DEFQIKFWDMDNM 620 (1134)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~~---~dg~i~iwd~~~~ 620 (1134)
+.+..+ ..+++... ++...+.++++.++. .... +.....+.+......+++..++ +.+ .-+.++.+|+. +
T Consensus 355 ~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~ 430 (711)
T 4hvt_A 355 ISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-H 430 (711)
T ss_dssp EEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-S
T ss_pred EEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-C
Confidence 888876 44444433 345578899887775 2333 3222222566666667765444 333 45778888887 4
Q ss_pred e
Q 001168 621 N 621 (1134)
Q Consensus 621 ~ 621 (1134)
+
T Consensus 431 ~ 431 (711)
T 4hvt_A 431 E 431 (711)
T ss_dssp C
T ss_pred c
Confidence 4
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.83 E-value=6.6 Score=46.95 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=104.4
Q ss_pred cCCCEEEEEe-C----CeEEEEEcCCCeEEEEe-c-------CCCCceEEEEEcCCCCcEEEEEeCCC------cEEEEE
Q 001168 850 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-------SPPPAATFLAFHPQDNNIIAIGMEDS------SVQIYN 910 (1134)
Q Consensus 850 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~~~~~lasg~~dg------~i~iwd 910 (1134)
.++..++.|+ + ..+.+||..+++-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 35889998876433222 1 1112234455543 567888887543 588899
Q ss_pred cCCce--EEEEecCcccceEEEEEecCCCEEEEEcCCC--cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCC-
Q 001168 911 VRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND- 985 (1134)
Q Consensus 911 ~~~~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd- 985 (1134)
..+.+ .+..+......- +++.-.++++++.||.++ .+.+||..+..-... ........+......+++..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~---~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV---TPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC---CCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc---cCCCCCCCcccceeEEEEeCCC
Confidence 88753 222222111111 222224888888888654 689999988653221 110000000122334566655
Q ss_pred CcEEEEEE---C-----CeEEEEeCCCcc------ccccCCCCCCCCCeEEEEEccCCCEEEEEecC--------CcEEE
Q 001168 986 QTHLLVVH---E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIGV 1043 (1134)
Q Consensus 986 g~~l~~~~---d-----~~v~vwd~~~~~------~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d--------g~I~v 1043 (1134)
++.++.|+ + +.+.+||+.... .............-.+++...++++++.|+.+ ..|.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 66666643 2 458899984333 11111100001111123333447888888753 45999
Q ss_pred EeCCCccee
Q 001168 1044 FDAETLRFR 1052 (1134)
Q Consensus 1044 wd~~~~~~~ 1052 (1134)
||+.+++-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999987654
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.28 E-value=31 Score=38.46 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCC-EEEEEeCCCeEEEEECC
Q 001168 590 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 590 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 618 (1134)
.-..++|.|+|. .++++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456799999996 56666788999999754
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.89 E-value=37 Score=40.35 Aligned_cols=244 Identities=10% Similarity=0.047 Sum_probs=121.1
Q ss_pred EEEE-ECCCCCEEEEEe-----CCCeEEEEEcCCCCcccceeEeecccC------CeeEEEEecCCCcEEEEEE------
Q 001168 412 NRCV-WGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVG------GVNDIAFAHPNKQLCIVTC------ 473 (1134)
Q Consensus 412 ~~i~-~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~l~~s~d~~~~~l~sg------ 473 (1134)
..+. ++||+++++.+- .-..++++|+.+++.+..... ..-+. ....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 3444 889999888752 223799999999865542111 00000 113458874443 34431
Q ss_pred ----cCCCcEEEEECCCCe--eeEEecCCCCCeE-EEEeeccCCcc---EEEEEecC---CeEEEEEccCCCc-eeEecC
Q 001168 474 ----GDDKMIKVWDVVAGR--KQYTFEGHEAPVY-SVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLGS-RVDYDA 539 (1134)
Q Consensus 474 ----~~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~i~~~~~~~~~---~l~s~~~d---~~i~~wd~~~~~~-~~~~~~ 539 (1134)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.|...... ...+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123578899876642 2223444333332 23333333222 35544422 3455556553222 233322
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCC------CCCCcEEEEeCCCCe-------eEEE-ecCccCcceEEEEEeCCCCEEEE
Q 001168 540 PGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
.... .+..+.++.+++....+. -..+.|...++.++. ..+. +....+..+..+.+..+ ..+++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 123344555555332110 135678889887642 1222 44434446778888865 46666
Q ss_pred EeCCCe--EEEEECCCCe-eEEE-EeCCCCCCCcceEEEccCCCE-EEEEeC---CCcEEEEECC
Q 001168 606 AGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGSL-LAVTTS---DNGIKILANS 662 (1134)
Q Consensus 606 ~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~d~~~-l~~~~~---dg~i~iw~~~ 662 (1134)
...++. ++++++.+++ .... +..... ..+.....++++.. +++.++ -+.+..+|..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666664 6677776664 2233 333221 23555556666553 343333 3566666654
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.86 E-value=34 Score=35.16 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=109.7
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCCCCEEEEEe
Q 001168 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.|..++-... +.++. . ||.|..|-......+-. + ......|..++-..+-. ++. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p------~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------P------AATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------C------GGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------C------ccCCCCEEEEEeCCCEE-EEE-E
Confidence 4555554433 23443 4 88888887655433321 0 01123566666654432 333 4
Q ss_pred CCCeEEEEEcCCCCcccceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001168 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
||.|..|-......+.... .-...|..++...+-. ++ -. |+.|+.|-....-.+..-......|..++.-.
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~hs---~a-l~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWAS---YA-LK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTEE---EE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCEE---EE-Ee-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 8999999876543332111 1134677777654432 33 34 89999998654222211111234566665422
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc
Q 001168 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1134)
. ..++ -. ||.|..|-.......-........|..++...+...++ . ++.++.|-......+-. ....
T Consensus 151 ~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~~ 217 (282)
T 3qhy_B 151 Y---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTEA 217 (282)
T ss_dssp S---EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGGG
T ss_pred C---EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Cccc
Confidence 1 3333 33 79999997654333221111123566665544332222 2 56688886543211110 0011
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001168 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
...|..++..... .++ -. ||.|+.|-...
