Query 001171
Match_columns 1133
No_of_seqs 1060 out of 6861
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.8E-94 2E-98 910.9 47.2 708 25-748 7-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.5E-75 8.5E-80 740.1 38.1 627 76-713 79-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-63 6.5E-68 625.9 47.8 602 61-717 4-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8E-62 2.7E-66 611.1 42.6 566 148-719 9-604 (680)
5 3t6q_A CD180 antigen; protein- 100.0 6.9E-59 2.4E-63 576.4 38.6 534 148-718 17-566 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-57 9.8E-62 580.5 45.8 526 148-718 9-566 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3E-57 1E-61 561.7 37.3 535 148-718 16-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.3E-56 4.5E-61 556.0 41.3 520 96-692 34-564 (606)
9 4eco_A Uncharacterized protein 100.0 2.7E-58 9.3E-63 570.3 25.6 494 26-568 26-600 (636)
10 4ecn_A Leucine-rich repeat pro 100.0 2.4E-57 8.2E-62 569.1 29.2 498 25-592 264-864 (876)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-55 8.4E-60 544.6 36.9 512 95-665 32-559 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-54 4.5E-59 555.9 39.7 510 168-720 7-547 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.6E-51 5.4E-56 506.8 32.6 513 148-718 12-537 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 7.7E-50 2.6E-54 491.7 32.1 494 95-620 28-535 (570)
15 4eco_A Uncharacterized protein 100.0 1.1E-50 3.6E-55 502.4 24.4 460 95-615 81-599 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-49 6.6E-54 485.7 32.4 491 60-668 3-514 (549)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-49 1.1E-53 483.8 29.3 489 168-717 8-515 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-48 1.8E-52 482.1 38.7 521 159-718 46-586 (635)
19 4aoj_A High affinity nerve gro 100.0 7.5E-50 2.6E-54 448.4 19.8 264 836-1118 40-321 (329)
20 4gt4_A Tyrosine-protein kinase 100.0 1.2E-49 4.1E-54 442.4 19.6 259 837-1114 26-304 (308)
21 4asz_A BDNF/NT-3 growth factor 100.0 5.4E-50 1.8E-54 443.2 16.4 262 836-1116 12-289 (299)
22 4ecn_A Leucine-rich repeat pro 100.0 1.1E-48 3.7E-53 490.8 28.1 496 95-664 323-864 (876)
23 3omv_A RAF proto-oncogene seri 100.0 7.6E-49 2.6E-53 433.6 23.2 260 836-1116 35-300 (307)
24 4fih_A Serine/threonine-protei 100.0 1.4E-48 4.9E-53 436.4 18.8 249 837-1110 74-324 (346)
25 4b9d_A Serine/threonine-protei 100.0 1.2E-48 4.1E-53 437.8 16.9 251 836-1110 23-277 (350)
26 4g3f_A NF-kappa-beta-inducing 100.0 1.7E-48 5.8E-53 434.7 17.1 255 836-1115 57-315 (336)
27 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.6E-48 5.5E-53 429.4 15.5 247 837-1108 32-283 (311)
28 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-48 2E-52 468.9 21.5 459 192-717 3-486 (520)
29 3fpq_A Serine/threonine-protei 100.0 8.7E-48 3E-52 422.0 19.6 244 840-1110 29-283 (290)
30 4ase_A Vascular endothelial gr 100.0 2.6E-48 8.8E-53 439.3 15.3 268 831-1116 58-347 (353)
31 2z7x_B TOLL-like receptor 1, v 100.0 5E-47 1.7E-51 460.7 26.2 454 146-666 3-483 (520)
32 3hyh_A Carbon catabolite-derep 100.0 1.5E-47 5.2E-52 416.2 19.2 245 837-1110 13-263 (275)
33 4fie_A Serine/threonine-protei 100.0 1.9E-47 6.6E-52 437.8 18.9 250 836-1110 150-401 (423)
34 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-45 4.9E-50 460.0 35.5 514 95-640 52-580 (635)
35 3hmm_A TGF-beta receptor type- 100.0 3E-47 1E-51 424.7 16.8 268 837-1118 3-299 (303)
36 3ubd_A Ribosomal protein S6 ki 100.0 1.3E-47 4.5E-52 422.5 12.8 246 837-1109 24-281 (304)
37 4g31_A Eukaryotic translation 100.0 1.1E-45 3.9E-50 409.5 15.1 252 837-1110 5-280 (299)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-44 8.5E-49 440.7 25.5 461 74-572 34-514 (562)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-43 4.1E-48 434.6 28.8 457 144-667 32-513 (562)
40 4b99_A Mitogen-activated prote 100.0 1.1E-43 3.6E-48 408.9 20.9 268 837-1110 54-345 (398)
41 1jl5_A Outer protein YOPM; leu 100.0 1.7E-42 5.7E-47 410.0 28.8 428 90-625 6-438 (454)
42 4f9c_A Cell division cycle 7-r 100.0 2.3E-43 7.8E-48 402.0 17.6 201 835-1045 19-251 (361)
43 1jl5_A Outer protein YOPM; leu 100.0 3.7E-42 1.3E-46 407.0 26.4 420 188-717 10-434 (454)
44 3v47_A TOLL-like receptor 5B a 100.0 6.8E-42 2.3E-46 408.3 27.3 384 316-717 11-413 (455)
45 3v47_A TOLL-like receptor 5B a 100.0 1E-41 3.4E-46 406.9 27.4 388 60-500 7-412 (455)
46 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-42 9.2E-47 388.8 20.9 291 26-374 2-302 (313)
47 3v5w_A G-protein coupled recep 100.0 3.6E-42 1.2E-46 410.8 19.0 247 837-1109 189-449 (689)
48 3uto_A Twitchin; kinase, muscl 100.0 8.1E-42 2.8E-46 413.1 17.2 252 836-1110 156-411 (573)
49 3p86_A Serine/threonine-protei 100.0 1.5E-40 5.2E-45 373.9 16.9 263 835-1120 35-302 (309)
50 3kul_A Ephrin type-A receptor 100.0 1.9E-40 6.6E-45 376.2 15.8 268 836-1125 48-322 (325)
51 3uim_A Brassinosteroid insensi 100.0 9.7E-40 3.3E-44 371.3 19.2 285 826-1118 19-313 (326)
52 4hcu_A Tyrosine-protein kinase 100.0 6.9E-40 2.4E-44 361.6 17.2 257 836-1116 9-266 (269)
53 3fe3_A MAP/microtubule affinit 100.0 3E-39 1E-43 365.8 22.2 247 836-1110 14-265 (328)
54 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.9E-39 6.5E-44 357.9 19.8 258 836-1117 7-265 (268)
55 2psq_A Fibroblast growth facto 100.0 2.2E-39 7.4E-44 374.0 21.1 261 836-1115 80-363 (370)
56 3zgw_A Maternal embryonic leuc 100.0 1.6E-39 5.3E-44 370.1 18.7 250 835-1110 8-261 (347)
57 2qkw_B Protein kinase; three-h 100.0 3.4E-39 1.2E-43 365.9 21.2 277 833-1116 35-315 (321)
58 3fxz_A Serine/threonine-protei 100.0 4.1E-39 1.4E-43 360.4 20.9 250 836-1110 19-270 (297)
59 2qol_A Ephrin receptor; recept 100.0 7.6E-40 2.6E-44 378.0 15.4 262 836-1119 44-312 (373)
60 1qcf_A Haematopoetic cell kina 100.0 2.5E-39 8.5E-44 384.3 19.9 262 835-1120 186-448 (454)
61 3soc_A Activin receptor type-2 100.0 5.1E-40 1.7E-44 372.5 12.9 266 836-1116 23-318 (322)
62 2yab_A Death-associated protei 100.0 5.9E-39 2E-43 367.7 21.2 250 836-1110 11-273 (361)
63 1o6l_A RAC-beta serine/threoni 100.0 9E-39 3.1E-43 362.8 21.9 247 837-1110 5-261 (337)
64 1tki_A Titin; serine kinase, m 100.0 2.5E-39 8.4E-44 366.0 17.2 252 836-1111 4-259 (321)
65 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-38 1.2E-42 373.4 27.7 131 558-722 267-397 (457)
66 3gen_A Tyrosine-protein kinase 100.0 5.2E-39 1.8E-43 357.4 18.5 257 836-1116 23-280 (283)
67 3l9p_A Anaplastic lymphoma kin 100.0 1.4E-39 4.8E-44 375.3 14.3 273 836-1127 70-356 (367)
68 3bz5_A Internalin-J, INLJ; leu 100.0 9.4E-38 3.2E-42 369.6 30.1 350 287-696 39-395 (457)
69 3s95_A LIMK-1, LIM domain kina 100.0 5.9E-39 2E-43 362.0 17.5 260 836-1117 9-283 (310)
70 3vhe_A Vascular endothelial gr 100.0 2.4E-39 8.2E-44 373.5 14.1 270 829-1115 14-354 (359)
71 4eqm_A Protein kinase; transfe 100.0 3.3E-38 1.1E-42 352.6 22.4 268 836-1124 10-283 (294)
72 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1E-38 3.5E-43 378.5 19.3 263 835-1121 182-445 (452)
73 2c30_A Serine/threonine-protei 100.0 3.4E-38 1.2E-42 357.0 22.3 261 825-1110 23-295 (321)
74 1o6v_A Internalin A; bacterial 100.0 2.4E-37 8.4E-42 369.3 30.5 344 315-713 46-389 (466)
75 2y0a_A Death-associated protei 100.0 3.1E-38 1.1E-42 358.2 21.4 250 836-1110 10-272 (326)
76 3niz_A Rhodanese family protei 100.0 6.8E-38 2.3E-42 353.0 24.0 264 836-1110 20-301 (311)
77 1opk_A P150, C-ABL, proto-onco 100.0 1.5E-38 5E-43 381.2 19.2 259 836-1117 219-479 (495)
78 3txo_A PKC-L, NPKC-ETA, protei 100.0 8.1E-39 2.8E-43 365.7 16.2 248 835-1109 21-280 (353)
79 2bdw_A Hypothetical protein K1 100.0 2.5E-38 8.4E-43 363.8 20.3 252 835-1110 27-285 (362)
80 3cbl_A C-FES, proto-oncogene t 100.0 4.3E-39 1.5E-43 373.0 14.0 257 836-1115 113-373 (377)
81 3soa_A Calcium/calmodulin-depe 100.0 2.6E-38 8.7E-43 372.0 20.8 253 835-1110 9-268 (444)
82 3t9t_A Tyrosine-protein kinase 100.0 1.3E-38 4.4E-43 351.0 17.1 257 836-1116 7-264 (267)
83 1o6v_A Internalin A; bacterial 100.0 3.6E-37 1.2E-41 367.9 30.9 323 314-665 67-389 (466)
84 3lb7_A RAF proto-oncogene seri 100.0 8.2E-38 2.8E-42 351.5 23.8 262 836-1118 35-302 (307)
85 4euu_A Serine/threonine-protei 100.0 6E-38 2.1E-42 355.2 22.7 276 836-1117 8-310 (319)
86 3tt0_A Basic fibroblast growth 100.0 2.4E-38 8.3E-43 367.5 19.9 268 835-1121 67-357 (382)
87 1k9a_A Carboxyl-terminal SRC k 100.0 2E-38 6.8E-43 375.8 19.6 253 836-1116 192-445 (450)
88 1xjd_A Protein kinase C, theta 100.0 1.6E-38 5.4E-43 361.8 17.6 247 835-1108 15-268 (345)
89 1qpc_A LCK kinase; alpha beta 100.0 9.7E-39 3.3E-43 354.5 15.2 263 836-1122 12-275 (279)
90 3poz_A Epidermal growth factor 100.0 1.8E-38 6.3E-43 360.5 17.5 258 836-1117 14-279 (327)
91 3uc3_A Serine/threonine-protei 100.0 4E-38 1.4E-42 362.1 20.5 253 836-1110 19-275 (361)
92 3c0i_A Peripheral plasma membr 100.0 3.8E-38 1.3E-42 361.3 20.0 254 836-1110 23-287 (351)
93 1ob3_A PFPK5, cell division co 100.0 4.4E-38 1.5E-42 350.8 19.8 263 837-1110 2-281 (288)
94 1fot_A TPK1 delta, CAMP-depend 100.0 4.9E-38 1.7E-42 354.2 20.1 245 836-1110 5-259 (318)
95 3lxl_A Tyrosine-protein kinase 100.0 1.4E-38 4.8E-43 361.8 15.8 273 836-1125 22-312 (327)
96 4aw2_A Serine/threonine-protei 100.0 1.2E-38 4.1E-43 373.2 15.6 257 834-1110 71-339 (437)
97 3kex_A Receptor tyrosine-prote 100.0 1.8E-38 6E-43 360.5 16.5 258 836-1117 12-277 (325)
98 1luf_A Muscle-specific tyrosin 100.0 3.2E-38 1.1E-42 361.6 18.8 266 835-1119 45-338 (343)
99 3dtc_A Mitogen-activated prote 100.0 2.1E-38 7.2E-43 350.1 16.7 250 836-1114 6-271 (271)
100 2nru_A Interleukin-1 receptor- 100.0 1.7E-37 5.9E-42 349.5 24.4 281 825-1116 13-306 (307)
101 3kmu_A ILK, integrin-linked ki 100.0 4.4E-38 1.5E-42 347.5 18.9 253 836-1116 9-270 (271)
102 3v8s_A RHO-associated protein 100.0 1.5E-38 5E-43 369.6 15.7 253 835-1110 67-330 (410)
103 3ugc_A Tyrosine-protein kinase 100.0 1.1E-38 3.8E-43 357.0 14.0 264 836-1116 9-291 (295)
104 1rdq_E PKA C-alpha, CAMP-depen 100.0 4.9E-38 1.7E-42 359.0 19.0 244 837-1110 41-294 (350)
105 2id5_A Lingo-1, leucine rich r 100.0 2E-37 6.9E-42 371.8 24.9 320 366-688 14-333 (477)
106 4f0f_A Serine/threonine-protei 100.0 1.1E-37 3.9E-42 347.4 21.0 252 836-1114 18-287 (287)
107 4dc2_A Protein kinase C IOTA t 100.0 9.3E-38 3.2E-42 360.8 20.9 251 836-1109 51-318 (396)
108 2i0e_A Protein kinase C-beta I 100.0 8.5E-38 2.9E-42 356.9 20.3 249 835-1110 18-277 (353)
109 2zv2_A Calcium/calmodulin-depe 100.0 3.4E-38 1.2E-42 353.6 16.5 250 836-1110 12-293 (298)
110 1u59_A Tyrosine-protein kinase 100.0 2.3E-38 7.8E-43 353.0 14.8 268 837-1127 9-283 (287)
111 3ork_A Serine/threonine protei 100.0 2.3E-38 8E-43 357.1 15.0 260 836-1115 11-280 (311)
112 3a62_A Ribosomal protein S6 ki 100.0 8.9E-38 3E-42 354.6 19.7 248 836-1110 16-277 (327)
113 2izr_A Casein kinase I isoform 100.0 5.7E-38 1.9E-42 357.2 18.0 261 836-1116 8-281 (330)
114 2vd5_A DMPK protein; serine/th 100.0 2.7E-38 9.2E-43 367.6 15.2 256 834-1110 58-328 (412)
115 3oz6_A Mitogen-activated prote 100.0 1.2E-37 4.3E-42 362.7 20.8 280 835-1121 7-342 (388)
116 2h8h_A Proto-oncogene tyrosine 100.0 4.6E-38 1.6E-42 380.4 17.4 263 835-1121 265-528 (535)
117 4fr4_A YANK1, serine/threonine 100.0 1.1E-37 3.8E-42 358.9 19.8 249 836-1109 14-271 (384)
118 2pmi_A Negative RE, cyclin-dep 100.0 1.9E-37 6.5E-42 350.5 21.3 270 836-1110 4-294 (317)
119 3tki_A Serine/threonine-protei 100.0 3E-38 1E-42 357.6 14.7 254 836-1111 6-263 (323)
120 1mqb_A Ephrin type-A receptor 100.0 5.2E-38 1.8E-42 357.6 16.8 263 836-1120 43-313 (333)
121 3op5_A Serine/threonine-protei 100.0 6.3E-38 2.1E-42 361.8 17.6 269 835-1116 33-329 (364)
122 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.6E-38 5.4E-43 360.4 12.2 245 837-1110 9-259 (336)
123 1t46_A HOMO sapiens V-KIT hard 100.0 8.4E-38 2.9E-42 353.2 18.1 264 835-1116 21-307 (313)
124 4fvq_A Tyrosine-protein kinase 100.0 7.2E-38 2.5E-42 349.4 17.3 258 836-1124 7-283 (289)
125 3qup_A Tyrosine-protein kinase 100.0 4.2E-38 1.4E-42 357.3 15.6 270 835-1122 21-304 (323)
126 2ivs_A Proto-oncogene tyrosine 100.0 7.4E-38 2.5E-42 353.8 17.5 263 835-1116 21-311 (314)
127 3g33_A Cell division protein k 100.0 1.4E-37 4.8E-42 350.4 19.6 268 835-1110 7-297 (308)
128 3q4u_A Activin receptor type-1 100.0 7.2E-38 2.4E-42 351.6 17.2 263 836-1114 7-300 (301)
129 2eva_A TAK1 kinase - TAB1 chim 100.0 1.3E-37 4.4E-42 350.1 19.2 256 836-1119 7-266 (307)
130 3a8x_A Protein kinase C IOTA t 100.0 2E-37 6.7E-42 353.6 20.7 252 836-1110 8-276 (345)
131 1rjb_A FL cytokine receptor; k 100.0 6.4E-38 2.2E-42 359.2 16.5 267 835-1119 43-337 (344)
132 1mp8_A Focal adhesion kinase 1 100.0 6.6E-38 2.2E-42 348.1 16.0 255 836-1115 14-275 (281)
133 3kfa_A Tyrosine-protein kinase 100.0 7E-38 2.4E-42 349.3 16.1 259 835-1116 11-271 (288)
134 3og7_A AKAP9-BRAF fusion prote 100.0 3.4E-37 1.1E-41 343.8 20.9 260 836-1116 23-288 (289)
135 2x4f_A Myosin light chain kina 100.0 1.7E-37 5.8E-42 358.1 18.9 247 840-1109 92-342 (373)
136 3o0g_A Cell division protein k 100.0 3.9E-37 1.3E-41 343.9 21.2 263 837-1110 2-283 (292)
137 1kob_A Twitchin; kinase, intra 100.0 1.2E-37 3.9E-42 360.2 17.2 252 836-1110 50-305 (387)
138 2id5_A Lingo-1, leucine rich r 100.0 8E-37 2.7E-41 366.6 25.0 296 293-592 14-309 (477)
139 2r5t_A Serine/threonine-protei 100.0 1.4E-37 4.9E-42 357.6 17.7 244 836-1106 37-286 (373)
140 2xir_A Vascular endothelial gr 100.0 6.6E-38 2.3E-42 354.6 14.5 268 831-1116 21-310 (316)
141 2h34_A Serine/threonine-protei 100.0 3.1E-37 1.1E-41 347.5 19.9 267 835-1124 32-304 (309)
142 2w4o_A Calcium/calmodulin-depe 100.0 2.6E-37 8.9E-42 353.8 19.5 251 835-1110 51-306 (349)
143 3gni_B Strad alpha; kinase fol 100.0 1.9E-37 6.6E-42 361.3 18.5 209 836-1048 24-244 (389)
144 1csn_A Casein kinase-1; phosph 100.0 3.4E-37 1.2E-41 345.5 19.6 263 836-1118 9-285 (298)
145 3ttj_A Mitogen-activated prote 100.0 3.2E-37 1.1E-41 365.8 20.4 263 836-1110 61-356 (464)
146 2eue_A Carbon catabolite derep 100.0 2.7E-37 9.2E-42 342.0 18.3 245 837-1110 13-263 (275)
147 2a2a_A Death-associated protei 100.0 4.6E-37 1.6E-41 348.3 20.6 251 836-1110 11-273 (321)
148 3f3z_A Calcium/calmodulin-depe 100.0 5.4E-37 1.8E-41 340.0 20.7 251 835-1110 7-262 (277)
149 3fdn_A Serine/threonine-protei 100.0 2.7E-37 9.3E-42 342.7 18.3 247 836-1111 8-259 (279)
150 2pvf_A Fibroblast growth facto 100.0 2.2E-37 7.4E-42 353.0 18.0 263 836-1117 34-319 (334)
151 3c1x_A Hepatocyte growth facto 100.0 6.3E-38 2.2E-42 361.4 13.6 261 838-1119 90-358 (373)
152 2y94_A 5'-AMP-activated protei 100.0 1.7E-37 5.8E-42 367.1 17.5 246 837-1110 16-267 (476)
153 1u5q_A Serine/threonine protei 100.0 2.4E-37 8E-42 353.6 18.0 247 836-1111 53-307 (348)
154 1byg_A CSK, protein (C-termina 100.0 9.7E-38 3.3E-42 346.2 14.3 253 836-1116 20-273 (278)
155 1xbb_A Tyrosine-protein kinase 100.0 1.5E-37 5.2E-42 347.0 16.0 257 836-1116 15-279 (291)
156 2a19_B Interferon-induced, dou 100.0 3.1E-37 1.1E-41 343.2 18.4 256 835-1122 9-280 (284)
157 2v62_A Serine/threonine-protei 100.0 2.6E-37 8.9E-42 353.8 18.0 267 836-1116 36-328 (345)
158 2ozo_A Tyrosine-protein kinase 100.0 2.5E-37 8.5E-42 379.1 19.0 256 838-1116 336-598 (613)
159 3kk8_A Calcium/calmodulin depe 100.0 6.5E-37 2.2E-41 340.7 20.5 251 836-1110 5-262 (284)
160 3qd2_B Eukaryotic translation 100.0 2.1E-37 7.2E-42 353.0 16.9 253 836-1110 5-326 (332)
161 3cc6_A Protein tyrosine kinase 100.0 2.9E-37 9.8E-42 343.0 17.5 255 836-1115 11-272 (281)
162 3llt_A Serine/threonine kinase 100.0 8.6E-37 2.9E-41 352.1 22.1 265 835-1110 33-356 (360)
163 4e5w_A Tyrosine-protein kinase 100.0 2.1E-37 7.3E-42 347.9 16.4 262 836-1114 20-300 (302)
164 4agu_A Cyclin-dependent kinase 100.0 3.7E-37 1.3E-41 347.5 18.4 265 837-1110 3-285 (311)
165 3lzb_A Epidermal growth factor 100.0 2.1E-37 7.3E-42 351.4 16.4 259 836-1118 14-280 (327)
166 3mdy_A Bone morphogenetic prot 100.0 6.7E-37 2.3E-41 349.7 20.2 271 833-1119 33-334 (337)
167 3f66_A Hepatocyte growth facto 100.0 2.3E-37 7.9E-42 346.9 15.9 261 836-1117 24-292 (298)
168 4ejn_A RAC-alpha serine/threon 100.0 2.7E-37 9.2E-42 366.4 17.0 247 836-1109 147-404 (446)
169 2yfx_A Tyrosine-protein kinase 100.0 1.5E-37 5.1E-42 353.3 13.9 274 836-1128 29-316 (327)
170 3lxp_A Non-receptor tyrosine-p 100.0 1.1E-37 3.9E-42 352.6 12.8 260 839-1117 33-311 (318)
171 1p4o_A Insulin-like growth fac 100.0 5.3E-37 1.8E-41 348.1 18.3 263 835-1116 23-299 (322)
172 3uzp_A CKI-delta, CKID, casein 100.0 8.2E-37 2.8E-41 342.1 19.7 266 836-1120 8-284 (296)
173 3p1a_A MYT1 kinase, membrane-a 100.0 4.5E-37 1.6E-41 346.4 17.6 245 836-1110 56-305 (311)
174 3bhy_A Death-associated protei 100.0 1E-36 3.6E-41 338.8 20.2 250 837-1110 5-266 (283)
175 1u46_A ACK-1, activated CDC42 100.0 1.2E-37 4.3E-42 347.8 12.7 260 836-1117 17-285 (291)
176 2y7j_A Phosphorylase B kinase 100.0 1.6E-36 5.4E-41 349.5 22.2 254 833-1110 90-360 (365)
177 4fl3_A Tyrosine-protein kinase 100.0 3.3E-37 1.1E-41 378.8 17.4 248 843-1114 375-629 (635)
178 3dbq_A Dual specificity protei 100.0 3.1E-37 1.1E-41 352.9 16.1 252 836-1111 8-275 (343)
179 2acx_A G protein-coupled recep 100.0 3.1E-37 1E-41 369.1 16.6 253 836-1110 183-445 (576)
180 1nxk_A MAP kinase-activated pr 100.0 3.1E-37 1.1E-41 359.5 16.2 254 836-1110 60-322 (400)
181 3pls_A Macrophage-stimulating 100.0 5.6E-37 1.9E-41 343.8 17.7 260 838-1118 22-289 (298)
182 4eut_A Serine/threonine-protei 100.0 3.3E-37 1.1E-41 359.6 16.4 275 836-1117 8-310 (396)
183 4hgt_A Casein kinase I isoform 100.0 6.5E-37 2.2E-41 342.9 18.2 266 835-1119 7-283 (296)
184 3hko_A Calcium/calmodulin-depe 100.0 3.5E-37 1.2E-41 353.3 16.3 263 833-1110 22-331 (345)
185 2qr7_A Ribosomal protein S6 ki 100.0 2.5E-37 8.5E-42 352.2 14.7 253 835-1110 20-278 (342)
186 3mwu_A Calmodulin-domain prote 100.0 1.3E-36 4.3E-41 364.8 21.5 250 835-1110 20-277 (486)
187 2jii_A Serine/threonine-protei 100.0 5.1E-37 1.7E-41 352.6 17.0 269 836-1120 41-340 (352)
188 3kn6_A Ribosomal protein S6 ki 100.0 3.1E-37 1E-41 349.7 14.9 247 842-1110 16-271 (325)
189 3brb_A Proto-oncogene tyrosine 100.0 9.2E-37 3.2E-41 344.6 18.8 264 835-1116 32-308 (313)
190 3is5_A Calcium-dependent prote 100.0 6.8E-37 2.3E-41 340.5 17.3 253 836-1110 21-279 (285)
191 2i1m_A Macrophage colony-stimu 100.0 3.3E-37 1.1E-41 351.6 14.8 263 835-1115 44-325 (333)
192 3mtl_A Cell division protein k 100.0 3.6E-37 1.2E-41 349.4 15.0 265 837-1110 2-282 (324)
193 3q5i_A Protein kinase; CDPK, m 100.0 1.8E-36 6.3E-41 364.9 22.1 250 835-1110 34-302 (504)
194 3lij_A Calcium/calmodulin depe 100.0 1.5E-36 5E-41 364.8 20.9 250 836-1110 36-292 (494)
195 3rp9_A Mitogen-activated prote 100.0 1.2E-36 4.3E-41 362.3 20.2 195 836-1036 52-279 (458)
196 2zmd_A Dual specificity protei 100.0 6.7E-37 2.3E-41 355.6 17.4 250 837-1110 56-321 (390)
197 1cm8_A Phosphorylated MAP kina 100.0 3.8E-36 1.3E-40 346.4 23.4 263 836-1116 24-316 (367)
198 2vgo_A Serine/threonine-protei 100.0 1.6E-36 5.6E-41 337.4 19.4 246 836-1110 13-263 (284)
199 1t4h_A Serine/threonine-protei 100.0 1.8E-36 6.2E-41 338.2 19.8 246 838-1110 27-283 (290)
200 3g2f_A Bone morphogenetic prot 100.0 2.9E-37 9.8E-42 352.6 13.5 271 836-1121 12-323 (336)
201 3mi9_A Cell division protein k 100.0 6.6E-36 2.3E-40 343.3 24.9 270 836-1110 16-312 (351)
202 3qyz_A Mitogen-activated prote 100.0 1.6E-36 5.4E-41 350.1 19.7 268 836-1110 26-314 (364)
203 3gbz_A Kinase, CMGC CDK; ssgci 100.0 7E-37 2.4E-41 347.8 16.5 267 834-1110 31-319 (329)
204 4aaa_A Cyclin-dependent kinase 100.0 7.7E-37 2.6E-41 348.0 16.6 266 836-1110 24-307 (331)
205 3kvw_A DYRK2, dual specificity 100.0 2.9E-36 9.9E-41 354.7 21.8 264 836-1110 96-409 (429)
206 3e7e_A HBUB1, BUB1A, mitotic c 100.0 2.5E-36 8.5E-41 348.7 20.8 255 836-1116 64-339 (365)
207 3nyv_A Calmodulin-domain prote 100.0 6.4E-37 2.2E-41 367.6 16.3 249 836-1110 25-282 (484)
208 2x7f_A TRAF2 and NCK-interacti 100.0 1.6E-36 5.5E-41 344.8 18.7 254 835-1110 22-287 (326)
209 2ac3_A MAP kinase-interacting 100.0 2E-36 6.8E-41 342.4 19.1 258 836-1110 11-296 (316)
210 1ua2_A CAK, cell division prot 100.0 4.6E-36 1.6E-40 343.6 22.4 268 835-1111 8-293 (346)
211 3c4z_A Rhodopsin kinase; Ser/T 100.0 1.4E-36 4.7E-41 363.1 18.4 254 837-1109 185-448 (543)
212 3gxj_A TGF-beta receptor type- 100.0 6E-38 2E-42 352.6 6.1 268 836-1119 2-300 (303)
213 3eb0_A Putative uncharacterize 100.0 2.7E-36 9.1E-41 350.6 20.1 266 835-1109 5-321 (383)
214 3cok_A Serine/threonine-protei 100.0 5.7E-37 2E-41 340.0 13.8 249 836-1110 10-263 (278)
215 3nsz_A CK II alpha, casein kin 100.0 3.5E-36 1.2E-40 342.6 20.5 260 836-1110 35-320 (330)
216 2wqm_A Serine/threonine-protei 100.0 9.3E-37 3.2E-41 344.1 15.5 267 836-1121 31-302 (310)
217 2rku_A Serine/threonine-protei 100.0 2.2E-36 7.4E-41 338.3 18.4 248 836-1110 14-266 (294)
218 2owb_A Serine/threonine-protei 100.0 1.4E-36 4.9E-41 346.2 17.2 249 835-1110 39-292 (335)
219 2w5a_A Serine/threonine-protei 100.0 6.8E-37 2.3E-41 339.6 13.9 259 836-1115 5-273 (279)
220 2h6d_A 5'-AMP-activated protei 100.0 2.6E-36 9E-41 334.3 18.6 247 836-1110 10-262 (276)
221 2jam_A Calcium/calmodulin-depe 100.0 1.9E-36 6.7E-41 340.4 17.5 251 835-1110 7-262 (304)
222 4e7w_A Glycogen synthase kinas 100.0 2.9E-36 9.9E-41 351.0 19.5 270 836-1116 39-330 (394)
223 2buj_A Serine/threonine-protei 100.0 7.1E-37 2.4E-41 346.2 13.8 268 836-1121 28-311 (317)
224 3dls_A PAS domain-containing s 100.0 2.6E-36 9E-41 343.4 18.4 243 834-1110 21-275 (335)
225 2wtk_C Serine/threonine-protei 100.0 7.6E-36 2.6E-40 335.8 21.8 252 836-1110 4-264 (305)
226 3n9x_A Phosphotransferase; mal 100.0 7E-36 2.4E-40 352.2 22.5 200 836-1041 25-252 (432)
227 3pg1_A Mitogen-activated prote 100.0 2.1E-36 7.3E-41 349.1 17.3 271 829-1110 14-317 (362)
228 1fvr_A Tyrosine-protein kinase 100.0 1.4E-36 4.7E-41 345.4 15.4 261 836-1118 24-302 (327)
229 3pfq_A PKC-B, PKC-beta, protei 100.0 2.9E-36 9.8E-41 373.0 19.5 248 835-1109 339-597 (674)
230 2y4i_B KSR2, HKSR2, kinase sup 100.0 8.6E-37 3E-41 345.9 13.4 263 835-1121 31-307 (319)
231 3rgf_A Cyclin-dependent kinase 100.0 4.8E-36 1.7E-40 351.2 20.1 271 837-1111 20-335 (405)
232 2r3i_A Cell division protein k 100.0 7.3E-36 2.5E-40 334.9 20.7 264 837-1110 3-284 (299)
233 3i6u_A CDS1, serine/threonine- 100.0 1.4E-36 4.9E-41 356.4 15.4 251 834-1110 132-400 (419)
234 1vzo_A Ribosomal protein S6 ki 100.0 1.5E-36 5.2E-41 348.5 15.3 254 836-1111 53-323 (355)
235 2xrw_A Mitogen-activated prote 100.0 9.2E-36 3.2E-40 344.3 21.9 262 836-1110 24-319 (371)
236 1j1b_A Glycogen synthase kinas 100.0 6.1E-36 2.1E-40 351.2 20.5 266 836-1110 53-337 (420)
237 1blx_A Cyclin-dependent kinase 100.0 8.3E-36 2.8E-40 338.9 21.0 269 835-1116 9-305 (326)
238 3eqc_A Dual specificity mitoge 100.0 3.7E-36 1.3E-40 346.7 18.3 203 836-1049 32-238 (360)
239 2w1i_A JAK2; chromosomal rearr 100.0 1.5E-36 5.3E-41 344.7 14.7 263 836-1115 40-321 (326)
240 1b6c_B TGF-B superfamily recep 100.0 7.2E-36 2.5E-40 341.9 20.3 270 832-1117 37-337 (342)
241 3a7i_A MST3 kinase, serine/thr 100.0 5.8E-36 2E-40 336.4 18.7 249 836-1111 21-272 (303)
242 3ll6_A Cyclin G-associated kin 100.0 3E-36 1E-40 344.3 16.3 261 836-1119 27-311 (337)
243 2vwi_A Serine/threonine-protei 100.0 2.1E-36 7.1E-41 340.0 14.6 267 835-1110 13-288 (303)
244 2yex_A Serine/threonine-protei 100.0 2.3E-36 8E-41 334.7 14.6 254 835-1110 5-262 (276)
245 3sv0_A Casein kinase I-like; t 100.0 6.9E-36 2.4E-40 354.0 19.2 261 836-1115 6-277 (483)
246 3com_A Serine/threonine-protei 100.0 1.3E-35 4.5E-40 335.3 20.6 252 835-1110 27-279 (314)
247 1phk_A Phosphorylase kinase; g 100.0 1E-35 3.5E-40 333.6 19.4 250 836-1109 16-283 (298)
248 3byv_A Rhoptry kinase; malaria 100.0 8.7E-38 3E-42 362.3 2.6 244 836-1109 72-359 (377)
249 2fst_X Mitogen-activated prote 100.0 9.7E-36 3.3E-40 342.6 19.3 259 836-1110 28-312 (367)
250 3lm5_A Serine/threonine-protei 100.0 3.5E-36 1.2E-40 341.8 14.9 256 833-1110 24-288 (327)
251 3fme_A Dual specificity mitoge 100.0 6E-36 2.1E-40 334.0 16.5 252 836-1109 6-266 (290)
252 1z57_A Dual specificity protei 100.0 1.6E-35 5.5E-40 338.5 20.1 264 836-1110 13-329 (339)
253 3o6n_A APL1; leucine-rich repe 100.0 2.9E-35 9.8E-40 343.2 22.5 336 361-739 43-378 (390)
254 2j7t_A Serine/threonine-protei 100.0 8.7E-36 3E-40 334.8 16.7 253 835-1110 17-276 (302)
255 3oja_B Anopheles plasmodium-re 100.0 8.7E-35 3E-39 357.9 27.1 349 47-473 7-359 (597)
256 1wak_A Serine/threonine-protei 100.0 1.7E-35 6E-40 346.2 19.9 265 836-1110 36-392 (397)
257 2vx3_A Dual specificity tyrosi 100.0 3.2E-35 1.1E-39 341.3 21.9 210 836-1056 53-273 (382)
258 3q60_A ROP5B; pseudokinase, tr 100.0 8.3E-37 2.9E-41 353.4 8.4 253 837-1109 62-352 (371)
259 1x8b_A WEE1HU, WEE1-like prote 100.0 6.9E-36 2.4E-40 333.1 15.6 247 835-1110 9-280 (289)
260 3e3p_A Protein kinase, putativ 100.0 3.5E-35 1.2E-39 338.8 22.0 279 831-1115 17-322 (360)
261 2j0j_A Focal adhesion kinase 1 100.0 1.1E-35 3.8E-40 366.6 18.1 256 835-1115 388-650 (656)
262 2i6l_A Mitogen-activated prote 100.0 1.2E-35 3.9E-40 336.8 16.8 268 836-1110 10-306 (320)
263 2wei_A Calmodulin-domain prote 100.0 2E-35 6.8E-40 329.2 18.4 252 834-1110 19-277 (287)
264 2ycf_A Serine/threonine-protei 100.0 1E-35 3.5E-40 337.3 16.2 249 835-1109 8-274 (322)
265 3oja_B Anopheles plasmodium-re 100.0 4.2E-35 1.4E-39 360.7 22.6 337 361-740 49-385 (597)
266 4exu_A Mitogen-activated prote 100.0 3.6E-35 1.2E-39 339.4 20.4 258 836-1110 41-324 (371)
267 2clq_A Mitogen-activated prote 100.0 2.7E-35 9.4E-40 329.5 18.8 252 838-1110 23-279 (295)
268 3an0_A Dual specificity mitoge 100.0 1.1E-35 3.8E-40 339.9 15.6 254 835-1110 49-311 (340)
269 2b9h_A MAP kinase FUS3, mitoge 100.0 4.3E-35 1.5E-39 337.0 20.1 266 836-1110 10-306 (353)
270 3o6n_A APL1; leucine-rich repe 100.0 3.5E-34 1.2E-38 334.0 27.7 289 337-640 43-331 (390)
271 1zy4_A Serine/threonine-protei 100.0 2.8E-35 9.4E-40 330.8 17.6 255 836-1110 5-284 (303)
272 2pml_X PFPK7, Ser/Thr protein 100.0 4.7E-36 1.6E-40 344.3 11.6 266 836-1110 30-323 (348)
273 2eu9_A Dual specificity protei 100.0 1.4E-34 4.7E-39 333.1 22.0 264 836-1110 18-334 (355)
274 3coi_A Mitogen-activated prote 100.0 2E-34 6.8E-39 331.2 22.6 256 836-1110 23-306 (353)
275 3cek_A Dual specificity protei 100.0 4.7E-35 1.6E-39 330.5 16.5 253 835-1111 26-294 (313)
276 1q8y_A SR protein kinase; tran 100.0 5E-35 1.7E-39 339.2 16.7 200 836-1045 18-239 (373)
277 3fhr_A MAP kinase-activated pr 100.0 2.6E-35 8.8E-40 335.7 13.6 255 835-1110 26-288 (336)
278 3p23_A Serine/threonine-protei 100.0 5.8E-35 2E-39 343.1 15.5 250 837-1109 24-283 (432)
279 2iwi_A Serine/threonine-protei 100.0 4.2E-35 1.4E-39 330.9 12.8 244 834-1112 28-286 (312)
280 3aln_A Dual specificity mitoge 100.0 8.2E-35 2.8E-39 330.8 14.9 256 836-1109 21-285 (327)
281 3a99_A Proto-oncogene serine/t 100.0 4E-35 1.4E-39 331.9 11.8 241 835-1110 41-294 (320)
282 2rio_A Serine/threonine-protei 100.0 8.8E-35 3E-39 342.8 14.8 255 838-1109 16-295 (434)
283 4fmz_A Internalin; leucine ric 100.0 4.5E-33 1.5E-37 319.3 26.9 307 335-688 40-346 (347)
284 4fcg_A Uncharacterized protein 100.0 2.3E-34 8E-39 325.9 15.7 270 25-304 22-315 (328)
285 4fmz_A Internalin; leucine ric 100.0 6.6E-33 2.3E-37 317.9 27.1 304 313-639 42-345 (347)
286 2dyl_A Dual specificity mitoge 100.0 6.7E-34 2.3E-38 322.0 17.4 249 836-1109 24-283 (318)
287 3uqc_A Probable conserved tran 100.0 2.1E-34 7.3E-39 319.6 10.6 235 836-1120 30-269 (286)
288 3qa8_A MGC80376 protein; kinas 100.0 6.7E-34 2.3E-38 343.0 13.5 261 836-1106 13-294 (676)
289 1xku_A Decorin; proteoglycan, 100.0 6.3E-32 2.2E-36 307.2 25.4 295 144-470 32-330 (330)
290 2ft3_A Biglycan; proteoglycan, 100.0 9E-32 3.1E-36 306.2 25.9 128 314-447 32-159 (332)
291 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-33 1.3E-37 314.0 14.2 248 436-710 51-302 (313)
292 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-31 4.5E-36 304.8 26.1 250 290-551 33-284 (332)
293 1z7x_W Ribonuclease inhibitor; 100.0 8E-36 2.7E-40 356.5 -9.3 356 315-690 3-413 (461)
294 1xku_A Decorin; proteoglycan, 100.0 1.9E-31 6.6E-36 303.2 27.3 292 313-638 29-330 (330)
295 1z7x_W Ribonuclease inhibitor; 100.0 2E-35 6.8E-40 353.0 -7.6 359 289-666 2-413 (461)
296 2pzi_A Probable serine/threoni 100.0 1.1E-32 3.8E-37 343.8 15.5 239 836-1114 79-326 (681)
297 3m2w_A MAP kinase-activated pr 100.0 9.9E-33 3.4E-37 309.2 13.1 232 836-1110 16-257 (299)
298 3dzo_A Rhoptry kinase domain; 100.0 1.4E-32 4.7E-37 321.9 13.1 243 836-1108 77-362 (413)
299 2vuw_A Serine/threonine-protei 100.0 6.4E-32 2.2E-36 308.1 11.5 240 836-1108 19-329 (336)
300 3ogk_B Coronatine-insensitive 100.0 5E-32 1.7E-36 334.5 -4.2 65 626-690 462-528 (592)
301 2z80_A TOLL-like receptor 2, v 100.0 2E-29 6.8E-34 289.4 15.9 276 436-716 32-318 (353)
302 3ogk_B Coronatine-insensitive 100.0 3.9E-31 1.3E-35 326.5 -0.5 384 336-722 109-536 (592)
303 2z66_A Variable lymphocyte rec 100.0 1.2E-28 4.2E-33 276.9 19.0 281 317-601 9-296 (306)
304 2z66_A Variable lymphocyte rec 100.0 7.7E-29 2.6E-33 278.6 17.3 260 459-719 28-294 (306)
305 2z80_A TOLL-like receptor 2, v 100.0 7.8E-29 2.7E-33 284.5 16.3 274 316-617 32-315 (353)
306 3g06_A SSPH2 (leucine-rich rep 100.0 1.5E-28 5.3E-33 298.8 18.1 301 45-411 8-308 (622)
307 3zyi_A Leucine-rich repeat-con 100.0 6.3E-28 2.1E-32 286.7 21.0 236 158-424 68-303 (452)
308 1wwl_A Monocyte differentiatio 100.0 1.7E-29 5.9E-34 284.3 6.2 135 139-276 39-188 (312)
309 3zyj_A Leucine-rich repeat-con 100.0 1E-27 3.5E-32 283.7 21.7 236 158-424 57-292 (440)
310 3zyi_A Leucine-rich repeat-con 100.0 2.8E-27 9.6E-32 281.0 24.4 249 315-592 54-303 (452)
311 1ozn_A Reticulon 4 receptor; N 100.0 1.6E-27 5.4E-32 264.8 20.8 236 460-696 33-269 (285)
312 3zyj_A Leucine-rich repeat-con 100.0 3.9E-27 1.3E-31 278.8 25.2 251 313-592 41-292 (440)
313 1ozn_A Reticulon 4 receptor; N 100.0 9.7E-28 3.3E-32 266.6 18.6 225 318-545 14-239 (285)
314 4fcg_A Uncharacterized protein 99.9 2.5E-27 8.7E-32 268.1 19.9 234 459-712 81-314 (328)
315 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-28 4.1E-33 278.1 5.7 262 418-717 17-281 (317)
316 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-28 8.1E-33 275.7 7.5 266 318-597 13-281 (317)
317 3g06_A SSPH2 (leucine-rich rep 99.9 5.9E-26 2E-30 276.1 25.8 268 364-699 41-308 (622)
318 1wwl_A Monocyte differentiatio 99.9 4.6E-28 1.6E-32 272.7 6.7 202 409-616 93-309 (312)
319 3oja_A Leucine-rich immune mol 99.9 4.5E-27 1.5E-31 280.7 9.1 234 460-707 35-270 (487)
320 2p1m_B Transport inhibitor res 99.9 1.3E-28 4.3E-33 304.2 -7.5 374 335-713 101-520 (594)
321 3oja_A Leucine-rich immune mol 99.9 3.7E-26 1.3E-30 272.7 13.3 234 388-635 35-270 (487)
322 4azs_A Methyltransferase WBDD; 99.9 2.3E-27 8E-32 286.8 2.1 184 844-1040 241-437 (569)
323 2o6q_A Variable lymphocyte rec 99.9 5.3E-25 1.8E-29 242.2 19.0 216 59-304 3-219 (270)
324 2p1m_B Transport inhibitor res 99.9 4.1E-28 1.4E-32 299.6 -6.7 433 256-710 61-542 (594)
325 2z62_A TOLL-like receptor 4, v 99.9 8.4E-25 2.9E-29 241.6 19.2 209 508-717 29-242 (276)
326 2z62_A TOLL-like receptor 4, v 99.9 3.5E-24 1.2E-28 236.6 19.5 180 340-520 29-213 (276)
327 3rfs_A Internalin B, repeat mo 99.9 3.5E-24 1.2E-28 235.8 15.9 229 141-410 17-245 (272)
328 2o6q_A Variable lymphocyte rec 99.9 2E-23 6.9E-28 229.5 21.2 205 509-716 18-222 (270)
329 3rfs_A Internalin B, repeat mo 99.9 1.1E-23 3.6E-28 231.9 16.3 211 335-580 37-247 (272)
330 1p9a_G Platelet glycoprotein I 99.9 2.5E-23 8.4E-28 230.8 16.6 204 505-715 8-211 (290)
331 3m19_A Variable lymphocyte rec 99.9 5.4E-23 1.8E-27 223.5 16.8 189 59-275 3-193 (251)
332 3goz_A Leucine-rich repeat-con 99.9 7.8E-25 2.7E-29 251.8 1.1 256 367-642 2-299 (362)
333 3goz_A Leucine-rich repeat-con 99.9 1E-24 3.5E-29 250.8 1.4 258 439-716 2-301 (362)
334 1p9a_G Platelet glycoprotein I 99.9 3.1E-22 1.1E-26 222.0 21.0 175 364-542 32-206 (290)
335 3en9_A Glycoprotease, O-sialog 99.9 1.7E-24 5.9E-29 260.3 2.3 185 840-1041 339-538 (540)
336 2xwt_C Thyrotropin receptor; s 99.9 2.6E-22 8.9E-27 216.4 16.0 203 158-397 25-236 (239)
337 2ca6_A RAN GTPase-activating p 99.9 1.9E-24 6.5E-29 251.2 -1.5 197 323-520 17-257 (386)
338 3cvr_A Invasion plasmid antige 99.9 1.7E-23 5.9E-28 251.1 6.7 206 48-281 32-250 (571)
339 2ca6_A RAN GTPase-activating p 99.9 9.3E-25 3.2E-29 253.8 -4.4 240 452-691 25-319 (386)
340 2xwt_C Thyrotropin receptor; s 99.9 8.7E-22 3E-26 212.3 17.4 131 340-472 32-169 (239)
341 2ast_B S-phase kinase-associat 99.9 1.8E-23 6.3E-28 238.1 4.1 255 316-601 48-315 (336)
342 4glp_A Monocyte differentiatio 99.9 3.2E-22 1.1E-26 224.8 13.6 202 337-544 89-307 (310)
343 4glp_A Monocyte differentiatio 99.9 2.2E-22 7.5E-27 226.1 12.3 203 459-688 91-307 (310)
344 2ast_B S-phase kinase-associat 99.9 1.5E-23 5.1E-28 238.9 2.7 252 437-720 49-314 (336)
345 3m19_A Variable lymphocyte rec 99.9 3.3E-21 1.1E-25 209.3 19.0 178 316-496 15-192 (251)
346 4ay9_X Follicle-stimulating ho 99.9 1.4E-21 4.8E-26 223.4 16.2 240 148-422 14-257 (350)
347 1h6u_A Internalin H; cell adhe 99.9 2E-21 6.9E-26 217.6 15.0 193 481-713 39-231 (308)
348 1h6u_A Internalin H; cell adhe 99.9 2.6E-21 8.8E-26 216.8 15.3 194 335-568 37-230 (308)
349 4ay9_X Follicle-stimulating ho 99.8 1.3E-20 4.3E-25 215.4 17.4 152 318-472 12-167 (350)
350 1zar_A RIO2 kinase; serine kin 99.8 9.4E-22 3.2E-26 216.5 6.4 148 833-1014 86-252 (282)
351 2o6s_A Variable lymphocyte rec 99.8 4.9E-20 1.7E-24 193.9 15.7 180 317-506 9-188 (208)
352 2o6s_A Variable lymphocyte rec 99.8 7.5E-20 2.6E-24 192.5 16.6 176 511-696 11-186 (208)
353 3cvr_A Invasion plasmid antige 99.8 4.3E-20 1.5E-24 221.7 15.9 194 460-698 60-253 (571)
354 1dce_A Protein (RAB geranylger 99.8 3.2E-21 1.1E-25 233.0 -0.6 198 91-296 345-566 (567)
355 4b8c_D Glucose-repressible alc 99.8 1.1E-20 3.7E-25 235.8 3.3 233 26-271 128-369 (727)
356 3e6j_A Variable lymphocyte rec 99.8 8.2E-19 2.8E-23 187.2 16.2 158 59-276 17-174 (229)
357 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.4E-24 192.1 9.3 158 558-718 14-172 (220)
358 1h6t_A Internalin B; cell adhe 99.8 3.8E-19 1.3E-23 197.2 12.4 192 141-400 22-213 (291)
359 2xot_A Amphoterin-induced prot 99.8 4.9E-19 1.7E-23 203.1 12.5 177 148-352 23-202 (361)
360 1m9s_A Internalin B; cell inva 99.8 8E-19 2.7E-23 213.2 14.8 188 317-520 23-210 (605)
361 2v9t_B SLIT homolog 2 protein 99.8 4E-19 1.4E-23 188.3 9.5 155 559-716 15-169 (220)
362 1h6t_A Internalin B; cell adhe 99.8 6.9E-19 2.4E-23 195.2 11.7 185 320-520 29-213 (291)
363 1m9s_A Internalin B; cell inva 99.8 1.4E-18 4.9E-23 211.0 14.8 193 141-377 19-211 (605)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-18 9.6E-23 181.8 14.5 153 317-472 13-166 (220)
365 2v9t_B SLIT homolog 2 protein 99.8 3.7E-18 1.3E-22 180.9 15.3 152 317-471 13-164 (220)
366 1dce_A Protein (RAB geranylger 99.8 1.3E-20 4.4E-25 227.7 -5.4 121 341-466 443-567 (567)
367 2xot_A Amphoterin-induced prot 99.8 1.5E-18 5.2E-23 199.0 11.9 176 317-495 20-201 (361)
368 3e6j_A Variable lymphocyte rec 99.7 1.8E-17 6.1E-22 176.8 16.5 156 313-472 17-172 (229)
369 1xeu_A Internalin C; cellular 99.7 3.9E-18 1.3E-22 185.9 9.7 150 504-666 38-187 (263)
370 1zth_A RIO1 serine protein kin 99.7 6.7E-18 2.3E-22 183.6 11.1 135 838-987 48-218 (258)
371 1xeu_A Internalin C; cellular 99.7 4.5E-18 1.5E-22 185.5 9.7 169 314-497 18-186 (263)
372 4ezg_A Putative uncharacterize 99.7 6.8E-18 2.3E-22 175.7 9.6 154 92-274 41-194 (197)
373 4b8c_D Glucose-repressible alc 99.7 3E-18 1E-22 213.8 6.8 198 490-714 208-406 (727)
374 3sb4_A Hypothetical leucine ri 99.7 5.5E-18 1.9E-22 191.8 8.3 221 338-562 100-328 (329)
375 4ezg_A Putative uncharacterize 99.7 1.8E-17 6.2E-22 172.4 11.5 154 552-713 41-195 (197)
376 3sb4_A Hypothetical leucine ri 99.7 1.5E-17 5.2E-22 188.2 8.4 263 338-633 48-327 (329)
377 1w8a_A SLIT protein; signaling 99.7 2.3E-17 7.9E-22 170.7 8.9 130 558-690 11-141 (192)
378 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.3E-21 165.1 11.9 130 534-666 11-141 (192)
379 4fdw_A Leucine rich hypothetic 99.7 3.6E-15 1.2E-19 172.2 21.9 268 317-616 115-383 (401)
380 4fdw_A Leucine rich hypothetic 99.6 1.9E-14 6.4E-19 166.2 23.5 242 388-640 136-383 (401)
381 2wfh_A SLIT homolog 2 protein 99.6 4.8E-16 1.6E-20 160.7 8.9 132 582-717 13-144 (193)
382 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.7E-20 158.0 11.5 126 148-275 15-140 (193)
383 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.5E-20 153.3 11.5 132 555-688 24-160 (168)
384 2o6r_A Variable lymphocyte rec 99.6 2.6E-15 8.8E-20 153.2 12.6 120 159-278 22-141 (177)
385 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5E-20 153.6 10.2 108 315-424 24-133 (168)
386 4fs7_A Uncharacterized protein 99.6 2.5E-14 8.4E-19 166.1 21.9 316 327-659 59-374 (394)
387 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.7E-20 149.7 8.5 127 579-707 17-148 (149)
388 4gyi_A RIO2 kinase; protein ki 99.6 1.3E-15 4.6E-20 170.9 8.4 136 838-987 96-264 (397)
389 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.1E-20 148.3 8.8 128 555-684 17-149 (149)
390 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 147.9 12.8 132 316-450 8-139 (177)
391 4fs7_A Uncharacterized protein 99.5 1.7E-13 6E-18 158.9 22.7 322 316-656 72-393 (394)
392 1ds9_A Outer arm dynein; leuci 99.5 2.1E-16 7.3E-21 164.4 -5.2 133 574-713 43-186 (198)
393 1ds9_A Outer arm dynein; leuci 99.5 4.9E-16 1.7E-20 161.7 -5.0 152 530-688 17-185 (198)
394 1a9n_A U2A', U2A'; complex (nu 99.5 3.6E-14 1.2E-18 144.4 8.3 130 314-448 18-153 (176)
395 1a9n_A U2A', U2A'; complex (nu 99.5 4.2E-14 1.4E-18 144.0 7.9 130 577-712 17-153 (176)
396 3g39_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 133.6 12.1 107 167-276 11-117 (170)
397 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 131.8 11.9 105 168-275 15-119 (174)
398 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 132.0 11.2 108 315-425 9-116 (170)
399 2r9u_A Variable lymphocyte rec 99.4 8.9E-13 3.1E-17 133.5 10.0 104 148-252 17-120 (174)
400 4gt6_A Cell surface protein; l 99.4 3.5E-11 1.2E-15 139.5 22.8 133 548-687 258-390 (394)
401 4gt6_A Cell surface protein; l 99.3 4.6E-11 1.6E-15 138.4 22.8 322 317-663 66-390 (394)
402 3un9_A NLR family member X1; l 99.3 4.1E-14 1.4E-18 161.7 -7.2 141 555-695 101-259 (372)
403 3un9_A NLR family member X1; l 99.2 8.4E-14 2.9E-18 159.2 -7.1 143 531-673 101-261 (372)
404 2ifg_A High affinity nerve gro 99.2 5.3E-11 1.8E-15 135.5 10.2 103 169-274 12-116 (347)
405 2ifg_A High affinity nerve gro 99.1 5.8E-11 2E-15 135.1 9.0 89 599-688 27-116 (347)
406 3tm0_A Aminoglycoside 3'-phosp 99.1 2.9E-10 1E-14 123.7 11.3 141 834-986 11-212 (263)
407 4h09_A Hypothetical leucine ri 99.0 1.9E-08 6.4E-13 115.8 24.9 81 312-397 43-123 (379)
408 4h09_A Hypothetical leucine ri 99.0 1.3E-08 4.5E-13 117.1 23.1 147 500-651 210-356 (379)
409 1nd4_A Aminoglycoside 3'-phosp 98.9 1.6E-09 5.6E-14 117.6 10.6 133 838-986 21-213 (264)
410 2ra8_A Uncharacterized protein 98.9 4.9E-10 1.7E-14 126.7 5.0 62 523-587 164-227 (362)
411 3rw6_A Nuclear RNA export fact 98.9 2.5E-11 8.6E-16 129.9 -5.7 149 59-230 76-237 (267)
412 2ra8_A Uncharacterized protein 98.9 3.9E-10 1.3E-14 127.5 2.0 156 550-710 167-341 (362)
413 3dxp_A Putative acyl-COA dehyd 98.8 9.8E-09 3.4E-13 117.1 10.1 139 841-987 42-248 (359)
414 3sg8_A APH(2'')-ID; antibiotic 98.6 6.8E-09 2.3E-13 115.4 2.3 186 842-1041 25-287 (304)
415 1io0_A Tropomodulin; LRR prote 98.4 3.4E-08 1.2E-12 100.7 -0.4 63 650-712 92-164 (185)
416 1io0_A Tropomodulin; LRR prote 98.3 4.5E-08 1.5E-12 99.8 -0.7 89 600-688 62-164 (185)
417 3r70_A Aminoglycoside phosphot 98.3 1.3E-06 4.3E-11 97.7 9.3 133 838-987 38-237 (320)
418 3rw6_A Nuclear RNA export fact 98.3 8.7E-08 3E-12 102.4 -0.3 41 337-377 168-210 (267)
419 3tdw_A Gentamicin resistance p 98.2 5.7E-06 2E-10 91.6 12.0 76 842-922 24-102 (306)
420 3d1u_A Putative fructosamine-3 98.1 1.3E-05 4.6E-10 87.5 12.8 76 840-920 18-97 (288)
421 3ovc_A Hygromycin-B 4-O-kinase 97.9 2.2E-05 7.5E-10 89.0 10.3 77 839-920 43-121 (362)
422 4gkh_A Aminoglycoside 3'-phosp 97.9 2.7E-05 9.2E-10 84.6 10.6 131 844-986 31-222 (272)
423 3e4g_A ATP synthase subunit S, 97.8 7E-06 2.4E-10 81.2 2.2 34 580-613 62-95 (176)
424 3ats_A Putative uncharacterize 97.8 2.9E-05 1E-09 88.1 7.6 79 842-920 25-120 (357)
425 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.7E-10 79.8 3.4 84 603-686 61-150 (176)
426 2olc_A MTR kinase, methylthior 97.6 0.00019 6.5E-09 82.6 12.1 74 842-918 35-120 (397)
427 2q83_A YTAA protein; 2635576, 97.6 0.00021 7.1E-09 80.4 11.7 140 843-986 38-251 (346)
428 1pgv_A TMD-1, tropomodulin TMD 97.2 6.1E-05 2.1E-09 75.9 0.9 17 695-711 153-169 (197)
429 1pgv_A TMD-1, tropomodulin TMD 97.2 5.9E-05 2E-09 76.0 0.3 64 578-641 40-112 (197)
430 3rfe_A Platelet glycoprotein I 97.1 0.00032 1.1E-08 66.1 4.8 56 147-202 12-68 (130)
431 3f7w_A Putative fructosamine-3 97.0 0.0034 1.2E-07 68.5 11.8 78 837-919 15-96 (288)
432 2pyw_A Uncharacterized protein 96.9 0.003 1E-07 73.1 11.6 81 955-1038 230-313 (420)
433 3dxq_A Choline/ethanolamine ki 96.9 0.002 6.7E-08 70.9 9.4 70 842-919 23-94 (301)
434 2ppq_A HSK, HK, homoserine kin 96.9 0.0041 1.4E-07 69.0 11.8 158 827-986 7-216 (322)
435 1zyl_A Hypothetical protein YI 96.9 0.0043 1.5E-07 69.0 11.9 140 843-986 32-222 (328)
436 3jr1_A Putative fructosamine-3 96.8 0.0064 2.2E-07 66.7 11.8 75 842-920 41-118 (312)
437 3csv_A Aminoglycoside phosphot 96.7 0.0047 1.6E-07 68.9 10.8 140 843-987 24-217 (333)
438 3feg_A Choline/ethanolamine ki 96.5 0.0076 2.6E-07 68.0 10.3 139 843-986 56-253 (379)
439 3rfe_A Platelet glycoprotein I 96.4 0.0042 1.4E-07 58.4 6.3 56 217-274 12-68 (130)
440 1nw1_A Choline kinase (49.2 KD 96.3 0.011 3.9E-07 68.1 10.2 70 842-917 78-156 (429)
441 3c5i_A Choline kinase; choline 96.1 0.0064 2.2E-07 68.9 6.7 72 843-919 39-120 (369)
442 2qg7_A Ethanolamine kinase PV0 95.8 0.045 1.5E-06 63.4 12.2 71 843-918 114-186 (458)
443 3mes_A Choline kinase; malaria 94.8 0.038 1.3E-06 63.1 7.5 72 843-919 76-156 (424)
444 3i1a_A Spectinomycin phosphotr 94.7 0.093 3.2E-06 58.4 10.1 31 957-987 206-236 (339)
445 3f2s_A CK, chetk-alpha, cholin 94.5 0.13 4.5E-06 58.1 10.8 29 958-986 245-279 (401)
446 2yle_A Protein spire homolog 1 92.7 1 3.6E-05 45.4 12.2 98 918-1036 33-131 (229)
447 3g15_A CK, chetk-alpha, cholin 87.5 1.2 4E-05 50.6 8.7 29 959-987 246-280 (401)
448 3cxl_A N-chimerin; SH2, RHO-GA 73.0 0.4 1.4E-05 55.6 -2.1 59 841-902 146-214 (463)
449 4ann_A ESSB; membrane protein, 65.0 8.3 0.00029 38.8 5.8 114 890-1042 43-158 (215)
450 4ano_A ESSB; membrane protein, 59.7 23 0.00079 35.7 8.0 113 890-1041 48-162 (219)
451 2lz0_A Uncharacterized protein 44.5 34 0.0012 29.7 5.6 48 325-373 6-53 (100)
452 2l2t_A Receptor tyrosine-prote 37.0 21 0.00074 25.6 2.4 9 776-784 32-40 (44)
453 1iij_A ERBB-2 receptor protein 33.7 29 0.00099 23.5 2.5 6 778-783 28-33 (35)
454 2lz0_A Uncharacterized protein 31.8 83 0.0029 27.1 6.1 14 429-442 37-50 (100)
455 3ls8_A Phosphatidylinositol 3- 26.5 4.3E+02 0.015 30.9 12.6 45 937-985 454-500 (614)
456 3ox7_P MH027; urokinase-type p 23.1 27 0.00093 20.1 0.8 9 59-67 6-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-94 Score=910.87 Aligned_cols=708 Identities=31% Similarity=0.469 Sum_probs=652.9
Q ss_pred ccCchhHHHHHHHHHHhCCCCCCCccCCCCCCCCCCCccceeeeCCCceEEEeeCCcccCcc---cchhhcccccCcEEE
Q 001171 25 NAVVLSEIQALTSFKLHLKDPLGALDGWDSSTPSAPCDWRGIVCYNNRVRELRLPRLQLAGR---LTDQLADLHELRKLS 101 (1133)
Q Consensus 25 ~~~~~~~~~~l~~~k~~~~~~~~~l~~w~~~~~~~~c~w~gv~c~~~~v~~l~l~~~~l~g~---~~~~l~~l~~L~~L~ 101 (1133)
.++.++|++||++||+++.||. ++++|+.+ .+||.|.||+|+.++|++|+|.+.++.|. +++++.+|++|+.++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~--~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSN--KNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT--SCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCC--CCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3446789999999999999998 89999744 47999999999989999999999999999 999999999999999
Q ss_pred cccCcccCCCCccccCCCCcceEeccCCcccCcCCC--ccccccchhhhhhcccccCCCccCcc---CCcceEEEccCCc
Q 001171 102 LHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPL--SIFNLTNLLVLNVAHNLLSGKISADI---SPSLRYLDLSSNA 176 (1133)
Q Consensus 102 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~--~l~~l~~L~~L~l~~N~l~~~~~~~~---~~~l~~L~Ls~N~ 176 (1133)
++.|.+. .+|..++.+++|++|+|++|.++|.+|. .++++++|++|++++|.+++.+|..+ .++|++|||++|+
T Consensus 84 ~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 84 LSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 9999876 4678999999999999999999999999 99999999999999999998888765 4799999999999
Q ss_pred CCCCCCCC---CCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeeccccccCCCC
Q 001171 177 FTGEIPGN---FSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLI 253 (1133)
Q Consensus 177 ~~~~~p~~---~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 253 (1133)
+++..|.. +.++++|++|++++|++++.+|. +.+++|++|+|++|++++.+|. ++++++|++|++++|++++.+
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 99988877 88999999999999999987774 8899999999999999988887 999999999999999999999
Q ss_pred CCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCc
Q 001171 254 PGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPS 333 (1133)
Q Consensus 254 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 333 (1133)
|..|..+++|++|+|++|++++.+|. .++++|++|++++|.+++.+....+..+.+|++|+|++|++++..|.
