Query 001169
Match_columns 1133
No_of_seqs 395 out of 1274
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 17:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 99.9 3.7E-23 8.1E-28 202.7 15.0 125 67-193 2-134 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 99.9 4.1E-23 8.8E-28 202.2 13.7 121 69-190 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 99.9 5.5E-22 1.2E-26 194.6 14.1 123 67-194 4-139 (139)
4 cd03773 MATH_TRIM37 Tripartite 99.9 1.2E-21 2.5E-26 189.7 12.9 120 66-190 3-130 (132)
5 COG5077 Ubiquitin carboxyl-ter 99.9 1.3E-22 2.7E-27 237.3 5.3 242 64-349 35-287 (1089)
6 cd03776 MATH_TRAF6 Tumor Necro 99.9 7.7E-22 1.7E-26 196.0 10.0 123 68-190 1-147 (147)
7 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.3E-21 2.8E-26 193.3 10.9 122 68-189 1-148 (149)
8 cd03781 MATH_TRAF4 Tumor Necro 99.8 4.8E-21 1E-25 192.6 12.4 122 68-189 1-153 (154)
9 cd03780 MATH_TRAF5 Tumor Necro 99.8 2.6E-20 5.7E-25 187.4 12.5 122 68-189 1-147 (148)
10 cd03777 MATH_TRAF3 Tumor Necro 99.8 4.8E-20 1E-24 191.8 13.7 126 65-190 36-184 (186)
11 cd00121 MATH MATH (meprin and 99.8 1.1E-19 2.3E-24 168.6 14.4 123 68-190 1-126 (126)
12 cd03779 MATH_TRAF1 Tumor Necro 99.8 7.8E-20 1.7E-24 184.0 12.1 122 68-189 1-146 (147)
13 cd03771 MATH_Meprin Meprin fam 99.7 1.3E-17 2.8E-22 171.3 13.4 122 68-189 2-166 (167)
14 PF00917 MATH: MATH domain; I 99.7 6E-18 1.3E-22 158.0 8.8 115 74-191 1-119 (119)
15 cd03778 MATH_TRAF2 Tumor Necro 99.7 2.3E-16 5E-21 161.6 12.8 125 65-189 16-163 (164)
16 smart00061 MATH meprin and TRA 99.6 5.4E-15 1.2E-19 132.7 10.5 93 70-168 2-95 (95)
17 cd03783 MATH_Meprin_Alpha Mepr 99.4 2.5E-12 5.5E-17 132.3 10.4 121 69-189 3-166 (167)
18 cd03782 MATH_Meprin_Beta Mepri 99.3 8.9E-12 1.9E-16 128.0 10.3 121 69-189 3-166 (167)
19 KOG1863 Ubiquitin carboxyl-ter 99.3 2.6E-12 5.7E-17 163.0 5.7 235 67-347 26-273 (1093)
20 KOG1987 Speckle-type POZ prote 97.7 0.00015 3.3E-09 79.8 10.4 116 70-194 6-128 (297)
21 PHA03098 kelch-like protein; P 96.8 0.00025 5.4E-09 84.1 -1.1 134 264-419 7-154 (534)
22 PHA02713 hypothetical protein; 96.7 0.00054 1.2E-08 82.8 1.1 132 265-421 24-174 (557)
23 KOG4364 Chromatin assembly fac 96.3 0.012 2.5E-07 71.6 8.8 7 499-505 380-386 (811)
24 KOG1029 Endocytic adaptor prot 96.3 0.012 2.6E-07 72.3 8.9 40 398-437 313-353 (1118)
25 KOG2412 Nuclear-export-signal 96.2 0.053 1.1E-06 65.1 13.0 53 416-468 211-264 (591)
26 KOG4364 Chromatin assembly fac 95.9 0.075 1.6E-06 64.9 12.9 14 493-506 378-391 (811)
27 PTZ00121 MAEBL; Provisional 95.9 0.048 1E-06 70.8 11.4 7 30-36 575-581 (2084)
28 PTZ00266 NIMA-related protein 95.6 0.13 2.8E-06 66.8 14.3 7 976-982 868-874 (1021)
29 PTZ00121 MAEBL; Provisional 95.6 0.074 1.6E-06 69.3 11.7 8 272-279 986-993 (2084)
30 KOG0163 Myosin class VI heavy 95.2 0.081 1.8E-06 65.3 9.9 33 418-450 927-959 (1259)
31 PHA02790 Kelch-like protein; P 95.0 0.0069 1.5E-07 72.0 0.3 136 262-420 18-172 (480)
32 PTZ00266 NIMA-related protein 94.0 0.21 4.6E-06 64.8 10.0 14 967-980 893-906 (1021)
33 KOG4350 Uncharacterized conser 93.4 0.091 2E-06 61.4 4.8 91 231-349 32-133 (620)
34 KOG0345 ATP-dependent RNA heli 93.3 0.15 3.3E-06 60.8 6.5 16 336-351 436-451 (567)
35 KOG2412 Nuclear-export-signal 92.9 0.77 1.7E-05 55.7 11.5 15 285-299 65-79 (591)
36 PRK00247 putative inner membra 92.6 0.98 2.1E-05 54.0 11.9 15 285-300 112-126 (429)
37 KOG1029 Endocytic adaptor prot 92.5 0.46 1E-05 59.2 9.1 9 834-842 857-865 (1118)
38 PRK00247 putative inner membra 92.4 0.67 1.5E-05 55.3 10.3 20 319-338 247-268 (429)
39 KOG4441 Proteins containing BT 92.3 0.039 8.5E-07 67.5 0.0 137 264-423 34-187 (571)
40 PF05262 Borrelia_P83: Borreli 92.3 0.57 1.2E-05 56.7 9.6 17 227-243 81-97 (489)
41 PF05262 Borrelia_P83: Borreli 92.2 0.91 2E-05 55.0 11.1 11 134-144 9-19 (489)
42 KOG0163 Myosin class VI heavy 91.9 1.9 4.1E-05 54.1 13.2 12 232-243 648-659 (1259)
43 KOG2072 Translation initiation 91.3 1.8 3.8E-05 54.8 12.3 23 384-406 743-765 (988)
44 KOG0297 TNF receptor-associate 90.8 0.16 3.4E-06 59.8 2.8 77 65-141 277-365 (391)
45 KOG2891 Surface glycoprotein [ 90.6 2.7 5.7E-05 47.6 11.8 27 449-475 387-414 (445)
46 KOG2072 Translation initiation 89.9 3.1 6.8E-05 52.7 12.7 28 406-433 757-785 (988)
47 KOG3054 Uncharacterized conser 89.7 1.2 2.6E-05 49.6 8.1 38 531-574 213-250 (299)
48 PF00651 BTB: BTB/POZ domain; 89.7 0.037 8E-07 51.6 -2.9 32 265-296 9-44 (111)
49 CHL00118 atpG ATP synthase CF0 89.2 3.7 8E-05 42.4 10.9 30 410-439 49-78 (156)
50 PF07946 DUF1682: Protein of u 89.2 0.98 2.1E-05 51.8 7.5 8 180-187 110-117 (321)
51 PF07946 DUF1682: Protein of u 88.9 0.92 2E-05 52.1 6.9 15 380-394 234-248 (321)
52 TIGR03321 alt_F1F0_F0_B altern 88.8 3.5 7.6E-05 45.6 11.1 50 387-437 10-59 (246)
53 PRK13428 F0F1 ATP synthase sub 88.7 2.8 6E-05 50.4 11.0 48 389-437 8-55 (445)
54 KOG2002 TPR-containing nuclear 88.3 3.3 7.3E-05 53.3 11.6 14 382-395 784-797 (1018)
55 KOG2891 Surface glycoprotein [ 88.3 1.9 4.1E-05 48.7 8.5 15 159-174 127-141 (445)
56 KOG2002 TPR-containing nuclear 87.9 7.9 0.00017 50.2 14.4 9 212-220 639-647 (1018)
57 PRK14474 F0F1 ATP synthase sub 87.0 4.6 9.9E-05 45.1 10.7 43 388-433 11-55 (250)
58 PRK14471 F0F1 ATP synthase sub 86.9 6.1 0.00013 40.9 10.9 29 410-438 35-63 (164)
59 PRK14472 F0F1 ATP synthase sub 86.9 6.1 0.00013 41.5 11.0 53 385-438 21-73 (175)
60 PRK09174 F0F1 ATP synthase sub 86.9 5.1 0.00011 43.6 10.7 55 384-439 55-109 (204)
61 PRK13454 F0F1 ATP synthase sub 86.7 5.3 0.00012 42.4 10.5 53 384-437 33-85 (181)
62 PRK13453 F0F1 ATP synthase sub 86.6 6.4 0.00014 41.4 11.0 52 386-438 22-73 (173)
63 PRK06231 F0F1 ATP synthase sub 86.2 6.7 0.00015 42.6 11.1 51 385-436 51-101 (205)
64 PRK08475 F0F1 ATP synthase sub 86.1 6.5 0.00014 41.3 10.7 51 385-438 25-77 (167)
65 PRK07352 F0F1 ATP synthase sub 85.5 8.2 0.00018 40.5 11.1 49 388-437 25-73 (174)
66 PRK13455 F0F1 ATP synthase sub 84.9 6.2 0.00014 41.7 10.0 48 389-439 33-83 (184)
67 PF06098 Radial_spoke_3: Radia 84.8 9.9 0.00021 43.7 12.1 61 386-447 130-195 (291)
68 PRK07353 F0F1 ATP synthase sub 84.8 10 0.00022 38.1 11.0 31 409-439 31-61 (140)
69 KOG3809 Microtubule-binding pr 84.8 3.3 7.2E-05 49.3 8.4 12 383-394 101-112 (583)
70 PRK13460 F0F1 ATP synthase sub 84.2 11 0.00024 39.5 11.4 52 385-437 19-70 (173)
71 PRK06569 F0F1 ATP synthase sub 84.0 16 0.00034 38.6 12.2 58 385-443 13-70 (155)
72 PRK14475 F0F1 ATP synthase sub 84.0 9.6 0.00021 39.9 10.7 31 409-439 36-66 (167)
73 CHL00019 atpF ATP synthase CF0 83.9 10 0.00022 40.3 11.0 50 388-438 30-79 (184)
74 KOG3054 Uncharacterized conser 83.5 4.4 9.4E-05 45.4 8.2 14 416-429 116-129 (299)
75 PRK14473 F0F1 ATP synthase sub 83.3 11 0.00023 39.2 10.7 29 410-438 35-63 (164)
76 PRK09510 tolA cell envelope in 82.8 7.1 0.00015 46.4 10.2 9 507-515 259-267 (387)
77 KOG2357 Uncharacterized conser 82.7 10 0.00022 45.3 11.1 26 165-190 189-219 (440)
78 COG3064 TolA Membrane protein 82.4 4.5 9.7E-05 46.6 8.0 10 417-426 100-109 (387)
79 PF09727 CortBP2: Cortactin-bi 82.3 11 0.00025 40.9 10.6 38 379-432 90-127 (192)
80 PRK08476 F0F1 ATP synthase sub 81.5 16 0.00034 37.5 10.9 30 409-438 33-62 (141)
81 PRK06568 F0F1 ATP synthase sub 80.9 14 0.00031 38.8 10.5 49 388-439 10-60 (154)
82 COG4499 Predicted membrane pro 80.9 3 6.4E-05 49.2 6.1 19 87-105 48-71 (434)
83 PF07888 CALCOCO1: Calcium bin 80.5 71 0.0015 39.9 17.6 62 458-520 430-494 (546)
84 PRK13461 F0F1 ATP synthase sub 80.4 20 0.00043 37.0 11.4 47 386-433 9-55 (159)
85 smart00225 BTB Broad-Complex, 79.8 0.37 8E-06 41.9 -1.2 75 268-350 1-86 (90)
86 COG3064 TolA Membrane protein 79.3 7 0.00015 45.1 8.2 12 463-474 178-189 (387)
87 TIGR01144 ATP_synt_b ATP synth 78.7 21 0.00046 36.1 10.8 36 393-433 10-45 (147)
88 KOG0742 AAA+-type ATPase [Post 78.3 22 0.00048 42.9 12.0 18 285-302 10-27 (630)
89 KOG1103 Predicted coiled-coil 78.2 9.5 0.00021 44.5 8.9 17 575-591 316-332 (561)
90 PRK05759 F0F1 ATP synthase sub 76.8 26 0.00056 35.8 10.9 23 411-433 32-54 (156)
91 KOG4848 Extracellular matrix-a 76.6 22 0.00048 38.8 10.5 17 440-456 198-214 (225)
92 KOG2963 RNA-binding protein re 76.4 3.9 8.5E-05 47.6 5.3 10 233-242 207-216 (405)
93 PF10211 Ax_dynein_light: Axon 76.0 45 0.00097 36.0 12.8 46 379-424 76-121 (189)
94 cd02666 Peptidase_C19J A subfa 75.8 0.92 2E-05 52.6 0.2 34 213-255 1-34 (343)
95 KOG3915 Transcription regulato 75.4 22 0.00048 43.0 11.0 16 404-419 513-528 (641)
96 KOG0556 Aspartyl-tRNA syntheta 74.2 3.5 7.6E-05 49.0 4.2 20 502-522 68-87 (533)
97 KOG1924 RhoA GTPase effector D 73.8 9.3 0.0002 48.6 7.8 19 389-411 975-993 (1102)
98 KOG4786 Ubinuclein, nuclear pr 73.8 2.6 5.6E-05 52.5 3.2 78 402-479 674-754 (1136)
99 KOG4691 Uncharacterized conser 73.4 23 0.0005 38.7 9.6 23 428-450 122-144 (227)
100 KOG2357 Uncharacterized conser 72.8 19 0.00042 43.1 9.7 26 318-345 262-293 (440)
101 TIGR02794 tolA_full TolA prote 72.7 18 0.00039 42.5 9.5 7 400-406 95-101 (346)
102 PF06936 Selenoprotein_S: Sele 72.3 21 0.00046 38.8 9.2 27 381-407 32-58 (190)
103 KOG0345 ATP-dependent RNA heli 72.0 6.1 0.00013 47.9 5.6 41 381-424 451-495 (567)
104 PRK14474 F0F1 ATP synthase sub 71.9 51 0.0011 37.0 12.5 20 388-407 15-34 (250)
105 KOG4031 Vesicle coat protein c 71.9 15 0.00032 40.4 7.9 23 414-436 113-136 (216)
106 PF09756 DDRGK: DDRGK domain; 71.7 1.3 2.7E-05 47.8 0.0 23 450-472 36-58 (188)
107 COG5269 ZUO1 Ribosome-associat 71.1 28 0.0006 39.9 10.0 59 368-428 184-243 (379)
108 KOG0112 Large RNA-binding prot 70.4 5 0.00011 51.4 4.6 14 500-513 782-795 (975)
109 PTZ00234 variable surface prot 69.9 6.2 0.00013 47.5 5.1 27 825-851 341-375 (433)
110 PRK09174 F0F1 ATP synthase sub 69.5 69 0.0015 35.1 12.5 22 389-410 64-85 (204)
111 PF15236 CCDC66: Coiled-coil d 69.4 22 0.00048 37.7 8.4 22 418-439 81-102 (157)
112 CHL00118 atpG ATP synthase CF0 68.3 53 0.0011 34.1 10.9 10 340-349 38-47 (156)
113 PRK09173 F0F1 ATP synthase sub 68.1 45 0.00098 34.5 10.3 30 409-438 28-57 (159)
114 TIGR03321 alt_F1F0_F0_B altern 68.1 69 0.0015 35.6 12.5 14 388-401 15-28 (246)
115 KOG2192 PolyC-binding hnRNP-K 66.9 27 0.00058 39.8 8.8 102 978-1091 183-288 (390)
116 COG0711 AtpF F0F1-type ATP syn 66.9 92 0.002 32.7 12.4 29 408-436 31-59 (161)
117 PF06098 Radial_spoke_3: Radia 66.7 36 0.00077 39.3 10.0 62 404-465 158-221 (291)
118 PF06936 Selenoprotein_S: Sele 66.3 24 0.00051 38.5 8.1 15 401-415 75-89 (190)
119 PRK13454 F0F1 ATP synthase sub 66.1 40 0.00086 36.0 9.7 26 386-411 39-64 (181)
120 PF06658 DUF1168: Protein of u 64.9 44 0.00095 35.0 9.4 19 440-458 85-103 (142)
121 PF06637 PV-1: PV-1 protein (P 64.8 65 0.0014 38.5 11.6 61 395-455 286-351 (442)
122 KOG2505 Ankyrin repeat protein 64.7 11 0.00025 45.8 5.8 14 109-122 177-190 (591)
123 PRK13460 F0F1 ATP synthase sub 64.5 1.1E+02 0.0023 32.3 12.4 24 386-409 24-47 (173)
124 PF00430 ATP-synt_B: ATP synth 63.9 22 0.00047 34.9 6.8 33 392-429 13-45 (132)
125 PRK13461 F0F1 ATP synthase sub 63.7 1.2E+02 0.0026 31.3 12.5 19 389-407 16-34 (159)
126 PRK14472 F0F1 ATP synthase sub 63.7 1.1E+02 0.0025 32.1 12.5 18 389-406 29-46 (175)
127 KOG3915 Transcription regulato 62.5 68 0.0015 39.1 11.4 15 417-431 535-549 (641)
128 PRK13453 F0F1 ATP synthase sub 62.2 1.3E+02 0.0027 31.9 12.4 23 385-407 25-47 (173)
129 KOG2341 TATA box binding prote 62.0 9.8 0.00021 47.0 4.8 33 393-425 408-440 (563)
130 KOG0742 AAA+-type ATPase [Post 61.8 82 0.0018 38.5 11.8 7 339-345 76-82 (630)
131 PF11208 DUF2992: Protein of u 60.7 26 0.00055 36.2 6.8 45 413-457 85-129 (132)
132 KOG0783 Uncharacterized conser 60.6 5 0.00011 51.2 2.0 49 337-394 791-844 (1267)
133 PRK00409 recombination and DNA 60.5 50 0.0011 42.8 10.8 16 287-302 410-425 (782)
134 PF10500 SR-25: Nuclear RNA-sp 60.0 11 0.00024 41.7 4.3 9 498-506 156-164 (225)
135 KOG0949 Predicted helicase, DE 60.0 19 0.00041 47.3 6.8 19 407-425 862-880 (1330)
136 PF10147 CR6_interact: Growth 59.7 1.7E+02 0.0037 32.7 13.2 13 440-452 187-199 (217)
137 PF08229 SHR3_chaperone: ER me 59.3 7.8 0.00017 42.2 3.0 10 416-425 161-170 (196)
138 KOG2689 Predicted ubiquitin re 58.6 17 0.00038 41.4 5.6 8 411-418 100-107 (290)
139 KOG3634 Troponin [Cytoskeleton 58.4 19 0.00042 42.0 6.0 31 420-450 85-115 (361)
140 KOG1363 Predicted regulator of 57.6 29 0.00062 42.4 7.6 11 233-243 146-156 (460)
141 PF08229 SHR3_chaperone: ER me 56.1 7.6 0.00016 42.3 2.3 15 407-421 156-170 (196)
142 COG4499 Predicted membrane pro 55.8 11 0.00024 44.8 3.6 33 390-425 344-376 (434)
143 KOG2341 TATA box binding prote 55.8 35 0.00076 42.5 7.9 27 418-444 430-456 (563)
144 PRK00409 recombination and DNA 54.8 62 0.0013 42.0 10.3 9 160-168 288-296 (782)
145 PRK08475 F0F1 ATP synthase sub 54.6 1.3E+02 0.0028 31.8 10.9 10 340-349 38-47 (167)
146 PF04696 Pinin_SDK_memA: pinin 54.3 1.7E+02 0.0037 30.0 11.4 10 385-394 8-17 (131)
147 PF12037 DUF3523: Domain of un 53.9 1.6E+02 0.0034 34.1 12.1 12 405-416 109-120 (276)
148 PRK07352 F0F1 ATP synthase sub 53.8 2.1E+02 0.0046 30.1 12.5 22 385-406 26-47 (174)
149 PHA00451 protein kinase 53.4 32 0.0007 39.5 6.6 8 418-425 232-239 (362)
150 PRK14473 F0F1 ATP synthase sub 53.3 2.3E+02 0.005 29.5 12.5 22 389-410 19-40 (164)
151 PRK13428 F0F1 ATP synthase sub 52.8 93 0.002 37.8 10.8 19 389-407 12-30 (445)
152 KOG3859 Septins (P-loop GTPase 52.6 78 0.0017 36.9 9.4 15 405-419 318-332 (406)
153 KOG1962 B-cell receptor-associ 51.8 1.2E+02 0.0026 33.9 10.4 20 396-416 110-129 (216)
154 PRK06231 F0F1 ATP synthase sub 51.8 1.4E+02 0.003 32.7 10.9 14 337-350 61-74 (205)
155 KOG3654 Uncharacterized CH dom 51.8 27 0.00058 42.7 5.9 26 217-243 190-215 (708)
156 PRK14471 F0F1 ATP synthase sub 51.4 1.5E+02 0.0033 30.8 10.8 20 391-410 21-40 (164)
157 PF01086 Clathrin_lg_ch: Clath 51.4 19 0.00041 39.8 4.5 15 415-429 120-134 (225)
158 KOG1150 Predicted molecular ch 51.2 37 0.00081 37.5 6.4 42 440-481 168-212 (250)
159 KOG3654 Uncharacterized CH dom 51.2 22 0.00047 43.4 5.1 15 453-467 430-444 (708)
160 KOG4715 SWI/SNF-related matrix 50.8 79 0.0017 37.0 9.1 41 501-545 343-383 (410)
161 KOG2689 Predicted ubiquitin re 50.5 84 0.0018 36.2 9.2 25 407-431 100-124 (290)
162 KOG1363 Predicted regulator of 50.3 52 0.0011 40.3 8.1 7 493-499 382-388 (460)
163 KOG4661 Hsp27-ERE-TATA-binding 50.3 79 0.0017 39.4 9.5 29 455-484 666-694 (940)
164 KOG2007 Cysteinyl-tRNA synthet 50.0 70 0.0015 39.6 9.0 47 391-438 491-537 (586)
165 KOG3088 Secretory carrier memb 49.8 19 0.00041 41.4 4.1 23 450-472 70-92 (313)
166 PRK07353 F0F1 ATP synthase sub 49.3 1.9E+02 0.0042 29.0 10.9 18 392-409 19-36 (140)
167 PF02731 SKIP_SNW: SKIP/SNW do 49.2 43 0.00094 35.6 6.4 20 379-399 88-107 (158)
168 PF08243 SPT2: SPT2 chromatin 49.1 24 0.00053 35.5 4.4 38 402-439 73-110 (116)
169 PRK08476 F0F1 ATP synthase sub 49.1 1.9E+02 0.0041 29.8 10.9 15 392-406 21-35 (141)
170 KOG4001 Axonemal dynein light 48.9 1.2E+02 0.0025 33.8 9.6 51 404-454 166-216 (259)
171 TIGR01069 mutS2 MutS2 family p 48.7 2E+02 0.0044 37.5 13.4 15 89-103 183-197 (771)
172 KOG0343 RNA Helicase [RNA proc 48.3 46 0.00099 41.6 7.2 8 297-304 512-519 (758)
173 PRK05759 F0F1 ATP synthase sub 48.0 3.2E+02 0.007 27.9 12.4 18 392-409 18-35 (156)
174 KOG0066 eIF2-interacting prote 46.8 37 0.00081 41.4 6.1 19 603-621 635-653 (807)
175 cd02664 Peptidase_C19H A subfa 46.3 10 0.00023 43.1 1.6 33 215-256 1-33 (327)
176 cd02659 peptidase_C19C A subfa 46.2 7.6 0.00016 43.6 0.4 34 212-254 1-34 (334)
177 KOG2441 mRNA splicing factor/p 46.1 63 0.0014 38.8 7.6 20 379-399 261-280 (506)
178 KOG1772 Vacuolar H+-ATPase V1 45.8 61 0.0013 32.6 6.4 24 441-464 26-49 (108)
179 KOG1015 Transcription regulato 45.7 17 0.00038 47.4 3.4 54 419-472 549-615 (1567)
180 KOG0681 Actin-related protein 45.4 30 0.00064 42.9 5.1 20 399-418 351-370 (645)
181 COG5644 Uncharacterized conser 45.4 58 0.0013 40.6 7.4 29 412-444 373-401 (869)
182 TIGR01069 mutS2 MutS2 family p 45.3 1.7E+02 0.0036 38.2 11.9 16 287-302 405-420 (771)
183 KOG3634 Troponin [Cytoskeleton 44.8 94 0.002 36.6 8.6 8 607-614 202-209 (361)
184 PF15346 ARGLU: Arginine and g 44.6 3.8E+02 0.0082 28.6 12.3 18 465-482 100-117 (149)
185 KOG3756 Pinin (desmosome-assoc 43.5 2.7E+02 0.0059 32.8 11.9 42 385-429 140-182 (340)
186 PF12757 DUF3812: Protein of u 43.5 54 0.0012 33.4 5.9 17 409-425 75-91 (126)
187 KOG2635 Medium subunit of clat 43.4 55 0.0012 39.8 6.7 34 386-423 103-137 (512)
188 PRK04863 mukB cell division pr 43.3 1.9E+02 0.004 40.5 12.4 41 377-417 941-983 (1486)
189 KOG4657 Uncharacterized conser 43.2 4.3E+02 0.0093 30.0 12.9 37 402-438 62-100 (246)
190 CHL00019 atpF ATP synthase CF0 43.1 2.4E+02 0.0052 30.1 10.9 11 339-349 39-49 (184)
191 COG5374 Uncharacterized conser 42.9 99 0.0021 33.7 7.9 68 412-479 116-191 (192)
192 smart00784 SPT2 SPT2 chromatin 42.5 42 0.0009 33.9 4.8 36 403-438 69-104 (111)
193 KOG0288 WD40 repeat protein Ti 42.3 1.1E+02 0.0024 37.0 8.9 14 486-499 118-131 (459)
194 KOG3878 Protein involved in ma 42.0 2.5E+02 0.0053 33.4 11.3 15 337-351 61-75 (469)
195 PF15066 CAGE1: Cancer-associa 41.8 2.5E+02 0.0054 34.7 11.7 39 439-477 484-522 (527)
196 KOG4571 Activating transcripti 41.6 1.1E+02 0.0025 35.4 8.6 52 407-459 242-293 (294)
197 PF09831 DUF2058: Uncharacteri 41.5 44 0.00095 36.1 5.1 8 432-439 14-21 (177)
198 KOG0112 Large RNA-binding prot 39.3 28 0.00061 45.1 3.8 19 498-516 784-803 (975)
199 PF12569 NARP1: NMDA receptor- 39.1 24 0.00052 43.6 3.2 17 225-241 125-141 (517)
200 PF00430 ATP-synt_B: ATP synth 38.5 99 0.0021 30.3 6.8 15 403-417 35-49 (132)
201 PHA03247 large tegument protei 38.5 1.2E+03 0.026 35.1 18.4 10 289-298 2226-2235(3151)
202 PF09731 Mitofilin: Mitochondr 38.4 5.9E+02 0.013 31.7 14.9 34 375-411 253-286 (582)
203 PRK06569 F0F1 ATP synthase sub 38.3 4.2E+02 0.009 28.3 11.5 12 396-407 28-39 (155)
204 KOG1265 Phospholipase C [Lipid 38.0 2.2E+02 0.0047 37.7 10.9 119 367-495 1024-1157(1189)
205 PRK11637 AmiB activator; Provi 37.7 3.4E+02 0.0073 32.6 12.3 9 528-536 314-322 (428)
206 cd02669 Peptidase_C19M A subfa 37.6 12 0.00025 44.8 0.2 37 210-255 116-152 (440)
207 COG4942 Membrane-bound metallo 37.2 6.4E+02 0.014 31.0 14.2 14 335-348 118-131 (420)
208 PF10186 Atg14: UV radiation r 37.2 6.1E+02 0.013 28.0 13.8 28 381-408 21-48 (302)
209 PF04889 Cwf_Cwc_15: Cwf15/Cwc 37.0 66 0.0014 36.3 5.9 7 418-424 150-156 (244)
210 TIGR00570 cdk7 CDK-activating 36.5 1.2E+02 0.0027 35.4 8.0 8 429-436 151-158 (309)
211 PF15236 CCDC66: Coiled-coil d 36.3 1.9E+02 0.0042 30.9 8.7 27 418-444 71-98 (157)
212 PF13904 DUF4207: Domain of un 36.2 2.1E+02 0.0045 32.6 9.7 10 388-397 87-96 (264)
213 PLN02316 synthase/transferase 36.2 78 0.0017 42.4 7.2 25 573-600 335-359 (1036)
214 COG5269 ZUO1 Ribosome-associat 36.0 2.3E+02 0.005 32.9 9.7 15 387-401 219-237 (379)
215 PF11861 DUF3381: Domain of un 35.7 81 0.0018 33.4 6.0 14 331-344 30-43 (159)
216 KOG1103 Predicted coiled-coil 35.6 1.6E+02 0.0035 34.9 8.7 13 457-469 222-234 (561)
217 cd03405 Band_7_HflC Band_7_Hfl 35.3 2E+02 0.0042 31.3 9.1 32 430-461 176-207 (242)
218 PF03879 Cgr1: Cgr1 family; I 35.0 4.6E+02 0.01 26.6 10.7 23 404-426 30-52 (108)
219 cd02661 Peptidase_C19E A subfa 34.6 24 0.00052 38.7 2.0 34 213-255 1-34 (304)
220 KOG4369 RTK signaling protein 33.6 26 0.00056 46.5 2.3 27 973-1000 1931-1957(2131)
221 KOG0717 Molecular chaperone (D 33.5 3.7E+02 0.008 33.4 11.4 16 410-425 196-211 (508)
222 KOG0783 Uncharacterized conser 33.5 17 0.00037 46.7 0.7 57 266-322 558-637 (1267)
223 KOG4673 Transcription factor T 33.3 1.5E+02 0.0033 38.0 8.5 37 401-437 416-452 (961)
224 PF05890 Ebp2: Eukaryotic rRNA 33.2 1.8E+02 0.0039 33.5 8.5 25 408-432 116-140 (271)
225 PF15086 UPF0542: Uncharacteri 33.2 61 0.0013 30.6 4.0 14 417-430 42-55 (74)
226 KOG2573 Ribosome biogenesis pr 33.1 31 0.00068 41.3 2.7 13 229-241 278-290 (498)
227 PF00769 ERM: Ezrin/radixin/mo 33.1 4.1E+02 0.0089 30.0 11.3 21 379-399 4-24 (246)
228 TIGR03319 YmdA_YtgF conserved 33.0 80 0.0017 39.1 6.2 20 569-588 189-208 (514)
229 KOG4591 Uncharacterized conser 32.7 16 0.00034 40.3 0.2 89 266-363 66-165 (280)
230 PRK12585 putative monovalent c 32.5 1E+02 0.0022 34.0 6.1 8 379-386 109-116 (197)
231 cd02668 Peptidase_C19L A subfa 32.4 19 0.00041 40.9 0.8 32 215-255 1-32 (324)
232 TIGR01933 hflK HflK protein. H 32.2 2.5E+02 0.0054 31.1 9.4 15 178-192 54-68 (261)
233 KOG2062 26S proteasome regulat 32.1 16 0.00035 46.4 0.3 18 440-457 793-810 (929)
234 cd02671 Peptidase_C19O A subfa 32.1 13 0.00028 43.0 -0.6 33 210-251 21-53 (332)
235 PF07543 PGA2: Protein traffic 32.0 1.3E+02 0.0027 31.5 6.5 25 396-424 26-50 (140)
236 COG5192 BMS1 GTP-binding prote 31.9 55 0.0012 41.0 4.4 29 440-468 1030-1058(1077)
237 PF05529 Bap31: B-cell recepto 31.9 2.9E+02 0.0064 29.4 9.5 14 386-399 108-121 (192)
238 KOG4739 Uncharacterized protei 31.7 3.8E+02 0.0082 30.4 10.5 10 598-607 220-229 (233)
239 KOG2457 A/G-specific adenine D 31.7 43 0.00092 40.1 3.4 21 966-986 443-463 (555)
240 cd03404 Band_7_HflK Band_7_Hfl 31.4 1.7E+02 0.0037 32.4 8.0 17 177-193 80-96 (266)
241 PF04747 DUF612: Protein of un 31.4 1.9E+02 0.0042 34.8 8.5 14 603-616 250-263 (510)
242 PF15295 CCDC50_N: Coiled-coil 31.3 4.9E+02 0.011 27.3 10.4 9 392-400 26-34 (132)
243 PF02029 Caldesmon: Caldesmon; 31.3 1.8E+02 0.004 36.0 8.8 7 594-600 429-435 (492)
244 KOG4722 Zn-finger protein [Gen 31.2 3.6E+02 0.0077 33.0 10.6 96 383-480 334-439 (672)
245 cd02657 Peptidase_C19A A subfa 31.2 24 0.00052 39.2 1.4 33 215-256 1-33 (305)
246 cd02658 Peptidase_C19B A subfa 31.1 18 0.0004 40.3 0.5 30 215-253 1-30 (311)
247 COG5493 Uncharacterized conser 30.8 5.4E+02 0.012 28.8 11.1 24 401-425 24-47 (231)
248 KOG2505 Ankyrin repeat protein 30.7 86 0.0019 38.8 5.8 14 176-189 289-303 (591)
249 PRK12704 phosphodiesterase; Pr 30.6 4.7E+02 0.01 32.7 12.1 20 569-588 195-214 (520)
250 KOG4657 Uncharacterized conser 30.6 6.4E+02 0.014 28.8 11.8 12 553-564 207-218 (246)
251 KOG1156 N-terminal acetyltrans 30.5 52 0.0011 41.7 4.0 32 441-472 584-615 (700)
252 KOG2484 GTPase [General functi 30.5 44 0.00095 40.3 3.3 18 575-593 226-243 (435)
253 COG4942 Membrane-bound metallo 30.4 3.2E+02 0.007 33.4 10.4 9 528-536 298-306 (420)
254 PRK12704 phosphodiesterase; Pr 30.3 2.8E+02 0.006 34.6 10.2 8 584-591 216-223 (520)
255 PRK07720 fliJ flagellar biosyn 30.2 6E+02 0.013 25.9 11.5 17 401-417 70-86 (146)
256 PF12999 PRKCSH-like: Glucosid 29.8 1.9E+02 0.0041 31.5 7.6 35 379-422 116-150 (176)
257 KOG2573 Ribosome biogenesis pr 29.7 58 0.0013 39.2 4.0 10 67-76 11-20 (498)
258 PF14235 DUF4337: Domain of un 29.5 2.3E+02 0.0051 30.0 8.1 27 442-468 80-106 (157)
259 COG2811 NtpF Archaeal/vacuolar 29.3 3.5E+02 0.0075 27.5 8.7 16 413-428 27-42 (108)
260 KOG0994 Extracellular matrix g 28.8 5.5E+02 0.012 35.3 12.4 20 380-399 1626-1645(1758)
261 KOG2270 Serine/threonine prote 28.7 41 0.00089 40.7 2.7 12 181-192 232-243 (520)
262 PF02029 Caldesmon: Caldesmon; 28.6 2.8E+02 0.006 34.6 9.6 29 494-522 369-398 (492)
263 KOG0343 RNA Helicase [RNA proc 28.1 96 0.0021 39.0 5.6 15 513-527 733-747 (758)
264 KOG2668 Flotillins [Intracellu 27.8 5.5E+02 0.012 31.0 11.2 41 432-472 292-333 (428)
265 KOG4055 Uncharacterized conser 27.6 3.8E+02 0.0081 29.6 9.2 10 428-437 121-130 (213)
266 KOG2962 Prohibitin-related mem 27.5 6.7E+02 0.014 28.7 11.3 32 417-448 213-244 (322)