T Consensus 218 ~~~v~~i~~G~~h-~~a-l~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 LSGVSAIASGEWY-SLA-LK-NGKVIAWGSSR 246 (282)
T ss_dssp GSSCCEEEECSSC-EEE-EE-TTEEEEESTTC
T ss_pred CCCceEEEcCCCE-EEE-EE-CCEEEEecCCC
Confidence 1145566655433 222 33 89999997654
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.98 E-value=50 Score=35.47 Aligned_cols=155 Identities=10% Similarity=0.122 Sum_probs=88.6
Q ss_pred eEEEEEcCCC--eEEEEecC------CCCceEEEEEc---CC--C-CcEEEEEe-CCCcEEEEEcCCceEEEEecCcccc
Q 001168 862 KVSLFNMMTF--KVMTMFMS------PPPAATFLAFH---PQ--D-NNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNR 926 (1134)
Q Consensus 862 ~i~vwd~~~~--~~~~~~~~------~~~~i~~l~~s---~~--~-~~~lasg~-~dg~i~iwd~~~~~~~~~l~~h~~~ 926 (1134)
+|.+||+.+. +.++++.- .......+++. |. + +.++..+. ..+-|.|+|+.+++.-+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 5778888888 88777542 23457788887 21 1 34444443 4578999999999876655 321
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCC----CcEEEEEECCeEEEEeC
Q 001168 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND----QTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd----g~~l~~~~d~~v~vwd~ 1002 (1134)
|.|+.....+. +|.-.-|. .++..+++||+ ++.|....-..-++|.+
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V 251 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSV 251 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEE
T ss_pred -----CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEEE
Confidence 34552222221 22211110 35788999998 78888754333344444
Q ss_pred CCcccc------cc--CCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEeCCC
Q 001168 1003 KLECSR------SW--SPKDALPAPISSAIYS-CDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1003 ~~~~~~------~~--~~~~~h~~~v~~v~~s-~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
....++ .+ ....+-...-..+++. .+|.++++--....|..|+..+
T Consensus 252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 111111 00 0011111334456775 6787777777889999999875
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.34 E-value=58 Score=34.99 Aligned_cols=167 Identities=11% Similarity=0.097 Sum_probs=92.1
Q ss_pred cEEEEECCCC--eeeEEecC------CCCCeEEEEee-cc----CCccE-EEEEecCCeEEEEEccCCCceeEec----C
Q 001168 478 MIKVWDVVAG--RKQYTFEG------HEAPVYSVCPH-HK----ESIQF-IFSTAIDGKIKAWLYDYLGSRVDYD----A 539 (1134)
Q Consensus 478 ~i~iwd~~~~--~~~~~~~~------h~~~v~~i~~~-~~----~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~----~ 539 (1134)
.|.+||+.++ +.++++.- ....+..+.+. .. .++.+ .++=+....|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 77776542 23457788877 21 11233 3444457889999998766544331 1
Q ss_pred C--------------CCcEEEEEECCC----CCEEEEEeeCCCCCCcEEEEeCC-----CC---eeEEEecCccC--cce
Q 001168 540 P--------------GNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNES-----EG---AIKRTYSGFRK--RSL 591 (1134)
Q Consensus 540 ~--------------~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~-----~~---~~~~~~~~~~~--~~v 591 (1134)
. ...+..++++|+ ++.|+...... -++|.+. .. ..++.+ +... ..-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEe-eecCCCCCc
Confidence 1 136788999998 77887665321 2333332 11 111111 1111 123
Q ss_pred EEEEEe-CCCCEEEEEeCCCeEEEEECCC-C---eeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001168 592 GVVQFD-TTRNRFLAAGDEFQIKFWDMDN-M---NMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 592 ~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
...++. .+|..+++--+...|..|+..+ . +....+...........+.+..+|.+.+..
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 345665 5676666666889999999876 1 223333222233445666665555544433
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.96 E-value=3.4 Score=51.32 Aligned_cols=82 Identities=20% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEE---eCCCc
Q 001168 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG---MSDGA 1093 (1134)
Q Consensus 1017 ~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~---~~Dg~ 1093 (1134)
...+.+++..++..++++.+.|+++|+|++.+|+++.+.......+.. ..... ....|..+.++.+- ..+|.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~---~~~~~--~~~~~~~~~~i~v~~s~~~~g~ 309 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL---QSFPY--LTSDHTTNSFIALYYPDNSHGS 309 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS---CCCCC--EEECSSSTTEEEEEECCSSSCE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc---ccccc--cccCCCcccEEEEEEcCCCCcE
Confidence 346778888889999999999999999999999999887644322221 11111 11223333444332 24577
Q ss_pred EEEEecCCCc
Q 001168 1094 VHVVEPSDAE 1103 (1134)
Q Consensus 1094 v~vW~~~~~~ 1103 (1134)
.++|.+....
T Consensus 310 F~~~~~~~~~ 319 (950)
T 4gq2_M 310 FSIYKLNANA 319 (950)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEecCC
Confidence 8888765433
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.01 E-value=97 Score=33.48 Aligned_cols=205 Identities=11% Similarity=0.077 Sum_probs=104.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-----------eEEEEecCc-ccceEEEEEecCCCEEEEEcCCCcEE
Q 001168 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-----------EVKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-----------~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
..+..++++. +..+.+.-+.||.|+.|-.... .....+..- ...|..++.. ....+....||.|+
T Consensus 105 ~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~ 181 (389)
T 3kci_A 105 VFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLY 181 (389)
T ss_dssp SCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEE
Confidence 3466678877 7777777889999999965321 111122211 1256666654 34455566789999
Q ss_pred EEeCCCcccc---------cceeeecCCCCCCCCcCceEEEEcC-CCcEEEEEECCeEEEEeCC-Cccc-----------
Q 001168 950 MWSIDKWEKL---------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVHESQISVYDSK-LECS----------- 1007 (1134)
Q Consensus 950 iWd~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~d~~v~vwd~~-~~~~----------- 1007 (1134)
.|-......+ ....+....+ ..+..++... +...++...++.|..|-.+ ..++
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-----~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p 256 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQG-----HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP 256 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCC-----CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc
Confidence 9976432111 1111111111 2355555544 2344555788999999651 1110
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC-CcccccccccC-CCCccEEEeecCCCCCEE
Q 001168 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG-PSAYIPTYAVS-NTAHPLVIAPHPSEPNQI 1085 (1134)
Q Consensus 1008 ~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~d~~~l 1085 (1134)
..+.... ...|..++...+ +.+.-..||.|+.|-....-.+..-. .....|..... ....++.++. .....
T Consensus 257 ~~v~~~~--~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~ 329 (389)
T 3kci_A 257 MKIDSLT--GLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHC 329 (389)
T ss_dssp EECGGGT--TSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEE
T ss_pred EEecccC--CCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeE
Confidence 0011111 234666665444 33444689999999875432221100 00001111000 0122334443 23455
Q ss_pred EEEeCCCcEEEEecCC
Q 001168 1086 ALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1086 ~s~~~Dg~v~vW~~~~ 1101 (1134)
+.-..||.|+.|=.+.
T Consensus 330 ~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 330 VCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETTCCEEEEECCT
T ss_pred EEECCCCCEEEeeCCC
Confidence 5567899999997653
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.74 E-value=1e+02 Score=33.24 Aligned_cols=236 Identities=8% Similarity=0.001 Sum_probs=107.9
Q ss_pred CcCeEEEEECC--CCCEEEEEeCCC----eEEEEEcCCCCcccceeE---eec--------ccCCeeEEEEecC--CCcE
Q 001168 408 AISVNRCVWGP--DGLMLGVAFSKH----IVHLYTYNPTGELRQHLE---IDA--------HVGGVNDIAFAHP--NKQL 468 (1134)
Q Consensus 408 ~~~V~~i~~sp--dg~~las~~~dg----~i~iwd~~~~~~~~~~~~---~~~--------h~~~v~~l~~s~d--~~~~ 468 (1134)
...|.+|++.| ++...|.+ ..| .|.. ..+.++....... +.. ....|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 34699999998 45554444 443 3332 2334443322111 110 1125778999873 34
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecC-------------------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc
Q 001168 469 CIVTCGDDKMIKVWDVVAGRKQYTFEG-------------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~-------------------h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~ 529 (1134)
.+..++..+.|...+ ..|+.-..+.. ....+.+|.+.|..++. +..+..++.|... .
T Consensus 130 ~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~~ggl~~s--~ 205 (394)
T 3b7f_A 130 TWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMSSGGVFES--T 205 (394)
T ss_dssp CEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEETBEEEEE--S
T ss_pred EEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEECCCCEEEE--C
Confidence 345555556555443 23333222211 12357788887754333 4444434443332 3
Q ss_pred CCCceeE-ecC--C-----------CCcEEEEEECCC-CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC-ccC---cc
Q 001168 530 YLGSRVD-YDA--P-----------GNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRK---RS 590 (1134)
Q Consensus 530 ~~~~~~~-~~~--~-----------~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~ 590 (1134)
....... +.. . ...+.++++.|+ ...++++. .+-|...+-. ++.-..+.. ... ..