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCC-------CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred cHHHhcCCCCCEEECCCCcccCccCc-------cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 99999999999999999999988775 26899999999999999877544445568999999999999999999
Q ss_pred hhhcccccceeeccCceeecccCcc-cCCCCCCcEEEccCCcccccCchhhccCC-CccEEEccCCcccccCCCccCC--
Q 001171 334 WLTNVTSLRVMDLSGNFFSGNLPAA-VGSLDKLEVLRVANNSLSGLVPDEIAKCS-LLQMFDLEGNRFSGQVPAFLGG-- 409 (1133)
Q Consensus 334 ~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~-- 409 (1133)
.|.++++|++|+|++|.+.+.+|.. ++.+++|++|++++|++++.+|..+.+++ +|++|+|++|++++.+|..+..
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 9999999999999999999888876 99999999999999999999999999998 9999999999999999998877
Q ss_pred CCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEE
Q 001171 410 IRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLN 489 (1133)
Q Consensus 410 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 489 (1133)
+++|+.|++++|.+++.+|..|.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccC
Q 001171 490 LSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTG 569 (1133)
Q Consensus 490 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 569 (1133)
+++|++++.+|..+.++++|++|++++|++++.+|.++..+++|++|+|++|++++.+|..+.++++|++|++++|.+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccceeecccC----------------------ccCCCCCccccCCCCccEEEecCCcccCCCcccccccc
Q 001171 570 DIPATYGFLRSLVFLSLSHN----------------------QISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLS 627 (1133)
Q Consensus 570 ~~~~~~~~l~~L~~L~Ls~N----------------------~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 627 (1133)
.+|..+.....+..+++..+ .+.+..+..+..++.+..++++.|.++|.+|..++.++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 99999888776666555442 23455666677778888889999999999999999999
Q ss_pred ccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCcccccc
Q 001171 628 RIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLS 707 (1133)
Q Consensus 628 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 707 (1133)
+|+.|||++|+++|.+|.+++.+++|+.|+|++|+++|.+|..|+++++|+.||||+|+++|.+|..+..+++|++||||
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccccC-CCCCCcccCcCccccCCCCCCCCcchh
Q 001171 708 RNNLEGEIPKMLSS-RFNDPSIFAMNRELCGKPLDRECANVR 748 (1133)
Q Consensus 708 ~N~l~~~~p~~~~~-~~~~~~~~~~n~~lcg~~~~~~c~~~~ 748 (1133)
+|+++|+||..... .|... .|.||+++||.|+. .|....
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~-~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPA-KFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGG-GGCSCTEEESTTSC-CCCSCC
T ss_pred CCcccccCCCchhhccCCHH-HhcCCchhcCCCCc-CCCCCc
Confidence 99999999985332 24433 49999999999987 786543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-75 Score=740.11 Aligned_cols=627 Identities=32% Similarity=0.456 Sum_probs=573.9
Q ss_pred EeeCCcccCcccc--hhhcccccCcEEEcccCcccCCCCc--cccCCCCcceEeccCCcccCcCCCcc-ccccchhhhhh
Q 001171 76 LRLPRLQLAGRLT--DQLADLHELRKLSLHSNHLNGSIPA--SLHQCSLLRAVYLQYNSFSGHLPLSI-FNLTNLLVLNV 150 (1133)
Q Consensus 76 l~l~~~~l~g~~~--~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~L~~n~~~g~~p~~l-~~l~~L~~L~l 150 (1133)
|++.+++..|.++ +.++.+++|++|||++|+++|.+|. .++++++|++|+|++|++++.+|..+ .++++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 4444556666654 7899999999999999999999998 99999999999999999999999886 89999999999
Q ss_pred cccccCCCccCc---c--CCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccc
Q 001171 151 AHNLLSGKISAD---I--SPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHL 225 (1133)
Q Consensus 151 ~~N~l~~~~~~~---~--~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 225 (1133)
++|.+++.++.. + .++|++|+|++|.+++.+|. ..+++|++|+|++|++++.+|. ++.+++|++|++++|++
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 999999877654 2 47999999999999988765 7899999999999999998888 99999999999999999
Q ss_pred cCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCccccc
Q 001171 226 YGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGV 305 (1133)
Q Consensus 226 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~ 305 (1133)
++.+|..+.++++|++|++++|++++.+|.. .+++|++|+|++|++++.+|..+ +..+++|+.|++++|.+++.
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~----~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL----SGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCS----CTTCTTCSEEECCSSEEEEC
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHH----HhhcCcCCEEECcCCcCCCc
Confidence 9999999999999999999999999888765 89999999999999999888766 23359999999999999986
Q ss_pred ccCCCCCccccccEEeccCCcccccCCc-hhhcccccceeeccCceeecccCcccCCCC-CCcEEEccCCcccccCchhh
Q 001171 306 VKPPNGRCVSVLEVLDLQNNRIRAVFPS-WLTNVTSLRVMDLSGNFFSGNLPAAVGSLD-KLEVLRVANNSLSGLVPDEI 383 (1133)
Q Consensus 306 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~ 383 (1133)
+ +..+..+++|++|+|++|++++..|. .|.++++|++|+|++|.+.+.+|..+..++ +|++|++++|++++.+|..+
T Consensus 310 ~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 310 V-PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp C-CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred c-chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 5 45567788999999999999944454 599999999999999999999999999998 99999999999999888888
Q ss_pred cc--CCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCC
Q 001171 384 AK--CSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNL 461 (1133)
Q Consensus 384 ~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L 461 (1133)
.. +++|++|+|++|++++.+|..++++++|+.|+|++|.+++.+|..|.++++|++|++++|++++.+|..+..+++|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 77 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCC
Q 001171 462 TTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEEN 541 (1133)
Q Consensus 462 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 541 (1133)
++|+|++|++++.+|..++.+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccCcEEEcccc----------------------cccCCCCcccccccccceeecccCccCCCCCccc
Q 001171 542 NLSGDVPEGFSSLVGLQYLNLSDN----------------------AFTGDIPATYGFLRSLVFLSLSHNQISGMIPAEL 599 (1133)
Q Consensus 542 ~l~~~~~~~~~~l~~L~~L~Ls~N----------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 599 (1133)
++++.+|..+.....+..+++..+ .+.+..+..+..++.+..++++.|.++|.+|..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 999999998877766655544431 2445667777788889999999999999999999
Q ss_pred cCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccc
Q 001171 600 GACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTT 679 (1133)
Q Consensus 600 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 679 (1133)
+.+++|++|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..|+++++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCccccccccCccccccccc-ccc
Q 001171 680 LNLSTNRLSGAIPADLALISSLRYLNLSRNN-LEG 713 (1133)
Q Consensus 680 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~~ 713 (1133)
|||++|+++|.+|.. ..+..+....+.+|+ +.|
T Consensus 709 L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred EECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999975 566777888888997 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-63 Score=625.90 Aligned_cols=602 Identities=23% Similarity=0.228 Sum_probs=414.5
Q ss_pred CccceeeeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccc
Q 001171 61 CDWRGIVCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIF 140 (1133)
Q Consensus 61 c~w~gv~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~ 140 (1133)
|.++.|.|++.+. + .+|+.+. +++++|+|++|++++..|..|+++++|+.|+|++|++++..|..++
T Consensus 4 ~~~~~~~cs~~~L----------~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 4 VSHEVADCSHLKL----------T-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70 (680)
T ss_dssp CBSSEEECCSSCC----------S-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred eECCeeECCCCCc----------c-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence 5666677775432 1 2444343 6888999999999877777788999999999999999887788888
Q ss_pred cccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEec
Q 001171 141 NLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWL 220 (1133)
Q Consensus 141 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L 220 (1133)
++++|++|++++|.+++ ..+..|+++++|++|+|++|++++..|..|+.+++|++|++
T Consensus 71 ~l~~L~~L~L~~n~l~~----------------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQ----------------------LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp HCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cccCcCEEECCCCccCc----------------------cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 88777666666555553 33334444444445555444444433344444444555555
Q ss_pred ccccccCCCCccccCccccceeeccccccCCCCCCccc--CcCcccEEEcccCCccCCcccccccCcccccccccEEecc
Q 001171 221 DSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIG--RISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLG 298 (1133)
Q Consensus 221 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~ 298 (1133)
++|++++..|..+.++++|++|++++|++++..+..+. .+++|++|++++|++++..|..+ ..+.+|+.++++
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~ 203 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-----HAIGRLFGLFLN 203 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-----GGSSEECEEECT
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh-----hhhhhhhhhhcc
Confidence 54444444444444444555555555544444433322 23445555555555544433322 444444444444
Q ss_pred CCcccccccCC--CCCccccccEEeccCCcccccCCchhhcccc--cceeeccCceeecccCcccCCCCCCcEEEccCCc
Q 001171 299 FNAFTGVVKPP--NGRCVSVLEVLDLQNNRIRAVFPSWLTNVTS--LRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNS 374 (1133)
Q Consensus 299 ~n~l~~~~~~~--~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 374 (1133)
++.+.+..... .......|++|++++|+++++.|.+|.+++. |++|+|++|++++..|..|+.+++|++|++++|+
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 44443211000 0001245777777777777777888877765 8888888888887777778888888888888888
Q ss_pred ccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChh
Q 001171 375 LSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEE 454 (1133)
Q Consensus 375 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~ 454 (1133)
+++..|..|..+++|++|++++|...+.++. +.+.......|..+++|++|++++|++++..+..
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---------------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISL---------------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC---------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred cCccChhhhcCCCCccEEeccchhhhccccc---------------ccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 8877777788888888888877655432210 0111112235566666666666666666666666
Q ss_pred hcCCCCCcEEecccCcCCCC--CCCCCCCC--CCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCC-hhccC
Q 001171 455 ITRLSNLTTLNLSYNKFGGK--VPYDVGNL--KGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELP-IELFG 529 (1133)
Q Consensus 455 l~~l~~L~~L~Ls~N~l~~~--~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~ 529 (1133)
|.++++|++|++++|.+... ....+..+ ++|+.|++++|++++..|..|..+++|+.|++++|.+++.+| ..+.+
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 66666777777766654321 12223322 477888888888887777788888888888888888876555 67778
Q ss_pred CCCCcEeeccCCcccccCCCCCCCCccCcEEEccccccc--CCCCcccccccccceeecccCccCCCCCccccCCCCccE
Q 001171 530 LPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFT--GDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEV 607 (1133)
Q Consensus 530 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 607 (1133)
+++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..+..+++|++|+|++|++++..+..+..+++|++
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence 888888888888888788888888888888888888876 567788888888888888888888777777888888889
Q ss_pred EEecCCcccCC--------CccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccc
Q 001171 608 LELRSNHFTGN--------IPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTT 679 (1133)
Q Consensus 608 L~L~~N~l~~~--------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 679 (1133)
|+|++|++++. .+..+..+++|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 99988888753 1123788999999999999999544456899999999999999999877778899999999
Q ss_pred cccccccccccCCcccc-ccccCcccccccccccccCCc
Q 001171 680 LNLSTNRLSGAIPADLA-LISSLRYLNLSRNNLEGEIPK 717 (1133)
Q Consensus 680 L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~ 717 (1133)
|+|++|++++..|..+. .+++|+.|++++|++.|.++.
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred EECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999988777777 789999999999999999884
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8e-62 Score=611.12 Aligned_cols=566 Identities=22% Similarity=0.234 Sum_probs=492.5
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccC
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYG 227 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 227 (1133)
+++++++++ .+|..+|+++++|+|++|.+++..+..|.++++|++|+|++|++++..|..++++++|++|+|++|++++
T Consensus 9 ~~cs~~~L~-~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp EECCSSCCS-SCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred eECCCCCcc-ccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence 444555554 4667777889999999999998888889999999999999999999889999999999999999999985
Q ss_pred CCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCccccccc
Q 001171 228 TLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVK 307 (1133)
Q Consensus 228 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 307 (1133)
..+..|+++++|++|++++|+++++.|..|+++++|++|+|++|++++..|..+ +++++|+.|++++|.+++...
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-----VQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-----SCCTTCCEEECCSSCCCCBCH
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-----cccccCCEEEccCCcccccCH
Confidence 555579999999999999999998888899999999999999999988766554 789999999999999987542
Q ss_pred CCC-CCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccC---CCCCCcEEEccCCcccccCchhh
Q 001171 308 PPN-GRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVG---SLDKLEVLRVANNSLSGLVPDEI 383 (1133)
Q Consensus 308 ~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~~~~~~ 383 (1133)
... ......|++|++++|+++++.|..|..+++|+.|++++|.+.+.....+. ..++|+.|++++|.+++..|..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 111 12347899999999999999999999999999999999998743322221 35899999999999999999999
Q ss_pred ccCCC--ccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccc-----cCC----
Q 001171 384 AKCSL--LQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRG-----NIP---- 452 (1133)
Q Consensus 384 ~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~-----~~~---- 452 (1133)
..++. |++|+|++|++++..|..|+.+++|++|++++|.+++..|..|.++++|++|++++|...+ .+|
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 88865 9999999999999999999999999999999999999999999999999999999886553 223
Q ss_pred hhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccc--cCCCcCCc--ccccEEeccccCCCCCCChhcc
Q 001171 453 EEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGK--IPGSIGSL--MRLTTLDLSNQNLSGELPIELF 528 (1133)
Q Consensus 453 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~ 528 (1133)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.++.. ....|..+ ++|+.|++++|++++..|..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 3788999999999999999999999999999999999999986432 23344443 5899999999999999999999
Q ss_pred CCCCCcEeeccCCcccccCC-CCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccC--CCCCccccCCCCc
Q 001171 529 GLPSLQVVSLEENNLSGDVP-EGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQIS--GMIPAELGACSAL 605 (1133)
Q Consensus 529 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L 605 (1133)
.+++|++|++++|.+++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.++ +..|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 99999999999999987665 68999999999999999999999999999999999999999987 5788999999999
Q ss_pred cEEEecCCcccCCCccccccccccCeeecCCCcccCcCc--------hhhhccCCCcEEEeecCCCCccCCccccCcccc
Q 001171 606 EVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIP--------KEISKCSSLVSLTLDMNSLSGRIPESFSKLSNL 677 (1133)
Q Consensus 606 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 677 (1133)
++|++++|++++..+..+..+++|++|+|++|++++..+ ..+..+++|+.|+|++|+++...+..|.++++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 999999999998777779999999999999999986422 247899999999999999996555679999999
Q ss_pred cccccccccccccCCccccccccCcccccccccccccCCccc
Q 001171 678 TTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIPKML 719 (1133)
Q Consensus 678 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 719 (1133)
+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 999999999997666678899999999999999998776543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.9e-59 Score=576.43 Aligned_cols=534 Identities=23% Similarity=0.263 Sum_probs=444.3
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccC
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYG 227 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 227 (1133)
+++++..++ .+|..+|+++++|||++|.+++..|..|+++++|++|+|++|++++..|..|+.+++|++|+|++|++++
T Consensus 17 ~~c~~~~l~-~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EECTTSCCS-SCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred EECCCCCcc-cCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 334444444 5677788889999999999998889999999999999999999998888889999999999999999988
Q ss_pred CCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCccccccc
Q 001171 228 TLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVK 307 (1133)
Q Consensus 228 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 307 (1133)
..|..++++++|++|++++|+++++.+..|.++++|++|+|++|++++..+..+
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------------- 149 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-------------------------- 149 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT--------------------------
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc--------------------------
Confidence 888889999999999999999988777788888888888888888875322111
Q ss_pred CCCCCccccccEEeccCCcccccCCchhhcccccc--eeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhcc
Q 001171 308 PPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLR--VMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAK 385 (1133)
Q Consensus 308 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 385 (1133)
..+.+|++|++++|+|+++.|..|..+++|+ .|++++|.+.+..|..|.. .+|++|++++|. ..+..+..
T Consensus 150 ----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~ 221 (606)
T 3t6q_A 150 ----FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKG 221 (606)
T ss_dssp ----CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHH
T ss_pred ----cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhh
Confidence 1244566666666666666677888888888 7888888888777666654 578888888886 23455556
Q ss_pred CCCccEEEccCCccc-----ccCCCccCCCC--CCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCC
Q 001171 386 CSLLQMFDLEGNRFS-----GQVPAFLGGIR--GLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRL 458 (1133)
Q Consensus 386 l~~L~~L~Ls~N~l~-----~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l 458 (1133)
+.++....+..+.+. ...+..+.++. +|+.|++++|.+++..+..|.++++|++|++++|+++ .+|..+..+
T Consensus 222 l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l 300 (606)
T 3t6q_A 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300 (606)
T ss_dssp TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC
T ss_pred ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc
Confidence 655555544433332 12233344433 7888999999998888888899999999999999988 677888889
Q ss_pred CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCC-CcCCcccccEEeccccCCCCCC--ChhccCCCCCcE
Q 001171 459 SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPG-SIGSLMRLTTLDLSNQNLSGEL--PIELFGLPSLQV 535 (1133)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~ 535 (1133)
++|++|++++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+.++++|++
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence 9999999999999887788888999999999999988866654 4888999999999999998665 778889999999
Q ss_pred eeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcc-cccccccceeecccCccCCCCCccccCCCCccEEEecCCc
Q 001171 536 VSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPAT-YGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNH 614 (1133)
Q Consensus 536 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 614 (1133)
|++++|++.+..|..|..+++|++|++++|++++..+.. +..+++|++|++++|.+++..|..++.+++|++|++++|+
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 999999999888999999999999999999998776644 8899999999999999998889999999999999999999
Q ss_pred ccCC---CccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccC
Q 001171 615 FTGN---IPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAI 691 (1133)
Q Consensus 615 l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 691 (1133)
+++. .+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..|.++++| .|+|++|++++..
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 9862 33568899999999999999998889999999999999999999999999999999999 9999999999988
Q ss_pred CccccccccCcccccccccccccCCcc
Q 001171 692 PADLALISSLRYLNLSRNNLEGEIPKM 718 (1133)
Q Consensus 692 p~~l~~l~~L~~L~ls~N~l~~~~p~~ 718 (1133)
|..+..+++|+.|++++|++.|.++..
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred HhhcccCCCCCEEeCCCCCccccCCcH
Confidence 888999999999999999999988743
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-57 Score=580.51 Aligned_cols=526 Identities=23% Similarity=0.235 Sum_probs=422.8
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCC-cccccCccccceEeccccccc
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEV-PASVGQLQELEYLWLDSNHLY 226 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~ 226 (1133)
.+++++.++ .+|. +|+++++|||++|.+++..|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|+++
T Consensus 9 ~dcs~~~L~-~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEESCCCSS-CCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEccCCCCC-CCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 344555555 3555 7889999999999999888999999999999999999777776 678999999999999999999
Q ss_pred CCCCccccCccccceeeccccccCCCCCCc--ccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccc
Q 001171 227 GTLPSAISNCSSLVHLSAEDNVLKGLIPGT--IGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTG 304 (1133)
Q Consensus 227 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~ 304 (1133)
+..|..|.++++|++|+|++|.+++.+|.. |..+++|++|+|++|++++..+... |+++++|+.|++++|.+++
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~----~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS----FGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG----GGTCSSCCEEEEESSCCCC
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh----HhhCCCCCEEECCCCcCCe
Confidence 888999999999999999999998866554 8899999999999999987654322 3666666666666666554
Q ss_pred cccCCCCCccccccEEeccCCcccccCCchhhcc--cccceeeccCceeecccCcccCCCCC------CcEEEccCCccc
Q 001171 305 VVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNV--TSLRVMDLSGNFFSGNLPAAVGSLDK------LEVLRVANNSLS 376 (1133)
Q Consensus 305 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~L~~n~l~ 376 (1133)
+.++.|..+ ++|+.|+|++|.+.+..|..++.+++ |++|++++|.++
T Consensus 163 -------------------------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 163 -------------------------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp -------------------------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred -------------------------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 335555555 66666666666666666655555544 677777777666
Q ss_pred ccCchhhccC---CCccEEEcc---------CCcccccCCCccCCC--CCCcEEEccCCcCccccCccccCccccceeec
Q 001171 377 GLVPDEIAKC---SLLQMFDLE---------GNRFSGQVPAFLGGI--RGLKIVSLGRNMFSGLIPLSFGNLSQLETLNL 442 (1133)
Q Consensus 377 ~~~~~~~~~l---~~L~~L~Ls---------~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 442 (1133)
+..+..+... .+++.|+++ .|.+.+..+..|.++ ++|+.|+|++|.+.+..+..|..+++|+.|+|
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 297 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence 6555554432 456666655 334444445555554 68999999999999888888999999999999
Q ss_pred ccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCC
Q 001171 443 SENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGE 522 (1133)
Q Consensus 443 ~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 522 (1133)
++|+|++..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~- 376 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT- 376 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-
Confidence 9999998888889999999999999999988888899999999999999999988888889999999999999999884
Q ss_pred CChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCC-cccccccccceeecccCccCCCCCc-ccc
Q 001171 523 LPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIP-ATYGFLRSLVFLSLSHNQISGMIPA-ELG 600 (1133)
Q Consensus 523 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~ 600 (1133)
++ .+++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+..+++|++|+|++|++++..+. .+.
T Consensus 377 i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 377 IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 22 3788999999999998 44443 4678999999999986433 3456889999999999999865443 356
Q ss_pred CCCCccEEEecCCccc-----CCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcc
Q 001171 601 ACSALEVLELRSNHFT-----GNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLS 675 (1133)
Q Consensus 601 ~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 675 (1133)
.+++|++|+|++|.++ +..+..+..+++|+.|+|++|.|++..|..+..+++|+.|+|++|++++..+..+. +
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence 6899999999999997 34456688999999999999999998888999999999999999999987777766 8
Q ss_pred cccccccccccccccCCccccccccCcccccccccccccCCcc
Q 001171 676 NLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIPKM 718 (1133)
Q Consensus 676 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 718 (1133)
+|+.|||++|++++.+|..+ .+|+.|++++|++.|.++..
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred cccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 99999999999999988775 47899999999999988753
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-57 Score=561.72 Aligned_cols=535 Identities=23% Similarity=0.255 Sum_probs=425.8
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccC
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYG 227 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 227 (1133)
++++++.++ .+|..+++++++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++
T Consensus 16 ~~c~~~~l~-~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp EECTTSCCS-SCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred eEccCCCcc-cCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 444455544 5667778899999999999999888899999999999999999998888899999999999999999998
Q ss_pred CCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccC-CcccccccCcccccccccEEeccCCcccccc
Q 001171 228 TLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTG-LVPVSVLCNLWGNISSLRIVQLGFNAFTGVV 306 (1133)
Q Consensus 228 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 306 (1133)
..|..|+++++|++|++++|++++..+..|+++++|++|+|++|++++ .+|..+ +++++|++|++++|.+++..
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-----~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-----SNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-----GTCTTCCEEECCSSCCCEEC
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-----hhcCCCCEEEccCCcceecC
Confidence 889999999999999999999998888889999999999999999986 456554 77777777777777776643
Q ss_pred cCCCCCcccccc----EEeccCCcccccCCchhhcccccceeeccCceee-cccCcccCCCCCCcEEEccCCcccccCch
Q 001171 307 KPPNGRCVSVLE----VLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFS-GNLPAAVGSLDKLEVLRVANNSLSGLVPD 381 (1133)
Q Consensus 307 ~~~~~~~~~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 381 (1133)
+..+..+..|+ +|++++|.++.+.+..+... +|++|++++|.+. +..|..+++++.|+.+++..+.+.+.
T Consensus 170 -~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--- 244 (606)
T 3vq2_A 170 -VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--- 244 (606)
T ss_dssp -TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS---
T ss_pred -hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC---
Confidence 12222222222 45555555555444444333 4555555555443 23344444444444444443332211
Q ss_pred hhccCCCccEEEccCCcccccCCCccCCCC--CCcEEEc-cCCcCccccCccccCccccceeecccccccccCChhhcCC
Q 001171 382 EIAKCSLLQMFDLEGNRFSGQVPAFLGGIR--GLKIVSL-GRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRL 458 (1133)
Q Consensus 382 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L-~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l 458 (1133)
+.+....+..+.++. .++.+++ ..|.+++.+|. +..+++|+.|++++|.+.. +| .+..+
T Consensus 245 ---------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~ 306 (606)
T 3vq2_A 245 ---------------RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKH 306 (606)
T ss_dssp ---------------CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTT
T ss_pred ---------------CcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hcccc
Confidence 001111112222222 4556666 67778877776 8888899999999988874 45 78888
Q ss_pred CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCC--CChhccCCCCCcEe
Q 001171 459 SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGE--LPIELFGLPSLQVV 536 (1133)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L 536 (1133)
++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|++++. .|..+..+++|++|
T Consensus 307 ~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred ccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 8999999999998 4677 45 8899999999999655443 677899999999999999865 48889999999999
Q ss_pred eccCCcccccCCCCCCCCccCcEEEcccccccCCCC-cccccccccceeecccCccCCCCCccccCCCCccEEEecCCcc
Q 001171 537 SLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIP-ATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHF 615 (1133)
Q Consensus 537 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 615 (1133)
++++|.+++ +|..|..+++|++|++++|++++..+ ..+..+++|++|++++|++++..|..++.+++|++|++++|++
T Consensus 382 ~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 999999985 56889999999999999999998877 6889999999999999999999999999999999999999999
Q ss_pred cCC-CccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcc
Q 001171 616 TGN-IPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPAD 694 (1133)
Q Consensus 616 ~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 694 (1133)
++. +|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..|.++++|+.|||++|+++ .+|..
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 974 7888999999999999999999988999999999999999999999999999999999999999999998 68888
Q ss_pred ccccc-cCcccccccccccccCCcc
Q 001171 695 LALIS-SLRYLNLSRNNLEGEIPKM 718 (1133)
Q Consensus 695 l~~l~-~L~~L~ls~N~l~~~~p~~ 718 (1133)
+..++ +|++|++++|++.|.++..
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred HhhhcccCcEEEccCCCcccCCccH
Confidence 98987 5999999999999988864
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-56 Score=555.96 Aligned_cols=520 Identities=19% Similarity=0.181 Sum_probs=367.3
Q ss_pred cCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccCCcceEEEccCC
Q 001171 96 ELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSN 175 (1133)
Q Consensus 96 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N 175 (1133)
.+++|||++|++++..|..|+++++|+.|+|++|++++..|..|.++++| ++|+|++|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L----------------------~~L~Ls~n 91 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL----------------------DTLVLTAN 91 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTC----------------------CEEECTTC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcccc----------------------CeeeCCCC
Confidence 57788888888877667777788888888888877776666666666544 55666666
Q ss_pred cCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeeccccccCCCCCC
Q 001171 176 AFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPG 255 (1133)
Q Consensus 176 ~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 255 (1133)
++++..|..|+.+++|++|++++|++++..|..++.+++|++|++++|++++..+..+.++++|++|++++|++++..|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 66667777788888888888888888866566777788888888888877753333344477777777777777776666
Q ss_pred cccCcCccc--EEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCc
Q 001171 256 TIGRISTLQ--VLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPS 333 (1133)
Q Consensus 256 ~~~~l~~L~--~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 333 (1133)
.|+.+++|+ .|++++|++++..|..+ ...+|+ +|++++|.. .+.
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~------~~~~L~-------------------------~L~l~~~~~---~~~ 217 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAF------DSAVFQ-------------------------SLNFGGTQN---LLV 217 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTT------TTCEEE-------------------------EEECTTCSC---HHH
T ss_pred hhhhhcccceeEEecCCCccCccChhHh------hhcccc-------------------------ccccCCchh---HHH
Confidence 777777777 77777777765544322 113344 444444431 134
Q ss_pred hhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCC--CccEEEccCCcccccCCCccCCCC
Q 001171 334 WLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCS--LLQMFDLEGNRFSGQVPAFLGGIR 411 (1133)
Q Consensus 334 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~ 411 (1133)
.+..+.++....+.-+.+. .+....+.. ..+..+. +|+.|++++|.+++..+..|++++
T Consensus 218 ~~~~l~~~~l~~l~~~~~~-----------~~~~~~i~~--------~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFE-----------DMDDEDISP--------AVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp HHHHTTTCEEEEEECCCCT-----------TSCCCCCCG--------GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred Hhhhccccchhheechhhc-----------cccccccCh--------hHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 4555554444333322221 111111111 1222221 566666666666666666666666
Q ss_pred CCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCC-CCCCCCCCcEEEc
Q 001171 412 GLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPY-DVGNLKGLLVLNL 490 (1133)
Q Consensus 412 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L 490 (1133)
+|++|++++|.++ .+|..+.++++|++|++++|++++..|..+..+++|++|++++|.+.+.++. .+..+++|++|++
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 6666666666666 4566666777777777777777766666677777777777777776655544 3677777777777
Q ss_pred ccCCCcccc--CCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCC-CCCCCccCcEEEcccccc
Q 001171 491 SASGFSGKI--PGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPE-GFSSLVGLQYLNLSDNAF 567 (1133)
Q Consensus 491 ~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l 567 (1133)
++|.+++.. +..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+. .|..+++|++|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 777777655 66777777888888888877777777777788888888888888766544 477888888888888888
Q ss_pred cCCCCcccccccccceeecccCccCCC---CCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCc
Q 001171 568 TGDIPATYGFLRSLVFLSLSHNQISGM---IPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIP 644 (1133)
Q Consensus 568 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 644 (1133)
++..|..++.+++|++|++++|++++. .+..+..+++|++|++++|++++..|..+..+++|+.|+|++|++++..|
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 877788888888888888888888752 33567888889999999998888778888888999999999999988888
Q ss_pred hhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCC
Q 001171 645 KEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIP 692 (1133)
Q Consensus 645 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 692 (1133)
..+..++.| .|++++|++++.+|..|..+++|+.|++++|+++...+
T Consensus 518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 889999999 99999999998888888889999999999999886544
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-58 Score=570.34 Aligned_cols=494 Identities=19% Similarity=0.247 Sum_probs=309.6
Q ss_pred cCchhHHHHHHHHHHhCCCCCCC--------ccCCCCCCCCCCCcc---ceeeeCC-CceEEEeeCCcccCcccchhhcc
Q 001171 26 AVVLSEIQALTSFKLHLKDPLGA--------LDGWDSSTPSAPCDW---RGIVCYN-NRVRELRLPRLQLAGRLTDQLAD 93 (1133)
Q Consensus 26 ~~~~~~~~~l~~~k~~~~~~~~~--------l~~w~~~~~~~~c~w---~gv~c~~-~~v~~l~l~~~~l~g~~~~~l~~ 93 (1133)
+...+|++||.+||.++.+|.+. ..+|+.+ .+||.| .||+|+. ++|++|+|.+++++|.+|+++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence 33457999999999999766543 2479754 479999 9999975 69999999999999999999999
Q ss_pred cccCcEEEcccCcc------cC------CCCccccCCCCcceEeccCCcccCcCCCccc-cccchhhhhhcccccCCCcc
Q 001171 94 LHELRKLSLHSNHL------NG------SIPASLHQCSLLRAVYLQYNSFSGHLPLSIF-NLTNLLVLNVAHNLLSGKIS 160 (1133)
Q Consensus 94 l~~L~~L~l~~n~l------~~------~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~-~l~~L~~L~l~~N~l~~~~~ 160 (1133)
|++|++|+|++|++ .| .+|... +..|+ +++++|.+.+.+|..+. .+.++..+++....+..
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~--- 177 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK--- 177 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC---
T ss_pred CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc---
Confidence 99999999999987 33 445444 56677 88888888888887765 34455555555443321
Q ss_pred CccCCcceEEEc--cCCcCCCCCCCCCCCCCcCcEEeccCCcCCCC-----------------Cccccc--CccccceEe
Q 001171 161 ADISPSLRYLDL--SSNAFTGEIPGNFSSKSQLQLINLSYNSFSGE-----------------VPASVG--QLQELEYLW 219 (1133)
Q Consensus 161 ~~~~~~l~~L~L--s~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~-----------------~p~~~~--~l~~L~~L~ 219 (1133)
.....++.+++ .+|+++| +|..|+++++|++|+|++|+++|. +|..++ ++++|++|+
T Consensus 178 -~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 -SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp -CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred -ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 11122333333 3577777 777788888888888888888875 777777 777788888
Q ss_pred cccccccCCCCccccCccccceeeccccc-cCC-CCCCcccCc------CcccEEEcccCCccCCccc--ccccCccccc
Q 001171 220 LDSNHLYGTLPSAISNCSSLVHLSAEDNV-LKG-LIPGTIGRI------STLQVLSLSRNELTGLVPV--SVLCNLWGNI 289 (1133)
Q Consensus 220 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~-l~~-~~~~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~~~~~~l 289 (1133)
|++|++.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|. .+ +++
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-----~~l 329 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-----QKM 329 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-----TTC
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-----ccC
Confidence 87777777777777777777777777777 776 666666665 77777777777777 5554 44 666
Q ss_pred ccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCC-CcEE
Q 001171 290 SSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDK-LEVL 368 (1133)
Q Consensus 290 ~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L 368 (1133)
++|+.|++++|.++|.+ | .|.++++|++|+|++|+++ .+|..++.+++ |++|
T Consensus 330 ~~L~~L~L~~N~l~g~i-------------------------p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKL-------------------------P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TTCCEEECCSCCCEEEC-------------------------C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCCEEeCcCCcCccch-------------------------h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 66666666666666544 3 4444455555555555554 44444555544 5555
Q ss_pred EccCCcccccCchhhccCC--CccEEEccCCcccccCCCccC-------CCCCCcEEEccCCcCccccCccccCccccce
Q 001171 369 RVANNSLSGLVPDEIAKCS--LLQMFDLEGNRFSGQVPAFLG-------GIRGLKIVSLGRNMFSGLIPLSFGNLSQLET 439 (1133)
Q Consensus 369 ~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 439 (1133)
++++|+++ .+|..+..++ +|++|+|++|++++.+|..+. .+++|+.|+|++|.++...+..+..+++|++
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 55555554 3344443332 455555555555555555444 4445555555555555333333444555555
Q ss_pred eecccccccccCChhhcCC-------CCCcEEecccCcCCCCCCCCCC--CCCCCcEEEcccCCCccccCCCcCCccccc
Q 001171 440 LNLSENDIRGNIPEEITRL-------SNLTTLNLSYNKFGGKVPYDVG--NLKGLLVLNLSASGFSGKIPGSIGSLMRLT 510 (1133)
Q Consensus 440 L~L~~N~i~~~~~~~l~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 510 (1133)
|+|++|+++...+..+... ++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 5555555552222222222 25666666666666 4555554 56666666666666665 566666666666
Q ss_pred EEecc------ccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEccccccc
Q 001171 511 TLDLS------NQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFT 568 (1133)
Q Consensus 511 ~L~Ls------~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 568 (1133)
+|+++ +|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|+|++|++.
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 66664 4444555555555555555555555555 23343333 44555555555444
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-57 Score=569.15 Aligned_cols=498 Identities=18% Similarity=0.223 Sum_probs=318.2
Q ss_pred ccCchhHHHHHHHHHHhCCCCCCCccCCCCCC---CCCC--Ccc------------ceeeeCC-CceEEEeeCCcccCcc
Q 001171 25 NAVVLSEIQALTSFKLHLKDPLGALDGWDSST---PSAP--CDW------------RGIVCYN-NRVRELRLPRLQLAGR 86 (1133)
Q Consensus 25 ~~~~~~~~~~l~~~k~~~~~~~~~l~~w~~~~---~~~~--c~w------------~gv~c~~-~~v~~l~l~~~~l~g~ 86 (1133)
.++..+|++||++||+++.|| +|+.++ ..+| |.| .||+|+. ++|++|+|.+++|+|.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCc
Confidence 345568999999999999887 786554 2345 999 9999984 8999999999999999
Q ss_pred cchhhcccccCcEEEc-ccCcccCCCCcccc-------------------------------------------------
Q 001171 87 LTDQLADLHELRKLSL-HSNHLNGSIPASLH------------------------------------------------- 116 (1133)
Q Consensus 87 ~~~~l~~l~~L~~L~l-~~n~l~~~~p~~~~------------------------------------------------- 116 (1133)
+|+++++|++|+.||| ++|.++|..|....
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 89999887553311
Q ss_pred --CCCCcceEeccC--CcccCcCCCccccccchhhhhhcccccCC-CccCccCCcceEEEccCCcCCCCCCCCCC--CCC
Q 001171 117 --QCSLLRAVYLQY--NSFSGHLPLSIFNLTNLLVLNVAHNLLSG-KISADISPSLRYLDLSSNAFTGEIPGNFS--SKS 189 (1133)
Q Consensus 117 --~l~~L~~L~L~~--n~~~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~--~l~ 189 (1133)
....++.+.++. |+++| +|.+++++++|++|+|++|.|++ .++..+.+ ++.|.++|.+|..++ +++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~------~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED------ANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC------TTSHHHHHHTTSCCCGGGCT
T ss_pred cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc------cccccccccCChhhhhccCC
Confidence 112233334433 67776 77777777777777777777765 33333221 233555567898887 999
Q ss_pred cCcEEeccCCcCCCCCcccccCccccceEeccccc-ccC-CCCccccCcc-------ccceeeccccccCCCCCC--ccc
Q 001171 190 QLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNH-LYG-TLPSAISNCS-------SLVHLSAEDNVLKGLIPG--TIG 258 (1133)
Q Consensus 190 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l~-------~L~~L~l~~N~l~~~~~~--~~~ 258 (1133)
+|++|+|++|++.+.+|..++++++|++|+|++|+ ++| .+|..+.+++ +|++|++++|+++ .+|. .|+
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 99999999999999999999999999999999998 887 7887776665 8888888888888 5666 788
Q ss_pred CcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcc
Q 001171 259 RISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNV 338 (1133)
Q Consensus 259 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 338 (1133)
++++|+.|+|++|+++ .+| .+ +++++|+.|++++|.++. + |..+.++
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~-----~~L~~L~~L~Ls~N~l~~-l-------------------------p~~l~~l 617 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AF-----GTNVKLTDLKLDYNQIEE-I-------------------------PEDFCAF 617 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CC-----CTTSEESEEECCSSCCSC-C-------------------------CTTSCEE
T ss_pred cCCCCCEEECCCCCcc-cch-hh-----cCCCcceEEECcCCcccc-c-------------------------hHHHhhc
Confidence 8888888888888887 555 22 566666666666666552 1 3444555
Q ss_pred cc-cceeeccCceeecccCcccCCCCC--CcEEEccCCcccccCchhh---c--cCCCccEEEccCCcccccCCCccCCC
Q 001171 339 TS-LRVMDLSGNFFSGNLPAAVGSLDK--LEVLRVANNSLSGLVPDEI---A--KCSLLQMFDLEGNRFSGQVPAFLGGI 410 (1133)
Q Consensus 339 ~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~Ls~N~l~~~~p~~l~~l 410 (1133)
++ |++|+|++|.|+ .+|..+..++. |+.|+|++|++++.+|... . .+++|+.|+|++|+++...+..+..+
T Consensus 618 ~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l 696 (876)
T 4ecn_A 618 TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696 (876)
T ss_dssp CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT
T ss_pred cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC
Confidence 55 555555555555 44444444432 5555555555544333211 1 22244555555555542222222344
Q ss_pred CCCcEEEccCCcCccccCccc-------cCccccceeecccccccccCChhhc--CCCCCcEEecccCcCCCCCCCCCCC
Q 001171 411 RGLKIVSLGRNMFSGLIPLSF-------GNLSQLETLNLSENDIRGNIPEEIT--RLSNLTTLNLSYNKFGGKVPYDVGN 481 (1133)
Q Consensus 411 ~~L~~L~L~~N~l~~~~p~~~-------~~l~~L~~L~L~~N~i~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~ 481 (1133)
++|+.|+|++|.++...+..+ .++++|++|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|..+..
T Consensus 697 ~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~ 774 (876)
T 4ecn_A 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN 774 (876)
T ss_dssp CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc
Confidence 444444444444442211111 22336666666666666 4555554 56666666666666664 4555555
Q ss_pred CCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEE
Q 001171 482 LKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLN 561 (1133)
Q Consensus 482 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 561 (1133)
+++|+.|+|++|+ ++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|+
T Consensus 775 L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 775 SSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILD 833 (876)
T ss_dssp CTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEE
T ss_pred CCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEE
Confidence 5666666655543 3445666666666666666666666666666 34555443 4666666
Q ss_pred cccccccCCCCcccccccccceeecccCccC
Q 001171 562 LSDNAFTGDIPATYGFLRSLVFLSLSHNQIS 592 (1133)
Q Consensus 562 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1133)
|++|++....+..+.....+..+.|.+|++.
T Consensus 834 Ls~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCCCCccChHHccccccchheeecCCCcc
Confidence 6666665544444444444555555555443
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-55 Score=544.57 Aligned_cols=512 Identities=20% Similarity=0.179 Sum_probs=336.3
Q ss_pred ccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccC--CcceEEEc
Q 001171 95 HELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADIS--PSLRYLDL 172 (1133)
Q Consensus 95 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~l~~L~L 172 (1133)
++|++|+|++|++++..|..|.++++|+.|+|++|++++..|.+|.++++|++|++++|.+++..|..+. ++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 7899999999999988888899999999999999999987788899999998888888888877676663 77888888
Q ss_pred cCCcCCCCCCCCCCCCCcCcEEeccCCcCCC-CCcccccCccccceEecccccccCCCCccccCccccc----eeecccc
Q 001171 173 SSNAFTGEIPGNFSSKSQLQLINLSYNSFSG-EVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLV----HLSAEDN 247 (1133)
Q Consensus 173 s~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~l~~N 247 (1133)
++|.+++..|..|+++++|++|++++|++++ .+|..++++++|++|++++|++++..|..+.++++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 8888887777778888888888888888875 5688888888888888888888877777777777665 6888888
Q ss_pred ccCCCCCCcccCcCcccEEEcccCCccC-CcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCc
Q 001171 248 VLKGLIPGTIGRISTLQVLSLSRNELTG-LVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNR 326 (1133)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 326 (1133)
.++++.+..+... +|+.|++++|.+++ .+|..+ .++++|+.+++..+.+.+.. .
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~-----~~l~~L~~l~l~~~~~~~~~-------------------~ 246 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCL-----QNLAGLHVHRLILGEFKDER-------------------N 246 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHH-----HTTTTCEEEEEEEECCTTSC-------------------C
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHh-----ccccccccccccccccccCC-------------------c
Confidence 8887766666555 78888888887763 233333 67777777777665554321 1
Q ss_pred ccccCCchhhccc--ccceeec-cCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccC
Q 001171 327 IRAVFPSWLTNVT--SLRVMDL-SGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQV 403 (1133)
Q Consensus 327 i~~~~~~~~~~l~--~L~~L~L-s~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 403 (1133)
+..+.+..+..+. +++.+++ ..|.+.+.+|. +..+++|+.|++++|.+... | .+..+++|++|++++|.+ +.+
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-ccc
Confidence 1112222233222 3445555 56666666665 66677777777777777543 3 566667777777777777 455
Q ss_pred CCccCCCCCCcEEEccCCcCccccCccccCccccceeeccccccccc--CChhhcCCCCCcEEecccCcCCCCCCCCCCC
Q 001171 404 PAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGN--IPEEITRLSNLTTLNLSYNKFGGKVPYDVGN 481 (1133)
Q Consensus 404 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 481 (1133)
|. + .+++|+.|++++|...+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+++ +|..+..
T Consensus 323 p~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~ 397 (606)
T 3vq2_A 323 PT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG 397 (606)
T ss_dssp CC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTT
T ss_pred cc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccC
Confidence 53 3 6677777777777544332 555677777777777777654 26666667777777777766653 3355555
Q ss_pred CCCCcEEEcccCCCccccC-CCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEE
Q 001171 482 LKGLLVLNLSASGFSGKIP-GSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYL 560 (1133)
Q Consensus 482 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 560 (1133)
+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..| ..|.++++|++|
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L 453 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD------------------------GIFLGLTSLNTL 453 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT------------------------TTTTTCTTCCEE
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch------------------------hhhcCCCCCCEE
Confidence 5555555555555554444 344455555555555555544444 444444444445
Q ss_pred EcccccccC-CCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcc
Q 001171 561 NLSDNAFTG-DIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKL 639 (1133)
Q Consensus 561 ~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 639 (1133)
++++|++++ .+|..++.+++|++|+|++|++++..|..++.+++|++|+|++|++++..|..+..+++|+.|+|++|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 554554444 2344455555555555555555555555555555555555555555554555555555666666666666
Q ss_pred cCcCchhhhccC-CCcEEEeecCCCCc
Q 001171 640 SGEIPKEISKCS-SLVSLTLDMNSLSG 665 (1133)
Q Consensus 640 ~~~~p~~l~~l~-~L~~L~Ls~N~l~~ 665 (1133)
+ .+|..+..++ +|+.|++++|.+..
T Consensus 534 ~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 534 E-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp C-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred c-ccCHhHhhhcccCcEEEccCCCccc
Confidence 5 4555555554 36666666666654
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-54 Score=555.86 Aligned_cols=510 Identities=24% Similarity=0.247 Sum_probs=436.1
Q ss_pred eEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCC-CccccCccccceeeccc
Q 001171 168 RYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTL-PSAISNCSSLVHLSAED 246 (1133)
Q Consensus 168 ~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~ 246 (1133)
+..|.++++++. +|. -.++|++|||++|++++..|..|+.+++|++|+|++|.+.+.+ |..|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 567889999985 455 4578999999999999888999999999999999999776666 77899999999999999
Q ss_pred cccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCc
Q 001171 247 NVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNR 326 (1133)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 326 (1133)
|++++..|..|.++++|++|+|++|.+++.+|... .++++++|+.|++++|.++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~~L~~L~~L~Ls~N~l~----------------------- 136 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG---YFRNLKALTRLDLSKNQIR----------------------- 136 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC---CCSSCSSCCEEEEESCCCC-----------------------
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCc---cccccCCCCEEECCCCccc-----------------------
Confidence 99999989999999999999999999987655431 1255555555555555554
Q ss_pred ccccC-CchhhcccccceeeccCceeecccCcccCCC--CCCcEEEccCCcccccCchhhccCCC------ccEEEccCC
Q 001171 327 IRAVF-PSWLTNVTSLRVMDLSGNFFSGNLPAAVGSL--DKLEVLRVANNSLSGLVPDEIAKCSL------LQMFDLEGN 397 (1133)
Q Consensus 327 i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~Ls~N 397 (1133)
++. +..|.++++|++|+|++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+++ |++|+|++|
T Consensus 137 --~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 137 --SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp --CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred --ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 433 3679999999999999999999999999888 89999999999999988887777766 999999999
Q ss_pred cccccCCCccCCC---CCCcEEEccC---------CcCccccCccccCc--cccceeecccccccccCChhhcCCCCCcE
Q 001171 398 RFSGQVPAFLGGI---RGLKIVSLGR---------NMFSGLIPLSFGNL--SQLETLNLSENDIRGNIPEEITRLSNLTT 463 (1133)
Q Consensus 398 ~l~~~~p~~l~~l---~~L~~L~L~~---------N~l~~~~p~~~~~l--~~L~~L~L~~N~i~~~~~~~l~~l~~L~~ 463 (1133)
.+++..+..+... ..++.+.++. +.+.+..+..|..+ ++|+.|++++|.+.+..+..|..+++|+.
T Consensus 215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 9998888877643 5788888873 34444455566665 78999999999999999999999999999
Q ss_pred EecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcc
Q 001171 464 LNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNL 543 (1133)
Q Consensus 464 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 543 (1133)
|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..|.++++|++|+|++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 99999999999999999999999999999999998899999999999999999999988888899999999999999999
Q ss_pred cccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCC-ccccCCCCccEEEecCCcccCCCcc-
Q 001171 544 SGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIP-AELGACSALEVLELRSNHFTGNIPV- 621 (1133)
Q Consensus 544 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~- 621 (1133)
++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+..+++|++|+|++|++++..+.
T Consensus 375 ~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 375 TTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred Ccc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 843 33889999999999998 45543 5679999999999996432 3456899999999999999965433
Q ss_pred ccccccccCeeecCCCccc-----CcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcccc
Q 001171 622 DISHLSRIKKLDLGQNKLS-----GEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLA 696 (1133)
Q Consensus 622 ~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 696 (1133)
.+..+++|+.|+|++|.++ +..+..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..|..+.
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 3566899999999999997 44556788999999999999999999999999999999999999999987666665
Q ss_pred ccccCcccccccccccccCCcccc
Q 001171 697 LISSLRYLNLSRNNLEGEIPKMLS 720 (1133)
Q Consensus 697 ~l~~L~~L~ls~N~l~~~~p~~~~ 720 (1133)
++|+.|||++|++++.+|..+.
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCCS
T ss_pred --ccccEEECCCCcCCCCChhHhC
Confidence 8999999999999999997653
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-51 Score=506.76 Aligned_cols=513 Identities=23% Similarity=0.254 Sum_probs=364.1
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccC
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYG 227 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 227 (1133)
+++++..++ .+|..+|+++++|||++|++++..+..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++
T Consensus 12 ~~c~~~~l~-~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp EECCSSCCS-SCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEeCCCCcc-ccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc
Confidence 334444443 5677788889999999999998888899999999999999999998777889999999999999999987
Q ss_pred CCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCC-cccccccCcccccccccEEeccCCcccccc
Q 001171 228 TLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGL-VPVSVLCNLWGNISSLRIVQLGFNAFTGVV 306 (1133)
Q Consensus 228 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 306 (1133)
..|..|.++++|++|++++|+++++.+..|+++++|++|+|++|++++. +|..+ +++++|+.|++++|.+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-----~~l~~L~~L~l~~n~l---- 161 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKI---- 161 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECTTSCC----
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-----cccCCCCEEeCcCCcc----
Confidence 7778899999999999999999988777789999999999999988762 45444 5555555555555444
Q ss_pred cCCCCCccccccEEeccCCcccccCCchhhccccc----ceeeccCceeecccCcccCCCCCCcEEEccCCcccc-cCch
Q 001171 307 KPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSL----RVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSG-LVPD 381 (1133)
Q Consensus 307 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~ 381 (1133)
+++.+..|..+++| +.|++++|.+.+..|..|..+ +|++|++++|.... ..+.
T Consensus 162 ---------------------~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 162 ---------------------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp ---------------------CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH
T ss_pred ---------------------ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh
Confidence 44446667777777 677777777777666666655 67777777774432 2355
Q ss_pred hhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCcc--ccceeecccc-cccccCChhhcCC
Q 001171 382 EIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLS--QLETLNLSEN-DIRGNIPEEITRL 458 (1133)
Q Consensus 382 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N-~i~~~~~~~l~~l 458 (1133)
.+..++.++.+++..+.+... ..++ ......+..+. .++.+++++| .+.+..+..+..+
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~--------~~l~----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l 281 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNE--------GNLE----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCC--------SSCE----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG
T ss_pred hhcCccccceeeeccccccCc--------hhhh----------hcchhhhccccccchhhhhhhcchhhhhhchhhhcCc
Confidence 566667776666554333210 1111 01111122221 2445555555 4555555566666
Q ss_pred CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeec
Q 001171 459 SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSL 538 (1133)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 538 (1133)
++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 66666666666665 355555555 6666666666665 3332 3456666666666666654443 55666777777
Q ss_pred cCCcccccC--CCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCC-ccccCCCCccEEEecCCcc
Q 001171 539 EENNLSGDV--PEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIP-AELGACSALEVLELRSNHF 615 (1133)
Q Consensus 539 ~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l 615 (1133)
++|++++.. +..+.++++|++|++++|.+++..+. +..+++|++|++++|++++..| ..+..+++|++|++++|++
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 777666443 45566677777777777777654433 7777777777777777776555 4567778888888888888
Q ss_pred cCCCccccccccccCeeecCCCccc-CcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcc
Q 001171 616 TGNIPVDISHLSRIKKLDLGQNKLS-GEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPAD 694 (1133)
Q Consensus 616 ~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 694 (1133)
++..|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 7777777788888888888888887 467888888888888888888888877888888888888888888888877777
Q ss_pred ccccccCcccccccccccccCCcc
Q 001171 695 LALISSLRYLNLSRNNLEGEIPKM 718 (1133)
Q Consensus 695 l~~l~~L~~L~ls~N~l~~~~p~~ 718 (1133)
+..+++|+.|++++|+++|.+|..
T Consensus 514 ~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhcccCCcEEEecCCcccCCCcch
Confidence 888888888899999888888853
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-50 Score=491.71 Aligned_cols=494 Identities=20% Similarity=0.211 Sum_probs=306.7
Q ss_pred ccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCcc--CCcceEEEc
Q 001171 95 HELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADI--SPSLRYLDL 172 (1133)
Q Consensus 95 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L~L 172 (1133)
++++.|||++|++++..+..|.++++|+.|+|++|++++..|..+.++++|++|++++|.+++..+..+ .++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 578999999999998778889999999999999999997777789999999888888888876555544 367888888
Q ss_pred cCCcCCCCCCCCCCCCCcCcEEeccCCcCCC-CCcccccCccccceEecccccccCCCCccccCcccc----ceeecccc
Q 001171 173 SSNAFTGEIPGNFSSKSQLQLINLSYNSFSG-EVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSL----VHLSAEDN 247 (1133)
Q Consensus 173 s~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L~l~~N 247 (1133)
++|++++..+..|+++++|++|++++|++++ .+|..++++++|++|++++|++++..|..+..+++| ++|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8888887666668888888888888888876 468888888888888888888877667777777777 78888888
Q ss_pred ccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcc
Q 001171 248 VLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRI 327 (1133)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i 327 (1133)
.++++.|..|..+ +|+.|++++|...... +...+.++++++.+.+..+.+... +.+
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~----~~~~~~~l~~l~~~~l~~~~~~~~-------------------~~l 243 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNV----MKTCIQGLAGLEVHRLVLGEFRNE-------------------GNL 243 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTH----HHHHHHTTTTCEEEEEEEEECCCC-------------------SSC
T ss_pred CceecCHHHhccC-cceeEecccccccccc----hhhhhcCccccceeeeccccccCc-------------------hhh
Confidence 8887777777665 7888888887543211 111224556666555543332211 111
Q ss_pred cccCCchhhcccc--cceeeccCc-eeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCC
Q 001171 328 RAVFPSWLTNVTS--LRVMDLSGN-FFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVP 404 (1133)
Q Consensus 328 ~~~~~~~~~~l~~--L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 404 (1133)
..+....|..+.+ ++.+++++| .+.+..|..+..+++|++|++++|.++. +|+.+..+ +|++|++++|.+. .+|
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~ 320 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFP 320 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccC
Confidence 2222233333322 334455554 4455555555555555555555555552 34444444 5555555555555 233
Q ss_pred CccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccC--ChhhcCCCCCcEEecccCcCCCCCCCCCCCC
Q 001171 405 AFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNI--PEEITRLSNLTTLNLSYNKFGGKVPYDVGNL 482 (1133)
Q Consensus 405 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 482 (1133)
. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+. +..+
T Consensus 321 ~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l 395 (570)
T 2z63_A 321 T--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL 395 (570)
T ss_dssp B--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC
T ss_pred c--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cccc
Confidence 2 2445555555555555544333 45556666666666655433 45555566666666666655533222 5555
Q ss_pred CCCcEEEcccCCCccccC-CCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCccc-ccCCCCCCCCccCcEE
Q 001171 483 KGLLVLNLSASGFSGKIP-GSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLS-GDVPEGFSSLVGLQYL 560 (1133)
Q Consensus 483 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 560 (1133)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+.++++|++|++++|.++ +.+|..|..+++|++|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 555555555555554433 34555555555555555555555555555555555555555554 3455555555566666
Q ss_pred EcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCc
Q 001171 561 NLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIP 620 (1133)
Q Consensus 561 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 620 (1133)
+|++|++++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|++++..|
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 666665555555555555555555555555555555555555555555555555554433
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-50 Score=502.38 Aligned_cols=460 Identities=18% Similarity=0.251 Sum_probs=328.0
Q ss_pred ccCcEEEcccCcccCCCCccccCCCCcceEeccCCcc------cC------cCCCccccccchhhhhhcccccCCCccCc
Q 001171 95 HELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSF------SG------HLPLSIFNLTNLLVLNVAHNLLSGKISAD 162 (1133)
Q Consensus 95 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~------~g------~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 162 (1133)
.+++.|+|++|++.|.+|.++++|++|+.|+|++|.+ .| .+|... +.+|+ +++++|.+.+.++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4678999999999999999999999999999999987 34 455544 67788 999999999888877
Q ss_pred cC---CcceEEEccCCcCCCCCCCCCCCCCcCcEEec--cCCcCCCCCcccccCccccceEecccccccCC---------
Q 001171 163 IS---PSLRYLDLSSNAFTGEIPGNFSSKSQLQLINL--SYNSFSGEVPASVGQLQELEYLWLDSNHLYGT--------- 228 (1133)
Q Consensus 163 ~~---~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~l--s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--------- 228 (1133)
+. ..+..+++....+.. .....++.+.+ ..|+++| ||..++++++|++|+|++|+++|.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 75 344555555444431 12223333333 3689998 999999999999999999999985
Q ss_pred --------CCcccc--CccccceeeccccccCCCCCCcccCcCcccEEEcccCC-ccC-CcccccccCcccccccccEEe
Q 001171 229 --------LPSAIS--NCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNE-LTG-LVPVSVLCNLWGNISSLRIVQ 296 (1133)
Q Consensus 229 --------~p~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~~~~~~l~~L~~l~ 296 (1133)
+|..++ ++++|++|++++|++.+.+|..|+++++|++|+|++|+ ++| .+|..+ +++.
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-----~~L~------ 299 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-----QALA------ 299 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-----HHHH------
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-----Hhhh------
Confidence 899888 99999999999999999999999999999999999998 887 677655 3221
Q ss_pred ccCCcccccccCCCCCccccccEEeccCCcccccCCc--hhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCc
Q 001171 297 LGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPS--WLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNS 374 (1133)
Q Consensus 297 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 374 (1133)
....+++|++|++++|+++.+ |. .|.++++|++|+|++|+++|.+| .|+.+++|++|+|++|+
T Consensus 300 -------------~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 300 -------------DAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp -------------HSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred -------------ccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 011224456666666666644 55 78888999999999999988888 88888889999999998
Q ss_pred ccccCchhhccCCC-ccEEEccCCcccccCCCccCCCC--CCcEEEccCCcCccccCcccc-------Cccccceeeccc
Q 001171 375 LSGLVPDEIAKCSL-LQMFDLEGNRFSGQVPAFLGGIR--GLKIVSLGRNMFSGLIPLSFG-------NLSQLETLNLSE 444 (1133)
Q Consensus 375 l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L~~ 444 (1133)
++ .+|..+..+++ |++|+|++|+++ .+|..+..++ +|+.|++++|.+++.+|..|. .+++|++|++++
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 88 66777888888 899999988888 6777777654 788888888888888888777 677888888888
Q ss_pred ccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCC-CCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCC
Q 001171 445 NDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGN-LKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGEL 523 (1133)
Q Consensus 445 N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 523 (1133)
|+++...+..+..+++|++|+|++|+++ .+|..+.. .. ..+.++++|++|++++|+++ .+
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-cc
Confidence 8888544445556788888888888777 44433221 11 01223446666666666666 56
Q ss_pred Chhcc--CCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccc------cccCCCCcccccccccceeecccCccCCCC
Q 001171 524 PIELF--GLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDN------AFTGDIPATYGFLRSLVFLSLSHNQISGMI 595 (1133)
Q Consensus 524 p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 595 (1133)
|..+. .+++|++|+|++|++++ +|..+.++++|++|+|++| ++.+.+|..++.+++|++|+|++|++ +.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 66665 66666666666666665 5666666666666666544 44444444444444444444444444 233
Q ss_pred CccccCCCCccEEEecCCcc
Q 001171 596 PAELGACSALEVLELRSNHF 615 (1133)
Q Consensus 596 p~~l~~l~~L~~L~L~~N~l 615 (1133)
|..+. ++|++|+|++|++
T Consensus 582 p~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 582 NEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CSCCC--TTCCEEECCSCTT
T ss_pred CHhHh--CcCCEEECcCCCC
Confidence 43332 3444444444443
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-49 Score=485.67 Aligned_cols=491 Identities=18% Similarity=0.248 Sum_probs=274.2
Q ss_pred CCccceeeeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCcc
Q 001171 60 PCDWRGIVCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSI 139 (1133)
Q Consensus 60 ~c~w~gv~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l 139 (1133)
.|.|.|| |+.. +.+++ .+|+.+. ++|++|+|++|++++..|..++++++|+.|+|++|++++..|..+
T Consensus 3 ~C~~~~~-c~~~--------~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 70 (549)
T 2z81_A 3 SCDASGV-CDGR--------SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70 (549)
T ss_dssp EECTTSE-EECT--------TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT
T ss_pred cCCCCce-EECC--------CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc
Confidence 5999999 8631 11221 2333332 456666666666665555556666666666666665554444444
Q ss_pred ccccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCC-CCcccccCccccceE
Q 001171 140 FNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSG-EVPASVGQLQELEYL 218 (1133)
Q Consensus 140 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L 218 (1133)
.++++| ++|+|++|++++..|..|+.+++|++|+|++|++++ .+|..++.+++|++|
T Consensus 71 ~~l~~L----------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 71 YSLGSL----------------------EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCTTC----------------------CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred cccccC----------------------CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 444333 444444555554444455555666666666665554 244455555555555
Q ss_pred ecccccccCCCC-ccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEec
Q 001171 219 WLDSNHLYGTLP-SAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQL 297 (1133)
Q Consensus 219 ~L~~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l 297 (1133)
++++|++.+.+| ..+.++++|++|++++|++++..|..+..+++|++|++++|.+.. +|.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~------------------ 189 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLE------------------ 189 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHH------------------
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cch------------------
Confidence 555555333333 345555555555555555555555555555555555555555431 121
Q ss_pred cCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeeccc--C-cccCCCCCCcEEEccCCc
Q 001171 298 GFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNL--P-AAVGSLDKLEVLRVANNS 374 (1133)
Q Consensus 298 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p-~~~~~l~~L~~L~L~~n~ 374 (1133)
..+..+++|++|++++|++++.. | .....+++|+.|++++|.