267 PLN02850 aspartate-tRNA ligase 27.3 53 0.0011 40.8 3.4 19 889-907 302-321 (530)
268 PF05529 Bap31: B-cell recepto 27.3 3.9E+02 0.0084 28.5 9.5 6 389-394 105-110 (192)
269 KOG2007 Cysteinyl-tRNA synthet 27.0 1.1E+02 0.0024 38.1 5.7 6 95-100 56-61 (586)
270 PHA01750 hypothetical protein 26.7 2.5E+02 0.0053 26.3 6.6 28 391-419 17-44 (75)
271 PTZ00074 60S ribosomal protein 26.7 1.5E+02 0.0034 30.9 6.0 8 400-407 86-93 (135)
272 KOG4326 Mitochondrial F1F0-ATP 26.7 4.6E+02 0.0099 25.0 8.3 12 383-394 12-23 (81)
273 KOG2385 Uncharacterized conser 26.4 53 0.0011 40.7 3.1 43 390-434 568-610 (633)
274 PRK03963 V-type ATP synthase s 26.4 1.3E+02 0.0028 32.0 5.7 7 417-423 20-26 (198)
275 PRK05689 fliJ flagellar biosyn 25.8 6.5E+02 0.014 25.6 10.4 14 440-453 113-126 (147)
276 PF11214 Med2: Mediator comple 25.7 65 0.0014 32.3 3.1 7 453-459 93-99 (105)
277 PRK00106 hypothetical protein; 25.7 3.2E+02 0.007 34.3 9.6 25 610-634 242-267 (535)
278 KOG0338 ATP-dependent RNA heli 25.6 1.3E+02 0.0028 37.6 6.0 7 405-411 563-569 (691)
279 PHA02571 a-gt.4 hypothetical p 25.5 1.8E+02 0.0038 29.5 5.9 37 417-453 17-55 (109)
280 cd02667 Peptidase_C19K A subfa 25.4 30 0.00066 38.4 0.9 30 215-253 1-30 (279)
281 COG1422 Predicted membrane pro 25.1 61 0.0013 35.7 3.0 38 442-479 72-109 (201)
282 PF03538 VRP1: Salmonella viru 25.1 26 0.00057 40.9 0.3 48 971-1020 171-223 (325)
283 TIGR01147 V_ATP_synt_G vacuola 25.0 2.9E+02 0.0064 28.0 7.5 26 443-468 28-53 (113)
284 PTZ00491 major vault protein; 24.9 2.7E+02 0.0058 36.7 8.9 68 370-447 633-701 (850)
285 KOG4043 Uncharacterized conser 24.7 48 0.001 35.5 2.1 22 435-456 178-199 (214)
286 KOG2391 Vacuolar sorting prote 24.6 5.4E+02 0.012 30.8 10.4 48 402-449 210-260 (365)
287 PF12569 NARP1: NMDA receptor- 24.5 87 0.0019 38.9 4.5 21 444-464 413-433 (517)
288 PF05672 MAP7: MAP7 (E-MAP-115 24.4 1.7E+02 0.0037 31.7 6.1 19 415-433 33-51 (171)
289 PF05279 Asp-B-Hydro_N: Aspart 24.4 1.9E+02 0.0042 32.9 6.7 10 309-318 43-52 (243)
290 PF03154 Atrophin-1: Atrophin- 24.3 42 0.00091 44.0 1.9 7 824-830 828-834 (982)
291 KOG2223 Uncharacterized conser 24.2 1.6E+02 0.0035 36.1 6.4 7 518-524 356-362 (586)
292 PF12037 DUF3523: Domain of un 24.2 9.7E+02 0.021 28.0 12.3 32 378-409 61-93 (276)
293 PF12072 DUF3552: Domain of un 24.1 9.5E+02 0.021 26.1 12.1 19 392-410 18-36 (201)
294 PTZ00401 aspartyl-tRNA synthet 24.0 61 0.0013 40.5 3.1 19 889-907 290-309 (550)
295 TIGR03319 YmdA_YtgF conserved 24.0 6E+02 0.013 31.7 11.5 6 628-633 240-245 (514)
296 PF00443 UCH: Ubiquitin carbox 23.9 23 0.00049 37.2 -0.5 33 213-254 1-33 (269)
297 PF14738 PaaSYMP: Solute carri 23.8 3.8E+02 0.0082 28.5 8.4 27 384-417 75-101 (154)
298 PTZ00491 major vault protein; 23.7 1.3E+03 0.028 30.8 14.5 26 226-251 571-596 (850)
299 PF05384 DegS: Sensor protein 23.7 7.3E+02 0.016 26.6 10.5 33 393-425 65-101 (159)
300 PRK01005 V-type ATP synthase s 23.6 4E+02 0.0087 29.5 8.9 14 396-409 15-28 (207)
301 PLN02381 valyl-tRNA synthetase 23.5 91 0.002 41.9 4.7 60 429-490 16-75 (1066)
302 PF15295 CCDC50_N: Coiled-coil 23.5 2.2E+02 0.0048 29.8 6.4 6 315-320 7-12 (132)
303 KOG2572 Ribosome biogenesis pr 23.3 28 0.00061 41.7 0.1 11 272-282 290-300 (498)
304 COG5638 Uncharacterized conser 23.3 93 0.002 37.5 4.2 19 496-514 524-544 (622)
305 PF07763 FEZ: FEZ-like protein 23.2 4.6E+02 0.01 30.0 9.3 50 382-437 163-212 (244)
306 KOG0267 Microtubule severing p 23.1 3.1E+02 0.0067 35.6 8.7 59 784-842 498-565 (825)
307 KOG0949 Predicted helicase, DE 23.0 2.7E+02 0.0058 37.5 8.3 17 971-987 1279-1295(1330)
308 PF03879 Cgr1: Cgr1 family; I 22.9 3.6E+02 0.0077 27.4 7.5 29 399-427 33-61 (108)
309 cd07658 F-BAR_NOSTRIN The F-BA 22.9 1.1E+03 0.024 26.4 12.5 15 333-347 20-35 (239)
310 PTZ00436 60S ribosomal protein 22.7 5E+02 0.011 30.7 9.6 13 417-429 139-151 (357)
311 PF04568 IATP: Mitochondrial A 22.4 2.7E+02 0.0059 27.8 6.6 27 396-423 51-77 (100)
312 PRK07720 fliJ flagellar biosyn 22.4 8.3E+02 0.018 24.8 11.1 20 433-452 106-125 (146)
313 cd08045 TAF4 TATA Binding Prot 22.4 2.8E+02 0.006 30.4 7.4 11 336-346 49-59 (212)
314 PRK05689 fliJ flagellar biosyn 22.4 8.3E+02 0.018 24.8 11.7 69 402-470 71-139 (147)
315 KOG4709 Uncharacterized conser 22.2 2.8E+02 0.006 30.8 7.1 14 512-525 121-134 (217)
316 PLN03188 kinesin-12 family pro 21.9 7.7E+02 0.017 34.3 12.2 33 378-412 1090-1124(1320)
317 PRK04654 sec-independent trans 21.8 5.7E+02 0.012 28.8 9.5 38 380-429 23-60 (214)
318 PLN03237 DNA topoisomerase 2; 21.8 1.9E+02 0.0041 40.2 7.1 17 335-351 1060-1076(1465)
319 cd08045 TAF4 TATA Binding Prot 21.7 1.1E+03 0.023 25.9 11.9 10 415-424 114-123 (212)
320 PF08701 GN3L_Grn1: GNL3L/Grn1 21.6 2E+02 0.0043 27.5 5.3 15 417-431 45-59 (79)
321 TIGR02473 flagell_FliJ flagell 21.6 7.9E+02 0.017 24.3 11.4 12 402-413 68-79 (141)
322 PRK06991 ferredoxin; Provision 21.5 3.4E+02 0.0074 31.2 8.1 6 233-238 55-60 (270)
323 KOG0551 Hsp90 co-chaperone CNS 21.4 1E+03 0.022 28.9 11.8 12 507-518 263-274 (390)
324 PF09731 Mitofilin: Mitochondr 21.3 8.2E+02 0.018 30.5 12.0 9 231-239 119-127 (582)
325 PF10669 Phage_Gp23: Protein g 21.3 1.1E+02 0.0023 30.5 3.5 14 492-505 103-116 (121)
326 KOG2481 Protein required for n 20.8 1.9E+02 0.0041 36.1 6.1 30 440-469 535-564 (570)
327 KOG2153 Protein involved in th 20.5 2.2E+02 0.0047 36.5 6.7 19 330-348 318-336 (704)
328 KOG0926 DEAH-box RNA helicase 20.4 84 0.0018 41.0 3.3 29 415-443 33-61 (1172)
329 KOG0566 Inositol-1,4,5-triphos 20.4 6.9E+02 0.015 33.7 11.1 29 814-842 1015-1043(1080)
330 PRK12705 hypothetical protein; 20.3 2.5E+02 0.0054 35.1 7.2 57 569-634 183-240 (508)
331 PF11675 DUF3271: Protein of u 20.3 36 0.00078 38.3 0.2 48 974-1021 49-104 (249)
332 KOG1924 RhoA GTPase effector D 20.3 1.5E+02 0.0033 38.6 5.4 23 329-351 859-881 (1102)
333 PF05236 TAF4: Transcription i 20.1 68 0.0015 36.0 2.3 25 370-394 65-93 (264)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.90 E-value=3.7e-23 Score=202.68 Aligned_cols=125 Identities=26% Similarity=0.493 Sum_probs=105.6
Q ss_pred ccEEEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCCC----CCcEEEEEEEecCCCCCCCceEEEEEEEEEEeCC
Q 001169 67 YGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDV----CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRD 142 (1133)
Q Consensus 67 tGshtWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~~----~dyLSLYLeL~s~esl~p~WsV~AqFtfsLLNQd 142 (1133)
+++|+|+|.|||.+ ++.++|+.|.||||+|+|++||+|+.. .+||||||+|.... ..+.|.+.|+|+|+|+|+.
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 58999999999998 678999999999999999999999642 48999999997643 3347999999999999997
Q ss_pred CC-CceecccceecccCCCCcccccceeccccc---cCCccCCeEEEEEEEEEee
Q 001169 143 PK-KSKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 143 Gk-~S~skessh~Fs~ke~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIk 193 (1133)
+. ........|.|......|||.+||+|++|+ ++||+||+|+|+|+|+|-+
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 42 333334457887667899999999999995 6999999999999998754
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.89 E-value=4.1e-23 Score=202.21 Aligned_cols=121 Identities=32% Similarity=0.702 Sum_probs=103.5
Q ss_pred EEEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCcEEEEEEEecCCC----CCCCceEEEEEEEEEEeCC-C
Q 001169 69 KYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDK----LLPGWSHFAQFTIAVVNRD-P 143 (1133)
Q Consensus 69 shtWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~~~dyLSLYLeL~s~es----l~p~WsV~AqFtfsLLNQd-G 143 (1133)
+|+|+|+|||.+ ++.+.|++|.||||+|+|++||+|+...+||||||++.+... .+++|.|+|+|+|.|+|+. +
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~ 80 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDP 80 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCC
Confidence 599999999996 578999999999999999999999876789999999976443 2458999999999999994 4
Q ss_pred CCceecccceecccCCCCcccccceeccccc-------cCCccCCeEEEEEEEE
Q 001169 144 KKSKYSDTLHRFWKKEHDWGWKKFMELSKVS-------DGFKDGDTLIIKAQVQ 190 (1133)
Q Consensus 144 k~S~skessh~Fs~ke~dWGwskFIkrsdLE-------sGFLvDDsLTIeCdVt 190 (1133)
..+......|.|.....+|||.+||++++|+ +|||+||+|+|+|.|.
T Consensus 81 ~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 81 SIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred ccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 3333345578998767899999999999997 5999999999999873
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.87 E-value=5.5e-22 Score=194.64 Aligned_cols=123 Identities=28% Similarity=0.516 Sum_probs=103.1
Q ss_pred ccEEEEEEcCccccC---CCeeeCCceeecCe---EEEEEEEeCCCC--CCCcEEEEEEEecCCCCCCCceEEEEEEEEE
Q 001169 67 YGKYTWRIEKFSQIS---KRELRSNAFEVGGY---KWYILIYPQGCD--VCNHLSLFLCVANHDKLLPGWSHFAQFTIAV 138 (1133)
Q Consensus 67 tGshtWKIdNFS~LK---ge~I~Sp~FsVGGh---kWRI~vYPnG~~--~~dyLSLYLeL~s~esl~p~WsV~AqFtfsL 138 (1133)
..+|+|+|+|||.++ ++.+.|++|.+||| +|+|++||+|.. ..+||||||++.... .|.++|+|+|.|
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~l 79 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI 79 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEEE
Confidence 468999999999875 57899999999995 999999999974 368999999997532 467999999999
Q ss_pred EeCCCCCce--ecccceecccCCCCcccccceeccccc---cCCccCCeEEEEEEEEEeee
Q 001169 139 VNRDPKKSK--YSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIRE 194 (1133)
Q Consensus 139 LNQdGk~S~--skessh~Fs~ke~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd 194 (1133)
+|+++.... .....+.|.. ..+|||.+||++++|+ ++||+||+|+|+|+|+|+++
T Consensus 80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 999876432 1224577865 5789999999999996 58999999999999999863
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.86 E-value=1.2e-21 Score=189.71 Aligned_cols=120 Identities=27% Similarity=0.512 Sum_probs=101.6
Q ss_pred cccEEEEEEcCccccC--CCeeeCCceeecCeEEEEEEEeCCCCC--CCcEEEEEEEecCCCCCCCceEEEEEEEEEEeC
Q 001169 66 LYGKYTWRIEKFSQIS--KRELRSNAFEVGGYKWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNR 141 (1133)
Q Consensus 66 ~tGshtWKIdNFS~LK--ge~I~Sp~FsVGGhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl~p~WsV~AqFtfsLLNQ 141 (1133)
...+++|+|.|||.++ ++.+.|+.|.+|||+|+|++||+|... .+||||||++.... .|.+.++|+|+|+|+
T Consensus 3 ~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~----~~~~~~~~~l~llnq 78 (132)
T cd03773 3 PYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL----GEASKYEYRVEMVHQ 78 (132)
T ss_pred CCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC----CCceeEEEEEEEEcC
Confidence 5678999999999985 578999999999999999999999753 68999999987642 467889999999999
Q ss_pred -CCCCceecccceecccCCCCcccccceeccccc-cCCccC--CeEEEEEEEE
Q 001169 142 -DPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVS-DGFKDG--DTLIIKAQVQ 190 (1133)
Q Consensus 142 -dGk~S~skessh~Fs~ke~dWGwskFIkrsdLE-sGFLvD--DsLTIeCdVt 190 (1133)
++..+......+.|.. ..+|||.+||++++|+ +|||+| |+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 79 ANPTKNIKREFASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCccceEEeccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 4444443445677865 5779999999999998 799999 9999999996
No 5
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-22 Score=237.30 Aligned_cols=242 Identities=25% Similarity=0.459 Sum_probs=189.3
Q ss_pred cccccEEEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCcEEEEEEEecCCCC--C-CCceEEEEEEEEEEe
Q 001169 64 SELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKL--L-PGWSHFAQFTIAVVN 140 (1133)
Q Consensus 64 s~~tGshtWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~~~dyLSLYLeL~s~esl--~-p~WsV~AqFtfsLLN 140 (1133)
......|+|+|.+|+.+.+ .+.||.|.||||.|+|.++|.|+...+ +||||+....+.. . ..|.|+|+|.|.|-|
T Consensus 35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~~-~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~ 112 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQCN-VSVYLEYEPQELEETGGKYYDCCAQFAFDISN 112 (1089)
T ss_pred HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCccc-cEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence 3456789999999999875 588999999999999999999987655 9999998654211 1 249999999999988
Q ss_pred C-CCCCceecccceecccCCCCcccccceecccccc------CCccCCeEEEEEEEEEeeecCCCC-cccccccccceee
Q 001169 141 R-DPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD------GFKDGDTLIIKAQVQVIREKTDRP-FRCLDCQYRRELV 212 (1133)
Q Consensus 141 Q-dGk~S~skessh~Fs~ke~dWGwskFIkrsdLEs------GFLvDDsLTIeCdVtVIkd~~~~p-~r~l~~ds~ketV 212 (1133)
. ++.-.......|+|+....+|||.+||.+.+|.. .||.+|.+.|.+.|.|++++++.. +..+.|+++++++
T Consensus 113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTG 192 (1089)
T COG5077 113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETG 192 (1089)
T ss_pred CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeeccccccccccee
Confidence 6 3222223457799998889999999999998872 589999999999999999987754 3344899999999
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhhhhhHHHHH
Q 001169 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDS 292 (1133)
Q Consensus 213 ~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ffa~keVtSplvmd~ 292 (1133)
+|++.|+|+|| ||++|||+...+..||.....+.... -.+-|.+ ++..+.
T Consensus 193 YVGlrNqGATC---------YmNSLlQslffi~~FRk~Vy~ipTd~-----p~grdSV----------------alaLQr 242 (1089)
T COG5077 193 YVGLRNQGATC---------YMNSLLQSLFFIAKFRKDVYGIPTDH-----PRGRDSV----------------ALALQR 242 (1089)
T ss_pred eeeeccCCcee---------eHHHHHHHHHHHHHHHHHhhcCCCCC-----CCccchH----------------HHHHHH
Confidence 99999999999 99999999987777887666665221 0111222 677777
Q ss_pred HhhcccccccccccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCC
Q 001169 293 LYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPL 349 (1133)
Q Consensus 293 Lf~glk~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~L 349 (1133)
+|.-|+..+. -++|-||..++.|..-|.|. ..|+. -+.|+.-|.|
T Consensus 243 ~Fynlq~~~~----------PvdTteltrsfgWds~dsf~-QHDiq-EfnrVl~DnL 287 (1089)
T COG5077 243 LFYNLQTGEE----------PVDTTELTRSFGWDSDDSFM-QHDIQ-EFNRVLQDNL 287 (1089)
T ss_pred HHHHHhccCC----------CcchHHhhhhcCcccchHHH-HHhHH-HHHHHHHHHH
Confidence 7888877654 37888999898888777776 44666 5677766665
No 6
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.86 E-value=7.7e-22 Score=196.02 Aligned_cols=123 Identities=24% Similarity=0.454 Sum_probs=98.6
Q ss_pred cEEEEEEcCccccC-----CC--eeeCCceee--cCeEEEEEEEeCCCCC--CCcEEEEEEEecCCCC-CCCceEEEEEE
Q 001169 68 GKYTWRIEKFSQIS-----KR--ELRSNAFEV--GGYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtWKIdNFS~LK-----ge--~I~Sp~FsV--GGhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl-~p~WsV~AqFt 135 (1133)
|+|+|+|.|||.++ ++ .+.|+.|++ |||+|+|++||+|... .+||||||+|+....+ ...|.+.|+|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 68999999999764 23 488999985 7999999999999863 6899999999875432 23699999999
Q ss_pred EEEEeCCCCCc-ee-----cccceeccc-----CCCCcccccceeccccc-cCCccCCeEEEEEEEE
Q 001169 136 IAVVNRDPKKS-KY-----SDTLHRFWK-----KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQ 190 (1133)
Q Consensus 136 fsLLNQdGk~S-~s-----kessh~Fs~-----ke~dWGwskFIkrsdLE-sGFLvDDsLTIeCdVt 190 (1133)
|.|+||++... .. ....+.|.. ....|||.+||++++|+ .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999986422 11 112355753 24679999999999999 6899999999999984
No 7
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.86 E-value=1.3e-21 Score=193.29 Aligned_cols=122 Identities=28% Similarity=0.512 Sum_probs=99.4
Q ss_pred cEEEEEEcCccccC-------CCeeeCCceeec--CeEEEEEEEeCCCCC--CCcEEEEEEEecCCCC-CCCceEEEEEE
Q 001169 68 GKYTWRIEKFSQIS-------KRELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtWKIdNFS~LK-------ge~I~Sp~FsVG--GhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl-~p~WsV~AqFt 135 (1133)
|+|+|+|.|||.++ ++.+.|+.|.+| ||+|+|++||+|... .+||||||++++...+ ...|.+.|+|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 68999999999974 258999999999 999999999999743 6799999999876432 24799999999
Q ss_pred EEEEeCCCC---Cceecc-----cceecc-----cCCCCcccccceeccccc-cCCccCCeEEEEEEE
Q 001169 136 IAVVNRDPK---KSKYSD-----TLHRFW-----KKEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 fsLLNQdGk---~S~ske-----ssh~Fs-----~ke~dWGwskFIkrsdLE-sGFLvDDsLTIeCdV 189 (1133)
|+|+|+.+. .+.... ..+.|. ....+|||.+||++++|+ .+||+||+|+|+|+|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 999999763 221111 234564 135789999999999999 489999999999998
No 8
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.85 E-value=4.8e-21 Score=192.64 Aligned_cols=122 Identities=22% Similarity=0.415 Sum_probs=99.3
Q ss_pred cEEEEEEcCccccC-------CCeeeCCceeec--CeEEEEEEEeCCCCC--CCcEEEEEEEecCCCCC-CCceEEEEEE
Q 001169 68 GKYTWRIEKFSQIS-------KRELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKLL-PGWSHFAQFT 135 (1133)
Q Consensus 68 GshtWKIdNFS~LK-------ge~I~Sp~FsVG--GhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl~-p~WsV~AqFt 135 (1133)
|+|.|+|.|||.++ ++.+.|+.|++| ||+|+|++||+|... .+||||||+|+..+.+. ..|.+.++|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 68999999999875 257999999999 999999999999753 68999999998754332 3799999999
Q ss_pred EEEEeCCCCC-----cee-c----ccceeccc--------CCCCcccccceeccccc-cCCccCCeEEEEEEE
Q 001169 136 IAVVNRDPKK-----SKY-S----DTLHRFWK--------KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 fsLLNQdGk~-----S~s-k----essh~Fs~--------ke~dWGwskFIkrsdLE-sGFLvDDsLTIeCdV 189 (1133)
|+|+||.+.. ... . .....|.. ...+|||.+||++++|+ .+||+||+|+|+|+|
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 9999997641 110 0 11345552 24579999999999999 689999999999998
No 9
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.83 E-value=2.6e-20 Score=187.42 Aligned_cols=122 Identities=23% Similarity=0.405 Sum_probs=100.4
Q ss_pred cEEEEEEcCccccC-----CC--eeeCCce--eecCeEEEEEEEeCCCCC--CCcEEEEEEEecCCCC-CCCceEEEEEE
Q 001169 68 GKYTWRIEKFSQIS-----KR--ELRSNAF--EVGGYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtWKIdNFS~LK-----ge--~I~Sp~F--sVGGhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl-~p~WsV~AqFt 135 (1133)
|+|+|+|+|||+++ ++ .+.|+.| .+|||+|+|++||||... ++||||||+|+..+.+ ...|.+.++|+
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 68999999999986 24 7999999 899999999999999863 6799999999875332 23799999999
Q ss_pred EEEEeCCCCCce--e--c--ccceecccC----CCCcccccceecccccc---CCccCCeEEEEEEE
Q 001169 136 IAVVNRDPKKSK--Y--S--DTLHRFWKK----EHDWGWKKFMELSKVSD---GFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 fsLLNQdGk~S~--s--k--essh~Fs~k----e~dWGwskFIkrsdLEs---GFLvDDsLTIeCdV 189 (1133)
|.|+||++.+.. . . ...+.|... +..||+.+||++++|+. +||+||+|+|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999765321 1 1 124668654 45799999999999993 89999999999987
No 10
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.82 E-value=4.8e-20 Score=191.83 Aligned_cols=126 Identities=22% Similarity=0.392 Sum_probs=101.8
Q ss_pred ccccEEEEEEcCccccC-----CC--eeeCCceeec--CeEEEEEEEeCCCC--CCCcEEEEEEEecCCCC-CCCceEEE
Q 001169 65 ELYGKYTWRIEKFSQIS-----KR--ELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LK-----ge--~I~Sp~FsVG--GhkWRI~vYPnG~~--~~dyLSLYLeL~s~esl-~p~WsV~A 132 (1133)
...|+|+|+|.|||.++ ++ .+.|++|++| ||+|+|++||||.. .++||||||+|+.++.+ ...|.|.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 45799999999999875 23 7999999999 99999999999986 36799999999875432 23799999
Q ss_pred EEEEEEEeCCCCC-ce----e-cccceecc-cC---CCCcccccceeccccc-cCCccCCeEEEEEEEE
Q 001169 133 QFTIAVVNRDPKK-SK----Y-SDTLHRFW-KK---EHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQ 190 (1133)
Q Consensus 133 qFtfsLLNQdGk~-S~----s-kessh~Fs-~k---e~dWGwskFIkrsdLE-sGFLvDDsLTIeCdVt 190 (1133)
+|+|.|+||++.. .. . ....+.|. .. +..|||.+||++++|+ .+||+||+|+|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEe
Confidence 9999999997521 11 0 01235575 22 4579999999999999 6899999999999886
No 11
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.82 E-value=1.1e-19 Score=168.63 Aligned_cols=123 Identities=38% Similarity=0.694 Sum_probs=102.0
Q ss_pred cEEEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCCC-CCcEEEEEEEecCCCCCCCceEEEEEEEEEEeCCCCCc
Q 001169 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDV-CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKS 146 (1133)
Q Consensus 68 GshtWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~~-~dyLSLYLeL~s~esl~p~WsV~AqFtfsLLNQdGk~S 146 (1133)
++|+|+|.+|+...++.+.|+.|.++|+.|+|++||+|... .+||||||+|.........|.+.|+|+|.|+|+++.+.
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 47999999999866788999999999999999999998643 57999999998765433479999999999999985444
Q ss_pred eecccceecc-cCCCCcccccceeccccccCC-ccCCeEEEEEEEE
Q 001169 147 KYSDTLHRFW-KKEHDWGWKKFMELSKVSDGF-KDGDTLIIKAQVQ 190 (1133)
Q Consensus 147 ~skessh~Fs-~ke~dWGwskFIkrsdLEsGF-LvDDsLTIeCdVt 190 (1133)
......+.|. ....+|||.+||+|++|++.+ ++||+|+|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 81 LSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred ceEeccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 4443344453 446899999999999999655 9999999999984
No 12
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.81 E-value=7.8e-20 Score=184.04 Aligned_cols=122 Identities=25% Similarity=0.415 Sum_probs=99.0
Q ss_pred cEEEEEEcCccccC-----C--CeeeCCceeec--CeEEEEEEEeCCCCC--CCcEEEEEEEecCCCC-CCCceEEEEEE
Q 001169 68 GKYTWRIEKFSQIS-----K--RELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtWKIdNFS~LK-----g--e~I~Sp~FsVG--GhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl-~p~WsV~AqFt 135 (1133)
|+|+|+|.||++.. + ..++|+.|+.+ ||+|+|++||||... ++||||||+|+..+.+ ...|.|.++|+
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 68999999999753 2 36999999986 999999999999863 6799999999875321 23799999999
Q ss_pred EEEEeCCCCCcee--ccc---ceecc----cCCCCcccccceecccccc---CCccCCeEEEEEEE
Q 001169 136 IAVVNRDPKKSKY--SDT---LHRFW----KKEHDWGWKKFMELSKVSD---GFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 fsLLNQdGk~S~s--kes---sh~Fs----~ke~dWGwskFIkrsdLEs---GFLvDDsLTIeCdV 189 (1133)
|.|+||++.+... ... .+.|. ..+..|||.+||++++|+. +||+||+|+|+|+|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 9999998654321 111 36686 3345799999999999994 89999999999998
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.74 E-value=1.3e-17 Score=171.27 Aligned_cols=122 Identities=25% Similarity=0.508 Sum_probs=94.7
Q ss_pred cEEEEEEcCccccC-----CCeeeCCce-eecCeEEEEEEEeCCCC-CCCcEEEEEEEecCCCC-CCCce-EEEEEEEEE
Q 001169 68 GKYTWRIEKFSQIS-----KRELRSNAF-EVGGYKWYILIYPQGCD-VCNHLSLFLCVANHDKL-LPGWS-HFAQFTIAV 138 (1133)
Q Consensus 68 GshtWKIdNFS~LK-----ge~I~Sp~F-sVGGhkWRI~vYPnG~~-~~dyLSLYLeL~s~esl-~p~Ws-V~AqFtfsL 138 (1133)
.+|+|+|.|||.++ +..++|++| .+|||+|+|++||+|.. .++||||||+|+..+.+ ...|. +.|+|+|+|
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~L 81 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTL 81 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEE
Confidence 37999999999985 247999999 99999999999999976 46799999999876432 24688 689999999
Q ss_pred EeCCCC----Cceec----c----c----ceeccc-----------------CCCCcccccceeccccc-cCCccCCeEE
Q 001169 139 VNRDPK----KSKYS----D----T----LHRFWK-----------------KEHDWGWKKFMELSKVS-DGFKDGDTLI 184 (1133)
Q Consensus 139 LNQdGk----~S~sk----e----s----sh~Fs~-----------------ke~dWGwskFIkrsdLE-sGFLvDDsLT 184 (1133)
+||++. .+.+. . . ...|.. ...+|||..||++++|+ ..||+||+|.
