Query 001169
Match_columns 1133
No_of_seqs 395 out of 1274
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hqi_A Speckle-type POZ protei 100.0 1.2E-35 4E-40 321.2 11.7 266 66-394 5-301 (312)
2 2f1z_A Ubiquitin carboxyl-term 99.9 2.7E-27 9.3E-32 274.0 12.8 181 54-254 20-207 (522)
3 2foj_A Ubiquitin carboxyl-term 99.9 5.2E-26 1.8E-30 224.1 14.1 138 52-194 6-150 (155)
4 3ivv_A Speckle-type POZ protei 99.9 6.9E-25 2.4E-29 214.2 13.5 125 65-194 8-145 (145)
5 4gjh_A TNF receptor-associated 99.9 3.9E-24 1.3E-28 217.0 7.2 129 65-193 21-174 (178)
6 1lb6_A TNF receptor-associated 99.9 1.2E-23 4.1E-28 208.8 9.3 129 66-194 3-158 (160)
7 1d00_A Tumor necrosis factor r 99.9 8.2E-24 2.8E-28 211.0 6.9 129 65-193 16-167 (168)
8 4ghu_A TNF receptor-associated 99.9 1.2E-23 4.1E-28 218.1 7.1 131 65-195 37-190 (198)
9 1ca9_A TRAF2, protein (TNF rec 99.9 1.1E-23 3.8E-28 215.6 6.6 129 65-193 40-191 (192)
10 2gkw_A TNF receptor-associated 99.9 4.3E-23 1.5E-27 212.1 6.4 128 66-193 38-188 (192)
11 1flk_A TNF receptor associated 99.8 2.4E-22 8.3E-27 211.9 5.5 128 66-193 74-224 (228)
12 4gwm_A Meprin A subunit beta; 98.9 1.4E-09 5E-14 129.1 10.6 125 68-195 406-569 (592)
13 3htm_A Speckle-type POZ protei 98.2 1.7E-07 5.9E-12 92.3 -0.8 136 210-400 12-165 (172)
14 4eoz_A Speckle-type POZ protei 97.9 7.5E-07 2.6E-11 85.4 -2.5 106 211-363 4-122 (145)
15 3hve_A Gigaxonin; ubiquitin, c 97.6 3.7E-06 1.3E-10 88.6 -3.3 132 265-420 30-181 (256)
16 3ohu_A Transcription regulator 97.2 9.6E-05 3.3E-09 69.9 1.9 81 266-359 32-124 (125)
17 2ihc_A Transcription regulator 97.2 5E-05 1.7E-09 72.1 -0.1 95 229-359 15-121 (124)
18 2z8h_A Transcription regulator 97.2 3.9E-05 1.3E-09 74.1 -0.9 85 266-363 36-132 (138)
19 3b84_A Zinc finger and BTB dom 97.2 2.6E-05 8.9E-10 73.5 -2.3 82 266-361 24-115 (119)
20 3ga1_A Nucleus accumbens-assoc 97.2 0.00014 4.6E-09 69.4 2.5 84 266-363 33-127 (129)
21 3i3n_A Kelch-like protein 11; 97.1 6.2E-06 2.1E-10 88.2 -8.6 114 266-400 32-172 (279)
22 2if5_A Zinc finger and BTB dom 97.1 0.00012 4E-09 68.7 1.0 75 266-350 25-112 (120)
23 2vpk_A Myoneurin; transcriptio 97.0 0.00014 4.6E-09 68.0 0.5 74 266-350 22-107 (116)
24 1r29_A B-cell lymphoma 6 prote 96.9 5.3E-05 1.8E-09 71.8 -2.8 76 266-351 29-117 (127)
25 2yy9_A Zinc finger and BTB dom 96.8 6.2E-05 2.1E-09 72.7 -3.2 83 266-362 25-117 (135)
26 1buo_A POZ domain, protein (pr 96.7 0.00025 8.7E-09 66.8 0.1 75 266-350 28-110 (121)
27 2ppi_A Gigaxonin; BTB domain, 96.7 0.00011 3.9E-09 71.8 -2.4 76 266-351 47-137 (144)
28 2q81_A MIZ-1 protein; BTB/POZ 96.5 0.00054 1.8E-08 64.5 0.7 75 266-350 27-109 (119)
29 3fkc_A Transcriptional regulat 96.4 0.00052 1.8E-08 64.7 0.3 75 266-350 31-114 (116)
30 2vkp_A BTB/POZ domain-containi 95.7 0.00087 3E-08 61.4 -1.9 77 264-350 6-98 (109)
31 3m5b_A Zinc finger and BTB dom 95.1 0.00022 7.5E-09 68.0 -8.6 78 264-351 28-109 (119)
32 3nhe_A Ubiquitin carboxyl-term 68.7 1.1 3.6E-05 48.2 0.1 38 208-254 4-41 (348)
33 3obv_E Protein diaphanous homo 67.3 11 0.00038 43.8 8.2 8 386-393 346-353 (457)
34 3i3t_A Ubiquitin carboxyl-term 64.9 1.3 4.5E-05 47.7 -0.1 35 211-254 1-35 (355)
35 2i1j_A Moesin; FERM, coiled-co 62.8 5 0.00017 48.0 4.3 16 379-394 334-349 (575)
36 1nb8_A Ubiquitin carboxyl-term 60.5 1.8 6.1E-05 47.7 -0.0 36 210-254 3-38 (353)
37 2ayn_A Ubiquitin carboxyl-term 57.3 1.8 6.3E-05 47.8 -0.6 37 210-255 11-47 (404)
38 3rk3_E Complexin-1; snare prot 48.3 51 0.0017 28.7 6.8 35 430-464 25-59 (63)
39 1vjv_A Ubiquitin carboxyl-term 47.9 3.6 0.00012 46.0 -0.3 38 210-256 21-58 (415)
40 3lvh_D LCB, clathrin light cha 46.3 15 0.00051 38.7 4.0 10 416-425 109-118 (205)
41 2zuo_A MVP, major vault protei 46.1 1.1E+02 0.0038 38.4 12.0 66 370-445 638-704 (861)
42 2i1j_A Moesin; FERM, coiled-co 44.8 17 0.00058 43.5 4.8 11 659-669 513-523 (575)
43 3lvg_D LCB, clathrin light cha 42.3 19 0.00067 37.1 4.0 8 416-423 94-101 (190)
44 2y6e_A Ubiquitin carboxyl-term 42.0 4.1 0.00014 44.7 -1.0 35 211-254 6-40 (367)
45 3ajw_A Flagellar FLIJ protein; 41.3 1.8E+02 0.0061 27.8 10.6 28 402-429 74-101 (150)
46 3ihp_A Ubiquitin carboxyl-term 39.5 7.9 0.00027 48.4 0.9 35 210-253 341-375 (854)
47 4efa_G V-type proton ATPase su 39.3 58 0.002 31.7 6.7 33 441-473 30-62 (119)
48 2j1d_G DAAM1, disheveled-assoc 39.2 47 0.0016 38.7 7.3 9 514-522 438-446 (483)
49 1ij5_A Plasmodial specific LAV 37.5 90 0.0031 34.0 8.8 13 412-424 17-29 (323)
50 2gfo_A Ubiquitin carboxyl-term 37.3 5.2 0.00018 44.8 -1.1 36 210-254 59-94 (396)
51 3haj_A Human pacsin2 F-BAR; pa 34.5 2.5E+02 0.0085 32.5 12.3 7 892-898 444-450 (486)
52 3mhs_A Ubiquitin carboxyl-term 33.2 9.1 0.00031 43.6 0.0 35 210-253 138-172 (476)
53 3l9o_A ATP-dependent RNA helic 30.4 17 0.00059 46.6 1.9 14 832-845 510-523 (1108)
54 3mq9_A Bone marrow stromal ant 28.4 3.4E+02 0.012 30.7 11.9 21 407-427 390-410 (471)
55 3l9o_A ATP-dependent RNA helic 27.2 19 0.00065 46.2 1.5 9 1013-1021 705-713 (1108)
56 1ik9_A DNA repair protein XRCC 25.9 4.9E+02 0.017 27.4 11.6 20 417-436 156-175 (213)
57 3oja_A Leucine-rich immune mol 23.5 71 0.0024 36.5 5.1 110 387-497 339-461 (487)
58 3vkg_A Dynein heavy chain, cyt 23.5 4.1E+02 0.014 38.4 13.2 11 557-567 2172-2182(3245)
59 2q2f_A Selenoprotein S; anti-p 23.2 1.7E+02 0.0059 27.2 6.5 7 412-418 42-48 (89)
60 4ady_A RPN2, 26S proteasome re 23.0 15 0.00052 46.6 -0.5 7 338-344 649-655 (963)
61 1f5n_A Interferon-induced guan 22.7 1.4E+02 0.0047 36.1 7.5 8 402-409 442-449 (592)
62 3h0g_A DNA-directed RNA polyme 21.6 20 0.00067 48.3 0.0 10 294-303 770-779 (1752)
63 2j1d_G DAAM1, disheveled-assoc 21.4 85 0.0029 36.6 5.3 15 330-344 258-272 (483)
64 1i84_S Smooth muscle myosin he 21.2 3.6E+02 0.012 34.9 11.3 14 230-243 662-675 (1184)
65 3vkg_A Dynein heavy chain, cyt 20.6 5.9E+02 0.02 36.9 13.8 8 72-79 1333-1340(3245)
66 3ajw_A Flagellar FLIJ protein; 20.6 5.5E+02 0.019 24.3 11.4 12 434-445 110-121 (150)
No 1
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=100.00 E-value=1.2e-35 Score=321.19 Aligned_cols=266 Identities=23% Similarity=0.350 Sum_probs=212.9
Q ss_pred cccEEEEEEcCccccC---CCeeeCCceeecCe---EEEEEEEeCCCCC--CCcEEEEEEEecCCCCCCCceEEEEEEEE
Q 001169 66 LYGKYTWRIEKFSQIS---KRELRSNAFEVGGY---KWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTIA 137 (1133)
Q Consensus 66 ~tGshtWKIdNFS~LK---ge~I~Sp~FsVGGh---kWRI~vYPnG~~~--~dyLSLYLeL~s~esl~p~WsV~AqFtfs 137 (1133)
..++|+|+|.|||.++ ++.+.|++|.+||| +|+|++||+|.+. .+||||||+|.... .|.|.|+|+|.