T Consensus 190 -----------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 190 -----------------------------------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp -----------------------------------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred -----------------------------------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 11233444444444444444321 1 112234445555555554
Q ss_pred ccccCch----hhccCCCccEEEccCCcccccC------CCccCCCCCCcEEEccCCcCccccCccccCccccceeeccc
Q 001171 375 LSGLVPD----EIAKCSLLQMFDLEGNRFSGQV------PAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSE 444 (1133)
Q Consensus 375 l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 444 (1133)
+++..+. .+..+++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+.... .+.+
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~----------- 301 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFYD----------- 301 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSCC-----------
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh--hccc-----------
Confidence 4433222 2234455566666665554321 112233444555555554443210 0000
Q ss_pred ccccccCChhhcCCCCCcEEecccCcCCCCCCCCC-CCCCCCcEEEcccCCCcccc---CCCcCCcccccEEeccccCCC
Q 001171 445 NDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDV-GNLKGLLVLNLSASGFSGKI---PGSIGSLMRLTTLDLSNQNLS 520 (1133)
Q Consensus 445 N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~ 520 (1133)
.+..+....+|+.|++++|.++ .+|..+ ..+++|++|++++|++++.+ +..++.+++|++|++++|+++
T Consensus 302 ------l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 302 ------LSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp ------CCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred ------chhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 1111222344555555555554 333333 34555555555555555443 233556666666666666666
Q ss_pred CCCC--hhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCcc
Q 001171 521 GELP--IELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAE 598 (1133)
Q Consensus 521 ~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 598 (1133)
+..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+ .++|++|+|++|+|++.+
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~--- 447 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS--- 447 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC---
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc---
Confidence 4322 34666777777777777776 456667777777777777777763 33332 257888888888887542
Q ss_pred ccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCC
Q 001171 599 LGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIP 668 (1133)
Q Consensus 599 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 668 (1133)
..+++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 46788999999999888 5775 4678899999999999998888888999999999999999887654
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-49 Score=483.75 Aligned_cols=489 Identities=19% Similarity=0.205 Sum_probs=353.0
Q ss_pred eEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeecccc
Q 001171 168 RYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDN 247 (1133)
Q Consensus 168 ~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 247 (1133)
...|+++|.++ .+|..+. ++|++|+|++|++++..|..|+.+++|++|+|++|++++..|..+.++++|++|++++|
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 34677888887 4555543 67888888888888777777888888888888888887777777888888888888888
Q ss_pred ccCCCCCCcccCcCcccEEEcccCCccCC-cccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCc
Q 001171 248 VLKGLIPGTIGRISTLQVLSLSRNELTGL-VPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNR 326 (1133)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 326 (1133)
++++.+|..|+++++|++|+|++|++++. +|.. ++++++|+.|++++|.+
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~l~~L~~L~L~~n~~------------------------ 135 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-----FPNLTNLQTLRIGNVET------------------------ 135 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-----CTTCTTCCEEEEEESSS------------------------
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhh-----hhccCCccEEECCCCcc------------------------
Confidence 88877776777888888888888877642 2222 24455555554444442
Q ss_pred ccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccC--C
Q 001171 327 IRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQV--P 404 (1133)
Q Consensus 327 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p 404 (1133)
+..+.+..|.++++|++|++++|.+++..|..++.+++|++|++++|.+....+..+..+++|++|++++|++++.. |
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc
Confidence 33444566777777777777777777777777777777777777777766443333455777777777777776532 1
Q ss_pred -CccCCCCCCcEEEccCCcCccccCc----cccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCC
Q 001171 405 -AFLGGIRGLKIVSLGRNMFSGLIPL----SFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDV 479 (1133)
Q Consensus 405 -~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 479 (1133)
.....+++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+...- .......+
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~------------------~~~~~~~~ 277 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF------------------NPSESDVV 277 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC------------------CCCTTTCC
T ss_pred cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc------------------cccchhhh
Confidence 1223455666666666666543322 233445555555555555432100 00011223
Q ss_pred CCCCCCcEEEcccCCCccc-----cCCCcCCcccccEEeccccCCCCCCChhc-cCCCCCcEeeccCCcccccC---CCC
Q 001171 480 GNLKGLLVLNLSASGFSGK-----IPGSIGSLMRLTTLDLSNQNLSGELPIEL-FGLPSLQVVSLEENNLSGDV---PEG 550 (1133)
Q Consensus 480 ~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~---~~~ 550 (1133)
..+.+|+.|++.++.+... ++..+....+|+.|++++|+++ .+|..+ ..+++|++|++++|++++.. +..
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 4455566666666554321 1111233568999999999987 677766 47999999999999998765 345
Q ss_pred CCCCccCcEEEcccccccCCCC--cccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccc
Q 001171 551 FSSLVGLQYLNLSDNAFTGDIP--ATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSR 628 (1133)
Q Consensus 551 ~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 628 (1133)
++.+++|++|+|++|++++..+ ..+..+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..+ .++
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~ 432 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQT 432 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTT
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCC
Confidence 7889999999999999986543 56889999999999999999 688889999999999999999984 55444 268
Q ss_pred cCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCccccccc
Q 001171 629 IKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSR 708 (1133)
Q Consensus 629 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 708 (1133)
|+.|+|++|++++.+ ..+++|+.|+|++|+++ .+|. ...+++|+.|||++|++++.+|..+..+++|+.|++++
T Consensus 433 L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 433 LEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 999999999999643 57899999999999999 6776 56899999999999999998888899999999999999
Q ss_pred ccccccCCc
Q 001171 709 NNLEGEIPK 717 (1133)
Q Consensus 709 N~l~~~~p~ 717 (1133)
|++.|.+|.
T Consensus 507 N~~~~~~~~ 515 (549)
T 2z81_A 507 NPWDCSCPR 515 (549)
T ss_dssp SCBCCCHHH
T ss_pred CCccCCCcc
Confidence 999999883
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-48 Score=482.08 Aligned_cols=521 Identities=25% Similarity=0.261 Sum_probs=358.9
Q ss_pred ccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccc
Q 001171 159 ISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSS 238 (1133)
Q Consensus 159 ~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 238 (1133)
||.++|+++++|||++|+|++..|..|.++++|++|+|++|+|++..|..|+++++|++|+|++|++++..+..|.++++
T Consensus 46 vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred cCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 34445555666666666666555566666666666666666666555555666666666666666666444455666666
Q ss_pred cceeeccccccCCCCCCcccCcCcccEEEcccCCccCC-cccccccCcccccccccEEeccCCcccccccCCCCCccccc
Q 001171 239 LVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGL-VPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVL 317 (1133)
Q Consensus 239 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L 317 (1133)
|++|++++|+++++.+..|+++++|++|+|++|++++. +|..+ +++++|+.|++++|.+++
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-----~~l~~L~~L~L~~N~l~~------------- 187 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQS------------- 187 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECCSSCCCE-------------
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-----ccchhhhhhcccCccccc-------------
Confidence 66666666666666555666666666666666666542 22222 334444444444444333
Q ss_pred cEEeccCCcccccCCchhhcccccc----eeeccCceeecccCcccCCCCCCcEEEccCCcccc-cCchhhccCCCccEE
Q 001171 318 EVLDLQNNRIRAVFPSWLTNVTSLR----VMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSG-LVPDEIAKCSLLQMF 392 (1133)
Q Consensus 318 ~~L~L~~n~i~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 392 (1133)
+.+..|..+.+++ .++++.|.+....+..+ ....++.|++.+|.... ..+..+..+..++..
T Consensus 188 ------------~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 188 ------------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp ------------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred ------------cccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 2233333333222 34444444443322222 22234444444443331 112334444444444
Q ss_pred EccCCc------ccccCCCccCCCCCCcEEEccCCcCc---cccCccccCccccceeecccccccccCChhhcCCCCCcE
Q 001171 393 DLEGNR------FSGQVPAFLGGIRGLKIVSLGRNMFS---GLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTT 463 (1133)
Q Consensus 393 ~Ls~N~------l~~~~p~~l~~l~~L~~L~L~~N~l~---~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~ 463 (1133)
.+..+. +.......+..+..+....+..+... ...+..+..+.+++.+++.+|.+... ..+....+|+.
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~ 332 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQH 332 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhh
Confidence 443222 22223334444555555555544332 22344566677888888888877643 34566778888
Q ss_pred EecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCC--CCCChhccCCCCCcEeeccCC
Q 001171 464 LNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLS--GELPIELFGLPSLQVVSLEEN 541 (1133)
Q Consensus 464 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N 541 (1133)
|++++|.+.+..+ ..+..|+.+++..|.+... .....+++|+.|++++|.+. +..+..+..+.+|+.+++..|
T Consensus 333 L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 333 LELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp EEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 9998888875443 3456788888888887643 34557889999999999886 345677788899999999999
Q ss_pred cccccCCCCCCCCccCcEEEcccccccCCCC-cccccccccceeecccCccCCCCCccccCCCCccEEEecCCccc-CCC
Q 001171 542 NLSGDVPEGFSSLVGLQYLNLSDNAFTGDIP-ATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFT-GNI 619 (1133)
Q Consensus 542 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~ 619 (1133)
.+.. .+..+..+++|+.++++.|......+ ..+..+++++.++++.|++.+..+..+..+++|++|+|++|++. +..
T Consensus 408 ~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 408 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp SEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC
Confidence 9874 55678889999999999988776554 56788999999999999999988999999999999999999854 456
Q ss_pred ccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcccccc-
Q 001171 620 PVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALI- 698 (1133)
Q Consensus 620 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l- 698 (1133)
|..+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|||++|+|++..|..+..+
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 566 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence 7889999999999999999999889999999999999999999999889999999999999999999999999999988
Q ss_pred ccCcccccccccccccCCcc
Q 001171 699 SSLRYLNLSRNNLEGEIPKM 718 (1133)
Q Consensus 699 ~~L~~L~ls~N~l~~~~p~~ 718 (1133)
++|++|+|++|+|.|.+...
T Consensus 567 ~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TTCCEEECTTCCBCCSGGGH
T ss_pred CcCCEEEeeCCCCcccCCcH
Confidence 68999999999999988743
No 19
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=7.5e-50 Score=448.39 Aligned_cols=264 Identities=23% Similarity=0.385 Sum_probs=208.2
Q ss_pred hcCCCcccccccccceeEEEEEEC------CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ------DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++|.+.++||+|+||+||+|+++ +++.||||++..... ..++|.+|+++|++++|||||+++|+|.+.+ ..
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~-~~ 118 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR-PL 118 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS-SE
T ss_pred HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-EE
Confidence 356788899999999999999875 478999999975433 2467999999999999999999999998764 45
Q ss_pred EEEEeccCCCCHHHHHHhhccC----------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceE
Q 001171 909 LLVYDYMPNGNLATLLQEASHQ----------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAH 978 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~----------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~k 978 (1133)
++|||||++|+|.++++..... ....++|.++..|+.|||+||+|||+++|+||||||+|||+++++.+|
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~K 198 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVK 198 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEE
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEE
Confidence 9999999999999999875421 124589999999999999999999999999999999999999999999
Q ss_pred EeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHh
Q 001171 979 LSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQL 1057 (1133)
Q Consensus 979 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~ 1057 (1133)
|+|||+|+...... .........||+.|||||++.+..|+.++|||||||++|||+| |+.||......+....+.+..
T Consensus 199 i~DFGla~~~~~~~-~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~ 277 (329)
T 4aoj_A 199 IGDFGMSRDIYSTD-YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGR 277 (329)
T ss_dssp ECCCC-----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTC
T ss_pred EcccccceeccCCC-cceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC
Confidence 99999998653322 1222344679999999999999999999999999999999999 999998877776666554431
Q ss_pred hhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1058 QRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
+ ...+..+ .. ...+++.+||+.||++|||++||+++|+.+...|
T Consensus 278 ~-~~~p~~~----------~~------~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 278 E-LERPRAC----------PP------EVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp C-CCCCTTC----------CH------HHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred C-CCCcccc----------cH------HHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCC
Confidence 1 1111100 01 1237899999999999999999999999876643
No 20
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.2e-49 Score=442.41 Aligned_cols=259 Identities=23% Similarity=0.363 Sum_probs=210.7
Q ss_pred cCCCcccccccccceeEEEEEEC------CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ------DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++++.+.||+|+||+||+|.+. +++.||||++..... ..++|.+|++++++++|||||+++|+|.+.+. .
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~-~ 104 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP-L 104 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS-C
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE-E
Confidence 35677899999999999999863 468999999975432 35789999999999999999999999987654 4
Q ss_pred EEEEeccCCCCHHHHHHhhccCC-----------CCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCce
Q 001171 909 LLVYDYMPNGNLATLLQEASHQD-----------GHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEA 977 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~ 977 (1133)
++|||||++|+|.+++....... ...++|..+..++.|||+||+|||+++||||||||+|||+++++.+
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~ 184 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNV 184 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCE
T ss_pred EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCE
Confidence 99999999999999997643211 2358999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHH
Q 001171 978 HLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQ 1056 (1133)
Q Consensus 978 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~ 1056 (1133)
||+|||+|+...... .........||+.|||||++.++.|+.++|||||||++|||+| |+.||......++...+...
T Consensus 185 Ki~DFGlar~~~~~~-~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~ 263 (308)
T 4gt4_A 185 KISDLGLFREVYAAD-YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNR 263 (308)
T ss_dssp EECCSCCBCGGGGGG-CBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTT
T ss_pred EECCcccceeccCCC-ceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence 999999998653322 1223345679999999999999999999999999999999999 89999887777666555432
Q ss_pred hhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcC
Q 001171 1057 LQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGC 1114 (1133)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~ 1114 (1133)
...... ... .. ...+++.+||+.||++||+|+||+++|+..
T Consensus 264 ----~~~~~p--------~~~---~~--~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 264 ----QVLPCP--------DDC---PA--WVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp ----CCCCCC--------TTC---CH--HHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ----CCCCCc--------ccc---hH--HHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 111110 010 01 123789999999999999999999999875
No 21
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=5.4e-50 Score=443.22 Aligned_cols=262 Identities=22% Similarity=0.381 Sum_probs=211.6
Q ss_pred hcCCCcccccccccceeEEEEEEC------CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ------DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++|.+.+.||+|+||+||+|++. +++.||||++..... ..++|.+|++++++++|||||+++|+|.+.+ ..
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~-~~ 90 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD-PL 90 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS-SE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC-EE
Confidence 357889999999999999999874 478999999975433 2467999999999999999999999998764 45
Q ss_pred EEEEeccCCCCHHHHHHhhcc--------CCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEe
Q 001171 909 LLVYDYMPNGNLATLLQEASH--------QDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLS 980 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~--------~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~ 980 (1133)
++|||||++|+|.++++..+. .....++|..+..++.|||+||+|||+++|+||||||+|||+++++.+||+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~ 170 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIG 170 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEEC
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEEC
Confidence 999999999999999987531 223469999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhh
Q 001171 981 EFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQR 1059 (1133)
Q Consensus 981 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~ 1059 (1133)
|||+|+....... ........||+.|||||++.+..|+.++|||||||++|||+| |+.||...+..++...+.+...
T Consensus 171 DFGla~~~~~~~~-~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~- 248 (299)
T 4asz_A 171 DFGMSRDVYSTDY-YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV- 248 (299)
T ss_dssp CCSCHHHHTGGGC-EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCC-
T ss_pred CcccceecCCCCc-eeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCC-
Confidence 9999986533221 112234568999999999999999999999999999999999 9999988777766665544211
Q ss_pred ccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1060 GQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
... +... .. ...+++.+||+.||++|||++||++.|+.+..
T Consensus 249 ---~~~--------p~~~---~~--~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 249 ---LQR--------PRTC---PQ--EVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp ---CCC--------CTTC---CH--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CCC--------Cccc---hH--HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 110 0000 01 12378999999999999999999999988654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-48 Score=490.83 Aligned_cols=496 Identities=17% Similarity=0.207 Sum_probs=320.2
Q ss_pred ccCcEEEcccCcccCCCCccccCCCCcceEec-cCCcccCcCCCcccc----cc-----chhhhhhcccccCCCccCccC
Q 001171 95 HELRKLSLHSNHLNGSIPASLHQCSLLRAVYL-QYNSFSGHLPLSIFN----LT-----NLLVLNVAHNLLSGKISADIS 164 (1133)
Q Consensus 95 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L-~~n~~~g~~p~~l~~----l~-----~L~~L~l~~N~l~~~~~~~~~ 164 (1133)
.+++.|+|++|++.|.+|..|++|++|+.|+| ++|.++|..|..... ++ .++..+.. ..+....+..+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~-~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK-MFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH-HHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhh-hhhccCcchhhh
Confidence 57889999999999999999999999999999 999999885543211 11 11111111 000000000000
Q ss_pred CcceEEEccCCcCCCCCCCCCCCCCcCcEEeccC--CcCCCCCcccccCccccceEecccccccC---------------
Q 001171 165 PSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSY--NSFSGEVPASVGQLQELEYLWLDSNHLYG--------------- 227 (1133)
Q Consensus 165 ~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------- 227 (1133)
.+....+..+. ...+........++.+.++. |+++| ||..++++++|++|+|++|+++|
T Consensus 402 -~l~~~~l~~~~--~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 402 -DLLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp -HHHHHHHHTCT--TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred -HHHHHHhhhCc--cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 00000000000 00111111222233333332 56665 56666666666666666666655
Q ss_pred --CCCcccc--CccccceeeccccccCCCCCCcccCcCcccEEEcccCC-ccC-CcccccccCcccccccccEEeccCCc
Q 001171 228 --TLPSAIS--NCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNE-LTG-LVPVSVLCNLWGNISSLRIVQLGFNA 301 (1133)
Q Consensus 228 --~~p~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~ 301 (1133)
.+|..++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ ++| .+|..+ ++++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-----~~L~----------- 541 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW-----TRLA----------- 541 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH-----HHHH-----------
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH-----Hhhh-----------
Confidence 5777776 88888888888888887888888888888888888887 776 666544 2221
Q ss_pred ccccccCCCCCccccccEEeccCCcccccCCc--hhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccC
Q 001171 302 FTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPS--WLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLV 379 (1133)
Q Consensus 302 l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 379 (1133)
..+..+++|++|+|++|+++.+ |. .|.++++|++|+|++|+|+ .+| .|+.+++|++|+|++|+++ .+
T Consensus 542 -------~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~l 610 (876)
T 4ecn_A 542 -------DDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EI 610 (876)
T ss_dssp -------HCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CC
T ss_pred -------hcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cc
Confidence 0122334566777777777755 55 7888888888888888888 777 8888888888888888888 67
Q ss_pred chhhccCCC-ccEEEccCCcccccCCCccCCCCC--CcEEEccCCcCccccCccc---c--CccccceeecccccccccC
Q 001171 380 PDEIAKCSL-LQMFDLEGNRFSGQVPAFLGGIRG--LKIVSLGRNMFSGLIPLSF---G--NLSQLETLNLSENDIRGNI 451 (1133)
Q Consensus 380 ~~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~L~~N~i~~~~ 451 (1133)
|..+.++++ |++|+|++|+++ .+|..+..++. |+.|+|++|.+++.+|... . .+++|+.|+|++|+++. +
T Consensus 611 p~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-l 688 (876)
T 4ecn_A 611 PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-F 688 (876)
T ss_dssp CTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-C
T ss_pred hHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-c
Confidence 777888888 888888888888 67777776654 8888888888887655322 2 33478888888888884 4
Q ss_pred Chh-hcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhcc--
Q 001171 452 PEE-ITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELF-- 528 (1133)
Q Consensus 452 ~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-- 528 (1133)
|.. +..+++|+.|+|++|+++ .+|..+.... +..+.++++|+.|+|++|+++ .+|..+.
T Consensus 689 p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 444 447788888888888777 4443322110 011234557777777777777 5666666
Q ss_pred CCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEE
Q 001171 529 GLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVL 608 (1133)
Q Consensus 529 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 608 (1133)
.+++|+.|+|++|++++ +|..+.++++|+.|+|++|+ ++++|++.+.+|..++.+++|+.|
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEE
Confidence 77777777777777775 56677777777777777765 455566666666666666666666
Q ss_pred EecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCC
Q 001171 609 ELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLS 664 (1133)
Q Consensus 609 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 664 (1133)
+|++|++ +.+|..+. ++|+.|+|++|++....+..++....+..+.|.+|++.
T Consensus 812 ~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp ECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred ECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 6666666 45665544 46666666666666555555555555666666666655
No 23
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-49 Score=433.56 Aligned_cols=260 Identities=22% Similarity=0.380 Sum_probs=200.8
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|++.++||+|+||+||+|++++ .||||+++....+ .+.|.+|++++++++|||||+++|++.++ . .++||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~-~-~~iVm 110 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD-N-LAIVT 110 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-S-CEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC-e-EEEEE
Confidence 4578899999999999999998764 4899998644333 36789999999999999999999998653 3 58999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
|||++|+|.++++... ..++|..+..|+.|||+||+|||+++||||||||+|||+++++.+||+|||+|+......
T Consensus 111 Ey~~gGsL~~~l~~~~----~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQE----TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp ECCSSCBHHHHHHTSC----CCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred EcCCCCCHHHHHhhcC----CCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCC
Confidence 9999999999997643 348999999999999999999999999999999999999999999999999997643222
Q ss_pred CCCCCCCCCCCCCCccCccccCC---CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 993 AEASSSTTPIGSLGYVSPEAAST---GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
........+||+.|||||++.+ +.|+.++|||||||++|||+||+.||...+.......... .+. ..+.
T Consensus 187 -~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~---~~~----~~p~ 258 (307)
T 3omv_A 187 -GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVG---RGY----ASPD 258 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHH---TTC----CCCC
T ss_pred -cceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHh---cCC----CCCC
Confidence 1223345689999999999853 4589999999999999999999999976554433332222 111 1111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
........ .. ...+++.+||+.||++|||+.||+++||.++.
T Consensus 259 ~~~~~~~~---~~--~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 259 LSKLYKNC---PK--AMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp STTSCTTS---CH--HHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred cccccccc---hH--HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence 11111111 11 12378899999999999999999999998764
No 24
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.4e-48 Score=436.38 Aligned_cols=249 Identities=20% Similarity=0.320 Sum_probs=206.0
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC-cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT-IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
+.|++.+.||+|+||+||+|+++ +|+.||||++.... ...+.+.+|+++|++++|||||++++++.+.+ ..|+||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~-~~~ivmEy 152 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD-ELWVVMEF 152 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETT-EEEEEECC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-EEEEEEeC
Confidence 56999999999999999999875 69999999996432 33567899999999999999999999998764 55999999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAE 994 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 994 (1133)
|++|+|.+++.+. .+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....
T Consensus 153 ~~gg~L~~~l~~~------~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~--- 223 (346)
T 4fih_A 153 LEGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--- 223 (346)
T ss_dssp CTTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS---
T ss_pred CCCCcHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCC---
Confidence 9999999999752 3899999999999999999999999999999999999999999999999999765322
Q ss_pred CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 995 ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 995 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||...+..+....+..... +......
T Consensus 224 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~---------~~~~~~~ 294 (346)
T 4fih_A 224 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP---------PRLKNLH 294 (346)
T ss_dssp SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSC---------CCCSCGG
T ss_pred CCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCC---------CCCCccc
Confidence 2234567899999999999999999999999999999999999999987766665554433210 0010000
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.-.. ...+++.+||+.||++|||++|++++
T Consensus 295 ~~s~------~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 295 KVSP------SLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp GSCH------HHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred cCCH------HHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 0011 12378999999999999999999875
No 25
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.2e-48 Score=437.77 Aligned_cols=251 Identities=20% Similarity=0.295 Sum_probs=200.6
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.+.||+|+||+||+|+++ +|+.||||++...... .+.+.+|++++++++|||||++++++.+. +..|+|
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~yiV 101 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEEN-GSLYIV 101 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC-CEEEEE
Confidence 368999999999999999999875 6999999999755433 45788999999999999999999999876 456999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
||||+||+|.+++...+. ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....
T Consensus 102 mEy~~gg~L~~~i~~~~~---~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 102 MDYCEGGDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp EECCTTCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred EeCCCCCcHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 999999999999986432 34788899999999999999999999999999999999999999999999999754221
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||...+..++...+... .++.. .
T Consensus 179 ---~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~----~~~~~-~---- 246 (350)
T 4b9d_A 179 ---VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISG----SFPPV-S---- 246 (350)
T ss_dssp ---HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHT----CCCCC-C----
T ss_pred ---cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcC----CCCCC-C----
Confidence 11223457999999999999999999999999999999999999999877766655554432 11111 0
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. +.. ...+++.+||+.||++|||++|++++
T Consensus 247 ---~~---~s~--~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 247 ---LH---YSY--DLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp ---TT---SCH--HHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ---cc---CCH--HHHHHHHHHccCChhHCcCHHHHhcC
Confidence 00 001 12378999999999999999999863
No 26
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.7e-48 Score=434.68 Aligned_cols=255 Identities=18% Similarity=0.230 Sum_probs=204.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
.+.|++.++||+|+||+||+|+++ +|+.||||++..... ..+|++++++++|||||++++++.+. +..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l~HpnIV~l~~~~~~~-~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGLSSPRIVPLYGAVREG-PWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTCCCTTBCCEEEEEEET-TEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEec
Confidence 346888899999999999999875 689999999975432 34799999999999999999999876 455999999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC-ceEEeccCcccccccCCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF-EAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~~~ 993 (1133)
|+||+|.+++++.+ .+++..+..++.||+.||+|||+++|+||||||+|||++.++ ++||+|||+|+.......
T Consensus 132 ~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~ 206 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-----CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL 206 (336)
T ss_dssp CTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred cCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCc
Confidence 99999999998754 389999999999999999999999999999999999999988 699999999986543322
Q ss_pred CC--CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 994 EA--SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 994 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
.. ......+||+.|||||++.+..|+.++||||+||++|||++|++||......++...+.... ..+.
T Consensus 207 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~--~~~~-------- 276 (336)
T 4g3f_A 207 GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEP--PPIR-------- 276 (336)
T ss_dssp -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSC--CGGG--------
T ss_pred ccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCC--CCch--------
Confidence 11 12234579999999999999999999999999999999999999998766655555444321 0001
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
+.++... ....+++.+||+.||++|||+.|++++|+...
T Consensus 277 ~~~~~~s-----~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 277 EIPPSCA-----PLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp GSCTTSC-----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcCccCC-----HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 1111110 11237889999999999999999999886543
No 27
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.6e-48 Score=429.35 Aligned_cols=247 Identities=17% Similarity=0.312 Sum_probs=206.5
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|++.++||+|+||+||+|+++ +|+.||||++.+. ....+.+.+|++++++++|||||++++++.+. +..|+|
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-~~~yiv 110 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD-EKLYFG 110 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-CEEEEE
Confidence 47999999999999999999875 6899999999642 23356789999999999999999999999876 455999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||++||+|.+++++.+ .+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....
T Consensus 111 mEy~~gG~L~~~i~~~~-----~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKIG-----SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp ECCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 99999999999998754 3889999999999999999999999999999999999999999999999999865322
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
. ........+||+.|||||++.+..|+.++||||+||++|||++|+.||...+..++...+.+. ...+++ .+
T Consensus 186 ~-~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~--~~~~p~----~~- 257 (311)
T 4aw0_A 186 S-KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKL--EYDFPE----KF- 257 (311)
T ss_dssp T-TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT--CCCCCT----TC-
T ss_pred C-CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcC--CCCCCc----cc-
Confidence 1 223345678999999999999999999999999999999999999999877766666555432 111111 00
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIV 1108 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl 1108 (1133)
.. .+.+++.+|++.||++|||++|++
T Consensus 258 -----s~------~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 258 -----FP------KARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp -----CH------HHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred -----CH------HHHHHHHHHccCCHhHCcChHHHc
Confidence 01 123789999999999999999864
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-48 Score=468.91 Aligned_cols=459 Identities=19% Similarity=0.231 Sum_probs=297.0
Q ss_pred cEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccC
Q 001171 192 QLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRN 271 (1133)
Q Consensus 192 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 271 (1133)
++||+++|+++ .+|..+. ++|++|+|++|++++..|..+.++++|++|++++|+++++.|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46888888888 5776665 78888888888887666677777888888888888887777777777777777777777
Q ss_pred CccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCccccc-CCchhhcccccceeeccCce
Q 001171 272 ELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAV-FPSWLTNVTSLRVMDLSGNF 350 (1133)
Q Consensus 272 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~N~ 350 (1133)
++++ +|.. .+.+|++|+|++|+|+++ .|..|.++++|++|+|++|.
T Consensus 80 ~l~~-lp~~--------------------------------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 80 KLVK-ISCH--------------------------------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCCE-EECC--------------------------------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ceee-cCcc--------------------------------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 7763 2221 233445555555555543 36777777888888888877
Q ss_pred eecccCcccCCCCCC--cEEEccCCcc--cccCchhhccCC-CccEEEccCCcccccCCC-ccCCCCCCcEEEccCCc--
Q 001171 351 FSGNLPAAVGSLDKL--EVLRVANNSL--SGLVPDEIAKCS-LLQMFDLEGNRFSGQVPA-FLGGIRGLKIVSLGRNM-- 422 (1133)
Q Consensus 351 l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~-- 422 (1133)
|.+ ..+..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++. .+.++++|+.|++++|.
T Consensus 127 l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 127 LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred cch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 765 345556666 7777777777 566666665554 334556666666554433 44556666666666665
Q ss_pred -----CccccCccccCccccceeecccccccccCChhhc---CCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCC
Q 001171 423 -----FSGLIPLSFGNLSQLETLNLSENDIRGNIPEEIT---RLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASG 494 (1133)
Q Consensus 423 -----l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 494 (1133)
+.+.+| .+..+++|+.|++++|.+++..+..+. ..++|++|++++|++++.+|..+...
T Consensus 204 ~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~------------ 270 (520)
T 2z7x_B 204 NKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY------------ 270 (520)
T ss_dssp TTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC------------
T ss_pred cccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc------------
Confidence 444444 555566666666666555543222111 12345555555555554444444000
Q ss_pred CccccCCCcCCcccccEEeccccCCCCCCC-hhccCC---CCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCC
Q 001171 495 FSGKIPGSIGSLMRLTTLDLSNQNLSGELP-IELFGL---PSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGD 570 (1133)
Q Consensus 495 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 570 (1133)
...++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.
T Consensus 271 -------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 271 -------SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp -------CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred -------ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence 005555566666666655 233 333333 45666666666654321 124566677777777777766
Q ss_pred CCcccccccccceeecccCccCC--CCCccccCCCCccEEEecCCcccCCCccc-cccccccCeeecCCCcccCcCchhh
Q 001171 571 IPATYGFLRSLVFLSLSHNQISG--MIPAELGACSALEVLELRSNHFTGNIPVD-ISHLSRIKKLDLGQNKLSGEIPKEI 647 (1133)
Q Consensus 571 ~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l 647 (1133)
+|..++.+++|++|++++|++++ .+|..++.+++|++|++++|++++.+|.. +..+++|+.|+|++|++++.+|..+
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 66677777777777777777765 44556777777777777777777655554 6667778888888888776666655
Q ss_pred hccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcc-ccccccCcccccccccccccCCc
Q 001171 648 SKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPAD-LALISSLRYLNLSRNNLEGEIPK 717 (1133)
Q Consensus 648 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 717 (1133)
. ++|+.|++++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+++|++|++++|+++|.++.
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 4 67888888888888 67777778888888888888887 45554 77888888888888888887764
No 29
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=8.7e-48 Score=422.02 Aligned_cols=244 Identities=23% Similarity=0.357 Sum_probs=194.8
Q ss_pred CcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeC---CCCcEEEEE
Q 001171 840 DEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAG---PPDVRLLVY 912 (1133)
Q Consensus 840 ~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~---~~~~~~lV~ 912 (1133)
.+.++||+|+||+||+|.++ +++.||+|++...... .+.|.+|++++++++|||||++++++.. .+...|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 56778999999999999875 5899999999654333 4578999999999999999999999864 234568999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC--ceecccCccceeeCC-CCceEEeccCcccccc
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD--MVHGDIKPQNVLFDA-DFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~--ivH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~ 989 (1133)
|||++|+|.+++++.+ .+++..+..++.||+.||+|||+++ |+||||||+|||++. ++.+||+|||+|+...
T Consensus 109 Ey~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~ 183 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred eCCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence 9999999999998753 3889999999999999999999998 999999999999984 7999999999997532
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCCh-hhHHHHHHHHhhhccccccccC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQD-EDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
. ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||..... ..+...+ ..+..+..++.
T Consensus 184 ~-----~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i----~~~~~~~~~~~ 253 (290)
T 3fpq_A 184 A-----SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRV----TSGVKPASFDK 253 (290)
T ss_dssp T-----TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHH----TTTCCCGGGGG
T ss_pred C-----CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHH----HcCCCCCCCCc
Confidence 1 22345689999999999865 699999999999999999999999965433 2222222 22211111111
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. .. ...+++.+||+.||++|||++|++++
T Consensus 254 ~~------~~------~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 254 VA------IP------EVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp CC------CH------HHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred cC------CH------HHHHHHHHHccCChhHCcCHHHHhcC
Confidence 11 01 12378999999999999999999864
No 30
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=2.6e-48 Score=439.26 Aligned_cols=268 Identities=22% Similarity=0.336 Sum_probs=213.2
Q ss_pred HHHHHhcCCCcccccccccceeEEEEEECC------ceEEEEEEcccCCcC--HHHHHHHHHHHhhccC-CCeeeEEEEE
Q 001171 831 ETLEATRQFDEENVLSRGRYGLIFKASYQD------GMVLSIRRLRDGTID--ENTFRKEAEALGKVKH-RNLTVLRGYY 901 (1133)
Q Consensus 831 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~------g~~vavK~~~~~~~~--~~~~~~E~~~l~~l~h-pniv~l~~~~ 901 (1133)
+++...++|++.+.||+|+||+||+|.+.. ++.||||++...... .+.|.+|++++++++| ||||+++|+|
T Consensus 58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~ 137 (353)
T 4ase_A 58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 137 (353)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEE
Confidence 344456789999999999999999997642 478999999764432 4578999999999965 8999999999
Q ss_pred eCCCCcEEEEEeccCCCCHHHHHHhhccC-----------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCcccee
Q 001171 902 AGPPDVRLLVYDYMPNGNLATLLQEASHQ-----------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVL 970 (1133)
Q Consensus 902 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIl 970 (1133)
.......++|||||++|+|.++++..... ....+++..+..++.|||+||+|||+++||||||||+|||
T Consensus 138 ~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NIL 217 (353)
T 4ase_A 138 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL 217 (353)
T ss_dssp CCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred EecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCcccee
Confidence 77656669999999999999999875321 1245899999999999999999999999999999999999
Q ss_pred eCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCCh-hh
Q 001171 971 FDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQD-ED 1048 (1133)
Q Consensus 971 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~-~~ 1048 (1133)
+++++.+||+|||+|+....... ........||+.|||||++.+..|+.++|||||||++|||+| |+.||..... +.
T Consensus 218 l~~~~~vKi~DFGlar~~~~~~~-~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~ 296 (353)
T 4ase_A 218 LSEKNVVKICDFGLARDIYKDPD-YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 296 (353)
T ss_dssp ECGGGCEEECCCGGGSCTTTCTT-SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH
T ss_pred eCCCCCEEECcchhhhhcccCCC-ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH
Confidence 99999999999999986533221 222345678999999999999999999999999999999998 9999976553 33
Q ss_pred HHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1049 IVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
+...+.+.. +...++.+ .. ...+++.+||+.||++|||+.||+++|+.+..
T Consensus 297 ~~~~i~~g~-~~~~p~~~----------~~------~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 297 FCRRLKEGT-RMRAPDYT----------TP------EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp HHHHHHHTC-CCCCCTTC----------CH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCCCccC----------CH------HHHHHHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence 333333321 11111111 11 12378889999999999999999999987643
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-47 Score=460.69 Aligned_cols=454 Identities=21% Similarity=0.235 Sum_probs=274.3
Q ss_pred hhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccc
Q 001171 146 LVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHL 225 (1133)
Q Consensus 146 ~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 225 (1133)
++|++++|.++ .+|..+++++++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCS-SCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCcc-cccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 35788888888 57787888888888888888888778888888888888888888887788888888888888888888
Q ss_pred cCCCCccccCccccceeeccccccCCC-CCCcccCcCcccEEEcccCCccCCcccccccCcccccccc--cEEeccCCcc
Q 001171 226 YGTLPSAISNCSSLVHLSAEDNVLKGL-IPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSL--RIVQLGFNAF 302 (1133)
Q Consensus 226 ~~~~p~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L--~~l~l~~n~l 302 (1133)
+ .+|.. .+++|++|++++|+++++ +|..|+++++|++|+|++|++++. . +..+++| +.|++++|.+
T Consensus 82 ~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-----GGGGTTSCEEEEEEEECTT
T ss_pred e-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h-----ccccccceeeEEEeecccc
Confidence 7 56665 788888888888888874 577888888888888888888651 1 2445555 6666666665
Q ss_pred cccccCCCCCccccccEEeccCCcccccCCchhhccc-ccceeeccCceeecccCc-ccCCCCCCcEEEccCCc------
Q 001171 303 TGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVT-SLRVMDLSGNFFSGNLPA-AVGSLDKLEVLRVANNS------ 374 (1133)
Q Consensus 303 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~------ 374 (1133)
.+ .+..|..+..+. ....+++++|.+.+.++. .+.++++|+.|++++|.
T Consensus 151 ~~-----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 207 (520)
T 2z7x_B 151 YG-----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207 (520)
T ss_dssp TT-----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH
T ss_pred cc-----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc
Confidence 11 222333343333 222344444544433332 34445555555555554
Q ss_pred -ccccCchhhccCCCccEEEccCCcccccCCCccC---CCCCCcEEEccCCcCccccCccc-----cCccccceeecccc
Q 001171 375 -LSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLG---GIRGLKIVSLGRNMFSGLIPLSF-----GNLSQLETLNLSEN 445 (1133)
Q Consensus 375 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N 445 (1133)
+.+.+| .+..+++|+.|++++|.+++..+..+. ..++|+.|++++|.+++.+|..+ ..+++|+.+++++|
T Consensus 208 ~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 286 (520)
T 2z7x_B 208 YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286 (520)
T ss_dssp HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc
Confidence 333333 444555555555555554432211110 12355555555555555555555 66666666676666
Q ss_pred cccccCC-hhhcCC---CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCC
Q 001171 446 DIRGNIP-EEITRL---SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSG 521 (1133)
Q Consensus 446 ~i~~~~~-~~l~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 521 (1133)
.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++..|..++.+++|++|++++|++++
T Consensus 287 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 287 VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362 (520)
T ss_dssp CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred ce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence 66 233 344433 55777777777665321 11455556666666666655555555556666666666665553
Q ss_pred --CCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccc
Q 001171 522 --ELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAEL 599 (1133)
Q Consensus 522 --~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 599 (1133)
.+|..+..+++|++|++++|++++.+|. ..+..+++|++|++++|++++..|..+
T Consensus 363 l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKK-----------------------GDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp HHHHHHHHTTCTTCCEEECCSSCCBCCGGG-----------------------CSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred cccchHHHhhCCCCCEEECCCCcCCccccc-----------------------chhccCccCCEEECcCCCCCcchhhhh
Confidence 2334455555555555555555442221 123444455555555555544444443
Q ss_pred cCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchh-hhccCCCcEEEeecCCCCcc
Q 001171 600 GACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKE-ISKCSSLVSLTLDMNSLSGR 666 (1133)
Q Consensus 600 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ 666 (1133)
. ++|++|++++|+++ .+|..+..+++|++|+|++|+|+ .+|.. +..+++|+.|++++|++++.
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 2 45666666666666 45655556666666666666666 34443 66667777777777776654
No 32
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.5e-47 Score=416.16 Aligned_cols=245 Identities=20% Similarity=0.313 Sum_probs=190.9
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc----CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI----DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|++.+.||+|+||+||+|+++ +|+.||||++.+... ..+.+.+|++++++++|||||++++++.+. +..|+|
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~-~~~~iv 91 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSK-DEIIMV 91 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC-CEEEEE
Confidence 58999999999999999999875 699999999965332 246789999999999999999999999876 455999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+ +|+|.+++.+.+ .+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....
T Consensus 92 mEy~-~g~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~- 164 (275)
T 3hyh_A 92 IEYA-GNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD- 164 (275)
T ss_dssp EECC-CEEHHHHHHHSC-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred EeCC-CCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCC-
Confidence 9999 789999998643 389999999999999999999999999999999999999999999999999975432
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.......+||+.|||||++.+..+ +.++||||+||++|||++|+.||...+...+.+.+.... ..++..+
T Consensus 165 ---~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~--~~~p~~~---- 235 (275)
T 3hyh_A 165 ---GNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV--YTLPKFL---- 235 (275)
T ss_dssp -------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC--CCCCTTS----
T ss_pred ---CCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC--CCCCCCC----
Confidence 122345689999999999988876 579999999999999999999998776665555443321 1111100
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. ...+++.+|++.||++|||++|++++
T Consensus 236 ------s~------~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 236 ------SP------GAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp ------CH------HHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred ------CH------HHHHHHHHHccCChhHCcCHHHHHcC
Confidence 01 12378999999999999999999874
No 33
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=437.77 Aligned_cols=250 Identities=20% Similarity=0.318 Sum_probs=207.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC-cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT-IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
.+.|++.++||+|+||.||+|+++ +|+.||||++.... ...+.+.+|+++|++++|||||+++++|.+.+ ..|+|||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~-~~~iVmE 228 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD-ELWVVME 228 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETT-EEEEEEE
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECC-EEEEEEe
Confidence 357999999999999999999875 69999999996433 33567899999999999999999999998764 5599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 993 (1133)
||+||+|.++++.. .+++..+..++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.....
T Consensus 229 y~~gG~L~~~i~~~------~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~-- 300 (423)
T 4fie_A 229 FLEGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 300 (423)
T ss_dssp CCTTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS--
T ss_pred CCCCCcHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCC--
Confidence 99999999999752 3889999999999999999999999999999999999999999999999999765322
Q ss_pred CCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCC
Q 001171 994 EASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 994 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||...+..+....+..... +.....
T Consensus 301 -~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~---------~~~~~~ 370 (423)
T 4fie_A 301 -VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP---------PRLKNL 370 (423)
T ss_dssp -CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC---------CCCSCT
T ss_pred -CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCC---------CCCccc
Confidence 2234567899999999999999999999999999999999999999987766665555433210 111100
Q ss_pred CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1074 DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1074 ~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..... ...+++.+||+.||++|||+.|++++
T Consensus 371 ~~~s~------~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 371 HKVSP------SLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp TSSCH------HHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ccCCH------HHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 01111 12378899999999999999999875
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-45 Score=460.01 Aligned_cols=514 Identities=20% Similarity=0.211 Sum_probs=327.9
Q ss_pred ccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCcc--CCcceEEEc
Q 001171 95 HELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADI--SPSLRYLDL 172 (1133)
Q Consensus 95 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L~L 172 (1133)
+.+++|||++|+|++..|..|.++++|+.|+|++|+|++..|.+|.+|++|++|+|++|+|++..+..+ .++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 478999999999997777789999999999999999997666779999999888888888875444433 367888888
Q ss_pred cCCcCCCCCCCCCCCCCcCcEEeccCCcCCC-CCcccccCccccceEecccccccCCCCccccCccccc----eeecccc
Q 001171 173 SSNAFTGEIPGNFSSKSQLQLINLSYNSFSG-EVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLV----HLSAEDN 247 (1133)
Q Consensus 173 s~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~l~~N 247 (1133)
++|++++..+..|+++++|++|+|++|++++ .+|..++.+++|++|+|++|++++..|..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 8888887777778888888888888888865 3677778888888888888888777777776665543 5677778
Q ss_pred ccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcc
Q 001171 248 VLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRI 327 (1133)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i 327 (1133)
.++.+.+..+.. ..++.|++++|.....++.. .+..+..++...+..+..... ..+
T Consensus 212 ~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~----~~~~l~~l~~~~l~~~~~~~~-------------------~~l 267 (635)
T 4g8a_A 212 PMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKT----CIQGLAGLEVHRLVLGEFRNE-------------------GNL 267 (635)
T ss_dssp CCCEECTTTTTT-CEEEEEEEESCCSSHHHHHH----HHHTTTTCEEEEEEEECCTTS-------------------CCC
T ss_pred cccccCcccccc-hhhhhhhhhcccccccccch----hhcCCcccccccccccccccc-------------------ccc
Confidence 877665555443 45677777777654322221 124455555555543332221 122
Q ss_pred cccCCchhhcccccceeeccCceee---cccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCC
Q 001171 328 RAVFPSWLTNVTSLRVMDLSGNFFS---GNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVP 404 (1133)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 404 (1133)
.......+..+..+..+++..+... ...+..+..+.+++.+++.+|.+... ..+.....|+.|++++|.+....+
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc
Confidence 2333444555555555555544332 12233455566677777777766543 234555667777777777764433
Q ss_pred CccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccc--cCChhhcCCCCCcEEecccCcCCCCCCCCCCCC
Q 001171 405 AFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRG--NIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNL 482 (1133)
Q Consensus 405 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 482 (1133)
. .+..|+.+++..|.+... ..+.++++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.+.. .+..+..+
T Consensus 346 ~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l 419 (635)
T 4g8a_A 346 L---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL 419 (635)
T ss_dssp C---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred c---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence 3 345666777777766543 334467777777777777643 345556666777777777776652 34455666
Q ss_pred CCCcEEEcccCCCccccC-CCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcc-cccCCCCCCCCccCcEE
Q 001171 483 KGLLVLNLSASGFSGKIP-GSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNL-SGDVPEGFSSLVGLQYL 560 (1133)
Q Consensus 483 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 560 (1133)
++|+.++++.|+.....+ ..+..+.+++.++++.|.+.+..+..+..+++|+.|++++|.+ .+..|..|..+++|++|
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 666666666665544332 3455666666666666666655555566666666666666653 23455556666666666
Q ss_pred EcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccc-cccCeeecCCCcc
Q 001171 561 NLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHL-SRIKKLDLGQNKL 639 (1133)
Q Consensus 561 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l 639 (1133)
+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+ ++|+.|+|++|.+
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 666666665555556666666666666666655555555555566666666666655555555554 3555555555555
Q ss_pred c
Q 001171 640 S 640 (1133)
Q Consensus 640 ~ 640 (1133)
.
T Consensus 580 ~ 580 (635)
T 4g8a_A 580 A 580 (635)
T ss_dssp C
T ss_pred c
Confidence 4
No 35
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=3e-47 Score=424.74 Aligned_cols=268 Identities=19% Similarity=0.252 Sum_probs=198.1
Q ss_pred cCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC---cEEEEEe
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPD---VRLLVYD 913 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~---~~~lV~e 913 (1133)
++|.+.++||+|+||+||+|+++ |+.||||++.........+++|+..+.+++|||||++++++.+... ..++|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E 81 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence 46888999999999999999885 8999999997543323334456666778899999999999975432 4589999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC--------CceecccCccceeeCCCCceEEeccCcc
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL--------DMVHGDIKPQNVLFDADFEAHLSEFGLD 985 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~--------~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 985 (1133)
||++|+|.++++.. .++|..+.+++.|+|+||+|||++ +|+||||||+|||++.++.+||+|||+|
T Consensus 82 y~~~gsL~~~l~~~------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 82 YHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp CCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred CCCCCcHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCC
Confidence 99999999999863 388999999999999999999987 8999999999999999999999999999
Q ss_pred cccccCCCC-CCCCCCCCCCCCccCccccCCC------CCCCCCchhHHHHHHHHHHhCCCCCccCChh-----------
Q 001171 986 RLAIATPAE-ASSSTTPIGSLGYVSPEAASTG------QPTKEADVYSFGIVLLEILTGRKPVMFTQDE----------- 1047 (1133)
Q Consensus 986 ~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~----------- 1047 (1133)
+........ .......+||+.|||||++.+. .++.++|||||||++|||+||+.||......
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred ccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhccccc
Confidence 865443322 1223346799999999998654 3577999999999999999998776432111
Q ss_pred hHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1048 DIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
.....+.+...... .++... ......+......+++.+||+.||++||||.||++.|+++....
T Consensus 236 ~~~~~~~~~~~~~~----~rp~~p---~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 236 PSVEEMRKVVCEQK----LRPNIP---NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp CCHHHHHHHHTTSC----CCCCCC---GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHhccc----CCCCCC---ccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHc
Confidence 01122222221111 111111 11111122223348999999999999999999999999876543
No 36
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.3e-47 Score=422.48 Aligned_cols=246 Identities=24% Similarity=0.397 Sum_probs=196.6
Q ss_pred cCCCcccccccccceeEEEEEEC----CceEEEEEEcccCCc---CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTI---DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
++|++.+.||+|+||+||+|+.. .++.||||++.+... +...+.+|++++++++|||||++++++.+. +..|
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-~~~~ 102 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTE-GKLY 102 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEET-TEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC-CEEE
Confidence 47999999999999999999763 478999999965322 234688999999999999999999999876 4559
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+|||||+||+|.+++.+.+ .+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+...
T Consensus 103 ivmEy~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 103 LILDFLRGGDLFTRLSKEV-----MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EEECCCTTCEEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEEEcCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence 9999999999999998754 38999999999999999999999999999999999999999999999999997543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. .......+||+.|||||++.+..|+.++||||+||++|||++|+.||...+..++...+.+. ...+++.+
T Consensus 178 ~~---~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~--~~~~p~~~--- 249 (304)
T 3ubd_A 178 DH---EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKA--KLGMPQFL--- 249 (304)
T ss_dssp ------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTS---
T ss_pred CC---CccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcC--CCCCCCcC---
Confidence 22 22334578999999999999999999999999999999999999999877776665555432 11111110
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCH-----HHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSM-----ADIVF 1109 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~-----~evl~ 1109 (1133)
.. ...+++.+||+.||++|||+ +|+++
T Consensus 250 -------s~------~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 250 -------SP------EAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp -------CH------HHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred -------CH------HHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 01 12378999999999999984 67765
No 37
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=1.1e-45 Score=409.53 Aligned_cols=252 Identities=22% Similarity=0.355 Sum_probs=187.0
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC-------
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPD------- 906 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~------- 906 (1133)
++|++.+.||+|+||+||+|+++ +|+.||||++..... ..+.+.+|++++++++|||||++++++...+.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 46899999999999999999875 689999999965432 24578899999999999999999999864322
Q ss_pred ----cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEecc
Q 001171 907 ----VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 907 ----~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
..|+|||||++|+|.++++..... ...++..++.++.||++||+|||++||+||||||+|||++.++.+||+||
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DF 162 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTI--EERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDF 162 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSG--GGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccC
Confidence 358999999999999999864432 22456678889999999999999999999999999999999999999999
Q ss_pred CcccccccCCCC---------CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHH
Q 001171 983 GLDRLAIATPAE---------ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWV 1053 (1133)
Q Consensus 983 g~a~~~~~~~~~---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~ 1053 (1133)
|+|+........ .......+||+.|||||++.+..|+.++||||+||++|||++ ||... .+....+
T Consensus 163 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~--~~~~~~~ 237 (299)
T 4g31_A 163 GLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ--MERVRTL 237 (299)
T ss_dssp CCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH--HHHHHHH
T ss_pred ccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc--cHHHHHH
Confidence 999865432211 112234579999999999999999999999999999999996 77432 2222222
Q ss_pred HHHhhhccccccccCCcCCCCCCChhHHHH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1054 KKQLQRGQISELLEPGLLELDPESSEWEEF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. .....++. .+... ....+++.+||+.||++|||+.|++++
T Consensus 238 ~~-~~~~~~p~--------------~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 238 TD-VRNLKFPP--------------LFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp HH-HHTTCCCH--------------HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HH-HhcCCCCC--------------CCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 21 12221111 11111 122378999999999999999999974
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-44 Score=440.70 Aligned_cols=461 Identities=21% Similarity=0.254 Sum_probs=316.7
Q ss_pred EEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhccc
Q 001171 74 RELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHN 153 (1133)
Q Consensus 74 ~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N 153 (1133)
+.+++.++++++ +|..+. ++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 567777777775 666554 78889999999988777778888999999999999988777888888888888887777
Q ss_pred ccCCCccCccCCcceEEEccCCcCCC-CCCCCCCCCCcCcEEeccCCcCCCCCcccccCcccc--ceEecccccc--cCC
Q 001171 154 LLSGKISADISPSLRYLDLSSNAFTG-EIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQEL--EYLWLDSNHL--YGT 228 (1133)
Q Consensus 154 ~l~~~~~~~~~~~l~~L~Ls~N~~~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~ 228 (1133)
+++ .+|..-.++|++|+|++|++++ .+|..|+++++|++|++++|++++. .++.+++| ++|++++|++ ++.
T Consensus 111 ~l~-~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 111 RLQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CCC-EECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred cCC-ccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 776 3444444667777777777765 3456666667777777777766642 23334444 6666666666 666
Q ss_pred CCccccCcc-ccceeeccccccCCCCCC-cccCcCcccEEEcccCCccC-CcccccccCcccccccccEEeccCCccccc
Q 001171 229 LPSAISNCS-SLVHLSAEDNVLKGLIPG-TIGRISTLQVLSLSRNELTG-LVPVSVLCNLWGNISSLRIVQLGFNAFTGV 305 (1133)
Q Consensus 229 ~p~~l~~l~-~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~ 305 (1133)
.|..+.++. ....+++++|.+.+.++. .+..+++|+.|++++|+..- .++..+ ..+..+++|+.+++.++.
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~~---- 260 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHIE---- 260 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEEE----
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCCc----
Confidence 666655543 122445566665554433 34556666666666654110 000000 001233344444333222
Q ss_pred ccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCccc-----CCCCCCcEEEccCCcccccCc
Q 001171 306 VKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAV-----GSLDKLEVLRVANNSLSGLVP 380 (1133)
Q Consensus 306 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~~ 380 (1133)
+++|.+.++. ..+ ..++|++|++++|.++|.+|..+ .+++.|+.++++.|.+ .+|
T Consensus 261 ----------------l~~~~~~~~~-~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p 320 (562)
T 3a79_B 261 ----------------TTWKCSVKLF-QFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS 320 (562)
T ss_dssp ----------------ECHHHHHHHH-HHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC
T ss_pred ----------------CcHHHHHHHH-Hhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC
Confidence 2223333332 222 23589999999999998888877 7777788888888877 234
Q ss_pred -hhhcc---CCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeeccccccccc--CChh
Q 001171 381 -DEIAK---CSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGN--IPEE 454 (1133)
Q Consensus 381 -~~~~~---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~--~~~~ 454 (1133)
..+.. ..+|++|++++|.+.... ....+++|++|++++|.+++.+|..|.++++|++|++++|++++. .|..
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 398 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred hhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh
Confidence 33332 267999999999886322 226788899999999999988888899999999999999998863 3456
Q ss_pred hcCCCCCcEEecccCcCCCCCCC-CCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCC
Q 001171 455 ITRLSNLTTLNLSYNKFGGKVPY-DVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSL 533 (1133)
Q Consensus 455 l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 533 (1133)
+.++++|++|+|++|++++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..++++++|
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 88889999999999998874444 577888888888888888877776654 67888888888887 677777788888
Q ss_pred cEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCC
Q 001171 534 QVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIP 572 (1133)
Q Consensus 534 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 572 (1133)
++|+|++|++++..+..|..+++|++|++++|.+.+..+
T Consensus 476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 888888888885444447778888888888888776543
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-43 Score=434.61 Aligned_cols=457 Identities=21% Similarity=0.228 Sum_probs=266.8
Q ss_pred chhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccc
Q 001171 144 NLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSN 223 (1133)
Q Consensus 144 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N 223 (1133)
..+++++++|.++. +|..+++++++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCcc-CCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 34677888888874 77777788888888888888777777888888888888888888777777888888888888888
Q ss_pred cccCCCCccccCccccceeeccccccCCCC-CCcccCcCcccEEEcccCCccCCcccccccCcccccccc--cEEeccCC
Q 001171 224 HLYGTLPSAISNCSSLVHLSAEDNVLKGLI-PGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSL--RIVQLGFN 300 (1133)
Q Consensus 224 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L--~~l~l~~n 300 (1133)
+++ .+|.. .+++|++|++++|+++++. |..|+++++|++|+|++|++++.. +..+++| +.|++++|
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~--------~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--------LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT--------TGGGTTSCEEEEEEEES
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc--------hhhhhhceeeEEEeecc
Confidence 877 56655 6778888888888877643 567777788888888877776421 1233333 55555554
Q ss_pred cccccccCCCCCccccccEEeccCCcccccCCchhhccc-ccceeeccCceeecccCc-ccCCCCCCcEEEccCCc----
Q 001171 301 AFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVT-SLRVMDLSGNFFSGNLPA-AVGSLDKLEVLRVANNS---- 374 (1133)
Q Consensus 301 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~---- 374 (1133)
.+.. ++..|..|..+. ..-.+++++|.+.+.++. .+..+++|+.|++++|+
T Consensus 180 ~l~~-----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 180 SYHI-----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp SCCC-----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred cccc-----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 4400 444455554433 111345566665554443 34556666666666663
Q ss_pred -ccccCchhhccCCCccEEEccCCcccccC----CCccCCCCCCcEEEccCCcCccccCccc-----cCccccceeeccc
Q 001171 375 -LSGLVPDEIAKCSLLQMFDLEGNRFSGQV----PAFLGGIRGLKIVSLGRNMFSGLIPLSF-----GNLSQLETLNLSE 444 (1133)
Q Consensus 375 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~ 444 (1133)
+.+. ...+..+++|+.|+|+++.+++.. +..+ ..++|++|++++|.+++.+|..+ .+++.|+.++++.
T Consensus 237 ~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 237 RLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp HHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred hHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence 1111 234555666666666655554211 1111 12356666666666666566555 5566666666666
Q ss_pred ccccccCC-hhhcC---CCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCC
Q 001171 445 NDIRGNIP-EEITR---LSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLS 520 (1133)
Q Consensus 445 N~i~~~~~-~~l~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 520 (1133)
|.+ .+| ..+.. ..+|++|++++|.+.... ..+.+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred cee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 665 233 22222 245777777777664221 1144555555555555555555555555555555555555555
Q ss_pred CCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCC-cccccccccceeecccCccCCCCCccc
Q 001171 521 GELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIP-ATYGFLRSLVFLSLSHNQISGMIPAEL 599 (1133)
Q Consensus 521 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l 599 (1133)
+.. ..|..|.++++|++|++++|++++.+| ..+..+++|++|++++|++++..|..+
T Consensus 391 ~~~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 391 NFF----------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp BTT----------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred Ccc----------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 311 112334444444444444444444222 234445555555555555554444433
Q ss_pred cCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchh-hhccCCCcEEEeecCCCCccC
Q 001171 600 GACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKE-ISKCSSLVSLTLDMNSLSGRI 667 (1133)
Q Consensus 600 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~ 667 (1133)
. ++|++|+|++|+++ .+|..+..+++|+.|+|++|+|+ .+|.. +..+++|+.|++++|.+.+..
T Consensus 449 ~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 2 45666666666666 45555556666666666666666 34444 666677777777777766543
No 40
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=408.85 Aligned_cols=268 Identities=20% Similarity=0.304 Sum_probs=206.6
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCC-----CCc
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGP-----PDV 907 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~-----~~~ 907 (1133)
++|++.++||+|+||+||+|+++ +|+.||||++...... .+.+.+|+++|++++|||||++++++... ...
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999875 6999999999754433 35678899999999999999999987642 245
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.|+|||||+ |+|.+++... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~-----~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSS-----QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSS-----SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEeCCC-CCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeee
Confidence 699999995 7899999753 3489999999999999999999999999999999999999999999999999986
Q ss_pred cccCCC-CCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 988 AIATPA-EASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 988 ~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
...... ........+||+.|||||++.+. .++.++||||+||++|||++|++||.+.+..+....+.+..........
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~ 287 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVI 287 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGT
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHh
Confidence 543222 22334567899999999998775 4689999999999999999999999888777776666654432211100
Q ss_pred ccCC-------cCCCC-CCChhHHHH-----HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 LEPG-------LLELD-PESSEWEEF-----LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~~-------~~~~~-~~~~~~~~~-----~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... ...++ .....+... ..+.+++.+||..||++|||++|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 288 QAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp C-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred hhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 0000 00000 001111111 123489999999999999999999975
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-42 Score=409.98 Aligned_cols=428 Identities=24% Similarity=0.302 Sum_probs=219.7
Q ss_pred hhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccCCcceE
Q 001171 90 QLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRY 169 (1133)
Q Consensus 90 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 169 (1133)
.--+.++|+.|++++|++ |.+|.+++++++|+.|++++|+++|.+|.+++++++|+++++.++.. .++++
T Consensus 6 ~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~---------~~l~~ 75 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD---------RQAHE 75 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH---------HTCSE
T ss_pred cccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc---------cCCCE
Confidence 333568999999999999 89999999999999999999999999999999999999999887653 46889
Q ss_pred EEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeecccccc
Q 001171 170 LDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVL 249 (1133)
Q Consensus 170 L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 249 (1133)
|++++|.+++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|... ++|++|++++|++
T Consensus 76 L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~---~~L~~L~L~~n~l 143 (454)
T 1jl5_A 76 LELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLP---PLLEYLGVSNNQL 143 (454)
T ss_dssp EECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCC---TTCCEEECCSSCC
T ss_pred EEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCC---CCCCEEECcCCCC
Confidence 9999999986 3442 3689999999999997 7754 3789999999998874 34321 5788888888888
Q ss_pred CCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccc
Q 001171 250 KGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRA 329 (1133)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~ 329 (1133)
++ +| .|+++++|++|++++|++++ +|... .+|+.|++++|.+++
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--------~~L~~L~L~~n~l~~------------------------- 187 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--------PSLEFIAAGNNQLEE------------------------- 187 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--------TTCCEEECCSSCCSS-------------------------
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--------ccccEEECcCCcCCc-------------------------
Confidence 87 45 58888888888888888875 34221 355555555555554
Q ss_pred cCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCC
Q 001171 330 VFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGG 409 (1133)
Q Consensus 330 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 409 (1133)
+ | .|.++++|++|++++|++++ +|... ++|++|++++|+++ .+| .+..+++|++|++++|++++ +|..