T Consensus 82 lDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~dtl~ 161 (167)
T cd03771 82 LDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGDDLI 161 (167)
T ss_pred ECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCCEEE
Confidence 999631 11111 0 0 011221 23479999999999999 4699999999
Q ss_pred EEEEE
Q 001169 185 IKAQV 189 (1133)
Q Consensus 185 IeCdV 189 (1133)
|+++|
T Consensus 162 i~~~~ 166 (167)
T cd03771 162 ILLDF 166 (167)
T ss_pred EEEEe
Confidence 99986
No 14
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.73 E-value=6e-18 Score=157.97 Aligned_cols=115 Identities=29% Similarity=0.568 Sum_probs=94.9
Q ss_pred EcCccccCC--CeeeCCceeecCeEEEEEEEeCCCCCCCcEEEEEEEecCCCCC-CCceEEEEEEEEEEeCCCCCceecc
Q 001169 74 IEKFSQISK--RELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLL-PGWSHFAQFTIAVVNRDPKKSKYSD 150 (1133)
Q Consensus 74 IdNFS~LKg--e~I~Sp~FsVGGhkWRI~vYPnG~~~~dyLSLYLeL~s~esl~-p~WsV~AqFtfsLLNQdGk~S~ske 150 (1133)
|+|||.++. ..+.|+.|.+||++|+|.+||+|+ .+||++||+|....... ..|.|.|+|+|.|+++.+.......
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~--~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 78 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN--GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRI 78 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES--TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC--cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeee
Confidence 789999973 345558999999999999999986 67999999998875442 4899999999999999876522222
Q ss_pred cceecccCCCCcccccceeccccccC-CccCCeEEEEEEEEE
Q 001169 151 TLHRFWKKEHDWGWKKFMELSKVSDG-FKDGDTLIIKAQVQV 191 (1133)
Q Consensus 151 ssh~Fs~ke~dWGwskFIkrsdLEsG-FLvDDsLTIeCdVtV 191 (1133)
..+.|.. ..+|||.+||+|++|++. ||+||+|+|+|+|+|
T Consensus 79 ~~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 79 KSHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp ECEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred eeeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 2588876 488999999999999964 799999999999986
No 15
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.68 E-value=2.3e-16 Score=161.60 Aligned_cols=125 Identities=26% Similarity=0.416 Sum_probs=100.5
Q ss_pred ccccEEEEEEcCccccCC-------CeeeCCceee--cCeEEEEEEEeCCCCC--CCcEEEEEEEecCCCCC-CCceEEE
Q 001169 65 ELYGKYTWRIEKFSQISK-------RELRSNAFEV--GGYKWYILIYPQGCDV--CNHLSLFLCVANHDKLL-PGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LKg-------e~I~Sp~FsV--GGhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl~-p~WsV~A 132 (1133)
...|+|+|+|.||+.+.. ..++|+.|+. +||+|+|++||+|+.. +.||||||+++.++.+. ..|.+..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 457999999999998752 3699999986 5899999999999864 67999999999987664 6899999
Q ss_pred EEEEEEEeCCCCCceecc-----cceecc----cCCCCcccccceeccccc--cCCccCCeEEEEEEE
Q 001169 133 QFTIAVVNRDPKKSKYSD-----TLHRFW----KKEHDWGWKKFMELSKVS--DGFKDGDTLIIKAQV 189 (1133)
Q Consensus 133 qFtfsLLNQdGk~S~ske-----ssh~Fs----~ke~dWGwskFIkrsdLE--sGFLvDDsLTIeCdV 189 (1133)
+++|.|+||+...++... ....|. ..+..|||..||++++|+ .+||+||+|.|+|.|
T Consensus 96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence 999999999653332111 112342 234579999999999997 589999999999987
No 16
>smart00061 MATH meprin and TRAF homology.
Probab=99.59 E-value=5.4e-15 Score=132.68 Aligned_cols=93 Identities=26% Similarity=0.411 Sum_probs=79.3
Q ss_pred EEEEEcCccccC-CCeeeCCceeecCeEEEEEEEeCCCCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEEeCCCCCcee
Q 001169 70 YTWRIEKFSQIS-KRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKY 148 (1133)
Q Consensus 70 htWKIdNFS~LK-ge~I~Sp~FsVGGhkWRI~vYPnG~~~~dyLSLYLeL~s~esl~p~WsV~AqFtfsLLNQdGk~S~s 148 (1133)
++|+|.||+.+. ++.+.|+.|.+|||.|+|++||+ .+||||||+|.........|.|.|+|+|+|+|+++... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~----~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~-~ 76 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK----NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL-S 76 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc----CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE-e
Confidence 679999999984 67899999999999999999999 48999999997765444479999999999999987643 3
Q ss_pred cccceecccCCCCcccccce
Q 001169 149 SDTLHRFWKKEHDWGWKKFM 168 (1133)
Q Consensus 149 kessh~Fs~ke~dWGwskFI 168 (1133)
....+.|.. ..+|||.+||
T Consensus 77 ~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 77 KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred eeeeEEEcC-CCccceeeEC
Confidence 345788876 7889999986
No 17
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.36 E-value=2.5e-12 Score=132.25 Aligned_cols=121 Identities=29% Similarity=0.514 Sum_probs=93.8
Q ss_pred EEEEEEcCccccC-----CCeeeCCceeec-CeEEEEEEEeCCCC---CCCcEEEEEEEecCCCC-CCCceE-EEEEEEE
Q 001169 69 KYTWRIEKFSQIS-----KRELRSNAFEVG-GYKWYILIYPQGCD---VCNHLSLFLCVANHDKL-LPGWSH-FAQFTIA 137 (1133)
Q Consensus 69 shtWKIdNFS~LK-----ge~I~Sp~FsVG-GhkWRI~vYPnG~~---~~dyLSLYLeL~s~esl-~p~WsV-~AqFtfs 137 (1133)
.|+|+|.||+++. ...++|+.|+.. ||+.+|++||+|+. .+.|||||++++.++.+ ...|.+ .-+++|.
T Consensus 3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~ 82 (167)
T cd03783 3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIIT 82 (167)
T ss_pred ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEE
Confidence 5899999999865 257999999885 99999999999975 36799999999987654 247995 4589999
Q ss_pred EEeCCC---C-Cce----ecc---c------ceeccc--------------CCCCcccccceeccccc-cCCccCCeEEE
Q 001169 138 VVNRDP---K-KSK----YSD---T------LHRFWK--------------KEHDWGWKKFMELSKVS-DGFKDGDTLII 185 (1133)
Q Consensus 138 LLNQdG---k-~S~----ske---s------sh~Fs~--------------ke~dWGwskFIkrsdLE-sGFLvDDsLTI 185 (1133)
|+||++ + .++ ... . ...|.+ ...+|||..||+++.|+ .+||+||+|.|
T Consensus 83 llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlfI 162 (167)
T cd03783 83 VLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLII 162 (167)
T ss_pred EEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEEE
Confidence 999964 1 111 000 0 011332 24589999999999999 68999999999
Q ss_pred EEEE
Q 001169 186 KAQV 189 (1133)
Q Consensus 186 eCdV 189 (1133)
.+++
T Consensus 163 ~~~~ 166 (167)
T cd03783 163 FVDF 166 (167)
T ss_pred EEec
Confidence 9876
No 18
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.30 E-value=8.9e-12 Score=128.02 Aligned_cols=121 Identities=20% Similarity=0.401 Sum_probs=94.6
Q ss_pred EEEEEEcCccccC-----CCeeeCCceee-cCeEEEEEEEeCCCCC-CCcEEEEEEEecCCCC-CCCceEE-EEEEEEEE
Q 001169 69 KYTWRIEKFSQIS-----KRELRSNAFEV-GGYKWYILIYPQGCDV-CNHLSLFLCVANHDKL-LPGWSHF-AQFTIAVV 139 (1133)
Q Consensus 69 shtWKIdNFS~LK-----ge~I~Sp~FsV-GGhkWRI~vYPnG~~~-~dyLSLYLeL~s~esl-~p~WsV~-AqFtfsLL 139 (1133)
.|+|+|.||+++. ...++|++|+. .||+.+|.+||||.+. +.|||||++|+.++.+ ...|.+. -+++|.|+
T Consensus 3 ~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~Ll 82 (167)
T cd03782 3 EHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMMLL 82 (167)
T ss_pred cEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEEE
Confidence 5899999999875 25799999975 6999999999999753 5699999999987654 2479999 89999999
Q ss_pred eCCC---C-Cceec------c--cc--eec--ccC-----------------CCCcccccceeccccc-cCCccCCeEEE
Q 001169 140 NRDP---K-KSKYS------D--TL--HRF--WKK-----------------EHDWGWKKFMELSKVS-DGFKDGDTLII 185 (1133)
Q Consensus 140 NQdG---k-~S~sk------e--ss--h~F--s~k-----------------e~dWGwskFIkrsdLE-sGFLvDDsLTI 185 (1133)
||++ + .++.. . .. ..| ... +.+|||..||++++|+ ..||+||.|.|
T Consensus 83 DQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~ifi 162 (167)
T cd03782 83 DQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDDVIF 162 (167)
T ss_pred cCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCeEEE
Confidence 9964 1 12111 0 01 123 211 4689999999999999 68999999999
Q ss_pred EEEE
Q 001169 186 KAQV 189 (1133)
Q Consensus 186 eCdV 189 (1133)
-+++
T Consensus 163 ~~~~ 166 (167)
T cd03782 163 LLTM 166 (167)
T ss_pred EEec
Confidence 8775
No 19
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.6e-12 Score=163.00 Aligned_cols=235 Identities=22% Similarity=0.228 Sum_probs=170.7
Q ss_pred ccEEEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEEeC-CCCC
Q 001169 67 YGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNR-DPKK 145 (1133)
Q Consensus 67 tGshtWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~~~dyLSLYLeL~s~esl~p~WsV~AqFtfsLLNQ-dGk~ 145 (1133)
...++|.+.+...+.. ...++.|..|+..|+|.+.|+++ ....+++||.|...... ..|++++++.+.++|. +...
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~ 102 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVN-SLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLP 102 (1093)
T ss_pred cccccccCcCcchhhh-HhcCccccccccceeeeeccccC-cccceeEEeeeccCCCC-cceEecchhhhccccCCCCch
Confidence 3445576666655544 67899999999999999999987 45789999999876655 5699999999999993 2222
Q ss_pred ceecccceecccCCCCcccccceeccccc---cCCccCCeEEEEEEEEEeeecCCCCcccccccccceeee-ecCCchHH
Q 001169 146 SKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVR-VYLTNVEQ 221 (1133)
Q Consensus 146 S~skessh~Fs~ke~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd~~~~p~r~l~~ds~ketV~-VPpsNLga 221 (1133)
.......|+|.....+|||.+|+.+++|. .+|+++|++.+++.|.|...+... ..||.++.+++ |++.|+|+
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~----~~~d~k~~tg~~vGL~N~Ga 178 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLM----NPYDSKRLTGFPVGLKNLGA 178 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCccc----chhhhhhcCCCCccccCCCc
Confidence 23346789999889999999999999988 599999999999999998765321 36888899998 99999999
Q ss_pred HHhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhh-h-hhHHHHHHhhcccc
Q 001169 222 ICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEV-T-STLVMDSLYSGLKA 299 (1133)
Q Consensus 222 TC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ffa~keV-t-Splvmd~Lf~glk~ 299 (1133)
|| |+++|||+..-...||.-++.+.+. ..|..- + -++-|+.||.-|+.
T Consensus 179 TC---------Y~NsllQ~lf~~~~FR~~Vy~~~~~---------------------~~~~~~~~~v~~~lq~lF~~LQ~ 228 (1093)
T KOG1863|consen 179 TC---------YVNSLLQVLFLIPEFRRAVYSIPPF---------------------TGHEDPRRSIPLALQRLFYELQM 228 (1093)
T ss_pred ee---------eehHHHHHHHccHHHHHHHhcCCCC---------------------CCcccccchHHHHHHHHHHHHhh
Confidence 99 9999999988788888766666541 111111 1 26678888888876
Q ss_pred cccccccccccccccccCCCCCCceEeecceee------ehhhHHHHHHHhhcC
Q 001169 300 LEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFV------LVDDVLLLLERAALE 347 (1133)
Q Consensus 300 le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~------l~~Dll~~leR~al~ 347 (1133)
-.. +.++|.++.....+...+.|. |..-++..||+...+
T Consensus 229 s~~---------k~Vdt~~~~~~~~~~~~~~~~QqDvqEf~~~l~d~LE~~~~~ 273 (1093)
T KOG1863|consen 229 SKR---------KYVDTSELTKSLGWDSNDSFEQQDVQEFLTKLLDWLEDSMID 273 (1093)
T ss_pred cCC---------CCcCchhhhhhhhcccccHHhhhhHHHHHHHHHHHHHhhccc
Confidence 522 356666664333322212222 333444566666433
No 20
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.73 E-value=0.00015 Score=79.82 Aligned_cols=116 Identities=32% Similarity=0.653 Sum_probs=89.3
Q ss_pred EEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEEeCCCCCc-ee
Q 001169 70 YTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKS-KY 148 (1133)
Q Consensus 70 htWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~~~dyLSLYLeL~s~esl~p~WsV~AqFtfsLLNQdGk~S-~s 148 (1133)
+.|.|.+|+... ..++|..|..||..|++.+||.|+ |+++|+.+.... +|.+++.|.|.+.|+..... ..
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~ 76 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN----YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLST 76 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC----EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeee
Confidence 349999998875 668899999999999999999984 899999986542 79999999999999966532 22
Q ss_pred c-ccceecccC--CCCcccccceeccccc---cCCccCCeEEEEEEEEEeee
Q 001169 149 S-DTLHRFWKK--EHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIRE 194 (1133)
Q Consensus 149 k-essh~Fs~k--e~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd 194 (1133)
. .....|... ...||+..++....+. .||+.++.++|-+.+.|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~ 128 (297)
T KOG1987|consen 77 VEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEA 128 (297)
T ss_pred eeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceee
Confidence 2 233344332 5689998888877776 48999988888777776654
No 21
>PHA03098 kelch-like protein; Provisional
Probab=96.76 E-value=0.00025 Score=84.11 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=93.1
Q ss_pred cccchhhhhh--hhhhhcchhhh---hhhHHHHHHhhccc--cccc--ccccccccccccccCCCCCCceEeecceeeeh
Q 001169 264 REKTDAILKV--VVKHFFIEKEV---TSTLVMDSLYSGLK--ALEG--QSKSKKTKAKLLDAEDTPPPIVHVENDMFVLV 334 (1133)
Q Consensus 264 ~e~sDVilkV--~~k~Ffa~keV---tSplvmd~Lf~glk--~le~--~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~ 334 (1133)
++.+||+|.+ .+++|.+||.| +|++|..=+.++|+ .++- ....++.+++++|++++. +..+ -+
T Consensus 7 ~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~~~~~~~~~l~y~Ytg~~~-----i~~~---~~ 78 (534)
T PHA03098 7 QKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNIDYDSFNEVIKYIYTGKIN-----ITSN---NV 78 (534)
T ss_pred CCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecCCHHHHHHHHHHhcCCceE-----EcHH---HH
Confidence 4569999998 99999999987 66777653344553 1111 112377788999998863 2222 27
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Q 001169 335 DDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIEVAYQE 409 (1133)
Q Consensus 335 ~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E 409 (1133)
.|||.+++++.++.|.. .|.+.+.+. ++.++.. -+.++|.+|...|+++.. ++|. ++.-+|
T Consensus 79 ~~ll~~A~~l~~~~l~~---~C~~~l~~~------l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~---~v~~~~ 144 (534)
T PHA03098 79 KDILSIANYLIIDFLIN---LCINYIIKI------IDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIE---LIYNDP 144 (534)
T ss_pred HHHHHHHHHhCcHHHHH---HHHHHHHHh------CCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHH---HHhcCc
Confidence 89999999999999986 688888776 5555533 289999999999999976 5564 334445
Q ss_pred HHHHHHHHHH
Q 001169 410 AVALKRQEEL 419 (1133)
Q Consensus 410 ~~A~~rQ~~L 419 (1133)
.+..+-.+.|
T Consensus 145 ~f~~l~~~~l 154 (534)
T PHA03098 145 DFIYLSKNEL 154 (534)
T ss_pred hhhcCCHHHH
Confidence 5555444333
No 22
>PHA02713 hypothetical protein; Provisional
Probab=96.71 E-value=0.00054 Score=82.82 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=88.0
Q ss_pred ccchhhhhhh-hhhhcchhhh---hhhHHHHHHhh-ccccc--------cccc-ccccccccccccCCCCCCceEeecce
Q 001169 265 EKTDAILKVV-VKHFFIEKEV---TSTLVMDSLYS-GLKAL--------EGQS-KSKKTKAKLLDAEDTPPPIVHVENDM 330 (1133)
Q Consensus 265 e~sDVilkV~-~k~Ffa~keV---tSplvmd~Lf~-glk~l--------e~~t-~~~k~~~~~~~t~e~p~~~~~v~~d~ 330 (1133)
..+||+|.|. ++.|.+||.| .|++|. ++|. +|+.- ..-+ ..++.++.++||..+. .+
T Consensus 24 ~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~-amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i~-------~~- 94 (557)
T PHA02713 24 ILCDVIITIGDGEEIKAHKTILAAGSKYFR-TLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHIS-------SM- 94 (557)
T ss_pred CCCCEEEEeCCCCEEeehHHHHhhcCHHHH-HHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCCC-------HH-
Confidence 3599999998 8999999988 556654 4554 55421 1111 1256668899997642 11
Q ss_pred eeehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHHH
Q 001169 331 FVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIEV 405 (1133)
Q Consensus 331 ~~l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~ri~~ 405 (1133)
-+.|||.+++.+.++.|.. .|.+.+.+. ++.++.- -+.+.|.+|..++.+|. .++|. ++
T Consensus 95 --nv~~ll~aA~~lqi~~l~~---~C~~~l~~~------l~~~NCl~i~~~~~~~~~~~L~~~a~~~i--~~~f~---~v 158 (557)
T PHA02713 95 --NVIDVLKCADYLLIDDLVT---DCESYIKDY------TNHDTCIYMYHRLYEMSHIPIVKYIKRML--MSNIP---TL 158 (557)
T ss_pred --HHHHHHHHHHHHCHHHHHH---HHHHHHHhh------CCccchHHHHHHHHhccchHHHHHHHHHH--HHHHH---HH
Confidence 3799999999999999986 688888776 5544422 15566667776655554 47775 55
Q ss_pred HHHHHHHHHHHHHHHH
Q 001169 406 AYQEAVALKRQEELIR 421 (1133)
Q Consensus 406 Ay~E~~A~~rQ~~Ll~ 421 (1133)
+-+|.|..+-.++|++
T Consensus 159 ~~~~ef~~L~~~~l~~ 174 (557)
T PHA02713 159 ITTDAFKKTVFEILFD 174 (557)
T ss_pred hCChhhhhCCHHHHHH
Confidence 5567776666666653
No 23
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.32 E-value=0.012 Score=71.55 Aligned_cols=7 Identities=29% Similarity=-0.054 Sum_probs=3.6
Q ss_pred CCCCCcc
Q 001169 499 EKPDVLE 505 (1133)
Q Consensus 499 ~k~d~~e 505 (1133)
.|+++.-
T Consensus 380 qk~~~k~ 386 (811)
T KOG4364|consen 380 QKIDNKF 386 (811)
T ss_pred ccccccc
Confidence 5555543
No 24
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.012 Score=72.29 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 398 IFSNKIEVAYQEAVAL-KRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 398 ~F~~ri~~Ay~E~~A~-~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
-|+.+-+.-|.-+.|+ +|+.+.|+|.+..++++.|+|+|.
T Consensus 313 TFEDKrkeNy~kGqaELerRRq~leeqqqreree~eqkEre 353 (1118)
T KOG1029|consen 313 TFEDKRKENYEKGQAELERRRQALEEQQQREREEVEQKERE 353 (1118)
T ss_pred chhhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555543 344455555555444444444433
No 25
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.17 E-value=0.053 Score=65.08 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001169 416 QEELIREEEAAWLAESEQKAKRGA-AEKEKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 416 Q~~Ll~E~E~e~~~~~e~~~kk~~-k~keKk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
|.+-..|++++++.+.||++++.. .+++|+..++..+++|+.|+++||.+||+
T Consensus 211 qi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ 264 (591)
T KOG2412|consen 211 QIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEER 264 (591)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333344556666667777666654 55555666666777888888888744443
No 26
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=95.92 E-value=0.075 Score=64.92 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=7.3
Q ss_pred ccCCCCCCCCCccc
Q 001169 493 DAQPLPEKPDVLED 506 (1133)
Q Consensus 493 ~~~~~~~k~d~~e~ 506 (1133)
=.|.+-.|--+..+
T Consensus 378 ffqk~~~k~~~~~~ 391 (811)
T KOG4364|consen 378 FFQKIDNKFSTTCE 391 (811)
T ss_pred hhcccccccCCccc
Confidence 34566656534444
No 27
>PTZ00121 MAEBL; Provisional
Probab=95.86 E-value=0.048 Score=70.83 Aligned_cols=7 Identities=29% Similarity=1.042 Sum_probs=3.4
Q ss_pred hhhcccc
Q 001169 30 LAEWRSS 36 (1133)
Q Consensus 30 l~~~~~~ 36 (1133)
++.|.|.
T Consensus 575 ~~~~~~~ 581 (2084)
T PTZ00121 575 ISHWNSN 581 (2084)
T ss_pred ccccccc
Confidence 4455543
No 28
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.65 E-value=0.13 Score=66.78 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=3.3
Q ss_pred CCchhhh
Q 001169 976 FPHLDII 982 (1133)
Q Consensus 976 FPHLDII 982 (1133)
.||..-|
T Consensus 868 ~~~~~~~ 874 (1021)
T PTZ00266 868 LPHMNAI 874 (1021)
T ss_pred ccccchh
Confidence 4555444
No 29
>PTZ00121 MAEBL; Provisional
Probab=95.61 E-value=0.074 Score=69.27 Aligned_cols=8 Identities=0% Similarity=-0.106 Sum_probs=3.5
Q ss_pred hhhhhhhc
Q 001169 272 KVVVKHFF 279 (1133)
Q Consensus 272 kV~~k~Ff 279 (1133)
.+.|+.|+
T Consensus 986 ~~~GkCyi 993 (2084)
T PTZ00121 986 IANGECYH 993 (2084)
T ss_pred hhcCeeEE
Confidence 34444444
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.23 E-value=0.081 Score=65.26 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001169 418 ELIREEEAAWLAESEQKAKRGAAEKEKKAKKKL 450 (1133)
Q Consensus 418 ~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~~k~ 450 (1133)
+-|+|+.|.||+.+|-++|++.++.|||+.+.+
T Consensus 927 rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e 959 (1259)
T KOG0163|consen 927 RKIQELAEAERKRREAEEKRRREEEEKKRAKAE 959 (1259)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 335666667777777777777766666665544
No 31
>PHA02790 Kelch-like protein; Provisional
Probab=95.03 E-value=0.0069 Score=72.03 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=86.9
Q ss_pred hccccchhhhhhhhhhhcchhhh---hhhHHHHHHhhccccc---------ccccccccccccccccCCCCCCceEeecc
Q 001169 262 MSREKTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLKAL---------EGQSKSKKTKAKLLDAEDTPPPIVHVEND 329 (1133)
Q Consensus 262 m~~e~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk~l---------e~~t~~~k~~~~~~~t~e~p~~~~~v~~d 329 (1133)
|.++..||++ +.|+.|.+||.| -||+|..=+.++|+.= +......+.++.++||.++. +..+
T Consensus 18 ~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~-----it~~ 91 (480)
T PHA02790 18 MTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY-----IDSH 91 (480)
T ss_pred hhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEE-----Eecc
Confidence 3344466665 556699999988 4577765444567411 11111255567788987753 2222
Q ss_pred eeeehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHH
Q 001169 330 MFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIE 404 (1133)
Q Consensus 330 ~~~l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~ri~ 404 (1133)
=++|||.++....++.+.. .|.+.+.+. ++.++-- -+.|.|.+|.+++.+|.. ++|. +
T Consensus 92 ---nV~~ll~aA~~Lqi~~v~~---~C~~fL~~~------l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF~---~ 154 (480)
T PHA02790 92 ---NVVNLLRASILTSVEFIIY---TCINFILRD------FRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHFL---E 154 (480)
T ss_pred ---cHHHHHHHHHHhChHHHHH---HHHHHHHhh------CCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhHH---H
Confidence 2789999999999988765 588888887 6666622 289999999999887765 6664 2
Q ss_pred HHHH--HHHHHHHHHHHH
Q 001169 405 VAYQ--EAVALKRQEELI 420 (1133)
Q Consensus 405 ~Ay~--E~~A~~rQ~~Ll 420 (1133)
++-+ |.+..+-..+||
T Consensus 155 v~~~~~~ef~~L~~~~lL 172 (480)
T PHA02790 155 LEDDIIDNFDYLSMKLIL 172 (480)
T ss_pred HhcccchhhhhCCHHHhc
Confidence 3222 445444334555
No 32
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.97 E-value=0.21 Score=64.79 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=7.4
Q ss_pred ccCCcccccCCchh
Q 001169 967 QTQGVLVDEFPHLD 980 (1133)
Q Consensus 967 Q~qg~v~dEFPHLD 980 (1133)
|.-|-+.--|-||.
T Consensus 893 ~~~~~~~~~~~~~~ 906 (1021)
T PTZ00266 893 KKGGEVDRSYKHLE 906 (1021)
T ss_pred ccCcccchhhhhhh
Confidence 34445555566654
No 33
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.37 E-value=0.091 Score=61.36 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=67.1
Q ss_pred HhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhh---hhhhHHHHHHhhcccc-------c
Q 001169 231 RGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKE---VTSTLVMDSLYSGLKA-------L 300 (1133)
Q Consensus 231 ~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ffa~ke---VtSplvmd~Lf~glk~-------l 300 (1133)
.+||++|+-+.+ -+||.|.|..++|.+|+. +||.+|-+-||+||+. |
T Consensus 32 S~~~~~l~~~e~-----------------------y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL 88 (620)
T KOG4350|consen 32 SQSFDELFTSED-----------------------YSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL 88 (620)
T ss_pred hHHHHHHhhcCc-----------------------ccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc
Confidence 348888876655 399999999999999994 4999999999999974 2
Q ss_pred ccc-cccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCC
Q 001169 301 EGQ-SKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPL 349 (1133)
Q Consensus 301 e~~-t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~L 349 (1133)
+.. .-.|+++++.|||..+--.. ++-| ..=|+|.|+.||++.-|
T Consensus 89 q~t~~eAF~~lLrYiYtg~~~l~~--~~ed---~lld~LslAh~Ygf~~L 133 (620)
T KOG4350|consen 89 QETNSEAFRALLRYIYTGKIDLAG--VEED---ILLDYLSLAHRYGFIQL 133 (620)
T ss_pred ccccHHHHHHHHHHHhhcceeccc--chHH---HHHHHHHHHHhcCcHHH
Confidence 222 33589999999987653111 2222 23478889999987765
No 34
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.28 E-value=0.15 Score=60.78 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=14.1
Q ss_pred hHHHHHHHhhcCCCCC
Q 001169 336 DVLLLLERAALEPLPP 351 (1133)
Q Consensus 336 Dll~~leR~al~~Lp~ 351 (1133)
|+-.++.-|+|-+||-
T Consensus 436 d~~~lA~~YgLl~lP~ 451 (567)
T KOG0345|consen 436 DLGKLATLYGLLRLPK 451 (567)
T ss_pred cHHHHHHHHHHHhCCC
Confidence 7778999999999996
No 35
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=92.88 E-value=0.77 Score=55.67 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=7.7
Q ss_pred hhhHHHHHHhhcccc
Q 001169 285 TSTLVMDSLYSGLKA 299 (1133)
Q Consensus 285 tSplvmd~Lf~glk~ 299 (1133)
.++++|+.+-..++.
T Consensus 65 ~~~~~e~e~~~~~~~ 79 (591)
T KOG2412|consen 65 VMHVSEDEMESDEGE 79 (591)
T ss_pred cchhHHHHHHhcccc
Confidence 345666655444443
No 36
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=92.65 E-value=0.98 Score=54.00 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=9.2
Q ss_pred hhhHHHHHHhhccccc
Q 001169 285 TSTLVMDSLYSGLKAL 300 (1133)
Q Consensus 285 tSplvmd~Lf~glk~l 300 (1133)
..|+|+. ||..+..+
T Consensus 112 QiPIfig-Ly~vir~m 126 (429)
T PRK00247 112 QIPVFLG-LYQVLLRM 126 (429)
T ss_pred HHHHHHH-HHHHHHhc
Confidence 4676654 66666655
No 37
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=0.46 Score=59.21 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 001169 834 GYIPQSYRN 842 (1133)
Q Consensus 834 sy~pqsYrN 842 (1133)
.+.|-||=.
T Consensus 857 GwFPksYVk 865 (1118)
T KOG1029|consen 857 GWFPKSYVK 865 (1118)
T ss_pred CcCcHHhhh
Confidence 477888865
No 38
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=92.45 E-value=0.67 Score=55.32 Aligned_cols=20 Identities=25% Similarity=0.684 Sum_probs=11.7
Q ss_pred CCCCce--EeecceeeehhhHH
Q 001169 319 TPPPIV--HVENDMFVLVDDVL 338 (1133)
Q Consensus 319 ~p~~~~--~v~~d~~~l~~Dll 338 (1133)
+|+.++ ++.++.|++.+-++
T Consensus 247 ~PaallLYWv~snlwtl~Qq~i 268 (429)
T PRK00247 247 FPTAIALYWVANNLWTLIQNII 268 (429)
T ss_pred chHHHHHHHHHhhHHHHHHHHH
Confidence 454432 36777777766554
No 39
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.33 E-value=0.039 Score=67.48 Aligned_cols=137 Identities=17% Similarity=0.129 Sum_probs=84.6
Q ss_pred cccchhhhhhhhhhhcchhhh---hhhHHHHHHhhc-cccccccccc--------ccccccccccCCCCCCceEeeccee
Q 001169 264 REKTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG-LKALEGQSKS--------KKTKAKLLDAEDTPPPIVHVENDMF 331 (1133)
Q Consensus 264 ~e~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~g-lk~le~~t~~--------~k~~~~~~~t~e~p~~~~~v~~d~~ 331 (1133)
++..||+|.|.++.|.+||.| .||+|. ++|.+ |+.-....-. ...++.++||..+. +..+
T Consensus 34 ~~lcDv~L~v~~~~~~aHR~VLAa~S~YFr-aMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~-----i~~~-- 105 (571)
T KOG4441|consen 34 GLLCDVTLLVGDREFPAHRVVLAACSPYFR-AMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLE-----ISED-- 105 (571)
T ss_pred CCCceEEEEECCeeechHHHHHHhccHHHH-HHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEE-----echH--
Confidence 446999999999999999977 557654 46663 3222111001 22234566665532 1111
Q ss_pred eehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHHHH
Q 001169 332 VLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIEVA 406 (1133)
Q Consensus 332 ~l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~ri~~A 406 (1133)
=+++||.++..+.+..+-. .|..-+.+. +..++.. .|.+.|.||... .+.|+ -++|. ++.
T Consensus 106 -nVq~ll~aA~~lQi~~v~~---~C~~fL~~~------l~~~Nclgi~~~a~~~~~~~L~~~-a~~~i-~~~F~---~v~ 170 (571)
T KOG4441|consen 106 -NVQELLEAASLLQIPEVVD---ACCEFLESQ------LDPSNCLGIRRFAELHSCTELLEV-ADEYI-LQHFA---EVS 170 (571)
T ss_pred -hHHHHHHHHHHhhhHHHHH---HHHHHHHhc------CCHHHHHHHHHHHHhcCcHHHHHH-HHHHH-HHHHH---HHh
Confidence 2578888888877766543 576666665 4444432 277888877644 44455 46675 777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001169 407 YQEAVALKRQEELIREE 423 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~ 423 (1133)
-+|.+-++-+++|+.=+
T Consensus 171 ~~eefl~L~~~~l~~ll 187 (571)
T KOG4441|consen 171 KTEEFLLLSLEELIGLL 187 (571)
T ss_pred ccHHhhCCCHHHHHhhc
Confidence 88888888888887644
No 40
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=92.32 E-value=0.57 Score=56.73 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=10.2
Q ss_pred hhHHHhhHHHHHhhhcc
Q 001169 227 VEERRGKLGRLIEDKAR 243 (1133)
Q Consensus 227 ved~~~hLG~LLqS~~~ 243 (1133)
|..+++=|..-|...++
T Consensus 81 I~nlrrIiagyl~~ayg 97 (489)
T PF05262_consen 81 INNLRRIIAGYLEAAYG 97 (489)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34455566666766664
No 41
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=92.24 E-value=0.91 Score=55.02 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=6.4
Q ss_pred EEEEEEeCCCC
Q 001169 134 FTIAVVNRDPK 144 (1133)
Q Consensus 134 FtfsLLNQdGk 144 (1133)
-++.++|-.|.