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~----~~~v~a~~~~~ 80 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFS 80 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC----C-CEEEEEEEE
T ss_pred EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC----CCcEEEEEEEE
Confidence 4689999999999996 67899999999996 9999999999753 68999999998653 79999999999
Q ss_pred EEeCCCCCceec--ccceecccCCCCcccccceeccccc---cCCccCCeEEEEEEEEEeeecCCCCcccccccccceee
Q 001169 138 VVNRDPKKSKYS--DTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELV 212 (1133)
Q Consensus 138 LLNQdGk~S~sk--essh~Fs~ke~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd~~~~p~r~l~~ds~ketV 212 (1133)
|+|++|...... ...++|.. ..+|||.+||+|++|+ ++||+||+|+|+|+|+|+++..... .......+
T Consensus 81 l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~-----~~~~~~~~ 154 (312)
T 3hqi_A 81 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNIS-----GQNTMNMV 154 (312)
T ss_dssp EECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEE-----CCCCCSSC
T ss_pred EEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecccccc-----cccccccc
Confidence 999988654322 45688875 5689999999999996 4899999999999999997643211 11223467
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhh---hhhHH
Q 001169 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEV---TSTLV 289 (1133)
Q Consensus 213 ~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ffa~keV---tSplv 289 (1133)
.||++++.. +|+.|++++. .+||+|.|.+++|++||.| +||+|
T Consensus 155 ~~p~~~l~~-----------~l~~l~~~~~-----------------------~~Dv~l~v~~~~f~~Hk~vLaa~S~~F 200 (312)
T 3hqi_A 155 KVPECRLAD-----------ELGGLWENSR-----------------------FTDCCLCVAGQEFQAHKAILAARSPVF 200 (312)
T ss_dssp CCCCCCHHH-----------HHHHHHHTTC-----------------------SCCEEEEETTEEEEECHHHHHHHCHHH
T ss_pred CCCCchHHH-----------HHHHHHhCCC-----------------------CCceEEEECCEEEeHHHHHHHHcCHHH
Confidence 899999988 9999998765 3999999999999999977 78988
Q ss_pred HHHHhhccc----------ccccccccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCCCCCCCCCCcc
Q 001169 290 MDSLYSGLK----------ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQN 359 (1133)
Q Consensus 290 md~Lf~glk----------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~Lp~~d~~~~q~ 359 (1133)
.+.++++|+ ++++.. ++.+++++|++.++... ..+.+||.+++++.++.|.. .|.+.
T Consensus 201 ~~~f~~~~~e~~~~~i~l~~~~~~~--f~~~L~~iYt~~~~~~~--------~~~~~ll~~A~~~~~~~l~~---~c~~~ 267 (312)
T 3hqi_A 201 SAMFEHEMEESKKNRVEINDVEPEV--FKEMMCFIYTGKAPNLD--------KMADDLLAAADKYALERLKV---MCEDA 267 (312)
T ss_dssp HHHTTC-----CCSEEEECSSCHHH--HHHHHHHHHHSCCTTHH--------HHHHHHHHHHHHTTCHHHHH---HHHHH
T ss_pred HHHhccCccccCCceEEecCCCHHH--HHHHHHhhcCCCCCChH--------HHHHHHHHHHHHhCHHHHHH---HHHHH
Confidence 877666553 344443 88889999999876432 25789999999999999986 69888
Q ss_pred ccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHH
Q 001169 360 RTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFV 394 (1133)
Q Consensus 360 ~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa 394 (1133)
+.+. ++.+++. .+.|+|.+|+.+|++++.
T Consensus 268 l~~~------~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 301 (312)
T 3hqi_A 268 LCSN------LSVENAAEILILADLHSADQLKTQAVDFIN 301 (312)
T ss_dssp HHTT------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcc------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8876 5555554 289999999999999987
No 2
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.94 E-value=2.7e-27 Score=274.03 Aligned_cols=181 Identities=24% Similarity=0.359 Sum_probs=143.9
Q ss_pred CCCCCCCCCccccccEEEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCC---CCCcEEEEEEEecCCCCCCCceE
Q 001169 54 DDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCD---VCNHLSLFLCVANHDKLLPGWSH 130 (1133)
Q Consensus 54 ~m~ddg~~~ps~~tGshtWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~---~~dyLSLYLeL~s~esl~p~WsV 130 (1133)
.|++|. + ....++|+|+|+|||.+++ .++|++|.+|||+|+|++||+|+. ..+||||||+|... ..+.+|.|
T Consensus 20 ~~~~~~-~--~~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v 94 (522)
T 2f1z_A 20 DMEDDT-S--WRSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSC 94 (522)
T ss_dssp -------C--CCSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBE
T ss_pred cccccc-c--ccCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceE
Confidence 466664 3 5678999999999999976 799999999999999999999963 36899999999765 44568999
Q ss_pred EEEEEEEEEeCCCC-CceecccceecccCCCCcccccceeccccc---cCCccCCeEEEEEEEEEeeecCCCCccccccc
Q 001169 131 FAQFTIAVVNRDPK-KSKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQ 206 (1133)
Q Consensus 131 ~AqFtfsLLNQdGk-~S~skessh~Fs~ke~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd~~~~p~r~l~~d 206 (1133)
+|+|+|.|+|+.+. .+..+...|+|.....+|||.+||+|++|. ++||+||+|+|+|+|+|.... ...|+
T Consensus 95 ~a~f~l~l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~------g~~~~ 168 (522)
T 2f1z_A 95 HAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH------GVAWD 168 (522)
T ss_dssp EEEEEEEECCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB------SSCCC
T ss_pred EEEEEEEEEcCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc------cccCC
Confidence 99999999998643 334456778898767899999999999993 699999999999999995432 13477
Q ss_pred ccceeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 207 YRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 207 s~ketV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
.+..++.||+.|+|.|| +|+.+||...+...||.+++.+
T Consensus 169 ~~~~~g~~GL~NlGnTC---------YmNSvLQ~L~~~~~fr~~~~~~ 207 (522)
T 2f1z_A 169 SKKHTGYVGLKNQGATC---------YMNSLLQTLFFTNQLRKAVYMM 207 (522)
T ss_dssp TTTTTSCCCBCCC--CT---------THHHHHHHHHTCHHHHHHHHTC
T ss_pred ccccCCccceecCcccH---------HHHHHHHHHhccHHHHHHHhhc
Confidence 78889999999999999 9999999999888888876544
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.93 E-value=5.2e-26 Score=224.10 Aligned_cols=138 Identities=27% Similarity=0.455 Sum_probs=109.9
Q ss_pred CCCCCCCCCCCccccccEEEEEEcCccccCCCeeeCCceeecCeEEEEEEEeCCCC---CCCcEEEEEEEecCCCCCCCc
Q 001169 52 DTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCD---VCNHLSLFLCVANHDKLLPGW 128 (1133)
Q Consensus 52 d~~m~ddg~~~ps~~tGshtWKIdNFS~LKge~I~Sp~FsVGGhkWRI~vYPnG~~---~~dyLSLYLeL~s~esl~p~W 128 (1133)
+.+||||. . ....++|+|+|.|||.++ +.++|++|.+|||+|+|++||+|+. ..+||||||+|... ..+..|
T Consensus 6 ~~~~~~~~-~--~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w 80 (155)
T 2foj_A 6 EEDMEDDT-S--WRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSW 80 (155)
T ss_dssp -------C-T--TCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSC
T ss_pred ccccccCC-C--cCCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCC
Confidence 35677764 2 557899999999999995 7799999999999999999999974 36899999999643 344579
Q ss_pred eEEEEEEEEEEeCCCCC-ceecccceecccCCCCcccccceeccccc---cCCccCCeEEEEEEEEEeee
Q 001169 129 SHFAQFTIAVVNRDPKK-SKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIRE 194 (1133)
Q Consensus 129 sV~AqFtfsLLNQdGk~-S~skessh~Fs~ke~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd 194 (1133)
.|+|+|+|.|+|+.+.. +..+...++|.....+|||.+||+|++|+ ++||+||+|+|+|+|+|.++
T Consensus 81 ~v~a~~~l~l~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~ 150 (155)
T 2foj_A 81 SCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP 150 (155)
T ss_dssp EEEEEEEEEECCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCC
T ss_pred EEEEEEEEEEEcCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCc
Confidence 99999999999997654 34445678898767889999999999994 79999999999999999554
No 4
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.92 E-value=6.9e-25 Score=214.21 Aligned_cols=125 Identities=29% Similarity=0.538 Sum_probs=108.0
Q ss_pred ccccEEEEEEcCccccC---CCeeeCCceeecCe---EEEEEEEeCCCCC--CCcEEEEEEEecCCCCCCCceEEEEEEE
Q 001169 65 ELYGKYTWRIEKFSQIS---KRELRSNAFEVGGY---KWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTI 136 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LK---ge~I~Sp~FsVGGh---kWRI~vYPnG~~~--~dyLSLYLeL~s~esl~p~WsV~AqFtf 136 (1133)
...++|+|+|+|||.++ ++.+.|++|.+||| +|+|++||+|+.. .+||||||+|... +.|.|+|+|+|
T Consensus 8 ~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l 83 (145)
T 3ivv_A 8 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKF 83 (145)
T ss_dssp CCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEE
T ss_pred EEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEE
Confidence 46799999999999987 47899999999996 9999999999763 6899999999875 37999999999
Q ss_pred EEEeCCCCCcee--cccceecccCCCCcccccceeccccc---cCCccCCeEEEEEEEEEeee
Q 001169 137 AVVNRDPKKSKY--SDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIRE 194 (1133)
Q Consensus 137 sLLNQdGk~S~s--kessh~Fs~ke~dWGwskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd 194 (1133)
+|+|+++..... ....++|.. ..+|||.+||+|++|+ ++||+||+|+|+|+|+|+++
T Consensus 84 ~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 84 SILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999998765332 235688864 6889999999999994 69999999999999999874
No 5
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.89 E-value=3.9e-24 Score=217.03 Aligned_cols=129 Identities=22% Similarity=0.378 Sum_probs=106.5
Q ss_pred ccccEEEEEEcCccccCC-------CeeeCCceeec--CeEEEEEEEeCCCCC--CCcEEEEEEEecCCCC-CCCceEEE
Q 001169 65 ELYGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LKg-------e~I~Sp~FsVG--GhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl-~p~WsV~A 132 (1133)
...|+|+|+|+|||.+++ ..+.|++|++| ||+|+|++||+|+.. ++||||||+|.+...+ ...|.|+|
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence 577999999999999863 27999999999 999999999999753 6899999999765432 23799999
Q ss_pred EEEEEEEeCCCCCc-eec-----ccceeccc----CCCCcccccceecccccc---CCccCCeEEEEEEEEEee