T Consensus 206 DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D~-G~tW~~~~~~l~~~~~~~ 279 (394)
T 3b7f_A 206 DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDRR-EGVWKRIGDAMPREVGDI 279 (394)
T ss_dssp STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEETT-TTEEECGGGGSCTTTCSC
T ss_pred CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCCC-CCcceECCCCCCCCCccc
Confidence 3222221 110 0 134889999986 35555554 2225444422 222222221 111 13
Q ss_pred eEEEEEeCC-CCEEEEEeC-----------CCeEEEEECCC-CeeEEEEeC--CCCC----CCcceEEEccC-CCEEEEE
Q 001168 591 LGVVQFDTT-RNRFLAAGD-----------EFQIKFWDMDN-MNMLTTVDA--DGGL----PASPRLRFNKE-GSLLAVT 650 (1134)
Q Consensus 591 v~~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~----~~v~~~~~s~d-~~~l~~~ 650 (1134)
+.++.++|. ...++++.. ++...+|...+ ++....+.. .... .....++++|. ...|+.+
T Consensus 280 ~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g 359 (394)
T 3b7f_A 280 GFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFG 359 (394)
T ss_dssp EEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEE
T ss_pred eEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEE
Confidence 566778763 344554431 23344554443 444444321 1100 01246888874 3456666
Q ss_pred eCCCcEE
Q 001168 651 TSDNGIK 657 (1134)
Q Consensus 651 ~~dg~i~ 657 (1134)
+.++.|.
T Consensus 360 ~~~g~l~ 366 (394)
T 3b7f_A 360 TTGGEIW 366 (394)
T ss_dssp CTTSCEE
T ss_pred eCCCeEE
Confidence 6565544
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.89 E-value=1.1e+02 Score=31.13 Aligned_cols=195 Identities=9% Similarity=0.044 Sum_probs=103.2
Q ss_pred CcEEEEEeCCCcEEE---EEcCCceEEEEecCcccceEEEEEec--CCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001168 894 NNIIAIGMEDSSVQI---YNVRVDEVKTKLKGHQNRITGLAFSP--TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 894 ~~~lasg~~dg~i~i---wd~~~~~~~~~l~~h~~~i~~l~~s~--d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
...|+.-+.+|.++- |++..+.....+. ....|.++.. + +..+++.++.+|.++-..+.... ....-.....
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~ 111 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIK 111 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEe
Confidence 345555667776654 3443332111132 3456777654 4 56789999999999998876643 1111011111
Q ss_pred CCCCCCcCceEEEEcCCCcEEEE-EECCeEEEEeC-CCcc-------ccccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001168 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~-------~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg 1039 (1134)
-. ..+.+..+....+...++. +..|.+..+.. +... ...+.... ...|.++...+++..++..+..|
T Consensus 112 lk--egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~--~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 112 LT--EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK--NDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp CC--TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEESSCSEEEEEETTS
T ss_pred cC--CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC--CCEEEEEEEeCCCCEEEEEeCCC
Confidence 00 0134555555544444444 77888777765 1111 11111111 46777777667777888999999
Q ss_pred cEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEE--EecC
Q 001168 1040 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV--VEPS 1100 (1134)
Q Consensus 1040 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~v--W~~~ 1100 (1134)
.++...+..-....+-... .... ......+.+.... +...++..+.+|.+.. .+.+
T Consensus 188 ~~kr~~~~e~~~~~R~gkG--v~~i--~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKG--TEVS--GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCC--EECC--CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred cEEEeEHHHcccCCCCCcc--eEEE--cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 9999987653332221000 0000 0112233332222 3356777788888877 7654
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.12 E-value=1.3e+02 Score=31.43 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=88.9
Q ss_pred CCceEEEEecc---CCCEEEEEe-CCeEEEEEcCCCe-------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q 001168 840 EESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFK-------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 840 ~~~i~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~-------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i 908 (1134)
...|.++..-+ +..++++.+ +|.++-..+.... ....+.. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 44555543333 577888888 8999988876432 1122333 34455555544 4556777889999888
Q ss_pred EEcC--C---------ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc----cceeeecCCCCCCC
Q 001168 909 YNVR--V---------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL----KSRFIQAPAGRQSP 973 (1134)
Q Consensus 909 wd~~--~---------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~----~~~~~~~~~~~~~~ 973 (1134)
+.+. . |...-.|. ..+.|.++...+++..|+.++..|.++.-.++..... +...........
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8766 2 11111232 3456777777667778999999999988877653321 111111111101
Q ss_pred CcCceEEEE-cCCCcEEEEEECCeEEEEeC
Q 001168 974 LVGETKVQF-HNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 974 ~~~v~~~~f-spdg~~l~~~~d~~v~vwd~ 1002 (1134)
..+..+.. ..+...++++.+|.+.-++.
T Consensus 249 -d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 249 -GRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp -CSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred -CeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 23334433 33444555577777766665
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.74 E-value=67 Score=39.71 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001168 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1134)
.+.+++..++..++++.+.|+++|+|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888889999999999999999999999866543
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.19 E-value=1.4e+02 Score=30.34 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=73.0
Q ss_pred CCceEEEEecc-CCCEEEEEe-CCeEEEEEcCCCe------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEc
Q 001168 840 EESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFK------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 911 (1134)
Q Consensus 840 ~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~ 911 (1134)
...|..+.... +..+++..+ +|.++-..+.... ....++ ....+..+.... +...|+..+.+|.+..+..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 55566664422 567888888 8999998876532 112233 234555555555 5567778899999888875
Q ss_pred CC---------ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001168 912 RV---------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 912 ~~---------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
.. |...-.+.. .+.|.++...+++..++..+..|.++...++..
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred hhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 42 212122332 356777766666778889999999988887653
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=59.09 E-value=2e+02 Score=31.00 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=98.2
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEEcCC-----------CeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q 001168 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMT-----------FKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-----------~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~dg~i~i 908 (1134)
.+..++++.-....+.-. +|.|..|-... ......+.. ....|..++. +....+....||.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEE
Confidence 345556655544444444 78888885432 111222222 1225666666 4456666778999999
Q ss_pred EEcCCc-e----------EEEEecC-cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc---------cceeeecC
Q 001168 909 YNVRVD-E----------VKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL---------KSRFIQAP 967 (1134)
Q Consensus 909 wd~~~~-~----------~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~---------~~~~~~~~ 967 (1134)
|-.... + ....+.. ....|..++........+....|+.|..|-......+ ....+...
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 975321 1 1111111 2235777776543355666678999999975432211 00111111
Q ss_pred CCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeCCC-ccc-----------cccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001168 968 AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECS-----------RSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 968 ~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~-~~~-----------~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
.+ ..|..++...+ ..++...++.|..|-.+. .++ ..+.... ...|..|+.... +.+..
T Consensus 263 ~~-----~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~v~~ia~G~~--h~~al 332 (389)
T 3kci_A 263 TG-----LGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ--GKKVIAIATGSL--HCVCC 332 (389)
T ss_dssp TT-----SCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TCCEEEEEECSS--EEEEE
T ss_pred CC-----CcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCC--CCCEEEEEeccC--eEEEE
Confidence 11 12333333222 223336678888886511 110 0111111 245666665433 34445
Q ss_pred ecCCcEEEEeCCCc
Q 001168 1036 FCDGAIGVFDAETL 1049 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~~ 1049 (1134)
..||.|+.|-.+..
T Consensus 333 ~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 333 TEDGEVYTWGDNDE 346 (389)
T ss_dssp ETTCCEEEEECCTT
T ss_pred CCCCCEEEeeCCCC
Confidence 68999999987653
No 371
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.48 E-value=27 Score=40.80 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=30.6
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCC
Q 001168 1019 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 1019 ~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
.|.++. .+..+|++-+.|.++|+|++.+++++.+...