T Consensus 9 ~~i~F~Ny~gp 19 (489)
T PF05262_consen 9 MTIEFINYSGP 19 (489)
T ss_pred CceEEEecCCC
Confidence 45666776553
No 42
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.89 E-value=1.9 Score=54.06 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.9
Q ss_pred hhHHHHHhhhcc
Q 001169 232 GKLGRLIEDKAR 243 (1133)
Q Consensus 232 ~hLG~LLqS~~~ 243 (1133)
.+|+.||+....
T Consensus 648 tQL~~LldKL~s 659 (1259)
T KOG0163|consen 648 TQLSELLDKLES 659 (1259)
T ss_pred HHHHHHHHHHHh
Confidence 357777665543
No 43
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=91.33 E-value=1.8 Score=54.80 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=11.3
Q ss_pred HHhhhHHHHHHHhhhhhHHHHHH
Q 001169 384 ELGRRTVEIFVLAHIFSNKIEVA 406 (1133)
Q Consensus 384 Elgrr~~~ifa~~k~F~~ri~~A 406 (1133)
..+.++-+|.--...|+++|+..
T Consensus 743 k~k~~l~rm~~d~~~f~e~vk~~ 765 (988)
T KOG2072|consen 743 KDKKRLSRMYDDRDKFKEHVKGE 765 (988)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhh
Confidence 34455555555455555544443
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=90.75 E-value=0.16 Score=59.77 Aligned_cols=77 Identities=27% Similarity=0.444 Sum_probs=63.2
Q ss_pred ccccEEEEEEcCccccC-------CCeeeCCceee--cCeEEEEEEEeCCCC--CCCcEEEEEEEecCCCC-CCCceEEE
Q 001169 65 ELYGKYTWRIEKFSQIS-------KRELRSNAFEV--GGYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LK-------ge~I~Sp~FsV--GGhkWRI~vYPnG~~--~~dyLSLYLeL~s~esl-~p~WsV~A 132 (1133)
...|+..|+|.+|...+ ...+.|+.|+. .||+-+.++|-+|+. .+-++|+|+.+..++.+ ...|.++-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 46799999999996544 24688999986 699999999988764 36799999999987654 24799999
Q ss_pred EEEEEEEeC
Q 001169 133 QFTIAVVNR 141 (1133)
Q Consensus 133 qFtfsLLNQ 141 (1133)
..+|.|+++
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999998
No 45
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.60 E-value=2.7 Score=47.61 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhhhhHHHHH-Hhhhhhhh
Q 001169 449 KLAKQKRNNRKGKEKKREE-RSSMALSD 475 (1133)
Q Consensus 449 k~ak~~e~~rk~~e~~~ee-~~~~~~~~ 475 (1133)
.+|.|+++++|++||...| ...+..+|
T Consensus 387 ieareerrkqkeeeklk~e~qkikelee 414 (445)
T KOG2891|consen 387 IEAREERRKQKEEEKLKAEEQKIKELEE 414 (445)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3467777777777776544 34444444
No 46
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=89.92 E-value=3.1 Score=52.72 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001169 406 AYQEAVALKRQEELIREEEA-AWLAESEQ 433 (1133)
Q Consensus 406 Ay~E~~A~~rQ~~Ll~E~E~-e~~~~~e~ 433 (1133)
.|.|.+--.||..+-+-+-. +++++.||
T Consensus 757 ~f~e~vk~~rqs~~~e~~~~~ea~leaer 785 (988)
T KOG2072|consen 757 KFKEHVKGERQSEYEEKLKQFEARLEAER 785 (988)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 36777777777776655533 44555555
No 47
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=1.2 Score=49.59 Aligned_cols=38 Identities=29% Similarity=0.191 Sum_probs=19.9
Q ss_pred CCCCcCCCCcccCCCCccCCCCcCCCCccCCCcccccccccccC
Q 001169 531 SPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDD 574 (1133)
Q Consensus 531 s~v~w~~d~~e~~~~~~~~~~~~~~~~~~~n~~~~k~~~s~~~~ 574 (1133)
--|+-+.=||+++=-|..+.| -+||=+++.--+.+|||
T Consensus 213 KvV~ledLas~f~Lrtqd~in------riq~~l~eg~ltGVmDD 250 (299)
T KOG3054|consen 213 KVVPLEDLASEFGLRTQDSIN------RIQELLAEGLLTGVMDD 250 (299)
T ss_pred CeeeHHHHHHHhCccHHHHHH------HHHHHHHhhhheeeecC
Confidence 345555556666665554443 23444444444566666
No 48
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=89.70 E-value=0.037 Score=51.59 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=22.9
Q ss_pred ccchhhhhhh-hhhhcchhhh---hhhHHHHHHhhc
Q 001169 265 EKTDAILKVV-VKHFFIEKEV---TSTLVMDSLYSG 296 (1133)
Q Consensus 265 e~sDVilkV~-~k~Ffa~keV---tSplvmd~Lf~g 296 (1133)
+.+|++|++. +++|++||.+ +||+|.+-+...
T Consensus 9 ~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~ 44 (111)
T PF00651_consen 9 EFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGS 44 (111)
T ss_dssp TS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT
T ss_pred CCCCEEEEECCCEEEeechhhhhccchhhhhccccc
Confidence 4699999999 8999999977 778776655444
No 49
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.21 E-value=3.7 Score=42.42 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001169 410 AVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
++...|++++...+++.++.++|-++.+.+
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e 78 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQ 78 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888877777666555554
No 50
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=89.20 E-value=0.98 Score=51.83 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=5.9
Q ss_pred CCeEEEEE
Q 001169 180 GDTLIIKA 187 (1133)
Q Consensus 180 DDsLTIeC 187 (1133)
.|.++|.+
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 67777776
No 51
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=88.87 E-value=0.92 Score=52.07 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=6.8
Q ss_pred HHhhHHhhhHHHHHH
Q 001169 380 RRLTELGRRTVEIFV 394 (1133)
Q Consensus 380 ~~~~Elgrr~~~ifa 394 (1133)
..+..+.-.+++.++
T Consensus 234 ~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 234 EPLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344444444444444
No 52
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=88.77 E-value=3.5 Score=45.60 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=26.6
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 387 RRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 387 rr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
-.+|.|+++--++. ++.---=-++...|++++...+++.++.++|-++.+
T Consensus 10 ~qiInFlil~~lL~-kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 59 (246)
T TIGR03321 10 AQLINFLILVWLLK-RFLYRPILDAMDAREKKIAGELADADTKKREAEQER 59 (246)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556655544443 222111234456777888777777666655444333
No 53
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=88.68 E-value=2.8 Score=50.37 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 389 TVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
+|.|+++--++. ++..----++..+||+++..++++.+..+++-++.+
T Consensus 8 lInFlIl~~lL~-kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~ 55 (445)
T PRK13428 8 LIGFAVIVFLVW-RFVVPPVRRLMAARQDTVRQQLAESATAADRLAEAD 55 (445)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444443 222222345567888999888888776655444433
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.31 E-value=3.3 Score=53.35 Aligned_cols=14 Identities=21% Similarity=0.038 Sum_probs=9.7
Q ss_pred hhHHhhhHHHHHHH
Q 001169 382 LTELGRRTVEIFVL 395 (1133)
Q Consensus 382 ~~Elgrr~~~ifa~ 395 (1133)
..|+++|.|+-+..
T Consensus 784 ~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 784 ELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 35778888886654
No 55
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.27 E-value=1.9 Score=48.71 Aligned_cols=15 Identities=33% Similarity=0.846 Sum_probs=7.6
Q ss_pred CCCcccccceeccccc
Q 001169 159 EHDWGWKKFMELSKVS 174 (1133)
Q Consensus 159 e~dWGwskFIkrsdLE 174 (1133)
.++|- .-||...++.
T Consensus 127 rhdwd-d~fm~~kdmd 141 (445)
T KOG2891|consen 127 RHDWD-DFFMDAKDMD 141 (445)
T ss_pred ccchH-HHHhhhhhhh
Confidence 45663 2356655543
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=87.92 E-value=7.9 Score=50.20 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=4.6
Q ss_pred eeecCCchH
Q 001169 212 VRVYLTNVE 220 (1133)
Q Consensus 212 V~VPpsNLg 220 (1133)
+.+-|+|+.
T Consensus 639 L~~dpkN~y 647 (1018)
T KOG2002|consen 639 LRNDPKNMY 647 (1018)
T ss_pred HhcCcchhh
Confidence 445555653
No 57
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=87.03 E-value=4.6 Score=45.12 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 388 RTVEIFVLAHIFSNKIEVAYQ--EAVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 388 r~~~ifa~~k~F~~ri~~Ay~--E~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
.+|.|++|--+++ +..|+ =++-.+|++++..++++.+..++|-
T Consensus 11 qiInFlILv~lL~---~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA 55 (250)
T PRK14474 11 QIINFLILVYLLR---RFLYKPIIQVMKKRQQRIANRWQDAEQRQQEA 55 (250)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544443 22222 2344667777777777766554443
No 58
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=86.92 E-value=6.1 Score=40.92 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 410 AVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
++-.+|+..+-.++++.+..+++-++.+.
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 63 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQA 63 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888777766555544443
No 59
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=86.88 E-value=6.1 Score=41.50 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=30.2
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
.-..+|.|+++--++. ++.---=-++-..|+.++...+++.+...++-++.+.
T Consensus 21 ~~~~~i~Flil~~lL~-~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 73 (175)
T PRK14472 21 IFWTAVTFVIVLLILK-KIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILR 73 (175)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666544443 2222223345577888888888887766555444443
No 60
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=86.86 E-value=5.1 Score=43.56 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001169 384 ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 384 Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
.+-.-+|.|++|--++. |+..=-=-++..+||.++...+++.++.+.|-++.+.+
T Consensus 55 ~l~w~~I~FliL~~lL~-k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ 109 (204)
T PRK09174 55 QLLWLAITFGLFYLFMS-RVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAA 109 (204)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666544443 22222234566788999999998888777665555544
No 61
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=86.71 E-value=5.3 Score=42.42 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 384 ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 384 Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
.+-.-+|-||+|--+|. |+..-==-++..+|+.++-..+++.+..+.+-+..+
T Consensus 33 q~~~~lI~F~iL~~ll~-k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 85 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLT-RVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAE 85 (181)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455666666444442 222222245556777777777766665554443333
No 62
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=86.63 E-value=6.4 Score=41.41 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=27.5
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 386 GRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
...+|.|++|--++. ++.---=-++-..|++.+..++++.+....+-++.+.
T Consensus 22 ~~~iInFliL~~lL~-~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 73 (173)
T PRK13453 22 IVTVLTFIVLLALLK-KFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEE 73 (173)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444442 2222222344567788888888777766555444443
No 63
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=86.19 E-value=6.7 Score=42.60 Aligned_cols=51 Identities=12% Similarity=-0.050 Sum_probs=28.9
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAK 436 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~k 436 (1133)
+--.+|.|+++--+|. ++.-----++...|+..+..++++.+...+|-++.
T Consensus 51 ~i~qlInFlIlv~lL~-k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~ 101 (205)
T PRK06231 51 FIAHLIAFSILLLLGI-FLFWKPTQRFLNKRKELIEAEINQANELKQQAQQL 101 (205)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666555553 22222234556778888888887766655544333
No 64
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=86.14 E-value=6.5 Score=41.30 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=30.2
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 385 LGRRTVEIFVLAHIFSNKIEVAYQ--EAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~ri~~Ay~--E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
+-..+|.|+++--++. +.+|+ -++-.+|++++..++++.+....+-+..+.
T Consensus 25 ~~~~~inflil~~lL~---~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~ 77 (167)
T PRK08475 25 IIERTINFLIFVGILW---YFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKE 77 (167)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677776555554 23332 345577888888888776666554444443
No 65
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=85.52 E-value=8.2 Score=40.51 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=28.6
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 388 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 388 r~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
.+|.|+++--+|. ++.--.=-++...||.++...+++.+..+++-++..
T Consensus 25 ~iinflIl~~lL~-~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~ 73 (174)
T PRK07352 25 NLINLAIVIGLLY-YFGRGFLGKILEERREAILQALKEAEERLRQAAQAL 73 (174)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555444443 222222356677888888888888776655444333
No 66
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=84.93 E-value=6.2 Score=41.73 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001169 389 TVEIFVLAHIFSNKIEVAYQ---EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~Ay~---E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
+|.|+++.-++. ..+|. -++-..||+++..++++.++.++|-++...+
T Consensus 33 ~inflil~~iL~---~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e 83 (184)
T PRK13455 33 TLAFLLFIGILV---YFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLAS 83 (184)
T ss_pred HHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666555542 22321 4567889999999998887776655544443
No 67
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=84.85 E-value=9.9 Score=43.69 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=37.0
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHH
Q 001169 386 GRRTVEIFVLAHIFSNKIEVAYQEA--VALKRQEELIREEEAAWLAESEQ---KAKRGAAEKEKKAK 447 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~ri~~Ay~E~--~A~~rQ~~Ll~E~E~e~~~~~e~---~~kk~~k~keKk~~ 447 (1133)
=.=+|++.| .|.++|-++..+.|- -++.+|.+..+++..+++.+-+| .++|..+|||++.+
T Consensus 130 V~PiLeVLV-gKtlEQAl~EV~EEeEL~~lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~ 195 (291)
T PF06098_consen 130 VKPILEVLV-GKTLEQALMEVMEEEELAALRRQQRAFEELRNAELAEVQRLEEAEKRRREEKERRIK 195 (291)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336778888 888887777776654 34555666777776666665544 33333344444333
No 68
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=84.82 E-value=10 Score=38.12 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001169 409 EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-++-..|+.++...+++.+....+-++...+
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~ 61 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQ 61 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888887777666555444443
No 69
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=84.80 E-value=3.3 Score=49.30 Aligned_cols=12 Identities=8% Similarity=0.111 Sum_probs=8.6
Q ss_pred hHHhhhHHHHHH
Q 001169 383 TELGRRTVEIFV 394 (1133)
Q Consensus 383 ~Elgrr~~~ifa 394 (1133)
+|+-..+||+++
T Consensus 101 pE~TNelLQ~~g 112 (583)
T KOG3809|consen 101 PEETNELLQMLG 112 (583)
T ss_pred HHHHHHHHHHHH
Confidence 566777777776
No 70
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=84.25 E-value=11 Score=39.54 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=27.6
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
....+|.|+++--++. ++..--=-++-..|+.+...++++.+....|-++.+
T Consensus 19 ~~~~~i~Flil~~iL~-~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 70 (173)
T PRK13460 19 VVWTLVTFLVVVLVLK-KFAWDVILKALDERASGVQNDINKASELRLEAEALL 70 (173)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566555444432 222222234556778888888777666655444333
No 71
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=84.03 E-value=16 Score=38.64 Aligned_cols=58 Identities=16% Similarity=-0.024 Sum_probs=37.8
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001169 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKE 443 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~ke 443 (1133)
+=.-+|.|+++--+|+ |+..=-=.++...||.++-..++++++.+.|-++.+++-+++
T Consensus 13 ifw~iI~FlILy~ll~-kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~ 70 (155)
T PRK06569 13 IFWLIVTFGLLYIFVY-KFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEE 70 (155)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566665444443 333333466778899999999999888888776666653333
No 72
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=83.96 E-value=9.6 Score=39.85 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001169 409 EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-++-..|+.++..+++++++.++|-++.+.+
T Consensus 36 ~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~ 66 (167)
T PRK14475 36 AGALDAYAAKIQAELDEAQRLREEAQALLAD 66 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999998888877766555554
No 73
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=83.89 E-value=10 Score=40.26 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=27.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 388 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 388 r~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
.+|.|+++--++. ++.--.=-++-.+||..+...+++.++.+.+-+.+..
T Consensus 30 ~~Inflill~lL~-~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 79 (184)
T CHL00019 30 NLINLSVVLGVLI-YFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLE 79 (184)
T ss_pred HHHHHHHHHHHHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555444443 2222223345567888888888777666554444333
No 74
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=4.4 Score=45.35 Aligned_cols=14 Identities=29% Similarity=0.174 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 001169 416 QEELIREEEAAWLA 429 (1133)
Q Consensus 416 Q~~Ll~E~E~e~~~ 429 (1133)
+.++.+|-|+.+|.
T Consensus 116 err~qRe~E~~eRE 129 (299)
T KOG3054|consen 116 ERRAQREAEEAERE 129 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555544443
No 75
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=83.31 E-value=11 Score=39.21 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 410 AVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
++-..|+.++...+++.+....+-++.+.
T Consensus 35 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~ 63 (164)
T PRK14473 35 NLLNERTRRIEESLRDAEKVREQLANAKR 63 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888777666554444433
No 76
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=82.85 E-value=7.1 Score=46.43 Aligned_cols=9 Identities=33% Similarity=0.542 Sum_probs=4.1
Q ss_pred cccCCCCCC
Q 001169 507 VSDVSDSVD 515 (1133)
Q Consensus 507 ~sd~sd~~d 515 (1133)
+.|+-..++
T Consensus 259 ~dd~~~gl~ 267 (387)
T PRK09510 259 VDDLFGGLD 267 (387)
T ss_pred HHHHhhccc
Confidence 444444444
No 77
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.66 E-value=10 Score=45.32 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=15.9
Q ss_pred ccceecccccc----CCc-cCCeEEEEEEEE
Q 001169 165 KKFMELSKVSD----GFK-DGDTLIIKAQVQ 190 (1133)
Q Consensus 165 skFIkrsdLEs----GFL-vDDsLTIeCdVt 190 (1133)
.++++|.+|.+ -++ +.|.++|++.+.
T Consensus 189 L~l~~RqDl~S~v~~~v~P~~D~vt~ev~l~ 219 (440)
T KOG2357|consen 189 LKLVKRQDLLSRVMNSVRPVGDQVTFEVTLN 219 (440)
T ss_pred hhhhhhccHHHHHHHhcccccceEEEEEecC
Confidence 45677777763 223 357888777664
No 78
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=82.45 E-value=4.5 Score=46.64 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 001169 417 EELIREEEAA 426 (1133)
Q Consensus 417 ~~Ll~E~E~e 426 (1133)
++.|++||.+
T Consensus 100 qErlkQle~e 109 (387)
T COG3064 100 QERLKQLEKE 109 (387)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 79
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=82.35 E-value=11 Score=40.92 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=26.6
Q ss_pred HHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 379 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESE 432 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e 432 (1133)
...|-+--+||++..+ -|..++.+.|.|||+|+++-.+
T Consensus 90 ~~~qk~~q~Rm~~qL~----------------~aE~rhrr~i~eLe~EKrkh~~ 127 (192)
T PF09727_consen 90 MEHQKKMQRRMLEQLA----------------AAEKRHRRTIQELEEEKRKHAE 127 (192)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666655 2678899999999999887543
No 80
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=81.47 E-value=16 Score=37.47 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 409 EAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
-++...|+++.-..+++.++.+.+-++.+.
T Consensus 33 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 62 (141)
T PRK08476 33 LKFMDNRNASIKNDLEKVKTNSSDVSEIEH 62 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777766666554444333
No 81
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=80.91 E-value=14 Score=38.83 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=28.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001169 388 RTVEIFVLAHIFSNKIEVAYQE--AVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 388 r~~~ifa~~k~F~~ri~~Ay~E--~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-+|.|++|--+|. +.+|+= ++-..|+.+.-.+++++++.++|-+.-+..
T Consensus 10 q~I~FlIll~ll~---kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e 60 (154)
T PRK06568 10 LAVSFVIFVYLIY---RPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQ 60 (154)
T ss_pred HHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444454 333332 344667778888888877776665554443
No 82
>COG4499 Predicted membrane protein [Function unknown]
Probab=80.86 E-value=3 Score=49.21 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=12.5
Q ss_pred CCceeecC-----eEEEEEEEeCC
Q 001169 87 SNAFEVGG-----YKWYILIYPQG 105 (1133)
Q Consensus 87 Sp~FsVGG-----hkWRI~vYPnG 105 (1133)
+++|.+.. -.|.|.|-|.-
T Consensus 48 ~~~f~~~eit~~~Ds~vIsy~i~~ 71 (434)
T COG4499 48 SPPFIVAEITEDNDSFVISYPIPE 71 (434)
T ss_pred CCCccceeecccCceeEEEecCcc
Confidence 67776543 46888877664
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.48 E-value=71 Score=39.89 Aligned_cols=62 Identities=23% Similarity=0.203 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHhhhhhhhhhcccCCchhhhhhhhcccCCCCCCCCCccc---cccCCCCCCCCccc
Q 001169 458 RKGKEKKREERSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLED---VSDVSDSVDGGAEV 520 (1133)
Q Consensus 458 rk~~e~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~d~~e~---~sd~sd~~d~~~e~ 520 (1133)
.||||+..+|+......-+++|..-.+ --+.+-++|--+.+-...... .+|+|||-|.+-|.
T Consensus 430 qkEKEql~~EkQeL~~yi~~Le~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~de~p~~ 494 (546)
T PF07888_consen 430 QKEKEQLQEEKQELLEYIERLEQRLDK-VADEKWKEAAALTEDATAASPPSCPADLSDSEDESPED 494 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhccccccCccccccCCCCCcCCCCcccCCccc
Confidence 366666667766666666666533222 223333344444433333322 27788888887774
No 84
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=80.39 E-value=20 Score=37.01 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=24.0
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 386 GRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
...+|.|++|--++. ++.---=-++-..|+.++...+++.+....+-
T Consensus 9 ~~~~inF~il~~iL~-~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA 55 (159)
T PRK13461 9 IATIINFIILLLILK-HFFFDKIKAVIDSRQSEIDNKIEKADEDQKKA 55 (159)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556555444443 22111123445667777777777765554433
No 85
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=79.79 E-value=0.37 Score=41.92 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=46.7
Q ss_pred hhhhhhhhhhhcchhhh---hhhHHHHHHhhccc-----c--ccc-ccccccccccccccCCCCCCceEeecceeeehhh
Q 001169 268 DAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK-----A--LEG-QSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDD 336 (1133)
Q Consensus 268 DVilkV~~k~Ffa~keV---tSplvmd~Lf~glk-----~--le~-~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~D 336 (1133)
||++.+.+++|.+||.+ .|+.|..-+..+.. . +.. ....++..++++|++....+.. .+.+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~--------~~~~ 72 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE--------NVEE 72 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH--------HHHH
Confidence 67889999999999987 44555443333221 1 111 1123666778888876432221 4568
Q ss_pred HHHHHHHhhcCCCC
Q 001169 337 VLLLLERAALEPLP 350 (1133)
Q Consensus 337 ll~~leR~al~~Lp 350 (1133)
|+.+++.+.++.|-
T Consensus 73 l~~~a~~~~~~~l~ 86 (90)
T smart00225 73 LLELADYLQIPGLV 86 (90)
T ss_pred HHHHHHHHCcHHHH
Confidence 88888888877663
No 86
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=79.34 E-value=7 Score=45.13 Aligned_cols=12 Identities=33% Similarity=0.260 Sum_probs=5.0
Q ss_pred HHHHHHhhhhhh
Q 001169 463 KKREERSSMALS 474 (1133)
Q Consensus 463 ~~~ee~~~~~~~ 474 (1133)
++++|+..++++
T Consensus 178 kA~eeAkaKAe~ 189 (387)
T COG3064 178 KAAEEAKAKAEA 189 (387)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 87
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=78.71 E-value=21 Score=36.11 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=19.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 393 FVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 393 fa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
|+|-+.|...|.. +-..|+.....++++.+....+-
T Consensus 10 ~il~~~~~~pi~~-----~l~~R~~~I~~~l~~A~~~~~ea 45 (147)
T TIGR01144 10 WFCMKYVWPPLAK-----AIETRQKKIADGLASAERAKKEA 45 (147)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 34566777777776665554433
No 88
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.28 E-value=22 Score=42.91 Aligned_cols=18 Identities=33% Similarity=0.288 Sum_probs=10.9
Q ss_pred hhhHHHHHHhhccccccc
Q 001169 285 TSTLVMDSLYSGLKALEG 302 (1133)
Q Consensus 285 tSplvmd~Lf~glk~le~ 302 (1133)
-+.++|..||+--|+...
T Consensus 10 i~a~~~S~~~~~nka~ad 27 (630)
T KOG0742|consen 10 ISALAMSWLFGINKAYAD 27 (630)
T ss_pred HHHHHHHHHhccchhhcc
Confidence 456667777776664433
No 89
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.22 E-value=9.5 Score=44.51 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=11.7
Q ss_pred CCCcccCCCccceeeec
Q 001169 575 SSSTCSTDSVPSVVMYG 591 (1133)
Q Consensus 575 ~sstcs~ds~~~~~~~g 591 (1133)
-|--|-++|.|---..|
T Consensus 316 msvfcqtesfpaerthg 332 (561)
T KOG1103|consen 316 MSVFCQTESFPAERTHG 332 (561)
T ss_pred hhhhhhcccCchhhccc
Confidence 36679999988554444
No 90
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=76.82 E-value=26 Score=35.76 Aligned_cols=23 Identities=26% Similarity=0.136 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001169 411 VALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 411 ~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
+-..|+..+...+++.+....+-
T Consensus 32 ~l~~R~~~I~~~l~~a~~~~~~a 54 (156)
T PRK05759 32 ALEERQKKIADGLAAAERAKKEL 54 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667776666655554433
No 91
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=76.63 E-value=22 Score=38.76 Aligned_cols=17 Identities=47% Similarity=0.468 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001169 440 AEKEKKAKKKLAKQKRN 456 (1133)
Q Consensus 440 k~keKk~~~k~ak~~e~ 456 (1133)
||||.|+++|+||++++
T Consensus 198 kEkeekK~~KeaKrk~k 214 (225)
T KOG4848|consen 198 KEKEEKKAVKEAKRKEK 214 (225)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444455544443
No 92
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=76.45 E-value=3.9 Score=47.64 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=5.2
Q ss_pred hHHHHHhhhc
Q 001169 233 KLGRLIEDKA 242 (1133)
Q Consensus 233 hLG~LLqS~~ 242 (1133)
-+-.|++.+.
T Consensus 207 ~vkkl~k~~~ 216 (405)
T KOG2963|consen 207 NVKKLVKAKK 216 (405)
T ss_pred HHHHHHhhhc
Confidence 4555555443
No 93
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.00 E-value=45 Score=36.03 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 379 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEE 424 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E 424 (1133)
.-.|+|-|.=++.|+=--.+.-.++..-|...++.-.+..|..|..
T Consensus 76 Ti~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~ 121 (189)
T PF10211_consen 76 TIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQG 121 (189)
T ss_pred HhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457887866666655433333456666777777766666666543
No 94
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=75.81 E-value=0.92 Score=52.59 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=30.8
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001169 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 213 ~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
+||+.|+|.|| ||++|||.......||.+++...
T Consensus 1 PvGL~NlGNTC---------YmNSlLQ~L~~i~~lR~~i~~~~ 34 (343)
T cd02666 1 PAGLDNIGNTC---------YLNSLLQYFFTIKPLRDLVLNFD 34 (343)
T ss_pred CCCcccCCcee---------HHHHHHHHHHccHHHHHHHHcCC
Confidence 47999999999 99999999999999999887765
No 95
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=75.38 E-value=22 Score=43.04 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001169 404 EVAYQEAVALKRQEEL 419 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~L 419 (1133)
++|..-+-++++|-++
T Consensus 513 kva~dnar~qekQiq~ 528 (641)
T KOG3915|consen 513 KVAIDNARAQEKQIQL 528 (641)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 96
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.21 E-value=3.5 Score=49.01 Aligned_cols=20 Identities=55% Similarity=0.727 Sum_probs=15.4
Q ss_pred CCccccccCCCCCCCCccccC
Q 001169 502 DVLEDVSDVSDSVDGGAEVLQ 522 (1133)
Q Consensus 502 d~~e~~sd~sd~~d~~~e~~~ 522 (1133)
-++-+|||++.+.|+ .|||-
T Consensus 68 ~~~~~v~dl~~~~~~-~~V~v 87 (533)
T KOG0556|consen 68 RELTDVSDLDESNDG-SEVLV 87 (533)
T ss_pred cceeehhhhhhhcCC-ceEEE
Confidence 455579999999999 66654
No 97
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=73.82 E-value=9.3 Score=48.57 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 001169 389 TVEIFVLAHIFSNKIEVAYQEAV 411 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~Ay~E~~ 411 (1133)
|=+||+-.++|+ .||.|++
T Consensus 975 mEEFFaDi~tFr----naf~ea~ 993 (1102)
T KOG1924|consen 975 MEEFFADIRTFR----NAFLEAV 993 (1102)
T ss_pred HHHHHHHHHHHH----HHHHHHH
Confidence 345888788884 5566655
No 98
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=73.78 E-value=2.6 Score=52.52 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhc
Q 001169 402 KIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA---AEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLE 478 (1133)
Q Consensus 402 ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~---k~keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~~ 478 (1133)
-+++|-+|--|+.-+.+=+.|+|+.-..++++++-+.. +|++.+.++.+.|++++.|++.++..+...+.+.+.+++
T Consensus 674 ~feAaSKELAaL~~RA~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 753 (1136)
T KOG4786|consen 674 FFEAASKELAALKERAERLKKLEEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKEIMERKKR 753 (1136)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccccchhhhhccchhhHHHHhhcccccccCcchhhhhhhhhHHHHHHHHhhhhhh
Confidence 34788999988888888888888766666655555543 677777777778888888877776544433344444444
Q ss_pred c
Q 001169 479 D 479 (1133)
Q Consensus 479 ~ 479 (1133)
|
T Consensus 754 E 754 (1136)
T KOG4786|consen 754 E 754 (1136)
T ss_pred c
Confidence 4
No 99
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.40 E-value=23 Score=38.68 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 001169 428 LAESEQKAKRGAAEKEKKAKKKL 450 (1133)
Q Consensus 428 ~~~~e~~~kk~~k~keKk~~~k~ 450 (1133)
++.++|+++-++++||++....+
T Consensus 122 ~~~~~R~~Rla~~~~E~~~~i~e 144 (227)
T KOG4691|consen 122 RLHELRIARLAQEEREQEQRIAE 144 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544433
No 100
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.79 E-value=19 Score=43.07 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=14.1
Q ss_pred CCCCCceE------eecceeeehhhHHHHHHHhh
Q 001169 318 DTPPPIVH------VENDMFVLVDDVLLLLERAA 345 (1133)
Q Consensus 318 e~p~~~~~------v~~d~~~l~~Dll~~leR~a 345 (1133)
.+|..++. |.++||. .-++..|..|+
T Consensus 262 ~lP~~~~vmSE~nEvs~~i~~--~~v~~~l~k~~ 293 (440)
T KOG2357|consen 262 NLPESFVVMSESNEVSGAIFE--DKVVSQLNKYG 293 (440)
T ss_pred CCCcceeeeecchhhhhhhhc--hHHHHHHHHHH
Confidence 55655544 4455554 35666666663
No 101
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=72.72 E-value=18 Score=42.49 Aligned_cols=7 Identities=0% Similarity=0.140 Sum_probs=2.9
Q ss_pred hHHHHHH
Q 001169 400 SNKIEVA 406 (1133)
Q Consensus 400 ~~ri~~A 406 (1133)
++|+...