Q 001169 133 QFTIAVVNRDPKKS-KYS-----DTLHRFWK----KEHDWGWKKFMELSKVSD---GFKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 133 qFtfsLLNQdGk~S-~sk-----essh~Fs~----ke~dWGwskFIkrsdLEs---GFLvDDsLTIeCdVtVIk 193 (1133)
+|+|.|+||++... ... ...+.|.. ...+|||.+||++++|++ +||+||+|+|+|+|.|.+
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 99999999986532 221 13467763 356899999999999994 999999999999997754
No 6
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.89 E-value=1.2e-23 Score=208.84 Aligned_cols=129 Identities=22% Similarity=0.406 Sum_probs=101.7
Q ss_pred cccEEEEEEcCccccCC-----C--eeeCCceeec--CeEEEEEEEeCCCCC---CCcEEEEEEEecCCCC-CCCceEEE
Q 001169 66 LYGKYTWRIEKFSQISK-----R--ELRSNAFEVG--GYKWYILIYPQGCDV---CNHLSLFLCVANHDKL-LPGWSHFA 132 (1133)
Q Consensus 66 ~tGshtWKIdNFS~LKg-----e--~I~Sp~FsVG--GhkWRI~vYPnG~~~---~dyLSLYLeL~s~esl-~p~WsV~A 132 (1133)
..|+|+|+|+|||.+++ + .+.|++|.+| ||+|+|++||+|++. ++||||||++++.+.+ ...|.++|
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 56899999999999863 3 8999999999 999999999999753 6899999999876543 23699999
Q ss_pred EEEEEEEeCCCCCc---eec-----ccceeccc-----CCCCcccccceeccccc-cCCccCCeEEEEEEEEEeee
Q 001169 133 QFTIAVVNRDPKKS---KYS-----DTLHRFWK-----KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQVIRE 194 (1133)
Q Consensus 133 qFtfsLLNQdGk~S---~sk-----essh~Fs~-----ke~dWGwskFIkrsdLE-sGFLvDDsLTIeCdVtVIkd 194 (1133)
+|+|+|+||.+... ... ...+.|.. ...+|||.+||++++|+ ++||+||+|+|+|+|.|+.+
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEeec
Confidence 99999999976421 101 11234532 12379999999999999 68999999999999999875
No 7
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.89 E-value=8.2e-24 Score=210.98 Aligned_cols=129 Identities=26% Similarity=0.413 Sum_probs=105.2
Q ss_pred ccccEEEEEEcCccccCC-----C--eeeCCcee--ecCeEEEEEEEeCCCC--CCCcEEEEEEEecCCCCC-CCceEEE
Q 001169 65 ELYGKYTWRIEKFSQISK-----R--ELRSNAFE--VGGYKWYILIYPQGCD--VCNHLSLFLCVANHDKLL-PGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LKg-----e--~I~Sp~Fs--VGGhkWRI~vYPnG~~--~~dyLSLYLeL~s~esl~-p~WsV~A 132 (1133)
...|+|+|+|+|||.+++ + .++|++|. +|||+|+|++||+|+. .++||||||+|.+...+. ..|.++|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 367999999999999863 2 39999996 8999999999999975 368999999998765432 4799999
Q ss_pred EEEEEEEeCCCCCceecc-----cceeccc----CCCCcccccceecccccc--CCccCCeEEEEEEEEEee
Q 001169 133 QFTIAVVNRDPKKSKYSD-----TLHRFWK----KEHDWGWKKFMELSKVSD--GFKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 133 qFtfsLLNQdGk~S~ske-----ssh~Fs~----ke~dWGwskFIkrsdLEs--GFLvDDsLTIeCdVtVIk 193 (1133)
+|+|.|+|+++.+..... ..+.|.. ...+|||.+||++++|++ +||+||+|+|+|+|+|.+
T Consensus 96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEecC
Confidence 999999999876532211 1245653 357899999999999994 899999999999998753
No 8
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.88 E-value=1.2e-23 Score=218.09 Aligned_cols=131 Identities=21% Similarity=0.362 Sum_probs=107.1
Q ss_pred ccccEEEEEEcCccccCC-------CeeeCCceeec--CeEEEEEEEeCCCCC--CCcEEEEEEEecCCCC-CCCceEEE
Q 001169 65 ELYGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LKg-------e~I~Sp~FsVG--GhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl-~p~WsV~A 132 (1133)
...|+|+|+|+|||.+++ +.+.|++|++| ||+|+|++||+|+.. ++||||||+|++.+.+ ...|.|.|
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a 116 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence 467999999999999864 68999999999 999999999999763 6899999999876542 24799999
Q ss_pred EEEEEEEeCCCCC-ceecc-----cceec----ccCCCCcccccceeccccc-cCCccCCeEEEEEEEEEeeec
Q 001169 133 QFTIAVVNRDPKK-SKYSD-----TLHRF----WKKEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQVIREK 195 (1133)
Q Consensus 133 qFtfsLLNQdGk~-S~ske-----ssh~F----s~ke~dWGwskFIkrsdLE-sGFLvDDsLTIeCdVtVIkd~ 195 (1133)
+|+|.|+||.+.. +.... ....| ...+.+|||.+||++++|+ ++||+||+|+|+|+|.|+..+
T Consensus 117 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEeccCC
Confidence 9999999997653 22110 11233 3345789999999999999 699999999999999988753
No 9
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.88 E-value=1.1e-23 Score=215.62 Aligned_cols=129 Identities=26% Similarity=0.429 Sum_probs=105.8
Q ss_pred ccccEEEEEEcCccccCC-----C--eeeCCceee--cCeEEEEEEEeCCCCC--CCcEEEEEEEecCCCCC-CCceEEE
Q 001169 65 ELYGKYTWRIEKFSQISK-----R--ELRSNAFEV--GGYKWYILIYPQGCDV--CNHLSLFLCVANHDKLL-PGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtWKIdNFS~LKg-----e--~I~Sp~FsV--GGhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl~-p~WsV~A 132 (1133)
...|+|+|+|+|||.+++ + .++|++|.+ |||+|+|++||+|+.. ++||||||+|.....+. ..|.|+|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 367999999999999863 2 599999999 9999999999999753 68999999998765432 4799999
Q ss_pred EEEEEEEeCCCCCceecc-----cceeccc----CCCCcccccceeccccc--cCCccCCeEEEEEEEEEee
Q 001169 133 QFTIAVVNRDPKKSKYSD-----TLHRFWK----KEHDWGWKKFMELSKVS--DGFKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 133 qFtfsLLNQdGk~S~ske-----ssh~Fs~----ke~dWGwskFIkrsdLE--sGFLvDDsLTIeCdVtVIk 193 (1133)
+|+|.|+|+++....... ..+.|.. ...+|||.+||++++|+ ++||+||+|+|+|+|+|++
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEecC
Confidence 999999999876432111 1234642 25689999999999998 6899999999999998854
No 10
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.87 E-value=4.3e-23 Score=212.14 Aligned_cols=128 Identities=23% Similarity=0.383 Sum_probs=105.0
Q ss_pred cccEEEEEEcCccccC-----CC--eeeCCceeec--CeEEEEEEEeCCCC--CCCcEEEEEEEecCCCC-CCCceEEEE
Q 001169 66 LYGKYTWRIEKFSQIS-----KR--ELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQ 133 (1133)
Q Consensus 66 ~tGshtWKIdNFS~LK-----ge--~I~Sp~FsVG--GhkWRI~vYPnG~~--~~dyLSLYLeL~s~esl-~p~WsV~Aq 133 (1133)
..|+|+|+|+|||.++ ++ .++|++|++| ||+|+|++||+|+. .++||||||++++.+.+ ...|.++|+
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 6799999999999986 23 5999999999 99999999999975 36899999999876543 237999999
Q ss_pred EEEEEEeCCCCCc-eec-----ccceecccC----CCCcccccceeccccc-cCCccCCeEEEEEEEEEee
Q 001169 134 FTIAVVNRDPKKS-KYS-----DTLHRFWKK----EHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 134 FtfsLLNQdGk~S-~sk-----essh~Fs~k----e~dWGwskFIkrsdLE-sGFLvDDsLTIeCdVtVIk 193 (1133)
|+|+|+||.+.+. ... ...+.|... ..+|||.+||++++|+ ++||+||+|+|+|+|.|..
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcCC
Confidence 9999999977632 211 123667542 4689999999999999 6899999999999997643
No 11
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.85 E-value=2.4e-22 Score=211.94 Aligned_cols=128 Identities=23% Similarity=0.384 Sum_probs=105.4
Q ss_pred cccEEEEEEcCccccCC-------CeeeCCceeec--CeEEEEEEEeCCCCC--CCcEEEEEEEecCCCC-CCCceEEEE
Q 001169 66 LYGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQ 133 (1133)
Q Consensus 66 ~tGshtWKIdNFS~LKg-------e~I~Sp~FsVG--GhkWRI~vYPnG~~~--~dyLSLYLeL~s~esl-~p~WsV~Aq 133 (1133)
..|+|+|+|.|||.+++ ..++|++|++| ||+|+|++||+|++. ++||||||++++.+.+ ...|.+.|+
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~ 153 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 153 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEE
Confidence 67999999999999863 37999999999 999999999999753 7899999999876543 237999999
Q ss_pred EEEEEEeCCCCC-ceec-----ccceeccc----CCCCcccccceeccccc-cCCccCCeEEEEEEEEEee
Q 001169 134 FTIAVVNRDPKK-SKYS-----DTLHRFWK----KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 134 FtfsLLNQdGk~-S~sk-----essh~Fs~----ke~dWGwskFIkrsdLE-sGFLvDDsLTIeCdVtVIk 193 (1133)
|+|+|+||.+.+ +... ...+.|.. ...+|||.+||++++|+ ++||+||+|+|+|+|.|.+
T Consensus 154 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 154 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp EEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTT
T ss_pred EEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEccc
Confidence 999999997664 2211 12345752 24689999999999999 6899999999999998854
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.94 E-value=1.4e-09 Score=129.08 Aligned_cols=125 Identities=19% Similarity=0.321 Sum_probs=95.6
Q ss_pred cEEEEEEcCccccC---CCeeeCCceee-cCeEEEEEEEeCCCCCCCcEEEEEEEecCCCC-CCCceEE-EEEEEEEEeC
Q 001169 68 GKYTWRIEKFSQIS---KRELRSNAFEV-GGYKWYILIYPQGCDVCNHLSLFLCVANHDKL-LPGWSHF-AQFTIAVVNR 141 (1133)
Q Consensus 68 GshtWKIdNFS~LK---ge~I~Sp~FsV-GGhkWRI~vYPnG~~~~dyLSLYLeL~s~esl-~p~WsV~-AqFtfsLLNQ 141 (1133)
-.+.|+|.||+++. +..++||.|+- .||.++|.+||++ ..|+|||++|+.++.+ ...|.+. -+++|.||||
T Consensus 406 P~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~---~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ 482 (592)
T 4gwm_A 406 PHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH---VTNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQ 482 (592)
T ss_dssp CSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS---SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCC
T ss_pred CCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC---CceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCC
Confidence 35999999999986 46799999984 6999999999987 5799999999987654 2479984 6799999999
Q ss_pred CCCC----ceec----c-------cceecc------------c-----CCCCcccccceeccccc-cCCccCCeEEEEEE
Q 001169 142 DPKK----SKYS----D-------TLHRFW------------K-----KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQ 188 (1133)
Q Consensus 142 dGk~----S~sk----e-------ssh~Fs------------~-----ke~dWGwskFIkrsdLE-sGFLvDDsLTIeCd 188 (1133)
++.. +... . ....|. . ...+|||..||+++.|. ..||+||.|.|.++
T Consensus 483 ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fiK~d~~~i~~~ 562 (592)
T 4gwm_A 483 NPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFIKGDDVYILLT 562 (592)
T ss_dssp CSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSSBTTBEEEEEE
T ss_pred CCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcccCCeEEEEEE
Confidence 7542 1100 0 011121 1 13468999999999999 57999999999999
Q ss_pred EEEeeec
Q 001169 189 VQVIREK 195 (1133)
Q Consensus 189 VtVIkd~ 195 (1133)
|.=+...