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 355444 4578999999999999999999999887765
No 372
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=54.44 E-value=2.4e+02 Score=30.55 Aligned_cols=203 Identities=11% Similarity=0.023 Sum_probs=95.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-e----------EEEEecCc-ccceEEEEEecCCCEEEEEcCCCcEEE
Q 001168 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 950 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~----------~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1134)
.|..++. +..+.+.-..||.|+.|-.... + ....+... ...|..++... .+.+....|+.|+.
T Consensus 122 ~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA--EHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC--CeEEEEeCCCCEEE
Confidence 5777766 3456666789999999975421 1 11112211 22566666543 44555567899999
Q ss_pred EeCCCcccc------cceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeC-CCcccc-----------ccCC
Q 001168 951 WSIDKWEKL------KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSR-----------SWSP 1012 (1134)
Q Consensus 951 Wd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~-----------~~~~ 1012 (1134)
|-......+ ............ ...+..++... ...++...++.|..|-. ...++. .+..
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~-~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 273 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGW-RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 273 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECS-SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECC-CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc
Confidence 975432211 000000010000 02233443322 12333467788888865 111110 0100
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCC-cccccccc-cCCCCccEEEeecCCCCCEEEEEeC
Q 001168 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYA-VSNTAHPLVIAPHPSEPNQIALGMS 1090 (1134)
Q Consensus 1013 ~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~d~~~l~s~~~ 1090 (1134)
.. ...|..++...+ +.+.-..||.|+.|-.+..-.+..-.. ....|... ......+..++. .....+.-..
T Consensus 274 ~~--~~~v~~i~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~---G~~hs~alt~ 346 (406)
T 4d9s_A 274 LS--NSFISQISGGWR--HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC---GWRHTLAVTE 346 (406)
T ss_dssp GT--TSCEEEEEECSS--EEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE---CSSEEEEEET
T ss_pred cC--CCCEEEEEecCC--EEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe---CCCeEEEEeC
Confidence 11 234666665433 344456899999997654322211000 00000000 000122334443 2345555678
Q ss_pred CCcEEEEecC
Q 001168 1091 DGAVHVVEPS 1100 (1134)
Q Consensus 1091 Dg~v~vW~~~ 1100 (1134)
||.|+.|=..
T Consensus 347 ~G~v~~wG~n 356 (406)
T 4d9s_A 347 RNNVFAWGRG 356 (406)
T ss_dssp TSCEEEEECC
T ss_pred CCCEEEecCC
Confidence 9999999754
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.21 E-value=3.7 Score=52.41 Aligned_cols=41 Identities=22% Similarity=0.051 Sum_probs=34.4
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcc
Q 001168 1019 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1059 (1134)
Q Consensus 1019 ~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1059 (1134)
.+.+++..++..+|++-+.|+++|+|++.+++++.+.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 45566677889999999999999999999999998866543
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=47.64 E-value=2.6e+02 Score=29.07 Aligned_cols=241 Identities=9% Similarity=0.048 Sum_probs=120.1
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCe----EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC---C------ce
Q 001168 850 KNDSYVMSAS-GGKVSLFNMMTFK----VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---V------DE 915 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~----~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~---~------~~ 915 (1134)
|+..++++.+ +|.|+--.+...+ .-..++. ...+..+.... ....|+..+..|.++-.... . |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 4556667777 7888766554211 0111222 23344444444 45566678888887666542 2 22
Q ss_pred EEEE---ecCcccceEEEEEecC---CCEEEEEcCCCcEEEEeCCCccccc---cee-eecCCCCCCCCcCceEEEEcC-
Q 001168 916 VKTK---LKGHQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWEKLK---SRF-IQAPAGRQSPLVGETKVQFHN- 984 (1134)
Q Consensus 916 ~~~~---l~~h~~~i~~l~~s~d---~~~l~s~~~D~~i~iWd~~~~~~~~---~~~-~~~~~~~~~~~~~v~~~~fsp- 984 (1134)
.+.. +. -...|.++..-++ +.+++.++.+|.++--.+....... ... +....+ +.+..+....
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2111 22 2334666544333 6688999999999998886543321 111 111111 2344444443
Q ss_pred CCcEEEEEECCeEEEEeC-CCc-------cccccCCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCcceeeec
Q 001168 985 DQTHLLVVHESQISVYDS-KLE-------CSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLRFRCRI 1055 (1134)
Q Consensus 985 dg~~l~~~~d~~v~vwd~-~~~-------~~~~~~~~~~h~~~v~~v~~s~dg~-~l~~~~~dg~I~vwd~~~~~~~~~~ 1055 (1134)
+...++++.+|.+..+.. +-. -++.+... -...|.++..-+++. .|++.+..|..+..++..-....+-
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~--~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg 232 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK--EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRA 232 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC--TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTT
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC--CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCC
Confidence 444555578888877776 111 11111111 145677776544455 7888889999888777642222111
Q ss_pred CCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001168 1056 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
......+...-......+++.... +++.++..+..|.+....+++
T Consensus 233 ~kGv~~~~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 233 KRGVVILRELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCEECSCCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred CCCEECeeecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 100000000001111233222222 235666777788776666653
No 375
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=46.26 E-value=76 Score=32.89 Aligned_cols=111 Identities=13% Similarity=0.228 Sum_probs=59.2
Q ss_pred HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhcccc-ccccCHHHHHHHH
Q 001168 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKV-FSSFNEELFKEIT 116 (1134)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~-~~~~~~~~~~~l~ 116 (1134)
..+|++.|.+|+|.+|.+.++.+. .-++..++..+|+.+|.+-..- ++.-....--.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~--------------------~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA--------------------NRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHHH--------------------HHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 678899999999999998776551 1122334444444444432111 1122333344555
Q ss_pred HhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCC
Q 001168 117 QLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCK 187 (1134)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~ 187 (1134)
.++... .... ...-...++++|. +|-+.+|++. + ...++++.+++|-.....
T Consensus 77 ~llvev-~~~~----~~~~~~~~~~rl~-~l~~~~p~~~------------~-~r~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 77 FYLLEV-YDLA----EVKVDDISVARLV-RLIAELDPSE------------P-NLKDVITGMNNWSIKFSE 128 (312)
T ss_dssp HHHHHH-HHHT----TCCCSHHHHHHHH-HHHTTCCTTC------------T-THHHHHHHHHHHHHHTSS
T ss_pred HHHHHH-HHHc----CCCCCHHHHHHHH-HHHHHCCCCC------------c-hHHHHHHHHHHHHhhcCC
Confidence 544421 1111 1112355666666 4444555532 2 358889999999877444
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=42.36 E-value=3.1e+02 Score=28.47 Aligned_cols=193 Identities=9% Similarity=0.052 Sum_probs=99.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccc-ceeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC---C------CC
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV---V------AG 487 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~---~------~~ 487 (1134)
|+...+++.+.+|.|+--.+..-+... .-..+.. .+.+..+....... .|+..+..|.++-... . .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 456678888999999877654210000 0001222 23444444444444 4555666777655543 2 23
Q ss_pred eeeEE---ecCCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEccCCC------cee--EecCCCCcEEEEEECCCCCE
Q 001168 488 RKQYT---FEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLG------SRV--DYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 488 ~~~~~---~~~h~~~v~~i~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~------~~~--~~~~~~~~v~~~~~s~~~~~ 555 (1134)
.++.. +. ....|.++..... .++.+++.++.+|.++.-.+.... ... .+.. ...+..+........
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNE 157 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCE
Confidence 32211 22 2334555533322 224689999999999998775321 111 2222 244444444444445
Q ss_pred EEEEeeCCCCCCcEEEEeCCCC-------eeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCC
Q 001168 556 LFSCGTSKEGESHLVEWNESEG-------AIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 619 (1134)
++..+. .|.+..++...- +-++.+....+..|.++...+++. .+++.+..|..+..++..