T Consensus 95 ~~~~~~~ 101 (346)
T TIGR02794 95 EQRAAAE 101 (346)
T ss_pred HHHHHHH
Confidence 3444333
No 102
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=72.35 E-value=21 Score=38.82 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=2.0
Q ss_pred HhhHHhhhHHHHHHHhhhhhHHHHHHH
Q 001169 381 RLTELGRRTVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa~~k~F~~ri~~Ay 407 (1133)
-+...|+=+|-++++..++-++|...|
T Consensus 32 ~L~~yGWyil~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 32 FLSSYGWYILFGCILLYLLWQKLSPSF 58 (190)
T ss_dssp ------------------------HHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 455678777766666666556776666
No 103
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.01 E-value=6.1 Score=47.91 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=22.2
Q ss_pred HhhHHhhhHHHHHH---HhhhhhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001169 381 RLTELGRRTVEIFV---LAHIFSNKIEVAYQEAVALKR-QEELIREEE 424 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa---~~k~F~~ri~~Ay~E~~A~~r-Q~~Ll~E~E 424 (1133)
.++|++..-+..+. .+-.|. +..|+++.-++. |.+|..+.|
T Consensus 451 ~M~Elk~~~~~~~~~~~~~id~~---~ikykdkkrEk~Rq~~l~~~~~ 495 (567)
T KOG0345|consen 451 KMPELKQYKIGEFFFPKPAIDFS---EIKYKDKKREKQRQQKLKVRKE 495 (567)
T ss_pred CcHHHhhhhccceeccCCCcchh---hhcccchHHHHHHHHHHHHHHH
Confidence 34677776666552 234455 566777765544 444443333
No 104
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=71.94 E-value=51 Score=37.01 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=10.5
Q ss_pred hHHHHHHHhhhhhHHHHHHH
Q 001169 388 RTVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 388 r~~~ifa~~k~F~~ri~~Ay 407 (1133)
=+|-+|+|-+.|..-|..+.
T Consensus 15 FlILv~lL~~fl~kPi~~~l 34 (250)
T PRK14474 15 FLILVYLLRRFLYKPIIQVM 34 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666644444443
No 105
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.92 E-value=15 Score=40.43 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Q 001169 414 KRQEELIREEEA-AWLAESEQKAK 436 (1133)
Q Consensus 414 ~rQ~~Ll~E~E~-e~~~~~e~~~k 436 (1133)
..|+++|+|..+ ++++++|-++|
T Consensus 113 eeQ~~rl~ekD~~sek~k~Elrek 136 (216)
T KOG4031|consen 113 EEQMKRLQEKDEASEKLKEELREK 136 (216)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578899999855 44444444443
No 106
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=71.69 E-value=1.3 Score=47.81 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhh
Q 001169 450 LAKQKRNNRKGKEKKREERSSMA 472 (1133)
Q Consensus 450 ~ak~~e~~rk~~e~~~ee~~~~~ 472 (1133)
+.+++++++++++.+++|+...+
T Consensus 36 e~~ee~r~k~ee~~~~~E~~~ee 58 (188)
T PF09756_consen 36 EEREEERRKKEEEEEEEEEKKEE 58 (188)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 107
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=71.15 E-value=28 Score=39.86 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCcccchhHHHHHHhhHHhhhHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 368 EDFNKDSIERDERRLTELGRRTVEI-FVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWL 428 (1133)
Q Consensus 368 ~dvs~dtve~ee~~~~Elgrr~~~i-fa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~ 428 (1133)
+|+..|.-++|-.|..|-+.|---- .-...+ -||....+=+.+...+-++++|.|.+..
T Consensus 184 ed~pdd~e~rD~kry~e~KNr~~r~k~K~~Dn--aRl~~LV~~A~~~DPRIK~fkEqeK~~k 243 (379)
T COG5269 184 EDYPDDMEERDRKRYSEAKNREKRAKLKNQDN--ARLKRLVQIAKKRDPRIKSFKEQEKEMK 243 (379)
T ss_pred hhcCcchhhhhhHHHHHhhhHHHHHhhhchhH--HHHHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 3354444445655555544332110 000111 2455555556666777788888766543
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.40 E-value=5 Score=51.41 Aligned_cols=14 Identities=57% Similarity=0.601 Sum_probs=8.1
Q ss_pred CCCCccccccCCCC
Q 001169 500 KPDVLEDVSDVSDS 513 (1133)
Q Consensus 500 k~d~~e~~sd~sd~ 513 (1133)
||-..++++|-+|+
T Consensus 782 ~p~~k~da~~~~ds 795 (975)
T KOG0112|consen 782 KPHRKGDASDESDS 795 (975)
T ss_pred CCCCcCcCccCccc
Confidence 66666666555443
No 109
>PTZ00234 variable surface protein Vir12; Provisional
Probab=69.94 E-value=6.2 Score=47.54 Aligned_cols=27 Identities=19% Similarity=0.592 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCcc--------cccccccCCCCC
Q 001169 825 GPDLAPATHGYIPQS--------YRNVKMGNPVGS 851 (1133)
Q Consensus 825 g~dpS~~~~sy~pqs--------YrNAi~g~~~~~ 851 (1133)
+++|.+..|+.+--+ |||+|||-.+-+
T Consensus 341 ~~~~~~~~~~~l~~~~d~~dSn~~rniim~~ailG 375 (433)
T PTZ00234 341 APEVNPDTSNFLEKTFGILKSEYFRHSIVGASIIG 375 (433)
T ss_pred CCcCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 777777777766543 999999955433
No 110
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.49 E-value=69 Score=35.08 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 001169 389 TVEIFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~Ay~E~ 410 (1133)
.|-+|++.++|-.+|.....+.
T Consensus 64 liL~~lL~k~~~~pI~~vLe~R 85 (204)
T PRK09174 64 GLFYLFMSRVILPRIGGIIETR 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655555554443
No 111
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=69.41 E-value=22 Score=37.68 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001169 418 ELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 418 ~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
.+++|.++|.|+..|++.-+..
T Consensus 81 r~~EE~~EE~Rl~rere~~q~~ 102 (157)
T PF15236_consen 81 RRREEEEEEERLAREREELQRQ 102 (157)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555666776666544443
No 112
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=68.30 E-value=53 Score=34.06 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=4.7
Q ss_pred HHHHhhcCCC
Q 001169 340 LLERAALEPL 349 (1133)
Q Consensus 340 ~leR~al~~L 349 (1133)
+|-++...||
T Consensus 38 lL~k~l~~Pi 47 (156)
T CHL00118 38 LLNIILYKPL 47 (156)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 113
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=68.12 E-value=45 Score=34.46 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 409 EAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
-++-..|++++...+++.+..+++-++.+.
T Consensus 28 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 57 (159)
T PRK09173 28 ARSLDARADRIKNELAEARRLREEAQQLLA 57 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888777766555444433
No 114
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.11 E-value=69 Score=35.61 Aligned_cols=14 Identities=7% Similarity=0.237 Sum_probs=6.8
Q ss_pred hHHHHHHHhhhhhH
Q 001169 388 RTVEIFVLAHIFSN 401 (1133)
Q Consensus 388 r~~~ifa~~k~F~~ 401 (1133)
=+|=+|+|-+.|..
T Consensus 15 Flil~~lL~kfl~k 28 (246)
T TIGR03321 15 FLILVWLLKRFLYR 28 (246)
T ss_pred HHHHHHHHHHHhHH
Confidence 34445555555533
No 115
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=66.91 E-value=27 Score=39.82 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=57.0
Q ss_pred chhhhhhhhcccccccccccccccccccCCCCcccccccc-CCCCCCCcccCccCCccccccCCcccccCccccccCCCC
Q 001169 978 HLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFS-FPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSV 1056 (1133)
Q Consensus 978 HLDIINDLL~eeq~~g~~~~~~~~~~~~~~~~~~f~~~fs-~~g~~~~~~d~~s~~s~~rf~~t~~y~d~g~~~~y~~~~ 1056 (1133)
-+.||=|||.|--.-|++.---..|.--.-+|-.|-.+|- .||+-+-.+--| .+--.=--..+.++|+.-+
T Consensus 183 ~i~~il~~i~e~pikgsa~py~p~fyd~t~dyggf~M~f~d~pg~pgpapqrg--------gqgpp~~~~sdlmay~r~G 254 (390)
T KOG2192|consen 183 CIKIILDLISESPIKGSAQPYDPNFYDETYDYGGFTMMFDDRPGRPGPAPQRG--------GQGPPPPRGSDLMAYDRRG 254 (390)
T ss_pred HHHHHHHHhhcCCcCCcCCcCCccccCcccccCCceeecCCCCCCCCCCCCCC--------CCCCCCCCccccceeccCC
Confidence 3677788888877777765433333333345666665554 444433211111 1111111122456666554
Q ss_pred ---CcccccccccCccCCCCCCCCccCCCCCCCCCCCC
Q 001169 1057 ---GHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPG 1091 (1133)
Q Consensus 1057 ---~~~~~~r~~~~~~~~~~Y~ng~~D~~~~~~W~~~~ 1091 (1133)
.-|+++=+|+++ --.+|-+|...|+-|+|+.
T Consensus 255 rpG~rydg~vdFs~d----etw~saidtw~~SewqmaY 288 (390)
T KOG2192|consen 255 RPGDRYDGMVDFSAD----ETWPSAIDTWSPSEWQMAY 288 (390)
T ss_pred CCCcccccccccccc----ccCCCcCCCcCcccccccc
Confidence 236666666554 3358899999999999953
No 116
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=66.91 E-value=92 Score=32.72 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 408 QEAVALKRQEELIREEEAAWLAESEQKAK 436 (1133)
Q Consensus 408 ~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~k 436 (1133)
-.++...|+.+.=.++.+++++++|-++-
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~ 59 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQAL 59 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777765554443
No 117
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=66.74 E-value=36 Score=39.34 Aligned_cols=62 Identities=26% Similarity=0.144 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 001169 404 EVAYQEAVALKRQEELIRE--EEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKR 465 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~Ll~E--~E~e~~~~~e~~~kk~~k~keKk~~~k~ak~~e~~rk~~e~~~ 465 (1133)
+...++.|.+.|..+|.+. +|+++++..+.|++|.+..++++.++++..++=-+|.-+..--
T Consensus 158 lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~~~~~~~Ki~Ar~~a~~yl 221 (291)
T PF06098_consen 158 LRRQQRAFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEKEKELREKIAARAFAQQYL 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777776543 3444444444555555555555555555555555554444433
No 118
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=66.27 E-value=24 Score=38.45 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001169 401 NKIEVAYQEAVALKR 415 (1133)
Q Consensus 401 ~ri~~Ay~E~~A~~r 415 (1133)
--+.++.+|++..-|
T Consensus 75 pd~v~~rqEa~eaAR 89 (190)
T PF06936_consen 75 PDVVVRRQEAMEAAR 89 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 333444555554333
No 119
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=66.12 E-value=40 Score=35.98 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=15.8
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001169 386 GRRTVEIFVLAHIFSNKIEVAYQEAV 411 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~ri~~Ay~E~~ 411 (1133)
--=.|-+|++.++|-.+|.....+..
T Consensus 39 I~F~iL~~ll~k~l~~PI~~~l~~R~ 64 (181)
T PRK13454 39 VTLVAIYFVLTRVALPRIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566667776666766665553
No 120
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=64.93 E-value=44 Score=34.98 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001169 440 AEKEKKAKKKLAKQKRNNR 458 (1133)
Q Consensus 440 k~keKk~~~k~ak~~e~~r 458 (1133)
|+++|+.++|+++...+..
T Consensus 85 KkR~KR~KkK~kk~~~k~~ 103 (142)
T PF06658_consen 85 KKRAKRQKKKQKKKKKKKK 103 (142)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 4444444444444444333
No 121
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.82 E-value=65 Score=38.53 Aligned_cols=61 Identities=26% Similarity=0.266 Sum_probs=33.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001169 395 LAHIFSNKIEVAYQEAVALKRQEELIRE-----EEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKR 455 (1133)
Q Consensus 395 ~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E-----~E~e~~~~~e~~~kk~~k~keKk~~~k~ak~~e 455 (1133)
+++-+.-.|+.+-+|---+.||+..++- .|+.++.++|-.++-++..-|--++.+.|-||+
T Consensus 286 lar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK 351 (442)
T PF06637_consen 286 LARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK 351 (442)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777778888777888765543 344444444444433333333334444444443
No 122
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=64.74 E-value=11 Score=45.82 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=9.9
Q ss_pred CCcEEEEEEEecCC
Q 001169 109 CNHLSLFLCVANHD 122 (1133)
Q Consensus 109 ~dyLSLYLeL~s~e 122 (1133)
+.+|+||-++....
T Consensus 177 ~~~l~vyr~~~~~~ 190 (591)
T KOG2505|consen 177 GSVLSVYRCILHVG 190 (591)
T ss_pred CceEEEeeeccccc
Confidence 57888887776543
No 123
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=64.54 E-value=1.1e+02 Score=32.31 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=13.4
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHH
Q 001169 386 GRRTVEIFVLAHIFSNKIEVAYQE 409 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~ri~~Ay~E 409 (1133)
-.=+|=+|+|-+.|...|...+.+
T Consensus 24 i~Flil~~iL~~~~~kpi~~~l~~ 47 (173)
T PRK13460 24 VTFLVVVLVLKKFAWDVILKALDE 47 (173)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344566666667665555555443
No 124
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=63.86 E-value=22 Score=34.92 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=13.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 392 IFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLA 429 (1133)
Q Consensus 392 ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 429 (1133)
+|++.++|...|...+ ..|+.++..++++.+..
T Consensus 13 ~~~l~~~~~~pi~~~l-----~~R~~~I~~~~~~a~~~ 45 (132)
T PF00430_consen 13 FFLLNKFLYKPIKKFL-----DERKAKIQSELEEAEEL 45 (132)
T ss_dssp HHHHHHHTHHHHHHHC-----S--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHH
Confidence 4444555555554443 33444444444444433
No 125
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=63.67 E-value=1.2e+02 Score=31.33 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 001169 389 TVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~Ay 407 (1133)
+|=+|+|.+.+...|....
T Consensus 16 ~il~~iL~~f~~kpi~~~l 34 (159)
T PRK13461 16 IILLLILKHFFFDKIKAVI 34 (159)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4455555555544444443
No 126
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=63.67 E-value=1.1e+02 Score=32.12 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhhHHHHHH
Q 001169 389 TVEIFVLAHIFSNKIEVA 406 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~A 406 (1133)
+|=+|++-+.+...|...
T Consensus 29 lil~~lL~~~l~kpi~~~ 46 (175)
T PRK14472 29 VIVLLILKKIAWGPILSA 46 (175)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 344444444443333333
No 127
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=62.52 E-value=68 Score=39.13 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001169 417 EELIREEEAAWLAES 431 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~ 431 (1133)
+++|||-|-.|.+|+
T Consensus 535 md~lrerelreslek 549 (641)
T KOG3915|consen 535 MDFLRERELRESLEK 549 (641)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554444
No 128
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=62.25 E-value=1.3e+02 Score=31.92 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=12.3
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHH
Q 001169 385 LGRRTVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~ri~~Ay 407 (1133)
+-.=+|-+|+|-+.|...|....
T Consensus 25 iInFliL~~lL~~~l~~pi~~~l 47 (173)
T PRK13453 25 VLTFIVLLALLKKFAWGPLKDVM 47 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666654444443
No 129
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=62.02 E-value=9.8 Score=47.01 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=14.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 393 FVLAHIFSNKIEVAYQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 393 fa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~ 425 (1133)
++.-+++..++..-|-=.=-..+|.++||+++.
T Consensus 408 iA~~R~es~k~~~ry~~~sDvr~QLrflEqldk 440 (563)
T KOG2341|consen 408 IAEHRVESEKSRERYEIISDVRRQLRFLEQLDK 440 (563)
T ss_pred HHHHHHHHhhccchheehHHHHHHHHHHHHHHH
Confidence 443444444444344333334455555555543
No 130
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.77 E-value=82 Score=38.46 Aligned_cols=7 Identities=71% Similarity=0.624 Sum_probs=4.8
Q ss_pred HHHHHhh
Q 001169 339 LLLERAA 345 (1133)
Q Consensus 339 ~~leR~a 345 (1133)
.+|||+|
T Consensus 76 eaLERaA 82 (630)
T KOG0742|consen 76 EALERAA 82 (630)
T ss_pred HHHHHHH
Confidence 4778874
No 131
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.65 E-value=26 Score=36.18 Aligned_cols=45 Identities=27% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 001169 413 LKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNN 457 (1133)
Q Consensus 413 ~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~~k~ak~~e~~ 457 (1133)
-+-|+.|-.+.|+.+...+.+...+++.+|++|.+.|++|.+++-
T Consensus 85 TkAQ~ALk~q~E~~K~~rk~~~k~~re~~k~~kf~lkq~K~k~KH 129 (132)
T PF11208_consen 85 TKAQQALKLQREQRKKERKKRSKEQREAEKERKFELKQQKRKEKH 129 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445565655555544433333222333455566666666655543
No 132
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=60.61 E-value=5 Score=51.19 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchh----HH-HHHHhhHHhhhHHHHHH
Q 001169 337 VLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSI----ER-DERRLTELGRRTVEIFV 394 (1133)
Q Consensus 337 ll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtv----e~-ee~~~~Elgrr~~~ifa 394 (1133)
+|.++|.+.+..|+. .|.+.+++. .+..+. |- -+|+|-||..+||+|..
T Consensus 791 il~iaDqlli~~Lk~---Ice~~ll~k------l~lk~~~~llefaamY~ak~L~~~C~dfic 844 (1267)
T KOG0783|consen 791 ILSIADQLLILELKS---ICEQSLLRK------LNLKTLPTLLEFAAMYHAKELYSRCIDFIC 844 (1267)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhH------hcccchHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445566666666654 466665554 333332 22 69999999999999876
No 133
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.52 E-value=50 Score=42.80 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=8.3
Q ss_pred hHHHHHHhhccccccc
Q 001169 287 TLVMDSLYSGLKALEG 302 (1133)
Q Consensus 287 plvmd~Lf~glk~le~ 302 (1133)
=+++|+++.|+...+.
T Consensus 410 LvLlDE~~~GtDp~eg 425 (782)
T PRK00409 410 LVLFDELGAGTDPDEG 425 (782)
T ss_pred EEEecCCCCCCCHHHH
Confidence 3455555555554444
No 134
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=60.05 E-value=11 Score=41.75 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=6.8
Q ss_pred CCCCCCccc
Q 001169 498 PEKPDVLED 506 (1133)
Q Consensus 498 ~~k~d~~e~ 506 (1133)
+++|-|-||
T Consensus 156 am~PmTkEE 164 (225)
T PF10500_consen 156 AMAPMTKEE 164 (225)
T ss_pred hcCCCCHHH
Confidence 467888887
No 135
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=59.99 E-value=19 Score=47.27 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001169 407 YQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~E~ 425 (1133)
+.|+.|.++-.+|-+-|+|
T Consensus 862 fcekla~kv~~~Le~~e~E 880 (1330)
T KOG0949|consen 862 FCEKLALKVHRQLESMEME 880 (1330)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4477787777777665555
No 136
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=59.73 E-value=1.7e+02 Score=32.74 Aligned_cols=13 Identities=69% Similarity=0.677 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001169 440 AEKEKKAKKKLAK 452 (1133)
Q Consensus 440 k~keKk~~~k~ak 452 (1133)
++||.|+++|+||
T Consensus 187 kEkeeKKk~K~aK 199 (217)
T PF10147_consen 187 KEKEEKKKKKEAK 199 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 3333343333333
No 137
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=59.31 E-value=7.8 Score=42.22 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 001169 416 QEELIREEEA 425 (1133)
Q Consensus 416 Q~~Ll~E~E~ 425 (1133)
.+++++|.++
T Consensus 161 ~~~~~~~~~~ 170 (196)
T PF08229_consen 161 DAKELEEFEK 170 (196)
T ss_pred hHHHHHHHHH
Confidence 3333444333
No 138
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.62 E-value=17 Score=41.42 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001169 411 VALKRQEE 418 (1133)
Q Consensus 411 ~A~~rQ~~ 418 (1133)
+.++.-++
T Consensus 100 ik~k~~k~ 107 (290)
T KOG2689|consen 100 IKQKQIKR 107 (290)
T ss_pred hcchhHHH
Confidence 33333333
No 139
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=58.40 E-value=19 Score=41.98 Aligned_cols=31 Identities=35% Similarity=0.279 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001169 420 IREEEAAWLAESEQKAKRGAAEKEKKAKKKL 450 (1133)
Q Consensus 420 l~E~E~e~~~~~e~~~kk~~k~keKk~~~k~ 450 (1133)
|.|.++.++.+.+|.++..++-|+|..+.++
T Consensus 85 l~ey~~~~~~~rer~E~eL~eLkekq~~r~~ 115 (361)
T KOG3634|consen 85 LGEYEDFDRIEREREEKELKELKEKQEKRKL 115 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666655555555544
No 140
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=57.58 E-value=29 Score=42.39 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=5.8
Q ss_pred hHHHHHhhhcc
Q 001169 233 KLGRLIEDKAR 243 (1133)
Q Consensus 233 hLG~LLqS~~~ 243 (1133)
+|...+.+-++
T Consensus 146 ~f~~~f~~ry~ 156 (460)
T KOG1363|consen 146 TFVDNFGDRYG 156 (460)
T ss_pred HHHHHHHHhcC
Confidence 35555555554
No 141
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=56.13 E-value=7.6 Score=42.33 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001169 407 YQEAVALKRQEELIR 421 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~ 421 (1133)
|.|..-.+.+++..+
T Consensus 156 YAe~~~~~~~~~~~~ 170 (196)
T PF08229_consen 156 YAERKDAKELEEFEK 170 (196)
T ss_pred HHhhhhHHHHHHHHH
Confidence 333333333333333
No 142
>COG4499 Predicted membrane protein [Function unknown]
Probab=55.84 E-value=11 Score=44.76 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 390 VEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 390 ~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~ 425 (1133)
+-+|++++..+ ++---+...-+...+||.|.++
T Consensus 344 ~~~~Al~k~~e---evksn~~lsg~~r~e~lk~~n~ 376 (434)
T COG4499 344 LTLLALTKLYE---EVKSNTDLSGDKRQELLKEYNK 376 (434)
T ss_pred hHHHHHHHHHH---HHhcccCCCchHHHHHHHHHHH
Confidence 33555555443 2222223333344455555544
No 143
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=55.78 E-value=35 Score=42.47 Aligned_cols=27 Identities=30% Similarity=0.173 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001169 418 ELIREEEAAWLAESEQKAKRGAAEKEK 444 (1133)
Q Consensus 418 ~Ll~E~E~e~~~~~e~~~kk~~k~keK 444 (1133)
.=|+++|.-.++|+||+..|+++++.+
T Consensus 430 ~QLrflEqldk~E~Erk~~~ere~l~r 456 (563)
T KOG2341|consen 430 RQLRFLEQLDKAEEERKESREREELLR 456 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346666666666666666555544443
No 144
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.83 E-value=62 Score=41.98 Aligned_cols=9 Identities=11% Similarity=-0.012 Sum_probs=4.9
Q ss_pred CCcccccce
Q 001169 160 HDWGWKKFM 168 (1133)
Q Consensus 160 ~dWGwskFI 168 (1133)
.+|.++.|.
T Consensus 288 ~~~~~P~~~ 296 (782)
T PRK00409 288 LKATFPLFN 296 (782)
T ss_pred CCCccceEc
Confidence 345566664
No 145
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=54.59 E-value=1.3e+02 Score=31.82 Aligned_cols=10 Identities=40% Similarity=0.415 Sum_probs=3.8
Q ss_pred HHHHhhcCCC
Q 001169 340 LLERAALEPL 349 (1133)
Q Consensus 340 ~leR~al~~L 349 (1133)
+|-+++-.||
T Consensus 38 lL~~fl~kPi 47 (167)
T PRK08475 38 ILWYFAAKPL 47 (167)
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 146
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=54.26 E-value=1.7e+02 Score=30.01 Aligned_cols=10 Identities=20% Similarity=0.188 Sum_probs=7.5
Q ss_pred HhhhHHHHHH
Q 001169 385 LGRRTVEIFV 394 (1133)
Q Consensus 385 lgrr~~~ifa 394 (1133)
=|||||..+.
T Consensus 8 RnRRmFG~Ll 17 (131)
T PF04696_consen 8 RNRRMFGGLL 17 (131)
T ss_pred hhhhHHHHHH
Confidence 3889998654
No 147
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=53.91 E-value=1.6e+02 Score=34.12 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 001169 405 VAYQEAVALKRQ 416 (1133)
Q Consensus 405 ~Ay~E~~A~~rQ 416 (1133)
+=|++..+.+|.
T Consensus 109 aqY~D~LaRkR~ 120 (276)
T PF12037_consen 109 AQYEDELARKRY 120 (276)
T ss_pred HHHHHHHHHHHH
Confidence 335555555544
No 148
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=53.77 E-value=2.1e+02 Score=30.09 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=12.4
Q ss_pred HhhhHHHHHHHhhhhhHHHHHH
Q 001169 385 LGRRTVEIFVLAHIFSNKIEVA 406 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~ri~~A 406 (1133)
.-.=+|-||+|-+.+..-|..+
T Consensus 26 iinflIl~~lL~~fl~kpI~~~ 47 (174)
T PRK07352 26 LINLAIVIGLLYYFGRGFLGKI 47 (174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4555666666666664444443
No 149
>PHA00451 protein kinase
Probab=53.36 E-value=32 Score=39.54 Aligned_cols=8 Identities=75% Similarity=0.779 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 001169 418 ELIREEEA 425 (1133)
Q Consensus 418 ~Ll~E~E~ 425 (1133)
+||.|.|+
T Consensus 232 ~LiaEvEa 239 (362)
T PHA00451 232 ELIAEVEA 239 (362)
T ss_pred HHHHHHHH
Confidence 44444444
No 150
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=53.31 E-value=2.3e+02 Score=29.48 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 001169 389 TVEIFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~Ay~E~ 410 (1133)
+|=+|+|-+.|...|..+..+.
T Consensus 19 lil~~lL~~fl~kpi~~~l~~R 40 (164)
T PRK14473 19 LLLIFLLRTFLYRPVLNLLNER 40 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655555555443
No 151
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=52.77 E-value=93 Score=37.77 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 001169 389 TVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ri~~Ay 407 (1133)
+|=+|++-+.|...|....
T Consensus 12 lIl~~lL~kfl~~Pi~~~l 30 (445)
T PRK13428 12 AVIVFLVWRFVVPPVRRLM 30 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444433
No 152
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.57 E-value=78 Score=36.85 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001169 405 VAYQEAVALKRQEEL 419 (1133)
Q Consensus 405 ~Ay~E~~A~~rQ~~L 419 (1133)
+.++|.++.+|++-|
T Consensus 318 ~s~qet~eaKr~e~~ 332 (406)
T KOG3859|consen 318 FSLQETYEAKRNEFL 332 (406)
T ss_pred ccHHHHHHHHHHHHH
Confidence 457788888777644
No 153
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.84 E-value=1.2e+02 Score=33.93 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 001169 396 AHIFSNKIEVAYQEAVALKRQ 416 (1133)
Q Consensus 396 ~k~F~~ri~~Ay~E~~A~~rQ 416 (1133)
+-++ .|+....++-+.+..+
T Consensus 110 ~lvI-~R~~~ll~~l~~l~~~ 129 (216)
T KOG1962|consen 110 SLVI-RRLHTLLRELATLRAN 129 (216)
T ss_pred HHHH-HHHHHHHHHHHHHHhh
Confidence 3444 5666666666655555
No 154
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=51.82 E-value=1.4e+02 Score=32.74 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=9.9
Q ss_pred HHHHHHHhhcCCCC
Q 001169 337 VLLLLERAALEPLP 350 (1133)
Q Consensus 337 ll~~leR~al~~Lp 350 (1133)
|+.+|-++.-.|+.
T Consensus 61 lv~lL~k~l~kPi~ 74 (205)
T PRK06231 61 LLLLGIFLFWKPTQ 74 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 34578888888874
No 155
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=51.80 E-value=27 Score=42.75 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=15.2
Q ss_pred CchHHHHhhhhhHHHhhHHHHHhhhcc
Q 001169 217 TNVEQICRRFVEERRGKLGRLIEDKAR 243 (1133)
Q Consensus 217 sNLgaTC~~fved~~~hLG~LLqS~~~ 243 (1133)
..|+. |.+-|+.+-.-|..|-+...+
T Consensus 190 eg~~e-y~~siekln~~ls~lqq~mqr 215 (708)
T KOG3654|consen 190 EGLGE-YNRSIEKLNAALSSLQQDMQR 215 (708)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33555 666677666666665555543
No 156
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.43 E-value=1.5e+02 Score=30.82 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=11.5
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 001169 391 EIFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 391 ~ifa~~k~F~~ri~~Ay~E~ 410 (1133)
=+|++.+.|-..|.....+.
T Consensus 21 l~~ll~~~l~~pi~~~l~~R 40 (164)
T PRK14471 21 LLLLLAKFAWKPILGAVKER 40 (164)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34445666666666665444
No 157
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=51.36 E-value=19 Score=39.75 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001169 415 RQEELIREEEAAWLA 429 (1133)
Q Consensus 415 rQ~~Ll~E~E~e~~~ 429 (1133)
+|.+.|+|.++++++
T Consensus 120 ~~~~~i~ekD~~e~~ 134 (225)
T PF01086_consen 120 ERDKRIEEKDAEEEE 134 (225)
T ss_dssp HHTTTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455554444333
No 158
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=37 Score=37.49 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHH--HHHhhhhhhhHHHHHHhhhhhh-hhhcccC
Q 001169 440 AEKEKKAKKKLAK--QKRNNRKGKEKKREERSSMALS-DRLEDEN 481 (1133)
Q Consensus 440 k~keKk~~~k~ak--~~e~~rk~~e~~~ee~~~~~~~-~~~~~~~ 481 (1133)
.+.|+||+..+++ +|+++.+++|-+++|+..++.| ++.-||.
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEEs 212 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEAEEKRKREREWQKNFEES 212 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667666666644 4445556666666665555443 3333443
No 159
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=51.16 E-value=22 Score=43.44 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=7.5
Q ss_pred HHHhhhhhhhHHHHH
Q 001169 453 QKRNNRKGKEKKREE 467 (1133)
Q Consensus 453 ~~e~~rk~~e~~~ee 467 (1133)
|||+.+||+|+++.|
T Consensus 430 eeer~~keee~arre 444 (708)
T KOG3654|consen 430 EEERAPKEEEVARRE 444 (708)
T ss_pred HhhhcchhhhhhHHH
Confidence 344555555555543
No 160
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=50.76 E-value=79 Score=36.96 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCCccccccCCCCCCCCccccCCCCCCCCCCCCCcCCCCcccCCC
Q 001169 501 PDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDASEVIPP 545 (1133)
Q Consensus 501 ~d~~e~~sd~sd~~d~~~e~~~~d~edr~~s~v~w~~d~~e~~~~ 545 (1133)
+.-+|+.+.+.-+ .+--..+.+|.++--.+|.+-.-|+..+
T Consensus 343 ~~~~ee~tespa~----g~eptstp~a~es~t~~~t~~~~~~p~~ 383 (410)
T KOG4715|consen 343 ETHLEESTESPAN----GEEPTSTPEAKESGTTGTTTENKEKPEE 383 (410)
T ss_pred cccccccccCCCC----CCCCCCCccccccccccCccccccCcch
Confidence 3445555444332 2333456788888888998876665443
No 161
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.45 E-value=84 Score=36.20 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 407 YQEAVALKRQEELIREEEAAWLAES 431 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~E~e~~~~~ 431 (1133)
.+.+.....+.+|+|=++.++++.+
T Consensus 100 ik~k~~k~~e~e~~E~~~~~k~~~k 124 (290)
T KOG2689|consen 100 IKQKQIKREELELREALEREKQRRK 124 (290)
T ss_pred hcchhHHHHHHHHHHhhhhHHhhhh
Confidence 3445556666777766666665544
No 162
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=50.33 E-value=52 Score=40.30 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.8
Q ss_pred ccCCCCC
Q 001169 493 DAQPLPE 499 (1133)
Q Consensus 493 ~~~~~~~ 499 (1133)
+|..|..
T Consensus 382 ~~~~l~i 388 (460)
T KOG1363|consen 382 EAITVAI 388 (460)
T ss_pred cceeeEE
Confidence 3444443
No 163
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=50.26 E-value=79 Score=39.45 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=12.6
Q ss_pred HhhhhhhhHHHHHHhhhhhhhhhcccCCch
Q 001169 455 RNNRKGKEKKREERSSMALSDRLEDENPSD 484 (1133)
Q Consensus 455 e~~rk~~e~~~ee~~~~~~~~~~~~~~~~~ 484 (1133)
|+.|-|.|..+-|+ .+.+++++.+..++.
T Consensus 666 ERErmErERLEreR-M~ve~eRr~eqeRih 694 (940)
T KOG4661|consen 666 ERERMERERLERER-MKVEEERRDEQERIH 694 (940)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhcchhhhhh
Confidence 33334444444444 334444444444544
No 164
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.01 E-value=70 Score=39.63 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=26.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 391 EIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 391 ~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
+|..+.--+...++..|.+.+-...+.-|++=+-.|+ .-+++++|..