T Consensus 188 l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~--- 255 (454)
T 1jl5_A 188 L-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL--- 255 (454)
T ss_dssp C-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---
T ss_pred C-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---
Confidence 3 2 24445555555555555543 22211 34555555555554 223 24455555555555555543 2221
Q ss_pred CCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCC-CCCcEE
Q 001171 410 IRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNL-KGLLVL 488 (1133)
Q Consensus 410 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L 488 (1133)
+++|+.|++++|.+++ +|.. .++|++|++++|++++. +. -.++|++|++++|++++. + .+ ++|++|
T Consensus 256 ~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L 322 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-C----DLPPSLEEL 322 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEE
T ss_pred ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEE
Confidence 2455555555555554 2322 24555566666655542 11 014566666666666531 1 22 356666
Q ss_pred EcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccc--cCCCCCCCCccCcEEEccccc
Q 001171 489 NLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSG--DVPEGFSSLVGLQYLNLSDNA 566 (1133)
Q Consensus 489 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 566 (1133)
++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.. |+.|.
T Consensus 323 ~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~ 386 (454)
T 1jl5_A 323 NVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNS 386 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC
T ss_pred ECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcc
Confidence 666666664 3433 356777777777776 3454 35677777777777776 45554432 23455
Q ss_pred ccCCCCcccccccccceeecccCccCC--CCCccccCCCCccEEEecCCcccCCCcccccc
Q 001171 567 FTGDIPATYGFLRSLVFLSLSHNQISG--MIPAELGACSALEVLELRSNHFTGNIPVDISH 625 (1133)
Q Consensus 567 l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 625 (1133)
+.+.+|.. +++|++|++++|++++ .+|. +|+.|.+.+|.+.+.++.+...
T Consensus 387 ~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 387 HLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp -------------------------------------------------------------
T ss_pred cccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 55555543 4678888888888876 4443 3566677788777666555443
No 42
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=2.3e-43 Score=401.99 Aligned_cols=201 Identities=21% Similarity=0.383 Sum_probs=169.6
Q ss_pred HhcCCCcccccccccceeEEEEEEC----CceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~ 909 (1133)
..++|++.++||+|+||+||+|+++ .++.||+|++.... ....+.+|+++++++ +|||||++++++.+. +..|
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~-~~~~ 96 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-HPIRIAAELQCLTVAGGQDNVMGVKYCFRKN-DHVV 96 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-CHHHHHHHHHHHHHTCSBTTBCCCSEEEEET-TEEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-CHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CEEE
Confidence 4578999999999999999999763 47899999986543 456788999999998 699999999999876 4559
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC-CceEEeccCccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD-FEAHLSEFGLDRLA 988 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~-~~~kl~Dfg~a~~~ 988 (1133)
+||||+++|+|.++++. +++..+..++.||+.||+|||++||+||||||+|||++.+ +.+||+|||+|+..
T Consensus 97 lvmE~~~g~~L~~~~~~--------l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~ 168 (361)
T 4f9c_A 97 IAMPYLEHESFLDILNS--------LSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT 168 (361)
T ss_dssp EEEECCCCCCHHHHHTT--------CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEEeCCCcccHHHHHcC--------CCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence 99999999999999853 7899999999999999999999999999999999999877 79999999999754
Q ss_pred ccCCCC-------------------------CCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCc
Q 001171 989 IATPAE-------------------------ASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVM 1042 (1133)
Q Consensus 989 ~~~~~~-------------------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~ 1042 (1133)
...... .......+||+.|||||++.+. .|+.++||||+||++|||++|+.||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 169 HDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp TTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred CCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence 332110 0112345799999999999775 58999999999999999999999996
Q ss_pred cCC
Q 001171 1043 FTQ 1045 (1133)
Q Consensus 1043 ~~~ 1045 (1133)
...
T Consensus 249 ~~~ 251 (361)
T 4f9c_A 249 KAS 251 (361)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.7e-42 Score=406.99 Aligned_cols=420 Identities=25% Similarity=0.326 Sum_probs=254.4
Q ss_pred CCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEE
Q 001171 188 KSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLS 267 (1133)
Q Consensus 188 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 267 (1133)
.+.|++|++++|++ |.+|.+++++++|++|++++|+++|.+|..++++++|+.+++..+.. .+|++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46788888888888 68888888888888888888888888888888888887777776643 4677788
Q ss_pred cccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeecc
Q 001171 268 LSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLS 347 (1133)
Q Consensus 268 Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 347 (1133)
+++|.+++. |. + .+ .|++|++++|+++++ |+. +++|++|+++
T Consensus 78 l~~~~l~~l-p~-~-------~~-------------------------~L~~L~l~~n~l~~l-p~~---~~~L~~L~l~ 119 (454)
T 1jl5_A 78 LNNLGLSSL-PE-L-------PP-------------------------HLESLVASCNSLTEL-PEL---PQSLKSLLVD 119 (454)
T ss_dssp CTTSCCSCC-CS-C-------CT-------------------------TCSEEECCSSCCSSC-CCC---CTTCCEEECC
T ss_pred ecCCccccC-CC-C-------cC-------------------------CCCEEEccCCcCCcc-ccc---cCCCcEEECC
Confidence 888877652 21 0 12 345555555555554 332 3678888888
Q ss_pred CceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCcccc
Q 001171 348 GNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLI 427 (1133)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 427 (1133)
+|++++ +|.. .++|++|++++|++++ +| .+.++++|++|++++|++++ +|..+ .+|++|++++|.+++ +
T Consensus 120 ~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l 188 (454)
T 1jl5_A 120 NNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-L 188 (454)
T ss_dssp SSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-C
T ss_pred CCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-C
Confidence 888874 3322 2689999999999987 56 58999999999999999986 55543 589999999999987 4
Q ss_pred CccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcc
Q 001171 428 PLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLM 507 (1133)
Q Consensus 428 p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 507 (1133)
| .|+++++|++|++++|++++ +|.. .++|++|++++|.++ .+| .++.+++|++|++++|++++ +|.. ++
T Consensus 189 ~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 257 (454)
T 1jl5_A 189 P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PP 257 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CT
T ss_pred c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---cc
Confidence 5 68899999999999999885 4432 258889999999888 566 48888889999999988885 4432 36
Q ss_pred cccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccc-cccceeec
Q 001171 508 RLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFL-RSLVFLSL 586 (1133)
Q Consensus 508 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L 586 (1133)
+|++|++++|++++ +|.. .++|++|++++|++++. |.. .++|++|++++|++++. + .+ ++|++|++
T Consensus 258 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~L 324 (454)
T 1jl5_A 258 SLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNV 324 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEEC
T ss_pred ccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEEC
Confidence 78888888888885 4543 37788888888888762 211 15788888888888752 2 22 47888888
Q ss_pred ccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccC--cCchhhhccCCCcEEEeecCCCC
Q 001171 587 SHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSG--EIPKEISKCSSLVSLTLDMNSLS 664 (1133)
Q Consensus 587 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~ 664 (1133)
++|++++ +|.. +++|++|++++|++++ +|. .+++|++|+|++|++++ .+|.++.. ++.|.+.
T Consensus 325 s~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~ 388 (454)
T 1jl5_A 325 SNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHL 388 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--
T ss_pred CCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccc
Confidence 8888875 5543 4778888888888874 665 36778888888888876 56665543 3456666
Q ss_pred ccCCccccCcccccccccccccccc--cCCccccccccCcccccccccccccCCc
Q 001171 665 GRIPESFSKLSNLTTLNLSTNRLSG--AIPADLALISSLRYLNLSRNNLEGEIPK 717 (1133)
Q Consensus 665 ~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 717 (1133)
+.+|.. +++|+.||+++|++++ .+|.+ ++.|.+++|.+.+.+|.
T Consensus 389 ~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 389 AEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp -------------------------------------------------------
T ss_pred cccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 666653 4678888888888876 55543 45566777777776664
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.8e-42 Score=408.32 Aligned_cols=384 Identities=22% Similarity=0.248 Sum_probs=298.3
Q ss_pred cccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccC-chhhccCCCccEEEc
Q 001171 316 VLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLV-PDEIAKCSLLQMFDL 394 (1133)
Q Consensus 316 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 394 (1133)
.-+.++.++++++.++ . + .++|++|||++|.|++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|
T Consensus 11 ~~~~~~c~~~~l~~lp-~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 11 IGYNAICINRGLHQVP-E-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp ETTEEECCSSCCSSCC-C-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred EccccCcCCCCcccCC-C-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 3455677777777763 3 2 267778888888887777777788888888888888776433 566777888888888
Q ss_pred cCCcccccCCCccCCCCCCcEEEccCCcCccccCcc--ccCccccceeecccccccccCChh-hcCCCCCcEEecccCcC
Q 001171 395 EGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLS--FGNLSQLETLNLSENDIRGNIPEE-ITRLSNLTTLNLSYNKF 471 (1133)
Q Consensus 395 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~i~~~~~~~-l~~l~~L~~L~Ls~N~l 471 (1133)
++|++++..|..|+++++|++|+|++|.+++..+.. |.++++|++|++++|++++..|.. +.++++|++|++++|++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 888887777777888888888888888887644443 777888888888888888776665 67788888888888888
Q ss_pred CCCCCCCCCCC--CCCcEEEcccCCCccccCCC--------cCCcccccEEeccccCCCCCCChhccCC---CCCcEeec
Q 001171 472 GGKVPYDVGNL--KGLLVLNLSASGFSGKIPGS--------IGSLMRLTTLDLSNQNLSGELPIELFGL---PSLQVVSL 538 (1133)
Q Consensus 472 ~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~L 538 (1133)
++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 87777777766 67778888888777654443 3356788888888888887777766543 77888888
Q ss_pred cCCcccccCCCCCCCCccCcEEEcccccccCCCCccccc--ccccceeecccCccCCCCCccccCCCCccEEEecCCccc
Q 001171 539 EENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGF--LRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFT 616 (1133)
Q Consensus 539 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 616 (1133)
++|.+.+... ..+.+.+..+..+.. .++|++|++++|++++..|..++.+++|++|+|++|+++
T Consensus 247 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 247 SNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp TTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence 8887654311 122333333333333 367899999999999888888999999999999999999
Q ss_pred CCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcccc
Q 001171 617 GNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLA 696 (1133)
Q Consensus 617 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 696 (1133)
+..|..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+.
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 87788888999999999999999888888899999999999999999988899999999999999999999976666778
Q ss_pred ccccCcccccccccccccCCc
Q 001171 697 LISSLRYLNLSRNNLEGEIPK 717 (1133)
Q Consensus 697 ~l~~L~~L~ls~N~l~~~~p~ 717 (1133)
.+++|++|++++|+++|.+|.
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTTT
T ss_pred cCCcccEEEccCCCcccCCCc
Confidence 999999999999999999984
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-41 Score=406.91 Aligned_cols=388 Identities=17% Similarity=0.197 Sum_probs=217.2
Q ss_pred CCccce--eeeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCC-
Q 001171 60 PCDWRG--IVCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLP- 136 (1133)
Q Consensus 60 ~c~w~g--v~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p- 136 (1133)
.|.|.+ |.|++..++ .+|. + .++|++|||++|++++..|..++++++|+.|+|++|.+.+.+|
T Consensus 7 ~c~~~~~~~~c~~~~l~-----------~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~ 72 (455)
T 3v47_A 7 ECSVIGYNAICINRGLH-----------QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN 72 (455)
T ss_dssp CCEEETTEEECCSSCCS-----------SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT
T ss_pred eeEEEccccCcCCCCcc-----------cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc
Confidence 466666 888865432 2232 1 1689999999999998888899999999999999999987775
Q ss_pred CccccccchhhhhhcccccCCCccCccC--CcceEEEccCCcCCCCCCCC--CCCCCcCcEEeccCCcCCCCCccc-ccC
Q 001171 137 LSIFNLTNLLVLNVAHNLLSGKISADIS--PSLRYLDLSSNAFTGEIPGN--FSSKSQLQLINLSYNSFSGEVPAS-VGQ 211 (1133)
Q Consensus 137 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~l~~L~Ls~N~~~~~~p~~--~~~l~~L~~L~ls~N~l~~~~p~~-~~~ 211 (1133)
..+.++++|++|+|++|++++..|..+. ++|++|+|++|++++.+|.. |..+++|++|+|++|++++..|.. ++.
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 4588888877777777666655454443 56666666666666543333 666666666666666666555554 566
Q ss_pred ccccceEecccccccCCCCccccCc--cccceeeccccccCCCCCCcc--------cCcCcccEEEcccCCccCCccccc
Q 001171 212 LQELEYLWLDSNHLYGTLPSAISNC--SSLVHLSAEDNVLKGLIPGTI--------GRISTLQVLSLSRNELTGLVPVSV 281 (1133)
Q Consensus 212 l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~l~~N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~p~~~ 281 (1133)
+++|++|++++|++++..|..+.++ .+|+.|++++|.+.+..+..+ ..+++|++|+|++|++++..|..+
T Consensus 153 l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence 6666666666666666556555554 456666666666665444332 244566666666666655544433
Q ss_pred ccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCC
Q 001171 282 LCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGS 361 (1133)
Q Consensus 282 ~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 361 (1133)
... ...++|+.|++++|.+.+.. +..+.+....+..+..+ .
T Consensus 233 ~~~--~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------------~ 273 (455)
T 3v47_A 233 FDA--IAGTKIQSLILSNSYNMGSS---------------FGHTNFKDPDNFTFKGL----------------------E 273 (455)
T ss_dssp HHH--TTTCCEEEEECTTCTTTSCC---------------TTCCSSCCCCTTTTGGG----------------------T
T ss_pred hcc--ccccceeeEeeccccccccc---------------cchhhhccCcccccccc----------------------c
Confidence 110 11245555555555443321 11112222222222222 1
Q ss_pred CCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceee
Q 001171 362 LDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLN 441 (1133)
Q Consensus 362 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 441 (1133)
.++|++|++++|++++..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 13444444444444444444444444444444444444444444444444455555555555444444555555555555
Q ss_pred cccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccC
Q 001171 442 LSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIP 500 (1133)
Q Consensus 442 L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 500 (1133)
|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 55555555445555555555555555555554444445555555555555555554443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.7e-42 Score=388.82 Aligned_cols=291 Identities=31% Similarity=0.473 Sum_probs=219.5
Q ss_pred cCchhHHHHHHHHHHhCCCCCCCccCCCCCCCCCCCc--cceeeeCC----CceEEEeeCCcccCc--ccchhhcccccC
Q 001171 26 AVVLSEIQALTSFKLHLKDPLGALDGWDSSTPSAPCD--WRGIVCYN----NRVRELRLPRLQLAG--RLTDQLADLHEL 97 (1133)
Q Consensus 26 ~~~~~~~~~l~~~k~~~~~~~~~l~~w~~~~~~~~c~--w~gv~c~~----~~v~~l~l~~~~l~g--~~~~~l~~l~~L 97 (1133)
.|.++|++||++||+++.||. .+++|+.+ .+||. |.||+|+. ++|+.|+|.+++++| .+|+.++++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~--~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC--CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 588999999999999999886 78999754 37898 99999985 689999999999999 888899999999
Q ss_pred cEEEccc-CcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccCCcceEEEccCCc
Q 001171 98 RKLSLHS-NHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNA 176 (1133)
Q Consensus 98 ~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~ 176 (1133)
++|+|++ |++.+.+|..++++++|+.|+|++|+++|.+|..+.++++| ++|+|++|.
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L----------------------~~L~Ls~N~ 136 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL----------------------VTLDFSYNA 136 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC----------------------CEEECCSSE
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC----------------------CEEeCCCCc
Confidence 9999995 88998899889999999999999999988888877776655 566667777
Q ss_pred CCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCcc-ccceEecccccccCCCCccccCccccceeeccccccCCCCCC
Q 001171 177 FTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQ-ELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPG 255 (1133)
Q Consensus 177 ~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 255 (1133)
+++.+|..|..+++|++|++++|+++|.+|..++.+. +|++|++++|++++.+|..+..++ |++|++++|++++.+|.
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH
Confidence 7777788888888888888888888888888888887 888888888888888888887776 88888888888877777
Q ss_pred cccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchh
Q 001171 256 TIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWL 335 (1133)
Q Consensus 256 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 335 (1133)
.|..+++|++|+|++|++++.+|. + ..++ +|++|+|++|+|++..|.+|
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~-~-----~~l~-------------------------~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGK-V-----GLSK-------------------------NLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGG-C-----CCCT-------------------------TCCEEECCSSCCEECCCGGG
T ss_pred HHhcCCCCCEEECCCCceeeecCc-c-----cccC-------------------------CCCEEECcCCcccCcCChHH
Confidence 778888888888888877654432 1 1222 23333333333333335555
Q ss_pred hcccccceeeccCceeecccCcccCCCCCCcEEEccCCc
Q 001171 336 TNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNS 374 (1133)
Q Consensus 336 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 374 (1133)
..+++|++|+|++|++++.+|.. +.+++|+.|++++|.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555555555555555555543 444455555555444
No 47
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3.6e-42 Score=410.76 Aligned_cols=247 Identities=19% Similarity=0.270 Sum_probs=195.4
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHH---HHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRK---EAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~---E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
++|++.++||+|+||+||+|+++ +|+.||||++.+.. .....+.+ ++++++.++|||||+++++|.+. +..
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~-~~l 267 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP-DKL 267 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS-SEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC-CEE
Confidence 57999999999999999999875 69999999996432 12233333 46677788999999999999876 455
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
|+||||++||+|.+++.+.+ .+++..+..++.||+.||+|||++|||||||||+|||++.+|++||+|||+|+..
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-----~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-----VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence 99999999999999998754 3899999999999999999999999999999999999999999999999999764
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
.. ......+||+.|||||++.+ ..|+.++|+||+||++|||++|++||......+......... ...+ . +.
T Consensus 343 ~~-----~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~-~~~~-~-~p 414 (689)
T 3v5w_A 343 SK-----KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL-TMAV-E-LP 414 (689)
T ss_dssp SS-----CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHH-HCCC-C-CC
T ss_pred CC-----CCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhc-CCCC-C-CC
Confidence 32 22345689999999999964 579999999999999999999999997654433332222221 1111 0 00
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCC-----HHHHHH
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPS-----MADIVF 1109 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs-----~~evl~ 1109 (1133)
..+ . ..+.+++.+|++.||.+|++ ++||++
T Consensus 415 ~~~------S------~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 415 DSF------S------PELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp TTS------C------HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred ccC------C------HHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 000 0 11237899999999999998 688875
No 48
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=8.1e-42 Score=413.12 Aligned_cols=252 Identities=21% Similarity=0.330 Sum_probs=206.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
.++|++.+.||+|+||+||+|.++ +|+.||+|++..... +.+.+.+|+++|++++|||||++++++.+. ...|+|||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-~~~~iv~E 234 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDD-NEMVMIYE 234 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECS-SEEEEEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-CEEEEEEe
Confidence 368999999999999999999875 699999999965433 356788999999999999999999999876 45599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC--CceEEeccCcccccccC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD--FEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~a~~~~~~ 991 (1133)
||+||+|.+++.... ..+++..+..++.||+.||+|||+++|+||||||+|||++.+ +.+||+|||+|+.....
T Consensus 235 ~~~gg~L~~~i~~~~----~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~ 310 (573)
T 3uto_A 235 FMSGGELFEKVADEH----NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK 310 (573)
T ss_dssp CCCCCBHHHHHTCTT----SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred ecCCCcHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence 999999999996432 348899999999999999999999999999999999999854 89999999999865322
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||...+..+....+.... ..+.....+.+
T Consensus 311 ----~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~- 383 (573)
T 3uto_A 311 ----QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCD--WNMDDSAFSGI- 383 (573)
T ss_dssp ----SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTC--CCCCSGGGTTS-
T ss_pred ----CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCC--CCCCcccccCC-
Confidence 22334579999999999999999999999999999999999999998777766655544321 11111110100
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
. ..+.+++.+||+.||++||++.|++++
T Consensus 384 -----s------~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 384 -----S------EDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp -----C------HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred -----C------HHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0 112378999999999999999999885
No 49
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.5e-40 Score=373.93 Aligned_cols=263 Identities=25% Similarity=0.437 Sum_probs=203.6
Q ss_pred HhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
..++|++.+.||+|+||+||+|++ .|+.||||++...... .+.+.+|++++++++||||+++++++..... .++|
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~-~~lv 112 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN-LSIV 112 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC-CEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc-eEEE
Confidence 456899999999999999999987 4889999999765433 3468899999999999999999999987655 4999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC--ceecccCccceeeCCCCceEEeccCcccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD--MVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
|||+++|+|.+++..... ...+++..+..++.||+.||+|||++| |+||||||+||+++.++.+||+|||+++...
T Consensus 113 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~ 190 (309)
T 3p86_A 113 TEYLSRGSLYRLLHKSGA--REQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA 190 (309)
T ss_dssp EECCTTCBHHHHHHSTTH--HHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC------
T ss_pred EecCCCCcHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccc
Confidence 999999999999986332 123889999999999999999999999 9999999999999999999999999986432
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. ........||+.|+|||++.+..++.++||||+||++|||++|+.||......+....+........++..++
T Consensus 191 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~-- 265 (309)
T 3p86_A 191 ST---FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLN-- 265 (309)
T ss_dssp --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSC--
T ss_pred cc---ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCC--
Confidence 21 1223445799999999999999999999999999999999999999987766655544433222111111111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDM 1120 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~ 1120 (1133)
. ...+++.+||+.||++||+++|+++.|+.+......
T Consensus 266 --------~------~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p 302 (309)
T 3p86_A 266 --------P------QVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVP 302 (309)
T ss_dssp --------H------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC----
T ss_pred --------H------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCC
Confidence 1 123788999999999999999999999998775443
No 50
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=376.18 Aligned_cols=268 Identities=25% Similarity=0.415 Sum_probs=210.4
Q ss_pred hcCCCcccccccccceeEEEEEEC----CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.++||+|+||.||+|.+. .+..||||++..... ..+.+.+|++++++++||||+++++++.... ..+
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 126 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR-LAM 126 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGG-CCE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC-ccE
Confidence 457999999999999999999874 456799999975432 2457899999999999999999999997764 459
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.++++... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++...
T Consensus 127 lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 202 (325)
T 3kul_A 127 IVTEYMENGSLDTFLRTHD----GQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLE 202 (325)
T ss_dssp EEEECCTTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred EEeeCCCCCcHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence 9999999999999997532 348999999999999999999999999999999999999999999999999997654
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
.............+|+.|+|||++.+..++.++||||+||++|||++ |+.||......+....+....... ...
T Consensus 203 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~-----~~~ 277 (325)
T 3kul_A 203 DDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLP-----APM 277 (325)
T ss_dssp ----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCC-----CCT
T ss_pred cCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCC-----CCC
Confidence 43332223334457788999999988889999999999999999999 999998777666555543321110 000
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCCCCC
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPSSAD 1125 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~~~~ 1125 (1133)
. .. . ...+++.+||+.||++||++.||++.|+.+...+...+...
T Consensus 278 ~------~~----~--~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~~~~~ 322 (325)
T 3kul_A 278 G------CP----H--ALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESLRATA 322 (325)
T ss_dssp T------CC----H--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC------
T ss_pred C------cC----H--HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcccccccC
Confidence 0 00 1 12378899999999999999999999999887766654443
No 51
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=9.7e-40 Score=371.33 Aligned_cols=285 Identities=35% Similarity=0.672 Sum_probs=227.0
Q ss_pred cccHHHHHHHhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeC
Q 001171 826 KITYVETLEATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAG 903 (1133)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 903 (1133)
.+++.+.....++|++.++||+|+||.||+|++++|+.||||++..... ....+.+|++++++++||||+++++++..
T Consensus 19 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 98 (326)
T 3uim_A 19 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT 98 (326)
T ss_dssp ECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECC
T ss_pred eecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEec
Confidence 4667788889999999999999999999999988899999999975432 23478999999999999999999999987
Q ss_pred CCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC---CceecccCccceeeCCCCceEEe
Q 001171 904 PPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL---DMVHGDIKPQNVLFDADFEAHLS 980 (1133)
Q Consensus 904 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~ 980 (1133)
.... ++||||+++|+|.+++..... ....+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 99 ~~~~-~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~ 176 (326)
T 3uim_A 99 PTER-LLVYPYMANGSVASCLRERPE-SQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176 (326)
T ss_dssp SSCC-EEEEECCTTCBHHHHHHCCST-TCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred CCce-EEEEEeccCCCHHHHHHhccc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence 6544 899999999999999986443 234589999999999999999999999 99999999999999999999999
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCcc-----CChhhHHHHHHH
Q 001171 981 EFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMF-----TQDEDIVKWVKK 1055 (1133)
Q Consensus 981 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~-----~~~~~~~~~~~~ 1055 (1133)
|||+++...... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.. ........++..
T Consensus 177 Dfg~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 254 (326)
T 3uim_A 177 DFGLAKLMDYKD--THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254 (326)
T ss_dssp CCSSCEECCSSS--SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred cCccccccCccc--ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence 999997553221 2223345699999999999888899999999999999999999999952 223334555544
Q ss_pred HhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1056 QLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
...........+...... ..........+++.+||+.||.+|||+.||+++|++.....
T Consensus 255 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~~~ 313 (326)
T 3uim_A 255 LLKEKKLEALVDVDLQGN----YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAE 313 (326)
T ss_dssp TTSSCCSTTSSCTTCTTS----CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSCSS
T ss_pred HhhchhhhhhcChhhccc----cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcchhh
Confidence 444444444444433211 11222333448999999999999999999999999754443
No 52
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=6.9e-40 Score=361.55 Aligned_cols=257 Identities=23% Similarity=0.411 Sum_probs=213.1
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|.+.+++.||+|++.......+.+.+|++++++++||||+++++++.+.. ..++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA-PICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS-SEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-ceEEEEEeC
Confidence 3578999999999999999999988999999999887777889999999999999999999999998764 459999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
++++|.+++.... ..+++..+..++.|+++|++|||+.||+||||||+||+++.++.+||+|||+++..... ..
T Consensus 88 ~~~~L~~~l~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~ 161 (269)
T 4hcu_A 88 EHGCLSDYLRTQR----GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD--QY 161 (269)
T ss_dssp TTCBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH--HH
T ss_pred CCCcHHHHHHhcC----cccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccc--cc
Confidence 9999999997533 34889999999999999999999999999999999999999999999999998754321 11
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
.......+++.|+|||++.+..++.++||||+|+++|||++ |+.||......+....+...... ..+..
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~------~~~~~---- 231 (269)
T 4hcu_A 162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRL------YKPRL---- 231 (269)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCC------CCCTT----
T ss_pred ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccC------CCCCc----
Confidence 22334557788999999988889999999999999999999 99999877666555544332110 00000
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
... ...+++.+||+.||++||++.|++++|+++..
T Consensus 232 -~~~------~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 232 -AST------HVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp -SCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CCH------HHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 011 12378889999999999999999999998654
No 53
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=3e-39 Score=365.81 Aligned_cols=247 Identities=17% Similarity=0.260 Sum_probs=204.2
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.+.||+|+||.||+|.+ .+|+.||||++...... .+.+.+|++++++++||||+++++++... ...++|
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~-~~~~lv 92 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETE-KTLYLI 92 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-CEEEEE
Confidence 45799999999999999999987 57999999999654333 35678999999999999999999999876 455999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++...+ .+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 93 ~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 167 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHG-----RMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG 167 (328)
T ss_dssp ECCCTTCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS
T ss_pred EECCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCC
Confidence 99999999999998753 3889999999999999999999999999999999999999999999999998754321
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCC-CCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPT-KEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
......+||+.|+|||++.+..++ .++||||+||++|||++|+.||...+..+....+..... .++..
T Consensus 168 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~--~~p~~----- 236 (328)
T 3fe3_A 168 ----GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY--RIPFY----- 236 (328)
T ss_dssp ----CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC--CCCTT-----
T ss_pred ----CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC--CCCCC-----
Confidence 233456799999999999887764 789999999999999999999987776665554443210 11100
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... ...+++.+|++.||.+|||++|++++
T Consensus 237 -----~s~------~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 237 -----MST------DCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp -----SCH------HHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred -----CCH------HHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 011 12378899999999999999999976
No 54
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.9e-39 Score=357.85 Aligned_cols=258 Identities=22% Similarity=0.393 Sum_probs=213.4
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|+++++..||+|++.......+.+.+|++++++++||||+++++++... ...++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKE-YPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccC-CceEEEEEcc
Confidence 467999999999999999999999899999999988777788899999999999999999999999776 4459999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
++++|.+++..... .+++..++.++.|++.|++|||+.||+||||||+||+++.++.++|+|||+++.......
T Consensus 86 ~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-- 159 (268)
T 3sxs_A 86 SNGCLLNYLRSHGK----GLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY-- 159 (268)
T ss_dssp TTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE--
T ss_pred CCCcHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhh--
Confidence 99999999987532 388999999999999999999999999999999999999999999999999975433221
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
.......+++.|+|||++.+..++.++||||+|+++|||++ |+.||......+....+..... ...+..
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~------~~~~~~---- 229 (268)
T 3sxs_A 160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHR------LYRPHL---- 229 (268)
T ss_dssp EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC------CCCCTT----
T ss_pred hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCC------CCCCCc----
Confidence 22234456778999999988889999999999999999999 9999987666554444322110 000100
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
... ...+++.+||+.||++||++.|++++|+.+...
T Consensus 230 -~~~------~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 230 -ASD------TIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp -SCH------HHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred -ChH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 011 123788999999999999999999999998764
No 55
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=2.2e-39 Score=374.00 Aligned_cols=261 Identities=22% Similarity=0.331 Sum_probs=209.8
Q ss_pred hcCCCcccccccccceeEEEEEE--------CCceEEEEEEcccCCc--CHHHHHHHHHHHhhc-cCCCeeeEEEEEeCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY--------QDGMVLSIRRLRDGTI--DENTFRKEAEALGKV-KHRNLTVLRGYYAGP 904 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~ 904 (1133)
.++|++.+.||+|+||.||+|++ .++..||||++..... ..+.+.+|+++++++ +||||+++++++...
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 46899999999999999999976 2467899999975432 235788999999999 899999999999876
Q ss_pred CCcEEEEEeccCCCCHHHHHHhhcc-----------CCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC
Q 001171 905 PDVRLLVYDYMPNGNLATLLQEASH-----------QDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA 973 (1133)
Q Consensus 905 ~~~~~lV~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~ 973 (1133)
.. .++||||+++|+|.+++...+. .....+++..+..++.||++||+|||++||+||||||+||+++.
T Consensus 160 ~~-~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~ 238 (370)
T 2psq_A 160 GP-LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTE 238 (370)
T ss_dssp SS-CEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT
T ss_pred CC-EEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECC
Confidence 44 5999999999999999987542 12345889999999999999999999999999999999999999
Q ss_pred CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHH
Q 001171 974 DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKW 1052 (1133)
Q Consensus 974 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~ 1052 (1133)
++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+....
T Consensus 239 ~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~ 317 (370)
T 2psq_A 239 NNVMKIADFGLARDINNIDY-YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 317 (370)
T ss_dssp TCCEEECCCSSCEETTCCCT-TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHH
T ss_pred CCCEEEccccCCcccCcccc-eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 99999999999975433221 122334567889999999998899999999999999999999 9999987776665554
Q ss_pred HHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1053 VKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
+..... ... +.... . ...+++.+||+.||++||++.|+++.|+.+.
T Consensus 318 ~~~~~~----~~~--------~~~~~---~--~l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 318 LKEGHR----MDK--------PANCT---N--ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp HHTTCC----CCC--------CTTSC---H--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HhcCCC----CCC--------CCCCC---H--HHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 433211 000 00000 0 1237888999999999999999999998754
No 56
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=370.09 Aligned_cols=250 Identities=23% Similarity=0.337 Sum_probs=197.9
Q ss_pred HhcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
..++|++.+.||+|+||+||+|.+ .+|+.||||++..... ..+.+.+|++++++++||||+++++++.... ..++|
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~-~~~lv 86 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETAN-KIFMV 86 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSS-EEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC-EEEEE
Confidence 356899999999999999999987 4689999999865432 2457899999999999999999999998764 55999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++...+ .+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||++......
T Consensus 87 ~E~~~gg~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 161 (347)
T 3zgw_A 87 LEYCPGGELFDYIISQD-----RLSEEETRVVFRQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGN 161 (347)
T ss_dssp EECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC----
T ss_pred EeCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCC
Confidence 99999999999997653 3889999999999999999999999999999999999999999999999998643221
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
........+||+.|+|||++.+..+ +.++||||+||++|||++|+.||...+..+....+.... ..++..+
T Consensus 162 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~p~~~---- 233 (347)
T 3zgw_A 162 --KDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMALYKKIMRGK--YDVPKWL---- 233 (347)
T ss_dssp ------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC--CCCCTTC----
T ss_pred --CCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC--CCCCCCC----
Confidence 1122345679999999999988775 899999999999999999999998766665555444321 1111100
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. ...+++.+||+.||++|||++|++++
T Consensus 234 ------s~------~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 234 ------SP------SSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp ------CH------HHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred ------CH------HHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 11 12368899999999999999999975
No 57
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=3.4e-39 Score=365.86 Aligned_cols=277 Identities=30% Similarity=0.561 Sum_probs=221.1
Q ss_pred HHHhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 833 LEATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 833 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
...+++|++.+.||+|+||.||+|.+++|+.||||++..... ..+.+.+|++++++++||||+++++++..... .++|
T Consensus 35 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~lv 113 (321)
T 2qkw_B 35 EEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE-MILI 113 (321)
T ss_dssp CCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTC-CEEE
T ss_pred HHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCe-EEEE
Confidence 346779999999999999999999988899999999875433 35678999999999999999999999987644 4999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++..... ....+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 114 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 192 (321)
T 2qkw_B 114 YKYMENGNLKRHLYGSDL-PTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTEL 192 (321)
T ss_dssp EECCTTCBTGGGSSSSCC-CSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSS
T ss_pred EEcCCCCcHHHHHhccCC-CccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccccccc
Confidence 999999999998865432 2235899999999999999999999999999999999999999999999999998754222
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChh---hHHHHHHHHhhhccccccccC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE---DIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
. .........||+.|+|||++.+..++.++||||+||++|||++|+.||...... ....+.........+...+++
T Consensus 193 ~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (321)
T 2qkw_B 193 D-QTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDP 271 (321)
T ss_dssp S-CCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSS
T ss_pred c-ccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcCh
Confidence 1 112233456899999999998888999999999999999999999999654332 334444444445555555555
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
...... .........+++.+||+.||++||++.|++++|+....
T Consensus 272 ~~~~~~----~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 272 NLADKI----RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp SCTTCS----CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hhcccc----CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 443211 11222233489999999999999999999999987654
No 58
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=4.1e-39 Score=360.38 Aligned_cols=250 Identities=20% Similarity=0.310 Sum_probs=203.2
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccC-CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDG-TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
.++|++.+.||+|+||+||+|.+ .+|+.||||++... ....+.+.+|+.++++++||||+++++++...+ ..++|||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~lv~e 97 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD-ELWVVME 97 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-EEEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECC-EEEEEEE
Confidence 45899999999999999999986 46899999998643 334577899999999999999999999998764 4599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 993 (1133)
|+++|+|.+++... .+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 98 ~~~~~~L~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 169 (297)
T 3fxz_A 98 YLAGGSLTDVVTET------CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE-- 169 (297)
T ss_dssp CCTTCBHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST--
T ss_pred CCCCCCHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCc--
Confidence 99999999999763 3789999999999999999999999999999999999999999999999998754322
Q ss_pred CCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCC
Q 001171 994 EASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 994 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
........||+.|+|||++.+..++.++||||+||++|||++|+.||...........+..... .....+.
T Consensus 170 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~----~~~~~~~---- 240 (297)
T 3fxz_A 170 -QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGT----PELQNPE---- 240 (297)
T ss_dssp -TCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCS----CCCSCGG----
T ss_pred -ccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC----CCCCCcc----
Confidence 1233456799999999999999999999999999999999999999976655444333322211 0100000
Q ss_pred CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1074 DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1074 ~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... ...+++.+||+.||++||++.|++++
T Consensus 241 -----~~~~--~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 241 -----KLSA--IFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp -----GSCH--HHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -----ccCH--HHHHHHHHHccCChhHCcCHHHHhhC
Confidence 0001 12278899999999999999999874
No 59
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=7.6e-40 Score=378.01 Aligned_cols=262 Identities=24% Similarity=0.424 Sum_probs=198.6
Q ss_pred hcCCCcccccccccceeEEEEEEC----CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
..+|++.++||+|+||.||+|+++ ++..||||++..... ..+.+.+|++++++++||||+++++++..... .+
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~ 122 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKP-VM 122 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS-CE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCc-eE
Confidence 357999999999999999999775 578899999975432 24578999999999999999999999987644 49
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.++++... ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++...
T Consensus 123 lv~e~~~~~sL~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 198 (373)
T 2qol_A 123 IVTEYMENGSLDSFLRKHD----AQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLE 198 (373)
T ss_dssp EEEECCTTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEEeCCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence 9999999999999997643 348999999999999999999999999999999999999999999999999997654
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
.............+++.|+|||++.+..++.++|||||||++|||++ |+.||......+....+........ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~-----~~ 273 (373)
T 2qol_A 199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-----PM 273 (373)
T ss_dssp ---------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCC-----CT
T ss_pred cCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC-----Cc
Confidence 33222222233346778999999998899999999999999999998 9999987766655544433211100 00
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
... ....+++.+||+.||++||++.||++.|+.+...+.
T Consensus 274 ------~~~------~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~~ 312 (373)
T 2qol_A 274 ------DCP------AALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPG 312 (373)
T ss_dssp ------TCB------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCGG
T ss_pred ------ccc------HHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCcc
Confidence 000 112378899999999999999999999998765543
No 60
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.5e-39 Score=384.28 Aligned_cols=262 Identities=22% Similarity=0.414 Sum_probs=215.6
Q ss_pred HhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
..++|++.+.||+|+||.||+|.++++..||||++.......+.+.+|++++++++||||+++++++.. +..++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~--~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK--EPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEECS--SSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEeC--CccEEEEee
Confidence 356789999999999999999999889999999998777778899999999999999999999999874 345899999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAE 994 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 994 (1133)
+++|+|.++++.... ..+++..+..++.||+.||+|||+++|+||||||+|||++.++.+||+|||+++..... .
T Consensus 264 ~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~--~ 338 (454)
T 1qcf_A 264 MAKGSLLDFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDN--E 338 (454)
T ss_dssp CTTCBHHHHHHSHHH---HTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH--H
T ss_pred cCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC--c
Confidence 999999999985432 23788899999999999999999999999999999999999999999999999764321 1
Q ss_pred CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCC
Q 001171 995 ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 995 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
........+++.|+|||++....++.++|||||||++|||++ |+.||......+....+....+... ...
T Consensus 339 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~-----~~~---- 409 (454)
T 1qcf_A 339 YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPR-----PEN---- 409 (454)
T ss_dssp HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCC-----CTT----
T ss_pred eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC-----CCC----
Confidence 112233456789999999988889999999999999999999 9999987776666555544321100 000
Q ss_pred CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCC
Q 001171 1074 DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDM 1120 (1133)
Q Consensus 1074 ~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~ 1120 (1133)
.. . ...+++.+||+.||++||++.+|++.|+.+......
T Consensus 410 --~~----~--~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~~ 448 (454)
T 1qcf_A 410 --CP----E--ELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATES 448 (454)
T ss_dssp --SC----H--HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSCC
T ss_pred --CC----H--HHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcccc
Confidence 00 1 123788999999999999999999999998765443
No 61
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=5.1e-40 Score=372.50 Aligned_cols=266 Identities=21% Similarity=0.292 Sum_probs=204.9
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC---cEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPD---VRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~---~~~lV~ 912 (1133)
.++|++.++||+|+||.||+|++. ++.||||++.........+.+|+.++++++||||+++++++..... ..++||
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~ 101 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLIT 101 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEE
Confidence 468999999999999999999886 8999999997655555667789999999999999999999976432 358999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC----------CceecccCccceeeCCCCceEEecc
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL----------DMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~----------~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
||+++|+|.++++.. .+++..+..++.||++||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 102 e~~~~g~L~~~l~~~------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 102 AFHEKGSLSDFLKAN------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp ECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred ecCCCCCHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 999999999999763 388999999999999999999999 9999999999999999999999999
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCccccCCC-----CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHH-------
Q 001171 983 GLDRLAIATPAEASSSTTPIGSLGYVSPEAASTG-----QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIV------- 1050 (1133)
Q Consensus 983 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~------- 1050 (1133)
|+++....... ........||+.|+|||++.+. .++.++|||||||++|||++|+.||.........
T Consensus 176 g~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~ 254 (322)
T 3soc_A 176 GLALKFEAGKS-AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG 254 (322)
T ss_dssp TTCEEECTTSC-CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHC
T ss_pred CcccccccccC-ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhc
Confidence 99976543222 2223446799999999999763 4566889999999999999999999653322111
Q ss_pred -----HHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1051 -----KWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1051 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
..+......... .+..... ...........+++.+||+.||++|||+.|+++.|++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~ 318 (322)
T 3soc_A 255 QHPSLEDMQEVVVHKKK----RPVLRDY---WQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR 318 (322)
T ss_dssp SSCCHHHHHHHHTTSCC----CCCCCGG---GGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCchhhhhhhhhcccC----CCCcccc---ccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 111111111111 1111100 0111112223489999999999999999999999998654
No 62
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=5.9e-39 Score=367.73 Aligned_cols=250 Identities=18% Similarity=0.286 Sum_probs=204.2
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-------CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-------DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||+|++..... ..+.+.+|++++++++||||+++++++... ..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~-~~ 89 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENR-TD 89 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeC-CE
Confidence 467999999999999999999876 589999999965432 246799999999999999999999999876 45
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC----ceEEeccC
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF----EAHLSEFG 983 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~----~~kl~Dfg 983 (1133)
.++||||+++|+|.+++... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++ .+||+|||
T Consensus 90 ~~lv~e~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG 164 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQK-----ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (361)
T ss_dssp EEEEEECCCSCBHHHHHTTC-----SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred EEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence 59999999999999999753 3489999999999999999999999999999999999998876 79999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc
Q 001171 984 LDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 984 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~ 1063 (1133)
+++..... .......||+.|+|||++.+..++.++||||+||++|+|++|..||......+....+.... ..+.
T Consensus 165 ~a~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~--~~~~ 238 (361)
T 2yab_A 165 LAHEIEDG----VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVS--YDFD 238 (361)
T ss_dssp SCEECCTT----CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTC--CCCC
T ss_pred CceEcCCC----CccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 99754321 22345679999999999998899999999999999999999999998776665554443211 0000
Q ss_pred ccccCCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1064 ELLEPGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
. ..+.... ...+++.+|+..||++||++.|++++
T Consensus 239 ~-------------~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 239 E-------------EFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp H-------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred c-------------hhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0 0011111 12378999999999999999999853
No 63
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=9e-39 Score=362.84 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=203.9
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|++.++||+|+||.||+|+.+ +|+.||+|++.+. ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~-~~~lv 83 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD-RLCFV 83 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS-EEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCC-EEEEE
Confidence 57999999999999999999875 6899999999643 234567889999999999999999999998764 55999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||+++.++++||+|||+++.....
T Consensus 84 ~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-----VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp EECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred EeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 99999999999998643 3889999999999999999999999999999999999999999999999998743221
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||...+.......+... ...++.
T Consensus 159 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~p~------- 226 (337)
T 1o6l_A 159 ---GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILME--EIRFPR------- 226 (337)
T ss_dssp ---TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCT-------
T ss_pred ---CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCCCCC-------
Confidence 12334567999999999999999999999999999999999999999876665555444331 111111
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCC-----CHHHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-----SMADIVFM 1110 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-----s~~evl~~ 1110 (1133)
... ....+++.+||+.||++|| +++|++++
T Consensus 227 ----~~s-----~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 227 ----TLS-----PEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp ----TSC-----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred ----CCC-----HHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 100 1123788999999999999 89999865
No 64
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.5e-39 Score=366.01 Aligned_cols=252 Identities=16% Similarity=0.271 Sum_probs=206.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
.++|++.+.||+|+||.||+|.+. +++.||+|.+.........+.+|++++++++||||+++++++.+.. ..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~-~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESME-ELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT-EEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC-EEEEEEEe
Confidence 468999999999999999999875 5899999999766555677899999999999999999999998764 55999999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC--CCceEEeccCcccccccCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA--DFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~ 992 (1133)
+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++. ++.+||+|||+++.....
T Consensus 83 ~~g~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~- 157 (321)
T 1tki_A 83 ISGLDIFERINTSA----FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG- 157 (321)
T ss_dssp CCCCBHHHHHTSSS----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT-
T ss_pred CCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC-
Confidence 99999999997532 34889999999999999999999999999999999999987 789999999999765321
Q ss_pred CCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCC
Q 001171 993 AEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLE 1072 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1133)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||......+....+...... +.
T Consensus 158 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~--~~--------- 223 (321)
T 1tki_A 158 ---DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYT--FD--------- 223 (321)
T ss_dssp ---CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCC--CC---------
T ss_pred ---CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCC--CC---------
Confidence 1223456899999999998888899999999999999999999999877666655544432110 00
Q ss_pred CCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1073 LDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1073 ~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
...+..+. ...+++.+|+..||++|||+.|++++=
T Consensus 224 ----~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp 259 (321)
T 1tki_A 224 ----EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHP 259 (321)
T ss_dssp ----HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred ----hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcCh
Confidence 00111111 123789999999999999999999753
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.4e-38 Score=373.38 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=86.3
Q ss_pred cEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCC
Q 001171 558 QYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQN 637 (1133)
Q Consensus 558 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 637 (1133)
+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|+|++|
T Consensus 267 ~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N 328 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNT 328 (457)
T ss_dssp SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTC
T ss_pred CEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCC
Confidence 344455555444443 34556666666666665555553 2344555544444 56777778888
Q ss_pred cccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCcccccccccccccCCc
Q 001171 638 KLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIPK 717 (1133)
Q Consensus 638 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 717 (1133)
++++. + ++.+++|+.|++++|++++ ++.|..|++++|+++|. ..+..|+.+++++|+++|.+|.
T Consensus 329 ~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 329 ELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred ccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 77763 3 7778888888888888875 25677788888888875 3566788888999999998887
Q ss_pred cccCC
Q 001171 718 MLSSR 722 (1133)
Q Consensus 718 ~~~~~ 722 (1133)
.+...
T Consensus 393 ~~~~~ 397 (457)
T 3bz5_A 393 DLLDQ 397 (457)
T ss_dssp TCBCT
T ss_pred hHhcc
Confidence 65443
No 66
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=5.2e-39 Score=357.44 Aligned_cols=257 Identities=20% Similarity=0.365 Sum_probs=209.8
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|+++++..||+|++.......+.+.+|++++++++||||+++++++.... ..++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR-PIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS-SEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCC-CeEEEEecc
Confidence 4579999999999999999999998999999999887777889999999999999999999999998764 459999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
++++|.+++.... ..+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++..... ..
T Consensus 102 ~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~--~~ 175 (283)
T 3gen_A 102 ANGCLLNYLREMR----HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD--EY 175 (283)
T ss_dssp TTCBHHHHHHCGG----GCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH--HH
T ss_pred CCCcHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccccc--cc
Confidence 9999999997643 23899999999999999999999999999999999999999999999999998754321 11
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
.......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||......+....+.+.... ..+..
T Consensus 176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~------~~~~~---- 245 (283)
T 3gen_A 176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL------YRPHL---- 245 (283)
T ss_dssp HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCC------CCCTT----
T ss_pred ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCC------CCCCc----
Confidence 22334457788999999988889999999999999999998 99999876666555444332110 00000
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
... ...+++.+||+.||++||++.|++++|+++..
T Consensus 246 -~~~------~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 246 -ASE------KVYTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp -CCH------HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CCH------HHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 011 12378899999999999999999999987643
No 67
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=375.34 Aligned_cols=273 Identities=22% Similarity=0.341 Sum_probs=216.5
Q ss_pred hcCCCcccccccccceeEEEEEEC------CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ------DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
.++|++.++||+|+||.||+|.+. +++.||||++..... ....+.+|+.++++++||||+++++++......
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 467999999999999999999853 467899999965322 245688999999999999999999999876444
Q ss_pred EEEEEeccCCCCHHHHHHhhccC--CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC---ceEEecc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQ--DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF---EAHLSEF 982 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~Df 982 (1133)
++||||+++|+|.+++...+.. ....+++..++.++.||++||+|||++||+||||||+|||++.++ .+||+||
T Consensus 150 -~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DF 228 (367)
T 3l9p_A 150 -FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDF 228 (367)
T ss_dssp -EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCC
T ss_pred -EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCC
Confidence 9999999999999999876532 223588999999999999999999999999999999999999655 4999999
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcc
Q 001171 983 GLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQ 1061 (1133)
Q Consensus 983 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~ 1061 (1133)
|+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |..||......+....+......
T Consensus 229 G~a~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~-- 305 (367)
T 3l9p_A 229 GMARDIYRAGY-YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRM-- 305 (367)
T ss_dssp HHHHHHHHHSS-CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCC--
T ss_pred ccccccccccc-cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--
Confidence 99975432211 122334568899999999988899999999999999999998 99999877766655544332110
Q ss_pred ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCCCCCCC
Q 001171 1062 ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPSSADPT 1127 (1133)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~~~~~~ 1127 (1133)
.. .. .... ...+++.+||+.||++||++.||+++|+.+...++......|.
T Consensus 306 --~~-~~------~~~~------~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~~~~~~~~p~ 356 (367)
T 3l9p_A 306 --DP-PK------NCPG------PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPI 356 (367)
T ss_dssp --CC-CT------TCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHHHHTCCCCC
T ss_pred --CC-Cc------cCCH------HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhChhhccCCCcc
Confidence 00 00 0011 1237889999999999999999999999998877665554444
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.4e-38 Score=369.63 Aligned_cols=350 Identities=21% Similarity=0.197 Sum_probs=253.6
Q ss_pred cccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCc
Q 001171 287 GNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLE 366 (1133)
Q Consensus 287 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 366 (1133)
+++++|+.|++++|.+++. +.+..+..|++|+|++|+|+++ | +..+++|++|+|++|+|++. + ++++++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hHcCCCCEEEccCCCcccC---hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 6788888888888888874 2456677888888888888886 3 77788888888888888764 3 77888888
Q ss_pred EEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeeccccc
Q 001171 367 VLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSEND 446 (1133)
Q Consensus 367 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 446 (1133)
+|++++|++++. | +..+++|++|++++|++++. + ++.+++|++|++++|...+.+ .+..+++|++|++++|+
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 888888888764 3 77788888888888888764 2 677888888888888554444 46777888888888888
Q ss_pred ccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChh
Q 001171 447 IRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIE 526 (1133)
Q Consensus 447 i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 526 (1133)
+++. | +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|++++..+..
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 8763 3 67778888888888888764 37777888888888888876 44 777788888888888887655444
Q ss_pred ccCCC-------CCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccc
Q 001171 527 LFGLP-------SLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAEL 599 (1133)
Q Consensus 527 l~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 599 (1133)
+.+++ +|+.|++++|.+.+.+| ++.+++|+.|++++|.+.+.+|. ..++|+.|++++|
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------- 317 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------- 317 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc----------
Confidence 44443 44555566665555544 45677888888888877666553 3345555555444
Q ss_pred cCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccc
Q 001171 600 GACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTT 679 (1133)
Q Consensus 600 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 679 (1133)
++|++|++++|++++ ++ ++.+++|+.|++++|+|++ ++.|..|++++|.+.|. .++..|+.
T Consensus 318 ---~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~ 378 (457)
T 3bz5_A 318 ---PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK 378 (457)
T ss_dssp ---TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred ---ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence 567788888888876 33 7777888888888888774 24566667777877765 35567777
Q ss_pred cccccccccccCCcccc
Q 001171 680 LNLSTNRLSGAIPADLA 696 (1133)
Q Consensus 680 L~Ls~N~l~~~~p~~l~ 696 (1133)
+++++|+++|.+|..+.
T Consensus 379 l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp BCCBTTBEEEECCTTCB
T ss_pred cccccCcEEEEcChhHh
Confidence 88888888888877643
No 69
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=362.04 Aligned_cols=260 Identities=23% Similarity=0.382 Sum_probs=203.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC-cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT-IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
.++|.+.++||+|+||+||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++... ...++|||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e 87 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD-KRLNFITE 87 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecC-CeeEEEEE
Confidence 457899999999999999999875 58999999885432 2356789999999999999999999999876 44589999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 993 (1133)
|+++|+|.++++... ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++.......
T Consensus 88 ~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 163 (310)
T 3s95_A 88 YIKGGTLRGIIKSMD----SQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163 (310)
T ss_dssp CCTTCBHHHHHHHCC----TTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred ecCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence 999999999998743 3489999999999999999999999999999999999999999999999999976533221
Q ss_pred CC-----------CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhH--HHHHHHHhhhc
Q 001171 994 EA-----------SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDI--VKWVKKQLQRG 1060 (1133)
Q Consensus 994 ~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~--~~~~~~~~~~~ 1060 (1133)
.. .......||+.|+|||++.+..++.++|||||||++|||++|..||........ ..........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~- 242 (310)
T 3s95_A 164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR- 242 (310)
T ss_dssp ----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH-
T ss_pred cccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc-
Confidence 11 111245799999999999999999999999999999999999999864322110 0000111000
Q ss_pred cccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1061 QISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
..+..+.+ ...+++.+||+.||++||++.|+++.|+.+...
T Consensus 243 ~~~~~~~~----------------~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~ 283 (310)
T 3s95_A 243 YCPPNCPP----------------SFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH 283 (310)
T ss_dssp TCCTTCCT----------------THHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCH----------------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 00111111 122688899999999999999999999987654
No 70
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.4e-39 Score=373.48 Aligned_cols=270 Identities=21% Similarity=0.315 Sum_probs=211.3
Q ss_pred HHHHHHHhcCCCcccccccccceeEEEEEE------CCceEEEEEEcccCCcC--HHHHHHHHHHHhhc-cCCCeeeEEE
Q 001171 829 YVETLEATRQFDEENVLSRGRYGLIFKASY------QDGMVLSIRRLRDGTID--ENTFRKEAEALGKV-KHRNLTVLRG 899 (1133)
Q Consensus 829 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l-~hpniv~l~~ 899 (1133)
...+....++|++.+.||+|+||.||+|++ .+++.||||++...... .+.+.+|+++++++ +||||+++++
T Consensus 14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~ 93 (359)
T 3vhe_A 14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 93 (359)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeee
Confidence 334445678999999999999999999974 24689999999754332 35689999999999 7999999999
Q ss_pred EEeCCCCcEEEEEeccCCCCHHHHHHhhccCC------------------------------------------------
Q 001171 900 YYAGPPDVRLLVYDYMPNGNLATLLQEASHQD------------------------------------------------ 931 (1133)
Q Consensus 900 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~------------------------------------------------ 931 (1133)
++.......++||||+++|+|.++++......
T Consensus 94 ~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (359)
T 3vhe_A 94 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL 173 (359)
T ss_dssp EECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------------
T ss_pred eeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccccc
Confidence 99887666699999999999999998753210
Q ss_pred -------------CCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCCCCC
Q 001171 932 -------------GHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEASSS 998 (1133)
Q Consensus 932 -------------~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~ 998 (1133)
...+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++....... ....
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~-~~~~ 252 (359)
T 3vhe_A 174 SDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD-YVRK 252 (359)
T ss_dssp ----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT-CEEC
T ss_pred chhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc-chhc
Confidence 12288899999999999999999999999999999999999999999999999975432221 2233
Q ss_pred CCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCCCCC
Q 001171 999 TTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPES 1077 (1133)
Q Consensus 999 ~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1133)
....||+.|+|||++.+..++.++|||||||++|||++ |+.||......+..............+.. ..
T Consensus 253 ~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 322 (359)
T 3vhe_A 253 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDY----------TT 322 (359)
T ss_dssp --CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTT----------CC
T ss_pred cccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCC----------CC
Confidence 44568899999999988899999999999999999998 99999765544333222222111111110 01
Q ss_pred hhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1078 SEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1078 ~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
. ...+++.+||+.||++||++.|++++|+.+.
T Consensus 323 ~------~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 323 P------EMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp H------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 1 1237888999999999999999999998764
No 71
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.3e-38 Score=352.64 Aligned_cols=268 Identities=20% Similarity=0.307 Sum_probs=206.8
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC----HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID----ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|++. +++.||+|++...... .+.+.+|++++++++||||+++++++... +..++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-~~~~l 88 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEED-DCYYL 88 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECS-SEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeC-CeEEE
Confidence 357999999999999999999875 6899999998543322 35788999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.+++...+ .+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++....
T Consensus 89 v~e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 163 (294)
T 4eqm_A 89 VMEYIEGPTLSEYIESHG-----PLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE 163 (294)
T ss_dssp EEECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--
T ss_pred EEeCCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccc
Confidence 999999999999998753 388999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.. ........||+.|+|||++.+..++.++||||+||++|||++|+.||........... .... ........ .
T Consensus 164 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~---~~~~-~~~~~~~~-~ 236 (294)
T 4eqm_A 164 TS--LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIK---HIQD-SVPNVTTD-V 236 (294)
T ss_dssp -------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHH---HHSS-CCCCHHHH-S
T ss_pred cc--ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHH---Hhhc-cCCCcchh-c
Confidence 21 1223345799999999999998999999999999999999999999976554433222 1111 11111000 0
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCC-CHHHHHHHHhcCcCCCCCCCCC
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-SMADIVFMLEGCRVGPDMPSSA 1124 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-s~~evl~~Le~~~~~~~~~~~~ 1124 (1133)
. ... .. ...+++.+|++.||++|| +++++.+.|+.+..........
T Consensus 237 ~---~~~---~~--~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~~~~~~ 283 (294)
T 4eqm_A 237 R---KDI---PQ--SLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENRANEDV 283 (294)
T ss_dssp C---TTS---CH--HHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSSTTCCC
T ss_pred c---cCC---CH--HHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhccCCcch
Confidence 0 000 01 122788999999999998 9999999999988766555443
No 72
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1e-38 Score=378.50 Aligned_cols=263 Identities=24% Similarity=0.421 Sum_probs=210.9
Q ss_pred HhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
..++|++.+.||+|+||.||+|.++.+..||||++.......+.+.+|++++++++||||+++++++.. +..++||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC--CceEEEehh
Confidence 346789999999999999999999888889999998776677889999999999999999999999876 345899999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAE 994 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 994 (1133)
+++|+|.+++..... ..+++..+..++.||+.||+|||+++|+||||||+||+++.++.+||+|||+++......
T Consensus 260 ~~~gsL~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-- 334 (452)
T 1fmk_A 260 MSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-- 334 (452)
T ss_dssp CTTCBHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred hcCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc--
Confidence 999999999976432 238899999999999999999999999999999999999999999999999997543221
Q ss_pred CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCC
Q 001171 995 ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 995 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
........++..|+|||++.+..++.++|||||||++|||++ |+.||......+....+.+..+.. ..
T Consensus 335 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~-----~~------ 403 (452)
T 1fmk_A 335 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP-----CP------ 403 (452)
T ss_dssp --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC-----CC------
T ss_pred eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC-----CC------
Confidence 112233457789999999988899999999999999999999 999998776666555443321100 00
Q ss_pred CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCC
Q 001171 1074 DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMP 1121 (1133)
Q Consensus 1074 ~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~ 1121 (1133)
.. ..+ ...+++.+||+.||++||+++++++.|+.+......+
T Consensus 404 -~~---~~~--~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~ 445 (452)
T 1fmk_A 404 -PE---CPE--SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 445 (452)
T ss_dssp -TT---SCH--HHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCC
T ss_pred -CC---CCH--HHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCcc
Confidence 00 001 1227889999999999999999999999987765544
No 73
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=3.4e-38 Score=357.05 Aligned_cols=261 Identities=18% Similarity=0.277 Sum_probs=208.3
Q ss_pred CcccHHHHHHHhcC----------CCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCC
Q 001171 825 NKITYVETLEATRQ----------FDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHR 892 (1133)
Q Consensus 825 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp 892 (1133)
..+++.+...+++. |+..+.||+|+||.||+|+.. +|+.||||++..... ..+.+.+|++++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34566666666553 777889999999999999886 699999999865433 356789999999999999
Q ss_pred CeeeEEEEEeCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC
Q 001171 893 NLTVLRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD 972 (1133)
Q Consensus 893 niv~l~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~ 972 (1133)
||+++++++.... ..++||||+++|+|.+++.. ..+++..+..++.||++||+|||+.||+||||||+||+++
T Consensus 103 niv~~~~~~~~~~-~~~lv~e~~~~~~L~~~l~~------~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~ 175 (321)
T 2c30_A 103 NVVEMYKSYLVGE-ELWVLMEFLQGGALTDIVSQ------VRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLT 175 (321)
T ss_dssp TBCCEEEEEEETT-EEEEEECCCCSCBHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC
T ss_pred CcceEEEEEEECC-EEEEEEecCCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC
Confidence 9999999998764 45999999999999999864 2389999999999999999999999999999999999999
Q ss_pred CCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHH
Q 001171 973 ADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKW 1052 (1133)
Q Consensus 973 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~ 1052 (1133)
.++.+||+|||+++..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||...........