T Consensus 563 ~eD~~~l 569 (592)
T 4gwm_A 563 VEDISHL 569 (592)
T ss_dssp EEECGGG
T ss_pred EEeCccc
Confidence 9766553
No 13
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.17 E-value=1.7e-07 Score=92.31 Aligned_cols=136 Identities=19% Similarity=0.208 Sum_probs=102.4
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhh---hh
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEV---TS 286 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ffa~keV---tS 286 (1133)
..+.+|++.+.. +|..|++++. .+||+|.|.++.|.+||.| +|
T Consensus 12 ~~~~~p~~~l~~-----------~l~~l~~~~~-----------------------~~Dv~l~v~~~~~~~Hk~iL~~~S 57 (172)
T 3htm_A 12 NMVKVPECRLAD-----------ELGGLWENSR-----------------------FTDCCLCVAGQEFQAHKAILAARS 57 (172)
T ss_dssp CCSCCCCCCHHH-----------HHHHHHHHTC-----------------------SCCEEEEETTEEEEECHHHHHHHC
T ss_pred ccCCCCHHHHHH-----------HHHHHHhCCC-----------------------CcceEEEECCEEEEeeHHHHHHcC
Confidence 467788888877 8999988765 3899999999999999987 67
Q ss_pred hHHHHHHhhccc----------ccccccccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCCCCCCCCC
Q 001169 287 TLVMDSLYSGLK----------ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKG 356 (1133)
Q Consensus 287 plvmd~Lf~glk----------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~Lp~~d~~~ 356 (1133)
++|.+.+.++++ ++.+. .++.+++++|++.++... ..+.+||.+++++.++.|.. .|
T Consensus 58 ~~F~~~f~~~~~e~~~~~i~l~~~~~~--~f~~~l~~~Yt~~~~~~~--------~~~~~ll~~A~~~~~~~l~~---~c 124 (172)
T 3htm_A 58 PVFSAMFEHEMEESKKNRVEINDVEPE--VFKEMMCFIYTGKAPNLD--------KMADDLLAAADKYALERLKV---MC 124 (172)
T ss_dssp HHHHHHHHSCCCGGGTTEEEECSSCHH--HHHHHHHHHHHSCCTTGG--------GTHHHHHHHHHHTTCHHHHH---HH
T ss_pred HHHHHHHccCccccCCCeEEecCCCHH--HHHHHHHHHhCCCCCCcH--------HHHHHHHHHHHHhCcHHHHH---HH
Confidence 887776655543 22222 277778999999876322 13578999999999998875 58
Q ss_pred CccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhh
Q 001169 357 PQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFS 400 (1133)
Q Consensus 357 ~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~ 400 (1133)
.+.+.+. ++.+++. .+.+++.+|..+|+++.. ++|.
T Consensus 125 ~~~l~~~------l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~--~~~~ 165 (172)
T 3htm_A 125 EDALCSN------LSVENAAEILILADLHSADQLKTQAVDFIN--YHAT 165 (172)
T ss_dssp HHHHHHT------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH--HTC-
T ss_pred HHHHHHh------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHHH
Confidence 8777765 4455543 289999999999999987 4553
No 14
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=97.88 E-value=7.5e-07 Score=85.40 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=76.4
Q ss_pred eeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhh---hhh
Q 001169 211 LVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEV---TST 287 (1133)
Q Consensus 211 tV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ffa~keV---tSp 287 (1133)
.+.+|++.+.. +|..|++++. .+||+|.|.++.|.+||.| +|+
T Consensus 4 ~v~~p~~~l~~-----------~l~~l~~~~~-----------------------~~Dv~l~v~~~~~~~Hk~iL~~~S~ 49 (145)
T 4eoz_A 4 MVKVPECRLAD-----------ELGGLWENSR-----------------------FTDCCLCVAGQEFQAHKAILAARSP 49 (145)
T ss_dssp -CCCCCCCHHH-----------HHHHHHHHTC-----------------------SCCEEEEETTEEEEECHHHHHHHCH
T ss_pred cccCChHHHHH-----------HHHHHHhCCC-----------------------CcceEEEECCEEEEeehHHHHHcCH
Confidence 57789999887 8999998765 3899999999999999987 678
Q ss_pred HHHHHHhhccc----------ccccccccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCCCCCCCCCC
Q 001169 288 LVMDSLYSGLK----------ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGP 357 (1133)
Q Consensus 288 lvmd~Lf~glk----------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~Lp~~d~~~~ 357 (1133)
+|.+-+.++++ ++.+. .++.+++++|++.++... ..+.+|+.+++++.++.|.. .|.
T Consensus 50 ~F~~~f~~~~~e~~~~~i~l~~~~~~--~~~~~l~~~Y~~~~~~~~--------~~~~~ll~~A~~~~~~~l~~---~c~ 116 (145)
T 4eoz_A 50 VFSAMFEHEMEESKKNRVEINDVEPE--VFKEMMCFIYTGKAPNLD--------KMADDLLAAADKYALERLKV---MCE 116 (145)
T ss_dssp HHHHHHHSSSHHHHHTEEEECSSCHH--HHHHHHHHHHHSCCTTGG--------GTHHHHHHHHHHTTCHHHHH---HHH
T ss_pred HHHHHHcCCCcCCCCceEEecCCCHH--HHHHHHHhhccCccCCcH--------HHHHHHHHHHHHhCHHHHHH---HHH
Confidence 77666554432 22222 377788999999876322 13578999999999988865 576
Q ss_pred cccccc
Q 001169 358 QNRTKE 363 (1133)
Q Consensus 358 q~~~~~ 363 (1133)
+.+.+.
T Consensus 117 ~~l~~~ 122 (145)
T 4eoz_A 117 DALCSN 122 (145)
T ss_dssp CC----
T ss_pred HHHHHh
Confidence 666654
No 15
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=97.57 E-value=3.7e-06 Score=88.63 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=88.8
Q ss_pred ccchhhhhhhhhhhcchhhh---hhhHHHHHHhhccc------------ccccccccccccccccccCCCCCCceEeecc
Q 001169 265 EKTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK------------ALEGQSKSKKTKAKLLDAEDTPPPIVHVEND 329 (1133)
Q Consensus 265 e~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk------------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d 329 (1133)
..+||+|.|+++.|.+||.| +|++|.+-+.++++ ++.+. .++.+++++|++.++-..
T Consensus 30 ~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~--~f~~ll~~~Yt~~~~i~~------ 101 (256)
T 3hve_A 30 RFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVM--VMREILDYIFSGQIRLNE------ 101 (256)
T ss_dssp CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHH--HHHHHHHHHHHSCCCCC-------
T ss_pred CCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHH--HHHHHHhhccCCCCcccH------
Confidence 35999999999999999987 66776554444443 22222 277778999998875222
Q ss_pred eeeehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHH
Q 001169 330 MFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIE 404 (1133)
Q Consensus 330 ~~~l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~ri~ 404 (1133)
.-+.+||.+++++.++.|.. .|.+.+.+. ++.+++- .+.++|.+|..+|+++.. ++|. .
T Consensus 102 --~~v~~ll~~A~~l~i~~l~~---~c~~~L~~~------l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~--~~f~---~ 165 (256)
T 3hve_A 102 --DTIQDVVQAADLLLLTDLKT---LCCEFLEGC------IAAENCIGIRDFALHYCLHHVHYLATEYLE--THFR---D 165 (256)
T ss_dssp --CCHHHHHHHHHHHTCHHHHH---HHHHHHHHT------CCSSTTHHHHHHHHHTTCHHHHHHHHHHHH--HHHH---H
T ss_pred --hHHHHHHHHHHHHChHHHHH---HHHHHHHhh------CCHhhHHHHHHHHHHcCcHHHHHHHHHHHH--HHHH---H
Confidence 13689999999999998875 588777766 4444432 289999999999999875 5664 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001169 405 VAYQEAVALKRQEELI 420 (1133)
Q Consensus 405 ~Ay~E~~A~~rQ~~Ll 420 (1133)
+.-.+.+..+..+.|.
T Consensus 166 v~~~~~f~~L~~~~l~ 181 (256)
T 3hve_A 166 VSSTEEFLELSPQKLK 181 (256)
T ss_dssp HTTCHHHHSSCHHHHH
T ss_pred HhCCcchhcCCHHHHH
Confidence 3334555444444333
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=97.21 E-value=9.6e-05 Score=69.86 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=60.0
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhccc--------c-cccccccccccccccccCCCCCCceEeecceeee
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK--------A-LEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVL 333 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk--------~-le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l 333 (1133)
.+||+|.|.++.|.+||.| +|++|.+-+.++++ + +.+. .++.+++++|++.++ +..+ -
T Consensus 32 ~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~--~f~~~l~~iYtg~~~-----~~~~---~ 101 (125)
T 3ohu_A 32 LCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTAR--GFGPLLQFAYTAKLL-----LSRE---N 101 (125)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHH--HHHHHHHHHTTSEEE-----ECTT---T
T ss_pred ccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHH--HHHHHHHhHcCCceE-----ECHH---H
Confidence 4999999999999999987 77877766555443 2 3332 377788999998753 1111 3
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCCCcc
Q 001169 334 VDDVLLLLERAALEPLPPKDEKGPQN 359 (1133)
Q Consensus 334 ~~Dll~~leR~al~~Lp~~d~~~~q~ 359 (1133)
+.+||.+++++.++.|.. .|.+.