T Consensus 158 i~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 158 LFLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 555542 666777765321 112222222232455554444444 788888888888777653
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.16 E-value=80 Score=36.22 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=47.4
Q ss_pred cEEEEEECCCCCEEEEEeeCC--------CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE
Q 001168 543 WCTMMAYSADGTRLFSCGTSK--------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~--------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1134)
..-.|+|+|.|++++.--.+. .+...+.+.+..+++..+-+.+.....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 456899999999666542110 1234577778888988888888877789999999999887764
No 378
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.81 E-value=3.2e+02 Score=28.13 Aligned_cols=192 Identities=12% Similarity=0.066 Sum_probs=96.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCcccc------eeEeecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC---CC--
Q 001168 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ------HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV---VA-- 486 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~------~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~---~~-- 486 (1134)
|+...+++.+.+|.|+--.+..-...+. -..+.. .+.+..+....... .|+..+..|.++-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3456788889999998776654221110 001111 22343444444444 4555566776554443 22
Q ss_pred ----CeeeE---EecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEccCCCc-----ee--EecCCCCcEEEEEECC
Q 001168 487 ----GRKQY---TFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGS-----RV--DYDAPGNWCTMMAYSA 551 (1134)
Q Consensus 487 ----~~~~~---~~~~h~~~v~~i~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~-----~~--~~~~~~~~v~~~~~s~ 551 (1134)
|..+. .+. ....|.++.... ..+..+++..+.+|.++.-.+..... .. .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 22221 122 234565554322 12346899999999999987753211 11 22222 4444444444
Q ss_pred CCCEEEEEeeCCCCCCcEEEEeCCCCe-------eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001168 552 DGTRLFSCGTSKEGESHLVEWNESEGA-------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1134)
+...++..+. .|.+..++...-. -+..+....+..|.++....++..+++.+..|.++-.++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445555442 6667666653211 1111222223355555544556678888899998888764
No 379
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=39.63 E-value=5.6e+02 Score=30.61 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEECCC-CCEEE
Q 001168 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g~~la 424 (1134)
...|.+++++|....++.+++..|.|...+ +.|+. |..... .... -.-....|.++++.|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~t--------W~~~~~--~~~~--~~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSK--------WIPLND--FIEA--QDMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTE--------EEESCT--TCCG--GGGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCC--------eeECcc--CCCc--ccccCCceeEEEECCCCCCEEE
Confidence 358999999997544555666666654443 22221 211000 0000 0002346999999984 34444
Q ss_pred EEeCCC-----eEEEEEcCCCCcccceeE-ee--c---ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeeeEE
Q 001168 425 VAFSKH-----IVHLYTYNPTGELRQHLE-ID--A---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT 492 (1134)
Q Consensus 425 s~~~dg-----~i~iwd~~~~~~~~~~~~-~~--~---h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~-~~~~~~~ 492 (1134)
++..+. ...+...+.|+....... +. + ....+..+++.|.... .++.+...+.| |-.. .|+.-..
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~gl--~~S~DgG~TW~~ 157 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEGI--WKSSDRAKTWTN 157 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSCE--EEESSTTSSCEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCCE--EEECCCCcccCC
Confidence 443221 223334445544432211 00 0 0113567888886543 45555544433 3323 3333222
Q ss_pred ecC------CCCCeEEEEeeccCCccEEEEEecC
Q 001168 493 FEG------HEAPVYSVCPHHKESIQFIFSTAID 520 (1134)
Q Consensus 493 ~~~------h~~~v~~i~~~~~~~~~~l~s~~~d 520 (1134)
+.. ....+..+.++|... ..++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 158 VTSIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp ETTSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred CccCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 221 124578888887654 345555444
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=39.16 E-value=73 Score=36.10 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=41.1
Q ss_pred cCceEEEEcCCCcEEEEEE-------------CCeEEEEeCCCccccccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001168 975 VGETKVQFHNDQTHLLVVH-------------ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~-------------d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
.....++|.++|.+.+... ...|..++.....+..+... ....+++.++||||+++|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEE
Confidence 4567899999999887421 12566777743444444321 1146799999999999887764
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=38.34 E-value=1e+02 Score=36.03 Aligned_cols=37 Identities=5% Similarity=0.140 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC
Q 001168 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~ 922 (1134)
.|.++.+ +..+|++-+.|+++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555555 457999999999999999999998877553
No 382
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.07 E-value=3.7e+02 Score=27.74 Aligned_cols=191 Identities=8% Similarity=0.082 Sum_probs=104.6
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCeE-------EEE--ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC---c--
Q 001168 850 KNDSYVMSAS-GGKVSLFNMMTFKV-------MTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---D-- 914 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~-------~~~--~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~---~-- 914 (1134)
++..++++.+ +|.|+-..+...+. +.. +.. ...+..+.... ....++..+..|.++-..... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 4556677777 88888776654321 111 222 23344444444 455677788899877766532 1
Q ss_pred ----eEE---EEecCcccceEEEEEec---CCCEEEEEcCCCcEEEEeCCCccccc--ceeeecCCCCCCCCcCceEEEE
Q 001168 915 ----EVK---TKLKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 915 ----~~~---~~l~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
..+ -.+. -...|.++...+ +..+|+..+..|.++--.+....... ......... ...+..+..
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~----~d~lv~~~~ 158 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND----KDFVTSAEI 158 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT----TCCEEEEEE
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC----CCEEEEEEE
Confidence 110 0122 224466654443 46778889999999888876543211 111111111 134455544
Q ss_pred c-CCCcEEEEEECCeEEEEeC-CC----c---cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001168 983 H-NDQTHLLVVHESQISVYDS-KL----E---CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 983 s-pdg~~l~~~~d~~v~vwd~-~~----~---~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
. ++...++++.+|.+..+.. +- + -.+.+.... ...|.++..-.++..|++.+..|..+..++..-
T Consensus 159 ~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~--~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 159 VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE--GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT--TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC--CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 4 4444555578888888776 21 1 111111111 456777766666777888899999999988653
No 383
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.99 E-value=1.2e+02 Score=31.82 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHHHHhhcccH---HHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHH
Q 001168 38 MKHFEDQVQAGEW---DEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKE 114 (1134)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 114 (1134)
+.+|++.|.+|+| .+|.+.++.+. .+| +.+.+|-|.++.- .+.|+.+|+. -....--.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~----------~Ry-~~~k~y~eAidLL-~~GA~~ll~~-------~Q~~sg~D 76 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVA----------ARY-SKQGNWAAAVDIL-ASVSQTLLRS-------GQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH----------HHH-HHTTCHHHHHHHH-HHHHHHHHHT-------TCHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHH----------HHH-HhhcCHHHHHHHH-HHHHHHHHHC-------CCcchHHH
Confidence 6789999999999 99988776541 111 2233333222210 1124444442 12333345
Q ss_pred HHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhC
Q 001168 115 ITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLC 186 (1134)
Q Consensus 115 l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~ 186 (1134)
|+.++..- .... ...-...++.+|.+-+. .+||+. |. ...+++.+++|-....
T Consensus 77 L~~llvev-y~~~----~~~~~~~~~~rL~~L~~-~~~~~~------------p~-r~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 77 LAVLLVDT-FRQA----GQRVDGASRGKLLGCLR-LFQPGE------------PV-RKRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHHH-HHHH----TCCCCHHHHHHHHHHHT-TSCTTC------------HH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-HHHc----CCCCCHHHHHHHHHHHH-hCCCCC------------cH-HHHHHHHHHHHHhhcC
Confidence 55544421 1111 11123456666655554 445421 33 4789999999987644
No 384
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=34.77 E-value=33 Score=27.18 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001168 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1134)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1134)
-+.-||-.||.=.||+-|...++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999986
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.07 E-value=1.2e+02 Score=38.34 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001168 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
.+.+++..+ +..++++-+.|+++|||++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 345566666 7889999999999999999999998774
No 386
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=33.71 E-value=48 Score=29.18 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHhhhhcchH-HHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHhcCcccc--cccchhhHHHHHHH--
Q 001168 3 SLSRELVFLILQFLDEEKFK-ETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKV--EDNRYSMKIFFEIR-- 77 (1134)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~--~~~~~~~~~~~~i~-- 77 (1134)
-.++++...|+..|.+.||- .+.+.+.++.|+..+ +...|++.++.+.+. -...+..-++..|.