T Consensus 176 ~~~~~kl~Dfg~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~ 252 (321)
T 2c30_A 176 LDGRVKLSDFGFCAQISKD---VPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKR 252 (321)
T ss_dssp TTCCEEECCCTTCEECCSS---SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH
T ss_pred CCCcEEEeeeeeeeecccC---ccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 9999999999998754322 1223456799999999999998999999999999999999999999976665544443
Q ss_pred HHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1053 VKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+... ........ ..... ...+++.+||+.||++||++.|++++
T Consensus 253 ~~~~----~~~~~~~~---------~~~~~--~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 253 LRDS----PPPKLKNS---------HKVSP--VLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp HHHS----SCCCCTTG---------GGSCH--HHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HhcC----CCCCcCcc---------ccCCH--HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 3221 11110000 00001 12378889999999999999999975
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-37 Score=369.30 Aligned_cols=344 Identities=26% Similarity=0.367 Sum_probs=175.4
Q ss_pred ccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEc
Q 001171 315 SVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDL 394 (1133)
Q Consensus 315 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (1133)
..++.|++++|.++.+ | .+..+++|++|||++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|+|
T Consensus 46 ~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 3455555555555554 2 25666666666666666664433 6666666666666666665433 666666666666
Q ss_pred cCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCC
Q 001171 395 EGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGK 474 (1133)
Q Consensus 395 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 474 (1133)
++|.+++..+ +..+++|++|++++|.+++. + .+..+++|++|+++ |.+.+. ..+.++++|++|++++|.+++.
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC
Confidence 6666654332 55666666666666665542 2 35556666666664 333322 1255555666666666655532
Q ss_pred CCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCC
Q 001171 475 VPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSL 554 (1133)
Q Consensus 475 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 554 (1133)
..+..+++|++|++++|.+++..| ++.+++|+.|++++|++++. ..+..+++|++|++++|.+++..+
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~------ 260 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP------ 260 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG------
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh------
Confidence 124445555555555555544333 44445555555555555421 234444444444444444443322
Q ss_pred ccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeec
Q 001171 555 VGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDL 634 (1133)
Q Consensus 555 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 634 (1133)
+..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|+|
T Consensus 261 --------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 261 --------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp --------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred --------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 3444444444444444443222 4444444445554444443222 444445555555
Q ss_pred CCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCcccccccccccc
Q 001171 635 GQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEG 713 (1133)
Q Consensus 635 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 713 (1133)
++|++++..| +..+++|+.|++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 5555543333 44455555555555555432 234455555555555555554443 4455555555555555554
No 75
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=358.17 Aligned_cols=250 Identities=19% Similarity=0.314 Sum_probs=203.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-------CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-------DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||+|++..... ..+.+.+|++++++++||||+++++++... ..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~ 88 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK-TD 88 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-CE
Confidence 457999999999999999999875 589999999864322 357899999999999999999999999876 45
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC----ceEEeccC
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF----EAHLSEFG 983 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~----~~kl~Dfg 983 (1133)
.++||||+++|+|.+++... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++ .+||+|||
T Consensus 89 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 89 VILILELVAGGELFDFLAEK-----ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEEEECCCSCBHHHHHTTS-----SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEEcCCCCCHHHHHHhc-----CCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 59999999999999999753 3488999999999999999999999999999999999998887 79999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc
Q 001171 984 LDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 984 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~ 1063 (1133)
+++..... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||......+....+.... ..+.
T Consensus 164 ~a~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~--~~~~ 237 (326)
T 2y0a_A 164 LAHKIDFG----NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVN--YEFE 237 (326)
T ss_dssp TCEECCTT----SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTC--CCCC
T ss_pred CCeECCCC----CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcC--CCcC
Confidence 99754321 22334579999999999998899999999999999999999999998766655544443321 0000
Q ss_pred ccccCCcCCCCCCChhHHHH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1064 ELLEPGLLELDPESSEWEEF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. .+... ....+++.+||+.||++|||+.|++++
T Consensus 238 ~~-------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 238 DE-------------YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp HH-------------HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred cc-------------ccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00 00001 112378999999999999999999974
No 76
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=6.8e-38 Score=353.01 Aligned_cols=264 Identities=23% Similarity=0.350 Sum_probs=203.9
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|++.++||+|+||+||+|++.+|+.||+|++...... .+.+.+|++++++++||||+++++++... ...++||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~ 98 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSE-RCLTLVF 98 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCS-SCEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccC-CEEEEEE
Confidence 4689999999999999999999988999999999654332 35788999999999999999999999876 4559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||++ |+|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++.....
T Consensus 99 e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~- 172 (311)
T 3niz_A 99 EFME-KDLKKVLDENK----TGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP- 172 (311)
T ss_dssp ECCS-EEHHHHHHTCT----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC-
T ss_pred cCCC-CCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCC-
Confidence 9997 58888887533 34889999999999999999999999999999999999999999999999999754221
Q ss_pred CCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc----
Q 001171 993 AEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE---- 1067 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1067 (1133)
........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+....+..............
T Consensus 173 --~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 250 (311)
T 3niz_A 173 --VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQEL 250 (311)
T ss_dssp --CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTS
T ss_pred --cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhcc
Confidence 122344578999999999876 5689999999999999999999999987777766666655443322111100
Q ss_pred -----CCcCCCCCCChhHHHH-----HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1068 -----PGLLELDPESSEWEEF-----LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1068 -----~~~~~~~~~~~~~~~~-----~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..... .....+... ....+++.+|++.||++|||++|++++
T Consensus 251 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 251 PLWKQRTFQV--FEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp HHHHSCCCCC--CCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred chhhhccccc--ccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 00000 001111111 122379999999999999999999874
No 77
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=1.5e-38 Score=381.20 Aligned_cols=259 Identities=21% Similarity=0.394 Sum_probs=213.5
Q ss_pred hcCCCcccccccccceeEEEEEECC-ceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQD-GMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
..+|++.++||+|+||.||+|.++. +..||||++.......+.|.+|++++++++||||+++++++..... .++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~-~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP-FYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS-CEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCc-EEEEEEc
Confidence 4578999999999999999998875 8999999998777678899999999999999999999999987644 4999999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAE 994 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 994 (1133)
+++|+|.++++.... ..+++..+..++.||++||+|||+++|+||||||+|||++.++.+||+|||+++......
T Consensus 298 ~~~g~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-- 372 (495)
T 1opk_A 298 MTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-- 372 (495)
T ss_dssp CTTCBHHHHHHHSCT---TTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC--
T ss_pred cCCCCHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCc--
Confidence 999999999986432 348899999999999999999999999999999999999999999999999997643221
Q ss_pred CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCC
Q 001171 995 ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 995 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
........+++.|+|||++.+..++.++|||||||++|||++ |+.||...+..+....+.+..+. . ....
T Consensus 373 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~-~----~~~~---- 443 (495)
T 1opk_A 373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM-E----RPEG---- 443 (495)
T ss_dssp EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC-C----CCTT----
T ss_pred eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-C----CCCC----
Confidence 122233456789999999988889999999999999999999 99999877666655544332110 0 0000
Q ss_pred CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1074 DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1074 ~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
.. ....+++.+||+.||++||++.||++.|+.+...
T Consensus 444 --~~------~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~ 479 (495)
T 1opk_A 444 --CP------EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 479 (495)
T ss_dssp --CC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred --CC------HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence 00 1123788999999999999999999999987654
No 78
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=8.1e-39 Score=365.69 Aligned_cols=248 Identities=20% Similarity=0.313 Sum_probs=199.1
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~ 908 (1133)
..++|++.++||+|+||.||+|+++ +|+.||||++.+. ....+.+.+|.++++.+ +||||+++++++.... ..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~-~~ 99 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD-RL 99 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS-EE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC-EE
Confidence 4568999999999999999999875 5899999998643 22346678899999998 7999999999998764 55
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+|||++.++++||+|||+++..
T Consensus 100 ~lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~ 174 (353)
T 3txo_A 100 FFVMEFVNGGDLMFHIQKSR-----RFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEG 174 (353)
T ss_dssp EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred EEEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeec
Confidence 99999999999999998753 3889999999999999999999999999999999999999999999999998743
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
.. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||...+..++...+... ...++..
T Consensus 175 ~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~--~~~~p~~--- 246 (353)
T 3txo_A 175 IC---NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILND--EVVYPTW--- 246 (353)
T ss_dssp CC------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTT---
T ss_pred cc---CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcC--CCCCCCC---
Confidence 21 122334567999999999998888999999999999999999999999877776665555432 1111100
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCH------HHHHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSM------ADIVF 1109 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~------~evl~ 1109 (1133)
.. ....+++.+|++.||++||++ .|+++
T Consensus 247 -------~~------~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 247 -------LH------EDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp -------SC------HHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred -------CC------HHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 00 112378999999999999998 77774
No 79
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=2.5e-38 Score=363.80 Aligned_cols=252 Identities=17% Similarity=0.287 Sum_probs=203.8
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
..++|++.+.||+|+||.||+|.++ +|+.||+|++...... .+.+.+|++++++++||||+++++++.+. ...++
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-~~~~l 105 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE-SFHYL 105 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-CEEEE
Confidence 4568999999999999999999875 5899999999754433 35688999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC---ceEEeccCcccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF---EAHLSEFGLDRL 987 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~a~~ 987 (1133)
||||+++|+|.+++... ..+++..+..++.||+.||+|||++||+||||||+||+++.++ .+||+|||+++.
T Consensus 106 v~e~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~ 180 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVAR-----EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 180 (362)
T ss_dssp EECCCCSCBHHHHHTTC-----SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred EEecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence 99999999999998753 3488999999999999999999999999999999999998654 599999999875
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
.... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||...+.......+...... ...
T Consensus 181 ~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~ 251 (362)
T 2bdw_A 181 VNDS----EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYD-----YPS 251 (362)
T ss_dssp CTTC----CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC-----CCT
T ss_pred ecCC----cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCC-----CCc
Confidence 4321 2233467999999999999989999999999999999999999999877666555554432110 001
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+.+... . ....+++.+||+.||++||++.|++++
T Consensus 252 ~~~~~~-------~--~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 252 PEWDTV-------T--PEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp TGGGGS-------C--HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred ccccCC-------C--HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 111000 0 112378999999999999999999865
No 80
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=4.3e-39 Score=372.97 Aligned_cols=257 Identities=23% Similarity=0.341 Sum_probs=206.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC--HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID--ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|++.+.||+|+||.||+|.++ +++.||||++...... .+.+.+|++++++++||||+++++++..... .++||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~-~~lv~ 191 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP-IYIVM 191 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS-CEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC-cEEEE
Confidence 457899999999999999999886 6899999998754321 3467899999999999999999999987644 49999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++|+|.++++..+. .+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++......
T Consensus 192 e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~ 267 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTEGA----RLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267 (377)
T ss_dssp ECCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred EcCCCCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence 99999999999986542 38899999999999999999999999999999999999999999999999987532211
Q ss_pred CCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 993 AEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
.........+++.|+|||++.+..++.++|||||||++|||++ |+.||......+....+.+..+ ...+
T Consensus 268 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~-~~~~-------- 337 (377)
T 3cbl_A 268 -YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGR-LPCP-------- 337 (377)
T ss_dssp -EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCC-CCCC--------
T ss_pred -eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC-CCCC--------
Confidence 1111122345678999999988889999999999999999998 9999987766655444432211 0000
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
... .. ...+++.+||+.||++||++.|+++.|+.+.
T Consensus 338 ---~~~---~~--~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 338 ---ELC---PD--AVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp ---TTC---CH--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---CCC---CH--HHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 000 01 1237889999999999999999999998764
No 81
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=371.97 Aligned_cols=253 Identities=17% Similarity=0.250 Sum_probs=204.2
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
..++|++.+.||+|+||+||+|.+. +|+.||+|++...... .+.+.+|++++++++||||+++++++.+. ...++
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~-~~~~l 87 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEE-GHHYL 87 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECS-SEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEEC-CEEEE
Confidence 4568999999999999999999774 6899999998754432 45688999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC---CCCceEEeccCcccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD---ADFEAHLSEFGLDRL 987 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~---~~~~~kl~Dfg~a~~ 987 (1133)
||||+++|+|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++ .++.+||+|||+++.
T Consensus 88 v~E~~~gg~L~~~i~~~~-----~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 88 IFDLVTGGELFEDIVARE-----YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp EECCCBCCBHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EEEeCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 999999999999998643 388999999999999999999999999999999999998 467899999999965
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
.... ........||+.|+|||++.+..++.++||||+||++|+|++|+.||...+..+....+...... ...
T Consensus 163 ~~~~---~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~-----~~~ 234 (444)
T 3soa_A 163 VEGE---QQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYD-----FPS 234 (444)
T ss_dssp CCTT---CCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC-----CCT
T ss_pred ecCC---CceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCC-----CCc
Confidence 4321 12234567999999999999889999999999999999999999999877766666555442111 111
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+.+... .. ...+++.+|++.||++||++.|++++
T Consensus 235 ~~~~~~---s~------~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 235 PEWDTV---TP------EAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp TTTTTS---CH------HHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred cccccC---CH------HHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 111111 11 12378999999999999999999974
No 82
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.3e-38 Score=351.03 Aligned_cols=257 Identities=22% Similarity=0.377 Sum_probs=212.0
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|.+.++..||+|++.......+.+.+|++++++++||||+++++++..... .++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP-ICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS-CEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC-eEEEEeCC
Confidence 35789999999999999999999889999999998777777889999999999999999999999987644 59999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
++++|.+++.... ..+++..+..++.|+++||+|||++||+||||||+||+++.++.+||+|||+++..... ..
T Consensus 86 ~~~~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~--~~ 159 (267)
T 3t9t_A 86 EHGCLSDYLRTQR----GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD--QY 159 (267)
T ss_dssp TTCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH--HH
T ss_pred CCCcHHHHHhhCc----ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccc--cc
Confidence 9999999998643 34789999999999999999999999999999999999999999999999998754221 11
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
.......++..|+|||++.+..++.++||||+|+++|||++ |+.||......+....+..... ......
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~-----~~~~~~----- 229 (267)
T 3t9t_A 160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFR-----LYKPRL----- 229 (267)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCC-----CCCCTT-----
T ss_pred cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCc-----CCCCcc-----
Confidence 22234467789999999988889999999999999999999 8999987666555444333211 000000
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
... ...+++.+||+.||++||++.|++++|+++..
T Consensus 230 -~~~------~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 230 -AST------HVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp -SCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CcH------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 011 12378899999999999999999999988654
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-37 Score=367.89 Aligned_cols=323 Identities=28% Similarity=0.455 Sum_probs=241.2
Q ss_pred cccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEE
Q 001171 314 VSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFD 393 (1133)
Q Consensus 314 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (1133)
+.+|++|+|++|+++++.+ +.++++|++|++++|.+.+..+ ++++++|++|++++|.+++..+ +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence 3445555555555555533 7777778888888887775544 7777888888888887776533 77778888888
Q ss_pred ccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCC
Q 001171 394 LEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGG 473 (1133)
Q Consensus 394 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 473 (1133)
+++|.+++. + .++.+++|+.|+++ |.+.+.. .+.++++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 141 l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 141 LSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 888887753 3 47778888888886 4555433 377888888888888888753 347788888888888888876
Q ss_pred CCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCC
Q 001171 474 KVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSS 553 (1133)
Q Consensus 474 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 553 (1133)
..+ ++.+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..
T Consensus 214 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 214 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 655 67788888888888888753 357788889999999998886544 7888889999999998886544 778
Q ss_pred CccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeee
Q 001171 554 LVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLD 633 (1133)
Q Consensus 554 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 633 (1133)
+++|+.|++++|++++..+ +..+++|++|++++|++++..| ++.+++|++|++++|++++. ..+..+++|+.|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 8888888888888876443 6778888888888888886655 66778888888888888753 3577777888888
Q ss_pred cCCCcccCcCchhhhccCCCcEEEeecCCCCc
Q 001171 634 LGQNKLSGEIPKEISKCSSLVSLTLDMNSLSG 665 (1133)
Q Consensus 634 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 665 (1133)
+++|++++..| +..+++|+.|++++|++++
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888876655 7777788888888887775
No 84
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=8.2e-38 Score=351.48 Aligned_cols=262 Identities=21% Similarity=0.368 Sum_probs=200.0
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|.+.++||+|+||.||+|.++. .+|+|+++..... .+.+.+|++++++++||||+++++++... ..++||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~~--~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~lv~ 110 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD--NLAIVT 110 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--SCEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEECC--EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC--cEEEEE
Confidence 4589999999999999999998754 4788887643332 36788999999999999999999988653 348999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++++|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++......
T Consensus 111 e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~ 186 (307)
T 3lb7_A 111 QWCEGSSLYKHLHVQE----TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp ECCSSCBHHHHHHTSC----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCSSSEEECTTSCEEECCCCSSCC-----
T ss_pred ecCCCCcHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHhCCEeeCCCChhhEEEcCCCCEEEccCCCceeccccc
Confidence 9999999999997532 348999999999999999999999999999999999999999999999999987543211
Q ss_pred CCCCCCCCCCCCCCccCccccC---CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 993 AEASSSTTPIGSLGYVSPEAAS---TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.........||+.|+|||++. +..++.++|||||||++|||++|+.||......+........ ... .+.
T Consensus 187 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~---~~~----~~~ 258 (307)
T 3lb7_A 187 -GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGR---GYA----SPD 258 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHH---TCC----CCC
T ss_pred -ccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhc---CCC----Ccc
Confidence 122234457999999999985 566888999999999999999999999765544433222221 111 111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
......... . ...+++.+||+.||++||++.|++++|+.++...
T Consensus 259 ~~~~~~~~~---~--~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 259 LSKLYKNCP---K--AMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp STTSCSSSC---H--HHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred hhhhhcCCc---H--HHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 111111110 1 1237888999999999999999999999877643
No 85
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=6e-38 Score=355.23 Aligned_cols=276 Identities=18% Similarity=0.229 Sum_probs=206.7
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCC-CcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPP-DVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-~~~~lV 911 (1133)
.++|++.++||+|+||.||+|.+. +|+.||||++.... ...+.+.+|++++++++||||+++++++.... ...++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 357999999999999999999876 48999999986433 23567889999999999999999999987653 356899
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee----CCCCceEEeccCcccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF----DADFEAHLSEFGLDRL 987 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll----~~~~~~kl~Dfg~a~~ 987 (1133)
|||+++|+|.+++...... ..+++..+..++.||+.||+|||+.||+||||||+||++ +.++.+||+|||+++.
T Consensus 88 ~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~ 165 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (319)
T ss_dssp EECCTTCBHHHHHHSGGGT--TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred EeCCCCCCHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence 9999999999999875432 338999999999999999999999999999999999999 8888899999999975
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccC--------CCCCCCCCchhHHHHHHHHHHhCCCCCccCChh----hHHHHHHH
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAAS--------TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE----DIVKWVKK 1055 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~----~~~~~~~~ 1055 (1133)
.... .......||+.|+|||++. +..++.++||||+||++|||++|+.||...... +....+..
T Consensus 166 ~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 241 (319)
T 4euu_A 166 LEDD----EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (319)
T ss_dssp CCTT----CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHH
T ss_pred cCCC----CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhc
Confidence 4322 2223457999999999985 567899999999999999999999999643322 22222222
Q ss_pred HhhhccccccccC---Cc---CCCCCCChhHHHHHHh-HhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1056 QLQRGQISELLEP---GL---LELDPESSEWEEFLLG-VKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1056 ~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~-~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
......+...... .+ ...+....-....... .+++.+||+.||++||+++|++++..+-...
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~ 310 (319)
T 4euu_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (319)
T ss_dssp HCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC-
T ss_pred CCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhc
Confidence 1111111100000 00 0001111111222222 3899999999999999999999998764443
No 86
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=367.50 Aligned_cols=268 Identities=22% Similarity=0.279 Sum_probs=213.5
Q ss_pred HhcCCCcccccccccceeEEEEEEC--------CceEEEEEEcccCCcC--HHHHHHHHHHHhhc-cCCCeeeEEEEEeC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ--------DGMVLSIRRLRDGTID--ENTFRKEAEALGKV-KHRNLTVLRGYYAG 903 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l-~hpniv~l~~~~~~ 903 (1133)
..++|.+.++||+|+||.||+|++. .+..||||++...... .+.+.+|+++++++ +||||+++++++..
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 3468999999999999999999762 3478999999754332 35788999999999 99999999999987
Q ss_pred CCCcEEEEEeccCCCCHHHHHHhhccC-----------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC
Q 001171 904 PPDVRLLVYDYMPNGNLATLLQEASHQ-----------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD 972 (1133)
Q Consensus 904 ~~~~~~lV~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~ 972 (1133)
... .++||||+++|+|.+++...... ....+++..+..++.||+.||+|||+.||+||||||+||+++
T Consensus 147 ~~~-~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~ 225 (382)
T 3tt0_A 147 DGP-LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT 225 (382)
T ss_dssp SSS-CEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC
T ss_pred CCc-eEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEc
Confidence 644 49999999999999999875421 124589999999999999999999999999999999999999
Q ss_pred CCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHH
Q 001171 973 ADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVK 1051 (1133)
Q Consensus 973 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~ 1051 (1133)
.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+...
T Consensus 226 ~~~~~kL~DFG~a~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~ 304 (382)
T 3tt0_A 226 EDNVMKIADFGLARDIHHIDY-YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFK 304 (382)
T ss_dssp TTCCEEECSCSCCCCSSCCCT-TCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHH
T ss_pred CCCcEEEcccCcccccccccc-cccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 999999999999975432211 122334567889999999999999999999999999999999 999998776665554
Q ss_pred HHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCC
Q 001171 1052 WVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMP 1121 (1133)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~ 1121 (1133)
.+...... .. .. .... ...+++.+||+.||++||++.||+++|+.+.......
T Consensus 305 ~~~~~~~~----~~-~~------~~~~------~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~ 357 (382)
T 3tt0_A 305 LLKEGHRM----DK-PS------NCTN------ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 357 (382)
T ss_dssp HHHTTCCC----CC-CS------SCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSC
T ss_pred HHHcCCCC----CC-Cc------cCCH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcC
Confidence 44332111 00 00 0111 1237888999999999999999999999876544433
No 87
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=2e-38 Score=375.83 Aligned_cols=253 Identities=26% Similarity=0.404 Sum_probs=208.4
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|.++ |+.||||+++... ..+.+.+|++++++++||||+++++++.......++||||+
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~ 269 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 269 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEec
Confidence 467899999999999999999886 7899999997654 46789999999999999999999999877665679999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
++|+|.++++..+. ..+++..+..++.||++||+|||+++|+||||||+||+++.++.+||+|||+++....
T Consensus 270 ~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~----- 341 (450)
T 1k9a_A 270 AKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS----- 341 (450)
T ss_dssp TTCBHHHHHHHHCT---TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC------
T ss_pred CCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccc-----
Confidence 99999999987542 3378899999999999999999999999999999999999999999999999874321
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
......+++.|+|||++.+..++.++|||||||++|||++ |+.||......+....+.+..+. .. ...
T Consensus 342 -~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~-~~----p~~----- 410 (450)
T 1k9a_A 342 -TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM-DA----PDG----- 410 (450)
T ss_dssp ------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCC-CC----CTT-----
T ss_pred -cccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-CC----CCc-----
Confidence 1122357889999999999999999999999999999998 99999877666655554332110 00 000
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
... ...+++.+||+.||++||++.|+++.|+.+..
T Consensus 411 -~~~------~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~ 445 (450)
T 1k9a_A 411 -CPP------AVYDVMKNCWHLDAATRPTFLQLREQLEHIRT 445 (450)
T ss_dssp -CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CCH------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 001 12278899999999999999999999988654
No 88
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=1.6e-38 Score=361.79 Aligned_cols=247 Identities=22% Similarity=0.360 Sum_probs=202.9
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~ 908 (1133)
..++|++.++||+|+||.||+|+++ +|+.||+|++.+. ....+.+.+|.++++.+ +||||+++++++.... ..
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~-~~ 93 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE-NL 93 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS-EE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC-EE
Confidence 4578999999999999999999885 5899999999653 22356788899999987 9999999999998764 55
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||+++.++++||+|||+++..
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH-----KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 99999999999999998743 3889999999999999999999999999999999999999999999999998743
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...+..++...+... ...++..+
T Consensus 169 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~p~~~-- 241 (345)
T 1xjd_A 169 MLG---DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMD--NPFYPRWL-- 241 (345)
T ss_dssp CCT---TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTS--
T ss_pred ccC---CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhC--CCCCCccc--
Confidence 221 12334568999999999999999999999999999999999999999877766655554331 11111000
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHH-HHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMA-DIV 1108 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~-evl 1108 (1133)
. ....+++.+|++.||++||++. |++
T Consensus 242 --------s------~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 242 --------E------KEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp --------C------HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred --------C------HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 0 1123789999999999999997 665
No 89
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=9.7e-39 Score=354.45 Aligned_cols=263 Identities=22% Similarity=0.381 Sum_probs=212.2
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|.++++..||+|++.......+.+.+|++++++++||||+++++++... ..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQE--PIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcCC--CcEEEEecC
Confidence 467999999999999999999998888999999987766778999999999999999999999998753 358999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
++++|.+++..... ..+++..+..++.|+++||+|||++||+||||||+||+++.++.+||+|||+++...... .
T Consensus 90 ~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~ 164 (279)
T 1qpc_A 90 ENGSLVDFLKTPSG---IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE--Y 164 (279)
T ss_dssp TTCBHHHHTTSHHH---HTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC--E
T ss_pred CCCCHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc--c
Confidence 99999999975431 238899999999999999999999999999999999999999999999999997553221 1
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
.......++..|+|||++.+..++.++||||+||++|||++ |+.||......+....+.+... ......
T Consensus 165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~-----~~~~~~----- 234 (279)
T 1qpc_A 165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR-----MVRPDN----- 234 (279)
T ss_dssp ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC-----CCCCTT-----
T ss_pred ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccC-----CCCccc-----
Confidence 22234457789999999988888999999999999999999 9999987666555444332211 000000
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCC
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPS 1122 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~ 1122 (1133)
.. ....+++.+|++.||++||++.++++.|+.+......+.
T Consensus 235 -~~------~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 275 (279)
T 1qpc_A 235 -CP------EELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQY 275 (279)
T ss_dssp -CC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC----
T ss_pred -cc------HHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCC
Confidence 00 112378899999999999999999999998876555443
No 90
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1.8e-38 Score=360.52 Aligned_cols=258 Identities=21% Similarity=0.334 Sum_probs=202.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-Cce----EEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGM----VLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~----~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++|++.++||+|+||.||+|++. +++ .||+|.+.... ...+.+.+|++++++++||||+++++++.... .
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~ 91 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--V 91 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS--E
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--e
Confidence 457999999999999999999864 343 46888875432 33578999999999999999999999998753 5
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++|+||+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus 92 ~~v~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~ 167 (327)
T 3poz_A 92 QLITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEEEECCTTCBHHHHHHHST----TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred EEEEEecCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEc
Confidence 89999999999999998743 34899999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
..... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+....+....... . .
T Consensus 168 ~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~-~----~ 241 (327)
T 3poz_A 168 GAEEK-EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLP-Q----P 241 (327)
T ss_dssp TTTCC--------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC-C----C
T ss_pred cCCcc-cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCC-C----C
Confidence 33222 222334457889999999999999999999999999999999 999998776666555443321110 0 0
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
+ ... ....+++.+||+.||++||++.|++++|+.+...
T Consensus 242 ~------~~~------~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 242 P------ICT------IDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp T------TBC------HHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred c------cCC------HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 0 000 1123788999999999999999999999887654
No 91
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=4e-38 Score=362.12 Aligned_cols=253 Identities=18% Similarity=0.297 Sum_probs=192.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
.++|++.+.||+|+||+||+|+.+ +++.||||++.......+.+.+|+.++++++||||+++++++.... ..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPT-HLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSS-EEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCC-EEEEEEEe
Confidence 457999999999999999999886 6899999999876666678999999999999999999999998764 45999999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc--eEEeccCcccccccCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE--AHLSEFGLDRLAIATP 992 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~--~kl~Dfg~a~~~~~~~ 992 (1133)
+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||+++.++. +||+|||+++....
T Consensus 98 ~~~~~L~~~l~~~~-----~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~-- 170 (361)
T 3uc3_A 98 ASGGELYERICNAG-----RFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL-- 170 (361)
T ss_dssp CCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-------
T ss_pred CCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccc--
Confidence 99999999997643 3889999999999999999999999999999999999987765 99999999864321
Q ss_pred CCCCCCCCCCCCCCccCccccCCCCCCCC-CchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 993 AEASSSTTPIGSLGYVSPEAASTGQPTKE-ADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
........||+.|+|||++.+..++.+ +||||+||++|||++|+.||.............+........ ... ..
T Consensus 171 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~-~~ 245 (361)
T 3uc3_A 171 --HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYS--IPD-DI 245 (361)
T ss_dssp ------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCC--CCT-TS
T ss_pred --cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCC--CCC-cC
Confidence 122334579999999999987777655 899999999999999999997654432222222222211110 000 00
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... ....+++.+||+.||++|||+.|++++
T Consensus 246 ---~~s------~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 246 ---RIS------PECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp ---CCC------HHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred ---CCC------HHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 001 112378999999999999999999976
No 92
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=3.8e-38 Score=361.26 Aligned_cols=254 Identities=17% Similarity=0.334 Sum_probs=200.6
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC------CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG------TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~------~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||||++... ....+.+.+|++++++++||||+++++++... ...
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~ 101 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD-GML 101 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-CEE
Confidence 457999999999999999999875 6899999998532 22467899999999999999999999999876 455
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc---eEEeccCcc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE---AHLSEFGLD 985 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg~a 985 (1133)
++||||+++|+|.+++...... ...+++..+..++.||++||+|||++||+||||||+||+++.++. +||+|||++
T Consensus 102 ~lv~e~~~g~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 102 YMVFEFMDGADLCFEIVKRADA-GFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEEEECCSSCBHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEEEeCCCCCCHHHHHHHhccc-CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 9999999999999888764322 234889999999999999999999999999999999999987655 999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 986 RLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 986 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
+..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.... ......+.+ .....
T Consensus 181 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-~~~~~~i~~----~~~~~- 251 (351)
T 3c0i_A 181 IQLGES---GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK-ERLFEGIIK----GKYKM- 251 (351)
T ss_dssp EECCTT---SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH-HHHHHHHHH----TCCCC-
T ss_pred eEecCC---CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH-HHHHHHHHc----CCCCC-
Confidence 754322 122345679999999999999899999999999999999999999997543 222222222 11100
Q ss_pred ccCCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 LEPGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
....+..+. ...+++.+||+.||++||++.|++++
T Consensus 252 ----------~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 252 ----------NPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp ----------CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ----------CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 000111111 12378999999999999999999863
No 93
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=4.4e-38 Score=350.75 Aligned_cols=263 Identities=21% Similarity=0.320 Sum_probs=200.5
Q ss_pred cCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
++|++.+.||+|+||.||+|+..+|+.||+|++.....+ .+.+.+|++++++++||||+++++++.... ..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~lv~e 80 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK-RLVLVFE 80 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS-CEEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCC-eEEEEEE
Confidence 579999999999999999999888999999998654322 367889999999999999999999998764 5599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 993 (1133)
|++ ++|.+++.... ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 81 ~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 153 (288)
T 1ob3_A 81 HLD-QDLKKLLDVCE----GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP-- 153 (288)
T ss_dssp CCS-EEHHHHHHTST----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred ecC-CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc--
Confidence 996 49999887532 34889999999999999999999999999999999999999999999999998754321
Q ss_pred CCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc-------
Q 001171 994 EASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL------- 1065 (1133)
Q Consensus 994 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~------- 1065 (1133)
........||+.|+|||++.+. .++.++||||+||++|||++|+.||......+....+.+..........
T Consensus 154 -~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
T 1ob3_A 154 -VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELP 232 (288)
T ss_dssp ---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred -ccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccc
Confidence 1122345789999999998764 5899999999999999999999999877666655555443322111100
Q ss_pred -ccCCcCCCCCC-----ChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 -LEPGLLELDPE-----SSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 -~~~~~~~~~~~-----~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.++......+. ..... ....+++.+|++.||++||+++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 233 KYDPNFTVYEPLPWESFLKGLD--ESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp TCCTTCCCCCCCCGGGTCCSCC--HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ccccccccccCccHHHHhhhcC--HHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 01111000000 00000 112378999999999999999999864
No 94
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=4.9e-38 Score=354.25 Aligned_cols=245 Identities=21% Similarity=0.339 Sum_probs=202.4
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.++||+|+||.||+|+.+ +|+.||+|++.+.. ...+.+.+|+.+++.++||||+++++++.+. ...++
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~-~~~~l 83 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA-QQIFM 83 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS-SEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeC-CEEEE
Confidence 357999999999999999999875 68999999986432 2356788999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++|+|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++....
T Consensus 84 v~e~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~ 158 (318)
T 1fot_A 84 IMDYIEGGELFSLLRKSQ-----RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD 158 (318)
T ss_dssp EECCCCSCBHHHHHHHTS-----SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred EEeCCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence 999999999999998643 388999999999999999999999999999999999999999999999999975421
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||...+.......+... ...++
T Consensus 159 ------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~--~~~~p------- 223 (318)
T 1fot_A 159 ------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNA--ELRFP------- 223 (318)
T ss_dssp ------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHC--CCCCC-------
T ss_pred ------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhC--CCCCC-------
Confidence 223467999999999999999999999999999999999999999876655554444331 11111
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCC-----CHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-----SMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-----s~~evl~~ 1110 (1133)
.... ....+++.+|+..||++|| +++|++++
T Consensus 224 ----~~~~-----~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 224 ----PFFN-----EDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp ----TTSC-----HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred ----CCCC-----HHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 1100 1123788999999999999 89999853
No 95
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=1.4e-38 Score=361.80 Aligned_cols=273 Identities=23% Similarity=0.363 Sum_probs=206.1
Q ss_pred hcCCCcccccccccceeEEEEEE-----CCceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeC-CCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-----QDGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAG-PPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~~~~ 908 (1133)
.++|++.+.||+|+||.||+|++ .+++.||||++..... ..+.+.+|++++++++||||+++++++.. .....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 45899999999999999999984 3689999999975432 24568999999999999999999998864 34556
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++++|.+++..... .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 177 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRA----RLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 177 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGG----GCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEEC
T ss_pred EEEEeecCCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceec
Confidence 899999999999999987532 3899999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhH-----------HHHHHHHh
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDI-----------VKWVKKQL 1057 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~-----------~~~~~~~~ 1057 (1133)
..............||+.|+|||++.+..++.++||||+||++|+|++|+.||........ ...+.+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (327)
T 3lxl_A 178 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELL 257 (327)
T ss_dssp CTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHH
T ss_pred ccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHh
Confidence 4333322334455688899999999888889999999999999999999999864332211 11111111
Q ss_pred hhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCCCCC
Q 001171 1058 QRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPSSAD 1125 (1133)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~~~~ 1125 (1133)
....... .... ... ...+++.+||+.||++||++.|++++|+.+...........
T Consensus 258 ~~~~~~~--------~~~~---~~~--~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~~~~ 312 (327)
T 3lxl_A 258 EEGQRLP--------APPA---CPA--EVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGCETHA 312 (327)
T ss_dssp HTTCCCC--------CCTT---CCH--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----------
T ss_pred hcccCCC--------CCCc---ccH--HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCccccc
Confidence 1111000 0000 001 12378899999999999999999999999877665554433
No 96
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.2e-38 Score=373.21 Aligned_cols=257 Identities=22% Similarity=0.314 Sum_probs=206.6
Q ss_pred HHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
...++|++.++||+|+||+||+|+++ +++.||+|++.+.. ...+.+.+|.+++..++||||+++++++.+. ...
T Consensus 71 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~-~~~ 149 (437)
T 4aw2_A 71 LHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDD-NNL 149 (437)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECS-SEE
T ss_pred CChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC-CEE
Confidence 34679999999999999999999886 48999999986421 1234588999999999999999999999876 455
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+..
T Consensus 150 ~lV~Ey~~gg~L~~~l~~~~----~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~ 225 (437)
T 4aw2_A 150 YLVMDYYVGGDLLTLLSKFE----DRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKL 225 (437)
T ss_dssp EEEECCCTTCBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEecCCCCcHHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhc
Confidence 99999999999999998632 34899999999999999999999999999999999999999999999999999754
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccC-----CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAAS-----TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~ 1063 (1133)
.... .......+||+.|+|||++. ...++.++||||+||++|||++|+.||...+..+....+........++
T Consensus 226 ~~~~--~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p 303 (437)
T 4aw2_A 226 MEDG--TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFP 303 (437)
T ss_dssp CTTS--CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC
T ss_pred ccCC--CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCC
Confidence 3221 12234468999999999986 5568999999999999999999999998777766666654432222222
Q ss_pred ccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCC--CCCHHHHHHH
Q 001171 1064 ELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLD--RPSMADIVFM 1110 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~--RPs~~evl~~ 1110 (1133)
.... . ... ...+++.+|+..+|++ ||+++|++++
T Consensus 304 ~~~~----~---~s~------~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 304 TQVT----D---VSE------NAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp SSCC----C---SCH------HHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred cccc----c---CCH------HHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 2110 0 011 1237888999888888 9999999975
No 97
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.8e-38 Score=360.45 Aligned_cols=258 Identities=20% Similarity=0.329 Sum_probs=203.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-Cce----EEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGM----VLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~----~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++|++.++||+|+||.||+|.+. +++ .||+|.+.... ...+.+.+|+.++++++||||+++++++.. ...
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~ 89 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG--SSL 89 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB--SSE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--Ccc
Confidence 357899999999999999999874 344 47888875432 223567889999999999999999999864 345
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++..
T Consensus 90 ~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 165 (325)
T 3kex_A 90 QLVTQYLPLGSLLDHVRQHR----GALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLL 165 (325)
T ss_dssp EEEEECCTTCBSHHHHHSSG----GGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred EEEEEeCCCCCHHHHHHHcc----ccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCccccc
Confidence 89999999999999997642 24888999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
..... ........|+..|+|||++.+..++.++||||+||++|||++ |+.||......+....+.... ....+..+.
T Consensus 166 ~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~ 243 (325)
T 3kex_A 166 PPDDK-QLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGE-RLAQPQICT 243 (325)
T ss_dssp CCCTT-CCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTC-BCCCCTTBC
T ss_pred Ccccc-cccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCC-CCCCCCcCc
Confidence 33222 222344568889999999988899999999999999999999 999998766666555443321 111111111
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
+. ..+++.+||+.||++||++.|++++|+.+...
T Consensus 244 ~~----------------~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 244 ID----------------VYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp TT----------------TTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred HH----------------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 11 12788999999999999999999999887654
No 98
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=3.2e-38 Score=361.64 Aligned_cols=266 Identities=22% Similarity=0.372 Sum_probs=210.0
Q ss_pred HhcCCCcccccccccceeEEEEEEC------CceEEEEEEcccCCcC--HHHHHHHHHHHhhccCCCeeeEEEEEeCCCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ------DGMVLSIRRLRDGTID--ENTFRKEAEALGKVKHRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~ 906 (1133)
..++|++.+.||+|+||.||+|++. +++.||||++...... .+.+.+|++++++++||||+++++++.....
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 4578999999999999999999874 3589999999754322 4578999999999999999999999987644
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCC-------------------CCCCChHHHHHHHHHHHHHHHHHhcCCceecccCcc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQD-------------------GHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQ 967 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~-------------------~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~ 967 (1133)
.++||||+++|+|.+++....... ...+++..++.++.||++||+|||++||+||||||+
T Consensus 125 -~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~ 203 (343)
T 1luf_A 125 -MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATR 203 (343)
T ss_dssp -CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred -eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcc
Confidence 599999999999999998743211 145899999999999999999999999999999999
Q ss_pred ceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCCh
Q 001171 968 NVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQD 1046 (1133)
Q Consensus 968 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~ 1046 (1133)
||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus 204 NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 282 (343)
T 1luf_A 204 NCLVGENMVVKIADFGLSRNIYSADY-YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH 282 (343)
T ss_dssp GEEECGGGCEEECCCSCHHHHTGGGC-BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred eEEECCCCeEEEeecCCCcccccCcc-ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh
Confidence 99999999999999999975532211 122334568889999999988889999999999999999999 9999987666
Q ss_pred hhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1047 EDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
.+....+... ..... +... .. ...+++.+||+.||++||++.|++++|+++.....
T Consensus 283 ~~~~~~~~~~----~~~~~--------~~~~---~~--~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 283 EEVIYYVRDG----NILAC--------PENC---PL--ELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp HHHHHHHHTT----CCCCC--------CTTC---CH--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred HHHHHHHhCC----CcCCC--------CCCC---CH--HHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 5554443321 11111 0000 01 12378899999999999999999999999876544
No 99
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2.1e-38 Score=350.14 Aligned_cols=250 Identities=24% Similarity=0.402 Sum_probs=193.1
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCc-----CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI-----DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.++||+|+||.||+|.+. |+.||||++..... ..+.+.+|++++++++||||+++++++..... .++
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-~~l 83 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPN-LCL 83 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC---CEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc-eEE
Confidence 357899999999999999999876 88999999864322 24678999999999999999999999987644 499
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC---ceecccCccceeeCC--------CCceEE
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD---MVHGDIKPQNVLFDA--------DFEAHL 979 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~---ivH~Dlkp~NIll~~--------~~~~kl 979 (1133)
||||+++++|.+++.. ..+++..+..++.|+++|++|||++| |+||||||+||+++. ++.+|+
T Consensus 84 v~e~~~~~~L~~~~~~------~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl 157 (271)
T 3dtc_A 84 VMEFARGGPLNRVLSG------KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKI 157 (271)
T ss_dssp EEECCTTEEHHHHHTS------SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEE
T ss_pred EEEcCCCCCHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEE
Confidence 9999999999999863 34889999999999999999999999 899999999999986 678999
Q ss_pred eccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhh
Q 001171 980 SEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQR 1059 (1133)
Q Consensus 980 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~ 1059 (1133)
+|||+++..... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||...........+...
T Consensus 158 ~Dfg~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~--- 229 (271)
T 3dtc_A 158 TDFGLAREWHRT-----TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMN--- 229 (271)
T ss_dssp CCCCC------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTS---
T ss_pred ccCCcccccccc-----cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcC---
Confidence 999998654221 122456899999999998888999999999999999999999999766554433332221
Q ss_pred ccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcC
Q 001171 1060 GQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGC 1114 (1133)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~ 1114 (1133)
......... ... ...+++.+||+.||++||++.|++++|+++
T Consensus 230 -~~~~~~~~~------~~~------~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 230 -KLALPIPST------CPE------PFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp -CCCCCCCTT------CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred -CCCCCCCcc------cCH------HHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 111101100 011 123788999999999999999999999864
No 100
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=1.7e-37 Score=349.55 Aligned_cols=281 Identities=29% Similarity=0.502 Sum_probs=218.5
Q ss_pred CcccHHHHHHHhcCCCcc------cccccccceeEEEEEECCceEEEEEEcccCC-----cCHHHHHHHHHHHhhccCCC
Q 001171 825 NKITYVETLEATRQFDEE------NVLSRGRYGLIFKASYQDGMVLSIRRLRDGT-----IDENTFRKEAEALGKVKHRN 893 (1133)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpn 893 (1133)
..+++.+...++..|... +.||+|+||.||+|.+ +++.||||++.... ...+.+.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 356788888888888877 8999999999999987 58899999986432 12467899999999999999
Q ss_pred eeeEEEEEeCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC
Q 001171 894 LTVLRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA 973 (1133)
Q Consensus 894 iv~l~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~ 973 (1133)
|+++++++..... .++||||+++|+|.+++..... ...+++..+..++.||+.||+|||+.||+||||||+||+++.
T Consensus 92 i~~~~~~~~~~~~-~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~ 168 (307)
T 2nru_A 92 LVELLGFSSDGDD-LCLVYVYMPNGSLLDRLSCLDG--TPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE 168 (307)
T ss_dssp BCCEEEEECSSSS-CEEEEECCTTCBHHHHHHTGGG--CCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECT
T ss_pred eEEEEEEEecCCc-eEEEEEecCCCcHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcC
Confidence 9999999987644 4999999999999999976432 245899999999999999999999999999999999999999
Q ss_pred CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHH
Q 001171 974 DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWV 1053 (1133)
Q Consensus 974 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~ 1053 (1133)
++.+||+|||+++....... ........||+.|+|||++.+ .++.++||||+||++|+|++|+.||...........+
T Consensus 169 ~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~ 246 (307)
T 2nru_A 169 AFTAKISDFGLARASEKFAQ-TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDI 246 (307)
T ss_dssp TCCEEECCCTTCEECCSCSS-CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHH
T ss_pred CCcEEEeecccccccccccc-cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHH
Confidence 99999999999875432211 112334579999999999865 5789999999999999999999999765443333333
Q ss_pred HHHhhh--ccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1054 KKQLQR--GQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1054 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
.+.... ..+.+.+++.... ..... .....+++.+||+.||.+||++.|++++|+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 247 KEEIEDEEKTIEDYIDKKMND---ADSTS--VEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHTTSCCHHHHSCSSCSC---CCHHH--HHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHhhhhhhhhhhhccccccc---cchHH--HHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 332221 1223333333321 11111 2223379999999999999999999999998654
No 101
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=4.4e-38 Score=347.49 Aligned_cols=253 Identities=25% Similarity=0.391 Sum_probs=203.7
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCC-CCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGP-PDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~-~~~~~lV 911 (1133)
.++|++.+.||+|+||.||+|+++ ++.||||++...... .+.+.+|++++++++||||+++++++... ....++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 357999999999999999999986 889999999754433 35788999999999999999999999765 2455899
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC--ceecccCccceeeCCCCceEEeccCcccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD--MVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
|||+++|+|.+++..... ..+++..+..++.||+.||+|||+.+ |+||||||+||+++.++.++++|||++...
T Consensus 88 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~- 163 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTN---FVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF- 163 (271)
T ss_dssp EECCTTCBHHHHHHSCSS---CCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT-
T ss_pred ecccCCCcHHHHHhhccc---CCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeee-
Confidence 999999999999986432 34899999999999999999999999 999999999999999999999999876431
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCC---CCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTK---EADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
......||+.|+|||++.+..++. ++||||+||++|||++|+.||......+....+........ .
T Consensus 164 -------~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~----~ 232 (271)
T 3kmu_A 164 -------QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPT----I 232 (271)
T ss_dssp -------SCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCC----C
T ss_pred -------cccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCC----C
Confidence 223356899999999997765544 79999999999999999999987665554443332211111 1
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
.... .. ...+++.+||+.||++||++.|+++.|+.+..
T Consensus 233 ~~~~------~~------~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 233 PPGI------SP------HVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp CTTC------CH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred CCCC------CH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 1110 11 12378889999999999999999999998654
No 102
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.5e-38 Score=369.64 Aligned_cols=253 Identities=19% Similarity=0.275 Sum_probs=204.9
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
..++|++.++||+|+||.||+|+++ +++.||+|++.+. ....+.+.+|+++++.++|||||++++++.+. ...+
T Consensus 67 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~-~~~~ 145 (410)
T 3v8s_A 67 KAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD-RYLY 145 (410)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS-SEEE
T ss_pred CccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-CEEE
Confidence 4568999999999999999999886 5899999998642 12235688999999999999999999999876 4569
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.++++.. .+++..+..++.||+.||+|||++||+||||||+|||++.++++||+|||+++...
T Consensus 146 lV~E~~~gg~L~~~l~~~------~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~ 219 (410)
T 3v8s_A 146 MVMEYMPGGDLVNLMSNY------DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN 219 (410)
T ss_dssp EEECCCTTEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEEeCCCCCcHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeec
Confidence 999999999999999753 27899999999999999999999999999999999999999999999999997543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCC----CCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQ----PTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
... .......+||+.|+|||++.+.. ++.++||||+||++|||++|+.||...+..+....+........++..
T Consensus 220 ~~~--~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~ 297 (410)
T 3v8s_A 220 KEG--MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDD 297 (410)
T ss_dssp TTS--EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTT
T ss_pred cCC--cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCc
Confidence 221 12234568999999999997654 789999999999999999999999877776666655443222111110
Q ss_pred ccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCC--CCCHHHHHHH
Q 001171 1066 LEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLD--RPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~--RPs~~evl~~ 1110 (1133)
..+ . ....+++.+|+..+|.+ ||+++||+++
T Consensus 298 --~~~------s------~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 298 --NDI------S------KEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp --CCC------C------HHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred --ccc------c------HHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 000 0 11237889999999988 9999999976
No 103
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.1e-38 Score=357.04 Aligned_cols=264 Identities=20% Similarity=0.328 Sum_probs=200.0
Q ss_pred hcCCCcccccccccceeEEEEEE-----CCceEEEEEEcccCCcC-HHHHHHHHHHHhhccCCCeeeEEEEEeCC-CCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-----QDGMVLSIRRLRDGTID-ENTFRKEAEALGKVKHRNLTVLRGYYAGP-PDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~-~~~~~~E~~~l~~l~hpniv~l~~~~~~~-~~~~ 908 (1133)
.++|++.+.||+|+||.||+|++ .+++.||||++...... .+.+.+|++++++++||||+++++++... ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46899999999999999999984 35899999999754322 36788999999999999999999998542 2345
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++|+|.+++..... .+++..+..++.|++.||+|||+.||+||||||+||+++.++.+||+|||+++..
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~ 164 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKE----RIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGG----GCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC--
T ss_pred EEEEEeCCCCCHHHHHHhccc----ccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccc
Confidence 899999999999999987532 3889999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChh------------hHHHHHHHH
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE------------DIVKWVKKQ 1056 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~------------~~~~~~~~~ 1056 (1133)
..............++..|+|||++.+..++.++||||+||++|||++|..||...... .....+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (295)
T 3ugc_A 165 PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 244 (295)
T ss_dssp -----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred cCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHH
Confidence 43332222333455778899999999889999999999999999999999998532211 011111111
Q ss_pred hhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1057 LQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
........ .+.. ... ...+++.+||+.||++||++.|+++.|+.+..
T Consensus 245 ~~~~~~~~--------~~~~---~~~--~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~ 291 (295)
T 3ugc_A 245 LKNNGRLP--------RPDG---CPD--EIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291 (295)
T ss_dssp HHTTCCCC--------CCTT---CCH--HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HhccCcCC--------CCcC---cCH--HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 11111000 0000 001 12378899999999999999999999988754
No 104
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=4.9e-38 Score=359.00 Aligned_cols=244 Identities=20% Similarity=0.277 Sum_probs=202.9
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|++.+.||+|+||.||+|+++ +|+.||+|++.+.. ...+.+.+|++++++++||||+++++++.+. ...++|
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv 119 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN-SNLYMV 119 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC-CEEEEE
Confidence 57999999999999999999875 68999999986432 2356788999999999999999999999876 455999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++....
T Consensus 120 ~e~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~- 193 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIG-----RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG- 193 (350)
T ss_dssp EECCTTCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS-
T ss_pred EcCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccC-
Confidence 99999999999998753 388999999999999999999999999999999999999999999999999975422
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+....+... ...++. .+
T Consensus 194 -----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~p~----~~- 261 (350)
T 1rdq_E 194 -----RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG--KVRFPS----HF- 261 (350)
T ss_dssp -----CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCT----TC-
T ss_pred -----CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcC--CCCCCC----CC-
Confidence 223467999999999999999999999999999999999999999877666555544432 111110 00
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCC-----HHHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPS-----MADIVFM 1110 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs-----~~evl~~ 1110 (1133)
.. ...+++.+||+.||++||+ ++|++++
T Consensus 262 -----~~------~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h 294 (350)
T 1rdq_E 262 -----SS------DLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH 294 (350)
T ss_dssp -----CH------HHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred -----CH------HHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence 01 1237899999999999998 8888854
No 105
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=371.79 Aligned_cols=320 Identities=24% Similarity=0.249 Sum_probs=211.8
Q ss_pred cEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccc
Q 001171 366 EVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSEN 445 (1133)
Q Consensus 366 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 445 (1133)
+.++.+++.++. +|..+. ++++.|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 467777777764 344432 46788888888887777777778888888888888887777777777888888888888
Q ss_pred cccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCCh
Q 001171 446 DIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPI 525 (1133)
Q Consensus 446 ~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 525 (1133)
+++...+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 77766666677777777788777777777777777777777777777777777777777777777777777777765556
Q ss_pred hccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCc
Q 001171 526 ELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSAL 605 (1133)
Q Consensus 526 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 605 (1133)
.+.++++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.++.......+|++|+|++|++++..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 67777777777777777776666666667777777777666655555544444456666666666554333445555555
Q ss_pred cEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccc
Q 001171 606 EVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTN 685 (1133)
Q Consensus 606 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 685 (1133)
+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 55555555555444444555555555555555555555555555555555555555555444444555555555555555
Q ss_pred ccc
Q 001171 686 RLS 688 (1133)
Q Consensus 686 ~l~ 688 (1133)
+++
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 554
No 106
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.1e-37 Score=347.41 Aligned_cols=252 Identities=25% Similarity=0.459 Sum_probs=198.8
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC--------HHHHHHHHHHHhhccCCCeeeEEEEEeCCCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID--------ENTFRKEAEALGKVKHRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~--------~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~ 906 (1133)
.++|++.+.||+|+||.||+|++. +++.||+|++...... .+.+.+|++++++++||||+++++++....
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 457999999999999999999874 6899999998643322 167899999999999999999999986643
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC--ceecccCccceeeCCCCc-----eEE
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD--MVHGDIKPQNVLFDADFE-----AHL 979 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~--ivH~Dlkp~NIll~~~~~-----~kl 979 (1133)
++||||+++|+|.+++.... ..+++..+..++.|++.|++|||++| |+||||||+||+++.++. +||
T Consensus 97 --~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl 170 (287)
T 4f0f_A 97 --RMVMEFVPCGDLYHRLLDKA----HPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKV 170 (287)
T ss_dssp --EEEEECCTTCBHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEE
T ss_pred --eEEEEecCCCCHHHHHhccc----CCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEe
Confidence 79999999999999887533 34899999999999999999999999 999999999999988776 999
Q ss_pred eccCcccccccCCCCCCCCCCCCCCCCccCccccC--CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHh
Q 001171 980 SEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAAS--TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQL 1057 (1133)
Q Consensus 980 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~ 1057 (1133)
+|||+++... .......||+.|+|||++. ...++.++||||+||++|||++|+.||........... ...
T Consensus 171 ~Dfg~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~-~~~- 242 (287)
T 4f0f_A 171 ADFGLSQQSV------HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFI-NMI- 242 (287)
T ss_dssp CCCTTCBCCS------SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHH-HHH-
T ss_pred CCCCcccccc------ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHH-HHH-
Confidence 9999986332 1233457899999999983 44578899999999999999999999976554432211 111
Q ss_pred hhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcC
Q 001171 1058 QRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGC 1114 (1133)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~ 1114 (1133)
............. . ....+++.+||+.||++||++.|+++.|+++
T Consensus 243 ~~~~~~~~~~~~~------~------~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 243 REEGLRPTIPEDC------P------PRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HHSCCCCCCCTTS------C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred hccCCCCCCCccc------C------HHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 1111111111110 0 1123788999999999999999999999864
No 107
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=9.3e-38 Score=360.76 Aligned_cols=251 Identities=21% Similarity=0.354 Sum_probs=197.7
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc----CHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI----DENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.++||+|+||.||+|+++ +++.||+|++.+... ..+.+.+|..+++++ +||||+++++++... ...+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~-~~~~ 129 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-SRLF 129 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECS-SEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEEC-CEEE
Confidence 457999999999999999999876 589999999975432 234678899999887 899999999999876 4559
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.+++.+.+ .+++..+..++.||+.||+|||++||+||||||+|||++.++++||+|||+++...
T Consensus 130 lV~E~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~ 204 (396)
T 4dc2_A 130 FVIEYVNGGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 204 (396)
T ss_dssp EEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEEcCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence 9999999999999998753 38999999999999999999999999999999999999999999999999997432
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhh-----HHHHHHHHhhhccccc
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDED-----IVKWVKKQLQRGQISE 1064 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~ 1064 (1133)
.. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ....+.+......+
T Consensus 205 ~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~-- 279 (396)
T 4dc2_A 205 RP---GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-- 279 (396)
T ss_dssp CT---TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCC--
T ss_pred cC---CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcccc--
Confidence 21 223445689999999999999999999999999999999999999996432111 11112222211111
Q ss_pred cccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCH------HHHHH
Q 001171 1065 LLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSM------ADIVF 1109 (1133)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~------~evl~ 1109 (1133)
.++.... ....+++.+||+.||++||++ +|+++
T Consensus 280 -------~~p~~~s-----~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~ 318 (396)
T 4dc2_A 280 -------RIPRSLS-----VKAASVLKSFLNKDPKERLGCHPQTGFADIQG 318 (396)
T ss_dssp -------CCCTTSC-----HHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHH
T ss_pred -------CCCCcCC-----HHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhc
Confidence 0111100 112378999999999999985 67764
No 108
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=8.5e-38 Score=356.93 Aligned_cols=249 Identities=22% Similarity=0.315 Sum_probs=203.2
Q ss_pred HhcCCCcccccccccceeEEEEEECC-ceEEEEEEcccC----CcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQD-GMVLSIRRLRDG----TIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~~~~~----~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~ 908 (1133)
..++|++.++||+|+||.||+|+++. |+.||||++.+. ....+.+.+|.+++..+ +||+|+++++++... +..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~-~~~ 96 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM-DRL 96 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECS-SEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcC-CEE
Confidence 45689999999999999999998864 889999998643 22356788999999988 899999999999876 456
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
|+||||+++|+|.+++...+ .+++..++.++.||+.||+|||++||+||||||+||+++.++++||+|||+++..
T Consensus 97 ~lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~ 171 (353)
T 2i0e_A 97 YFVMEYVNGGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 171 (353)
T ss_dssp EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCccccc
Confidence 99999999999999998753 3889999999999999999999999999999999999999999999999998743
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...+..++...+... ...++
T Consensus 172 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~--~~~~p----- 241 (353)
T 2i0e_A 172 IWD---GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEH--NVAYP----- 241 (353)
T ss_dssp CCT---TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCC-----
T ss_pred ccC---CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhC--CCCCC-----
Confidence 211 22334568999999999999999999999999999999999999999877766655554431 11111
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCC-----HHHHHHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPS-----MADIVFM 1110 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs-----~~evl~~ 1110 (1133)
.... ....+++.+|++.||.+||+ +.|++++
T Consensus 242 ------~~~s-----~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h 277 (353)
T 2i0e_A 242 ------KSMS-----KEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 277 (353)
T ss_dssp ------TTSC-----HHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred ------CCCC-----HHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence 0000 11237899999999999995 5777754
No 109
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.4e-38 Score=353.60 Aligned_cols=250 Identities=20% Similarity=0.315 Sum_probs=194.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---------------------------CHHHHHHHHHHHh
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---------------------------DENTFRKEAEALG 887 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---------------------------~~~~~~~E~~~l~ 887 (1133)
.++|++.+.||+|+||.||+|.+. +++.||||++..... ..+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 357999999999999999999875 689999999864321 1246889999999
Q ss_pred hccCCCeeeEEEEEeCC-CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCc
Q 001171 888 KVKHRNLTVLRGYYAGP-PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKP 966 (1133)
Q Consensus 888 ~l~hpniv~l~~~~~~~-~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp 966 (1133)
+++||||+++++++... ....++||||+++++|.+++.. ..+++..+..++.||++||+|||++||+||||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp 165 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL------KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKP 165 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCH
Confidence 99999999999999763 4566899999999998775432 3489999999999999999999999999999999
Q ss_pred cceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCC---CCCCCchhHHHHHHHHHHhCCCCCcc
Q 001171 967 QNVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQ---PTKEADVYSFGIVLLEILTGRKPVMF 1043 (1133)
Q Consensus 967 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlG~il~el~tg~~Pf~~ 1043 (1133)
+||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++||||+||++|||++|+.||..
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 242 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSD---ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD 242 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSS---CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHEEECCCCCEEEecCCCcccccccc---ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 99999999999999999987543221 1223457999999999997655 37789999999999999999999976
Q ss_pred CChhhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1044 TQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.........+... ... ... . ..... ...+++.+||+.||++||++.|++++
T Consensus 243 ~~~~~~~~~~~~~----~~~-~~~--~---~~~~~------~l~~li~~~l~~dp~~R~s~~e~l~h 293 (298)
T 2zv2_A 243 ERIMCLHSKIKSQ----ALE-FPD--Q---PDIAE------DLKDLITRMLDKNPESRIVVPEIKLH 293 (298)
T ss_dssp SSHHHHHHHHHHC----CCC-CCS--S---SCCCH------HHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred ccHHHHHHHHhcc----cCC-CCC--c---cccCH------HHHHHHHHHhhcChhhCCCHHHHhcC
Confidence 6554443333221 110 000 0 00111 12378899999999999999999753
No 110
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-38 Score=352.97 Aligned_cols=268 Identities=19% Similarity=0.296 Sum_probs=214.3
Q ss_pred cCCCccc-ccccccceeEEEEEEC---CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 837 RQFDEEN-VLSRGRYGLIFKASYQ---DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 837 ~~~~~~~-~lg~G~~g~Vy~~~~~---~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
++|.+.+ .||+|+||.||+|.++ ++..||+|++..... ..+.+.+|++++++++||||+++++++.. +..++
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--~~~~l 86 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA--EALML 86 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES--SSEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecC--CCcEE
Confidence 4566666 8999999999999764 578899999976432 34678899999999999999999999954 34699
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.+++.... ..+++..+..++.||++||+|||+.||+||||||+||+++.++.+||+|||+++....
T Consensus 87 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~ 162 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162 (287)
T ss_dssp EEECCTTEEHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred EEEeCCCCCHHHHHHhCC----ccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence 999999999999997432 3489999999999999999999999999999999999999999999999999976543
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
............+|+.|+|||++.+..++.++||||+||++|||++ |+.||......+....+.... ... ..+.
T Consensus 163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~----~~~-~~~~ 237 (287)
T 1u59_A 163 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK----RME-CPPE 237 (287)
T ss_dssp CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTC----CCC-CCTT
T ss_pred CcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCC----cCC-CCCC
Confidence 3322223344567889999999988889999999999999999998 999998766655554443321 111 0110
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCCCCCCC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPSSADPT 1127 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~~~~~~ 1127 (1133)
... ...+++.+||+.||++||++.|++++|+.+......+.++.+.
T Consensus 238 ------~~~------~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~~~~ 283 (287)
T 1u59_A 238 ------CPP------ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGHHH 283 (287)
T ss_dssp ------CCH------HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred ------cCH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccCCcc
Confidence 011 1227889999999999999999999999988877777666544
No 111
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2.3e-38 Score=357.12 Aligned_cols=260 Identities=22% Similarity=0.304 Sum_probs=194.9
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcC----HHHHHHHHHHHhhccCCCeeeEEEEEeCCCC---c
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTID----ENTFRKEAEALGKVKHRNLTVLRGYYAGPPD---V 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~---~ 907 (1133)
.++|++.+.||+|+||.||+|++ .+++.||||++...... ...+.+|++++++++||||+++++++..... .