T Consensus 102 v~~ll~~A~~l~i~~L~~---~C~~~ 124 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLED---SCFSF 124 (125)
T ss_dssp HHHHHHHHHHHTBSSCTT---SSCCC
T ss_pred HHHHHHHHHHhCCHHHHH---HHHHh
Confidence 679999999999999976 57653
No 17
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=97.21 E-value=5e-05 Score=72.11 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=68.4
Q ss_pred HHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhh---hhhHHHHHHhhccc-------
Q 001169 229 ERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK------- 298 (1133)
Q Consensus 229 d~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk------- 298 (1133)
.+.++|++|++++. .+||+|.|.++.|.+||.| +|++|.+-+.++++
T Consensus 15 ~l~~~l~~l~~~~~-----------------------~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l 71 (124)
T 2ihc_A 15 NVLLSLNDQRKKDV-----------------------LCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITL 71 (124)
T ss_dssp HHHHHHHHHHHHTC-----------------------SCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEEC
T ss_pred HHHHHHHHHHhcCC-----------------------CcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEee
Confidence 34557888877654 4999999999999999977 77877766555542
Q ss_pred --ccccccccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCCCCCCCCCCcc
Q 001169 299 --ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQN 359 (1133)
Q Consensus 299 --~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~Lp~~d~~~~q~ 359 (1133)
.+.+ ..++.+++++|++.++ +..+ -+.+||.+++++.++.|.. .|.+.
T Consensus 72 ~~~v~~--~~f~~lL~~iYtg~~~-----i~~~---~v~~ll~~A~~~~~~~L~~---~C~~~ 121 (124)
T 2ihc_A 72 PEEVTV--KGFEPLIQFAYTAKLI-----LSKE---NVDEVCKCVEFLSVHNIEE---SCFQF 121 (124)
T ss_dssp CTTSCH--HHHHHHHHHHHHSEEE-----EETT---THHHHHHHHHHHTBSSCCG---GGGGT
T ss_pred cCCcCH--HHHHHHHHHhcCCCcc-----cCHH---HHHHHHHHHHHHCCHHHHH---HHHHH
Confidence 2222 2377789999998753 1211 3689999999999999975 56554
No 18
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=97.20 E-value=3.9e-05 Score=74.13 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=61.7
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhccc---------ccccccccccccccccccCCCCCCceEeecceeee
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK---------ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVL 333 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk---------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l 333 (1133)
.+||+|.|.++.|.+||.| +|++|.+-+.++++ .+.+ ..++.+++++|++.++... + -
T Consensus 36 ~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~--~~~~~lL~~~Ytg~~~i~~-----~---~ 105 (138)
T 2z8h_A 36 LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTV--KGFEPLIQFAYTAKLILSK-----D---N 105 (138)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCH--HHHHHHHHHHHHSCCCCCT-----T---T
T ss_pred CcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCH--HHHHHHHHHhcCCCcccCH-----H---H
Confidence 4999999999999999987 67877766555543 2222 2377788999999875322 1 2
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCCCcccccc
Q 001169 334 VDDVLLLLERAALEPLPPKDEKGPQNRTKE 363 (1133)
Q Consensus 334 ~~Dll~~leR~al~~Lp~~d~~~~q~~~~~ 363 (1133)
+.+||.+++++.++.|.. .|.+.+.+.
T Consensus 106 v~~ll~~A~~~~i~~L~~---~C~~~l~~~ 132 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEE---SCFQFLKFK 132 (138)
T ss_dssp HHHHHHHHHHHTCGGGHH---HHHHHTTCC
T ss_pred HHHHHHHHHHhCCHHHHH---HHHHHHHHh
Confidence 678999999999988864 466655544
No 19
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=97.18 E-value=2.6e-05 Score=73.55 Aligned_cols=82 Identities=18% Similarity=0.033 Sum_probs=58.9
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhc-------ccccccccccccccccccccCCCCCCceEeecceeeehh
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG-------LKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVD 335 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~g-------lk~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~ 335 (1133)
.+||+|.|+++.|.+||.| +||+|.+ +|.+ +.++.+.. ++.+++++|++.++... . -+.
T Consensus 24 ~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~-~f~~~~~~~i~l~~~~~~~--f~~ll~~iYtg~~~~~~----~----~v~ 92 (119)
T 3b84_A 24 YCDATLDVGGLVFKAHWSVLACCSHFFQS-LYGDGSGGSVVLPAGFAEI--FGLLLDFFYTGHLALTS----G----NRD 92 (119)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHH-HHTTTTCCCEEECGGGHHH--HHHHHHHHHHSCCCCCT----T----THH
T ss_pred CcceEEEECCEEEEeeHHHHhhcCHHHHH-HHCCCCCCeEEeCCCCHHH--HHHHHHHHcCCCCccCH----H----HHH
Confidence 5999999999999999987 6787754 5543 33444433 78889999999876322 1 257
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCcccc
Q 001169 336 DVLLLLERAALEPLPPKDEKGPQNRT 361 (1133)
Q Consensus 336 Dll~~leR~al~~Lp~~d~~~~q~~~ 361 (1133)
+||.+++++.++.|.. .|.+.+.
T Consensus 93 ~ll~~A~~~~i~~L~~---~C~~~l~ 115 (119)
T 3b84_A 93 QVLLAARELRVPEAVE---LCQSFKP 115 (119)
T ss_dssp HHHHHHHHTTCHHHHH---HHHHCC-
T ss_pred HHHHHHHHhCcHHHHH---HHHHHHH
Confidence 8999999998887764 3544443
No 20
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=97.16 E-value=0.00014 Score=69.44 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=57.0
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhc-------c-cccccccccccccccccccCCCCCCceEeecceeeeh
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG-------L-KALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLV 334 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~g-------l-k~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~ 334 (1133)
.+||+|.|.++.|.+||.| +|++|.+ +|.+ | .++.+.. ++.+++++|++.++-.. + -+
T Consensus 33 ~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~-~f~~~~~~~i~l~~~~~~~~--f~~ll~~iYtg~~~i~~-----~---~~ 101 (129)
T 3ga1_A 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRD-LFNNSRSAVVELPAAVQPQS--FQQILSFCYTGRLSMNV-----G---DQ 101 (129)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHBHHHHH-HHHHCCCSEEECCTTCCHHH--HHHHHHHHHHSEEECCT-----T---TH
T ss_pred CcceEEEECCEEEEehHHHHHHcCHHHHH-HHcCCCCCEEEECCCCCHHH--HHHHHHHHhCCccccCH-----H---HH
Confidence 4999999999999999987 6777765 4543 2 1343333 78889999998764221 1 26
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCcccccc
Q 001169 335 DDVLLLLERAALEPLPPKDEKGPQNRTKE 363 (1133)
Q Consensus 335 ~Dll~~leR~al~~Lp~~d~~~~q~~~~~ 363 (1133)
.+||.+++++.++.|.. .|.+.+.+.
T Consensus 102 ~~ll~~A~~~~i~~l~~---~C~~~L~~~ 127 (129)
T 3ga1_A 102 DLLMYTAGFLQIQEIME---KGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHTTBTTSSC---C--------
T ss_pred HHHHHHHHHhCCHHHHH---HHHHHHHHh
Confidence 78999999999999986 687776654
No 21
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=97.08 E-value=6.2e-06 Score=88.15 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=80.4
Q ss_pred cchhhhhhh---hhhhcchhhh---hhhHHHHHHhhccc----------------ccccccccccccccccccCCCCCCc
Q 001169 266 KTDAILKVV---VKHFFIEKEV---TSTLVMDSLYSGLK----------------ALEGQSKSKKTKAKLLDAEDTPPPI 323 (1133)
Q Consensus 266 ~sDVilkV~---~k~Ffa~keV---tSplvmd~Lf~glk----------------~le~~t~~~k~~~~~~~t~e~p~~~ 323 (1133)
.+||+|.|+ ++.|.+||.| +|++|.+-+.++++ .+.+. .++.+++++|++.++
T Consensus 32 ~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~--~f~~ll~~~Ytg~~~--- 106 (279)
T 3i3n_A 32 FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPD--TVEAVIEYMYTGRIR--- 106 (279)
T ss_dssp TCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHH--HHHHHHHHHHHSEEE---
T ss_pred CCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHH--HHHHHHHhhCcCCcc---
Confidence 499999998 9999999987 66766554444443 22222 377778899987753
Q ss_pred eEeecceeeehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhh
Q 001169 324 VHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHI 398 (1133)
Q Consensus 324 ~~v~~d~~~l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~ 398 (1133)
+..+ -+.+||.+++++.++.|.. .|.+.+.+. ++.+++. .+.++|.+|..+|+++.. ++
T Consensus 107 --i~~~---~v~~ll~~A~~l~i~~L~~---~c~~~L~~~------l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~--~~ 170 (279)
T 3i3n_A 107 --VSTG---SVHEVLELADRFLLIRLKE---FCGEFLKKK------LHLSNCVAIHSLAHMYTLSQLALKAADMIR--RN 170 (279)
T ss_dssp --EETT---THHHHHHHHHHTTCHHHHH---HHHHHHHHH------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH--HT
T ss_pred --cCHH---HHHHHHHHHHHHCcHHHHH---HHHHHHHHc------CCcchHHHHHHHHHHcCcHHHHHHHHHHHH--HH
Confidence 2221 3678999999999998875 588877776 4555533 288999999999999875 55
Q ss_pred hh
Q 001169 399 FS 400 (1133)
Q Consensus 399 F~ 400 (1133)
|.
T Consensus 171 f~ 172 (279)
T 3i3n_A 171 FH 172 (279)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 22
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=97.07 E-value=0.00012 Score=68.70 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=53.5
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhccc----------ccccccccccccccccccCCCCCCceEeecceee
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK----------ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFV 332 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk----------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~ 332 (1133)
.+||+|.|.++.|.+||.| +||+|.+-+.++++ ++.+. .++.+++++|++.++... .
T Consensus 25 ~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~--~f~~ll~~~Yt~~~~~~~--------~ 94 (120)
T 2if5_A 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDFAYTATLTVST--------A 94 (120)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHH--HHHHHHHHHHHSCCCCCG--------G
T ss_pred CCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHH--HHHHHHHHHcCCCCccCH--------H
Confidence 4999999999999999987 67877665444432 22222 377788899998876332 1
Q ss_pred ehhhHHHHHHHhhcCCCC
Q 001169 333 LVDDVLLLLERAALEPLP 350 (1133)
Q Consensus 333 l~~Dll~~leR~al~~Lp 350 (1133)
.+.+|+.+++++.++.|.
T Consensus 95 ~~~~ll~~A~~~~i~~L~ 112 (120)
T 2if5_A 95 NVGDILSAARLLEIPAVS 112 (120)
T ss_dssp GHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCHHHH
Confidence 367889999998887764
No 23
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=96.97 E-value=0.00014 Score=67.98 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=54.3
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhc-------cc--ccccccccccccccccccCCCCCCceEeecceeee
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG-------LK--ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVL 333 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~g-------lk--~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l 333 (1133)
.+||+|.|.++.|.+||.| +||+|.+ +|.+ ++ ++.+.. ++.+++++|++.++-.. ..