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~ 87 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEI 87 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcC
Confidence 34567889999999999984 455566666665443 234455555555432 11222221112111
Q ss_pred -------HHHHHH-HHhccCHH-HHHHHHHhccccc
Q 001168 78 -------KQKYLE-ALDRQDRA-KAVEILVKDLKVF 104 (1134)
Q Consensus 78 -------~~~~lE-ll~~~~~~-~A~~~l~~~~~~~ 104 (1134)
-..+|| +|.++++. +|+.++| .|.|-
T Consensus 88 ~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 88 YPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred chhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 124677 77777644 4666666 44443
No 387
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.45 E-value=1.3e+02 Score=30.83 Aligned_cols=85 Identities=15% Similarity=0.041 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhhhhcc-hHHHHHHHHH--hcCCCcc---HHHH--HHHhhcccHHHHHHHhcCcccccccchhhHHHHHH
Q 001168 5 SRELVFLILQFLDEEK-FKETVHKLEQ--ESGFFFN---MKHF--EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEI 76 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g-~~~s~~~L~~--Esg~~~~---~~~~--~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i 76 (1134)
.-+.++++.+++...| +.++.+.|++ +.++..+ ...+ .-....|++++|+..+.+ +.. .. +.+ .
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~--~~-~~~-~ 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDS--LE-CMA-M 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCS--HH-HHH-H
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCC--HH-HHH-H
Confidence 3456788888888887 7777777776 3333222 1111 234567888888888876 111 11 111 1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhc
Q 001168 77 RKQKYLEALDRQDRAKAVEILVKD 100 (1134)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~ 100 (1134)
.-+. ++..|+..+|+..|++-
T Consensus 136 l~~~---~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 136 TVQI---LLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHH---HHHTTCHHHHHHHHHHH
T ss_pred HHHH---HHHCCCHHHHHHHHHHH
Confidence 1111 34467777777777664
No 388
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.37 E-value=1.7e+02 Score=33.21 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=45.7
Q ss_pred cEEEEEECCCCCEEEEEeeC--------CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE
Q 001168 543 WCTMMAYSADGTRLFSCGTS--------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1134)
....|+|.++|.+.+..-.+ ..+...+..++..++++...+.+.....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 56789999999887743111 01233688888888887776665544478999999999988775
No 389
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=32.29 E-value=1.7e+02 Score=25.11 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=49.1
Q ss_pred hhhhcchHHHHHHHHHhcCCCcc-HH----HHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccC
Q 001168 15 FLDEEKFKETVHKLEQESGFFFN-MK----HFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQD 89 (1134)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~ 89 (1134)
|++..-|.++...+++=-.+..+ .. .=.-....|+|++|+..+.+.-..++.. .. . |.-+-.. +...|+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a-~~~lg~~---~~~~~~ 96 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-G-YIRKAAC---LVAMRE 96 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH---HHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-H-HHHHHHH---HHHCCC
Confidence 45555577777776653222222 11 1122345688888888776543332221 11 1 1111122 344688
Q ss_pred HHHHHHHHHhccccccccCHHHHHHHHHhh
Q 001168 90 RAKAVEILVKDLKVFSSFNEELFKEITQLL 119 (1134)
Q Consensus 90 ~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~ 119 (1134)
..+|+..+++-+.-- -.+.+-...|..+|
T Consensus 97 ~~~A~~~~~~al~l~-P~~~~a~~~l~~~l 125 (126)
T 4gco_A 97 WSKAQRAYEDALQVD-PSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHC-cCCHHHHHHHHHhc
Confidence 888888888754421 12444445555443
No 390
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=32.27 E-value=2.2e+02 Score=23.75 Aligned_cols=89 Identities=8% Similarity=-0.029 Sum_probs=49.3
Q ss_pred HHHHHHHhhhhcchHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHH
Q 001168 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYL 82 (1134)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~l 82 (1134)
...+-..++...-|.++...+++=.....+ ...-.-....|+|++|+..+.......... .. +.+ .+-..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~-~la~~-- 93 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IK-GYT-RKAAA-- 93 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hH-HHH-HHHHH--
Confidence 444555556666677777777765444332 111122456789999988886643332221 11 111 11112
Q ss_pred HHHhccCHHHHHHHHHhccc
Q 001168 83 EALDRQDRAKAVEILVKDLK 102 (1134)
Q Consensus 83 Ell~~~~~~~A~~~l~~~~~ 102 (1134)
+...|+..+|+..+++.+.
T Consensus 94 -~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 -LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp -HHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhhHHHHHHHHHHHHH
Confidence 3356888889888887543
No 391
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=30.57 E-value=5.4e+02 Score=27.72 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEc--C-CceE---------EEEecCcccceEEEEEecCCCEEEEEcCCCcEE
Q 001168 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNV--R-VDEV---------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~--~-~~~~---------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
..|..++.. ..+.+.-..||.|+.|-. . .+++ ..........|..|+... .+.+....|+.|+
T Consensus 127 ~~i~~va~G---~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~--~hs~alt~~G~v~ 201 (423)
T 3mvd_K 127 GKALCISAG---DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA--DHLVILTTAGKVF 201 (423)
T ss_dssp SCEEEEEEC---SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS--SEEEEEETTSCEE
T ss_pred CCEEEEEcC---cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC--CeEEEEecCCeEE
Confidence 356666653 455566788999999975 2 2221 111111233577776543 3445556789999
Q ss_pred EEeCCC
Q 001168 950 MWSIDK 955 (1134)
Q Consensus 950 iWd~~~ 955 (1134)
.|-...
T Consensus 202 ~wG~n~ 207 (423)
T 3mvd_K 202 TVGCAE 207 (423)
T ss_dssp EEECCT
T ss_pred EeeCCc
Confidence 997543
No 392
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=29.21 E-value=4.8e+02 Score=26.73 Aligned_cols=239 Identities=12% Similarity=0.073 Sum_probs=119.8
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCeEEE---------EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC---C----
Q 001168 851 NDSYVMSAS-GGKVSLFNMMTFKVMT---------MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---V---- 913 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~---------~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~---~---- 913 (1134)
+..++++.+ +|.|+--.+.+.+... .++. ...+..+.... ....|+..+..|.++-.... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 455667777 8888777665432211 1222 23343444433 44566677888887666542 2
Q ss_pred --ceEEE---EecCcccceEEEEEe---cCCCEEEEEcCCCcEEEEeCCCccccc--ce-eeecCCCCCCCCcCceEEEE
Q 001168 914 --DEVKT---KLKGHQNRITGLAFS---PTLNALVSSGADAQLCMWSIDKWEKLK--SR-FIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 914 --~~~~~---~l~~h~~~i~~l~~s---~d~~~l~s~~~D~~i~iWd~~~~~~~~--~~-~~~~~~~~~~~~~~v~~~~f 982 (1134)
|..+. .+. ....|.++..- .++.+++.++.+|.++--.+....... .. .+....+ +.+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22211 122 33456666542 356678899999999988776433221 11 1111111 23444444
Q ss_pred c-CCCcEEEEEECCeEEEEeC-CCcc-------ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceee
Q 001168 983 H-NDQTHLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1053 (1134)
Q Consensus 983 s-pdg~~l~~~~d~~v~vwd~-~~~~-------~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~ 1053 (1134)
. .+...++.+.+|.+..++. +-.. ...+... -...|.++....++..|++.+..|.++-.++..-....