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 45799999999999999999987 56899999999754322 2468899999999999999999999865322 2
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.++||||+++++|.++++..+ .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-----PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred cEEEEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 489999999999999998643 388999999999999999999999999999999999999999999999999976
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccc-cc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISE-LL 1066 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~-~~ 1066 (1133)
...............||+.|+|||++.+..++.++||||+||++|||++|+.||......+....... ...... ..
T Consensus 166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~---~~~~~~~~~ 242 (311)
T 3ork_A 166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVR---EDPIPPSAR 242 (311)
T ss_dssp ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH---CCCCCHHHH
T ss_pred ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhc---CCCCCcccc
Confidence 54333322333456799999999999988999999999999999999999999976665443332222 111100 00
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHH-HHHhcCc
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIV-FMLEGCR 1115 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl-~~Le~~~ 1115 (1133)
...+ .. ...+++.+||+.||++||++.+++ +.+....
T Consensus 243 ~~~~------~~------~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 280 (311)
T 3ork_A 243 HEGL------SA------DLDAVVLKALAKNPENRYQTAAEMRADLVRVH 280 (311)
T ss_dssp STTC------CH------HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred cCCC------CH------HHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence 0000 00 122788999999999999766655 4555443
No 112
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=8.9e-38 Score=354.59 Aligned_cols=248 Identities=19% Similarity=0.321 Sum_probs=194.4
Q ss_pred hcCCCcccccccccceeEEEEEE----CCceEEEEEEcccCC-----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY----QDGMVLSIRRLRDGT-----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~ 906 (1133)
.++|++.++||+|+||.||+|+. .+|+.||+|++.+.. .....+.+|++++++++||||+++++++....
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 94 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG- 94 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS-
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC-
Confidence 45799999999999999999987 468999999997542 22356788999999999999999999998764
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
..++||||+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++
T Consensus 95 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~ 169 (327)
T 3a62_A 95 KLYLILEYLSGGELFMQLEREG-----IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCK 169 (327)
T ss_dssp CEEEEEECCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred EEEEEEeCCCCCcHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence 4599999999999999998643 37889999999999999999999999999999999999999999999999986
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||...........+.+.. ..++
T Consensus 170 ~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~--~~~p--- 241 (327)
T 3a62_A 170 ESIHD---GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCK--LNLP--- 241 (327)
T ss_dssp ------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC--CCCC---
T ss_pred ccccC---CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCC--CCCC---
Confidence 43221 122344579999999999999899999999999999999999999998766655554443321 1111
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCC-----CHHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-----SMADIVFM 1110 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-----s~~evl~~ 1110 (1133)
.... ....+++.+||+.||++|| ++.|++++
T Consensus 242 --------~~~~-----~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 242 --------PYLT-----QEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp --------TTSC-----HHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred --------CCCC-----HHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 1100 1123788999999999999 78888764
No 113
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=5.7e-38 Score=357.20 Aligned_cols=261 Identities=13% Similarity=0.178 Sum_probs=206.9
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ..+.+.+|+++++++ +||||+++++++... ...++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~-~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS-RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCG-KYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC-SSCCHHHHHHHHHHHCSCTTSCCEEEEEEET-TEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc-chHHHHHHHHHHHHhhCCCCCCEEEEEEecC-CccEEEEE
Confidence 35799999999999999999986 568999999987543 245688999999999 999999999999875 45599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc-----eEEeccCccccc
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE-----AHLSEFGLDRLA 988 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~-----~kl~Dfg~a~~~ 988 (1133)
|+ +++|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++. +||+|||+++..
T Consensus 86 ~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~ 160 (330)
T 2izr_A 86 LL-GPSLEDLFDLCD----RTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEY 160 (330)
T ss_dssp CC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEES
T ss_pred eC-CCCHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceee
Confidence 99 999999998642 34899999999999999999999999999999999999999887 999999999765
Q ss_pred ccCCCCC----CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhc--cc
Q 001171 989 IATPAEA----SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRG--QI 1062 (1133)
Q Consensus 989 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~--~~ 1062 (1133)
....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+....+....... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~ 240 (330)
T 2izr_A 161 IDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATP 240 (330)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSC
T ss_pred ecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCC
Confidence 4332211 12345679999999999999999999999999999999999999998655444333333221110 00
Q ss_pred cccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1063 SELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
.+.... . +. ...+++.+||+.||.+||++.+|++.|+.+..
T Consensus 241 ~~~~~~-------~---~p---~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~ 281 (330)
T 2izr_A 241 IEVLCE-------N---FP---EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 281 (330)
T ss_dssp HHHHTT-------T---CH---HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHhc-------c---Ch---HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 000000 0 11 22378889999999999999999999976543
No 114
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=367.64 Aligned_cols=256 Identities=21% Similarity=0.294 Sum_probs=204.2
Q ss_pred HHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
...++|++.++||+|+||.||+|+++ +|+.||||++.+.. ...+.+.+|.+++.+++||||+++++++.+. +..
T Consensus 58 ~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~-~~~ 136 (412)
T 2vd5_A 58 LQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDE-NYL 136 (412)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECS-SEE
T ss_pred CChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC-CEE
Confidence 34678999999999999999999885 68999999986422 1234578999999999999999999999876 456
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
|+||||+++|+|.+++.+.+ ..+++..+..++.||+.||+|||++||+||||||+|||++.++++||+|||+++..
T Consensus 137 ~lVmE~~~gg~L~~~l~~~~----~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~ 212 (412)
T 2vd5_A 137 YLVMEYYVGGDLLTLLSKFG----ERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKL 212 (412)
T ss_dssp EEEECCCCSCBHHHHHHHHS----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEcCCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheec
Confidence 99999999999999998753 24889999999999999999999999999999999999999999999999999754
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccC-------CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAAS-------TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQ 1061 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~ 1061 (1133)
.... .......+||+.|+|||++. +..++.++||||+||++|||++|+.||...+..+....+........
T Consensus 213 ~~~~--~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~ 290 (412)
T 2vd5_A 213 RADG--TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLS 290 (412)
T ss_dssp CTTS--CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCC
T ss_pred cCCC--ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcC
Confidence 3221 11233468999999999986 35689999999999999999999999987776666555543322211
Q ss_pred ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCC---CCHHHHHHH
Q 001171 1062 ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDR---PSMADIVFM 1110 (1133)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~R---Ps~~evl~~ 1110 (1133)
++.. +..+ . ....+++.+|+. +|++| |+++|++++
T Consensus 291 ~p~~-~~~~------s------~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 291 LPLV-DEGV------P------EEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp CC-----CC------C------HHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred CCcc-ccCC------C------HHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 1110 0000 0 112378999999 99998 699999865
No 115
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.2e-37 Score=362.65 Aligned_cols=280 Identities=20% Similarity=0.313 Sum_probs=200.3
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---CHHHHHHHHHHHhhcc-CCCeeeEEEEEeCCC-CcE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---DENTFRKEAEALGKVK-HRNLTVLRGYYAGPP-DVR 908 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l~-hpniv~l~~~~~~~~-~~~ 908 (1133)
..++|++.+.||+|+||.||+|.++ +|+.||||++..... ..+.+.+|+.+++++. ||||+++++++...+ ...
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4678999999999999999999775 689999999865332 2456778999999997 999999999997543 356
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
|+||||++ |+|.+++... .+++..+..++.||++||+|||+.||+||||||+||+++.++.+||+|||+|+..
T Consensus 87 ~lv~e~~~-~~L~~~~~~~------~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 159 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN------ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSF 159 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred EEEecccC-cCHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence 99999996 6899998762 3888999999999999999999999999999999999999999999999999754
Q ss_pred ccCCC------------------CCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhH
Q 001171 989 IATPA------------------EASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDI 1049 (1133)
Q Consensus 989 ~~~~~------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~ 1049 (1133)
..... ........+||+.|+|||++.+ ..++.++||||+||++|||++|++||...+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~ 239 (388)
T 3oz6_A 160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ 239 (388)
T ss_dssp SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 32110 1112344689999999999976 6789999999999999999999999987776665
Q ss_pred HHHHHHHhhhccccccc--cCC----------------cCCCCCCChhHHHH-----------HHhHhhhhccCCCCCCC
Q 001171 1050 VKWVKKQLQRGQISELL--EPG----------------LLELDPESSEWEEF-----------LLGVKVGLLCTAPDPLD 1100 (1133)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~-----------~~~~~li~~Cl~~dP~~ 1100 (1133)
...+............. ... ..........+... ....+++.+||+.||++
T Consensus 240 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~ 319 (388)
T 3oz6_A 240 LERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNK 319 (388)
T ss_dssp HHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGG
T ss_pred HHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCccc
Confidence 55554433221110000 000 00000000111110 12348999999999999
Q ss_pred CCCHHHHHHH--HhcCcCCCCCC
Q 001171 1101 RPSMADIVFM--LEGCRVGPDMP 1121 (1133)
Q Consensus 1101 RPs~~evl~~--Le~~~~~~~~~ 1121 (1133)
|||++|++++ +..+....+.|
T Consensus 320 R~t~~e~l~Hp~~~~~~~~~~~~ 342 (388)
T 3oz6_A 320 RISANDALKHPFVSIFHNPNEEP 342 (388)
T ss_dssp SCCHHHHTTSTTTTTTCCGGGCC
T ss_pred CCCHHHHhCCHHHHHhcCCccCC
Confidence 9999999987 55544443333
No 116
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=4.6e-38 Score=380.36 Aligned_cols=263 Identities=24% Similarity=0.421 Sum_probs=215.1
Q ss_pred HhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
..++|++.++||+|+||.||+|.++.+..||||++.......+.|.+|++++++++||||+++++++.. +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~--~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee--ccceEeeeh
Confidence 345789999999999999999999888899999998776677889999999999999999999999876 345899999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAE 994 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 994 (1133)
+++|+|.++++.... ..+++..+..++.||++||+|||+++|+||||||+|||++.++.+||+|||+++..... .
T Consensus 343 ~~~gsL~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~--~ 417 (535)
T 2h8h_A 343 MSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN--E 417 (535)
T ss_dssp CTTEEHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH--H
T ss_pred hcCCcHHHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCC--c
Confidence 999999999976432 23889999999999999999999999999999999999999999999999999754221 1
Q ss_pred CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCC
Q 001171 995 ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 995 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
........++..|+|||++.+..++.++|||||||++|||++ |+.||......+....+.+..+. . ....
T Consensus 418 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~----~-~~~~---- 488 (535)
T 2h8h_A 418 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM----P-CPPE---- 488 (535)
T ss_dssp HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCC----C-CCTT----
T ss_pred eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC----C-CCCC----
Confidence 112233457789999999988899999999999999999999 99999877666655544332110 0 0000
Q ss_pred CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCC
Q 001171 1074 DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMP 1121 (1133)
Q Consensus 1074 ~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~ 1121 (1133)
.. + ...+++.+||+.||++||++.+|++.|+.+....+..
T Consensus 489 --~~----~--~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~~ 528 (535)
T 2h8h_A 489 --CP----E--SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 528 (535)
T ss_dssp --CC----H--HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSCS
T ss_pred --CC----H--HHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCcc
Confidence 00 1 1237889999999999999999999999987665544
No 117
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=358.91 Aligned_cols=249 Identities=20% Similarity=0.287 Sum_probs=198.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.++||+|+||.||+|+++ +++.||+|++... ....+.+.+|++++++++|||||++++++.... ..++
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~-~~~l 92 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE-DMFM 92 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-EEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC-EEEE
Confidence 357999999999999999999875 5899999998642 223567889999999999999999999998764 4599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++|+|.+++... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++....
T Consensus 93 v~e~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 167 (384)
T 4fr4_A 93 VVDLLLGGDLRYHLQQN-----VHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR 167 (384)
T ss_dssp EECCCTTEEHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence 99999999999999863 2388999999999999999999999999999999999999999999999999975422
Q ss_pred CCCCCCCCCCCCCCCCccCccccCC---CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAAST---GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...........+.... ....
T Consensus 168 ----~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-~~~~----- 237 (384)
T 4fr4_A 168 ----ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFE-TTVV----- 237 (384)
T ss_dssp ----TCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHH-HCCC-----
T ss_pred ----CCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHh-hccc-----
Confidence 223345679999999999864 458999999999999999999999997544433332222211 1110
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCC-HHHHHH
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPS-MADIVF 1109 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs-~~evl~ 1109 (1133)
.++... . ....+++.+||+.||.+||+ ++++.+
T Consensus 238 ----~~p~~~---s--~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 238 ----TYPSAW---S--QEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp ----CCCTTS---C--HHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred ----CCCCcC---C--HHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 000010 0 11237899999999999998 677664
No 118
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=1.9e-37 Score=350.49 Aligned_cols=270 Identities=20% Similarity=0.306 Sum_probs=193.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||+|++..... ..+.+.+|++++++++||||+++++++... +..++||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~ 82 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTE-NKLTLVF 82 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCT-TEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEEC-CeEEEEE
Confidence 457999999999999999999775 589999999864332 346788999999999999999999999876 4559999
Q ss_pred eccCCCCHHHHHHhhccC-CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 913 DYMPNGNLATLLQEASHQ-DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~-~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
||++ |+|.+++...... ....+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 161 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIP 161 (317)
T ss_dssp ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSC
T ss_pred EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCC
Confidence 9997 6999999765422 2234889999999999999999999999999999999999999999999999998754321
Q ss_pred CCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc---cc--
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS---EL-- 1065 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~---~~-- 1065 (1133)
........||+.|+|||++.+. .++.++||||+||++|||++|+.||......+....+.+........ ..
T Consensus 162 ---~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 238 (317)
T 2pmi_A 162 ---VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTK 238 (317)
T ss_dssp ---CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGG
T ss_pred ---cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhh
Confidence 1223345789999999999764 58999999999999999999999998877766666655543221100 00
Q ss_pred ---ccCCcCCCCCC-ChhHH------HH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 ---LEPGLLELDPE-SSEWE------EF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ---~~~~~~~~~~~-~~~~~------~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+........ ..... .+ ....+++.+|++.||++|||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 239 LPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp CTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 00000000000 00000 00 123388999999999999999999875
No 119
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3e-38 Score=357.60 Aligned_cols=254 Identities=22% Similarity=0.274 Sum_probs=198.3
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|++.+.||+|+||.||+|.++ +++.||||++..... ..+.+.+|++++++++||||+++++++... ...++||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~~lv~ 84 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-NIQYLFL 84 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecC-CeEEEEE
Confidence 468999999999999999999876 689999999864332 235688999999999999999999999876 4559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++|+|.+++... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++......
T Consensus 85 e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 159 (323)
T 3tki_A 85 EYCSGGELFDRIEPD-----IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (323)
T ss_dssp ECCTTEEGGGGSBTT-----TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred EcCCCCcHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence 999999999988653 348999999999999999999999999999999999999999999999999997543222
Q ss_pred CCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 993 AEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
. ........||+.|+|||++.+..+ +.++||||+||++|||++|+.||............... ... ... ...
T Consensus 160 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~--~~~---~~~-~~~ 232 (323)
T 3tki_A 160 R-ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE--KKT---YLN-PWK 232 (323)
T ss_dssp E-ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHT--TCT---TST-TGG
T ss_pred c-ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhc--ccc---cCC-ccc
Confidence 1 222345679999999999977665 77899999999999999999999765443221111111 100 000 000
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
. .. ....+++.+||+.||++||++.|++++-
T Consensus 233 ~-------~~--~~~~~li~~~L~~dP~~R~t~~eil~h~ 263 (323)
T 3tki_A 233 K-------ID--SAPLALLHKILVENPSARITIPDIKKDR 263 (323)
T ss_dssp G-------SC--HHHHHHHHHHSCSSTTTSCCHHHHTTCT
T ss_pred c-------CC--HHHHHHHHHHccCChhhCcCHHHHhhCh
Confidence 0 00 1123789999999999999999998763
No 120
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.2e-38 Score=357.60 Aligned_cols=263 Identities=25% Similarity=0.444 Sum_probs=201.8
Q ss_pred hcCCCcccccccccceeEEEEEECC-----ceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQD-----GMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
..+|++.++||+|+||.||+|.++. +..||||++..... ....+.+|++++++++||||+++++++... ...
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~ 121 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY-KPM 121 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-SSE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecC-CCc
Confidence 3578888999999999999997642 35699999975432 235688999999999999999999999875 455
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++|+|.+++.... ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus 122 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 197 (333)
T 1mqb_A 122 MIITEYMENGALDKFLREKD----GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL 197 (333)
T ss_dssp EEEEECCTTEEHHHHHHHTT----TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred EEEEeCCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence 99999999999999997642 34889999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
..............+++.|+|||++.+..++.++||||+||++|||++ |+.||......+....+..... .. ..
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~---~~--~~ 272 (333)
T 1mqb_A 198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFR---LP--TP 272 (333)
T ss_dssp -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCC---CC--CC
T ss_pred ccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCc---CC--Cc
Confidence 433222222233456789999999988899999999999999999999 9999977666555444332211 00 00
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCC
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDM 1120 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~ 1120 (1133)
. .... ...+++.+||+.||++||++.|++++|+.+...++.
T Consensus 273 ~------~~~~------~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 313 (333)
T 1mqb_A 273 M------DCPS------AIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS 313 (333)
T ss_dssp T------TCBH------HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred c------cCCH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchh
Confidence 0 0011 123788999999999999999999999887655443
No 121
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=6.3e-38 Score=361.81 Aligned_cols=269 Identities=17% Similarity=0.208 Sum_probs=202.1
Q ss_pred HhcCCCcccccccccceeEEEEEECC------ceEEEEEEcccCCcC------------HHHHHHHHHHHhhccCCCeee
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQD------GMVLSIRRLRDGTID------------ENTFRKEAEALGKVKHRNLTV 896 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~------g~~vavK~~~~~~~~------------~~~~~~E~~~l~~l~hpniv~ 896 (1133)
..++|++.+.||+|+||.||+|.++. ++.||||++...... ...+.+|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34589999999999999999998864 478999998654311 122334555667778999999
Q ss_pred EEEEEeCC---CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC-
Q 001171 897 LRGYYAGP---PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD- 972 (1133)
Q Consensus 897 l~~~~~~~---~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~- 972 (1133)
+++++... ....++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~----~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA----KRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEES
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEec
Confidence 99998653 23468999999 999999998642 3489999999999999999999999999999999999999
Q ss_pred -CCCceEEeccCcccccccCCCC----CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCC-h
Q 001171 973 -ADFEAHLSEFGLDRLAIATPAE----ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQ-D 1046 (1133)
Q Consensus 973 -~~~~~kl~Dfg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~-~ 1046 (1133)
.++.+||+|||+++........ ........||+.|+|||++.+..++.++|||||||++|||++|+.||.... .
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 8899999999999765432211 112234569999999999999999999999999999999999999997533 3
Q ss_pred hhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1047 EDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
........... ...+.+.+++.+... .... ...+++.+||+.||++||++.+|++.|+.+..
T Consensus 268 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~------~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~ 329 (364)
T 3op5_A 268 PKYVRDSKIRY-RENIASLMDKCFPAA-NAPG------EIAKYMETVKLLDYTEKPLYENLRDILLQGLK 329 (364)
T ss_dssp HHHHHHHHHHH-HHCHHHHHHHHSCTT-CCCH------HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhhHHHHHHHhcccc-cCHH------HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 33333222222 222333333322110 0111 12268889999999999999999999877654
No 122
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-38 Score=360.36 Aligned_cols=245 Identities=20% Similarity=0.287 Sum_probs=196.9
Q ss_pred cCCCcccccccccceeEEEEEE-CCceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|.+.+.||+|+||.||+|.+ .+|+.||+|++... ......+.+|+++++.++||||+++++++.... ..++|
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~-~~~lv 87 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPT-DIVMV 87 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSS-EEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-EEEEE
Confidence 5799999999999999999987 46899999998542 122457899999999999999999999998764 45999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+ +|+|.+++...+ .+++..+..++.||+.|++|||+.||+||||||+||+++.++.+||+|||+++....
T Consensus 88 ~E~~-~g~l~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~- 160 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-----RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD- 160 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT-
T ss_pred EECC-CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccC-
Confidence 9999 789999987643 388999999999999999999999999999999999999999999999999875422
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.......+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||......... ..+....
T Consensus 161 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~-------------~~i~~~~ 224 (336)
T 3h4j_B 161 ---GNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF-------------KKVNSCV 224 (336)
T ss_dssp ---SBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB-------------CCCCSSC
T ss_pred ---CcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH-------------HHHHcCC
Confidence 122345679999999999988776 78999999999999999999999754332211 1111111
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
...+.... ....+++.+|++.||.+|||++|++++
T Consensus 225 ~~~p~~~s-----~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 225 YVMPDFLS-----PGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp CCCCTTSC-----HHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred CCCcccCC-----HHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 11111111 112378999999999999999999875
No 123
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=8.4e-38 Score=353.21 Aligned_cols=264 Identities=22% Similarity=0.316 Sum_probs=207.4
Q ss_pred HhcCCCcccccccccceeEEEEEE------CCceEEEEEEcccCCc--CHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY------QDGMVLSIRRLRDGTI--DENTFRKEAEALGKV-KHRNLTVLRGYYAGPP 905 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~ 905 (1133)
..++|++.+.||+|+||.||+|.+ .+++.||+|++..... ..+.+.+|+++++++ +||||+++++++....
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 346899999999999999999975 3478999999975432 246788999999999 9999999999998765
Q ss_pred CcEEEEEeccCCCCHHHHHHhhccC-------------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC
Q 001171 906 DVRLLVYDYMPNGNLATLLQEASHQ-------------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD 972 (1133)
Q Consensus 906 ~~~~lV~e~~~~gsL~~~l~~~~~~-------------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~ 972 (1133)
. .++||||+++|+|.+++...... ....+++..++.++.||++||+|||++||+||||||+||+++
T Consensus 101 ~-~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~ 179 (313)
T 1t46_A 101 P-TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLT 179 (313)
T ss_dssp S-CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE
T ss_pred C-cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEc
Confidence 4 49999999999999999875421 123489999999999999999999999999999999999999
Q ss_pred CCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHH
Q 001171 973 ADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVK 1051 (1133)
Q Consensus 973 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~ 1051 (1133)
.++.+||+|||+++....... ........|++.|+|||++.+..++.++||||+||++|||++ |+.||..........
T Consensus 180 ~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~ 258 (313)
T 1t46_A 180 HGRITKICDFGLARDIKNDSN-YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 258 (313)
T ss_dssp TTTEEEECCCGGGSCTTSCTT-SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHH
T ss_pred CCCCEEEcccccccccccccc-ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHH
Confidence 999999999999875533221 112234457889999999988889999999999999999999 999997655443332
Q ss_pred HHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1052 WVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
........ ...... .. ....+++.+||+.||.+||++.|++++|++...
T Consensus 259 ~~~~~~~~----~~~~~~------~~------~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 307 (313)
T 1t46_A 259 KMIKEGFR----MLSPEH------AP------AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS 307 (313)
T ss_dssp HHHHHTCC----CCCCTT------SC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHhccCCC----CCCccc------CC------HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence 22221111 000000 00 112378899999999999999999999987543
No 124
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=7.2e-38 Score=349.36 Aligned_cols=258 Identities=21% Similarity=0.331 Sum_probs=198.2
Q ss_pred hcCCCcccccccccceeEEEEEECC-c-------eEEEEEEcccCC-cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQD-G-------MVLSIRRLRDGT-IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~-g-------~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~ 906 (1133)
.++|.+.+.||+|+||.||+|.++. + ..||+|++.... ...+.+.+|++++++++||||+++++++.....
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 4579999999999999999997653 2 579999986433 335778999999999999999999999987654
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc--------eE
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE--------AH 978 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~--------~k 978 (1133)
. ++||||+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++. +|
T Consensus 87 ~-~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~k 161 (289)
T 4fvq_A 87 N-ILVQEFVKFGSLDTYLKKNK----NCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIK 161 (289)
T ss_dssp C-EEEEECCTTCBHHHHHHHTG----GGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEE
T ss_pred C-EEEEECCCCCCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceee
Confidence 4 89999999999999998743 23889999999999999999999999999999999999998887 99
Q ss_pred EeccCcccccccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCC-CCccCChhhHHHHHHHH
Q 001171 979 LSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRK-PVMFTQDEDIVKWVKKQ 1056 (1133)
Q Consensus 979 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~-Pf~~~~~~~~~~~~~~~ 1056 (1133)
++|||+++.... .....|++.|+|||++.+ ..++.++||||+||++|||++|.. ||.............
T Consensus 162 l~Dfg~~~~~~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~-- 232 (289)
T 4fvq_A 162 LSDPGISITVLP-------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYE-- 232 (289)
T ss_dssp ECCCCSCTTTSC-------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH--
T ss_pred eccCcccccccC-------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhh--
Confidence 999999854311 122357889999999977 678999999999999999999554 444433332222211
Q ss_pred hhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCCCC
Q 001171 1057 LQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPSSA 1124 (1133)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~~~ 1124 (1133)
.....+....+. ..+++.+||+.||++||++.|++++|+.+..+...++.+
T Consensus 233 -~~~~~~~~~~~~----------------l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~~~~~~ 283 (289)
T 4fvq_A 233 -DRHQLPAPKAAE----------------LANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLVPRGS 283 (289)
T ss_dssp -TTCCCCCCSSCT----------------THHHHHHHSCSSGGGSCCHHHHHHHHHTCC---------
T ss_pred -ccCCCCCCCCHH----------------HHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCCCCCc
Confidence 111111111111 237888999999999999999999999998866666443
No 125
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=4.2e-38 Score=357.31 Aligned_cols=270 Identities=20% Similarity=0.328 Sum_probs=197.8
Q ss_pred HhcCCCcccccccccceeEEEEEECCc----eEEEEEEcccCC---cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQDG----MVLSIRRLRDGT---IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g----~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
..++|++.+.||+|+||.||+|.+... ..||||++.... ...+.+.+|++++++++||||+++++++......
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 345899999999999999999977542 379999997532 2346789999999999999999999998765322
Q ss_pred -----EEEEEeccCCCCHHHHHHhhccCC-CCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEec
Q 001171 908 -----RLLVYDYMPNGNLATLLQEASHQD-GHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSE 981 (1133)
Q Consensus 908 -----~~lV~e~~~~gsL~~~l~~~~~~~-~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~D 981 (1133)
.++||||+++|+|.+++....... ...+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~D 180 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVAD 180 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECC
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEee
Confidence 389999999999999997654321 22589999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhc
Q 001171 982 FGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRG 1060 (1133)
Q Consensus 982 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~ 1060 (1133)
||+++....... ........+++.|+|||++.+..++.++||||+||++|||++ |+.||......+....+.......
T Consensus 181 fg~a~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~ 259 (323)
T 3qup_A 181 FGLSRKIYSGDY-YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLK 259 (323)
T ss_dssp CCC------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC
T ss_pred cccccccccccc-ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCC
Confidence 999975432221 122233457789999999988889999999999999999999 999998777666555443321110
Q ss_pred cccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCC
Q 001171 1061 QISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPS 1122 (1133)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~ 1122 (1133)
..+. .. ....+++.+||+.||++||++.|+++.|+++...+....
T Consensus 260 -----~~~~------~~------~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~ 304 (323)
T 3qup_A 260 -----QPPE------CM------EEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLS 304 (323)
T ss_dssp -----CCTT------CC------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-----
T ss_pred -----CCCc------cC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcC
Confidence 0000 01 112378999999999999999999999998877665543
No 126
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=7.4e-38 Score=353.81 Aligned_cols=263 Identities=23% Similarity=0.338 Sum_probs=209.6
Q ss_pred HhcCCCcccccccccceeEEEEEE------CCceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY------QDGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~ 906 (1133)
..++|.+.+.||+|+||.||+|.+ .+++.||||++..... ..+.+.+|++++++++||||+++++++.....
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 356899999999999999999976 2458999999975432 23678899999999999999999999987644
Q ss_pred cEEEEEeccCCCCHHHHHHhhccC-------------------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCcc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQ-------------------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQ 967 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~ 967 (1133)
.++||||+++|+|.+++...... ....+++..++.++.||++||+|||++||+||||||+
T Consensus 101 -~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~ 179 (314)
T 2ivs_A 101 -LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAAR 179 (314)
T ss_dssp -CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGG
T ss_pred -eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchh
Confidence 59999999999999999875431 1234788999999999999999999999999999999
Q ss_pred ceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCCh
Q 001171 968 NVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQD 1046 (1133)
Q Consensus 968 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~ 1046 (1133)
||+++.++.+||+|||+++....... ........+++.|+|||++.+..++.++||||+||++|||++ |+.||.....
T Consensus 180 NIli~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 180 NILVAEGRKMKISDFGLSRDVYEEDS-YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GEEEETTTEEEECCCTTCEECTTTSC-EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred eEEEcCCCCEEEcccccccccccccc-ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 99999999999999999875533221 122334567889999999988889999999999999999999 9999987776
Q ss_pred hhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1047 EDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
......+..... ... ... ... ...+++.+||+.||++||++.|++++|+++..
T Consensus 259 ~~~~~~~~~~~~----~~~-~~~------~~~------~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 259 ERLFNLLKTGHR----MER-PDN------CSE------EMYRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp GGHHHHHHTTCC----CCC-CTT------CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCc----CCC-Ccc------CCH------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 665544433211 000 000 011 12378899999999999999999999987644
No 127
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=350.42 Aligned_cols=268 Identities=21% Similarity=0.257 Sum_probs=203.8
Q ss_pred HhcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCC------cCHHHHHHHHHHHhhcc---CCCeeeEEEEEeCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGT------IDENTFRKEAEALGKVK---HRNLTVLRGYYAGP 904 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~------~~~~~~~~E~~~l~~l~---hpniv~l~~~~~~~ 904 (1133)
..++|++.++||+|+||+||+|++ .+|+.||+|++.... .....+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467899999999999999999987 468999999986322 12356788998888875 99999999998764
Q ss_pred CC----cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEe
Q 001171 905 PD----VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLS 980 (1133)
Q Consensus 905 ~~----~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~ 980 (1133)
.. ..++||||++ |+|.+++..... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP---PGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT---TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEe
Confidence 32 3589999996 699999986432 338999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhc
Q 001171 981 EFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRG 1060 (1133)
Q Consensus 981 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 1060 (1133)
|||+++.... ........||+.|+|||++.+..++.++||||+||++|||++|+.||......+....+.+.....
T Consensus 163 Dfg~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~ 238 (308)
T 3g33_A 163 DFGLARIYSY----QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP 238 (308)
T ss_dssp SCSCTTTSTT----CCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred eCccccccCC----CcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence 9999875422 122344578999999999999999999999999999999999999998877776666665543322
Q ss_pred cccccccCC---cCCCCC-CChhHHH----H-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1061 QISELLEPG---LLELDP-ESSEWEE----F-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1061 ~~~~~~~~~---~~~~~~-~~~~~~~----~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
......... ...+.. ....... + ....+++.+|++.||++|||+.|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 111110000 000000 0000000 0 122378999999999999999999864
No 128
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=7.2e-38 Score=351.63 Aligned_cols=263 Identities=21% Similarity=0.310 Sum_probs=198.5
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhh--ccCCCeeeEEEEEeCC---CCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGK--VKHRNLTVLRGYYAGP---PDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~--l~hpniv~l~~~~~~~---~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|++ +|+.||||++... ..+.+.+|.+++.. ++||||+++++++... ....++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l 83 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR--DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG--GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc--cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence 46899999999999999999988 5899999998653 34566677777766 7999999999986432 344689
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHh--------cCCceecccCccceeeCCCCceEEecc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLH--------SLDMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH--------~~~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
||||+++|+|.++++. ..+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+||
T Consensus 84 v~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Df 157 (301)
T 3q4u_A 84 ITHYHEMGSLYDYLQL------TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADL 157 (301)
T ss_dssp EECCCTTCBHHHHHTT------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred ehhhccCCCHHHHHhh------cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeC
Confidence 9999999999999964 24889999999999999999999 999999999999999999999999999
Q ss_pred CcccccccCCCCC-CCCCCCCCCCCccCccccCCC------CCCCCCchhHHHHHHHHHHhC----------CCCCccCC
Q 001171 983 GLDRLAIATPAEA-SSSTTPIGSLGYVSPEAASTG------QPTKEADVYSFGIVLLEILTG----------RKPVMFTQ 1045 (1133)
Q Consensus 983 g~a~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlG~il~el~tg----------~~Pf~~~~ 1045 (1133)
|+++......... .......||+.|+|||++.+. .++.++|||||||++|||++| +.||....
T Consensus 158 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~ 237 (301)
T 3q4u_A 158 GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVV 237 (301)
T ss_dssp TTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred CCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccC
Confidence 9997654332221 123345799999999999776 345689999999999999999 88885432
Q ss_pred h-hhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcC
Q 001171 1046 D-EDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGC 1114 (1133)
Q Consensus 1046 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~ 1114 (1133)
. ......+.+..........+.. ............+++.+||+.||++|||+.||++.|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 238 PNDPSFEDMRKVVCVDQQRPNIPN-------RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CSSCCHHHHHHHHTTSCCCCCCCG-------GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCcchhhhhHHHhccCCCCCCCh-------hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 1 1112222222211111111110 000111112233899999999999999999999999864
No 129
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=350.14 Aligned_cols=256 Identities=25% Similarity=0.390 Sum_probs=196.7
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|+++ ++.||+|++... ...+.+.+|++++++++||||+++++++.+. .++||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~---~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE-SERKAFIVELRQLSRVNHPNIVKLYGACLNP---VCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST-THHHHHHHHHHHHHHCCCTTBCCEEEBCTTT---TEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh-hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC---cEEEEEcC
Confidence 357899999999999999999886 788999998643 2457789999999999999999999987642 48999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhc---CCceecccCccceeeCCCCc-eEEeccCcccccccC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHS---LDMVHGDIKPQNVLFDADFE-AHLSEFGLDRLAIAT 991 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~---~~ivH~Dlkp~NIll~~~~~-~kl~Dfg~a~~~~~~ 991 (1133)
++|+|.+++..... ...+++..+..++.||++||+|||+ +||+||||||+||+++.++. +||+|||+++....
T Consensus 82 ~~~~L~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~- 158 (307)
T 2eva_A 82 EGGSLYNVLHGAEP--LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT- 158 (307)
T ss_dssp TTCBHHHHHHCSSS--EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred CCCCHHHHHhccCC--CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc-
Confidence 99999999986432 1247788899999999999999999 89999999999999998886 79999999864321
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
......||+.|+|||++.+..++.++|||||||++|||++|+.||......... .... ........... .
T Consensus 159 -----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~-~~~~-~~~~~~~~~~~-~-- 228 (307)
T 2eva_A 159 -----HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR-IMWA-VHNGTRPPLIK-N-- 228 (307)
T ss_dssp -----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHH-HHHH-HHTTCCCCCBT-T--
T ss_pred -----ccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHH-HHHH-HhcCCCCCccc-c--
Confidence 122346899999999999989999999999999999999999999754332211 1111 11111111110 0
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
... ...+++.+||+.||++||++.|++++|+.+.....
T Consensus 229 ----~~~------~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 266 (307)
T 2eva_A 229 ----LPK------PIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP 266 (307)
T ss_dssp ----CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCC
T ss_pred ----cCH------HHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhcc
Confidence 011 12378899999999999999999999988765443
No 130
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=2e-37 Score=353.56 Aligned_cols=252 Identities=19% Similarity=0.341 Sum_probs=197.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC----HHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID----ENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~----~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.++||+|+||.||+|+++ +++.||+|++.+.... .+.+.+|.++++++ +||||+++++++... ...+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~-~~~~ 86 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-SRLF 86 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeC-CEEE
Confidence 357999999999999999999876 5899999999754322 34578899999988 899999999999876 4569
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.+++...+ .+++..++.++.||+.||+|||++||+||||||+||+++.++++||+|||+++...
T Consensus 87 lv~e~~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~ 161 (345)
T 3a8x_A 87 FVIEYVNGGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 161 (345)
T ss_dssp EEECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSC
T ss_pred EEEeCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEecccccccc
Confidence 9999999999999998653 38899999999999999999999999999999999999999999999999987432
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChh-----hHHHHHHHHhhhccccc
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE-----DIVKWVKKQLQRGQISE 1064 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~-----~~~~~~~~~~~~~~~~~ 1064 (1133)
.. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.+.......
T Consensus 162 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~-- 236 (345)
T 3a8x_A 162 RP---GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-- 236 (345)
T ss_dssp CT---TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC--
T ss_pred CC---CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC--
Confidence 21 12334568999999999999999999999999999999999999999642111 111112222211111
Q ss_pred cccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCH------HHHHHH
Q 001171 1065 LLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSM------ADIVFM 1110 (1133)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~------~evl~~ 1110 (1133)
.++.... ....+++.+||+.||++||++ .|++++
T Consensus 237 -------~~p~~~s-----~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h 276 (345)
T 3a8x_A 237 -------RIPRSLS-----VKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 276 (345)
T ss_dssp -------CCCTTSC-----HHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred -------CCCCCCC-----HHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence 0111100 112378899999999999995 677643
No 131
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.4e-38 Score=359.18 Aligned_cols=267 Identities=20% Similarity=0.292 Sum_probs=205.4
Q ss_pred HhcCCCcccccccccceeEEEEEE------CCceEEEEEEcccCC--cCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY------QDGMVLSIRRLRDGT--IDENTFRKEAEALGKV-KHRNLTVLRGYYAGPP 905 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~ 905 (1133)
..++|++.+.||+|+||.||+|.+ ..+..||+|++.... ...+.+.+|+++++++ +||||+++++++....
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 457899999999999999999986 246789999997432 2346789999999999 8999999999998764
Q ss_pred CcEEEEEeccCCCCHHHHHHhhccC------------------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCcc
Q 001171 906 DVRLLVYDYMPNGNLATLLQEASHQ------------------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQ 967 (1133)
Q Consensus 906 ~~~~lV~e~~~~gsL~~~l~~~~~~------------------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~ 967 (1133)
. .++||||+++|+|.+++...... ....+++..++.++.||+.||+|||++||+||||||+
T Consensus 123 ~-~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~ 201 (344)
T 1rjb_A 123 P-IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAAR 201 (344)
T ss_dssp S-CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGG
T ss_pred c-cEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChh
Confidence 4 59999999999999999864321 0123789999999999999999999999999999999
Q ss_pred ceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCCh
Q 001171 968 NVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQD 1046 (1133)
Q Consensus 968 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~ 1046 (1133)
||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus 202 NIll~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 280 (344)
T 1rjb_A 202 NVLVTHGKVVKICDFGLARDIMSDSN-YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV 280 (344)
T ss_dssp GEEEETTTEEEECCCGGGSCGGGCTT-SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred hEEEcCCCcEEeCCCccCcccccCcc-ceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc
Confidence 99999999999999999975533221 112234457889999999988889999999999999999998 9999976554
Q ss_pred hhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1047 EDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
............... ... .... ...+++.+||+.||.+||++.|++++|+.+.....
T Consensus 281 ~~~~~~~~~~~~~~~----~~~------~~~~------~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~ 337 (344)
T 1rjb_A 281 DANFYKLIQNGFKMD----QPF------YATE------EIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAE 337 (344)
T ss_dssp SHHHHHHHHTTCCCC----CCT------TCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCCCCC----CCC------CCCH------HHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHH
Confidence 433322222110100 000 0011 12368899999999999999999999998766543
No 132
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=6.6e-38 Score=348.07 Aligned_cols=255 Identities=22% Similarity=0.356 Sum_probs=195.4
Q ss_pred hcCCCcccccccccceeEEEEEECC----ceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQD----GMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.+.||+|+||.||+|.+.. +..||+|++..... ..+.+.+|++++++++||||+++++++.+ +..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~ 91 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--NPVW 91 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS--SSCE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc--CccE
Confidence 4589999999999999999997743 56799999865332 24578899999999999999999999854 3458
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.+++.... ..+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++...
T Consensus 92 lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQVRK----YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 167 (281)
T ss_dssp EEEECCTTEEHHHHHHHTT----TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred EEEecCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccC
Confidence 9999999999999998643 248899999999999999999999999999999999999999999999999997553
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
... ........+++.|+|||++.+..++.++||||+||++|||++ |..||......+....+..... .. ..+
T Consensus 168 ~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~----~~-~~~ 240 (281)
T 1mp8_A 168 DST--YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGER----LP-MPP 240 (281)
T ss_dssp -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCC----CC-CCT
T ss_pred ccc--ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCC----CC-CCC
Confidence 221 112233457789999999988889999999999999999997 9999987766665554433210 00 000
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
. ... ...+++.+||+.||++||++.|++++|+.+.
T Consensus 241 ~------~~~------~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 275 (281)
T 1mp8_A 241 N------CPP------TLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 275 (281)
T ss_dssp T------CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred C------CCH------HHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 0 011 1227889999999999999999999998754
No 133
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=7e-38 Score=349.29 Aligned_cols=259 Identities=22% Similarity=0.393 Sum_probs=212.3
Q ss_pred HhcCCCcccccccccceeEEEEEECC-ceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQD-GMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
..++|++.+.||+|+||.||+|.++. +..||+|++.......+.+.+|++++++++||||+++++++.... ..++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-PFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-SEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-CEEEEEE
Confidence 45689999999999999999998864 889999999876666788999999999999999999999998764 4599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 993 (1133)
|+++++|.+++..... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.++|+|||+++......
T Consensus 90 ~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT- 165 (288)
T ss_dssp CCTTEEHHHHHHHCCT---TTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-
T ss_pred cCCCCcHHHHHHhccc---CCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc-
Confidence 9999999999986432 348999999999999999999999999999999999999999999999999987543221
Q ss_pred CCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCC
Q 001171 994 EASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLE 1072 (1133)
Q Consensus 994 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1133)
........+++.|+|||++.+..++.++||||+|+++|+|++ |..||...+.......+....... ....
T Consensus 166 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~-----~~~~--- 236 (288)
T 3kfa_A 166 -YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME-----RPEG--- 236 (288)
T ss_dssp -SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCC-----CCTT---
T ss_pred -cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCC-----CCCC---
Confidence 122233457788999999988889999999999999999999 999998776666555443321110 0000
Q ss_pred CCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1073 LDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1073 ~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
.. ....+++.+|++.||++||++.|+++.|+.+..
T Consensus 237 ---~~------~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 237 ---CP------EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp ---CC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CC------HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 01 112378889999999999999999999987543
No 134
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=3.4e-37 Score=343.81 Aligned_cols=260 Identities=22% Similarity=0.373 Sum_probs=192.8
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|++.++||+|+||.||+|+++. .||+|++...... .+.+.+|++++++++||||+++++++... ..++||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~lv~ 98 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP--QLAIVT 98 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--SCEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCC--ccEEEE
Confidence 4689999999999999999998753 4899998654433 35788999999999999999999976543 358999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++++|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++......
T Consensus 99 e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 174 (289)
T 3og7_A 99 QWCEGSSLYHHLHASE----TKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS 174 (289)
T ss_dssp ECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred EecCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccccc
Confidence 9999999999996532 348999999999999999999999999999999999999999999999999986543211
Q ss_pred CCCCCCCCCCCCCCccCccccC---CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 993 AEASSSTTPIGSLGYVSPEAAS---TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
. ........||+.|+|||++. +..++.++||||+||++|||++|+.||......+....... .........
T Consensus 175 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~---~~~~~~~~~-- 248 (289)
T 3og7_A 175 G-SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG---RGSLSPDLS-- 248 (289)
T ss_dssp ----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHH---HTSCCCCTT--
T ss_pred c-cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhc---ccccCcchh--
Confidence 1 22233457999999999986 56678899999999999999999999976544332222222 111111111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
...... . ....+++.+||+.||++||++.|+++.|+++..
T Consensus 249 --~~~~~~---~--~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 249 --KVRSNC---P--KRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp --SSCTTS---C--HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred --hccccC---C--HHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 110010 0 112378889999999999999999999998764
No 135
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=358.09 Aligned_cols=247 Identities=19% Similarity=0.307 Sum_probs=194.0
Q ss_pred CcccccccccceeEEEEEEC-CceEEEEEEcccCC-cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEeccCC
Q 001171 840 DEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT-IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPN 917 (1133)
Q Consensus 840 ~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~~~ 917 (1133)
...++||+|+||.||+|... +|+.||+|++.... ...+.+.+|++++++++||||+++++++... ...++||||+++
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~~lv~E~~~~ 170 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESK-NDIVLVMEYVDG 170 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCTT
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-CEEEEEEeCCCC
Confidence 33678999999999999875 68999999997543 2356789999999999999999999999876 455999999999
Q ss_pred CCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee--CCCCceEEeccCcccccccCCCCC
Q 001171 918 GNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF--DADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 918 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll--~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
|+|.+++.... ..+++..+..++.||++||+|||+.||+||||||+||++ +.++.+||+|||+++.....
T Consensus 171 ~~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~---- 242 (373)
T 2x4f_A 171 GELFDRIIDES----YNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR---- 242 (373)
T ss_dssp CEEHHHHHHTG----GGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT----
T ss_pred CcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc----
Confidence 99999987643 238899999999999999999999999999999999999 66789999999999765322
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDP 1075 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1133)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||......+....+..... .+ ....+...
T Consensus 243 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~--~~---~~~~~~~~-- 315 (373)
T 2x4f_A 243 EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRW--DL---EDEEFQDI-- 315 (373)
T ss_dssp CBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCC--CS---CSGGGTTS--
T ss_pred cccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccC--CC---ChhhhccC--
Confidence 223345799999999999888899999999999999999999999987766655544433211 00 00001000
Q ss_pred CChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1076 ESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1076 ~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
. ....+++.+|++.||++||++.|+++
T Consensus 316 -~------~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 316 -S------EEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp -C------HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -C------HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0 11237899999999999999999996
No 136
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=3.9e-37 Score=343.93 Aligned_cols=263 Identities=21% Similarity=0.320 Sum_probs=198.3
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
++|++.+.||+|+||+||+|.++ +|+.||+|++...... .+.+.+|++++++++||||+++++++... ...++||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~ 80 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD-KKLTLVF 80 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC-CEEEEEE
Confidence 57999999999999999999875 5899999999754332 36788999999999999999999999876 4559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++ ++.+.+.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 81 e~~~~-~l~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~- 154 (292)
T 3o0g_A 81 EFCDQ-DLKKYFDSCN----GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP- 154 (292)
T ss_dssp ECCSE-EHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSC-
T ss_pred ecCCC-CHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCc-
Confidence 99965 6666665432 34899999999999999999999999999999999999999999999999999754221
Q ss_pred CCCCCCCCCCCCCCccCccccCCCC-CCCCCchhHHHHHHHHHHhCCCCC-ccCChhhHHHHHHHHhhhcccccccc---
Q 001171 993 AEASSSTTPIGSLGYVSPEAASTGQ-PTKEADVYSFGIVLLEILTGRKPV-MFTQDEDIVKWVKKQLQRGQISELLE--- 1067 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlG~il~el~tg~~Pf-~~~~~~~~~~~~~~~~~~~~~~~~~~--- 1067 (1133)
........||+.|+|||++.+.. ++.++||||+||++|||++|+.|| ...+..+....+.+............
T Consensus 155 --~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 232 (292)
T 3o0g_A 155 --VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTK 232 (292)
T ss_dssp --CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGG
T ss_pred --cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcc
Confidence 22334457899999999997765 799999999999999999988885 44444444444444332211110000
Q ss_pred -CCcCCC---------CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1068 -PGLLEL---------DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1068 -~~~~~~---------~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+..... ........ ....+++.+|++.||++|||++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 233 LPDYKPYPMYPATTSLVNVVPKLN--ATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp STTCCCCCCCCTTCCCTTTSTTCC--HHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred cccccccccccCCcchhhcccccC--hHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 000000 00000001 112378999999999999999999864
No 137
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-37 Score=360.24 Aligned_cols=252 Identities=17% Similarity=0.249 Sum_probs=202.4
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
.++|++.+.||+|+||.||+|..+ +|+.||+|++..... +...+.+|++++++++||||+++++++... ...++|||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-~~~~lv~E 128 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK-YEMVLILE 128 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS-SEEEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeC-CEEEEEEE
Confidence 457999999999999999999875 689999999865432 345788999999999999999999999876 45599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC--CCceEEeccCcccccccC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA--DFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~ 991 (1133)
|+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++. ++.+||+|||+++.....
T Consensus 129 ~~~gg~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~ 204 (387)
T 1kob_A 129 FLSGGELFDRIAAED----YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD 204 (387)
T ss_dssp CCCCCBHHHHTTCTT----CCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred cCCCCcHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCC
Confidence 999999999987532 34889999999999999999999999999999999999974 577999999999754321
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+....+..... .+. .....
T Consensus 205 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~--~~~---~~~~~ 275 (387)
T 1kob_A 205 ----EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW--EFD---EDAFS 275 (387)
T ss_dssp ----SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCC--CCC---SSTTT
T ss_pred ----cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC--CCC---ccccc
Confidence 122334699999999999998899999999999999999999999987666555544433210 000 00000
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
. .. ....+++.+||+.||++||++.|++++
T Consensus 276 ~---~s------~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 276 S---VS------PEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp T---SC------HHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred c---CC------HHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 0 00 112378999999999999999999975
No 138
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=366.56 Aligned_cols=296 Identities=23% Similarity=0.247 Sum_probs=142.0
Q ss_pred cEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccC
Q 001171 293 RIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVAN 372 (1133)
Q Consensus 293 ~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 372 (1133)
+.++++++.++.+.. .....+++|+|++|+|+++.+..|.++++|++|+|++|.|++..|..|+++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE----GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCS----CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCC----CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 345555555544321 1123455555555555555555555555555555555555555555555555555555555
Q ss_pred CcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCC
Q 001171 373 NSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIP 452 (1133)
Q Consensus 373 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~ 452 (1133)
|+++...+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|.+++..+..|.++++|++|++++|++++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 55554444445555555555555555555555555555555555555555555555555555555555555555554444
Q ss_pred hhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCC
Q 001171 453 EEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPS 532 (1133)
Q Consensus 453 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 532 (1133)
..|.++++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+.+|..+....+|++|++++|+++...+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 44555555555555555555444444444444555554444444444433333334444444444444322233444444
Q ss_pred CcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccC
Q 001171 533 LQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQIS 592 (1133)
Q Consensus 533 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1133)
|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|+|+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 444444444444333333444444444444444443333333333333333333333333
No 139
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.4e-37 Score=357.60 Aligned_cols=244 Identities=25% Similarity=0.386 Sum_probs=191.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc----CHHHHHHHHHH-HhhccCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI----DENTFRKEAEA-LGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----~~~~~~~E~~~-l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.++||+|+||.||+|+++ +++.||||++.+... ....+.+|..+ ++.++||||+++++++... +..|
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~-~~~~ 115 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA-DKLY 115 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECS-SEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeC-CEEE
Confidence 457999999999999999999886 588999999965432 23456667776 5778999999999999876 4559
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.+++.+.+ .+++..+..++.||+.||+|||++||+||||||+||+++.++++||+|||+++...
T Consensus 116 lv~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~ 190 (373)
T 2r5t_A 116 FVLDYINGGELFYHLQRER-----CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENI 190 (373)
T ss_dssp EEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGB
T ss_pred EEEeCCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccc
Confidence 9999999999999998753 37888999999999999999999999999999999999999999999999997532
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+....+... ...+ .+.
T Consensus 191 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~--~~~~----~~~ 261 (373)
T 2r5t_A 191 EH---NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNK--PLQL----KPN 261 (373)
T ss_dssp CC---CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHS--CCCC----CSS
T ss_pred cC---CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhc--ccCC----CCC
Confidence 22 22344568999999999999999999999999999999999999999877666655554432 1011 111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMAD 1106 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~e 1106 (1133)
+ .. ...+++.+|++.||.+||++.+
T Consensus 262 ~------~~------~~~~li~~lL~~dp~~R~~~~~ 286 (373)
T 2r5t_A 262 I------TN------SARHLLEGLLQKDRTKRLGAKD 286 (373)
T ss_dssp S------CH------HHHHHHHHHTCSSGGGSTTTTT
T ss_pred C------CH------HHHHHHHHHcccCHHhCCCCCC
Confidence 1 01 1237889999999999999853
No 140
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=6.6e-38 Score=354.57 Aligned_cols=268 Identities=22% Similarity=0.341 Sum_probs=209.5
Q ss_pred HHHHHhcCCCcccccccccceeEEEEEE------CCceEEEEEEcccCCcC--HHHHHHHHHHHhhc-cCCCeeeEEEEE
Q 001171 831 ETLEATRQFDEENVLSRGRYGLIFKASY------QDGMVLSIRRLRDGTID--ENTFRKEAEALGKV-KHRNLTVLRGYY 901 (1133)
Q Consensus 831 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l-~hpniv~l~~~~ 901 (1133)
......++|++.+.||+|+||.||+|++ .+++.||||++...... .+.+.+|+++++++ +||||+++++++
T Consensus 21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 100 (316)
T 2xir_A 21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 100 (316)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEE
Confidence 3344567899999999999999999974 34789999999754332 35788999999999 799999999999
Q ss_pred eCCCCcEEEEEeccCCCCHHHHHHhhccCC-----------CCCCChHHHHHHHHHHHHHHHHHhcCCceecccCcccee
Q 001171 902 AGPPDVRLLVYDYMPNGNLATLLQEASHQD-----------GHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVL 970 (1133)
Q Consensus 902 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIl 970 (1133)
.......++||||+++|+|.+++....... ...+++..+..++.||++||+|||+.||+||||||+||+
T Consensus 101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil 180 (316)
T 2xir_A 101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL 180 (316)
T ss_dssp CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEE
Confidence 876666699999999999999998643210 123788999999999999999999999999999999999
Q ss_pred eCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhh-
Q 001171 971 FDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDED- 1048 (1133)
Q Consensus 971 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~- 1048 (1133)
++.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||+||++|||++ |+.||.......
T Consensus 181 ~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~ 259 (316)
T 2xir_A 181 LSEKNVVKICDFGLARDIYKDPD-YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 259 (316)
T ss_dssp ECGGGCEEECCCGGGSCTTTCTT-SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH
T ss_pred ECCCCCEEECCCccccccccCcc-ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH
Confidence 99999999999999975432211 122234567889999999988889999999999999999998 999997654333
Q ss_pred HHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1049 IVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
....+... .....+.. ... ...+++.+||+.||.+||++.|++++|+.+..
T Consensus 260 ~~~~~~~~-~~~~~~~~----------~~~------~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 310 (316)
T 2xir_A 260 FCRRLKEG-TRMRAPDY----------TTP------EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 310 (316)
T ss_dssp HHHHHHHT-CCCCCCTT----------CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHhccC-ccCCCCCC----------CCH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 22222221 11100000 011 12378889999999999999999999987654
No 141
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.1e-37 Score=347.51 Aligned_cols=267 Identities=20% Similarity=0.279 Sum_probs=197.0
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC----HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID----ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
..++|++.+.||+|+||.||+|.+. +++.||+|++...... .+.+.+|++++++++||||+++++++... ...+
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-~~~~ 110 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEID-GQLY 110 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeC-CeEE
Confidence 3568999999999999999999875 6899999998654322 36788999999999999999999999875 4559
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++++|.+++.... .+++..+..++.|+++||+|||+.||+||||||+||+++.++.+||+|||+++...
T Consensus 111 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 185 (309)
T 2h34_A 111 VDMRLINGVDLAAMLRRQG-----PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATT 185 (309)
T ss_dssp EEEECCCCEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred EEEEecCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence 9999999999999998753 38899999999999999999999999999999999999999999999999986543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
... ........|++.|+|||++.+..++.++||||+|+++|||++|+.||...........+.. .........+.
T Consensus 186 ~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~---~~~~~~~~~~~ 260 (309)
T 2h34_A 186 DEK--LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQ---AIPRPSTVRPG 260 (309)
T ss_dssp -------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHS---CCCCGGGTSTT
T ss_pred ccc--cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhcc---CCCCccccCCC
Confidence 221 1223345689999999999998999999999999999999999999976544322222211 11001111111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCC-CHHHHHHHHhcCcCCCCCCCCC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-SMADIVFMLEGCRVGPDMPSSA 1124 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-s~~evl~~Le~~~~~~~~~~~~ 1124 (1133)
+ .. ...+++.+||+.||++|| +++++++.|+......+.....
T Consensus 261 ~------~~------~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~~~~~ 304 (309)
T 2h34_A 261 I------PV------AFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQDRAT 304 (309)
T ss_dssp C------CT------HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--------
T ss_pred C------CH------HHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcccchh
Confidence 1 01 122688899999999999 9999999999987777655443
No 142
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=353.77 Aligned_cols=251 Identities=21% Similarity=0.333 Sum_probs=186.5
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
..++|++.+.||+|+||.||+|+++ +++.||||++.... ..+.+.+|++++++++||||+++++++... ...++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRLSHPNIIKLKEIFETP-TEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHCCCTTBCCEEEEEECS-SEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhCCCCCCcceeeeEecC-CeEEEEEE
Confidence 3567999999999999999999886 57899999997543 456788999999999999999999999876 45599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC---CCceEEeccCccccccc
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA---DFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~a~~~~~ 990 (1133)
|+++|+|.+++... ..+++..+..++.||+.||+|||+.||+||||||+||+++. ++.+||+|||+++....
T Consensus 129 ~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~ 203 (349)
T 2w4o_A 129 LVTGGELFDRIVEK-----GYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH 203 (349)
T ss_dssp CCCSCBHHHHHTTC-----SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred eCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence 99999999999753 33889999999999999999999999999999999999975 88999999999875422
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhh-HHHHHHHHhhhccccccccCC
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDED-IVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
. .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....+. .... ....+.
T Consensus 204 ~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~----~~~~-~~~~~~ 274 (349)
T 2w4o_A 204 Q----VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRIL----NCEY-YFISPW 274 (349)
T ss_dssp -------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHH----TTCC-CCCTTT
T ss_pred c----cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH----hCCC-ccCCch
Confidence 1 12234579999999999999899999999999999999999999997554433 222221 1111 011111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... . ....+++.+|++.||++||++.|++++
T Consensus 275 ~~~~---~------~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 275 WDEV---S------LNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp TTTS---C------HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred hhhC---C------HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 1100 0 112378999999999999999999975
No 143
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=1.9e-37 Score=361.31 Aligned_cols=209 Identities=19% Similarity=0.268 Sum_probs=177.1
Q ss_pred hcCCCcccccccc--cceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRG--RYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G--~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.++||+| +||.||+|+++ +|+.||||++...... .+.+.+|++++++++|||||++++++.... ..+
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~ 102 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN-ELW 102 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-EEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC-EEE
Confidence 4579999999999 99999999886 6999999999754433 356788999999999999999999998764 459
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.+++..... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFM---DGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCT---TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcc---cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 99999999999999987432 338999999999999999999999999999999999999999999999999886443
Q ss_pred cCCC----CCCCCCCCCCCCCccCccccCC--CCCCCCCchhHHHHHHHHHHhCCCCCccCChhh
Q 001171 990 ATPA----EASSSTTPIGSLGYVSPEAAST--GQPTKEADVYSFGIVLLEILTGRKPVMFTQDED 1048 (1133)
Q Consensus 990 ~~~~----~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~ 1048 (1133)
.... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...+...
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 244 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ 244 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTT
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 2211 1112234578999999999987 578999999999999999999999997655443
No 144
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=3.4e-37 Score=345.54 Aligned_cols=263 Identities=15% Similarity=0.174 Sum_probs=207.9
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
.++|++.+.||+|+||.||+|.+ .+|+.||||++.... ..+.+.+|+++++++ +|+|++++++++... ...++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~-~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEG-LHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTCTTCCCEEEEEEET-TEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-ccHHHHHHHHHHHHHhcCCCCCeEEeecCCC-ceeEEEEE
Confidence 45799999999999999999986 569999999986533 345688999999999 799999999998765 45599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc-----eEEeccCccccc
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE-----AHLSEFGLDRLA 988 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~-----~kl~Dfg~a~~~ 988 (1133)
|+ +++|.+++...+ ..+++..+..++.||+.||+|||++||+||||||+||+++.++. +||+|||+++..
T Consensus 87 ~~-~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~ 161 (298)
T 1csn_A 87 LL-GPSLEDLLDLCG----RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY 161 (298)
T ss_dssp CC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred ec-CCCHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence 99 999999998643 34899999999999999999999999999999999999988776 999999999765
Q ss_pred ccCCCCC----CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChh---hHHHHHHHHhhhcc
Q 001171 989 IATPAEA----SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE---DIVKWVKKQLQRGQ 1061 (1133)
Q Consensus 989 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~---~~~~~~~~~~~~~~ 1061 (1133)
....... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+........
T Consensus 162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 241 (298)
T 1csn_A 162 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTP 241 (298)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCcc
Confidence 4332211 1234567999999999999999999999999999999999999999764332 22233322222211
Q ss_pred ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1062 ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
..+.. +.+ . ....+++.+||+.||++||++++|++.|+++....
T Consensus 242 ~~~~~-~~~------~------~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~ 285 (298)
T 1csn_A 242 LRELC-AGF------P------EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL 285 (298)
T ss_dssp HHHHT-TTS------C------HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHH-hhC------c------HHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhc
Confidence 11111 111 0 01227889999999999999999999998876543
No 145
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=3.2e-37 Score=365.81 Aligned_cols=263 Identities=19% Similarity=0.215 Sum_probs=198.3
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---CHHHHHHHHHHHhhccCCCeeeEEEEEeCCC-----C
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---DENTFRKEAEALGKVKHRNLTVLRGYYAGPP-----D 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-----~ 906 (1133)
.++|++.++||+|+||+||+|.+. +|+.||||++..... ..+.+.+|++++++++||||+++++++.... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999775 689999999975322 2457889999999999999999999996543 3
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
..++||||+++ ++.+.+.. .+++..+..++.||++||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~-------~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~ 212 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM-------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 212 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred eEEEEEeCCCC-CHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence 45899999965 56666642 27899999999999999999999999999999999999999999999999997
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc---
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS--- 1063 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~--- 1063 (1133)
.... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+....+.+........
T Consensus 213 ~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~ 288 (464)
T 3ttj_A 213 TAGT----SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK 288 (464)
T ss_dssp --------CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred ecCC----CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 5422 122345689999999999999999999999999999999999999998777666555554433221000
Q ss_pred -------ccccCC--cCC-----------CCCCChhHHH-HHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1064 -------ELLEPG--LLE-----------LDPESSEWEE-FLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1064 -------~~~~~~--~~~-----------~~~~~~~~~~-~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+... ... +......... -....+++.+|++.||++|||++|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 000000 000 0001111111 1223489999999999999999999975
No 146
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.7e-37 Score=342.02 Aligned_cols=245 Identities=19% Similarity=0.295 Sum_probs=180.1
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc----CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI----DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|++.+.||+|+||.||+|.+. +|+.||+|++..... ..+.+.+|++++++++||||+++++++.... ..++|
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~lv 91 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD-EIIMV 91 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-CEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC-eEEEE
Confidence 57999999999999999999764 689999999865322 2467889999999999999999999998764 45999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+ ++++.+++... ..+++..+..++.|++.|++|||+.||+||||||+||+++.++.+||+|||+++.....