T Consensus 491 ~iL~l~d~lR~~~l~~~g~~led~~g~~lvk~v~~e~-~l~~~eek~~ 537 (586)
T KOG2007|consen 491 EILELCDTLRDSDLLELGVRLEDRKGSTLVKAVDREE-LLQEREEKTS 537 (586)
T ss_pred HHHHHhHHHHHhhHHHhhhHHHhCCchHHHHHhhhHH-HHHHHHHHhH
Confidence 6666666665555666666665555555655555554 3344444433
No 165
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.83 E-value=19 Score=41.42 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=15.0
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhh
Q 001169 450 LAKQKRNNRKGKEKKREERSSMA 472 (1133)
Q Consensus 450 ~ak~~e~~rk~~e~~~ee~~~~~ 472 (1133)
++||||.+|||+|-+|.|++...
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Confidence 46677777777776666655544
No 166
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=49.28 E-value=1.9e+02 Score=29.01 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=8.8
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 001169 392 IFVLAHIFSNKIEVAYQE 409 (1133)
Q Consensus 392 ifa~~k~F~~ri~~Ay~E 409 (1133)
+|+|.++|-..|.....+
T Consensus 19 ~~ll~~~l~~pi~~~l~~ 36 (140)
T PRK07353 19 TFILNALFYKPVGKVVEE 36 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555544444433
No 167
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=49.17 E-value=43 Score=35.61 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=12.4
Q ss_pred HHHhhHHhhhHHHHHHHhhhh
Q 001169 379 ERRLTELGRRTVEIFVLAHIF 399 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F 399 (1133)
++|++--||.+.+.-+ -..|
T Consensus 88 DKRlaadgr~l~~~~I-Nd~F 107 (158)
T PF02731_consen 88 DKRLAADGRGLQDVEI-NDKF 107 (158)
T ss_pred HHHHhhcccccCCccc-cHHH
Confidence 5666656777766655 4555
No 168
>PF08243 SPT2: SPT2 chromatin protein; InterPro: IPR013256 This entry includes the Saccharomyces cerevisiae (Baker's yeast) protein SPT2 which is a chromatin protein involved in transcriptional regulation []. These proteins shows conservation of several domains across numerous species, including having a cluster of positively charged amino acids. This cluster probably functions in the binding properties of the proteins []. Sin1p/Spt2p probably modulates the local chromatin structure by binding two strands of double-stranded DNA at their crossover point. Sin1p/Spt2p has sequence similarity to HMG1 and serves as a negative transcriptional regulator of a small family of genes that are activated by the SWI/SNF chromatin-remodelling complex. It is also involved in maintaining the integrity of chromatin during transcription elongation. Sin1p/Spt2 is required for, and is directly involved in, the efficient recruitment of the mRNA cleavage/polyadenylation complex []. Spt2 is also involved in regulating levels of histone H3 over transcribed regions [].
Probab=49.15 E-value=24 Score=35.52 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001169 402 KIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 402 ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-+++.|.+....+.+-..|..+|.++.++.|++.++.+
T Consensus 73 dMEA~~~~I~~EE~rS~r~A~~ED~~e~~~e~~~~~~K 110 (116)
T PF08243_consen 73 DMEASFADIEKEEKRSARIARLEDEREERREEEEEREK 110 (116)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35677888877788877777777766555555554444
No 169
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=49.12 E-value=1.9e+02 Score=29.75 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=6.4
Q ss_pred HHHHhhhhhHHHHHH
Q 001169 392 IFVLAHIFSNKIEVA 406 (1133)
Q Consensus 392 ifa~~k~F~~ri~~A 406 (1133)
+|++.+.|-..|...
T Consensus 21 ~~~l~kfl~kPi~~~ 35 (141)
T PRK08476 21 IVILNSWLYKPLLKF 35 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 170
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=48.93 E-value=1.2e+02 Score=33.81 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001169 404 EVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQK 454 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~~k~ak~~ 454 (1133)
.+.|.-.||-=+++.|..|.|.+....+=+..+-.+++-|.|..+..+|.+
T Consensus 166 qtlyeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e 216 (259)
T KOG4001|consen 166 QTLYESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLE 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 466778888888999988887665444433333334444544444444443
No 171
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.68 E-value=2e+02 Score=37.47 Aligned_cols=15 Identities=0% Similarity=0.113 Sum_probs=8.0
Q ss_pred ceeecCeEEEEEEEe
Q 001169 89 AFEVGGYKWYILIYP 103 (1133)
Q Consensus 89 ~FsVGGhkWRI~vYP 103 (1133)
.+++.+-.|.|-+-.
T Consensus 183 ~it~r~~r~vipvk~ 197 (771)
T TIGR01069 183 IVTIRNGRYVLPLKS 197 (771)
T ss_pred eEEEECCEEEEEeeH
Confidence 345555566665543
No 172
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=48.31 E-value=46 Score=41.64 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=3.6
Q ss_pred cccccccc
Q 001169 297 LKALEGQS 304 (1133)
Q Consensus 297 lk~le~~t 304 (1133)
++.|+-.+
T Consensus 512 ~~~l~~~~ 519 (758)
T KOG0343|consen 512 VRFLNKKA 519 (758)
T ss_pred ccchhhHH
Confidence 44444444
No 173
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=47.97 E-value=3.2e+02 Score=27.90 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=8.8
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 001169 392 IFVLAHIFSNKIEVAYQE 409 (1133)
Q Consensus 392 ifa~~k~F~~ri~~Ay~E 409 (1133)
+|++-+++...|.....+
T Consensus 18 ~~il~~~~~~pi~~~l~~ 35 (156)
T PRK05759 18 VWFIMKFVWPPIMKALEE 35 (156)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 344455555555555443
No 174
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=46.81 E-value=37 Score=41.38 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=13.4
Q ss_pred cccCCCCCCCCCCCcccCC
Q 001169 603 NQKSPSRGKNQRGKSTYDG 621 (1133)
Q Consensus 603 ~~~s~~rg~~~~~~~~~~~ 621 (1133)
-...||-|--+.+....++
T Consensus 635 Gkl~P~~GE~RKnhrL~iG 653 (807)
T KOG0066|consen 635 GKLDPNDGELRKNHRLRIG 653 (807)
T ss_pred cCCCCCcchhhccceeeee
Confidence 4578999987777655544
No 175
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=46.27 E-value=10 Score=43.10 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=28.7
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCH
Q 001169 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQ 256 (1133)
Q Consensus 215 PpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~ 256 (1133)
++.|+|.|| ||+.+||...+...||.+++...+
T Consensus 1 GL~NlGnTC---------Y~NS~LQ~L~~~~~fr~~ll~~~~ 33 (327)
T cd02664 1 GLINLGNTC---------YMNSVLQALFMAKDFRRQVLSLNL 33 (327)
T ss_pred CCcCCcccH---------HHHHHHHHHHCcHHHHHHHHcCCc
Confidence 578999999 999999999998899988777653
No 176
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=46.23 E-value=7.6 Score=43.63 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=29.8
Q ss_pred eeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 212 VRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 212 V~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
++||+.|+|.|| ||+.+||...+...||.+++..
T Consensus 1 g~~GL~N~GntC---------Y~NsvLQ~L~~~~~f~~~~l~~ 34 (334)
T cd02659 1 GYVGLKNQGATC---------YMNSLLQQLYMTPEFRNAVYSI 34 (334)
T ss_pred CCCCcccCCcch---------HHHHHHHHHhcCHHHHHHHHcC
Confidence 468999999999 9999999999888888876664
No 177
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=46.09 E-value=63 Score=38.75 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=12.1
Q ss_pred HHHhhHHhhhHHHHHHHhhhh
Q 001169 379 ERRLTELGRRTVEIFVLAHIF 399 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F 399 (1133)
++||+-.||-+-++-+ -.+|
T Consensus 261 dkRlaadgrglq~v~I-NdnF 280 (506)
T KOG2441|consen 261 DKRLAADGRGLQDVHI-NDNF 280 (506)
T ss_pred hhhhhhccCCccccee-cccH
Confidence 5677777777665534 4444
No 178
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=45.77 E-value=61 Score=32.56 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Q 001169 441 EKEKKAKKKLAKQKRNNRKGKEKK 464 (1133)
Q Consensus 441 ~keKk~~~k~ak~~e~~rk~~e~~ 464 (1133)
.|-|-++.||||+|-...-++=+.
T Consensus 26 Rk~K~~RLKQAKeEA~~Eie~yr~ 49 (108)
T KOG1772|consen 26 RKRKLRRLKQAKEEAEKEIEEYRS 49 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665544433333
No 179
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=45.68 E-value=17 Score=47.39 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhh
Q 001169 419 LIREEEAAWLAESEQKAKRGA-------------AEKEKKAKKKLAKQKRNNRKGKEKKREERSSMA 472 (1133)
Q Consensus 419 Ll~E~E~e~~~~~e~~~kk~~-------------k~keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~ 472 (1133)
+=-|.|++++++.|+++|+.. |+|-+|+.+|..|..+..+.-.+++++|++++.
T Consensus 549 se~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~keT~~a~k~EkeRrk 615 (1567)
T KOG1015|consen 549 SESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKETQNALKEEKERRK 615 (1567)
T ss_pred ccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchhHHHHHHHHHHHHH
Confidence 445666666666777777652 444456666677776655544455555544443
No 180
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=45.39 E-value=30 Score=42.94 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 001169 399 FSNKIEVAYQEAVALKRQEE 418 (1133)
Q Consensus 399 F~~ri~~Ay~E~~A~~rQ~~ 418 (1133)
++|||+-|-.++-..-|+++
T Consensus 351 ~~qr~lkas~dar~rar~ek 370 (645)
T KOG0681|consen 351 KKQRILKASTDARLRARVEK 370 (645)
T ss_pred HHHHHHHhhhhhhccccccc
Confidence 45777878777766666666
No 181
>COG5644 Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=58 Score=40.62 Aligned_cols=29 Identities=41% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001169 412 ALKRQEELIREEEAAWLAESEQKAKRGAAEKEK 444 (1133)
Q Consensus 412 A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keK 444 (1133)
-.-+|++|.+||.= .+||||||.+|-|-|
T Consensus 373 ~rt~qlr~mrelmf----reerkakr~~kiksk 401 (869)
T COG5644 373 ERTRQLRFMRELMF----REERKAKRVAKIKSK 401 (869)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHhHH
Confidence 34577788888753 456788887755544
No 182
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.29 E-value=1.7e+02 Score=38.20 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=7.6
Q ss_pred hHHHHHHhhccccccc
Q 001169 287 TLVMDSLYSGLKALEG 302 (1133)
Q Consensus 287 plvmd~Lf~glk~le~ 302 (1133)
=+++|.++.|+...|.
T Consensus 405 LvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 405 LVLFDELGAGTDPDEG 420 (771)
T ss_pred EEEecCCCCCCCHHHH
Confidence 3445555555544443
No 183
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=44.76 E-value=94 Score=36.64 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 001169 607 PSRGKNQR 614 (1133)
Q Consensus 607 ~~rg~~~~ 614 (1133)
-++||-|.
T Consensus 202 ~~mtKeQq 209 (361)
T KOG3634|consen 202 MGMTKEQQ 209 (361)
T ss_pred hcccHHHH
Confidence 34455543
No 184
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=44.61 E-value=3.8e+02 Score=28.57 Aligned_cols=18 Identities=39% Similarity=0.300 Sum_probs=7.3
Q ss_pred HHHHhhhhhhhhhcccCC
Q 001169 465 REERSSMALSDRLEDENP 482 (1133)
Q Consensus 465 ~ee~~~~~~~~~~~~~~~ 482 (1133)
++|+.++..+..+..+.+
T Consensus 100 aeEr~~~~Eer~~~~eer 117 (149)
T PF15346_consen 100 AEERLRMEEERRRELEER 117 (149)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 185
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=43.54 E-value=2.7e+02 Score=32.82 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=23.5
Q ss_pred HhhhHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 385 LGRRTVEIFV-LAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLA 429 (1133)
Q Consensus 385 lgrr~~~ifa-~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 429 (1133)
-+||||-.+. ...-|++ ..-+..-++.+|.++.+-+|+..+.
T Consensus 140 RNRRmFG~LlGTL~KFkq---E~kr~t~rq~KraEieqKlEeq~~e 182 (340)
T KOG3756|consen 140 RNRRMFGLLLGTLQKFKQ---ESKRATERQVKRAEIEQKLEEQAEE 182 (340)
T ss_pred HhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998433 4556763 2222222566666776666554433
No 186
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=43.46 E-value=54 Score=33.40 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001169 409 EAVALKRQEELIREEEA 425 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~ 425 (1133)
+++|..+=.=+|-|..+
T Consensus 75 d~IA~~rVqPvLdeI~e 91 (126)
T PF12757_consen 75 DAIARKRVQPVLDEIDE 91 (126)
T ss_pred HHHHHHhcCCchHHHHH
Confidence 44455555555555544
No 187
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.41 E-value=55 Score=39.76 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=16.8
Q ss_pred hhhHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 386 GRRTVE-IFVLAHIFSNKIEVAYQEAVALKRQEELIREE 423 (1133)
Q Consensus 386 grr~~~-ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~ 423 (1133)
-+.+|+ ||+++.+. --.|+|-+-+--=+..++.+
T Consensus 103 ~~~~FelifAFDEiv----sLGyre~v~laQikty~eMd 137 (512)
T KOG2635|consen 103 LENAFELIFAFDEIV----SLGYRENVNLAQIKTYLEMD 137 (512)
T ss_pred HHhhhhhhhccchhh----hhcccccccHHHhhhhhccc
Confidence 345666 44534433 34488877544333344433
No 188
>PRK04863 mukB cell division protein MukB; Provisional
Probab=43.25 E-value=1.9e+02 Score=40.52 Aligned_cols=41 Identities=12% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHHHHhhHHhhhHHH--HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001169 377 RDERRLTELGRRTVE--IFVLAHIFSNKIEVAYQEAVALKRQE 417 (1133)
Q Consensus 377 ~ee~~~~Elgrr~~~--ifa~~k~F~~ri~~Ay~E~~A~~rQ~ 417 (1133)
+.++..++...+-+. +|+|+.+...|-+.+|.+++-.+...
T Consensus 941 r~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~ 983 (1486)
T PRK04863 941 KQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKN 983 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcc
Confidence 355555555555543 89999999999999999999855543
No 189
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.16 E-value=4.3e+02 Score=30.04 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHhh
Q 001169 402 KIEVAYQEAVALK-RQEELIREEEAAW-LAESEQKAKRG 438 (1133)
Q Consensus 402 ri~~Ay~E~~A~~-rQ~~Ll~E~E~e~-~~~~e~~~kk~ 438 (1133)
+++..++|..+++ ++.+|++|.+++. +.+.|-+++++
T Consensus 62 ~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~ 100 (246)
T KOG4657|consen 62 NLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555543 5667777665544 33445555554
No 190
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=43.13 E-value=2.4e+02 Score=30.07 Aligned_cols=11 Identities=18% Similarity=-0.167 Sum_probs=6.6
Q ss_pred HHHHHhhcCCC
Q 001169 339 LLLERAALEPL 349 (1133)
Q Consensus 339 ~~leR~al~~L 349 (1133)
.+|-+++-.|+
T Consensus 39 ~lL~~fl~kPI 49 (184)
T CHL00019 39 GVLIYFGKGVL 49 (184)
T ss_pred HHHHHHhHhHH
Confidence 45666666665
No 191
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=42.88 E-value=99 Score=33.74 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---HH-----HHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhcc
Q 001169 412 ALKRQEELIREEEAAWLAESEQKAKRGA---AE-----KEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 479 (1133)
Q Consensus 412 A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~---k~-----keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~~~ 479 (1133)
...++..+++|+=+++-...-+.-+... .- |.-+..+..+|..|...|.-|+..|-++.++.++.+++
T Consensus 116 ~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk 191 (192)
T COG5374 116 VVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191 (192)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 4567888888876665332211111111 11 11222333355566666677777777776666655543
No 192
>smart00784 SPT2 SPT2 chromatin protein. This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation PUBMED:15563464.
Probab=42.51 E-value=42 Score=33.88 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001169 403 IEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 403 i~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
+++.|.+.+..+.+-..|..+|.++.++.|+++|+.
T Consensus 69 MEa~~~~i~~EE~~s~r~a~~ED~~e~~~e~~~~~~ 104 (111)
T smart00784 69 MEAGGADIQEEERRSARLARLEDREEERLEKEEERE 104 (111)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 556666666666666666666555555444444433
No 193
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=42.29 E-value=1.1e+02 Score=37.01 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=8.0
Q ss_pred hhhhhhcccCCCCC
Q 001169 486 KKEFIVEDAQPLPE 499 (1133)
Q Consensus 486 ~~~~~~~~~~~~~~ 499 (1133)
++..++.++.++++
T Consensus 118 ~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 118 EMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555556666665
No 194
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=2.5e+02 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=10.0
Q ss_pred HHHHHHHhhcCCCCC
Q 001169 337 VLLLLERAALEPLPP 351 (1133)
Q Consensus 337 ll~~leR~al~~Lp~ 351 (1133)
|+++--.+++.|..+
T Consensus 61 Lial~kQv~~Gp~n~ 75 (469)
T KOG3878|consen 61 LIALKKQVALGPFNT 75 (469)
T ss_pred hhhhHhhhhcCCCCc
Confidence 555666777777765
No 195
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=41.78 E-value=2.5e+02 Score=34.73 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhh
Q 001169 439 AAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRL 477 (1133)
Q Consensus 439 ~k~keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~ 477 (1133)
++|||.+.++=++-++|-.|.+++..+|....|...+|.
T Consensus 484 krEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKL 522 (527)
T PF15066_consen 484 KREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKL 522 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 366777777777888888888888888877766655543
No 196
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=41.59 E-value=1.1e+02 Score=35.40 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 001169 407 YQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRK 459 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~~k~ak~~e~~rk 459 (1133)
|+++. ..-++.|+-|++..+++.+|.|.+-..-+||=+..|+.-.|.-++|+
T Consensus 242 YRqKk-Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r~ 293 (294)
T KOG4571|consen 242 YRQKK-RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKRV 293 (294)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88886 45567788888888888888888777788888888887666555553
No 197
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=41.45 E-value=44 Score=36.14 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 001169 432 EQKAKRGA 439 (1133)
Q Consensus 432 e~~~kk~~ 439 (1133)
++|+|+.+
T Consensus 14 ~kkakka~ 21 (177)
T PF09831_consen 14 KKKAKKAK 21 (177)
T ss_pred HHHHHHHH
Confidence 33444443
No 198
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=39.25 E-value=28 Score=45.10 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=14.7
Q ss_pred CCCCCCccc-cccCCCCCCC
Q 001169 498 PEKPDVLED-VSDVSDSVDG 516 (1133)
Q Consensus 498 ~~k~d~~e~-~sd~sd~~d~ 516 (1133)
..|-|..++ +||+.|-++=
T Consensus 784 ~~k~da~~~~dsd~~~~~sl 803 (975)
T KOG0112|consen 784 HRKGDASDESDSDSNDKLSL 803 (975)
T ss_pred CCcCcCccCccccccCcccc
Confidence 357788888 8999998763
No 199
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=39.12 E-value=24 Score=43.56 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=10.0
Q ss_pred hhhhHHHhhHHHHHhhh
Q 001169 225 RFVEERRGKLGRLIEDK 241 (1133)
Q Consensus 225 ~fved~~~hLG~LLqS~ 241 (1133)
.|...+..||-.+|..+
T Consensus 125 ~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 125 EFKERLDEYLRPQLRKG 141 (517)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 35555566777766543
No 200
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=38.52 E-value=99 Score=30.33 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001169 403 IEVAYQEAVALKRQE 417 (1133)
Q Consensus 403 i~~Ay~E~~A~~rQ~ 417 (1133)
|.....+....+.+-
T Consensus 35 I~~~~~~a~~~~~ea 49 (132)
T PF00430_consen 35 IQSELEEAEELKEEA 49 (132)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHH
Confidence 444444444333333
No 201
>PHA03247 large tegument protein UL36; Provisional
Probab=38.48 E-value=1.2e+03 Score=35.13 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.8
Q ss_pred HHHHHhhccc
Q 001169 289 VMDSLYSGLK 298 (1133)
Q Consensus 289 vmd~Lf~glk 298 (1133)
.+.+|...|+
T Consensus 2226 aLaalWs~L~ 2235 (3151)
T PHA03247 2226 ALAALWSCMF 2235 (3151)
T ss_pred HHHHHHHhhC
Confidence 3444555554
No 202
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=38.37 E-value=5.9e+02 Score=31.68 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=15.5
Q ss_pred hHHHHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001169 375 IERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAV 411 (1133)
Q Consensus 375 ve~ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~ 411 (1133)
|..=..+...|.+++-++-. .++.+|+.+..+..
T Consensus 253 i~~a~~~i~~L~~~l~~l~~---~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 253 IAHAKERIDALQKELAELKE---EEEEELERALEEQR 286 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44333344456665555433 33344444444443
No 203
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.26 E-value=4.2e+02 Score=28.34 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=4.8
Q ss_pred hhhhhHHHHHHH
Q 001169 396 AHIFSNKIEVAY 407 (1133)
Q Consensus 396 ~k~F~~ri~~Ay 407 (1133)
-|.|-.+|...+
T Consensus 28 ~kf~~ppI~~iL 39 (155)
T PRK06569 28 YKFITPKAEEIF 39 (155)
T ss_pred HHHhHHHHHHHH
Confidence 444333444333
No 204
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=37.98 E-value=2.2e+02 Score=37.74 Aligned_cols=119 Identities=24% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCcccchhHHHHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001169 367 GEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKA 446 (1133)
Q Consensus 367 ~~dvs~dtve~ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~ 446 (1133)
+.|...-..+-..++-.||-+-|=+-.. ...+.-..-++-|-.||+++ ..+....+.|+-|..-+||+|.
T Consensus 1024 ~~d~~~r~~el~~rq~~el~~~~~~~~~---------~e~e~k~~hl~~~~~~l~kl-~~eaq~~Q~k~LK~~~e~e~kE 1093 (1189)
T KOG1265|consen 1024 NSDNAGRVRELVNRQTQELLEMRREQYE---------EEFELKEEHLKEQISLLRKL-LSEAQTNQTKALKESLEKETKE 1093 (1189)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhh-----hhHHHHHHhhhh----------hhhhhcccCCchhhhhhhhcccC
Q 001169 447 KKKLAKQKRNNRKG-----KEKKREERSSMA----------LSDRLEDENPSDEKKEFIVEDAQ 495 (1133)
Q Consensus 447 ~~k~ak~~e~~rk~-----~e~~~ee~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 495 (1133)
.+|...++..++-. ++|++.|+..+. ++-|++++...+..+..++++.+
T Consensus 1094 lk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~ 1157 (1189)
T KOG1265|consen 1094 LKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLE 1157 (1189)
T ss_pred HHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 205
>PRK11637 AmiB activator; Provisional
Probab=37.69 E-value=3.4e+02 Score=32.58 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=4.9
Q ss_pred CCCCCCCcC
Q 001169 528 RDTSPVNWD 536 (1133)
Q Consensus 528 r~~s~v~w~ 536 (1133)
+.+++..|-
T Consensus 314 ~i~~~fg~~ 322 (428)
T PRK11637 314 PTLHRFGEQ 322 (428)
T ss_pred CccCCCCCC
Confidence 555555554
No 206
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=37.63 E-value=12 Score=44.84 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=32.6
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
..+.||+.|+|.|| +|+.+||...+...||.+++...
T Consensus 116 ~~G~vGL~NlGnTC---------YmNsvLQ~L~~~p~lr~~~l~~~ 152 (440)
T cd02669 116 LPGFVGLNNIKNND---------YANVIIQALSHVKPIRNFFLLYE 152 (440)
T ss_pred cCCccCccCCCCch---------HHHHHHHHHHCCHHHHHHHhhcc
Confidence 35789999999999 99999999999999999876543
No 207
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.24 E-value=6.4e+02 Score=30.99 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.7
Q ss_pred hhHHHHHHHhhcCC
Q 001169 335 DDVLLLLERAALEP 348 (1133)
Q Consensus 335 ~Dll~~leR~al~~ 348 (1133)
--+|.++-|.+..|
T Consensus 118 a~~L~A~~r~g~~p 131 (420)
T COG4942 118 AEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHhccCCC
Confidence 44667778877776
No 208
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.15 E-value=6.1e+02 Score=28.05 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=19.7
Q ss_pred HhhHHhhhHHHHHHHhhhhhHHHHHHHH
Q 001169 381 RLTELGRRTVEIFVLAHIFSNKIEVAYQ 408 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa~~k~F~~ri~~Ay~ 408 (1133)
++.++.-++.+....-..++.+|..+..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777766777777777766
No 209
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=36.96 E-value=66 Score=36.26 Aligned_cols=7 Identities=57% Similarity=0.757 Sum_probs=3.8
Q ss_pred HHHHHHH
Q 001169 418 ELIREEE 424 (1133)
Q Consensus 418 ~Ll~E~E 424 (1133)
.||+|||
T Consensus 150 ~Ll~ELe 156 (244)
T PF04889_consen 150 ALLRELE 156 (244)
T ss_pred HHHHHHH
Confidence 4555664
No 210
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.46 E-value=1.2e+02 Score=35.43 Aligned_cols=8 Identities=25% Similarity=0.297 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 001169 429 AESEQKAK 436 (1133)
Q Consensus 429 ~~~e~~~k 436 (1133)
++.|++++
T Consensus 151 ~~~E~~~~ 158 (309)
T TIGR00570 151 LEFEKEEE 158 (309)
T ss_pred HHHHHHHH
Confidence 33333333
No 211
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=36.33 E-value=1.9e+02 Score=30.91 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhHHHHH
Q 001169 418 ELIREEEAAWLA-ESEQKAKRGAAEKEK 444 (1133)
Q Consensus 418 ~Ll~E~E~e~~~-~~e~~~kk~~k~keK 444 (1133)
+.++++|.+.++ +++.++.|..++++.
T Consensus 71 ~r~k~~E~err~~EE~~EE~Rl~rere~ 98 (157)
T PF15236_consen 71 RRQKQEEEERRRREEEEEEERLAREREE 98 (157)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444433 555566666655553
No 212
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=36.24 E-value=2.1e+02 Score=32.58 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=4.4
Q ss_pred hHHHHHHHhh
Q 001169 388 RTVEIFVLAH 397 (1133)
Q Consensus 388 r~~~ifa~~k 397 (1133)
-.++-+.+.|
T Consensus 87 ~aye~Wl~~K 96 (264)
T PF13904_consen 87 SAYEEWLSAK 96 (264)
T ss_pred chHHHHHHHH
Confidence 4455444333
No 213
>PLN02316 synthase/transferase
Probab=36.21 E-value=78 Score=42.38 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=15.3
Q ss_pred cCCCCcccCCCccceeeecCccCCCccc
Q 001169 573 DDSSSTCSTDSVPSVVMYGPYKGNSLAN 600 (1133)
Q Consensus 573 ~~~sstcs~ds~~~~~~~g~~~~~~~~~ 600 (1133)
=+-++++.+.+ +.|.+.|.| |+|++
T Consensus 335 YN~~~~~L~~~-~~v~i~gg~--N~W~~ 359 (1036)
T PLN02316 335 YNRSSGPLAHS-TEIWIHGGY--NNWID 359 (1036)
T ss_pred ECCCCCCCCCC-CcEEEEEeE--cCCCC
Confidence 34455666653 667788754 66654
No 214
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=35.96 E-value=2.3e+02 Score=32.91 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=8.6
Q ss_pred hhHHHHHHH----hhhhhH
Q 001169 387 RRTVEIFVL----AHIFSN 401 (1133)
Q Consensus 387 rr~~~ifa~----~k~F~~ 401 (1133)
+|++|+... .++|++
T Consensus 219 ~~LV~~A~~~DPRIK~fkE 237 (379)
T COG5269 219 KRLVQIAKKRDPRIKSFKE 237 (379)
T ss_pred HHHHHHHHhcCcchhhHHH
Confidence 466777662 356654
No 215
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=35.66 E-value=81 Score=33.37 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=7.1
Q ss_pred eeehhhHHHHHHHh
Q 001169 331 FVLVDDVLLLLERA 344 (1133)
Q Consensus 331 ~~l~~Dll~~leR~ 344 (1133)
|+-++|.+.+|-.+
T Consensus 30 Fi~s~dpi~~L~~~ 43 (159)
T PF11861_consen 30 FIKSEDPIDLLGSA 43 (159)
T ss_pred HhcCCcHHHHHHHc
Confidence 33345555555554
No 216
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=35.65 E-value=1.6e+02 Score=34.94 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=6.3
Q ss_pred hhhhhhHHHHHHh
Q 001169 457 NRKGKEKKREERS 469 (1133)
Q Consensus 457 ~rk~~e~~~ee~~ 469 (1133)
-+|.++.++.|++
T Consensus 222 ~~k~eee~aaERe 234 (561)
T KOG1103|consen 222 TKKGEEEAAAERE 234 (561)
T ss_pred cCCChHHHHHHHh
Confidence 3345555555544
No 217
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=35.32 E-value=2e+02 Score=31.34 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=15.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 001169 430 ESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGK 461 (1133)
Q Consensus 430 ~~e~~~kk~~k~keKk~~~k~ak~~e~~rk~~ 461 (1133)
+.|+++.+.+.+-++++.+.+|+.+..++..+
T Consensus 176 e~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~ 207 (242)
T cd03405 176 EGEEEAERIRADADRERTVILAEAYREAQEIR 207 (242)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555554433
No 218
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=35.04 E-value=4.6e+02 Score=26.56 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001169 404 EVAYQEAVALKRQEELIREEEAA 426 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~Ll~E~E~e 426 (1133)
..+|.....+..+++.|.+.|.|
T Consensus 30 ~tSwekr~~~R~~~~~~K~~ekE 52 (108)
T PF03879_consen 30 RTSWEKRMEKRLELKAIKEKEKE 52 (108)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 219
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=34.64 E-value=24 Score=38.71 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=29.3
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001169 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 213 ~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
+||+.|+|.|| +|+.+||...+...||.+++...
T Consensus 1 ~~GL~N~gntC---------Y~NsvLQ~L~~~~~~~~~~~~~~ 34 (304)
T cd02661 1 GAGLQNLGNTC---------FLNSVLQCLTHTPPLANYLLSRE 34 (304)
T ss_pred CCCccccCchh---------HHHHHHHHhhCCHHHHHHHhcch
Confidence 37889999999 99999999998888988776543
No 220
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=33.58 E-value=26 Score=46.54 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.4
Q ss_pred cccCCchhhhhhhhcccccccccccccc
Q 001169 973 VDEFPHLDIINDLLDDEHGVGMAAGAST 1000 (1133)
Q Consensus 973 ~dEFPHLDIINDLL~eeq~~g~~~~~~~ 1000 (1133)
.-|||||- --|||--|-+.|-|+..++
T Consensus 1931 s~~y~~~~-~~~l~h~e~~~g~~~~~~s 1957 (2131)
T KOG4369|consen 1931 SNLYNHLA-AQLLTHQESSTGAPGPTSS 1957 (2131)
T ss_pred cccchhHH-HHHHHhhhccCCCCCCCCC
Confidence 35889985 4688888888887777555
No 221
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.47 E-value=3.7e+02 Score=33.36 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001169 410 AVALKRQEELIREEEA 425 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~ 425 (1133)
.+|...|.++++-|+.
T Consensus 196 q~ak~eyNe~Vr~lv~ 211 (508)
T KOG0717|consen 196 QYARQEYNETVRNLVG 211 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666554
No 222
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=33.47 E-value=17 Score=46.75 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=39.1
Q ss_pred cchhhhhhhhhhhcchh---hhhhhHHHHHHhhcccc-------cccccc-------------cccccccccccCCCCCC
Q 001169 266 KTDAILKVVVKHFFIEK---EVTSTLVMDSLYSGLKA-------LEGQSK-------------SKKTKAKLLDAEDTPPP 322 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~k---eVtSplvmd~Lf~glk~-------le~~t~-------------~~k~~~~~~~t~e~p~~ 322 (1133)
..||+|.|++..|.+|| ++||+.|-+-|....+. +|+.+. -|.-++.+||||-+-.|
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P 637 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSP 637 (1267)
T ss_pred cceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCC
Confidence 38999999999999999 66999777755554444 222221 13445778899865444
No 223
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=33.32 E-value=1.5e+02 Score=37.98 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 401 NKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 401 ~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
.+|-++++|.=|+.+|++=|+++-+....+.|.++|.