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~ 231 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 231 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCC
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCC
Confidence 3 4444555577888777766 1111 1111111 14567777666666778888999999988875422111
Q ss_pred ecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001168 1054 RIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+-......... .......+++.... +...++..+.+|.+.-..+++
T Consensus 232 Rg~kG~~~~~~-~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 232 RATKGVISIKV-TERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TTSCCEESSCC-CTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCCEEeeEe-cCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 11000000000 01113333433323 235566777788777666653
No 393
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.57 E-value=3.5e+02 Score=27.40 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=8.1
Q ss_pred hccCHHHHHHHHHh
Q 001168 86 DRQDRAKAVEILVK 99 (1134)
Q Consensus 86 ~~~~~~~A~~~l~~ 99 (1134)
..|+..+|+..+++
T Consensus 113 ~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ 126 (291)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHhC
Confidence 44666666666555
No 394
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=28.11 E-value=6.2e+02 Score=27.65 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=37.2
Q ss_pred CcccccccccccccccccCCCC--CccceeEEecCCc--ccccceEEEEEecC--------CcceeeeeccceEEEeec
Q 001168 735 DVKPRVAEDVDKIKSWRIPDIS--DPSQIKALRLPDS--IAASKVVRLIYTNS--------GLSLLALASNAVHKLWKW 801 (1134)
Q Consensus 735 ~~~~~~~~~~~~i~~w~~~~~~--~~~~~~~~~~~~~--~~~~~v~~~~~s~~--------g~~l~~~~~dg~v~vw~~ 801 (1134)
...+...-....+.+|++.... ....|+.+.+|.. .+.....++...+. .--+++...+|.|+.|.-
T Consensus 47 ~~GyAlvv~~~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsptG~VryWes 125 (450)
T 1xks_A 47 EGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPS 125 (450)
T ss_dssp TTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECTTCEEEEESC
T ss_pred CCcEEEEEeCCeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcCCccEEEccc
Confidence 4444555556788999988652 2245666777652 22232334332222 122445555999999963
No 395
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=27.92 E-value=5.3e+02 Score=26.76 Aligned_cols=203 Identities=11% Similarity=0.054 Sum_probs=106.7
Q ss_pred CCceEEEEeccCCCEEEEE-eCCeEE---EEEcCC------CeEEEEec--CCCCceEEEEEcCC--CCcEEEEEeCCCc
Q 001168 840 EESAACIALSKNDSYVMSA-SGGKVS---LFNMMT------FKVMTMFM--SPPPAATFLAFHPQ--DNNIIAIGMEDSS 905 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~-sdg~i~---vwd~~~------~~~~~~~~--~~~~~i~~l~~s~~--~~~~lasg~~dg~ 905 (1134)
...+..+........|+.- +.|.+. +|++.. |..+..+- .....|.++..-++ +..++++.+.+|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3445555444444444444 467644 444442 22222211 12345655544331 4678999999999
Q ss_pred EEEEEcCCceE-------EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCC--C----cccccceeeecCCCCCC
Q 001168 906 VQIYNVRVDEV-------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID--K----WEKLKSRFIQAPAGRQS 972 (1134)
Q Consensus 906 i~iwd~~~~~~-------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~--~----~~~~~~~~~~~~~~~~~ 972 (1134)
++--.+..... ...++. .+.+..+........|+..+..|.+..+.+. . +........-.+.
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~---- 195 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN---- 195 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC----
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC----
Confidence 99988765321 122333 3556666655566678888888988877776 2 1111111111111
Q ss_pred CCcCceEEEEcCCCcEEEE-EECCeEEEEeC-CC-------ccccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001168 973 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL-------ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1134)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~-------~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~v 1043 (1134)
....|..+...+++.+++. +..|.++.-.+ +. +-+..+.... -.+.+..+....+...++..+.+|.+.-
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~~d~lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-RRGRLVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-TTCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-CCCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence 1134666655555555544 67787777665 11 1111121111 0334555555445556666778888888
Q ss_pred EeCCC
Q 001168 1044 FDAET 1048 (1134)
Q Consensus 1044 wd~~~ 1048 (1134)
+++..
T Consensus 275 ~~~~~ 279 (327)
T 3uc1_A 275 TAARQ 279 (327)
T ss_dssp EEGGG
T ss_pred Eehhh
Confidence 87764
No 396
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=27.47 E-value=3.2e+02 Score=24.05 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCCCcc--HHHH---HHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccCHHHHHH
Q 001168 21 FKETVHKLEQESGFFFN--MKHF---EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVE 95 (1134)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~~~~---~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~ 95 (1134)
+.++.+.+++-.....+ +..| +-....|+|++|+..+.+.-...+.. .. + +..+-.. +...|+..+|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~-a-~~~lg~~---~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PK-A-HRFLGLL---YELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH---HHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-H-HHHHHHH---HHHcCchHHHHH
Confidence 44555555554443332 1111 23467799999999998754443322 11 2 2222222 335699999999
Q ss_pred HHHhccccccccCHHHHHHHHHhhcc
Q 001168 96 ILVKDLKVFSSFNEELFKEITQLLTL 121 (1134)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~l~~~ 121 (1134)
.+++.+.-- ..+++-+..|+.++..
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999865422 2366777888877654
No 397
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.36 E-value=1.4e+02 Score=34.21 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=43.4
Q ss_pred eEEEEEeCCCCEEEEEeCC------------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001168 591 LGVVQFDTTRNRFLAAGDE------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 591 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
.-.|+|+|.|..+++-..+ ..+.+.+..+++....+..+.. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC-ccCcCeeECCCCCEEEEE
Confidence 3558999999877664321 3466667778888777776654 488999999999888765
No 398
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=26.70 E-value=36 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHhhhhc
Q 001168 1 MSSLSRELVFLILQFLDEE 19 (1134)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~ 19 (1134)
|+..++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778899999999999864
No 399
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.66 E-value=1.1e+02 Score=27.71 Aligned_cols=20 Identities=25% Similarity=0.036 Sum_probs=15.3
Q ss_pred HHHHHhccCHHHHHHHHHhc
Q 001168 81 YLEALDRQDRAKAVEILVKD 100 (1134)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~ 100 (1134)
.-|++..++..+|..++++-
T Consensus 16 L~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHh
Confidence 44677778899999998853
No 400
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.51 E-value=1.2e+02 Score=26.60 Aligned_cols=23 Identities=22% Similarity=-0.060 Sum_probs=16.2
Q ss_pred HHHHHhccCHHHHHHHHHhcccc
Q 001168 81 YLEALDRQDRAKAVEILVKDLKV 103 (1134)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~~~~ 103 (1134)
.-|++..|+..+|..++++--.|
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHcCCCHHHHHHHHHHhCCC
Confidence 44677778888888888853333
No 401
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.98 E-value=6.1e+02 Score=26.85 Aligned_cols=194 Identities=10% Similarity=-0.025 Sum_probs=106.8
Q ss_pred cCCCEEEEEe-CCeEEEEEcCC---------CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC---C---
Q 001168 850 KNDSYVMSAS-GGKVSLFNMMT---------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---V--- 913 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~---------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~---~--- 913 (1134)
|+..++++.+ +|.|+--.+.. +..-..++ ....+..+.... ....|+..+..|.++-+... .
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 5677788887 88888765432 22233344 344555555555 55667778888887766532 2
Q ss_pred ---ceEEEE---ecCcccceEEEEEec---CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcC
Q 001168 914 ---DEVKTK---LKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 914 ---~~~~~~---l~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
|..+.. +. ....|.++..-. ++.+|+.++..|.++--.+.........-+....-.. ...+..+....