T Consensus 92 ~e~~-~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 92 IEYA-GNELFDYIVQR-----DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp EECC-CEEHHHHHHTS-----SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCSSCC------
T ss_pred ehhc-CCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCCeeccCChHhEEECCCCCEEEeecccceeccCc
Confidence 9999 77888888753 23889999999999999999999999999999999999999999999999998654221
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.......||+.|+|||++.+..+ +.++||||+||++|||++|+.||...........+.... ..++...
T Consensus 166 ----~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~--~~~~~~~---- 235 (275)
T 2eue_A 166 ----NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV--YTLPKFL---- 235 (275)
T ss_dssp -------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC--CCCCTTS----
T ss_pred ----ccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC--CCCCccC----
Confidence 12234568999999999987765 789999999999999999999998766555544443321 1111100
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. ...+++.+|++.||++|||+.|++++
T Consensus 236 ------~~------~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 236 ------SP------GAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp ------CH------HHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred ------CH------HHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 01 12378999999999999999999864
No 147
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=4.6e-37 Score=348.26 Aligned_cols=251 Identities=18% Similarity=0.287 Sum_probs=203.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-------CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-------DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
.++|++.+.||+|+||.||+|.+. +|+.||+|++..... ..+.+.+|++++++++||||+++++++... ..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~ 89 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENR-TD 89 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecC-CE
Confidence 457999999999999999999876 589999999864332 356799999999999999999999999876 45
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC----ceEEeccC
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF----EAHLSEFG 983 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~----~~kl~Dfg 983 (1133)
.++||||+++++|.+++... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++ .+||+|||
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQK-----ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEEEECCCCSCBHHHHHHTC-----SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 59999999999999999753 3478999999999999999999999999999999999999887 79999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc
Q 001171 984 LDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 984 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~ 1063 (1133)
+++..... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||......+....+..... ...
T Consensus 165 ~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~--~~~ 238 (321)
T 2a2a_A 165 LAHEIEDG----VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSY--DFD 238 (321)
T ss_dssp TCEECCTT----CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCC--CCC
T ss_pred cceecCcc----ccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhccc--ccC
Confidence 98754321 223345799999999999988999999999999999999999999977665554444332110 000
Q ss_pred ccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1064 ELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
....... . ....+++.+|++.||++||++.|++++
T Consensus 239 ~~~~~~~------~------~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 239 EEFFSHT------S------ELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp HHHHTTC------C------HHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred hhhhccc------C------HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 0000000 0 112378999999999999999999874
No 148
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=5.4e-37 Score=340.02 Aligned_cols=251 Identities=21% Similarity=0.292 Sum_probs=201.9
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC-CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG-TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
..++|++.+.||+|+||.||+|.++ ++..||+|++... ....+.+.+|++++++++||||+++++++... ...++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~ 85 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN-TDIYLVM 85 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeEEEEE
Confidence 3457999999999999999999876 4788999998653 33467899999999999999999999999876 4459999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee---CCCCceEEeccCcccccc
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---DADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~ 989 (1133)
||+++++|.+++.... .+++..+..++.|++.|++|||++||+||||||+||++ +.++.++|+|||++....
T Consensus 86 e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 86 ELCTGGELFERVVHKR-----VFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp ECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred eccCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 9999999999998643 38899999999999999999999999999999999999 788999999999986543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. .......||+.|+|||++.+ .++.++||||+|+++|||++|+.||......+....+.+... ..+. ..
T Consensus 161 ~~----~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~--~~~~---~~ 230 (277)
T 3f3z_A 161 PG----KMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTF--TFPE---KD 230 (277)
T ss_dssp TT----SCBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC--CCCH---HH
T ss_pred Cc----cchhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCC--CCCc---hh
Confidence 22 22334579999999999865 489999999999999999999999987666655544433211 0000 00
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... . ....+++.+|++.||++||++.|++++
T Consensus 231 ~~~~---~------~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 231 WLNV---S------PQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp HTTS---C------HHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred hhcC---C------HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000 0 112378899999999999999999863
No 149
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=2.7e-37 Score=342.75 Aligned_cols=247 Identities=23% Similarity=0.390 Sum_probs=199.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++... ...++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~l 86 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA-TRVYL 86 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecC-CEEEE
Confidence 468999999999999999999775 57899999985422 2246788999999999999999999999876 44599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++|+|.+++.... .+++..+..++.||+.|++|||+.||+||||||+||+++.++.++|+|||++.....
T Consensus 87 v~e~~~~~~l~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLS-----KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp EECCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EEecCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 999999999999998753 388999999999999999999999999999999999999999999999998854321
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.......|++.|+|||++.+..++.++||||+|+++|+|++|+.||......+....+... ...++..
T Consensus 162 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--~~~~~~~----- 229 (279)
T 3fdn_A 162 -----SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV--EFTFPDF----- 229 (279)
T ss_dssp -----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHT--CCCCCTT-----
T ss_pred -----ccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhC--CCCCCCc-----
Confidence 2223457899999999999989999999999999999999999999876655554444331 1111110
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
... ...+++.+||+.||++||++.|++++-
T Consensus 230 -----~~~------~~~~li~~~l~~~p~~Rps~~e~l~h~ 259 (279)
T 3fdn_A 230 -----VTE------GARDLISRLLKHNPSQRPMLREVLEHP 259 (279)
T ss_dssp -----SCH------HHHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred -----CCH------HHHHHHHHHhccChhhCCCHHHHhhCc
Confidence 001 122788999999999999999999763
No 150
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=2.2e-37 Score=353.03 Aligned_cols=263 Identities=22% Similarity=0.315 Sum_probs=208.7
Q ss_pred hcCCCcccccccccceeEEEEEEC--------CceEEEEEEcccCCc--CHHHHHHHHHHHhhc-cCCCeeeEEEEEeCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ--------DGMVLSIRRLRDGTI--DENTFRKEAEALGKV-KHRNLTVLRGYYAGP 904 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~ 904 (1133)
.++|++.+.||+|+||.||+|++. ++..||||++..... ..+.+.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 468999999999999999999863 467899999975432 235788999999999 899999999999876
Q ss_pred CCcEEEEEeccCCCCHHHHHHhhccC-----------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC
Q 001171 905 PDVRLLVYDYMPNGNLATLLQEASHQ-----------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA 973 (1133)
Q Consensus 905 ~~~~~lV~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~ 973 (1133)
. ..++||||+++|+|.+++...... ....+++..++.++.||++||+|||+.||+||||||+||+++.
T Consensus 114 ~-~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~ 192 (334)
T 2pvf_A 114 G-PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTE 192 (334)
T ss_dssp S-CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT
T ss_pred C-ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcC
Confidence 4 459999999999999999875421 1234889999999999999999999999999999999999999
Q ss_pred CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHH
Q 001171 974 DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKW 1052 (1133)
Q Consensus 974 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~ 1052 (1133)
++.+||+|||+++....... ........+++.|+|||++.+..++.++||||+||++|||++ |+.||......+....
T Consensus 193 ~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~ 271 (334)
T 2pvf_A 193 NNVMKIADFGLARDINNIDY-YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL 271 (334)
T ss_dssp TCCEEECCCTTCEECTTTSS-EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHH
T ss_pred CCCEEEcccccccccccccc-ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHH
Confidence 99999999999975432211 122334467889999999988889999999999999999999 9999987766665554
Q ss_pred HHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1053 VKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
+...... .. .. .... ...+++.+||+.||.+||++.|++++|+++...
T Consensus 272 ~~~~~~~----~~-~~------~~~~------~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~ 319 (334)
T 2pvf_A 272 LKEGHRM----DK-PA------NCTN------ELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 319 (334)
T ss_dssp HHHTCCC----CC-CT------TCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HhcCCCC----CC-Cc------cCCH------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 4332110 00 00 0011 123788899999999999999999999987654
No 151
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.3e-38 Score=361.43 Aligned_cols=261 Identities=24% Similarity=0.356 Sum_probs=196.6
Q ss_pred CCCcccccccccceeEEEEEEC--C--ceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 838 QFDEENVLSRGRYGLIFKASYQ--D--GMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~--~--g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.|++.++||+|+||.||+|.+. + +..||||.+..... ..+.+.+|++++++++||||+++++++...+...++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 5777899999999999999763 2 35689999864332 2467899999999999999999999987655566999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.++++... ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 170 ~e~~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 245 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245 (373)
T ss_dssp EECCTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EECCCCCCHHHHHhhcc----cCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccc
Confidence 99999999999997533 34788999999999999999999999999999999999999999999999999755332
Q ss_pred CCC-CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 992 PAE-ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 992 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
... ........+++.|+|||++.+..++.++|||||||++|||++ |.+||......+....+...... ..+.
T Consensus 246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~------~~p~ 319 (373)
T 3c1x_A 246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRL------LQPE 319 (373)
T ss_dssp ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCC------CCCT
T ss_pred ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCC------CCCC
Confidence 211 112234467889999999998899999999999999999999 77888766555554443322100 0000
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
.... ...+++.+||+.||++||++.|+++.|+.+.....
T Consensus 320 -----~~~~------~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~ 358 (373)
T 3c1x_A 320 -----YCPD------PLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 358 (373)
T ss_dssp -----TCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred -----CCCH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence 0011 12378889999999999999999999998765444
No 152
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-37 Score=367.11 Aligned_cols=246 Identities=22% Similarity=0.306 Sum_probs=201.9
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|.+.+.||+|+||.||+|++. +|+.||||++.... ...+.+.+|+++++.++||||+++++++.... ..++|
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~-~~~lv 94 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS-DIFMV 94 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-EEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-EEEEE
Confidence 57999999999999999999876 69999999986432 23467899999999999999999999998764 55999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 95 ~E~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 95 MEYVSGGELFDYICKN-----GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp EECCSSEEHHHHTTSS-----SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred EeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 9999999999999753 34899999999999999999999999999999999999999999999999999754321
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||...........+... ..
T Consensus 170 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~----~~-------- 233 (476)
T 2y94_A 170 ----EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDG----IF-------- 233 (476)
T ss_dssp ----CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTT----CC--------
T ss_pred ----ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcC----Cc--------
Confidence 22345679999999999988765 68999999999999999999999876655554443321 10
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+.... ....+++.+||+.||++||++.|++++
T Consensus 234 -~~p~~~s-----~~~~~Li~~~L~~dP~~Rpt~~eil~h 267 (476)
T 2y94_A 234 -YTPQYLN-----PSVISLLKHMLQVDPMKRATIKDIREH 267 (476)
T ss_dssp -CCCTTCC-----HHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred -CCCccCC-----HHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence 0000000 112378999999999999999999974
No 153
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=2.4e-37 Score=353.58 Aligned_cols=247 Identities=23% Similarity=0.385 Sum_probs=197.3
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcC----HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTID----ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.+.|+..+.||+|+||.||+|+. .+|+.||||++...... .+.+.+|++++++++||||+++++++... ...++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~l 131 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-HTAWL 131 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-CeEEE
Confidence 45689999999999999999986 57999999999654322 24688999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||++ |++.+++.... ..+++..+..++.|+++||+|||++||+||||||+||+++.++.+||+|||+++...
T Consensus 132 v~e~~~-g~l~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~- 205 (348)
T 1u5q_A 132 VMEYCL-GSASDLLEVHK----KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA- 205 (348)
T ss_dssp EEECCS-EEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS-
T ss_pred EEecCC-CCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecC-
Confidence 999996 68888886543 348999999999999999999999999999999999999999999999999986532
Q ss_pred CCCCCCCCCCCCCCCCccCccccC---CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAAS---TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
......||+.|+|||++. +..++.++|||||||++|||++|+.||...........+... .......
T Consensus 206 ------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~----~~~~~~~ 275 (348)
T 1u5q_A 206 ------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN----ESPALQS 275 (348)
T ss_dssp ------SBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS----CCCCCCC
T ss_pred ------CCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhc----CCCCCCC
Confidence 123457999999999984 567899999999999999999999999765544433332221 1111111
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
.. +.+. ..+++.+||+.||++||+++|++++-
T Consensus 276 ~~----------~~~~--l~~li~~~l~~dP~~Rps~~~ll~h~ 307 (348)
T 1u5q_A 276 GH----------WSEY--FRNFVDSCLQKIPQDRPTSEVLLKHR 307 (348)
T ss_dssp TT----------SCHH--HHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred CC----------CCHH--HHHHHHHHcccChhhCcCHHHHhhCh
Confidence 10 1111 22788899999999999999998754
No 154
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=9.7e-38 Score=346.18 Aligned_cols=253 Identities=26% Similarity=0.402 Sum_probs=199.9
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.++|++.+.||+|+||.||+|+++ |+.||||++.... ..+.+.+|++++++++||||+++++++.......++||||+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~ 97 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 97 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh-HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence 468999999999999999999876 8899999997543 45789999999999999999999999876655669999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEA 995 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 995 (1133)
++++|.+++..... ..+++..+..++.|+++|++|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 98 ~~~~L~~~l~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~---- 170 (278)
T 1byg_A 98 AKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---- 170 (278)
T ss_dssp TTEEHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred CCCCHHHHHHhccc---ccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeecccccccccc----
Confidence 99999999986532 23788899999999999999999999999999999999999999999999998643221
Q ss_pred CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCC
Q 001171 996 SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELD 1074 (1133)
Q Consensus 996 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1133)
.....+++.|+|||++.+..++.++||||+|+++|||++ |+.||......+....+.+... .. ....
T Consensus 171 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~----~~-~~~~----- 238 (278)
T 1byg_A 171 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK----MD-APDG----- 238 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCC----CC-CCTT-----
T ss_pred --ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCC----CC-Cccc-----
Confidence 123357889999999988889999999999999999998 9999987666555444322110 00 0000
Q ss_pred CCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1075 PESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1075 ~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
... ...+++.+||+.||++||++.|+++.|+.++.
T Consensus 239 -~~~------~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~ 273 (278)
T 1byg_A 239 -CPP------AVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 273 (278)
T ss_dssp -CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CCH------HHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence 011 12378889999999999999999999988653
No 155
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.5e-37 Score=347.04 Aligned_cols=257 Identities=21% Similarity=0.313 Sum_probs=202.4
Q ss_pred hcCCCccc-ccccccceeEEEEEEC---CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEEN-VLSRGRYGLIFKASYQ---DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~-~lg~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++|++.+ .||+|+||.||+|.+. .++.||||++.....+ .+.+.+|++++++++||||+++++++.. +..
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~~~ 92 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--ESW 92 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES--SSE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--CCc
Confidence 45788888 9999999999999552 4789999999754322 4678999999999999999999999954 445
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++++|.+++...+ .+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 167 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL 167 (291)
T ss_dssp EEEEECCTTEEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEEeCCCCCHHHHHHhCc-----CCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence 89999999999999998642 3889999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
..............+++.|+|||++.+..++.++||||+|+++|||++ |+.||......+....+... ..... .
T Consensus 168 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~----~~~~~-~ 242 (291)
T 1xbb_A 168 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG----ERMGC-P 242 (291)
T ss_dssp CTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT----CCCCC-C
T ss_pred ccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC----CCCCC-C
Confidence 433322222333457789999999988888999999999999999999 99999876665554443322 11110 0
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
.. ... ...+++.+||+.||++||++.|+++.|+.+..
T Consensus 243 ~~------~~~------~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 279 (291)
T 1xbb_A 243 AG------CPR------EMYDLMNLCWTYDVENRPGFAAVELRLRNYYY 279 (291)
T ss_dssp TT------CCH------HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CC------CCH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 00 011 12378899999999999999999999987543
No 156
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=3.1e-37 Score=343.23 Aligned_cols=256 Identities=23% Similarity=0.427 Sum_probs=203.2
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeC----------
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAG---------- 903 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~---------- 903 (1133)
...+|++.+.||+|+||.||+|.+. +|+.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 4457999999999999999999886 78999999997543 467899999999999999999998753
Q ss_pred -----CCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceE
Q 001171 904 -----PPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAH 978 (1133)
Q Consensus 904 -----~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~k 978 (1133)
.....++||||+++|+|.+++..... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+|
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~k 162 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG---EKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVK 162 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEE
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEE
Confidence 12345899999999999999986432 3488999999999999999999999999999999999999999999
Q ss_pred EeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhh
Q 001171 979 LSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQ 1058 (1133)
Q Consensus 979 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 1058 (1133)
|+|||+++..... .......|++.|+|||++.+..++.++||||+||++|||++|..|+... ... .....
T Consensus 163 l~Dfg~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--~~~----~~~~~ 232 (284)
T 2a19_B 163 IGDFGLVTSLKND----GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET--SKF----FTDLR 232 (284)
T ss_dssp ECCCTTCEESSCC----SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH--HHH----HHHHH
T ss_pred ECcchhheecccc----ccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH--HHH----HHHhh
Confidence 9999998754322 1233456899999999999888999999999999999999999987421 111 11122
Q ss_pred hccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCC
Q 001171 1059 RGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPS 1122 (1133)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~ 1122 (1133)
...+...++ . ...+++.+||+.||++||++.|++++|+.++..+....
T Consensus 233 ~~~~~~~~~----------~------~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~~~ 280 (284)
T 2a19_B 233 DGIISDIFD----------K------KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNE 280 (284)
T ss_dssp TTCCCTTSC----------H------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC------
T ss_pred cccccccCC----------H------HHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCccc
Confidence 221111111 1 12278889999999999999999999999887766543
No 157
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=353.84 Aligned_cols=267 Identities=15% Similarity=0.178 Sum_probs=198.1
Q ss_pred hcCCCcccccccccceeEEEEEEC----CceEEEEEEcccCCc------------CHHHHHHHHHHHhhccCCCeeeEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTI------------DENTFRKEAEALGKVKHRNLTVLRG 899 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~------------~~~~~~~E~~~l~~l~hpniv~l~~ 899 (1133)
.++|++.+.||+|+||.||+|.+. .+..||+|++..... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 357999999999999999999875 578899999875432 1234667888899999999999999
Q ss_pred EEeCC---CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC-
Q 001171 900 YYAGP---PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF- 975 (1133)
Q Consensus 900 ~~~~~---~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~- 975 (1133)
++... ....++||||+ +++|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-----TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-----BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSST
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCC
Confidence 98752 45669999999 999999997644 489999999999999999999999999999999999998887
Q ss_pred -ceEEeccCcccccccCCCC----CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCC-hhhH
Q 001171 976 -EAHLSEFGLDRLAIATPAE----ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQ-DEDI 1049 (1133)
Q Consensus 976 -~~kl~Dfg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~-~~~~ 1049 (1133)
.+||+|||+++........ ........||+.|+|||++.+..++.++|||||||++|||++|+.||.... ....
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 9999999999765332211 111245579999999999998889999999999999999999999995422 2222
Q ss_pred HHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1050 VKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
.......... .++......... ..... ...+++.+||+.||++||++.||++.|+....
T Consensus 270 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~~------~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 270 VQTAKTNLLD-ELPQSVLKWAPS-GSSCC------EIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HHHHHHHHHH-TTTHHHHHHSCT-TSCCH------HHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HHHHHHhhcc-cccHHHHhhccc-cccHH------HHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 2222222211 111111110000 00000 12378889999999999999999999998765
No 158
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=379.15 Aligned_cols=256 Identities=19% Similarity=0.314 Sum_probs=200.6
Q ss_pred CCCccc-ccccccceeEEEEEEC---CceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 838 QFDEEN-VLSRGRYGLIFKASYQ---DGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 838 ~~~~~~-~lg~G~~g~Vy~~~~~---~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++.+.+ .||+|+||.||+|.++ ++..||||+++... ...+.+.+|++++++++|||||++++++... ..++|
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~--~~~lv 413 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE--ALMLV 413 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESS--SEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccC--CeEEE
Confidence 344444 7999999999999764 56789999997543 2457899999999999999999999999763 46999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++.... ..+++..+..++.||+.||+|||+++|+||||||+|||++.++.+||+|||+++.....
T Consensus 414 ~E~~~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~ 489 (613)
T 2ozo_A 414 MEMAGGGPLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD 489 (613)
T ss_dssp EECCTTCBHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--
T ss_pred EEeCCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCC
Confidence 99999999999997532 34899999999999999999999999999999999999999999999999999765332
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
...........+++.|+|||++.+..++.++|||||||++|||++ |+.||......+....+.+..+ ...+ +.
T Consensus 490 ~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~-~~~p----~~- 563 (613)
T 2ozo_A 490 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKR-MECP----PE- 563 (613)
T ss_dssp ------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCC-CCCC----TT-
T ss_pred CceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC-CCCC----Cc-
Confidence 222222233456789999999988899999999999999999998 9999987776665555443211 0000 00
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
... ...+++.+||+.||++||++.+|++.|+.+..
T Consensus 564 -----~~~------~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~ 598 (613)
T 2ozo_A 564 -----CPP------ELYALMSDCWIYKWEDRPDFLTVEQRMRACYY 598 (613)
T ss_dssp -----CCH------HHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred -----CCH------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 001 12278899999999999999999999987543
No 159
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=6.5e-37 Score=340.69 Aligned_cols=251 Identities=18% Similarity=0.294 Sum_probs=203.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||+|++...... .+.+.+|++++++++||||+++++++... ...++|
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~~v 83 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE-SFHYLV 83 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcC-CEEEEE
Confidence 468999999999999999999875 5899999998654433 35678999999999999999999999876 445999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc---eEEeccCccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE---AHLSEFGLDRLA 988 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg~a~~~ 988 (1133)
|||+++++|.+++.... .+++..+..++.|++.|++|||+.||+||||||+||+++.++. +||+|||++...
T Consensus 84 ~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~ 158 (284)
T 3kk8_A 84 FDLVTGGELFEDIVARE-----FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 158 (284)
T ss_dssp ECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence 99999999999987643 3889999999999999999999999999999999999987665 999999998654
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||...........+...... ...+
T Consensus 159 ~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~-----~~~~ 229 (284)
T 3kk8_A 159 NDS----EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYD-----YPSP 229 (284)
T ss_dssp CSS----CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC-----CCTT
T ss_pred ccC----ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcccc-----CCch
Confidence 321 2223457999999999999999999999999999999999999999877666555554432111 1111
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... ... ...+++.+|++.||++||++.|++++
T Consensus 230 ~~~~---~~~------~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 230 EWDT---VTP------EAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp TTTT---SCH------HHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred hhcc---cCH------HHHHHHHHHcccChhhCCCHHHHhcC
Confidence 1110 011 12378899999999999999999974
No 160
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.1e-37 Score=353.03 Aligned_cols=253 Identities=22% Similarity=0.344 Sum_probs=195.6
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC------
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPD------ 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~------ 906 (1133)
.++|++.+.||+|+||.||+|+++ +|+.||||++..... ..+.+.+|++++++++||||+++++++.+...
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 457999999999999999999886 799999999974332 35678999999999999999999998854322
Q ss_pred --------------------------------------------------cEEEEEeccCCCCHHHHHHhhccCCCCCCC
Q 001171 907 --------------------------------------------------VRLLVYDYMPNGNLATLLQEASHQDGHVLN 936 (1133)
Q Consensus 907 --------------------------------------------------~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~ 936 (1133)
..++||||+++|+|.+++...... ...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~--~~~~ 162 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL--EDRE 162 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG--GGSC
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc--cchh
Confidence 268999999999999999875432 3356
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCC---------CCCCCCCCCCCCc
Q 001171 937 WPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAE---------ASSSTTPIGSLGY 1007 (1133)
Q Consensus 937 ~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~---------~~~~~~~~gt~~y 1007 (1133)
+..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+++........ ........||+.|
T Consensus 163 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y 242 (332)
T 3qd2_B 163 HGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLY 242 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGG
T ss_pred hHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCc
Confidence 6778899999999999999999999999999999999999999999999765433211 1123445799999
Q ss_pred cCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHH-HHh
Q 001171 1008 VSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEF-LLG 1086 (1133)
Q Consensus 1008 ~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1086 (1133)
+|||++.+..++.++||||+||++|||++|..|+.. .... .........+. ..... ...
T Consensus 243 ~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~-----~~~~-~~~~~~~~~~~--------------~~~~~~~~~ 302 (332)
T 3qd2_B 243 MSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME-----RVRI-ITDVRNLKFPL--------------LFTQKYPQE 302 (332)
T ss_dssp SCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH-----HHHH-HHHHHTTCCCH--------------HHHHHCHHH
T ss_pred cChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH-----HHHH-HHHhhccCCCc--------------ccccCChhH
Confidence 999999998999999999999999999998877521 1111 11111111111 11111 122
Q ss_pred HhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1087 VKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1087 ~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+++.+||+.||++||++.|++++
T Consensus 303 ~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 303 HMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHccCCCCcCCCHHHHhhc
Confidence 378999999999999999999864
No 161
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=2.9e-37 Score=342.95 Aligned_cols=255 Identities=21% Similarity=0.389 Sum_probs=203.1
Q ss_pred hcCCCcccccccccceeEEEEEECC----ceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQD----GMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.+.||+|+||.||+|.+.. +..||+|.+..... ..+.+.+|++++++++||||+++++++... . .+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~-~~ 88 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-P-TW 88 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-S-CE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-C-CE
Confidence 4679999999999999999997642 45799999875432 346788999999999999999999998754 3 48
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++++|.+++.... ..+++..+..++.|+++||+|||++||+||||||+||+++.++.+||+|||+++...
T Consensus 89 ~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 164 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNK----NSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIE 164 (281)
T ss_dssp EEEECCTTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred EEEecCCCCCHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence 9999999999999998643 338899999999999999999999999999999999999999999999999987543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
... ........+++.|+|||++.+..++.++||||+||++|||++ |+.||......+....+...... ..+.
T Consensus 165 ~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~-~~~~---- 237 (281)
T 3cc6_A 165 DED--YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRL-PKPD---- 237 (281)
T ss_dssp ----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCC-CCCT----
T ss_pred ccc--ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCC-CCCC----
Confidence 221 112234457889999999988889999999999999999998 99999876666655544332110 0000
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
.... ...+++.+||+.||++||++.|++++|+.+.
T Consensus 238 ------~~~~------~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 238 ------LCPP------VLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp ------TCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ------CCCH------HHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 0001 1237889999999999999999999998753
No 162
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=8.6e-37 Score=352.14 Aligned_cols=265 Identities=18% Similarity=0.248 Sum_probs=206.2
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhcc-----CCCeeeEEEEEeCCCCcE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVK-----HRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-----hpniv~l~~~~~~~~~~~ 908 (1133)
..++|++.++||+|+||.||+|++. +++.||||++.......+.+..|++++++++ ||||+++++++... ...
T Consensus 33 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~-~~~ 111 (360)
T 3llt_A 33 LNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYY-DHM 111 (360)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEET-TEE
T ss_pred ecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeEC-Cee
Confidence 4578999999999999999999874 6899999999765545567888999999996 99999999999876 445
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC---------------
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA--------------- 973 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~--------------- 973 (1133)
++||||+ +++|.+++..... ..+++..+..++.||+.||+|||++||+||||||+||+++.
T Consensus 112 ~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~ 187 (360)
T 3llt_A 112 CLIFEPL-GPSLYEIITRNNY---NGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTD 187 (360)
T ss_dssp EEEECCC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTT
T ss_pred EEEEcCC-CCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccc
Confidence 9999999 9999999987543 23889999999999999999999999999999999999975
Q ss_pred ----------CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCcc
Q 001171 974 ----------DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMF 1043 (1133)
Q Consensus 974 ----------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~ 1043 (1133)
++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 188 ~~~~~~~~~~~~~~kl~DFG~a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 261 (360)
T 3llt_A 188 GKKIQIYRTKSTGIKLIDFGCATFKSD------YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRT 261 (360)
T ss_dssp CCEEEEEEESCCCEEECCCTTCEETTS------CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cccccccccCCCCEEEEeccCceecCC------CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 78899999999975321 22345789999999999999999999999999999999999999987
Q ss_pred CChhhHHHHHHHHhhhcc-----------ccccccCC-----cCCCCCCChhHHHH------------HHhHhhhhccCC
Q 001171 1044 TQDEDIVKWVKKQLQRGQ-----------ISELLEPG-----LLELDPESSEWEEF------------LLGVKVGLLCTA 1095 (1133)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~------------~~~~~li~~Cl~ 1095 (1133)
....+....+........ .....+.. +............. ....+++.+||+
T Consensus 262 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~ 341 (360)
T 3llt_A 262 HEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQ 341 (360)
T ss_dssp SSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhc
Confidence 776665555544322110 00000000 00000000000000 122389999999
Q ss_pred CCCCCCCCHHHHHHH
Q 001171 1096 PDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1096 ~dP~~RPs~~evl~~ 1110 (1133)
.||++|||++|++++
T Consensus 342 ~dP~~Rpta~elL~h 356 (360)
T 3llt_A 342 IDPTLRPSPAELLKH 356 (360)
T ss_dssp SSGGGSCCHHHHTTS
T ss_pred CChhhCCCHHHHhcC
Confidence 999999999999853
No 163
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=2.1e-37 Score=347.94 Aligned_cols=262 Identities=20% Similarity=0.321 Sum_probs=202.4
Q ss_pred hcCCCcccccccccceeEEEEEE-----CCceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCC-Cc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-----QDGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPP-DV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-~~ 907 (1133)
.++|++.+.||+|+||.||+|++ .+++.||+|++.... ...+.+.+|++++++++||||+++++++.... ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 34689999999999999999984 368999999986433 23478899999999999999999999987642 44
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.++||||+++|+|.+++.... ..+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 175 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKNK----NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKA 175 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEEEeCCCCcHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECccccccc
Confidence 589999999999999997643 2389999999999999999999999999999999999999999999999999976
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCC-----------hhhHHHHHHHH
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQ-----------DEDIVKWVKKQ 1056 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~-----------~~~~~~~~~~~ 1056 (1133)
...............||..|+|||++.+..++.++||||+||++|||++|+.|+.... .......+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (302)
T 4e5w_A 176 IETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT 255 (302)
T ss_dssp CCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHH
T ss_pred ccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHH
Confidence 5443322233445678889999999988888999999999999999999999864211 11111111221
Q ss_pred hhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcC
Q 001171 1057 LQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGC 1114 (1133)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~ 1114 (1133)
........ .+.. .. ....+++.+||+.||.+||++.|+++.|+.+
T Consensus 256 ~~~~~~~~--------~~~~---~~--~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 256 LKEGKRLP--------CPPN---CP--DEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHTTCCCC--------CCTT---CC--HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HhccCCCC--------CCCC---CC--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 11111000 0000 00 1123789999999999999999999999875
No 164
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=347.54 Aligned_cols=265 Identities=21% Similarity=0.308 Sum_probs=198.6
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
++|++.+.||+|+||.||+|.+. +|+.||+|++...... .+.+.+|++++++++||||+++++++... ...++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~ 81 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRK-RRLHLVF 81 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecC-CeEEEEE
Confidence 57999999999999999999886 5899999998654433 35678899999999999999999999876 4458999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++++|.+++... ..+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus 82 e~~~~~~l~~~~~~~-----~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 155 (311)
T 4agu_A 82 EYCDHTVLHELDRYQ-----RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP- 155 (311)
T ss_dssp ECCSEEHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred EeCCCchHHHHHhhh-----cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc-
Confidence 999999999887753 23889999999999999999999999999999999999999999999999999754321
Q ss_pred CCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccc--------c
Q 001171 993 AEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQI--------S 1063 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~--------~ 1063 (1133)
........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||......+....+.+....... .
T Consensus 156 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T 4agu_A 156 --SDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTN 233 (311)
T ss_dssp ------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTC
T ss_pred --ccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccc
Confidence 112234578999999999865 56799999999999999999999999877766655555443221100 0
Q ss_pred ccccCCcCCCCCCChhHH----HHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1064 ELLEPGLLELDPESSEWE----EFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~----~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.................. ... ...+++.+||+.||++|||++|++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 234 QYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp GGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred cccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 000000000000000000 001 12378999999999999999999975
No 165
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=351.45 Aligned_cols=259 Identities=21% Similarity=0.326 Sum_probs=201.7
Q ss_pred hcCCCcccccccccceeEEEEEEC-Cce----EEEEEEcccC--CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGM----VLSIRRLRDG--TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~----~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
.++|++.++||+|+||.||+|.+. +++ .||+|.+... ....+.+.+|++++++++||||+++++++.... .
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~ 91 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--V 91 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS--E
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC--c
Confidence 457999999999999999999864 343 4677877543 234678999999999999999999999998753 5
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++|+||+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus 92 ~~v~~~~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~ 167 (327)
T 3lzb_A 92 QLITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEEECCCSSCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred eEEEEecCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence 89999999999999998743 34889999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
..... ........+|+.|+|||++.+..++.++||||+||++|||++ |+.||......+....+....... . .
T Consensus 168 ~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~-~----~ 241 (327)
T 3lzb_A 168 GAEEK-EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLP-Q----P 241 (327)
T ss_dssp -------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC-C----C
T ss_pred cCccc-cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCC-C----C
Confidence 33221 122234457889999999999999999999999999999999 999998777666555443321110 0 0
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
+. ... ...+++.+||+.||.+||++.|+++.|+.+...+
T Consensus 242 ~~------~~~------~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 280 (327)
T 3lzb_A 242 PI------CTI------DVYMIMRKCWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp TT------BCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred cc------CCH------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence 00 001 1237889999999999999999999999876543
No 166
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.7e-37 Score=349.69 Aligned_cols=271 Identities=21% Similarity=0.295 Sum_probs=201.7
Q ss_pred HHHhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhc--cCCCeeeEEEEEeCCC---Cc
Q 001171 833 LEATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKV--KHRNLTVLRGYYAGPP---DV 907 (1133)
Q Consensus 833 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l--~hpniv~l~~~~~~~~---~~ 907 (1133)
....++|++.+.||+|+||.||+|+++ |+.||||++.... ...+.+|.+++... +||||+++++++.... ..
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 109 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE--EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ 109 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc--cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence 345678999999999999999999886 8999999986433 34556666666655 8999999999987652 45
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC--------CceecccCccceeeCCCCceEE
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL--------DMVHGDIKPQNVLFDADFEAHL 979 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~--------~ivH~Dlkp~NIll~~~~~~kl 979 (1133)
.++||||+++|+|.++++.. .+++..++.++.|++.||+|||+. ||+||||||+||+++.++.+||
T Consensus 110 ~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl 183 (337)
T 3mdy_A 110 LYLITDYHENGSLYDYLKST------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCI 183 (337)
T ss_dssp EEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEE
T ss_pred eEEEEeccCCCcHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEE
Confidence 68999999999999999753 388999999999999999999998 9999999999999999999999
Q ss_pred eccCcccccccCCCC-CCCCCCCCCCCCccCccccCCCCCCCC------CchhHHHHHHHHHHhC----------CCCCc
Q 001171 980 SEFGLDRLAIATPAE-ASSSTTPIGSLGYVSPEAASTGQPTKE------ADVYSFGIVLLEILTG----------RKPVM 1042 (1133)
Q Consensus 980 ~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~------~DvwSlG~il~el~tg----------~~Pf~ 1042 (1133)
+|||+++........ ........||+.|+|||++.+..++.+ +|||||||++|||++| +.||.
T Consensus 184 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~ 263 (337)
T 3mdy_A 184 ADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYH 263 (337)
T ss_dssp CCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred EeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHh
Confidence 999999654332221 112235579999999999987777665 9999999999999999 66764
Q ss_pred cCCh-hhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1043 FTQD-EDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1043 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
.... .......................+ ..........+++.+||+.||++||++.|++++|+.+....+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~ 334 (337)
T 3mdy_A 264 DLVPSDPSYEDMREIVCIKKLRPSFPNRW-------SSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD 334 (337)
T ss_dssp TTSCSSCCHHHHHHHHTTSCCCCCCCGGG-------GGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred hhcCCCCchhhhHHHHhhhccCccccccc-------hhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence 3221 111222222222111111111100 000111223389999999999999999999999999877554
No 167
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.3e-37 Score=346.93 Aligned_cols=261 Identities=23% Similarity=0.359 Sum_probs=203.4
Q ss_pred hcCCCcccccccccceeEEEEEECC----ceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQD----GMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
..+|++.++||+|+||.||+|.+.+ +..||+|.+..... ..+.+.+|++++++++||||+++++++...+...+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3468889999999999999997642 34689999865332 24678899999999999999999999766666679
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++|+|.+++.... ..+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++...
T Consensus 104 ~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~ 179 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 179 (298)
T ss_dssp EEEECCTTCBHHHHHHCTT----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred EEEeCCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECccccccccc
Confidence 9999999999999997532 347899999999999999999999999999999999999999999999999997543
Q ss_pred cCCCC-CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 990 ATPAE-ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 990 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
..... ........+|+.|+|||.+.+..++.++||||+||++|||++ |.+||......+....+...... ..
T Consensus 180 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 253 (298)
T 3f66_A 180 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRL------LQ 253 (298)
T ss_dssp CGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCC------CC
T ss_pred ccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCC------CC
Confidence 22211 122334567889999999988899999999999999999999 66677655555544443332110 00
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
+.. ... ...+++.+||+.||++||++.|+++.|+++...
T Consensus 254 ~~~-----~~~------~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 292 (298)
T 3f66_A 254 PEY-----CPD------PLYEVMLKCWHPKAEMRPSFSELVSRISAIFST 292 (298)
T ss_dssp CTT-----CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred Ccc-----CCH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 000 011 123788999999999999999999999987553
No 168
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=2.7e-37 Score=366.38 Aligned_cols=247 Identities=20% Similarity=0.315 Sum_probs=194.3
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.++||+|+||.||+|... +|+.||||++... ......+.+|++++++++||||+++++++...+ ..++
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-~~~l 225 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD-RLCF 225 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETT-EEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCC-EEEE
Confidence 467999999999999999999875 6899999998642 223356788999999999999999999998764 4599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhc-CCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHS-LDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~-~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
||||+++|+|.+++...+ .+++..+..++.||+.||+|||+ .||+||||||+|||++.++.+||+|||+++...
T Consensus 226 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 300 (446)
T 4ejn_A 226 VMEYANGGELFFHLSRER-----VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 300 (446)
T ss_dssp EECCCSSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred EEeeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence 999999999999998743 38899999999999999999998 999999999999999999999999999987432
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. ........||+.|+|||++.+..++.++||||+||++|||++|+.||...+.......+... ...++.
T Consensus 301 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~p~----- 370 (446)
T 4ejn_A 301 KD---GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME--EIRFPR----- 370 (446)
T ss_dssp C--------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCT-----
T ss_pred CC---CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhC--CCCCCc-----
Confidence 21 22334568999999999999999999999999999999999999999877666555544331 111111
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCC-----CHHHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-----SMADIVF 1109 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-----s~~evl~ 1109 (1133)
... ....+++.+||+.||.+|| +++|+++
T Consensus 371 ------~~~-----~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 371 ------TLG-----PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp ------TSC-----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ------cCC-----HHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 100 1123789999999999999 9999985
No 169
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.5e-37 Score=353.31 Aligned_cols=274 Identities=22% Similarity=0.347 Sum_probs=211.0
Q ss_pred hcCCCcccccccccceeEEEEEE------CCceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY------QDGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
.++|++.+.||+|+||.||+|++ .+++.||||++.... .....+.+|+.++++++||||+++++++......
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 46899999999999999999974 247789999996432 2345788999999999999999999999876544
Q ss_pred EEEEEeccCCCCHHHHHHhhccC--CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC---CCceEEecc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQ--DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA---DFEAHLSEF 982 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~---~~~~kl~Df 982 (1133)
++||||+++|+|.+++...... ....+++..++.++.||+.||+|||+.||+||||||+||+++. +..+||+||
T Consensus 109 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Df 187 (327)
T 2yfx_A 109 -FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDF 187 (327)
T ss_dssp -EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCC
T ss_pred -EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECcc
Confidence 9999999999999999875432 1234889999999999999999999999999999999999984 446999999
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcc
Q 001171 983 GLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQ 1061 (1133)
Q Consensus 983 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~ 1061 (1133)
|+++....... ........|++.|+|||++.+..++.++|||||||++|||++ |+.||......+....+.....
T Consensus 188 g~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~--- 263 (327)
T 2yfx_A 188 GMARDIYRASY-YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGR--- 263 (327)
T ss_dssp HHHHHHHC-------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCC---
T ss_pred ccccccccccc-cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCC---
Confidence 99875432221 122334567889999999988889999999999999999998 9999977666555444332211
Q ss_pred ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCCCCCCCCC
Q 001171 1062 ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMPSSADPTS 1128 (1133)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~~~~~~~~ 1128 (1133)
.. .... ... ...+++.+||+.||.+||++.|++++|+.+...++......+..
T Consensus 264 -~~-~~~~------~~~------~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~~~~~~~~~~~ 316 (327)
T 2yfx_A 264 -MD-PPKN------CPG------PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIE 316 (327)
T ss_dssp -CC-CCTT------CCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHHHHTCCCCCC
T ss_pred -CC-CCCC------CCH------HHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCHHHhccccccc
Confidence 00 0000 001 12378899999999999999999999999887776655555443
No 170
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.1e-37 Score=352.61 Aligned_cols=260 Identities=19% Similarity=0.313 Sum_probs=201.8
Q ss_pred CCcccccccccceeEEEEEEC-----CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCC-CCcEEE
Q 001171 839 FDEENVLSRGRYGLIFKASYQ-----DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGP-PDVRLL 910 (1133)
Q Consensus 839 ~~~~~~lg~G~~g~Vy~~~~~-----~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~-~~~~~l 910 (1133)
|++.+.||+|+||.||++.++ +++.||||++..... ..+.+.+|++++++++||||+++++++... ....++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 489999999999999998653 589999999975432 245789999999999999999999999764 355689
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++|+|.+++... .+++..++.++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++....
T Consensus 113 v~e~~~~~~L~~~l~~~------~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 186 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRH------SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 186 (318)
T ss_dssp EECCCTTCBHHHHGGGS------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred EEecccCCcHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccc
Confidence 99999999999999753 288999999999999999999999999999999999999999999999999976543
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhh-----------HHHHHHHHhhh
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDED-----------IVKWVKKQLQR 1059 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~-----------~~~~~~~~~~~ 1059 (1133)
............++..|+|||++.+..++.++||||+||++|||++|+.||....... ....+.+....
T Consensus 187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (318)
T 3lxp_A 187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLER 266 (318)
T ss_dssp TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhc
Confidence 3222223344568889999999988888999999999999999999999986432110 11111111111
Q ss_pred ccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1060 GQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
...... ... .. ....+++.+||+.||++||++.|+++.|+.+...
T Consensus 267 ~~~~~~--------~~~---~~--~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 311 (318)
T 3lxp_A 267 GERLPR--------PDK---CP--AEVYHLMKNCWETEASFRPTFENLIPILKTVHEK 311 (318)
T ss_dssp TCCCCC--------CTT---CC--HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ccCCCC--------Ccc---cc--HHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHh
Confidence 110000 000 00 1123788999999999999999999999987543
No 171
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=5.3e-37 Score=348.12 Aligned_cols=263 Identities=20% Similarity=0.349 Sum_probs=208.6
Q ss_pred HhcCCCcccccccccceeEEEEEEC------CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ------DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~ 906 (1133)
..++|++.+.||+|+||.||+|.++ .++.||+|++..... ....+.+|++++++++||||+++++++.....
T Consensus 23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 102 (322)
T 1p4o_A 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP 102 (322)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS
T ss_pred hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCc
Confidence 4568999999999999999999764 378899999975432 23468899999999999999999999987644
Q ss_pred cEEEEEeccCCCCHHHHHHhhcc-----CCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEec
Q 001171 907 VRLLVYDYMPNGNLATLLQEASH-----QDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSE 981 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~-----~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~D 981 (1133)
.++||||+++|+|.+++...+. .....+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|
T Consensus 103 -~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~D 181 (322)
T 1p4o_A 103 -TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGD 181 (322)
T ss_dssp -CEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECC
T ss_pred -cEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEECc
Confidence 4999999999999999986431 1113468899999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhc
Q 001171 982 FGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRG 1060 (1133)
Q Consensus 982 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~ 1060 (1133)
||+++....... ........+|+.|+|||++.+..++.++||||+||++|||++ |+.||......+....+...
T Consensus 182 fg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~---- 256 (322)
T 1p4o_A 182 FGMTRDIYETDY-YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---- 256 (322)
T ss_dssp TTCCCGGGGGGC-EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTT----
T ss_pred Cccccccccccc-cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcC----
Confidence 999875432211 112234467889999999988889999999999999999999 89999776655544443321
Q ss_pred cccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1061 QISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
..... .... .. ...+++.+||+.||++||++.|++++|++...
T Consensus 257 ~~~~~--------~~~~---~~--~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 257 GLLDK--------PDNC---PD--MLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp CCCCC--------CTTC---CH--HHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred CcCCC--------CCCC---CH--HHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 11110 0000 01 12378899999999999999999999998655
No 172
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=8.2e-37 Score=342.09 Aligned_cols=266 Identities=15% Similarity=0.187 Sum_probs=208.4
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
.++|++.+.||+|+||.||+|++ .+|+.||||++.... ..+.+.+|++++++++|++++..+.++.......++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 86 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL 86 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS-SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc-chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEe
Confidence 46899999999999999999987 579999999986543 3457899999999999998887777776555677999999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee---CCCCceEEeccCcccccccC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---DADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||++ +.++.+||+|||+++.....
T Consensus 87 ~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 87 L-GPSLEDLFNFCS----RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp C-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred c-CCCHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 9 999999997533 348999999999999999999999999999999999999 48899999999999765433
Q ss_pred CCCC----CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCCh---hhHHHHHHHHhhhccccc
Q 001171 992 PAEA----SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQD---EDIVKWVKKQLQRGQISE 1064 (1133)
Q Consensus 992 ~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~---~~~~~~~~~~~~~~~~~~ 1064 (1133)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......+...........
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV 241 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHH
T ss_pred ccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHH
Confidence 2211 123456799999999999999999999999999999999999999975332 223333332211111110
Q ss_pred cccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCC
Q 001171 1065 LLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDM 1120 (1133)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~ 1120 (1133)
....+. ....+++.+||+.||++||++.|+++.|+.+......
T Consensus 242 -~~~~~~------------~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 284 (296)
T 3uzp_A 242 -LCKGYP------------SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp -HTTTSC------------HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -HHhhCC------------HHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence 111110 1123788999999999999999999999987665444
No 173
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=346.38 Aligned_cols=245 Identities=22% Similarity=0.254 Sum_probs=188.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.++||+|+||+||+|++. +|+.||||++...... ...+.+|+..+.++ +||||+++++++.+. ...++
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~-~~~~l 134 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG-GILYL 134 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeC-CEEEE
Confidence 357999999999999999999886 6999999998654333 23445566666555 899999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+ +++|.+++...+ ..+++..+..++.||+.||+|||+.+|+||||||+||+++.++.+||+|||+++....
T Consensus 135 v~e~~-~~~L~~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 135 QTELC-GPSLQQHCEAWG----ASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp EEECC-CCBHHHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred EEecc-CCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 99999 779999988753 3489999999999999999999999999999999999999999999999999865422
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
. .......||+.|+|||++.+ .++.++|||||||++|||++|..|+.... .... ..............
T Consensus 210 ~----~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~---~~~~----~~~~~~~~~~~~~~ 277 (311)
T 3p1a_A 210 A----GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE---GWQQ----LRQGYLPPEFTAGL 277 (311)
T ss_dssp ---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH---HHHH----HTTTCCCHHHHTTS
T ss_pred C----CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc---HHHH----HhccCCCcccccCC
Confidence 1 22334569999999999875 78999999999999999999977664321 1111 11111111111110
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
. ....+++.+|++.||++||+++|++++
T Consensus 278 ------~------~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 278 ------S------SELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp ------C------HHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ------C------HHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 0 112378999999999999999999864
No 174
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1e-36 Score=338.84 Aligned_cols=250 Identities=19% Similarity=0.310 Sum_probs=199.1
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-------CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-------DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
++|++.+.||+|+||.||+|.+. +|+.||+|++..... ..+.+.+|++++++++||||+++++++... ...
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~ 83 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK-TDV 83 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCC-CeE
Confidence 57999999999999999999886 689999999864322 357899999999999999999999999876 445
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC----ceEEeccCc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF----EAHLSEFGL 984 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~----~~kl~Dfg~ 984 (1133)
++||||+++++|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.++ .+||+|||+
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-----SLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 99999999999999997643 388999999999999999999999999999999999998877 799999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccc
Q 001171 985 DRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISE 1064 (1133)
Q Consensus 985 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1133)
++..... .......|++.|+|||++.+..++.++||||+|+++|+|++|+.||......+....+.... .....
T Consensus 159 ~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~~~ 232 (283)
T 3bhy_A 159 AHKIEAG----NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVN--YDFDE 232 (283)
T ss_dssp CEECC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTC--CCCCH
T ss_pred ceeccCC----CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcc--cCCcc
Confidence 8754221 12234568999999999998899999999999999999999999998766554443332210 00000
Q ss_pred cccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1065 LLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
...+. .. ....+++.+|++.||++||++.|++++
T Consensus 233 ~~~~~------~~------~~~~~li~~~l~~dp~~Rps~~~~l~h 266 (283)
T 3bhy_A 233 EYFSN------TS------ELAKDFIRRLLVKDPKRRMTIAQSLEH 266 (283)
T ss_dssp HHHTT------CC------HHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred hhccc------CC------HHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence 00000 00 112378999999999999999999973
No 175
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.2e-37 Score=347.83 Aligned_cols=260 Identities=21% Similarity=0.338 Sum_probs=196.6
Q ss_pred hcCCCcccccccccceeEEEEEEC--Cc--eEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ--DG--MVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~--~g--~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
.++|++.+.||+|+||.||+|++. ++ ..||+|++.... ...+.+.+|++++++++||||+++++++....
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-- 94 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-- 94 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC--
Confidence 457999999999999999999763 23 468999986532 22467889999999999999999999998653
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.++||||+++++|.+++.... ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++.
T Consensus 95 ~~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 170 (291)
T 1u46_A 95 MKMVTELAPLGSLLDRLRKHQ----GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA 170 (291)
T ss_dssp CEEEEECCTTCBHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred ceeeEecccCCCHHHHHHhcc----CCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEcccccccc
Confidence 589999999999999998753 2388999999999999999999999999999999999999999999999999876
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
...............++..|+|||++.+..++.++||||+|+++|||++ |+.||......+....+....... . .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~---~-~ 246 (291)
T 1u46_A 171 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERL---P-R 246 (291)
T ss_dssp CCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCC---C-C
T ss_pred ccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCC---C-C
Confidence 5433222223334567889999999988888999999999999999999 999998766655444432211000 0 0
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
.. ... ....+++.+||+.||++||++.|+++.|++....
T Consensus 247 ~~------~~~------~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 247 PE------DCP------QDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp CT------TCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred Cc------CcC------HHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 00 001 1123788899999999999999999999986543
No 176
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.6e-36 Score=349.53 Aligned_cols=254 Identities=23% Similarity=0.365 Sum_probs=202.6
Q ss_pred HHHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---------HHHHHHHHHHHhhc-cCCCeeeEEEEE
Q 001171 833 LEATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---------ENTFRKEAEALGKV-KHRNLTVLRGYY 901 (1133)
Q Consensus 833 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---------~~~~~~E~~~l~~l-~hpniv~l~~~~ 901 (1133)
....++|++.++||+|+||.||+|.++ +|+.||||++...... .+.+.+|+++++++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 445678999999999999999999885 6999999998654321 34678899999999 799999999999
Q ss_pred eCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEec
Q 001171 902 AGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSE 981 (1133)
Q Consensus 902 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~D 981 (1133)
... ...++||||+++++|.+++.... .+++..+..++.||+.||+|||+.||+||||||+||+++.++.+|++|
T Consensus 170 ~~~-~~~~lv~e~~~g~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~D 243 (365)
T 2y7j_A 170 ESS-SFMFLVFDLMRKGELFDYLTEKV-----ALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSD 243 (365)
T ss_dssp EBS-SEEEEEECCCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECC
T ss_pred eeC-CEEEEEEEeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEe
Confidence 875 45699999999999999998643 388999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCCCCCCCCCCCCCCccCccccCC------CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHH
Q 001171 982 FGLDRLAIATPAEASSSTTPIGSLGYVSPEAAST------GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKK 1055 (1133)
Q Consensus 982 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~ 1055 (1133)
||++...... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...........+..
T Consensus 244 fG~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~ 319 (365)
T 2y7j_A 244 FGFSCHLEPG----EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIME 319 (365)
T ss_dssp CTTCEECCTT----CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred cCcccccCCC----cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence 9998754321 22344679999999999853 3578999999999999999999999977665554444333
Q ss_pred HhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1056 QLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... ...+.+.. .. ....+++.+|++.||++||++.|++++
T Consensus 320 ~~~~-----~~~~~~~~---~~------~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 320 GQYQ-----FSSPEWDD---RS------STVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp TCCC-----CCHHHHSS---SC------HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCCC-----CCCccccc---CC------HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 2110 00000000 00 112378999999999999999999874
No 177
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=3.3e-37 Score=378.84 Aligned_cols=248 Identities=21% Similarity=0.315 Sum_probs=197.1
Q ss_pred cccccccceeEEEEEEC---CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEeccC
Q 001171 843 NVLSRGRYGLIFKASYQ---DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYMP 916 (1133)
Q Consensus 843 ~~lg~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~~ 916 (1133)
+.||+|+||.||+|.++ .++.||||+++....+ .+.+.+|++++++++|||||++++++... ..++||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~--~~~lv~E~~~ 452 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAE 452 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS--SEEEEEECCT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC--CEEEEEEccC
Confidence 47999999999999653 4689999999754332 47899999999999999999999999753 3589999999
Q ss_pred CCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCCCCC
Q 001171 917 NGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEAS 996 (1133)
Q Consensus 917 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~ 996 (1133)
+|+|.++++.. ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..........
T Consensus 453 ~g~L~~~l~~~-----~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~ 527 (635)
T 4fl3_A 453 LGPLNKYLQQN-----RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 527 (635)
T ss_dssp TEEHHHHHHHC-----TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred CCCHHHHHhhC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence 99999999763 2388999999999999999999999999999999999999999999999999986543332222
Q ss_pred CCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCCC
Q 001171 997 SSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDP 1075 (1133)
Q Consensus 997 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1133)
......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+....+.+.... ..+. .
T Consensus 528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~-~~p~----~------ 596 (635)
T 4fl3_A 528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERM-GCPA----G------ 596 (635)
T ss_dssp -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCC-CCCT----T------
T ss_pred cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC-CCCC----C------
Confidence 3344557889999999998899999999999999999998 99999877766655554432111 0000 0
Q ss_pred CChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcC
Q 001171 1076 ESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGC 1114 (1133)
Q Consensus 1076 ~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~ 1114 (1133)
.. ....+++.+||+.||++||++++|++.|+.+
T Consensus 597 ~~------~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 597 CP------REMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp CC------HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 00 1123788999999999999999999999864
No 178
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=352.86 Aligned_cols=252 Identities=19% Similarity=0.288 Sum_probs=191.2
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhccC--CCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVKH--RNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h--pniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|..++++.||||++...... .+.+.+|++++++++| |||+++++++... ...++
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~-~~~~l 86 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-QYIYM 86 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeC-CEEEE
Confidence 3579999999999999999999888999999998754433 3578899999999986 9999999999876 45699
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
|||+ .+++|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++ ++.+||+|||+++....
T Consensus 87 v~e~-~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~ 159 (343)
T 3dbq_A 87 VMEC-GNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 159 (343)
T ss_dssp EECC-CSEEHHHHHHHSC-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred EEeC-CCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence 9995 5889999998743 388999999999999999999999999999999999997 67899999999975432
Q ss_pred CCCCCCCCCCCCCCCCccCccccCC-----------CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhh
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAAST-----------GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQR 1059 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~ 1059 (1133)
... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ...+......
T Consensus 160 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~~~~~~ 236 (343)
T 3dbq_A 160 DTT-SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ--ISKLHAIIDP 236 (343)
T ss_dssp -----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH--HHHHHHHHCT
T ss_pred ccc-cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH--HHHHHHHhcC
Confidence 211 112335579999999999854 66889999999999999999999999643322 1111121111
Q ss_pred ccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1060 GQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
.. .. ..+.... ....+++.+||+.||.+||++.|++++-
T Consensus 237 ~~-~~-------~~~~~~~-----~~l~~li~~~L~~dp~~Rpt~~e~l~hp 275 (343)
T 3dbq_A 237 NH-EI-------EFPDIPE-----KDLQDVLKCCLKRDPKQRISIPELLAHP 275 (343)
T ss_dssp TS-CC-------CCCCCSC-----HHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred Cc-cc-------CCcccCC-----HHHHHHHHHHcCCChhHCCCHHHHHhCc
Confidence 10 00 0011100 1123788899999999999999999763
No 179
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=3.1e-37 Score=369.11 Aligned_cols=253 Identities=21% Similarity=0.300 Sum_probs=201.6
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.++||+|+||.||+|+++ +|+.||+|++.+. ......+.+|++++++++|||||++++++... ...++
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~-~~l~l 261 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK-DALCL 261 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeC-CEEEE
Confidence 357899999999999999999875 6999999998543 22356788999999999999999999999876 45699
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++|+|.+++...+. ..+++..+..++.||+.||+|||++||+||||||+||+++.++++||+|||+++....
T Consensus 262 VmEy~~gg~L~~~l~~~~~---~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYHMGQ---AGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp EECCCCSCBHHHHHHSSSS---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEcCCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 9999999999999976432 3489999999999999999999999999999999999999999999999999975432
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...........+.+...... ..+...+
T Consensus 339 ~----~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~--~~~p~~~ 412 (576)
T 2acx_A 339 G----QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVP--EEYSERF 412 (576)
T ss_dssp T----CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCC--CCCCTTS
T ss_pred C----ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhccc--ccCCccC
Confidence 1 122345899999999999988899999999999999999999999976543222222222222111 0011100
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCC-----CHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-----SMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-----s~~evl~~ 1110 (1133)
. ....+++.+|++.||++|| +++||+++
T Consensus 413 ------s------~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 413 ------S------PQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp ------C------HHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred ------C------HHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 0 1123789999999999999 78999854
No 180
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=3.1e-37 Score=359.46 Aligned_cols=254 Identities=21% Similarity=0.338 Sum_probs=189.3
Q ss_pred hcCCCcc-cccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeC---CCCcEE
Q 001171 836 TRQFDEE-NVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAG---PPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~-~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~---~~~~~~ 909 (1133)
.++|.+. ++||+|+||+||+|.++ +|+.||||++.. ...+.+|++++.++ +||||+++++++.. .....+
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 3467666 78999999999999875 689999999863 35678899987554 89999999998864 234568
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC---CCceEEeccCccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA---DFEAHLSEFGLDR 986 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~a~ 986 (1133)
+||||+++|+|.+++..... ..+++..+..++.||+.||+|||+.||+||||||+||+++. ++.+||+|||+++
T Consensus 136 lv~E~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~ 212 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 212 (400)
T ss_dssp EEEECCCSEEHHHHHHCC------CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEEeCCCCcHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEeccccc
Confidence 99999999999999986432 34899999999999999999999999999999999999987 7889999999997
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
.... .......+||+.|+|||++.+..++.++|||||||++|||++|+.||..................+.+. ..
T Consensus 213 ~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~-~~ 287 (400)
T 1nxk_A 213 ETTS----HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYE-FP 287 (400)
T ss_dssp ECC---------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCC-CC
T ss_pred ccCC----CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCccc-CC
Confidence 5422 122345678999999999999999999999999999999999999997544322111111111111110 11
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+.+.. .. . ...+++.+||+.||++||++.|++++
T Consensus 288 ~~~~~~---~s----~--~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 288 NPEWSE---VS----E--EVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TTTTTT---SC----H--HHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred Cccccc---CC----H--HHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 111110 00 1 12378999999999999999999986
No 181
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.6e-37 Score=343.82 Aligned_cols=260 Identities=21% Similarity=0.336 Sum_probs=204.2
Q ss_pred CCCcccccccccceeEEEEEEC----CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 838 QFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.|...++||+|+||.||+|.+. ++..||+|++..... ..+.+.+|++++++++||||+++++++...+...++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 5667799999999999999753 234799999875332 2367889999999999999999999998766666899
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+.+|+|.+++.... ..+++..+..++.|++.||+|||+.||+||||||+||+++.++.+||+|||+++.....
T Consensus 102 ~e~~~~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~ 177 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQ----RNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR 177 (298)
T ss_dssp ECCCTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred EecccCCCHHHHHhccc----cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence 99999999999997632 34789999999999999999999999999999999999999999999999999754322
Q ss_pred CC-CCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCC-CCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 992 PA-EASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRK-PVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 992 ~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~-Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. .........+++.|+|||.+.+..++.++||||+||++|||++|.. ||...+..+....+...... .. ..
T Consensus 178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~----~~- 251 (298)
T 3pls_A 178 EYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRL-PQ----PE- 251 (298)
T ss_dssp GGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCC-CC----CT-
T ss_pred cccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCC-CC----Cc-
Confidence 21 1223344568889999999999999999999999999999999554 45555555544443332110 00 00
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
.... ...+++.+||+.||.+||++.|+++.|+++...-
T Consensus 252 -----~~~~------~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l 289 (298)
T 3pls_A 252 -----YCPD------SLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL 289 (298)
T ss_dssp -----TCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -----cchH------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence 0011 1237889999999999999999999999876543
No 182
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=359.58 Aligned_cols=275 Identities=18% Similarity=0.225 Sum_probs=206.4
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCC-CcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPP-DVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-~~~~lV 911 (1133)
.++|.+.++||+|+||.||+|+++ +|+.||||++.... ...+.+.+|++++++++||||+++++++.... ...++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 357999999999999999999886 48999999986433 23567889999999999999999999987653 356899
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee----CCCCceEEeccCcccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF----DADFEAHLSEFGLDRL 987 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll----~~~~~~kl~Dfg~a~~ 987 (1133)
|||+++|+|.+++...... ..+++..++.++.||+.||+|||+.||+||||||+||++ +.++.+||+|||+++.
T Consensus 88 ~e~~~~g~L~~~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~ 165 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGT--TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred EecCCCCCHHHHHHhhhcc--cCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence 9999999999999864432 238999999999999999999999999999999999999 7888899999999975
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCC--------CCCCCCCchhHHHHHHHHHHhCCCCCccCChh-hHHHHHHHHhh
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAAST--------GQPTKEADVYSFGIVLLEILTGRKPVMFTQDE-DIVKWVKKQLQ 1058 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~-~~~~~~~~~~~ 1058 (1133)
.... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ...+.+.+..