T Consensus 22 ~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~-~f~~~~~~~i~l~~~~~~~~~--f~~ll~~~Yt~~~~~~~--------~~ 90 (116)
T 2vpk_A 22 LCDCTIVIGEFQFKAHRNVLASFSEYFGA-IYRSTSENNVFLDQSQVKADG--FQKLLEFIYTGTLNLDS--------WN 90 (116)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHH-HHTTCCCSCEECCTTTCCHHH--HHHHHHHHHHSCCCCCT--------TT
T ss_pred CCcEEEEECCEEEeccHHHHhhcCHHHHH-HHcCCCCCeEEeecCCCCHHH--HHHHHHHHcCCCcccCH--------HH
Confidence 4999999999999999987 6787665 5543 33 444433 77888999998876322 13
Q ss_pred hhhHHHHHHHhhcCCCC
Q 001169 334 VDDVLLLLERAALEPLP 350 (1133)
Q Consensus 334 ~~Dll~~leR~al~~Lp 350 (1133)
+.+|+.+++++.++.|.
T Consensus 91 v~~ll~~A~~~~i~~L~ 107 (116)
T 2vpk_A 91 VKEIHQAADYLKVEEVV 107 (116)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCHHHH
Confidence 67888899988887764
No 24
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=96.93 E-value=5.3e-05 Score=71.81 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=53.3
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhccc----------ccccccccccccccccccCCCCCCceEeecceee
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK----------ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFV 332 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk----------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~ 332 (1133)
.+||+|.|.++.|.+||.| +||+|.+-+.++++ ++.+. .++.+++++|++.++... .
T Consensus 29 ~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~--~f~~ll~~~Ytg~~~~~~--------~ 98 (127)
T 1r29_A 29 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPE--GFNILLDFMYTSRLNLRE--------G 98 (127)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHH--HHHHHHHHHHHSCCCCCT--------T
T ss_pred CCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHH--HHHHHHHHHcCCCcCcCH--------H
Confidence 4999999999999999987 67877665554443 22222 367778888888765321 1
Q ss_pred ehhhHHHHHHHhhcCCCCC
Q 001169 333 LVDDVLLLLERAALEPLPP 351 (1133)
Q Consensus 333 l~~Dll~~leR~al~~Lp~ 351 (1133)
.+.+||.+++++.++.|..
T Consensus 99 ~~~~ll~~A~~~~i~~L~~ 117 (127)
T 1r29_A 99 NIMAVMATAMYLQMEHVVD 117 (127)
T ss_dssp THHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHH
Confidence 3577888888887776643
No 25
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=96.84 E-value=6.2e-05 Score=72.72 Aligned_cols=83 Identities=17% Similarity=0.028 Sum_probs=58.7
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhc-------ccccccccccccccccccccCCCCCCceEeecceeeehh
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG-------LKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVD 335 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~g-------lk~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~ 335 (1133)
.+||+|+|.++.|.+||.| +|++|.+ +|.+ |+++.+.. ++.+++++|+..+.... + -+.
T Consensus 25 ~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~-mf~~~~~~~i~l~~~~~~~--f~~lL~fiYtg~~~i~~-----~---~v~ 93 (135)
T 2yy9_A 25 YCDATLDVGGLVFKAHWSVLACCSHFFQR-IYGDGTGGSVVLPAGFAEI--FGLLLDFFYTGHLALTS-----G---NRD 93 (135)
T ss_dssp TCCEEEEETTEEEEECHHHHHHHCHHHHH-TCC----CCEEECGGGHHH--HHHHHHHHHHSCCCCCT-----T---THH
T ss_pred CcceEEEECCEEEehHHHHHHHhCHHHHH-HHcCCCCCeEEeCCCCHHH--HHHHHHHHhCCCCCCCH-----H---HHH
Confidence 4999999999999999987 6777665 5542 33444333 78889999998875322 1 367
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCccccc
Q 001169 336 DVLLLLERAALEPLPPKDEKGPQNRTK 362 (1133)
Q Consensus 336 Dll~~leR~al~~Lp~~d~~~~q~~~~ 362 (1133)
+||.+++++.++.|.. .|.+.+.+
T Consensus 94 ~ll~~A~~l~i~~L~~---~C~~~l~~ 117 (135)
T 2yy9_A 94 QVLLAAKELRVPEAVE---LCQSFQPQ 117 (135)
T ss_dssp HHHHHHHHTTCHHHHH---HHHHCCC-
T ss_pred HHHHHHHHhCcHHHHH---HHHHHHHH
Confidence 8999999998888764 45555444
No 26
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=96.72 E-value=0.00025 Score=66.84 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=53.3
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhc-----ccccccccccccccccccccCCCCCCceEeecceeeehhhH
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG-----LKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDV 337 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~g-----lk~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dl 337 (1133)
.+||+|.|.++.|.+||.| +||+|.+-+.++ +.++.+.. ++.+++++|++.++.+. .-+.+|
T Consensus 28 ~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~--f~~ll~~~Ytg~~~~~~--------~~~~~l 97 (121)
T 1buo_A 28 LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKT--FQQILEYAYTATLQAKA--------EDLDDL 97 (121)
T ss_dssp TCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHH--HHHHHHHHHHSCCCCCG--------GGHHHH
T ss_pred CCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCCCcEEEeCCCCHHH--HHHHHHhhcCCCcCCCH--------HHHHHH
Confidence 4999999999999999977 678766544332 23333333 77788899998876332 135788
Q ss_pred HHHHHHhhcCCCC
Q 001169 338 LLLLERAALEPLP 350 (1133)
Q Consensus 338 l~~leR~al~~Lp 350 (1133)
+.+++++.++.|.
T Consensus 98 l~~A~~~~i~~L~ 110 (121)
T 1buo_A 98 LYAAEILEIEYLE 110 (121)
T ss_dssp HHHHHHHTCHHHH
T ss_pred HHHHHHHCCHHHH
Confidence 8888888777664
No 27
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=96.70 E-value=0.00011 Score=71.78 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=54.7
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhcccc------------cccccccccccccccccCCCCCCceEeecce
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLKA------------LEGQSKSKKTKAKLLDAEDTPPPIVHVENDM 330 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~glk~------------le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~ 330 (1133)
.+||+|.|.++.|.+||.| +|++|.+-+.++++. +.+. .++.+++++|++.++...
T Consensus 47 ~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~--~f~~lL~fiYtg~~~i~~------- 117 (144)
T 2ppi_A 47 FCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVM--VMREILDYIFSGQIRLNE------- 117 (144)
T ss_dssp CCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHH--HHHHHHHHHTTSCCCCCT-------
T ss_pred CcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHH--HHHHHHHHHhCCCCCCCH-------
Confidence 5999999999999999987 678776655554432 2222 367778899998875321
Q ss_pred eeehhhHHHHHHHhhcCCCCC
Q 001169 331 FVLVDDVLLLLERAALEPLPP 351 (1133)
Q Consensus 331 ~~l~~Dll~~leR~al~~Lp~ 351 (1133)
..+.+||.+++++.++.|..
T Consensus 118 -~~v~~ll~~A~~l~i~~L~~ 137 (144)
T 2ppi_A 118 -DTIQDVVQAADLLLLTDLKT 137 (144)
T ss_dssp -TTHHHHHHHHHHTTCHHHHH
T ss_pred -HHHHHHHHHHHHhCcHHHHH
Confidence 13678999999998877753
No 28
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=96.49 E-value=0.00054 Score=64.54 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=51.7
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhcc-----cccccccccccccccccccCCCCCCceEeecceeeehhhH
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGL-----KALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDV 337 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~gl-----k~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dl 337 (1133)
.+||+|.+.++.|.+||.| +|++|.+-+.+.. ..+.+. .++.+++++|++.++-.. + -+.+|
T Consensus 27 ~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~--~f~~ll~~~Ytg~~~i~~-----~---~~~~l 96 (119)
T 2q81_A 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAA--GLGQVLEFMYTAKLSLSP-----E---NVDDV 96 (119)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCCSGGGGGGCCHH--HHHHHHHHHHHSCCCCCT-----T---THHHH
T ss_pred CcceEEEECCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeCCCCHH--HHHHHHHHHcCCCCccCH-----H---HHHHH
Confidence 5999999999999999987 6787665433322 222222 377778899998875222 1 25788
Q ss_pred HHHHHHhhcCCCC
Q 001169 338 LLLLERAALEPLP 350 (1133)
Q Consensus 338 l~~leR~al~~Lp 350 (1133)
|.+++++.++.|.
T Consensus 97 l~~A~~l~i~~L~ 109 (119)
T 2q81_A 97 LAVATFLQMQDII 109 (119)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHH
Confidence 8888888777664
No 29
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=96.45 E-value=0.00052 Score=64.69 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=54.3
Q ss_pred cchhhhhhhhhhhcchhhh---hhhHHHHHHhhc------ccccccccccccccccccccCCCCCCceEeecceeeehhh
Q 001169 266 KTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG------LKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDD 336 (1133)
Q Consensus 266 ~sDVilkV~~k~Ffa~keV---tSplvmd~Lf~g------lk~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~D 336 (1133)
.+||+|.|.++.|.+||.| +|++|.+ +|.+ +.++.+.. ++..++++|++.++... . .-+.+
T Consensus 31 ~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~-~f~~~~~~i~l~~~~~~~--f~~~l~~~Ytg~~~~~~----~---~~~~~ 100 (116)
T 3fkc_A 31 FCDVTVIVEDRKFRAHKNILSASSTYFHQ-LFSVAGQVVELSFIRAEI--FAEILNYIYSSKIVRVR----S---DLLDE 100 (116)
T ss_dssp TCCEEEEETTEEEEECHHHHHHHCHHHHH-HTTSCCSEEEECSSCHHH--HHHHHHHHTTSCCCSCC----H---HHHHH
T ss_pred ceeEEEEECCEEEehhHHHHHHcCHHHHH-HHcCCCCEEEeCCCCHHH--HHHHHHhhcCCCcCCCC----H---HHHHH
Confidence 4999999999999999977 6787655 5543 33444433 78889999999874211 1 13678
Q ss_pred HHHHHHHhhcCCCC
Q 001169 337 VLLLLERAALEPLP 350 (1133)
Q Consensus 337 ll~~leR~al~~Lp 350 (1133)
||.+++++.+..|+
T Consensus 101 ll~~A~~l~i~~L~ 114 (116)
T 3fkc_A 101 LIKSGQLLGVKFIA 114 (116)
T ss_dssp HHHHHHHHTCHHHH
T ss_pred HHHHHHHhCccccC
Confidence 99999999887653
No 30
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=95.73 E-value=0.00087 Score=61.44 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=49.3
Q ss_pred cccchhhhhhhh----hhhcchhhh---hhhHHHHHHhhccc---------ccccccccccccccccccCCCCCCceEee
Q 001169 264 REKTDAILKVVV----KHFFIEKEV---TSTLVMDSLYSGLK---------ALEGQSKSKKTKAKLLDAEDTPPPIVHVE 327 (1133)
Q Consensus 264 ~e~sDVilkV~~----k~Ffa~keV---tSplvmd~Lf~glk---------~le~~t~~~k~~~~~~~t~e~p~~~~~v~ 327 (1133)
+..+||+|.|.+ +.|.+||.| +||+|..-+.++++ ++.+. .++.+++++|++.++.+.