T Consensus 416 kKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkd 452 (961)
T KOG4673|consen 416 KKVQALTKERDALRREQKSLKKELAAALLKDELAEKD 452 (961)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567889999999999998888887777666655554
No 224
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=33.17 E-value=1.8e+02 Score=33.46 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 408 QEAVALKRQEELIREEEAAWLAESE 432 (1133)
Q Consensus 408 ~E~~A~~rQ~~Ll~E~E~e~~~~~e 432 (1133)
.+........+||.|.+.-+..|+.
T Consensus 116 SD~HM~KVr~kLl~~~~~ie~~E~~ 140 (271)
T PF05890_consen 116 SDEHMEKVRQKLLKEQKRIEASEEA 140 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777776554444443
No 225
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=33.16 E-value=61 Score=30.58 Aligned_cols=14 Identities=14% Similarity=-0.044 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 001169 417 EELIREEEAAWLAE 430 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~ 430 (1133)
-+|..|+|.+|+++
T Consensus 42 wkLaK~ie~~ere~ 55 (74)
T PF15086_consen 42 WKLAKAIEKEEREK 55 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 36777777665543
No 226
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=33.12 E-value=31 Score=41.32 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=5.6
Q ss_pred HHHhhHHHHHhhh
Q 001169 229 ERRGKLGRLIEDK 241 (1133)
Q Consensus 229 d~~~hLG~LLqS~ 241 (1133)
+-++.|..-|.++
T Consensus 278 eyRk~L~~YL~~K 290 (498)
T KOG2573|consen 278 EYRKQLSDYLKDK 290 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 227
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.10 E-value=4.1e+02 Score=29.97 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=12.1
Q ss_pred HHHhhHHhhhHHHHHHHhhhh
Q 001169 379 ERRLTELGRRTVEIFVLAHIF 399 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F 399 (1133)
|+...||-+|+++|=--.+.-
T Consensus 4 Er~k~Ele~rL~q~eee~~~a 24 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRA 24 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777766533333
No 228
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=32.99 E-value=80 Score=39.11 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=13.5
Q ss_pred cccccCCCCcccCCCcccee
Q 001169 569 ASVMDDSSSTCSTDSVPSVV 588 (1133)
Q Consensus 569 ~s~~~~~sstcs~ds~~~~~ 588 (1133)
..+|.=-++-|.++...+||
T Consensus 189 ~~aiqr~a~~~~~e~~~~~v 208 (514)
T TIGR03319 189 ATAIQRYAGDHVAETTVSVV 208 (514)
T ss_pred HHHHHhccchhhhhheeeeE
Confidence 45566667777777776666
No 229
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=32.67 E-value=16 Score=40.26 Aligned_cols=89 Identities=18% Similarity=0.085 Sum_probs=52.6
Q ss_pred cchhhhhhh---hhhhcchhhh---hhhHHHHHHhh----ccccccccc-ccccccccccccCCCCCCceEeecceeeeh
Q 001169 266 KTDAILKVV---VKHFFIEKEV---TSTLVMDSLYS----GLKALEGQS-KSKKTKAKLLDAEDTPPPIVHVENDMFVLV 334 (1133)
Q Consensus 266 ~sDVilkV~---~k~Ffa~keV---tSplvmd~Lf~----glk~le~~t-~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~ 334 (1133)
.+|+.||++ .|+--+||=| |+-..-=+--+ ...++..+. .-+..++|.|||||+.-.+ .|.| .
T Consensus 66 fSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~----dD~~--L 139 (280)
T KOG4591|consen 66 FSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKE----DDEF--L 139 (280)
T ss_pred ccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccCHHHHHHhheeeecccccccc----chHH--H
Confidence 489999999 6888899965 44311101001 111222221 0155678999999975222 2222 3
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCcccccc
Q 001169 335 DDVLLLLERAALEPLPPKDEKGPQNRTKE 363 (1133)
Q Consensus 335 ~Dll~~leR~al~~Lp~~d~~~~q~~~~~ 363 (1133)
-.|+.++.|+.|+-|+. -|.+.+-.-
T Consensus 140 ~el~e~An~FqLe~Lke---~C~k~l~a~ 165 (280)
T KOG4591|consen 140 LELCELANRFQLELLKE---RCEKGLGAL 165 (280)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhH
Confidence 46778999999999976 466555443
No 230
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=32.51 E-value=1e+02 Score=33.97 Aligned_cols=8 Identities=0% Similarity=0.136 Sum_probs=3.3
Q ss_pred HHHhhHHh
Q 001169 379 ERRLTELG 386 (1133)
Q Consensus 379 e~~~~Elg 386 (1133)
+|+....+
T Consensus 109 ~~~k~~~~ 116 (197)
T PRK12585 109 SVKKDDIK 116 (197)
T ss_pred HHHhhhhh
Confidence 44443333
No 231
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=32.44 E-value=19 Score=40.87 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=27.8
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001169 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 215 PpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
|+.|+|.|| ||+.+||...+...||.+++...
T Consensus 1 GL~NlGnTC---------Y~NsvLQ~L~~~~~fr~~~l~~~ 32 (324)
T cd02668 1 GLKNLGATC---------YVNSFLQLWFMNLEFRKAVYECN 32 (324)
T ss_pred CcccCCcee---------HHHHHHHHHHCCHHHHHHHHccC
Confidence 567999999 99999999999889998876554
No 232
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=32.15 E-value=2.5e+02 Score=31.09 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=8.6
Q ss_pred ccCCeEEEEEEEEEe
Q 001169 178 KDGDTLIIKAQVQVI 192 (1133)
Q Consensus 178 LvDDsLTIeCdVtVI 192 (1133)
+..|...|.+++.|.
T Consensus 54 ~T~D~~~v~vd~~v~ 68 (261)
T TIGR01933 54 LTGDENIVNVEMNVQ 68 (261)
T ss_pred EeCCCCEEEEEEEEE
Confidence 445555666666554
No 233
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.13 E-value=16 Score=46.42 Aligned_cols=18 Identities=44% Similarity=0.427 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001169 440 AEKEKKAKKKLAKQKRNN 457 (1133)
Q Consensus 440 k~keKk~~~k~ak~~e~~ 457 (1133)
..|.|++.++.+||++.+
T Consensus 793 t~kakar~k~~~~ek~~~ 810 (929)
T KOG2062|consen 793 TAKAKARAKKEAKEKEPN 810 (929)
T ss_pred hhhhhhhhhhhhhhcccc
Confidence 455566666666665433
No 234
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=32.06 E-value=13 Score=42.97 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=28.7
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhh
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFW 251 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~ 251 (1133)
....||+.|+|.|| ||+++||...+...||..+
T Consensus 21 ~~~~~GL~NlGnTC---------YmNSvLQ~L~~~p~fr~~l 53 (332)
T cd02671 21 LLPFVGLNNLGNTC---------YLNSVLQVLYFCPGFKHGL 53 (332)
T ss_pred CCCCcceeccCceE---------eHHHHHHHHHcChHHHHHH
Confidence 36789999999999 9999999999877787654
No 235
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=32.00 E-value=1.3e+02 Score=31.55 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 396 AHIFSNKIEVAYQEAVALKRQEELIREEE 424 (1133)
Q Consensus 396 ~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E 424 (1133)
+.||= -=|--+++.+.|.+=++++.
T Consensus 26 gYiLl----RPY~~kl~~k~~~kq~eke~ 50 (140)
T PF07543_consen 26 GYILL----RPYFRKLAAKDQKKQLEKEK 50 (140)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 66663 23344555555554444443
No 236
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=31.90 E-value=55 Score=40.98 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001169 440 AEKEKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 440 k~keKk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
++||++.-++.||+||-.+||+|++...+
T Consensus 1030 ~~ke~~~s~~r~k~~~i~k~e~er~qr~r 1058 (1077)
T COG5192 1030 EEKERMESLQRAKEEEIGKKEKEREQRIR 1058 (1077)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56666666666677776666666554443
No 237
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.87 E-value=2.9e+02 Score=29.43 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=6.6
Q ss_pred hhhHHHHHHHhhhh
Q 001169 386 GRRTVEIFVLAHIF 399 (1133)
Q Consensus 386 grr~~~ifa~~k~F 399 (1133)
|--+|-.|++.+++
T Consensus 108 Gf~LfL~l~I~r~~ 121 (192)
T PF05529_consen 108 GFALFLSLVIRRVH 121 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 54555455544443
No 238
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.72 E-value=3.8e+02 Score=30.44 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.9
Q ss_pred ccccccccCC
Q 001169 598 LANYQNQKSP 607 (1133)
Q Consensus 598 ~~~~~~~~s~ 607 (1133)
|+-.++.+.|
T Consensus 220 F~~~~~~~~~ 229 (233)
T KOG4739|consen 220 FSPVRVHKLP 229 (233)
T ss_pred cchhhhcccc
Confidence 3333444433
No 239
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=31.69 E-value=43 Score=40.08 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=13.3
Q ss_pred cccCCcccccCCchhhhhhhh
Q 001169 966 RQTQGVLVDEFPHLDIINDLL 986 (1133)
Q Consensus 966 ~Q~qg~v~dEFPHLDIINDLL 986 (1133)
+|--|-+.+-|-|+-.--|.|
T Consensus 443 ~~~~G~~~htfshi~~ts~V~ 463 (555)
T KOG2457|consen 443 DLFKGQAKHTFSHICVTSDVL 463 (555)
T ss_pred hhcccchhhhhhhhhhHHHHH
Confidence 555666667777766665554
No 240
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=31.39 E-value=1.7e+02 Score=32.39 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=10.5
Q ss_pred CccCCeEEEEEEEEEee
Q 001169 177 FKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 177 FLvDDsLTIeCdVtVIk 193 (1133)
++..|...|.+++.|.-
T Consensus 80 v~T~D~~~v~vd~~v~y 96 (266)
T cd03404 80 MLTGDENIVDVEFAVQY 96 (266)
T ss_pred eEeCCCCEEEEEEEEEE
Confidence 34556667777776643
No 241
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=31.35 E-value=1.9e+02 Score=34.76 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=7.2
Q ss_pred cccCCCCCCCCCCC
Q 001169 603 NQKSPSRGKNQRGK 616 (1133)
Q Consensus 603 ~~~s~~rg~~~~~~ 616 (1133)
-|--|-.-||..+|
T Consensus 250 q~a~p~~kk~kk~k 263 (510)
T PF04747_consen 250 QQAAPQEKKNKKNK 263 (510)
T ss_pred hhcCcchhhccccc
Confidence 34445555565554
No 242
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=31.30 E-value=4.9e+02 Score=27.28 Aligned_cols=9 Identities=33% Similarity=0.124 Sum_probs=5.8
Q ss_pred HHHHhhhhh
Q 001169 392 IFVLAHIFS 400 (1133)
Q Consensus 392 ifa~~k~F~ 400 (1133)
=++||+.++
T Consensus 26 DgaLA~~LQ 34 (132)
T PF15295_consen 26 DGALAHRLQ 34 (132)
T ss_pred hHHHHHHHH
Confidence 346677776
No 243
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=31.28 E-value=1.8e+02 Score=36.04 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=4.4
Q ss_pred cCCCccc
Q 001169 594 KGNSLAN 600 (1133)
Q Consensus 594 ~~~~~~~ 600 (1133)
|||.|+.
T Consensus 429 ~g~v~~~ 435 (492)
T PF02029_consen 429 KGNVFSS 435 (492)
T ss_pred cCCcccC
Confidence 6676644
No 244
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=31.25 E-value=3.6e+02 Score=33.01 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHH-HH
Q 001169 383 TELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA---------AEKEKKAKKKL-AK 452 (1133)
Q Consensus 383 ~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~---------k~keKk~~~k~-ak 452 (1133)
.|.-.+--++++-..-.++|+..--.|- +.||++.|.|-|+=.-....-+++|.. ++.|-...+|+ ++
T Consensus 334 Lea~NKRhdlLaK~~e~Eekl~E~nee~--~~r~ee~~a~dea~~e~~~a~eAekqa~~eE~L~k~~eqEa~ienkq~~~ 411 (672)
T KOG4722|consen 334 LEADNKRHDLLAKDAEVEEKLLEKNEEF--LNRFEEFLAEDEAFFEIFEAFEAEKQAFFEEFLDKFFEQEACIENKQLAD 411 (672)
T ss_pred HHHhhhHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhHHHHHHhhhhhhhhhccc
Q 001169 453 QKRNNRKGKEKKREERSSMALSDRLEDE 480 (1133)
Q Consensus 453 ~~e~~rk~~e~~~ee~~~~~~~~~~~~~ 480 (1133)
|+.|.-+.+||+++..++.|+.-..+.|
T Consensus 412 EkARedaa~EkA~dkeEq~AA~TAaq~e 439 (672)
T KOG4722|consen 412 EKAREDAAEEKAADKEEQEAAATAAQAE 439 (672)
T ss_pred HHhhhhHHHHHhhhhHHHHHHHHHHHHH
No 245
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=31.21 E-value=24 Score=39.23 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.1
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCH
Q 001169 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQ 256 (1133)
Q Consensus 215 PpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~ 256 (1133)
|+.|+|.|| ||+.+||...+...||.+++....
T Consensus 1 Gl~N~GntC---------y~NsvLQ~L~~~~~f~~~~~~~~~ 33 (305)
T cd02657 1 GLTNLGNTC---------YLNSTLQCLRSVPELRDALKNYNP 33 (305)
T ss_pred Ccccccchh---------HHHHHHHHHhCCHHHHHHHHhccc
Confidence 467999999 999999999998889888766543
No 246
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=31.13 E-value=18 Score=40.33 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=25.5
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhc
Q 001169 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLG 253 (1133)
Q Consensus 215 PpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a 253 (1133)
|+.|+|.|| ||+.+||...+...||.+++.
T Consensus 1 GL~NlGNTC---------Y~NsvLQ~L~~~~~f~~~l~~ 30 (311)
T cd02658 1 GLRNLGNSC---------YLNSVLQVLFSIPSFQWRYDD 30 (311)
T ss_pred CcccCCcch---------HHHHHHHHHHCCHHHHHHHhh
Confidence 568999999 999999999988888876543
No 247
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=30.84 E-value=5.4e+02 Score=28.82 Aligned_cols=24 Identities=17% Similarity=0.251 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 401 NKIEVAYQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 401 ~ri~~Ay~E~~A~~rQ~~Ll~E~E~ 425 (1133)
+|-+..| |.++.+.|-+-|.+.+.
T Consensus 24 ~Rpeily-e~l~kL~pwq~latk~d 47 (231)
T COG5493 24 QRPEILY-EVLAKLTPWQQLATKQD 47 (231)
T ss_pred hChHHHH-HHHHhhchHHHHHHHHH
Confidence 5556555 45566655544433333
No 248
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=30.73 E-value=86 Score=38.75 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=9.5
Q ss_pred CCccC-CeEEEEEEE
Q 001169 176 GFKDG-DTLIIKAQV 189 (1133)
Q Consensus 176 GFLvD-DsLTIeCdV 189 (1133)
.||.. |+|.|+|--
T Consensus 289 ~~Le~~~~IFiRA~~ 303 (591)
T KOG2505|consen 289 KYLEKADLIFIRAPA 303 (591)
T ss_pred HHHccCCeEEEEccc
Confidence 46654 888888753
No 249
>PRK12704 phosphodiesterase; Provisional
Probab=30.61 E-value=4.7e+02 Score=32.74 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=11.5
Q ss_pred cccccCCCCcccCCCcccee
Q 001169 569 ASVMDDSSSTCSTDSVPSVV 588 (1133)
Q Consensus 569 ~s~~~~~sstcs~ds~~~~~ 588 (1133)
..+|.=-++-|.++...|||
T Consensus 195 ~~a~qr~a~~~~~e~~~~~v 214 (520)
T PRK12704 195 AQAIQRCAADHVAETTVSVV 214 (520)
T ss_pred HHHHHhhcchhhhhhceeee
Confidence 34555556666666655555
No 250
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=6.4e+02 Score=28.76 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=4.9
Q ss_pred cCCCCccCCCcc
Q 001169 553 VCNLSSVPNGVT 564 (1133)
Q Consensus 553 ~~~~~~~~n~~~ 564 (1133)
+.++-+..|.+.
T Consensus 207 L~gl~~a~s~vr 218 (246)
T KOG4657|consen 207 LQGLTSAISAVR 218 (246)
T ss_pred cccHHHHHHHhh
Confidence 344444444433
No 251
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=30.54 E-value=52 Score=41.66 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhh
Q 001169 441 EKEKKAKKKLAKQKRNNRKGKEKKREERSSMA 472 (1133)
Q Consensus 441 ~keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~ 472 (1133)
+.+||.++|+.|+++++.|+++++.++....+
T Consensus 584 ~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~ 615 (700)
T KOG1156|consen 584 DEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEA 615 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44677777788888877777777666554443
No 252
>KOG2484 consensus GTPase [General function prediction only]
Probab=30.53 E-value=44 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=10.1
Q ss_pred CCCcccCCCccceeeecCc
Q 001169 575 SSSTCSTDSVPSVVMYGPY 593 (1133)
Q Consensus 575 ~sstcs~ds~~~~~~~g~~ 593 (1133)
.+|.|.+-+.-+- +.|.|
T Consensus 226 ~~s~c~gae~l~~-~lgny 243 (435)
T KOG2484|consen 226 QSSVCFGAETLMK-VLGNY 243 (435)
T ss_pred ccchhhhHHHHHH-HhcCc
Confidence 4677776664422 45555
No 253
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.36 E-value=3.2e+02 Score=33.38 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=4.6
Q ss_pred CCCCCCCcC
Q 001169 528 RDTSPVNWD 536 (1133)
Q Consensus 528 r~~s~v~w~ 536 (1133)
+..-||+..
T Consensus 298 ~l~~PV~G~ 306 (420)
T COG4942 298 QLAWPVTGR 306 (420)
T ss_pred CcCCCCCCc
Confidence 445566554
No 254
>PRK12704 phosphodiesterase; Provisional
Probab=30.35 E-value=2.8e+02 Score=34.62 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=3.0
Q ss_pred ccceeeec
Q 001169 584 VPSVVMYG 591 (1133)
Q Consensus 584 ~~~~~~~g 591 (1133)
+|+-=|.|
T Consensus 216 lp~d~mkg 223 (520)
T PRK12704 216 LPNDEMKG 223 (520)
T ss_pred cCCchhhc
Confidence 34333433
No 255
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=30.24 E-value=6e+02 Score=25.86 Aligned_cols=17 Identities=0% Similarity=-0.005 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001169 401 NKIEVAYQEAVALKRQE 417 (1133)
Q Consensus 401 ~ri~~Ay~E~~A~~rQ~ 417 (1133)
+.....+.+.+....+.
T Consensus 70 ~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 70 QQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455556665444433
No 256
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.80 E-value=1.9e+02 Score=31.47 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=17.5
Q ss_pred HHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001169 379 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIRE 422 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E 422 (1133)
.-.|.|+|+...... +.....|++++.. +++||++
T Consensus 116 ~N~C~e~~~~~~~~~-------~~~~~~~~~G~~~--r~~~i~~ 150 (176)
T PF12999_consen 116 PNTCAELGKEYREEL-------EEEEEIYKEGLKI--RQELIEE 150 (176)
T ss_pred ccHHHHHHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHH
Confidence 456777775543332 2334556666532 3355543
No 257
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=29.67 E-value=58 Score=39.22 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=4.8
Q ss_pred ccEEEEEEcC
Q 001169 67 YGKYTWRIEK 76 (1133)
Q Consensus 67 tGshtWKIdN 76 (1133)
.|+..|++.+
T Consensus 11 ~GY~lf~~~~ 20 (498)
T KOG2573|consen 11 TGYGLFKVKE 20 (498)
T ss_pred CceeEEEEec
Confidence 3444555544
No 258
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=29.50 E-value=2.3e+02 Score=30.02 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001169 442 KEKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 442 keKk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
+||++-++++++-+++.|+.|+++|+.
T Consensus 80 ~~~~~~~~e~~~l~~~A~~~e~~~d~~ 106 (157)
T PF14235_consen 80 KEKARYKSEAEELEAKAKEAEAESDHA 106 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444555555555555555544
No 259
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=29.27 E-value=3.5e+02 Score=27.49 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001169 413 LKRQEELIREEEAAWL 428 (1133)
Q Consensus 413 ~~rQ~~Ll~E~E~e~~ 428 (1133)
.+.|+++|.|-.++.+
T Consensus 27 kEe~~~~i~eAr~ear 42 (108)
T COG2811 27 KEEAEQIIKEAREEAR 42 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455544444333
No 260
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.81 E-value=5.5e+02 Score=35.27 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=8.4
Q ss_pred HHhhHHhhhHHHHHHHhhhh
Q 001169 380 RRLTELGRRTVEIFVLAHIF 399 (1133)
Q Consensus 380 ~~~~Elgrr~~~ifa~~k~F 399 (1133)
.++-||+++..++=..++.-
T Consensus 1626 ~~~e~lk~~~~qns~~A~~a 1645 (1758)
T KOG0994|consen 1626 TRMEELKHKAAQNSAEAKQA 1645 (1758)
T ss_pred HHHHHHHHHHHhccHHHHHH
Confidence 33344444444444433333
No 261
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=28.68 E-value=41 Score=40.66 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=6.0
Q ss_pred CeEEEEEEEEEe
Q 001169 181 DTLIIKAQVQVI 192 (1133)
Q Consensus 181 DsLTIeCdVtVI 192 (1133)
--+.++-+|-|.
T Consensus 232 ePIlLk~hVLVM 243 (520)
T KOG2270|consen 232 EPILLKNHVLVM 243 (520)
T ss_pred CceeeecceEee
Confidence 345555555554
No 262
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=28.64 E-value=2.8e+02 Score=34.58 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=16.4
Q ss_pred cCCCCCCCCCcc-ccccCCCCCCCCccccC
Q 001169 494 AQPLPEKPDVLE-DVSDVSDSVDGGAEVLQ 522 (1133)
Q Consensus 494 ~~~~~~k~d~~e-~~sd~sd~~d~~~e~~~ 522 (1133)
+|..+.|.--+- -||-|.|-|.--+-.++
T Consensus 369 ~~k~~~k~~~~~~~vskid~rleqyt~a~~ 398 (492)
T PF02029_consen 369 IQKSSVKKSHPPAVVSKIDDRLEQYTSAIE 398 (492)
T ss_pred HhhcCCcccCCCcccccchhhHHHHHHHhh
Confidence 444444543333 57777777766665555
No 263
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=28.10 E-value=96 Score=39.04 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=7.2
Q ss_pred CCCCCccccCCCCCC
Q 001169 513 SVDGGAEVLQPDSED 527 (1133)
Q Consensus 513 ~~d~~~e~~~~d~ed 527 (1133)
.-||..|+-..+.||
T Consensus 733 ~~~g~k~~~~~~~eD 747 (758)
T KOG0343|consen 733 AADGIKEVSNSSVED 747 (758)
T ss_pred ccccccccCCcchhh
Confidence 345666663333343
No 264
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=27.84 E-value=5.5e+02 Score=30.97 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=18.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHhhhh
Q 001169 432 EQKAKRGAAEKEKKAKKKLAKQKRNN-RKGKEKKREERSSMA 472 (1133)
Q Consensus 432 e~~~kk~~k~keKk~~~k~ak~~e~~-rk~~e~~~ee~~~~~ 472 (1133)
+|..|=++.+|++--+++||..+.-+ ++++|.-+-|+..++
T Consensus 292 ~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~aka 333 (428)
T KOG2668|consen 292 ERETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKA 333 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhh
Confidence 34444444555555556655544332 234444444443333
No 265
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=3.8e+02 Score=29.60 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 001169 428 LAESEQKAKR 437 (1133)
Q Consensus 428 ~~~~e~~~kk 437 (1133)
++.+|+-+||
T Consensus 121 kaaEeKTaKK 130 (213)
T KOG4055|consen 121 KAAEEKTAKK 130 (213)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 266
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=27.52 E-value=6.7e+02 Score=28.73 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001169 417 EELIREEEAAWLAESEQKAKRGAAEKEKKAKK 448 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~~ 448 (1133)
+.+||-|..+.-.+.-.+.|-.+|+-||+..+
T Consensus 213 kAviEAEK~AqVa~I~~qqkl~EKetekr~~e 244 (322)
T KOG2962|consen 213 KAVIEAEKNAQVAKILMQQKLMEKETEKRISE 244 (322)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHH
Confidence 33443333333333333333334455554433
No 267
>PLN02850 aspartate-tRNA ligase
Probab=27.34 E-value=53 Score=40.79 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=12.7
Q ss_pred CCCC-CCCCCcccccccchh
Q 001169 889 RIDP-NSVQSAFPFSMVTRD 907 (1133)
Q Consensus 889 r~~~-~s~~~gf~~g~~~~e 907 (1133)
|++. ...+|=-.|-|.-.|
T Consensus 302 RaE~s~t~RHl~EFt~Le~E 321 (530)
T PLN02850 302 RAEDSFTHRHLCEFTGLDLE 321 (530)
T ss_pred ccCCCCCCccchhhccchhh
Confidence 7776 466776677766665
No 268
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.28 E-value=3.9e+02 Score=28.53 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.6
Q ss_pred HHHHHH
Q 001169 389 TVEIFV 394 (1133)
Q Consensus 389 ~~~ifa 394 (1133)
-|--|+
T Consensus 105 YIsGf~ 110 (192)
T PF05529_consen 105 YISGFA 110 (192)
T ss_pred HHHHHH
Confidence 344444
No 269
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.97 E-value=1.1e+02 Score=38.07 Aligned_cols=6 Identities=50% Similarity=1.303 Sum_probs=3.7
Q ss_pred eEEEEE
Q 001169 95 YKWYIL 100 (1133)
Q Consensus 95 hkWRI~ 100 (1133)
..|+++
T Consensus 56 v~wY~C 61 (586)
T KOG2007|consen 56 VTWYIC 61 (586)
T ss_pred EEEEEe
Confidence 567654
No 270
>PHA01750 hypothetical protein
Probab=26.75 E-value=2.5e+02 Score=26.34 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=22.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001169 391 EIFVLAHIFSNKIEVAYQEAVALKRQEEL 419 (1133)
Q Consensus 391 ~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~L 419 (1133)
-+|+...++- +|+.++++++-.-.|.+|
T Consensus 17 tlFaIiqlYl-KIKq~lkdAvkeIV~~EL 44 (75)
T PHA01750 17 TLFAIIQLYL-KIKQALKDAVKEIVNSEL 44 (75)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3677677774 899999999988888765
No 271
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=26.67 E-value=1.5e+02 Score=30.91 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=3.9
Q ss_pred hHHHHHHH
Q 001169 400 SNKIEVAY 407 (1133)
Q Consensus 400 ~~ri~~Ay 407 (1133)
++||.-||
T Consensus 86 r~rIirAF 93 (135)
T PTZ00074 86 RDRIVRAF 93 (135)
T ss_pred HHHHHHHH
Confidence 35555554
No 272
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=26.67 E-value=4.6e+02 Score=25.05 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=6.0
Q ss_pred hHHhhhHHHHHH
Q 001169 383 TELGRRTVEIFV 394 (1133)
Q Consensus 383 ~Elgrr~~~ifa 394 (1133)
.-+||...-++.
T Consensus 12 IkfGRysaL~lG 23 (81)
T KOG4326|consen 12 IKFGRYSALSLG 23 (81)
T ss_pred HHhhHHHHHHHH
Confidence 345665544444
No 273
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.41 E-value=53 Score=40.74 Aligned_cols=43 Identities=28% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 390 VEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQK 434 (1133)
Q Consensus 390 ~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~ 434 (1133)
|.|-++..-|.+ ++..-.|++ ..||.+|+-+.|+|+..++|++
T Consensus 568 lg~d~~~~~f~~-~le~~~e~~-~~rqr~l~~~~eaee~~~~e~~ 610 (633)
T KOG2385|consen 568 LGIDVLSEEFRQ-TLEVQEEKY-ESRQRTLYSQKEAEEEIEQEVL 610 (633)
T ss_pred hCccccCHHHHH-HhhcCChHH-HHHHHHHHhHHhHHHHHHHHHH
Confidence 666666666643 333444444 7889999999999888887776
No 274
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=26.39 E-value=1.3e+02 Score=32.05 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 001169 417 EELIREE 423 (1133)
Q Consensus 417 ~~Ll~E~ 423 (1133)
+++|+|-
T Consensus 20 ~~il~~A 26 (198)
T PRK03963 20 EYILEEA 26 (198)
T ss_pred HHHHHHH
Confidence 3344433
No 275
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=25.85 E-value=6.5e+02 Score=25.57 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 001169 440 AEKEKKAKKKLAKQ 453 (1133)
Q Consensus 440 k~keKk~~~k~ak~ 453 (1133)
+-|||+.......+
T Consensus 113 kL~ek~~~~~~~~e 126 (147)
T PRK05689 113 TLQERYQTEARLAE 126 (147)
T ss_pred HHHHHHHHHHHHHH
Confidence 44554444443333
No 276
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=25.72 E-value=65 Score=32.27 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=2.7
Q ss_pred HHHhhhh
Q 001169 453 QKRNNRK 459 (1133)
Q Consensus 453 ~~e~~rk 459 (1133)
|+|++||
T Consensus 93 E~E~~rk 99 (105)
T PF11214_consen 93 EEERKRK 99 (105)
T ss_pred HHHHHHH
Confidence 3333333
No 277
>PRK00106 hypothetical protein; Provisional
Probab=25.71 E-value=3.2e+02 Score=34.35 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=10.4
Q ss_pred CCCCCC-CcccCCCcccccccCCCCC
Q 001169 610 GKNQRG-KSTYDGNVWATETENQPSR 634 (1133)
Q Consensus 610 g~~~~~-~~~~~~~~~~~~~~~~ps~ 634 (1133)
||.-|| |....-|+..--.|+-|..
T Consensus 242 GreGrNir~~E~~tGvdliiddtp~~ 267 (535)
T PRK00106 242 GREGRNIRTLESLTGIDVIIDDTPEV 267 (535)
T ss_pred CCCcchHHHHHHHhCceEEEcCCCCe
Confidence 444444 3333333333335555543
No 278
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.57 E-value=1.3e+02 Score=37.63 Aligned_cols=7 Identities=0% Similarity=0.392 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 001169 405 VAYQEAV 411 (1133)
Q Consensus 405 ~Ay~E~~ 411 (1133)
..|+.++
T Consensus 563 ek~~~~i 569 (691)
T KOG0338|consen 563 EKFRKKI 569 (691)
T ss_pred HHHHHHH
Confidence 3344333
No 279
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=25.53 E-value=1.8e+02 Score=29.52 Aligned_cols=37 Identities=41% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHH
Q 001169 417 EELIREEEAAWLAESEQKAKRG--AAEKEKKAKKKLAKQ 453 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~e~~~kk~--~k~keKk~~~k~ak~ 453 (1133)
++++.++++.-+++.++++.|- |..+|=||+++-|.+
T Consensus 17 ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~ 55 (109)
T PHA02571 17 EELLSELQARNEAEAEKKAAKILKKNRREIKRLKKHAEE 55 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 280
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=25.44 E-value=30 Score=38.42 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=26.7
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhc
Q 001169 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLG 253 (1133)
Q Consensus 215 PpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a 253 (1133)
|+.|+|.|| ||+..||...+...||.+++.