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~--~d~lv~v~~~~ 159 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE--GDALVGVALTD 159 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT--TCCEEEEEEEC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC--CCEEEEEEEeC
Confidence 222211 22 235566665432 4568999999999999887654422111111111000 13344444444
Q ss_pred CC-cEEEEEECCeEEEEeC-CCc-------cccccCCCCCCCCCeEEEEEcc----------------------------
Q 001168 985 DQ-THLLVVHESQISVYDS-KLE-------CSRSWSPKDALPAPISSAIYSC---------------------------- 1027 (1134)
Q Consensus 985 dg-~~l~~~~d~~v~vwd~-~~~-------~~~~~~~~~~h~~~v~~v~~s~---------------------------- 1027 (1134)
+. ..++++..|.+..++. +-. -++.+... -...|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~--~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA--KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEEEECCC--------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC--CCCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 33 4444477788777765 111 11111111 145676666554
Q ss_pred -------CCCEEEEEecCCcEEEEeCCCcc
Q 001168 1028 -------DGLLVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 1028 -------dg~~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
++..+++.+..|..+...+..-.
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGGSC
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 45688899999999998876433
No 402
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=25.91 E-value=7.5e+02 Score=27.87 Aligned_cols=186 Identities=13% Similarity=0.031 Sum_probs=97.9
Q ss_pred eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCCCCeEEEEeeccCCccEEEEEecCC----eEEEEEccC
Q 001168 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDY 530 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~~~l~s~~~d~----~i~~wd~~~ 530 (1134)
..-..+.-||+. -|+.|+ .+.| .+|+.+... .+|...+....|.|+..|.-++.+..++ -..+.|..+
T Consensus 328 ~~vaDVDgDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 328 LSIADVDGDGKD-EIIFGS-----MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CEEECCSSSSSC-EEEETT-----EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CeeEeCCCCCCc-eEEEee-----eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 444555667765 455555 2444 455555543 2788888888898887777787776652 344578888
Q ss_pred CCceeEecCC--CCcEEEEEECCCCC--EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE
Q 001168 531 LGSRVDYDAP--GNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 531 ~~~~~~~~~~--~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1134)
++.+...... .+......|.|+.. .+.+ . -.+++.. |+.+.... ....-..+-|..|...-+.-
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-~--------~~l~~~~-G~~i~~~~--p~~~N~~i~WdGDl~relld 468 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA-N--------GSLYSAK-GVKIGSGV--PSSTNFGIWWDGDLLREQLD 468 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE-T--------TEEECTT-SCBCSSCC--CSCCSEEECCSSSSSCEEEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEe-c--------CceECCC-CCEecCCC--CCCcceeEEECCCCcHhhhC
Confidence 8877766543 23333444445432 1111 0 1245533 34333210 11122346677776333332
Q ss_pred eCCCeEEEEECCCCeeEEEEeCCC-----CCCCcceEEE--ccCCC-EEEEE-eCCCcEEEEECC
Q 001168 607 GDEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRF--NKEGS-LLAVT-TSDNGIKILANS 662 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~--s~d~~-~l~~~-~~dg~i~iw~~~ 662 (1134)
.+.|.-|+...++....+...+ +...-.++.. .-|.+ -++.. .++..++||...
T Consensus 469 --~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 469 --SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp --TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred --CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 3478889988777554444332 1112223333 22322 34434 445579999764
No 403
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=25.61 E-value=2.4e+02 Score=28.48 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=51.7
Q ss_pred HhhhhcchHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhcc
Q 001168 14 QFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQ 88 (1134)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~ 88 (1134)
.++..-.+.++...+++=.....+ ...-+-.+..|++++|+..+.++....+.. ....-..-++++..+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHHhhc
Confidence 334444466665555543222222 122233456788888888888764433221 111223334455566
Q ss_pred CHHHHHHHHHhccccccccCHHHHHHHHHhhcc
Q 001168 89 DRAKAVEILVKDLKVFSSFNEELFKEITQLLTL 121 (1134)
Q Consensus 89 ~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 121 (1134)
+..+|+..|++.+.-. -.+.+-...|+.++..
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 6666777777654422 2245555566655543
No 404
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.55 E-value=11 Score=31.81 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHhcCc
Q 001168 24 TVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60 (1134)
Q Consensus 24 s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~l 60 (1134)
.+..+-+|||+..++..+-..| +|+||++++.++++
T Consensus 37 ~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 37 RAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 3444556899999877766655 49999998877653
No 405
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.99 E-value=47 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc
Q 001168 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN 37 (1134)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1134)
.++.+-|+++|++.| .++..|.+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467888899999999 899999999998775
No 406
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=23.66 E-value=9.8e+02 Score=28.43 Aligned_cols=149 Identities=10% Similarity=0.039 Sum_probs=72.2
Q ss_pred CcCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCCCcccceeEeec----ccCCeeEEEEecCCCcEEEEEEcC-C--CcE
Q 001168 408 AISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA----HVGGVNDIAFAHPNKQLCIVTCGD-D--KMI 479 (1134)
Q Consensus 408 ~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~s~d~~~~~l~sg~~-d--~~i 479 (1134)
.+.|.+|+++|. ...+.+++..+.|...+ +.|+.......... ....|.++++.|.....+++..+. . ..-
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999995 45566666666554443 33443332111000 134699999998543313333222 2 002
Q ss_pred EEEEC-CCCeeeEEecC--C-----C--CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-ec------CCCC
Q 001168 480 KVWDV-VAGRKQYTFEG--H-----E--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD------APGN 542 (1134)
Q Consensus 480 ~iwd~-~~~~~~~~~~~--h-----~--~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~------~~~~ 542 (1134)
.||-. ..|+.-..+.. . . ..+..++++|... ..++.+...+. +|....+..... .. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~-~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS-NEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE-EEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC-CEEEEEeccCC--EEEECCCCcccCCCccCccccCCCC
Confidence 33332 33433222211 0 1 1355677777543 45555553443 343333332221 11 1124
Q ss_pred cEEEEEECCC-CCEEEEEe
Q 001168 543 WCTMMAYSAD-GTRLFSCG 560 (1134)
Q Consensus 543 ~v~~~~~s~~-~~~l~~~~ 560 (1134)
.+..+.+.|. +..++++.
T Consensus 170 ~~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASA 188 (789)
T ss_dssp CEEEEEECTTSTTCEEEEE
T ss_pred CeEEEEECCCCCCEEEEEE
Confidence 5788899884 34555544
No 407
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.58 E-value=45 Score=19.26 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhhhh
Q 001168 5 SRELVFLILQFLDE 18 (1134)
Q Consensus 5 ~~e~~rli~q~L~~ 18 (1134)
=+||++||-||-..
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 36888888888654
No 408
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.56 E-value=2.8e+02 Score=23.28 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=30.5
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEcCCCcEEEEEECCeEEEEeC
Q 001168 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~ 1002 (1134)
..+.+..||.+++... ++ +|...+... .....+.+..||.+++...++.+.+|..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~----------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR----------------GVDCTLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS----------------CSSCEEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC----------------CcCEEEEEcCCCcEEEEeCCCCEEEEEe
Confidence 4566667777666432 22 776554210 1124567788888777644444446643
No 409
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=20.70 E-value=9.4e+02 Score=27.10 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=38.2
Q ss_pred CeeEEEec-CccCcceEEEEEeCCC--CEEEEEeCCC----eEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001168 577 GAIKRTYS-GFRKRSLGVVQFDTTR--NRFLAAGDEF----QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 577 ~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
|+.+.... +|.+ .+....|.|+. -.++.+.+++ -..+.|..+++.+................|.|+
T Consensus 352 G~~L~st~~gHGD-a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 352 GKGMYSTGLGHGD-ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp SCEEEECSCCCCS-CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTT
T ss_pred CCEeeeCCCCCCC-eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCC
Confidence 44444433 4444 67777788874 4666665541 355689999999887764433333333334444
Done!