T Consensus 6 ~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~--~f~~~l~~iYt~~~~~~~---- 79 (109)
T 2vkp_A 6 ELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPA--AFLILLKYMYSDEIDLEA---- 79 (109)
T ss_dssp CTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHH--HHHHHHHHHHHCCCCCCT----
T ss_pred CCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHH--HHHHHHHHHcCCCccCCH----
Confidence 456999999999 899999987 77877665555443 22222 266667788887765222
Q ss_pred cceeeehhhHHHHHHHhhcCCCC
Q 001169 328 NDMFVLVDDVLLLLERAALEPLP 350 (1133)
Q Consensus 328 ~d~~~l~~Dll~~leR~al~~Lp 350 (1133)
..+.+|+.+++++.++.|.
T Consensus 80 ----~~~~~ll~~A~~~~~~~L~ 98 (109)
T 2vkp_A 80 ----DTVLATLYAAKKYIVPALA 98 (109)
T ss_dssp ----TTHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHHHHHHHhCcHHHH
Confidence 1245677777777665553
No 31
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=95.07 E-value=0.00022 Score=67.96 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=54.7
Q ss_pred cccchhhhhhhhhhhcchhhh---hhhHHHHH-HhhcccccccccccccccccccccCCCCCCceEeecceeeehhhHHH
Q 001169 264 REKTDAILKVVVKHFFIEKEV---TSTLVMDS-LYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLL 339 (1133)
Q Consensus 264 ~e~sDVilkV~~k~Ffa~keV---tSplvmd~-Lf~glk~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~ 339 (1133)
+..+||+|.|.++.|.+||.| +|++|... -...++++.+.. ++.++.++||.++. +..+ -+.+||.
T Consensus 28 ~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~~~~i~l~~v~~~~--f~~ll~fiYtg~~~-----i~~~---~v~~ll~ 97 (119)
T 3m5b_A 28 PALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWALGEGISPST--FAQLLNFVYGESVE-----LQPG---ELRPLQE 97 (119)
T ss_dssp TTTCCEEEEETTEEEEECHHHHHTTCGGGCCCEEEECCSSCCHHH--HHHHHHHHTTCCEE-----ECGG---GHHHHHH
T ss_pred CCCcceEEEECCEEEeeEHHHHHHcCHHHhcCCCEEEeCCCCHHH--HHHHHHHHcCCCcC-----cCHH---HHHHHHH
Confidence 456999999999999999977 66765320 012334444444 88889999998753 2111 3678999
Q ss_pred HHHHhhcCCCCC
Q 001169 340 LLERAALEPLPP 351 (1133)
Q Consensus 340 ~leR~al~~Lp~ 351 (1133)
+++++.+..|..
T Consensus 98 aA~~l~i~~l~~ 109 (119)
T 3m5b_A 98 AARALGVQSLEE 109 (119)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHhCCHHHHH
Confidence 999998887753
No 32
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=68.69 E-value=1.1 Score=48.23 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=31.5
Q ss_pred cceeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 208 RRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 208 ~ketV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
+...+.||+.|+|.|| +|+.+||...+...||.+++..
T Consensus 4 k~~~g~~GL~N~GNtC---------Y~NsvLQ~L~~~~~~r~~~l~~ 41 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTC---------FMNSILQCLSNTRELRDYCLQR 41 (348)
T ss_dssp --CCSCCEECCCSSCH---------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCccH---------HHHHHHHHHhcCHHHHHHHhcc
Confidence 3457889999999999 9999999999888898876543
No 33
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=67.28 E-value=11 Score=43.83 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.3
Q ss_pred hhhHHHHH
Q 001169 386 GRRTVEIF 393 (1133)
Q Consensus 386 grr~~~if 393 (1133)
-..++++|
T Consensus 346 ~~~l~~yF 353 (457)
T 3obv_E 346 YKELGDYF 353 (457)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 33444444
No 34
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=64.92 E-value=1.3 Score=47.65 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.6
Q ss_pred eeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 211 LVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 211 tV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
++.||+.|+|.|| ||+.+||...+...||.|++..
T Consensus 1 TG~~GL~N~GNtC---------Y~NSvLQ~L~~~~~~~~~~l~~ 35 (355)
T 3i3t_A 1 SGHVGLRNLGNTC---------FLNAVLQCLSSTRPLRDFCLRR 35 (355)
T ss_dssp --CCCBCCCSSTH---------HHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCcCcEECCcch---------HHHHHHHHHhCCHHHHHHHHhc
Confidence 4689999999999 9999999999888898876653
No 35
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=62.77 E-value=5 Score=48.00 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=8.4
Q ss_pred HHHhhHHhhhHHHHHH
Q 001169 379 ERRLTELGRRTVEIFV 394 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa 394 (1133)
|+.+.|+-+||.++--
T Consensus 334 ~~~~~~~~~~~~~~~~ 349 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQE 349 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3344555556655544
No 36
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=60.47 E-value=1.8 Score=47.71 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=31.3
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
.++.+|+.|+|.|| ||+.+||...+...||.+++..
T Consensus 3 ~~g~~GL~NlGnTC---------YmNSvLQ~L~~~~~~r~~~~~~ 38 (353)
T 1nb8_A 3 HTGYVGLKNQGATC---------YMNSLLQTLFFTNQLRKAVYMM 38 (353)
T ss_dssp CSSCCCBCCCSTTT---------THHHHHHHHHTCHHHHHHHHTS
T ss_pred CCCCCCcccCchhh---------HHHHHHHHHHCCHHHHHHHHhC
Confidence 46789999999999 9999999999888888876544
No 37
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=57.28 E-value=1.8 Score=47.84 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=31.9
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
..+.||+.|+|.|| ||+.+||...+...||.+++...
T Consensus 11 ~~~~~GL~NlGNTC---------YmNSvLQ~L~~~~~~~~~l~~~~ 47 (404)
T 2ayn_A 11 MELPCGLTNLGNTC---------YMNATVQCIRSVPELKDALKRYA 47 (404)
T ss_dssp CCCCCEECCCSSCH---------HHHHHHHHHHTCHHHHHHHHTCC
T ss_pred cCCCCCcccCCccc---------HHHHHHHHHHcCHHHHHHHHhcc
Confidence 35679999999999 99999999999888988876543
No 38
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=48.34 E-value=51 Score=28.74 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=12.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Q 001169 430 ESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKK 464 (1133)
Q Consensus 430 ~~e~~~kk~~k~keKk~~~k~ak~~e~~rk~~e~~ 464 (1133)
+++|++|-++-|.|+.+-.+....+=.-+|.++++
T Consensus 25 Ee~Rk~Kh~kME~ERE~mRQ~IRdKY~ikKkee~e 59 (63)
T 3rk3_E 25 EEERKAKYAKMEAEREAVRQGIRDKYGIKKKEERE 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 34455555543444333334444444444444433
No 39
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=47.88 E-value=3.6 Score=46.03 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=33.4
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCH
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQ 256 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~ 256 (1133)
..+.||+.|+|.|| ||+.+||...+...||.+++....
T Consensus 21 ~~~~~GL~NlGNTC---------YmNSvLQ~L~~~p~fr~~ll~~~~ 58 (415)
T 1vjv_A 21 AQLPVGFKNMGNTC---------YLNATLQALYRVNDLRDMILNYNP 58 (415)
T ss_dssp CCCCCEECCCSSCH---------HHHHHHHHHHHSHHHHHHHHTCCG
T ss_pred CCCCCCCEeCCccc---------HHHHHHHHHHcCHHHHHHHHhccc
Confidence 45789999999999 999999999999999998876654
No 40
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=46.29 E-value=15 Score=38.73 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001169 416 QEELIREEEA 425 (1133)
Q Consensus 416 Q~~Ll~E~E~ 425 (1133)
|++.|+|+.+
T Consensus 109 q~kRLeekDa 118 (205)
T 3lvh_D 109 QRKRLQELDA 118 (205)
T ss_dssp HTTTSTHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 41
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=46.13 E-value=1.1e+02 Score=38.41 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=31.8
Q ss_pred cccchhHH-HHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001169 370 FNKDSIER-DERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKK 445 (1133)
Q Consensus 370 vs~dtve~-ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk 445 (1133)
|++-+||+ |.+-+.- =.|-+++.+ +...+--.|.-+|+....|.|+..+++.+|=.-+.+.|+.||
T Consensus 638 VDvqsvEpvDqrtrd~-LqkSVqlAi---------EItT~sqEa~Ar~~A~~~eQea~g~Lerqki~d~a~aE~~r~ 704 (861)
T 2zuo_A 638 VDVQSVEPVDQRTRDA-LQRSVQLAI---------EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704 (861)
T ss_dssp EEEEEEEESSHHHHHH-HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeeecccCHHHHHH-HHHHHHHHH---------HHHhHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44556776 5444332 234444433 444444445555555555555555555554444444333333
No 42
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.75 E-value=17 Score=43.52 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=6.9
Q ss_pred eechhhhccCc
Q 001169 659 VSSLQHQAKLP 669 (1133)
Q Consensus 659 ~~~~~~~~~~~ 669 (1133)
--+||+||+.|
T Consensus 513 n~~lq~qL~~L 523 (575)
T 2i1j_A 513 NERLHNQLKAL 523 (575)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44677777655
No 43
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=42.25 E-value=19 Score=37.15 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 001169 416 QEELIREE 423 (1133)
Q Consensus 416 Q~~Ll~E~ 423 (1133)
|++.|+|.
T Consensus 94 QkkRLEeR 101 (190)
T 3lvg_D 94 QRKRLQEL 101 (190)
T ss_dssp HTTTSTHH
T ss_pred HHHHHHHH
Confidence 33334443
No 44
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=42.01 E-value=4.1 Score=44.73 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=30.8
Q ss_pred eeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 211 LVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 211 tV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
.+.+|+.|+|.|| ||+.+||...+...||.+++..
T Consensus 6 ~g~~GL~NlGNTC---------YmNSvLQ~L~~~~~~~~~~~~~ 40 (367)
T 2y6e_A 6 PGLCGLGNLGNTC---------FMNSALQCLSNTAPLTDYFLKD 40 (367)
T ss_dssp TTCCEECCCSSCH---------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCcCCccCCcch---------HHHHHHHHHHCCHHHHHHHHcC
Confidence 5678999999999 9999999999888898876654
No 45
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=41.32 E-value=1.8e+02 Score=27.80 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001169 402 KIEVAYQEAVALKRQEELIREEEAAWLA 429 (1133)
Q Consensus 402 ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 429 (1133)
++...+...+....+.--..+.+.+...