T Consensus 1 Gl~N~GntC---------y~NsvLQ~L~~~~~~~~~~l~ 30 (279)
T cd02667 1 GLSNLGNTC---------FFNAVMQNLSQTPALRELLSE 30 (279)
T ss_pred CCcCCCCch---------HHHHHHHHHhcCHHHHHHHHH
Confidence 467999999 999999999998889887766
No 281
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.15 E-value=61 Score=35.71 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhcc
Q 001169 442 KEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 479 (1133)
Q Consensus 442 keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~~~ 479 (1133)
++=++.||.+||=.++.+|+.|+.++++-+..++++.|
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qme 109 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 282
>PF03538 VRP1: Salmonella virulence plasmid 28.1kDa A protein; InterPro: IPR018003 This entry included insecticidal toxin complex proteins (TcaA, TccA, TcbA, TcdA) from Photorhabdus luminescens subsp. laumondii and Xenorhabdus nematophilus (Achromobacter nematophilus) [], and virulence proteins from Salmonella typhimurium that are encoded on a 90kb plasmid. P. luminescens and X. nematophilus are Gram-negative bacteria that form entomopathogenic symbioses with soil nematodes. The bacteria are found in the gut of entomopathogenic nematodes that invade and kill insects. When the nematode invades an insect host the bacteria are released into the insect haemocoel (the open circulatory system), both the bacteria and the nematode undergo multiple rounds of replication which kills the insect host. Mapping of the insecticidal toxin loci and studies on knockout mutants in P. luminescens showed that deletion of either tca or tcd loci dramatically reduced toxicity, while the double mutant tca/tcd abolished toxicity []. However the biology of toxin action is unclear as is the species range of insects the toxins are active against. S. typhimurium contains a 90kb plasmid that is associated with virulence. This plasmid encodes at least 6 genes needed by the bacterium for invading host macrophages during infection. These include the 70kDa mkaA protein [], a recognised virulence factor, and more recently described, four spv genes under the control of a regulator []. Deletion studies on the virulence plasmid have shown that an open reading frame encoding a 28kDa protein was needed for successful invasion of the host. This protein, designated mkfA [], VRP4 [] or VirA [] by different groups, is utilised by the microbe upon entry into macrophages, although the exact mechanism is unclear.
Probab=25.09 E-value=26 Score=40.91 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=32.1
Q ss_pred cccccCCchhhhhhhhccc--cc---ccccccccccccccCCCCccccccccCCC
Q 001169 971 VLVDEFPHLDIINDLLDDE--HG---VGMAAGASTVLQSLSNGPHTLNRQFSFPR 1020 (1133)
Q Consensus 971 ~v~dEFPHLDIINDLL~ee--q~---~g~~~~~~~~~~~~~~~~~~f~~~fs~~g 1020 (1133)
-|-.|-|.|||+|++|+.- .- .|.. .-.+.+.|..-+..|.+||.+|-
T Consensus 171 n~~~~vp~L~ivNevL~~~i~~~~~~~~~~--~~~v~~~La~~~~p~~LPY~~~~ 223 (325)
T PF03538_consen 171 NMNTEVPTLDIVNEVLESAIKAYLDQTGDT--RKSVYQALATARYPFTLPYHDPH 223 (325)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHhcccCCcc--hhHHHHHHHhccCCCCCCCccHH
Confidence 4677889999999999741 00 1211 11456667666777888887765
No 283
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=25.03 E-value=2.9e+02 Score=28.03 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001169 443 EKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 443 eKk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
.|-++-||||++-.+.-++=++..|+
T Consensus 28 ~r~~RLKqAK~EA~~EI~~yr~~kE~ 53 (113)
T TIGR01147 28 RKTKRLKQAKEEAQKEVEKYKQQREK 53 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556665555444443333333
No 284
>PTZ00491 major vault protein; Provisional
Probab=24.95 E-value=2.7e+02 Score=36.73 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=37.4
Q ss_pred cccchhHH-HHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001169 370 FNKDSIER-DERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAK 447 (1133)
Q Consensus 370 vs~dtve~-ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~ 447 (1133)
|++-+||+ |.+-+. .=.|-+++.+ +...+--.|.-+|+....|-|+..++|.+|-.-+.+.|+.+|.+
T Consensus 633 VDvqsvEpvD~~tr~-~LqkSVqlAi---------EItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~l 701 (850)
T PTZ00491 633 VDVQSVEPVDERTRD-SLQKSVQLAI---------EITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKL 701 (850)
T ss_pred EeeeeeeecCHHHHH-HHHHHHHHhh---------hhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHH
Confidence 55666776 554432 2334445444 44445555566666666677777666666555455444444433
No 285
>KOG4043 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=48 Score=35.46 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=8.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHh
Q 001169 435 AKRGAAEKEKKAKKKLAKQKRN 456 (1133)
Q Consensus 435 ~kk~~k~keKk~~~k~ak~~e~ 456 (1133)
.||.++.||+|+++++.+..|+
T Consensus 178 ~KkhedDKeRKK~KeEk~~~eK 199 (214)
T KOG4043|consen 178 HKKHEDDKERKKEKEEKGDAEK 199 (214)
T ss_pred hhhhhhhHHHHHHHHHhhhhhh
Confidence 3333344444444333333333
No 286
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.57 E-value=5.4e+02 Score=30.85 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001169 402 KIEVAYQEAVALKRQE---ELIREEEAAWLAESEQKAKRGAAEKEKKAKKK 449 (1133)
Q Consensus 402 ri~~Ay~E~~A~~rQ~---~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~~k 449 (1133)
-|..|+.|++-..+++ +|..|.|.=+|.++|-+.=+++=+.++.++++
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEq 260 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQ 260 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Confidence 3455666666544444 34444555455555554444443333333333
No 287
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.48 E-value=87 Score=38.87 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHH
Q 001169 444 KKAKKKLAKQKRNNRKGKEKK 464 (1133)
Q Consensus 444 Kk~~~k~ak~~e~~rk~~e~~ 464 (1133)
||.++|+.|+++|+++++++.
T Consensus 413 Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 413 KKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 444555555555444444433
No 288
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=24.39 E-value=1.7e+02 Score=31.68 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001169 415 RQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 415 rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
||..+..|-|+.+++++|.
T Consensus 33 RlAReQkErEE~ER~ekEE 51 (171)
T PF05672_consen 33 RLAREQKEREEQERLEKEE 51 (171)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5667777777777665543
No 289
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=24.39 E-value=1.9e+02 Score=32.86 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.7
Q ss_pred ccccccccCC
Q 001169 309 TKAKLLDAED 318 (1133)
Q Consensus 309 ~~~~~~~t~e 318 (1133)
++|-..|+|.
T Consensus 43 ~kL~iYDaDG 52 (243)
T PF05279_consen 43 GKLGIYDADG 52 (243)
T ss_pred hhheeeeccC
Confidence 4454445443
No 290
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=24.33 E-value=42 Score=44.01 Aligned_cols=7 Identities=29% Similarity=0.245 Sum_probs=4.4
Q ss_pred cCCCCCC
Q 001169 824 LGPDLAP 830 (1133)
Q Consensus 824 ~g~dpS~ 830 (1133)
|+|||=.
T Consensus 828 l~~dp~~ 834 (982)
T PF03154_consen 828 LANDPLA 834 (982)
T ss_pred hcCCchH
Confidence 4777654
No 291
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=24.21 E-value=1.6e+02 Score=36.10 Aligned_cols=7 Identities=29% Similarity=0.581 Sum_probs=3.1
Q ss_pred ccccCCC
Q 001169 518 AEVLQPD 524 (1133)
Q Consensus 518 ~e~~~~d 524 (1133)
.|.+++|
T Consensus 356 v~~i~LD 362 (586)
T KOG2223|consen 356 VELIKLD 362 (586)
T ss_pred hhheeec
Confidence 3444444
No 292
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=24.19 E-value=9.7e+02 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred HHHHhhHHhhhHHHHHHH-hhhhhHHHHHHHHH
Q 001169 378 DERRLTELGRRTVEIFVL-AHIFSNKIEVAYQE 409 (1133)
Q Consensus 378 ee~~~~Elgrr~~~ifa~-~k~F~~ri~~Ay~E 409 (1133)
|+-+..|+..++-++-+. +.+=-+|+.+.+.|
T Consensus 61 E~TkQ~E~~ak~~e~ea~~~q~~~e~~rv~~EE 93 (276)
T PF12037_consen 61 EETKQAELQAKIAEYEAAQAQAEIERQRVEAEE 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666655442 22222444444444
No 293
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.10 E-value=9.5e+02 Score=26.12 Aligned_cols=19 Identities=37% Similarity=0.343 Sum_probs=8.5
Q ss_pred HHHHhhhhhHHHHHHHHHH
Q 001169 392 IFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 392 ifa~~k~F~~ri~~Ay~E~ 410 (1133)
+|+..+++..++..|-.++
T Consensus 18 ~~~~~~~~~~~~~~A~~~A 36 (201)
T PF12072_consen 18 YLVRKKINRKKLEQAEKEA 36 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3343444444554444443
No 294
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=24.02 E-value=61 Score=40.49 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=10.8
Q ss_pred CCCCCC-CCCcccccccchh
Q 001169 889 RIDPNS-VQSAFPFSMVTRD 907 (1133)
Q Consensus 889 r~~~~s-~~~gf~~g~~~~e 907 (1133)
|++... .+|=-.|-|.-.|
T Consensus 290 RaE~s~T~RHl~EFt~Le~E 309 (550)
T PTZ00401 290 RSENSNTHRHLTEFVGLDVE 309 (550)
T ss_pred eCCCCCCCCCccchhhhhhh
Confidence 666553 4666566555554
No 295
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.00 E-value=6e+02 Score=31.75 Aligned_cols=6 Identities=17% Similarity=0.673 Sum_probs=2.8
Q ss_pred ccCCCC
Q 001169 628 TENQPS 633 (1133)
Q Consensus 628 ~~~~ps 633 (1133)
.|+-|.
T Consensus 240 iddtp~ 245 (514)
T TIGR03319 240 IDDTPE 245 (514)
T ss_pred EcCCCC
Confidence 455443
No 296
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=23.93 E-value=23 Score=37.15 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.3
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 213 ~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
+||+.|+|.|| ||+..||...+...||.++...
T Consensus 1 ~~Gl~N~gntC---------ylNs~lQ~L~~~~~~~~~l~~~ 33 (269)
T PF00443_consen 1 PVGLQNIGNTC---------YLNSVLQCLFHIPPFRNYLLSY 33 (269)
T ss_dssp --EESBSSSTH---------HHHHHHHHHHTSHHHHHHHHTT
T ss_pred CCCcEeCCCch---------HHhHHHHhhhhhhhhhhhhhhc
Confidence 46889999999 9999999998877787765543
No 297
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=23.85 E-value=3.8e+02 Score=28.55 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=12.8
Q ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001169 384 ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQE 417 (1133)
Q Consensus 384 Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~ 417 (1133)
++.++||+-|= .-+=+++|..-++-|+
T Consensus 75 ~kRr~mme~~E-------~~EW~~RE~eI~~lQe 101 (154)
T PF14738_consen 75 EKRRKMMEEME-------WKEWAFREEEIQELQE 101 (154)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 45566665543 2244455554444443
No 298
>PTZ00491 major vault protein; Provisional
Probab=23.66 E-value=1.3e+03 Score=30.85 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=19.0
Q ss_pred hhhHHHhhHHHHHhhhccccccchhh
Q 001169 226 FVEERRGKLGRLIEDKARWSSFCAFW 251 (1133)
Q Consensus 226 fved~~~hLG~LLqS~~~~ssFRaf~ 251 (1133)
||.+.|++|++.+.....-..|-.|-
T Consensus 571 FvGd~Ck~iaSrIR~aVA~~~Fd~FH 596 (850)
T PTZ00491 571 FVGDACKTIASRVRAAVASEPFDEFH 596 (850)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHh
Confidence 78899999999887665555565553
No 299
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=23.66 E-value=7.3e+02 Score=26.64 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=24.2
Q ss_pred HHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 393 FVLAHIF----SNKIEVAYQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 393 fa~~k~F----~~ri~~Ay~E~~A~~rQ~~Ll~E~E~ 425 (1133)
.-+.++| +.-|+.||.++.-...+..+++|.|.
T Consensus 65 ~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 65 AEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3348888 67899999998766666666666654
No 300
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=23.60 E-value=4e+02 Score=29.47 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.2
Q ss_pred hhhhhHHHHHHHHH
Q 001169 396 AHIFSNKIEVAYQE 409 (1133)
Q Consensus 396 ~k~F~~ri~~Ay~E 409 (1133)
.+|.++.+..|=.|
T Consensus 15 dki~~eiL~eA~~e 28 (207)
T PRK01005 15 DALREETLKPAEEE 28 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 301
>PLN02381 valyl-tRNA synthetase
Probab=23.54 E-value=91 Score=41.92 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhcccCCchhhhhhh
Q 001169 429 AESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLEDENPSDEKKEFI 490 (1133)
Q Consensus 429 ~~~e~~~kk~~k~keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~~~~~~~~~~~~~~ 490 (1133)
++-|||.||.+|.|||..++-.|.+++.+.|.+.+.+. ...+...|..+.+++.+-++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (1066)
T PLN02381 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQAS--DGTNVPKKSEKKSRKRDVEDEN 75 (1066)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcccchhhhhhhhhhhcc
No 302
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=23.51 E-value=2.2e+02 Score=29.75 Aligned_cols=6 Identities=33% Similarity=0.734 Sum_probs=2.4
Q ss_pred ccCCCC
Q 001169 315 DAEDTP 320 (1133)
Q Consensus 315 ~t~e~p 320 (1133)
|...||
T Consensus 7 d~~~lP 12 (132)
T PF15295_consen 7 DQSNLP 12 (132)
T ss_pred ccccCC
Confidence 333444
No 303
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=23.32 E-value=28 Score=41.68 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=6.2
Q ss_pred hhhhhhhcchh
Q 001169 272 KVVVKHFFIEK 282 (1133)
Q Consensus 272 kV~~k~Ffa~k 282 (1133)
..+|-+|-+|.
T Consensus 290 ElVGaRlIsha 300 (498)
T KOG2572|consen 290 ELVGARLISHA 300 (498)
T ss_pred HHHHHHHHHhh
Confidence 34456666665
No 304
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.30 E-value=93 Score=37.52 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCCCCCCCccc--cccCCCCC
Q 001169 496 PLPEKPDVLED--VSDVSDSV 514 (1133)
Q Consensus 496 ~~~~k~d~~e~--~sd~sd~~ 514 (1133)
++--|.-++|| +-|++|-+
T Consensus 524 k~kkk~~~leegF~~D~~DpR 544 (622)
T COG5638 524 KLKKKASNLEEGFVFDPKDPR 544 (622)
T ss_pred hhhhhhhccccccccCCCCcc
Confidence 45567889998 78888765
No 305
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=23.25 E-value=4.6e+02 Score=30.01 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=29.0
Q ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001169 382 LTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 382 ~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
+-+++=|.+.+--|..++ .+++++-++-=+ .||.+|.-.+-++=||+.|-
T Consensus 163 ~~~e~L~~LS~seL~~ll-~e~E~~Ir~ySE-----eLV~qLA~RDELefEKEvKN 212 (244)
T PF07763_consen 163 SYEEGLRQLSLSELNELL-EEMETAIREYSE-----ELVQQLALRDELEFEKEVKN 212 (244)
T ss_pred CcHHHHHhcCHHHHHHHH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666 466666555543 45555555555555555554
No 306
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.13 E-value=3.1e+02 Score=35.60 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=40.8
Q ss_pred CCcCCCCCCCCCCC--CCC---CC--Cccceeeccc-hhhhhhc-cccccCCCCCCCCCCCCCccccc
Q 001169 784 PNMSRPSSAPLVPG--PRP---TA--PVVSVVHTAP-LLARSVS-AAGRLGPDLAPATHGYIPQSYRN 842 (1133)
Q Consensus 784 ~~~sRPsSAP~~p~--pr~---t~--p~~s~vqt~p-lLsRS~s-a~gr~g~dpS~~~~sy~pqsYrN 842 (1133)
+.-.|++|+|+-|. |.+ |. |++.+-|+++ +-+|.+= -.+|..|-+++-+|.|+-+.-||
T Consensus 498 t~~~rtssspvmpv~lp~~s~~ty~~~~v~a~~~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~ 565 (825)
T KOG0267|consen 498 TVPERTSSSPVMPVILPQASMSTYPEPPVGASSTARTSSARILPVTFNQANNISSEEAPVTLRRQRRN 565 (825)
T ss_pred ccccccccCCccccccCCCcccccCCCCccccCcccccccccccccccccccccCcCCccccccccCC
Confidence 35679999998776 222 22 3455556644 4456666 36788888888899999888887
No 307
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=23.03 E-value=2.7e+02 Score=37.51 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=12.0
Q ss_pred cccccCCchhhhhhhhc
Q 001169 971 VLVDEFPHLDIINDLLD 987 (1133)
Q Consensus 971 ~v~dEFPHLDIINDLL~ 987 (1133)
+||+-|-.|+..|++..
T Consensus 1279 ~vg~lf~~ls~v~sv~~ 1295 (1330)
T KOG0949|consen 1279 GVGELFKSLSVVNSVVL 1295 (1330)
T ss_pred ccchhhhhhhcchHHHH
Confidence 67777777777777543
No 308
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=22.95 E-value=3.6e+02 Score=27.36 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 399 FSNKIEVAYQEAVALKRQEELIREEEAAW 427 (1133)
Q Consensus 399 F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~ 427 (1133)
|+.|.+.--........+.+|-+|-|++.
T Consensus 33 wekr~~~R~~~~~~K~~ekElKeEKe~er 61 (108)
T PF03879_consen 33 WEKRMEKRLELKAIKEKEKELKEEKEAER 61 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433334433444444444444433
No 309
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=22.90 E-value=1.1e+03 Score=26.37 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=9.9
Q ss_pred ehhhHHHHH-HHhhcC
Q 001169 333 LVDDVLLLL-ERAALE 347 (1133)
Q Consensus 333 l~~Dll~~l-eR~al~ 347 (1133)
++.||+..+ ||+.++
T Consensus 20 ~ckel~~f~kERa~IE 35 (239)
T cd07658 20 FCKELATVLQERAELE 35 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 567777655 777666
No 310
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=22.69 E-value=5e+02 Score=30.66 Aligned_cols=13 Identities=15% Similarity=-0.035 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 001169 417 EELIREEEAAWLA 429 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~ 429 (1133)
++.|++.-.|+.+
T Consensus 139 ~e~I~k~KaE~~R 151 (357)
T PTZ00436 139 MEHIHKVKNEKKK 151 (357)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 311
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.45 E-value=2.7e+02 Score=27.76 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=14.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 396 AHIFSNKIEVAYQEAVALKRQEELIREE 423 (1133)
Q Consensus 396 ~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~ 423 (1133)
...| .+-+.|-.|-|+.+.|.+-|+.|
T Consensus 51 g~~f-~krE~A~E~~Y~r~~EkEqL~~L 77 (100)
T PF04568_consen 51 GGAF-GKREAAQEEQYFRKKEKEQLKKL 77 (100)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-chHHHhhHHHHHHHHHHHHHHHH
Confidence 4555 34566666666555555555444
No 312
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=22.42 E-value=8.3e+02 Score=24.85 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=8.5
Q ss_pred HHHHhhhHHHHHHHHHHHHH
Q 001169 433 QKAKRGAAEKEKKAKKKLAK 452 (1133)
Q Consensus 433 ~~~kk~~k~keKk~~~k~ak 452 (1133)
++.|.-.|-|||+...-...
T Consensus 106 ~~~k~~ekLker~~~~~~~~ 125 (146)
T PRK07720 106 IEVKKYEKMKEKKQEMFALE 125 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333345555544443333
No 313
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=22.39 E-value=2.8e+02 Score=30.40 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=5.1
Q ss_pred hHHHHHHHhhc
Q 001169 336 DVLLLLERAAL 346 (1133)
Q Consensus 336 Dll~~leR~al 346 (1133)
.|...|.+++-
T Consensus 49 ~l~~~~~~i~~ 59 (212)
T cd08045 49 PLAKKIRKIAK 59 (212)
T ss_pred HHHHHHHHHHH
Confidence 34445555443
No 314
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=22.35 E-value=8.3e+02 Score=24.79 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhh
Q 001169 402 KIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSS 470 (1133)
Q Consensus 402 ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~~~k~ak~~e~~rk~~e~~~ee~~~ 470 (1133)
.+...+.+++....+.--.-+.+-+...+.=.++.+..|.=||=+.++.++......|.+.|.-+|-+.
T Consensus 71 ~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~r~EQk~~DE~a~ 139 (147)
T PRK05689 71 QFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAENKREQKQMDEFAQ 139 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444555443333322223333333333334444445555555555555555555566666666443
No 315
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.23 E-value=2.8e+02 Score=30.79 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=5.9
Q ss_pred CCCCCCccccCCCC
Q 001169 512 DSVDGGAEVLQPDS 525 (1133)
Q Consensus 512 d~~d~~~e~~~~d~ 525 (1133)
|.--+.+-+|.++.
T Consensus 121 ~~esS~~p~l~te~ 134 (217)
T KOG4709|consen 121 DLESSGAPLLGTEP 134 (217)
T ss_pred cccccccccccccC
Confidence 43334444554433
No 316
>PLN03188 kinesin-12 family protein; Provisional
Probab=21.87 E-value=7.7e+02 Score=34.27 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=21.3
Q ss_pred HHHHhhHHhhhHHHHHHH--hhhhhHHHHHHHHHHHH
Q 001169 378 DERRLTELGRRTVEIFVL--AHIFSNKIEVAYQEAVA 412 (1133)
Q Consensus 378 ee~~~~Elgrr~~~ifa~--~k~F~~ri~~Ay~E~~A 412 (1133)
-|+.|.|+=.-.++..++ ++|+++ -+-++|++.
T Consensus 1090 ~eK~c~eel~~a~q~am~ghar~~e~--ya~l~ek~~ 1124 (1320)
T PLN03188 1090 TEKRCAEELKEAMQMAMEGHARMLEQ--YADLEEKHI 1124 (1320)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 578888888888887776 455553 222445543
No 317
>PRK04654 sec-independent translocase; Provisional
Probab=21.84 E-value=5.7e+02 Score=28.76 Aligned_cols=38 Identities=26% Similarity=0.103 Sum_probs=22.5
Q ss_pred HHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 380 RRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLA 429 (1133)
Q Consensus 380 ~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 429 (1133)
++|++++|.+-.++. +++ ..+...+++|.+|++.++.+
T Consensus 23 erLPe~aRtlGk~ir-------k~R-----~~~~~vk~El~~El~~~ELr 60 (214)
T PRK04654 23 ERLPKAARFAGLWVR-------RAR-----MQWDSVKQELERELEAEELK 60 (214)
T ss_pred hHHHHHHHHHHHHHH-------HHH-----HHHHHHHHHHHHhhhHHHHH
Confidence 466777777655544 222 12456677777777765543
No 318
>PLN03237 DNA topoisomerase 2; Provisional
Probab=21.80 E-value=1.9e+02 Score=40.22 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=13.7
Q ss_pred hhHHHHHHHhhcCCCCC
Q 001169 335 DDVLLLLERAALEPLPP 351 (1133)
Q Consensus 335 ~Dll~~leR~al~~Lp~ 351 (1133)
.+|+..|+....++.|.
T Consensus 1060 ~~l~~~L~~~gf~~~~~ 1076 (1465)
T PLN03237 1060 ADLVEELRQKGFTPFPK 1076 (1465)
T ss_pred HHHHHHHHHcCCCccch
Confidence 48888999988888764
No 319
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=21.73 E-value=1.1e+03 Score=25.89 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001169 415 RQEELIREEE 424 (1133)
Q Consensus 415 rQ~~Ll~E~E 424 (1133)
.|..-|+++|
T Consensus 114 ~qL~~l~~~e 123 (212)
T cd08045 114 KQLRFLEQLE 123 (212)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 320
>PF08701 GN3L_Grn1: GNL3L/Grn1 putative GTPase; InterPro: IPR014813 Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA []. This family contains a potential nuclear localisation signal.
Probab=21.60 E-value=2e+02 Score=27.54 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001169 417 EELIREEEAAWLAES 431 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~ 431 (1133)
++||.|.|+..+..+
T Consensus 45 e~iL~eie~~k~~~e 59 (79)
T PF08701_consen 45 EEILKEIEEKKERAE 59 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777766544433
No 321
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=21.60 E-value=7.9e+02 Score=24.30 Aligned_cols=12 Identities=0% Similarity=0.061 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 001169 402 KIEVAYQEAVAL 413 (1133)
Q Consensus 402 ri~~Ay~E~~A~ 413 (1133)
+......+.+..
T Consensus 68 ~f~~~l~~~i~~ 79 (141)
T TIGR02473 68 RFIRQLDQRIQQ 79 (141)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 322
>PRK06991 ferredoxin; Provisional
Probab=21.46 E-value=3.4e+02 Score=31.19 Aligned_cols=6 Identities=33% Similarity=0.744 Sum_probs=2.3
Q ss_pred hHHHHH
Q 001169 233 KLGRLI 238 (1133)
Q Consensus 233 hLG~LL 238 (1133)
.|..||
T Consensus 55 ~la~ll 60 (270)
T PRK06991 55 RLAALL 60 (270)
T ss_pred HHHHHh
Confidence 333333
No 323
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.41 E-value=1e+03 Score=28.91 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=7.5
Q ss_pred cccCCCCCCCCc
Q 001169 507 VSDVSDSVDGGA 518 (1133)
Q Consensus 507 ~sd~sd~~d~~~ 518 (1133)
-+-+.+..||-+
T Consensus 263 ~~~~~~~~D~~s 274 (390)
T KOG0551|consen 263 PHGLRLSLDGQS 274 (390)
T ss_pred ccccccccCCcc
Confidence 466667777743
No 324
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.27 E-value=8.2e+02 Score=30.49 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=4.0
Q ss_pred HhhHHHHHh
Q 001169 231 RGKLGRLIE 239 (1133)
Q Consensus 231 ~~hLG~LLq 239 (1133)
..++..++.
T Consensus 119 ~~~~e~~~~ 127 (582)
T PF09731_consen 119 EEALEEAAK 127 (582)
T ss_pred hhhhhhhhh
Confidence 334544443
No 325
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.26 E-value=1.1e+02 Score=30.50 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=7.1
Q ss_pred cccCCCCCCCCCcc
Q 001169 492 EDAQPLPEKPDVLE 505 (1133)
Q Consensus 492 ~~~~~~~~k~d~~e 505 (1133)
+-++.++-|+|-||
T Consensus 103 ksvgklahkvdlle 116 (121)
T PF10669_consen 103 KSVGKLAHKVDLLE 116 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 326
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=20.77 E-value=1.9e+02 Score=36.10 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHh
Q 001169 440 AEKEKKAKKKLAKQKRNNRKGKEKKREERS 469 (1133)
Q Consensus 440 k~keKk~~~k~ak~~e~~rk~~e~~~ee~~ 469 (1133)
+.|+|+.=+|..-.+.++++++++.++.+.
T Consensus 535 s~k~~~ly~k~~~~~~rk~~e~~~l~~kkk 564 (570)
T KOG2481|consen 535 SKKERKLYQKMKFSKSRKEQEALKLKKKKK 564 (570)
T ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 777777777776666666666666655443
No 327
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.48 E-value=2.2e+02 Score=36.47 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.4
Q ss_pred eeeehhhHHHHHHHhhcCC
Q 001169 330 MFVLVDDVLLLLERAALEP 348 (1133)
Q Consensus 330 ~~~l~~Dll~~leR~al~~ 348 (1133)
.|.+.++++.++-|--+++
T Consensus 318 HFN~~~kiv~l~vr~in~~ 336 (704)
T KOG2153|consen 318 HFNLRQKIVKLVVRLINDP 336 (704)
T ss_pred hccHHHHHHHHHHHhhcCC
Confidence 4777888888888776666
No 328
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=20.40 E-value=84 Score=41.01 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001169 415 RQEELIREEEAAWLAESEQKAKRGAAEKE 443 (1133)
Q Consensus 415 rQ~~Ll~E~E~e~~~~~e~~~kk~~k~ke 443 (1133)
.+.++|++.-++.+....|+.++.-|+||
T Consensus 33 ~n~~~l~~~~~~~~~~~Kr~l~~~~k~~e 61 (1172)
T KOG0926|consen 33 MNAKILENNNEESKKSRKRKLNSLVKEKE 61 (1172)
T ss_pred cchhhcccCchhhhhhhhHHHHhhccHhh
Confidence 34555555555554444444443335555
No 329
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.37 E-value=6.9e+02 Score=33.68 Aligned_cols=29 Identities=28% Similarity=0.165 Sum_probs=24.0
Q ss_pred hhhhhccccccCCCCCCCCCCCCCccccc
Q 001169 814 LARSVSAAGRLGPDLAPATHGYIPQSYRN 842 (1133)
Q Consensus 814 LsRS~sa~gr~g~dpS~~~~sy~pqsYrN 842 (1133)
..+..+++.|+|+.+-.++|-+.||+--+
T Consensus 1015 ~~~~a~~a~~~~~~~~~~~P~~~~~s~~~ 1043 (1080)
T KOG0566|consen 1015 MPSPASAATLSGPWYVISKPLAPPQSNNG 1043 (1080)
T ss_pred CCCccchhccCCCcccccCCccchhhccc
Confidence 67778888899998888899999988654
No 330
>PRK12705 hypothetical protein; Provisional
Probab=20.32 E-value=2.5e+02 Score=35.08 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=29.4
Q ss_pred cccccCCCCcccCCCccceeeecCccCCCccccccccCCCCCCCCCC-CcccCCCcccccccCCCCC
Q 001169 569 ASVMDDSSSTCSTDSVPSVVMYGPYKGNSLANYQNQKSPSRGKNQRG-KSTYDGNVWATETENQPSR 634 (1133)
Q Consensus 569 ~s~~~~~sstcs~ds~~~~~~~g~~~~~~~~~~~~~~s~~rg~~~~~-~~~~~~~~~~~~~~~~ps~ 634 (1133)
..+|.--++-|.++..-+||-=- | -.-|..==|+.-|| |.....|+-.--.||.|..
T Consensus 183 ~~aiqr~a~~~~~e~tvs~v~lp--------~-demkGriIGreGrNir~~E~~tGvdliiddtp~~ 240 (508)
T PRK12705 183 AQAMQRIASETASDLSVSVVPIP--------S-DAMKGRIIGREGRNIRAFEGLTGVDLIIDDTPEA 240 (508)
T ss_pred HHHHHHhccchhhhheeeeeecC--------C-hHhhccccCccchhHHHHHHhhCCceEecCCccc
Confidence 45666667777777766555211 1 01122223566566 3444444444456666655
No 331
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=20.28 E-value=36 Score=38.27 Aligned_cols=48 Identities=31% Similarity=0.300 Sum_probs=29.5
Q ss_pred ccCCchhhhhhhhccccccccccccccccc--------ccCCCCccccccccCCCC
Q 001169 974 DEFPHLDIINDLLDDEHGVGMAAGASTVLQ--------SLSNGPHTLNRQFSFPRD 1021 (1133)
Q Consensus 974 dEFPHLDIINDLL~eeq~~g~~~~~~~~~~--------~~~~~~~~f~~~fs~~g~ 1021 (1133)
+-.|+||||||.|.||--+=+-+=...-+| +++++.+.+.+-|+-.+.
T Consensus 49 ~h~~YLdiIN~il~~eSeN~Kyayeg~nYHwvITdFdIsIdNsS~~lk~~fs~~k~ 104 (249)
T PF11675_consen 49 KHTKYLDIINDILRDESENIKYAYEGGNYHWVITDFDISIDNSSRYLKKKFSKNKI 104 (249)
T ss_pred cchhHHHHHHHHHhccccccceeeeCCceEEEEEeeeEEecCCCHHHHhhhcccch
Confidence 457999999999999765422221111111 356666666666766664
No 332
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.27 E-value=1.5e+02 Score=38.55 Aligned_cols=23 Identities=13% Similarity=-0.042 Sum_probs=17.4
Q ss_pred ceeeehhhHHHHHHHhhcCCCCC
Q 001169 329 DMFVLVDDVLLLLERAALEPLPP 351 (1133)
Q Consensus 329 d~~~l~~Dll~~leR~al~~Lp~ 351 (1133)
+.-||...|..+.|+.-=|.|+-
T Consensus 859 qk~TLLHfLae~~e~kypd~l~F 881 (1102)
T KOG1924|consen 859 QKTTLLHFLAEICEEKYPDILKF 881 (1102)
T ss_pred hhhHHHHHHHHHHHHhChhhhcc
Confidence 34667888888999887777764
No 333
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=20.07 E-value=68 Score=36.03 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=9.8
Q ss_pred cccchhHH----HHHHhhHHhhhHHHHHH
Q 001169 370 FNKDSIER----DERRLTELGRRTVEIFV 394 (1133)
Q Consensus 370 vs~dtve~----ee~~~~Elgrr~~~ifa 394 (1133)
+..|.+++ -+.++.++-.+++.+--
T Consensus 65 ~~~d~l~llS~A~e~rLr~lie~~~~~s~ 93 (264)
T PF05236_consen 65 VDEDVLELLSLATEERLRNLIEKAIVLSR 93 (264)
T ss_dssp E-TCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455552 24444555555554443
Done!