T Consensus 74 ~fi~~L~~~I~~q~~~l~~~~~~~e~~r 101 (150)
T 3ajw_A 74 QFIQTLEKAIEQHRLQLTQWTQKVDLAL 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444333333333333
No 46
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=39.49 E-value=7.9 Score=48.36 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=30.7
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhc
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLG 253 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a 253 (1133)
..+.|++.|+|.|| ||+.+||...+...||.+++.
T Consensus 341 ~~G~~GL~NlGNTC---------YmNSvLQ~L~~~p~fr~~ll~ 375 (854)
T 3ihp_A 341 GPGYTGIRNLGNSC---------YLNSVVQVLFSIPDFQRKYVD 375 (854)
T ss_dssp STTCCCBCCCSSCH---------HHHHHHHHHTTSHHHHHHHTT
T ss_pred CCCccceEecCCce---------ehhHHHHHHhCcHHHHHHHHh
Confidence 35789999999999 999999999998889887653
No 47
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=39.31 E-value=58 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhh
Q 001169 441 EKEKKAKKKLAKQKRNNRKGKEKKREERSSMAL 473 (1133)
Q Consensus 441 ~keKk~~~k~ak~~e~~rk~~e~~~ee~~~~~~ 473 (1133)
.+.|-++.||||++-.+.-++=+...|+.=++.
T Consensus 30 Rk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~ 62 (119)
T 4efa_G 30 RKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEF 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666665555444444444443333
No 48
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=39.25 E-value=47 Score=38.74 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCCCccccC
Q 001169 514 VDGGAEVLQ 522 (1133)
Q Consensus 514 ~d~~~e~~~ 522 (1133)
+|+..+.|+
T Consensus 438 ~D~Ll~~Lr 446 (483)
T 2j1d_G 438 FDDLVSALR 446 (483)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 344444444
No 49
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=37.54 E-value=90 Score=34.00 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 001169 412 ALKRQEELIREEE 424 (1133)
Q Consensus 412 A~~rQ~~Ll~E~E 424 (1133)
..+.|++|.++|-
T Consensus 17 ~~~~~~~~~~~~~ 29 (323)
T 1ij5_A 17 VHENLEELQKKLD 29 (323)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554443
No 50
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=37.26 E-value=5.2 Score=44.84 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=31.0
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
..+.+|+.|+|.|| ||+.+||...+...||.++...
T Consensus 59 ~~g~~GL~NlGNTC---------YmNSvLQ~L~~~p~~~~~~l~~ 94 (396)
T 2gfo_A 59 GPALTGLRNLGNTC---------YMNSILQCLCNAPHLADYFNRN 94 (396)
T ss_dssp STTCCEECCSSSCH---------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCcccccccCCch---------hHhHHHHHhhCCHHHHHHHHcC
Confidence 35689999999999 9999999999888888876543
No 51
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=34.47 E-value=2.5e+02 Score=32.51 Aligned_cols=7 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCCCCc
Q 001169 892 PNSVQSA 898 (1133)
Q Consensus 892 ~~s~~~g 898 (1133)
.++.+.|
T Consensus 444 eLsf~~G 450 (486)
T 3haj_A 444 ELSFKAG 450 (486)
T ss_dssp -------
T ss_pred cCccCCC
Confidence 3444444
No 52
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=33.17 E-value=9.1 Score=43.65 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=30.4
Q ss_pred eeeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhc
Q 001169 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLG 253 (1133)
Q Consensus 210 etV~VPpsNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a 253 (1133)
..+.+|+.|+|.|| +|+.+||...+...||.+++.
T Consensus 138 ~~G~~GL~NlGNTC---------YmNSvLQ~L~~~p~fr~~~l~ 172 (476)
T 3mhs_A 138 RDGLSGLINMGSTC---------FMSSILQCLIHNPYFIRHSMS 172 (476)
T ss_dssp TTCCCCCCCSSSTH---------HHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCCCCCCcCCccH---------HHHHHHHHHhCCHHHHHHHHh
Confidence 46789999999999 999999999988888876654
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=30.44 E-value=17 Score=46.59 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=8.1
Q ss_pred CCCCCCcccccccc
Q 001169 832 THGYIPQSYRNVKM 845 (1133)
Q Consensus 832 ~~sy~pqsYrNAi~ 845 (1133)
-|+-.++..|..|+
T Consensus 510 ~Hg~l~~~~R~~v~ 523 (1108)
T 3l9o_A 510 HHSGLLPILKEVIE 523 (1108)
T ss_dssp ECSCSCHHHHHHHH
T ss_pred ecCCCCHHHHHHHH
Confidence 35556666666554
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.39 E-value=3.4e+02 Score=30.74 Aligned_cols=21 Identities=19% Similarity=-0.091 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001169 407 YQEAVALKRQEELIREEEAAW 427 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~E~e~ 427 (1133)
..++.+...+..|.+.|.+.+
T Consensus 390 ~~~~e~~~~~~~~~~~~~~~~ 410 (471)
T 3mq9_A 390 RAVMEARNVTHLLQQELTEAQ 410 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 444555566666666665533
No 55
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.20 E-value=19 Score=46.18 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=4.2
Q ss_pred cccccCCCC
Q 001169 1013 NRQFSFPRD 1021 (1133)
Q Consensus 1013 ~~~fs~~g~ 1021 (1133)
.++|--||.
T Consensus 705 ~~~~l~~G~ 713 (1108)
T 3l9o_A 705 ALSFLQPGR 713 (1108)
T ss_dssp HHHHCCTTE
T ss_pred HHhhCCCCC
Confidence 344444554
No 56
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.86 E-value=4.9e+02 Score=27.44 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001169 417 EELIREEEAAWLAESEQKAK 436 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~e~~~k 436 (1133)
.+|+.++|+=-..+++.+..
T Consensus 156 ~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 156 NDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777655555544433
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.52 E-value=71 Score=36.47 Aligned_cols=110 Identities=6% Similarity=0.005 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------------HHHHHHH
Q 001169 387 RRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKA-------------KKKLAKQ 453 (1133)
Q Consensus 387 rr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~keKk~-------------~~k~ak~ 453 (1133)
|.++.+.+.-.--..++...-++++.+...++-+++.-.+.+++.+...++..+...+-. ..+.+|+
T Consensus 339 rNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 418 (487)
T 3oja_A 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKR 418 (487)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHH
T ss_pred cchhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHH
Q ss_pred HHhhhhhhhHHHHHHhhhhhhhhhcccCCchhhhhhhhcccCCC
Q 001169 454 KRNNRKGKEKKREERSSMALSDRLEDENPSDEKKEFIVEDAQPL 497 (1133)
Q Consensus 454 ~e~~rk~~e~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1133)
.|.-.++.|++++. .++..+..+.+++.-++++.+-+++++++
T Consensus 419 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 419 YEEMYVEQQSVQNN-AIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-chhhhhhhhhHHHHHHHHhhhhhhhhhhh
No 58
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.46 E-value=4.1e+02 Score=38.40 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=7.0
Q ss_pred CccCCCccccc
Q 001169 557 SSVPNGVTEKR 567 (1133)
Q Consensus 557 ~~~~n~~~~k~ 567 (1133)
-++.||+-.++
T Consensus 2172 lSiENaiiv~~ 2182 (3245)
T 3vkg_A 2172 LCIENAIMLKR 2182 (3245)
T ss_dssp HHHHHHHHTTS
T ss_pred hhhhHHHHHhc
Confidence 45677776655
No 59
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=23.23 E-value=1.7e+02 Score=27.22 Aligned_cols=7 Identities=57% Similarity=0.767 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 001169 412 ALKRQEE 418 (1133)
Q Consensus 412 A~~rQ~~ 418 (1133)
...||+.
T Consensus 42 vv~RQEA 48 (89)
T 2q2f_A 42 VVKRQEA 48 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=23.04 E-value=15 Score=46.60 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 001169 338 LLLLERA 344 (1133)
Q Consensus 338 l~~leR~ 344 (1133)
+.+|+++
T Consensus 649 id~L~~L 655 (963)
T 4ady_A 649 IDVLDPL 655 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 61
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.66 E-value=1.4e+02 Score=36.06 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 001169 402 KIEVAYQE 409 (1133)
Q Consensus 402 ri~~Ay~E 409 (1133)
+|+..|.+
T Consensus 442 ~~~~~Y~~ 449 (592)
T 1f5n_A 442 DLKKKYYE 449 (592)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444543
No 62
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.60 E-value=20 Score=48.33 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.8
Q ss_pred hhcccccccc
Q 001169 294 YSGLKALEGQ 303 (1133)
Q Consensus 294 f~glk~le~~ 303 (1133)
+.|++.+|..
T Consensus 770 ~~Gqq~~~Gk 779 (1752)
T 3h0g_A 770 CVGQQIVEGK 779 (1752)
T ss_dssp CCCCCCSTTS
T ss_pred ccCCCccCCc
Confidence 5566666544
No 63
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=21.43 E-value=85 Score=36.60 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=8.7
Q ss_pred eeeehhhHHHHHHHh
Q 001169 330 MFVLVDDVLLLLERA 344 (1133)
Q Consensus 330 ~~~l~~Dll~~leR~ 344 (1133)
..+|.+.|...+++-
T Consensus 258 k~TLLhylv~~v~~~ 272 (483)
T 2j1d_G 258 NITLLHYLITIVENK 272 (483)
T ss_dssp TCBHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHh
Confidence 355666666665553
No 64
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.16 E-value=3.6e+02 Score=34.89 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHhhHHHHHhhhcc
Q 001169 230 RRGKLGRLIEDKAR 243 (1133)
Q Consensus 230 ~~~hLG~LLqS~~~ 243 (1133)
.+..|..|+.+...
T Consensus 662 f~~~l~~L~~~l~~ 675 (1184)
T 1i84_S 662 YKEQLTKLMTTLRN 675 (1184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 35567777766553
No 65
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.61 E-value=5.9e+02 Score=36.88 Aligned_cols=8 Identities=25% Similarity=0.044 Sum_probs=3.7
Q ss_pred EEEcCccc
Q 001169 72 WRIEKFSQ 79 (1133)
Q Consensus 72 WKIdNFS~ 79 (1133)
+..-|||.
T Consensus 1333 ~~~infS~ 1340 (3245)
T 3vkg_A 1333 VVSLNFSS 1340 (3245)
T ss_dssp EEEECCCT
T ss_pred eEEEEeeC
Confidence 33445554
No 66
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=20.61 E-value=5.5e+02 Score=24.32 Aligned_cols=12 Identities=0% Similarity=0.124 Sum_probs=4.5
Q ss_pred HHHhhhHHHHHH
Q 001169 434 KAKRGAAEKEKK 445 (1133)
Q Consensus 434 ~~kk~~k~keKk 445 (1133)
+.|.-++-+||+
T Consensus 110 ~~k~~e~L~er~ 121 (150)
T 3ajw_A 110 RLQAWQTLQDRQ 121 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
Done!