T Consensus 166 ~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~- 240 (396)
T 4eut_A 166 LEDD----EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII- 240 (396)
T ss_dssp CCCG----GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHH-
T ss_pred ccCC----CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHh-
Confidence 4321 22334579999999999864 45678999999999999999999999643321 1112222221
Q ss_pred hccccccc----cCC-----cC-CCCCCChhHHHHHHhH-hhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1059 RGQISELL----EPG-----LL-ELDPESSEWEEFLLGV-KVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1059 ~~~~~~~~----~~~-----~~-~~~~~~~~~~~~~~~~-~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
.+.....+ ... +. ..+....-.......+ +++.+||+.||++||++.|+++.++.+...
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 11111100 000 00 0011111112222222 899999999999999999999999876553
No 183
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=6.5e-37 Score=342.87 Aligned_cols=266 Identities=15% Similarity=0.189 Sum_probs=204.3
Q ss_pred HhcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
..++|++.+.||+|+||.||+|.+ .+++.||||++.... ..+.+.+|++++++++|++++..++++.......++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc-cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence 457899999999999999999987 568999999875433 234688999999999999888887777655667799999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee---CCCCceEEeccCccccccc
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---DADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~ 990 (1133)
|+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||++ +.++.+||+|||+++....
T Consensus 86 ~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 86 LL-GPSLEDLFNFCS----RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp CC-CCBHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred cc-CCCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 99 999999998543 238999999999999999999999999999999999999 7889999999999976543
Q ss_pred CCCCC----CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChh---hHHHHHHHHhhhcccc
Q 001171 991 TPAEA----SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE---DIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 991 ~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~---~~~~~~~~~~~~~~~~ 1063 (1133)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+..........
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIE 240 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHH
T ss_pred cccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhh
Confidence 32211 2234567999999999999999999999999999999999999999754332 2222222221111100
Q ss_pred ccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1064 ELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
.....+. ....+++.+||+.||++||++.|+++.|+.+.....
T Consensus 241 -~~~~~~~------------~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 241 -VLCKGYP------------SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp -HHTTTSC------------HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred -hhhccCC------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 0001110 112378899999999999999999999988765443
No 184
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.5e-37 Score=353.27 Aligned_cols=263 Identities=22% Similarity=0.276 Sum_probs=200.0
Q ss_pred HHHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC------CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCC
Q 001171 833 LEATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG------TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPP 905 (1133)
Q Consensus 833 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~------~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~ 905 (1133)
....++|++.+.||+|+||.||+|.++ +++.||+|++... ....+.+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~- 100 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE- 100 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC-
Confidence 346678999999999999999999774 6889999998542 22346789999999999999999999999876
Q ss_pred CcEEEEEeccCCCCHHHHHHhhccCC-----------------------------------CCCCChHHHHHHHHHHHHH
Q 001171 906 DVRLLVYDYMPNGNLATLLQEASHQD-----------------------------------GHVLNWPMRHLISLGLARG 950 (1133)
Q Consensus 906 ~~~~lV~e~~~~gsL~~~l~~~~~~~-----------------------------------~~~l~~~~~~~i~~~ia~~ 950 (1133)
...++||||+++|+|.+++....... ...+++..++.++.||++|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 45699999999999999986321110 1123566778899999999
Q ss_pred HHHHhcCCceecccCccceeeCCCC--ceEEeccCcccccccCCCC-CCCCCCCCCCCCccCccccCC--CCCCCCCchh
Q 001171 951 LSFLHSLDMVHGDIKPQNVLFDADF--EAHLSEFGLDRLAIATPAE-ASSSTTPIGSLGYVSPEAAST--GQPTKEADVY 1025 (1133)
Q Consensus 951 L~~LH~~~ivH~Dlkp~NIll~~~~--~~kl~Dfg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dvw 1025 (1133)
|+|||+.+|+||||||+||+++.++ .+||+|||+++........ ........||+.|+|||++.+ ..++.++|||
T Consensus 181 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diw 260 (345)
T 3hko_A 181 LHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAW 260 (345)
T ss_dssp HHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHH
T ss_pred HHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHH
Confidence 9999999999999999999998776 8999999999765432221 122345679999999999865 6789999999
Q ss_pred HHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHH
Q 001171 1026 SFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMA 1105 (1133)
Q Consensus 1026 SlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~ 1105 (1133)
|+||++|||++|+.||......+....+...... ...+.... .. ....+++.+||+.||.+||++.
T Consensus 261 slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~~--~~~~~li~~~l~~~p~~Rps~~ 326 (345)
T 3hko_A 261 SAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLC-----FENPNYNV-------LS--PLARDLLSNLLNRNVDERFDAM 326 (345)
T ss_dssp HHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC-----TTSGGGGG-------SC--HHHHHHHHHHSCSCTTTSCCHH
T ss_pred HHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccc-----cCCccccc-------CC--HHHHHHHHHHcCCChhHCCCHH
Confidence 9999999999999999876665554444332110 00000000 00 1123789999999999999999
Q ss_pred HHHHH
Q 001171 1106 DIVFM 1110 (1133)
Q Consensus 1106 evl~~ 1110 (1133)
|++++
T Consensus 327 ~~l~h 331 (345)
T 3hko_A 327 RALQH 331 (345)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 99974
No 185
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=2.5e-37 Score=352.23 Aligned_cols=253 Identities=19% Similarity=0.289 Sum_probs=196.3
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
..++|++.+.||+|+||.||+|.++ +|+.||+|++..... ...+|++++.++ +||||+++++++.+. ...++||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~E~~~l~~~~~hp~iv~~~~~~~~~-~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---DPTEEIEILLRYGQHPNIITLKDVYDDG-KYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---CCHHHHHHHHHHTTSTTBCCEEEEEECS-SEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---ChHHHHHHHHHhcCCCCcCeEEEEEEcC-CEEEEEE
Confidence 4567999999999999999999875 689999999976443 346789999888 799999999999876 4559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC----CceEEeccCccccc
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD----FEAHLSEFGLDRLA 988 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~----~~~kl~Dfg~a~~~ 988 (1133)
||+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||++..+ +.+||+|||+++..
T Consensus 96 E~~~gg~L~~~i~~~~-----~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~ 170 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK-----FFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL 170 (342)
T ss_dssp CCCCSCBHHHHHHTCT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred eCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence 9999999999997642 38899999999999999999999999999999999998443 35999999999754
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
.... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||........... ......+.+.. ...
T Consensus 171 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~-~~~i~~~~~~~-~~~ 245 (342)
T 2qr7_A 171 RAEN---GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEI-LARIGSGKFSL-SGG 245 (342)
T ss_dssp BCTT---CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHH-HHHHHHCCCCC-CST
T ss_pred cCCC---CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHH-HHHHccCCccc-Ccc
Confidence 3221 223456789999999999887789999999999999999999999975332222222 22222222110 000
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+.. .. . ...+++.+|+..||++||++.|++++
T Consensus 246 ~~~~---~s----~--~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 246 YWNS---VS----D--TAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp TTTT---SC----H--HHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred cccc---CC----H--HHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000 00 1 12378999999999999999999864
No 186
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.3e-36 Score=364.80 Aligned_cols=250 Identities=20% Similarity=0.324 Sum_probs=201.9
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC---CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG---TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~---~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
..++|++.++||+|+||+||+|.++ +++.||||++... ......+.+|++++++++||||+++++++... ...++
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~l 98 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-SSFYI 98 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcC-CEEEE
Confidence 3467999999999999999999875 6899999998532 33467889999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC---CCCceEEeccCcccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD---ADFEAHLSEFGLDRL 987 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~---~~~~~kl~Dfg~a~~ 987 (1133)
||||+++|+|.+++...+ .+++..+..++.||+.||+|||++||+||||||+||+++ .++.+||+|||+++.
T Consensus 99 v~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 99 VGELYTGGELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp EECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EEEcCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 999999999999987653 388999999999999999999999999999999999995 456799999999875
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
.... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||......+....+........ .
T Consensus 174 ~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~-----~ 243 (486)
T 3mwu_A 174 FQQN----TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFD-----L 243 (486)
T ss_dssp BCCC--------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSC-----S
T ss_pred CCCC----CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCC-----C
Confidence 4321 22344579999999999865 589999999999999999999999987776666555443211100 0
Q ss_pred CCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1068 PGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+ .+..+. ...+++.+||+.||++|||+.|++++
T Consensus 244 ~----------~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 244 P----------QWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp G----------GGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred c----------ccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 0 111111 12378999999999999999999986
No 187
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=352.58 Aligned_cols=269 Identities=18% Similarity=0.214 Sum_probs=206.0
Q ss_pred hcCCCcccccccccceeEEEEEECC---------ceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeee----------
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQD---------GMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTV---------- 896 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~---------g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~---------- 896 (1133)
.++|++.+.||+|+||.||+|++.. ++.||+|++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 3579999999999999999998764 789999998753 46889999999999999987
Q ss_pred -----EEEEEeCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee
Q 001171 897 -----LRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF 971 (1133)
Q Consensus 897 -----l~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll 971 (1133)
+++++.......++||||+ +++|.+++..... ..+++..+..++.||+.||+|||++||+||||||+||++
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~ 192 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK---HVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFV 192 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEE
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc---CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEE
Confidence 6677766556779999999 9999999987521 348999999999999999999999999999999999999
Q ss_pred CCCC--ceEEeccCcccccccCCCC----CCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCC
Q 001171 972 DADF--EAHLSEFGLDRLAIATPAE----ASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQ 1045 (1133)
Q Consensus 972 ~~~~--~~kl~Dfg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~ 1045 (1133)
+.++ .+||+|||+++........ ........||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 193 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 272 (352)
T 2jii_A 193 DPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL 272 (352)
T ss_dssp ETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred cCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence 9998 8999999999765432211 112234579999999999999899999999999999999999999997643
Q ss_pred -hhhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCC
Q 001171 1046 -DEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDM 1120 (1133)
Q Consensus 1046 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~ 1120 (1133)
.............. ......+..... .... ....+++.+||+.||++||++.|+++.|+++......
T Consensus 273 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 273 PNTEDIMKQKQKFVD-KPGPFVGPCGHW-IRPS------ETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp TCHHHHHHHHHHHHH-SCCCEECTTSCE-ECCC------HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHhccC-Chhhhhhhcccc-CCCc------HHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCC
Confidence 22222222222111 111221111000 0001 1123788899999999999999999999987765543
No 188
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=3.1e-37 Score=349.67 Aligned_cols=247 Identities=21% Similarity=0.363 Sum_probs=175.9
Q ss_pred ccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhcc-CCCeeeEEEEEeCCCCcEEEEEeccCCCC
Q 001171 842 ENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVK-HRNLTVLRGYYAGPPDVRLLVYDYMPNGN 919 (1133)
Q Consensus 842 ~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-hpniv~l~~~~~~~~~~~~lV~e~~~~gs 919 (1133)
.++||+|+||.||+|.++ +|+.||||++... ....+.+|+++++++. ||||+++++++.+. ...++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~-~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR--MEANTQKEITALKLCEGHPNIVKLHEVFHDQ-LHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG--GHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh--hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcC-CEEEEEEEccCCCc
Confidence 378999999999999875 5899999999643 3567889999999997 99999999999876 44599999999999
Q ss_pred HHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC---ceEEeccCcccccccCCCCCC
Q 001171 920 LATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF---EAHLSEFGLDRLAIATPAEAS 996 (1133)
Q Consensus 920 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~~ 996 (1133)
|.+++... ..+++..+..++.||+.||+|||++||+||||||+||+++.++ .+||+|||+++..... ..
T Consensus 93 L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~---~~ 164 (325)
T 3kn6_A 93 LFERIKKK-----KHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD---NQ 164 (325)
T ss_dssp HHHHHHHC-----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------
T ss_pred HHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCC---CC
Confidence 99999874 3489999999999999999999999999999999999997765 7999999999754322 12
Q ss_pred CCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhh---HHHHHHHHhhhccccccccCCcCCC
Q 001171 997 SSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDED---IVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 997 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ....+.+....+.+
T Consensus 165 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~----------- 233 (325)
T 3kn6_A 165 PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF----------- 233 (325)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-----------
T ss_pred cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-----------
Confidence 2344578999999999999999999999999999999999999997543211 11112222222111
Q ss_pred CCCChhHHHHHH-hHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1074 DPESSEWEEFLL-GVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1074 ~~~~~~~~~~~~-~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
......+..+.. ..+++.+|++.||++||++.|++++
T Consensus 234 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 271 (325)
T 3kn6_A 234 SFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN 271 (325)
T ss_dssp CCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred CCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence 011112222222 2378999999999999999999865
No 189
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=9.2e-37 Score=344.61 Aligned_cols=264 Identities=17% Similarity=0.304 Sum_probs=200.2
Q ss_pred HhcCCCcccccccccceeEEEEEEC----CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCC-
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPD- 906 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~- 906 (1133)
..++|.+.+.||+|+||.||+|.+. .+..||+|++...... .+.+.+|++++++++||||+++++++.....
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 4568999999999999999999664 3568999999754333 3568899999999999999999999876432
Q ss_pred ---cEEEEEeccCCCCHHHHHHhhcc-CCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEecc
Q 001171 907 ---VRLLVYDYMPNGNLATLLQEASH-QDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 907 ---~~~lV~e~~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
..++||||+++|+|.+++..... .....+++..++.++.||++||+|||++||+||||||+||+++.++.+||+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Df 191 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADF 191 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSC
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeec
Confidence 34899999999999999965432 22345899999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcc
Q 001171 983 GLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQ 1061 (1133)
Q Consensus 983 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~ 1061 (1133)
|+++....... ........+++.|+|||++.+..++.++|||||||++|||++ |..||...........+......
T Consensus 192 g~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~-- 268 (313)
T 3brb_A 192 GLSKKIYSGDY-YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRL-- 268 (313)
T ss_dssp SCC-----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC--
T ss_pred Ccceecccccc-cCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCC--
Confidence 99875432211 122234457889999999998899999999999999999999 89999877666655544332111
Q ss_pred ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcC
Q 001171 1062 ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~ 1116 (1133)
.. ... ... ...+++.+||+.||++||++.|++++|+.+..
T Consensus 269 --~~-~~~------~~~------~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~ 308 (313)
T 3brb_A 269 --KQ-PED------CLD------ELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLE 308 (313)
T ss_dssp --CC-BTT------CCH------HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --CC-Ccc------ccH------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 00 000 001 12378899999999999999999999987643
No 190
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=6.8e-37 Score=340.52 Aligned_cols=253 Identities=23% Similarity=0.333 Sum_probs=197.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|.+.+.||+|+||.||+|..+ ++..||+|++.... ...+.+.+|++++++++||||+++++++... ...++||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~ 99 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDY-HNMYIVM 99 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEE
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecC-CeEEEEE
Confidence 457999999999999999999875 58999999986543 3457899999999999999999999999876 4559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee---CCCCceEEeccCcccccc
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---DADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~ 989 (1133)
||+++|+|.+++...... ...+++..+..++.||++||+|||+.||+||||||+||++ +.++.+||+|||+++...
T Consensus 100 e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 100 ETCEGGELLERIVSAQAR-GKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CCCSCCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred EeCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 999999999998764321 2448999999999999999999999999999999999999 456789999999986543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. .......||+.|+|||++. +.++.++||||+||++|||++|+.||......+......... ..... .
T Consensus 179 ~~----~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~--~~~~~--~-- 247 (285)
T 3is5_A 179 SD----EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKE--PNYAV--E-- 247 (285)
T ss_dssp ------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC--CCCCC-----
T ss_pred Cc----ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCC--ccccc--c--
Confidence 21 2233457899999999985 568899999999999999999999998766555444332211 10000 0
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
. ..... ...+++.+|++.||++||++.|++++
T Consensus 248 ~---~~~~~------~~~~li~~~L~~dP~~Rps~~e~l~h 279 (285)
T 3is5_A 248 C---RPLTP------QAVDLLKQMLTKDPERRPSAAQVLHH 279 (285)
T ss_dssp ----CCCCH------HHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred c---CcCCH------HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0 00111 12378899999999999999999863
No 191
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=3.3e-37 Score=351.61 Aligned_cols=263 Identities=20% Similarity=0.280 Sum_probs=205.6
Q ss_pred HhcCCCcccccccccceeEEEEEECC------ceEEEEEEcccCCc--CHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQD------GMVLSIRRLRDGTI--DENTFRKEAEALGKV-KHRNLTVLRGYYAGPP 905 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~------g~~vavK~~~~~~~--~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~ 905 (1133)
..++|++.+.||+|+||.||+|.+.. +..||+|.+..... ..+.+.+|+++++++ +||||+++++++....
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 35689999999999999999998742 24799999975432 246788999999999 8999999999998765
Q ss_pred CcEEEEEeccCCCCHHHHHHhhccC---------CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc
Q 001171 906 DVRLLVYDYMPNGNLATLLQEASHQ---------DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE 976 (1133)
Q Consensus 906 ~~~~lV~e~~~~gsL~~~l~~~~~~---------~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~ 976 (1133)
. .++||||+++|+|.+++...... ....+++..+..++.||+.||+|||++||+||||||+||+++.++.
T Consensus 124 ~-~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~ 202 (333)
T 2i1m_A 124 P-VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHV 202 (333)
T ss_dssp S-CEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGE
T ss_pred c-eEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCe
Confidence 4 49999999999999999865321 1234789999999999999999999999999999999999999999
Q ss_pred eEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHH
Q 001171 977 AHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKK 1055 (1133)
Q Consensus 977 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~ 1055 (1133)
+||+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |..||...........+..
T Consensus 203 ~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~ 281 (333)
T 2i1m_A 203 AKIGDFGLARDIMNDSN-YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVK 281 (333)
T ss_dssp EEBCCCGGGCCGGGCTT-SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHH
T ss_pred EEECccccccccccccc-eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHh
Confidence 99999999975533221 112234557889999999988889999999999999999998 9999976554433322222
Q ss_pred HhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1056 QLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
...... ... .... ...+++.+||+.||.+||++.|+++.|+...
T Consensus 282 ~~~~~~----~~~------~~~~------~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 282 DGYQMA----QPA------FAPK------NIYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp HTCCCC----CCT------TCCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCCCC----CCC------CCCH------HHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 111100 000 0011 1237888999999999999999999998754
No 192
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=349.38 Aligned_cols=265 Identities=21% Similarity=0.321 Sum_probs=198.0
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC--HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID--ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
++|.+.+.||+|+||.||+|... +++.||+|++...... ...+.+|++++++++||||+++++++.... ..++|||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~lv~e 80 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK-SLTLVFE 80 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS-CEEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCC-EEEEEec
Confidence 57999999999999999999876 6899999998643322 124567999999999999999999998764 4599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 993 (1133)
|++ |+|.+++...+ ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++.....
T Consensus 81 ~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-- 153 (324)
T 3mtl_A 81 YLD-KDLKQYLDDCG----NIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIP-- 153 (324)
T ss_dssp CCS-EEHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred ccc-cCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCC--
Confidence 996 69999988643 34889999999999999999999999999999999999999999999999998643221
Q ss_pred CCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccc---cccC-
Q 001171 994 EASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISE---LLEP- 1068 (1133)
Q Consensus 994 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 1068 (1133)
........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+....+.+......... ....
T Consensus 154 -~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 232 (324)
T 3mtl_A 154 -TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNE 232 (324)
T ss_dssp ----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCH
T ss_pred -ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcch
Confidence 122334578999999999876 5689999999999999999999999988877777766666543221110 0000
Q ss_pred -----CcCCCCCCC--hhHHHH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1069 -----GLLELDPES--SEWEEF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1069 -----~~~~~~~~~--~~~~~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
......... .....+ ....+++.+|++.||++|||++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 282 (324)
T 3mtl_A 233 EFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH 282 (324)
T ss_dssp HHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence 000000000 000000 122378999999999999999999874
No 193
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.8e-36 Score=364.88 Aligned_cols=250 Identities=20% Similarity=0.303 Sum_probs=201.0
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC--------------cCHHHHHHHHHHHhhccCCCeeeEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--------------IDENTFRKEAEALGKVKHRNLTVLRG 899 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--------------~~~~~~~~E~~~l~~l~hpniv~l~~ 899 (1133)
..++|.+.++||+|+||+||+|.++ +++.||+|++.... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3568999999999999999999875 57899999986533 22467889999999999999999999
Q ss_pred EEeCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC---c
Q 001171 900 YYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF---E 976 (1133)
Q Consensus 900 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~---~ 976 (1133)
++... ...++||||+++|+|.+++.... .+++..+..++.||+.||+|||+.||+||||||+||+++.++ .
T Consensus 114 ~~~~~-~~~~lv~e~~~gg~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~ 187 (504)
T 3q5i_A 114 VFEDK-KYFYLVTEFYEGGELFEQIINRH-----KFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLN 187 (504)
T ss_dssp EEECS-SEEEEEEECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSS
T ss_pred EEEcC-CEEEEEEecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCcc
Confidence 99876 45599999999999999997643 389999999999999999999999999999999999998776 6
Q ss_pred eEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHH
Q 001171 977 AHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQ 1056 (1133)
Q Consensus 977 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~ 1056 (1133)
+||+|||+++..... .......||+.|+|||++. +.++.++||||+||++|+|++|+.||......+....+.+.
T Consensus 188 ~kl~Dfg~a~~~~~~----~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~ 262 (504)
T 3q5i_A 188 IKIVDFGLSSFFSKD----YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKG 262 (504)
T ss_dssp EEECCCTTCEECCTT----SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred EEEEECCCCEEcCCC----CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcC
Confidence 999999999754321 2234567999999999986 46899999999999999999999999877776666555442
Q ss_pred hhhccccccccCCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1057 LQRGQISELLEPGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... .....+..+. ...+++.+|++.||.+|||+.|++++
T Consensus 263 ~~~---------------~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 263 KYY---------------FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp CCC---------------CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCC---------------CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 110 0001111111 12378999999999999999999865
No 194
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=1.5e-36 Score=364.81 Aligned_cols=250 Identities=20% Similarity=0.313 Sum_probs=198.6
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC---cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT---IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.++||+|+||+||+|+++ ++..||+|++.... .....+.+|++++++++||||+++++++... ...++|
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~lv 114 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDK-RNYYLV 114 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-CEEEEE
Confidence 457999999999999999999876 68999999986532 2356789999999999999999999999876 445999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC---CceEEeccCccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD---FEAHLSEFGLDRLA 988 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~ 988 (1133)
|||+++|+|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.. +.+||+|||+++..
T Consensus 115 ~e~~~~g~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~ 189 (494)
T 3lij_A 115 MECYKGGELFDEIIHRM-----KFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF 189 (494)
T ss_dssp EECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred EecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence 99999999999987643 38899999999999999999999999999999999999764 45999999998754
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
... .......||+.|+|||++. +.++.++||||+||++|+|++|+.||......+....+...... ...+
T Consensus 190 ~~~----~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~-----~~~~ 259 (494)
T 3lij_A 190 ENQ----KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYT-----FDSP 259 (494)
T ss_dssp BTT----BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC-----CCSG
T ss_pred CCC----ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC-----CCch
Confidence 322 2234467999999999986 56899999999999999999999999877776666555442111 0111
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+... . ....+++.+||+.||.+|||+.|++++
T Consensus 260 ~~~~~---s------~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 260 EWKNV---S------EGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp GGTTS---C------HHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred hcccC---C------HHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 11110 0 112378999999999999999999854
No 195
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.2e-36 Score=362.33 Aligned_cols=195 Identities=21% Similarity=0.333 Sum_probs=153.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCC----CCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGP----PDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~----~~~ 907 (1133)
.++|++.++||+|+||+||+|.++ +|+.||||++.....+ .+.+.+|++++++++|||||++++++... ...
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 468999999999999999999775 6899999998654332 46788999999999999999999998533 245
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.|+||||+ +|+|.+++... ..+++..+..++.||+.||+|||+.||+||||||+|||++.++.+||+|||+++.
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTP-----VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSS-----CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEecc-ccchhhhcccC-----CCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchh
Confidence 69999998 57999998753 3489999999999999999999999999999999999999999999999999976
Q ss_pred cccCCCCC------------------------CCCCCCCCCCCccCcccc-CCCCCCCCCchhHHHHHHHHHHh
Q 001171 988 AIATPAEA------------------------SSSTTPIGSLGYVSPEAA-STGQPTKEADVYSFGIVLLEILT 1036 (1133)
Q Consensus 988 ~~~~~~~~------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlG~il~el~t 1036 (1133)
........ ......+||+.|+|||++ .+..++.++||||+||++|||++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence 53221110 123445789999999986 56679999999999999999999
No 196
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=6.7e-37 Score=355.58 Aligned_cols=250 Identities=19% Similarity=0.286 Sum_probs=191.4
Q ss_pred cCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhcc--CCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVK--HRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~--hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|++.+.||+|+||.||+|...+++.||||++.....+ .+.+.+|++++++++ ||||+++++++.... ..++|
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~-~~~lv 134 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ-YIYMV 134 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS-EEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCC-EEEEE
Confidence 469999999999999999999888999999999654433 367889999999996 599999999998764 46999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|| +.+++|.+++.... .+++..+..++.||+.||+|||+.+|+||||||+|||++ ++.+||+|||+++.....
T Consensus 135 ~E-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp EE-CCSEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred Ee-cCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 99 56889999998643 378889999999999999999999999999999999995 589999999999754322
Q ss_pred CCCCCCCCCCCCCCCccCccccCC-----------CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAAST-----------GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRG 1060 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 1060 (1133)
.. ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ...+.......
T Consensus 208 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~--~~~~~~~~~~~ 284 (390)
T 2zmd_A 208 TT-SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ--ISKLHAIIDPN 284 (390)
T ss_dssp -------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--HHHHHHHHCTT
T ss_pred Cc-cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH--HHHHHHHhCcc
Confidence 11 112345679999999999864 36888999999999999999999999654322 11122211111
Q ss_pred cccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1061 QISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... ..+.... ....+++.+||+.||++||++.|++++
T Consensus 285 -~~~-------~~~~~~~-----~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 285 -HEI-------EFPDIPE-----KDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp -SCC-------CCCCCSC-----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -ccC-------CCCccch-----HHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 000 0001100 112378899999999999999999975
No 197
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.8e-36 Score=346.44 Aligned_cols=263 Identities=21% Similarity=0.299 Sum_probs=198.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCC-----C
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPP-----D 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-----~ 906 (1133)
.++|++.+.||+|+||.||+|.+. +|+.||||++...... .+.+.+|++++++++||||+++++++.... .
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 468999999999999999999874 6899999999654332 356789999999999999999999997542 2
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
..++||||+ +++|.++++.. .+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~------~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 176 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE------KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLAR 176 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeeccc
Confidence 348999999 88999999762 37899999999999999999999999999999999999999999999999997
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcc----
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQ---- 1061 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~---- 1061 (1133)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...+..+....+.+......
T Consensus 177 ~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~ 250 (367)
T 1cm8_A 177 QADS------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFV 250 (367)
T ss_dssp ECCS------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred cccc------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence 5421 2344578999999999876 6789999999999999999999999987766555554444322110
Q ss_pred --------------ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH--HhcCcC
Q 001171 1062 --------------ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM--LEGCRV 1116 (1133)
Q Consensus 1062 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~--Le~~~~ 1116 (1133)
++......+........ ....+++.+|++.||++|||++|++++ ++....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~ 316 (367)
T 1cm8_A 251 QRLQSDEAKNYMKGLPELEKKDFASILTNAS-----PLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD 316 (367)
T ss_dssp HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCC-----HHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCC-----HHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcC
Confidence 00000011111111100 123378999999999999999999985 455443
No 198
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=1.6e-36 Score=337.44 Aligned_cols=246 Identities=21% Similarity=0.343 Sum_probs=201.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|... +++.||+|++... ....+.+.+|++++++++||||+++++++... ...++
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~l 91 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDR-KRIYL 91 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcC-CEEEE
Confidence 357999999999999999999875 5889999998542 22346789999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++|+|.+++...+ .+++..+..++.||++|++|||+.||+||||||+||+++.++.+||+|||++.....
T Consensus 92 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~ 166 (284)
T 2vgo_A 92 MLEFAPRGELYKELQKHG-----RFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS 166 (284)
T ss_dssp EECCCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSS
T ss_pred EEEeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcc
Confidence 999999999999998753 388999999999999999999999999999999999999999999999999864321
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.......|++.|+|||++.+..++.++||||+|+++|||++|+.||......+....+.. ...
T Consensus 167 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~----~~~-------- 229 (284)
T 2vgo_A 167 -----LRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVN----VDL-------- 229 (284)
T ss_dssp -----SCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHT----TCC--------
T ss_pred -----cccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhc----ccc--------
Confidence 122345789999999999998899999999999999999999999976665544333222 110
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.++.... . ...+++.+|++.||.+||++.|++++
T Consensus 230 -~~~~~~~---~--~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 230 -KFPPFLS---D--GSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp -CCCTTSC---H--HHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred -CCCCcCC---H--HHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 0011100 0 12378899999999999999999963
No 199
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.8e-36 Score=338.17 Aligned_cols=246 Identities=22% Similarity=0.349 Sum_probs=194.3
Q ss_pred CCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeC---CCCcEEE
Q 001171 838 QFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAG---PPDVRLL 910 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~---~~~~~~l 910 (1133)
.|.+.+.||+|+||.||+|.+. ++..||+|++...... .+.+.+|++++++++||||+++++++.. .....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 5788899999999999999775 5889999998654332 4568899999999999999999998864 2345689
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC--ceecccCccceeeC-CCCceEEeccCcccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD--MVHGDIKPQNVLFD-ADFEAHLSEFGLDRL 987 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~--ivH~Dlkp~NIll~-~~~~~kl~Dfg~a~~ 987 (1133)
||||+++|+|.+++.... .+++..+..++.||+.||+|||+.+ |+||||||+||+++ .++.+||+|||++..
T Consensus 107 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEEecCCCCHHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 999999999999998743 3789999999999999999999999 99999999999997 789999999999864
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChh-hHHHHHHHHhhhccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE-DIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~ 1066 (1133)
... .......||+.|+|||++. +.++.++||||+||++|+|++|+.||...... .....+ .........
T Consensus 182 ~~~-----~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~----~~~~~~~~~ 251 (290)
T 1t4h_A 182 KRA-----SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRV----TSGVKPASF 251 (290)
T ss_dssp CCT-----TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHH----TTTCCCGGG
T ss_pred ccc-----cccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHH----hccCCcccc
Confidence 322 1223456899999999886 45899999999999999999999999754332 222221 111111111
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+... . ....+++.+||+.||++||++.|++++
T Consensus 252 ~~~~------~------~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 252 DKVA------I------PEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp GGCC------C------HHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CCCC------C------HHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 1111 0 112378999999999999999999864
No 200
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=352.59 Aligned_cols=271 Identities=20% Similarity=0.294 Sum_probs=194.9
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHH--HhhccCCCeeeEEEEEe----CCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEA--LGKVKHRNLTVLRGYYA----GPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~--l~~l~hpniv~l~~~~~----~~~~~~~ 909 (1133)
.++|++.+.||+|+||.||+|++ +++.||||++.... ...+..|.++ +..++||||+++++++. ......+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~ 88 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN--RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL 88 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc--hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence 46899999999999999999977 58999999997543 3444445554 55589999999997653 2233458
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC---------CceecccCccceeeCCCCceEEe
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL---------DMVHGDIKPQNVLFDADFEAHLS 980 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~---------~ivH~Dlkp~NIll~~~~~~kl~ 980 (1133)
+||||+++|+|.+++.... .++..+..++.||++||+|||+. ||+||||||+||+++.++.+||+
T Consensus 89 lv~e~~~~g~L~~~l~~~~------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 89 LVMEYYPNGSLXKYLSLHT------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEECCCTTCBHHHHHHHCC------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred EEEecCCCCcHHHHHhhcc------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 9999999999999997632 57889999999999999999999 99999999999999999999999
Q ss_pred ccCcccccccCCC-----CCCCCCCCCCCCCccCccccCC-------CCCCCCCchhHHHHHHHHHHhCCCCCccCCh-h
Q 001171 981 EFGLDRLAIATPA-----EASSSTTPIGSLGYVSPEAAST-------GQPTKEADVYSFGIVLLEILTGRKPVMFTQD-E 1047 (1133)
Q Consensus 981 Dfg~a~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~-~ 1047 (1133)
|||+++....... .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... .
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~ 242 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence 9999976533211 1122334579999999999976 3456789999999999999999877643211 1
Q ss_pred h-------------HHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcC
Q 001171 1048 D-------------IVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGC 1114 (1133)
Q Consensus 1048 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~ 1114 (1133)
. ....+............+...+ ....... ....+++.+||+.||++|||+.|+++.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~l~~li~~cl~~dP~~Rps~~e~l~~L~~l 316 (336)
T 3g2f_A 243 EYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAW----KENSLAV--RSLKETIEDCWDQDAEARLTAQXAEERMAEL 316 (336)
T ss_dssp CCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTC----CCCSHHH--HHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHhhhcccCCCchHHHHHhhhcccccCCCCCccc----ccccchH--HHHHHHHHHHhcCChhhCcchHHHHHHHHHH
Confidence 0 0011111111111111111111 1111111 1233899999999999999999999999887
Q ss_pred cCCCCCC
Q 001171 1115 RVGPDMP 1121 (1133)
Q Consensus 1115 ~~~~~~~ 1121 (1133)
...-..-
T Consensus 317 l~~~~~~ 323 (336)
T 3g2f_A 317 MMIWERN 323 (336)
T ss_dssp HHCCCC-
T ss_pred HHHHHhc
Confidence 6544433
No 201
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=6.6e-36 Score=343.34 Aligned_cols=270 Identities=19% Similarity=0.218 Sum_probs=205.7
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCc---CHHHHHHHHHHHhhccCCCeeeEEEEEeCC-------
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTI---DENTFRKEAEALGKVKHRNLTVLRGYYAGP------- 904 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~------- 904 (1133)
.++|++.++||+|+||.||+|++ .+|+.||+|++..... ....+.+|++++++++||||+++++++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 35899999999999999999988 4689999999864332 245788999999999999999999998753
Q ss_pred CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCc
Q 001171 905 PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGL 984 (1133)
Q Consensus 905 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~ 984 (1133)
....++||||++ |++.+.+.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+
T Consensus 96 ~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 170 (351)
T 3mi9_A 96 KGSIYLVFDFCE-HDLAGLLSNVL----VKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGL 170 (351)
T ss_dssp -CEEEEEEECCS-EEHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CceEEEEEeccC-CCHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchh
Confidence 234689999996 57877776532 3389999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCC-CCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccc
Q 001171 985 DRLAIATPA-EASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQI 1062 (1133)
Q Consensus 985 a~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~ 1062 (1133)
++....... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...........+.+.......
T Consensus 171 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~ 250 (351)
T 3mi9_A 171 ARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITP 250 (351)
T ss_dssp CEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred cccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCh
Confidence 976543222 2223345678999999999876 45799999999999999999999999887777666666554332211
Q ss_pred cc---cccC----CcCCCCCCChhH-HHH------HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1063 SE---LLEP----GLLELDPESSEW-EEF------LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1063 ~~---~~~~----~~~~~~~~~~~~-~~~------~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. .... ............ ... ....+++.+|++.||++||+++|++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 251 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp TTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 00 0000 000000000111 111 123489999999999999999999976
No 202
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.6e-36 Score=350.12 Aligned_cols=268 Identities=21% Similarity=0.304 Sum_probs=205.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC--HHHHHHHHHHHhhccCCCeeeEEEEEeCCC----CcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID--ENTFRKEAEALGKVKHRNLTVLRGYYAGPP----DVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l~hpniv~l~~~~~~~~----~~~ 908 (1133)
.++|++.++||+|+||.||+|.+. +++.||||++...... .+.+.+|++++++++||||+++++++.... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 457999999999999999999775 6899999999743322 367889999999999999999999986542 356
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||++ |+|.+++... .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus 106 ~iv~e~~~-~~L~~~l~~~------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~ 178 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ------HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEcccC-cCHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence 89999996 6999998752 3889999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc-
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL- 1066 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~- 1066 (1133)
..............||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+....+.............
T Consensus 179 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 258 (364)
T 3qyz_A 179 DPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNC 258 (364)
T ss_dssp CGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHT
T ss_pred CCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHH
Confidence 433322223345689999999998654 458999999999999999999999998777766666655433221110000
Q ss_pred --cC---C-cCCC-CCCChhHHHH-----HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 --EP---G-LLEL-DPESSEWEEF-----LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 --~~---~-~~~~-~~~~~~~~~~-----~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+. . .... ......+... ....+++.+|++.||++|||+.|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 259 IINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp CCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 00 0 0000 0000001111 122389999999999999999999975
No 203
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=7e-37 Score=347.77 Aligned_cols=267 Identities=20% Similarity=0.245 Sum_probs=195.4
Q ss_pred HHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
...++|++.++||+|+||+||+|.+. +++.||||++...... .+.+.+|++++++++||||+++++++... ...+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~ 109 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN-HRLH 109 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEET-TEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecC-CEEE
Confidence 35678999999999999999999765 6899999999654332 34677899999999999999999999876 4459
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee-----CCCCceEEeccCc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF-----DADFEAHLSEFGL 984 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll-----~~~~~~kl~Dfg~ 984 (1133)
+||||++ |+|.+++.... .+++..+..++.||+.||+|||++||+||||||+||++ +.++.+||+|||+
T Consensus 110 lv~e~~~-~~L~~~~~~~~-----~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 110 LIFEYAE-NDLKKYMDKNP-----DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEEECCS-EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEEecCC-CCHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 9999997 59999998643 38899999999999999999999999999999999999 4555699999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc
Q 001171 985 DRLAIATPAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 985 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~ 1063 (1133)
++..... ........||+.|+|||++.+. .++.++||||+||++|||++|+.||......+....+..........
T Consensus 184 a~~~~~~---~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 260 (329)
T 3gbz_A 184 ARAFGIP---IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDT 260 (329)
T ss_dssp HHHHC--------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTT
T ss_pred ccccCCc---ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchh
Confidence 9755321 1223345689999999999774 48999999999999999999999998776666555554433221110
Q ss_pred ccc----cCCcCCCC--CCChhHHHH------HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1064 ELL----EPGLLELD--PESSEWEEF------LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1064 ~~~----~~~~~~~~--~~~~~~~~~------~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... .+.+.... ......... ....+++.+||+.||++|||++|++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 319 (329)
T 3gbz_A 261 TWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH 319 (329)
T ss_dssp TSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred hhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence 000 00000000 000111111 122389999999999999999999863
No 204
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=7.7e-37 Score=347.99 Aligned_cols=266 Identities=21% Similarity=0.358 Sum_probs=198.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.++||+|+||.||+|++. +|+.||+|++...... .+.+.+|++++++++||||+++++++... ...++|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv 102 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK-KRWYLV 102 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC-CEEEEE
Confidence 458999999999999999999876 4899999998654433 34578899999999999999999999876 445999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++++|.++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++.....
T Consensus 103 ~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 177 (331)
T 4aaa_A 103 FEFVDHTILDDLELFP-----NGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 177 (331)
T ss_dssp EECCSEEHHHHHHHST-----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred EecCCcchHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence 9999999888876543 23889999999999999999999999999999999999999999999999998654322
Q ss_pred CCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhc----------
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRG---------- 1060 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~---------- 1060 (1133)
. .......|++.|+|||++.+. .++.++||||+||++|||++|+.||......+....+.......
T Consensus 178 ~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (331)
T 4aaa_A 178 G---EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNK 254 (331)
T ss_dssp ---------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred c---cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhh
Confidence 1 223345789999999999765 68999999999999999999999998776655444443321110
Q ss_pred --cccccccCCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1061 --QISELLEPGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1061 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.......+...........+..+. ...+++.+||+.||++||+++|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 255 NPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp CGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 001111111111000000000111 12378999999999999999999864
No 205
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.9e-36 Score=354.69 Aligned_cols=264 Identities=19% Similarity=0.262 Sum_probs=206.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhc------cCCCeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKV------KHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~l~~~~~~~~~~~ 908 (1133)
..+|++.++||+|+||.||+|.+. +++.||||++.......+.+.+|+++++.+ .|+||+++++++... ...
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~-~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR-NHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET-TEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC-CeE
Confidence 457999999999999999999775 589999999976554456788899999888 467999999999876 445
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc--eEEeccCccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE--AHLSEFGLDR 986 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~--~kl~Dfg~a~ 986 (1133)
++||||+. ++|.+++..... ..+++..+..++.||+.||+|||+++|+||||||+|||++.++. +||+|||+++
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKF---QGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999995 799999987543 23899999999999999999999999999999999999999887 9999999986
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccc----
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQI---- 1062 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~---- 1062 (1133)
... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...+..+....+.+.......
T Consensus 251 ~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~ 324 (429)
T 3kvw_A 251 YEH------QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLD 324 (429)
T ss_dssp ETT------CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred ecC------CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 432 1233457899999999999999999999999999999999999999887776665555543221110
Q ss_pred -----cccccCC--------------------------cCCCCCCChhHHHH------HHhHhhhhccCCCCCCCCCCHH
Q 001171 1063 -----SELLEPG--------------------------LLELDPESSEWEEF------LLGVKVGLLCTAPDPLDRPSMA 1105 (1133)
Q Consensus 1063 -----~~~~~~~--------------------------~~~~~~~~~~~~~~------~~~~~li~~Cl~~dP~~RPs~~ 1105 (1133)
...++.. .....+....+... ....+++.+||+.||++|||++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~ 404 (429)
T 3kvw_A 325 ASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPG 404 (429)
T ss_dssp TBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred hhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHH
Confidence 0000000 00001112222222 1234899999999999999999
Q ss_pred HHHHH
Q 001171 1106 DIVFM 1110 (1133)
Q Consensus 1106 evl~~ 1110 (1133)
|++++
T Consensus 405 e~L~H 409 (429)
T 3kvw_A 405 QALRH 409 (429)
T ss_dssp HHHTS
T ss_pred HHhCC
Confidence 99975
No 206
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=348.70 Aligned_cols=255 Identities=14% Similarity=0.173 Sum_probs=203.1
Q ss_pred hcCCCcccccccccceeEEEEE------ECCceEEEEEEcccCCcCHHHHHHHHHHHhhcc---CCCeeeEEEEEeCCCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKAS------YQDGMVLSIRRLRDGTIDENTFRKEAEALGKVK---HRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~------~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~---hpniv~l~~~~~~~~~ 906 (1133)
.++|.+.++||+|+||+||+|. ...++.||||++... ....+.+|++++++++ |+||+.+++++...+.
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~ 141 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA--NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNG 141 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC--CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSC
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC--ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCC
Confidence 4679999999999999999994 346889999999754 4567888999988886 9999999999987644
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC-----------CC
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA-----------DF 975 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~-----------~~ 975 (1133)
.++||||+++|+|.+++...+......+++..+..++.||++||+|||++||+||||||+|||++. ++
T Consensus 142 -~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~ 220 (365)
T 3e7e_A 142 -SVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSA 220 (365)
T ss_dssp -EEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CT
T ss_pred -cEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccC
Confidence 499999999999999998766555567999999999999999999999999999999999999998 89
Q ss_pred ceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHH
Q 001171 976 EAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKK 1055 (1133)
Q Consensus 976 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~ 1055 (1133)
.+||+|||+|+...... .........||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 221 ~~kl~DFG~a~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~------- 292 (365)
T 3e7e_A 221 GLALIDLGQSIDMKLFP-KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE------- 292 (365)
T ss_dssp TEEECCCTTCEEGGGSC-TTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE-------
T ss_pred CEEEeeCchhhhhhccC-CCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc-------
Confidence 99999999997543221 1223345679999999999999999999999999999999999999995432211
Q ss_pred HhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCC-CCHHHHHHHHhcCcC
Q 001171 1056 QLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDR-PSMADIVFMLEGCRV 1116 (1133)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~R-Ps~~evl~~Le~~~~ 1116 (1133)
.......... .....+. +++.+|++.+|.+| |+++++.+.|+.+..
T Consensus 293 --------~~~~~~~~~~-~~~~~~~------~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~ 339 (365)
T 3e7e_A 293 --------CKPEGLFRRL-PHLDMWN------EFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ 339 (365)
T ss_dssp --------EEECSCCTTC-SSHHHHH------HHHHHHHCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred --------eeechhcccc-CcHHHHH------HHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Confidence 0011111111 1112222 56778999999998 678888888877544
No 207
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=6.4e-37 Score=367.55 Aligned_cols=249 Identities=22% Similarity=0.342 Sum_probs=203.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.++||+|+||.||+|.++ +|+.||||++... ....+.+.+|++++++++||||+++++++... ...++
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~l 103 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDK-GYFYL 103 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-CEEEE
Confidence 457999999999999999999876 6899999998543 23467899999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee---CCCCceEEeccCcccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---DADFEAHLSEFGLDRL 987 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~a~~ 987 (1133)
||||+.+|+|.+++... ..+++..+..++.||+.||+|||++||+||||||+||++ +.++.+||+|||+++.
T Consensus 104 v~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 104 VGEVYTGGELFDEIISR-----KRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp EECCCCSCBHHHHHHTC-----SCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 99999999999999763 238899999999999999999999999999999999999 5678999999999975
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
.... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||......+....+.+...... .
T Consensus 179 ~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~-----~ 248 (484)
T 3nyv_A 179 FEAS----KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE-----L 248 (484)
T ss_dssp BCCC----CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCC-----S
T ss_pred cccc----cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCC-----C
Confidence 4322 12233569999999999865 689999999999999999999999987776666555544211100 0
Q ss_pred CCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1068 PGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+ .+..+. ...+++.+||+.||++|||+.|++++
T Consensus 249 ~----------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 249 P----------QWKKVSESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp G----------GGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred c----------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 0 111111 12378999999999999999999964
No 208
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=344.82 Aligned_cols=254 Identities=23% Similarity=0.350 Sum_probs=197.7
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCC-----CCc
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAGP-----PDV 907 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~-----~~~ 907 (1133)
..++|++.+.||+|+||.||+|++. +|+.||+|++.......+.+.+|+++++++ +||||+++++++... ...
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~ 101 (326)
T 2x7f_A 22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ 101 (326)
T ss_dssp CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccce
Confidence 4668999999999999999999874 689999999976666678899999999999 899999999998753 355
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.++||||+++|+|.+++..... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||++..
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 178 (326)
T 2x7f_A 102 LWLVMEFCGAGSVTDLIKNTKG---NTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ 178 (326)
T ss_dssp EEEEEECCTTEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC-
T ss_pred EEEEEEcCCCCcHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCcee
Confidence 6899999999999999987432 3488999999999999999999999999999999999999999999999999865
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccC-----CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAAS-----TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQI 1062 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~ 1062 (1133)
.... ........|++.|+|||++. +..++.++||||+||++|+|++|+.||...........+.. ...
T Consensus 179 ~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~----~~~ 251 (326)
T 2x7f_A 179 LDRT---VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPR----NPA 251 (326)
T ss_dssp ---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH----SCC
T ss_pred cCcC---ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhc----Ccc
Confidence 4221 11223457899999999986 56689999999999999999999999976554443332222 111
Q ss_pred cccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1063 SELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.......+ .. ...+++.+||..||++||++.|++++
T Consensus 252 ~~~~~~~~------~~------~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 252 PRLKSKKW------SK------KFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp CCCSCSCS------CH------HHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ccCCcccc------CH------HHHHHHHHHhccChhhCCCHHHHhhC
Confidence 11111111 11 12378889999999999999999874
No 209
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=2e-36 Score=342.39 Aligned_cols=258 Identities=21% Similarity=0.325 Sum_probs=192.5
Q ss_pred hcCCCcc-cccccccceeEEEEEEC-CceEEEEEEcccCC-cCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEE-NVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT-IDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~-~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++. ++||+|+||.||+|.+. +++.||||++.... ...+.+.+|++++.++ +||||+++++++... +..++|
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~-~~~~lv 89 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEE-DRFYLV 89 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC-CEEEEE
Confidence 3468874 78999999999999764 68999999996543 3357889999999995 799999999999876 455999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc---eEEeccCccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE---AHLSEFGLDRLA 988 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg~a~~~ 988 (1133)
|||+++|+|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.++. +||+|||+++..
T Consensus 90 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~ 164 (316)
T 2ac3_A 90 FEKMRGGSILSHIHKRR-----HFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164 (316)
T ss_dssp EECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred EEcCCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence 99999999999998753 3889999999999999999999999999999999999988776 999999998654
Q ss_pred ccCCCC----CCCCCCCCCCCCccCccccCC-----CCCCCCCchhHHHHHHHHHHhCCCCCccCChhh-----------
Q 001171 989 IATPAE----ASSSTTPIGSLGYVSPEAAST-----GQPTKEADVYSFGIVLLEILTGRKPVMFTQDED----------- 1048 (1133)
Q Consensus 989 ~~~~~~----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~----------- 1048 (1133)
...... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+
T Consensus 165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 244 (316)
T 2ac3_A 165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA 244 (316)
T ss_dssp -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence 322111 112234569999999999864 457899999999999999999999996543211
Q ss_pred HHHHHHHHhhhccccccccCCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1049 IVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
....+.+....... .... ..+..+. ...+++.+|++.||++||+++|++++
T Consensus 245 ~~~~~~~~i~~~~~-~~~~----------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 245 CQNMLFESIQEGKY-EFPD----------KDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp HHHHHHHHHHHCCC-CCCH----------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHHHhccCc-ccCc----------hhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 01111122222111 0000 0000111 12378999999999999999999985
No 210
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-36 Score=343.62 Aligned_cols=268 Identities=19% Similarity=0.261 Sum_probs=199.0
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC------HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID------ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV 907 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~------~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 907 (1133)
..++|++.+.||+|+||.||+|.+. +|+.||||++...... .+.+.+|++++++++||||+++++++.....
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~- 86 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN- 86 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC-
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc-
Confidence 4568999999999999999999875 5899999999643221 2467899999999999999999999987644
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.++||||+++ +|.+++.... ..+++..+..++.|+++||+|||+.||+||||||+||+++.++.+||+|||+++.
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDNS----LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKS 161 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTCC----SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred eEEEEEcCCC-CHHHHHHhcC----cCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence 4999999975 8888887532 3488899999999999999999999999999999999999999999999999875
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
.... ........||+.|+|||++.+. .++.++||||+||++|||++|.+||......+....+.+...........
T Consensus 162 ~~~~---~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 238 (346)
T 1ua2_A 162 FGSP---NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWP 238 (346)
T ss_dssp TTSC---CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSS
T ss_pred ccCC---cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhh
Confidence 4322 1223456789999999998654 47899999999999999999999998777666655555443222111110
Q ss_pred cC----CcCCCCC-CChhHHH----H-HHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1067 EP----GLLELDP-ESSEWEE----F-LLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1067 ~~----~~~~~~~-~~~~~~~----~-~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
+. ....... ....... . ....+++.+|++.||++|||+.|++++-
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~ 293 (346)
T 1ua2_A 239 DMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK 293 (346)
T ss_dssp STTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred hhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence 00 0000000 0000000 0 1223789999999999999999999864
No 211
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=1.4e-36 Score=363.06 Aligned_cols=254 Identities=20% Similarity=0.286 Sum_probs=199.9
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
++|.+.++||+|+||.||+|+++ +|+.||+|++.+.. ...+.+.+|++++++++||||+++++++... ...|+|
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~-~~l~lV 263 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETK-TDLCLV 263 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeC-CEEEEE
Confidence 57889999999999999999885 69999999996432 2346788999999999999999999999876 456999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++|+|.+++...... ...+++..+..++.||+.||+|||++||+||||||+||+++.++++||+|||+++.....
T Consensus 264 mE~~~gg~L~~~l~~~~~~-~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~ 342 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDED-NPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAG 342 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTT-SCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEeccCCCHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCC
Confidence 9999999999999764321 235899999999999999999999999999999999999999999999999999754322
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...........+.+.......
T Consensus 343 ~---~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~--------- 410 (543)
T 3c4z_A 343 Q---TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAV--------- 410 (543)
T ss_dssp C---CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCC---------
T ss_pred C---cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhccc---------
Confidence 1 1233458999999999999999999999999999999999999999764322111222222211111
Q ss_pred CCCCCChhHHHHHHhHhhhhccCCCCCCCCCCH-----HHHHH
Q 001171 1072 ELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSM-----ADIVF 1109 (1133)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~-----~evl~ 1109 (1133)
.++.... ....+++.+||+.||++||++ +|+++
T Consensus 411 ~~p~~~s-----~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 411 TYPDKFS-----PASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp CCCTTSC-----HHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred CCCcccC-----HHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 0010100 112278899999999999965 67764
No 212
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=6e-38 Score=352.62 Aligned_cols=268 Identities=19% Similarity=0.294 Sum_probs=186.3
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhh--ccCCCeeeEEEEEeCCCC---cEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGK--VKHRNLTVLRGYYAGPPD---VRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~--l~hpniv~l~~~~~~~~~---~~~l 910 (1133)
.++|++.+.||+|+||.||+|+++ |+.||||++... ....+.+|.+++.. ++||||+++++++..... ..++
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 78 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T--THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc--chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEE
Confidence 357999999999999999999875 889999998643 35677888998888 799999999999876542 5689
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHh--------cCCceecccCccceeeCCCCceEEecc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLH--------SLDMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH--------~~~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
||||+++|+|.++++.. .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+||
T Consensus 79 v~e~~~~g~L~~~l~~~------~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DF 152 (303)
T 3gxj_A 79 VSDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL 152 (303)
T ss_dssp EEECCTTCCHHHHHHHC------CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCC
T ss_pred EEeccCCCCHHHHHhcc------CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeec
Confidence 99999999999999763 3778889999999999999999 999999999999999999999999999
Q ss_pred CcccccccCCCCC-CCCCCCCCCCCccCccccCCC------CCCCCCchhHHHHHHHHHHhC----------CCCCccCC
Q 001171 983 GLDRLAIATPAEA-SSSTTPIGSLGYVSPEAASTG------QPTKEADVYSFGIVLLEILTG----------RKPVMFTQ 1045 (1133)
Q Consensus 983 g~a~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlG~il~el~tg----------~~Pf~~~~ 1045 (1133)
|+++......... .......||+.|+|||++.+. .++.++|||||||++|||++| +.||....
T Consensus 153 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~ 232 (303)
T 3gxj_A 153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV 232 (303)
T ss_dssp CC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTC
T ss_pred CcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccC
Confidence 9997554332211 122345799999999999766 334689999999999999999 66664321
Q ss_pred hh-hHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1046 DE-DIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1046 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
.. .....+.+..........+...+ ..........+++.+||+.||++||++.|+++.|+.+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~~ 300 (303)
T 3gxj_A 233 PSDPSVEEMRKVVCEQKLRPNIPNRW-------QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300 (303)
T ss_dssp C-CCCCC-CHHHHTTSCCCCCCCGGG-------GSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC--
T ss_pred CCCccHHHHHHHHHHhhcCCCccccc-------cchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhcc
Confidence 11 00011111111111111111100 111222233489999999999999999999999999887553
No 213
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.7e-36 Score=350.60 Aligned_cols=266 Identities=20% Similarity=0.342 Sum_probs=199.7
Q ss_pred HhcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCC---------
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGP--------- 904 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~--------- 904 (1133)
..++|++.++||+|+||+||+|.+ .+|+.||||++.... ....+|++++++++||||+++++++...
T Consensus 5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~---~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~ 81 (383)
T 3eb0_A 5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP---RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQ 81 (383)
T ss_dssp -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT---TSCCHHHHHHTTCCCTTBCCEEEEEEEC---------
T ss_pred ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHHcCCCCccchhheeeecCcccccccc
Confidence 567899999999999999999977 468999999986543 2345799999999999999999988432
Q ss_pred ----------------------------CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 001171 905 ----------------------------PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHS 956 (1133)
Q Consensus 905 ----------------------------~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~ 956 (1133)
....++||||++ |+|.+.+...... ...+++..+..++.||++||+|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~ 159 (383)
T 3eb0_A 82 PPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRS-GRSIPMNLISIYIYQLFRAVGFIHS 159 (383)
T ss_dssp ----------------------------CCEEEEEECCCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223679999997 6888888754322 3458999999999999999999999
Q ss_pred CCceecccCccceeeC-CCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHH
Q 001171 957 LDMVHGDIKPQNVLFD-ADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEI 1034 (1133)
Q Consensus 957 ~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el 1034 (1133)
.||+||||||+||+++ .++.+||+|||+++..... .......||+.|+|||++.+. .++.++||||+||++|||
T Consensus 160 ~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el 235 (383)
T 3eb0_A 160 LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS----EPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGEL 235 (383)
T ss_dssp TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT----SCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHH
T ss_pred CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC----CCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHH
Confidence 9999999999999998 6889999999999754322 223445789999999998765 489999999999999999
Q ss_pred HhCCCCCccCChhhHHHHHHHHhhhcccccc--ccCCcCCC---CCCChhHHHH------HHhHhhhhccCCCCCCCCCC
Q 001171 1035 LTGRKPVMFTQDEDIVKWVKKQLQRGQISEL--LEPGLLEL---DPESSEWEEF------LLGVKVGLLCTAPDPLDRPS 1103 (1133)
Q Consensus 1035 ~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~------~~~~~li~~Cl~~dP~~RPs 1103 (1133)
++|+.||......+....+.+.......... ..+..... ......+... ....+++.+||+.||++|||
T Consensus 236 l~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t 315 (383)
T 3eb0_A 236 ILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRIN 315 (383)
T ss_dssp HHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC
T ss_pred HhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCC
Confidence 9999999877766655555543322211100 00000000 0001111111 11348999999999999999
Q ss_pred HHHHHH
Q 001171 1104 MADIVF 1109 (1133)
Q Consensus 1104 ~~evl~ 1109 (1133)
+.|+++
T Consensus 316 ~~e~l~ 321 (383)
T 3eb0_A 316 PYEAMA 321 (383)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999984
No 214
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.7e-37 Score=339.96 Aligned_cols=249 Identities=20% Similarity=0.342 Sum_probs=178.3
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|.. .+|+.||+|++.... ...+.+.+|++++++++||||+++++++... ...++
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~l 88 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDS-NYVYL 88 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECS-SEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccC-CeEEE
Confidence 45799999999999999999987 468999999986432 1246789999999999999999999999876 45699
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.+++.... ..+++..++.++.|+++|++|||++||+||||||+||+++.++.+||+|||++.....
T Consensus 89 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~ 164 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKNRV----KPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKM 164 (278)
T ss_dssp EEECCTTEEHHHHHHTCS----SCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred EEecCCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence 999999999999997532 3489999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+....+ .. .. .
T Consensus 165 ~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~----~~---~~-----~ 229 (278)
T 3cok_A 165 PH---EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKV----VL---AD-----Y 229 (278)
T ss_dssp ------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----C----CS---SC-----C
T ss_pred CC---CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHH----hh---cc-----c
Confidence 11 1223456899999999999888999999999999999999999999755433322111 00 00 0
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+... . ....+++.+||+.||++||+++|++++
T Consensus 230 -~~~~~~---~--~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 230 -EMPSFL---S--IEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp -CCCTTS---C--HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred -CCcccc---C--HHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 000100 0 112378999999999999999999864
No 215
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=3.5e-36 Score=342.59 Aligned_cols=260 Identities=17% Similarity=0.273 Sum_probs=197.8
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhcc-CCCeeeEEEEEeCC-CCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKVK-HRNLTVLRGYYAGP-PDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-hpniv~l~~~~~~~-~~~~~lV~ 912 (1133)
.++|++.+.||+|+||.||+|.+ .+++.||||++... ..+.+.+|++++++++ ||||+++++++... ....++||
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc--chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 46799999999999999999976 46899999998743 4578999999999997 99999999999863 34568999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC-ceEEeccCcccccccC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF-EAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~ 991 (1133)
||+++++|.++++. +++..+..++.||+.||+|||++||+||||||+||+++.++ .+||+|||+++.....
T Consensus 113 e~~~~~~l~~~~~~--------~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 113 EHVNNTDFKQLYQT--------LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp ECCCCCCHHHHGGG--------CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred eccCchhHHHHHHh--------CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 99999999998854 78889999999999999999999999999999999999777 8999999999754322
Q ss_pred CCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCC-hhhHHHHHHHHhhhccccccccCC
Q 001171 992 PAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQ-DEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.......|+..|+|||++.+ ..++.++||||+||++|||++|+.||.... ..+....+.+........+.++..
T Consensus 185 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 260 (330)
T 3nsz_A 185 ----QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKY 260 (330)
T ss_dssp ----CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred ----CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHh
Confidence 22344578999999999877 668999999999999999999999995332 222222222222111111111100
Q ss_pred cCC-------------------CCCCChhHHHH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1070 LLE-------------------LDPESSEWEEF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1070 ~~~-------------------~~~~~~~~~~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... ...... ...+ ....+++.+|++.||++|||++|++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 261 NIELDPRFNDILGRHSRKRWERFVHSEN-QHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp TCCCCTHHHHHHCCCCCCCGGGGCCTTT-GGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ccccccchhhhhhhccccchhhhccccc-cccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 000 000000 0001 122378999999999999999999974
No 216
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=9.3e-37 Score=344.08 Aligned_cols=267 Identities=20% Similarity=0.321 Sum_probs=196.6
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCc----CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTI----DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|.. .+|+.||+|++..... ..+.+.+|++++++++||||+++++++.... ..++
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~~l 109 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN-ELNI 109 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT-EEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC-cEEE
Confidence 45799999999999999999987 4689999999874321 2456889999999999999999999998764 5599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.+++...... ...+++..++.++.||++||+|||+.||+||||||+||+++.++.+||+|||+++....
T Consensus 110 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~ 188 (310)
T 2wqm_A 110 VLELADAGDLSRMIKHFKKQ-KRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188 (310)
T ss_dssp EEECCCSCBHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred EEecCCCCCHHHHHHHhccc-ccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence 99999999999999764322 24588999999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.. .......|++.|+|||++.+..++.++||||||+++|||++|+.||...... .... .+...............
T Consensus 189 ~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 263 (310)
T 2wqm_A 189 KT---TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN-LYSL-CKKIEQCDYPPLPSDHY 263 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC-HHHH-HHHHHTTCSCCCCTTTS
T ss_pred CC---ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh-HHHH-HHHhhcccCCCCccccc
Confidence 21 1223456899999999999889999999999999999999999999643322 1111 12222222111111100
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCC
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMP 1121 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~ 1121 (1133)
. . ...+++.+||+.||++||++.|+++.|+++......|
T Consensus 264 ------~----~--~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~ 302 (310)
T 2wqm_A 264 ------S----E--ELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS 302 (310)
T ss_dssp ------C----H--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred ------C----H--HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence 0 1 1227888999999999999999999999987655544
No 217
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.2e-36 Score=338.25 Aligned_cols=248 Identities=19% Similarity=0.339 Sum_probs=201.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc----CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI----DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|.+.+.||+|+||.||+|.+. +++.||+|++..... ..+.+.+|++++++++||||+++++++... +..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~l 92 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN-DFVFV 92 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccC-CEEEE
Confidence 468999999999999999999876 588999999865322 245788999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.+++.... .+++..+..++.|+++|++|||++||+||||||+||+++.++.+||+|||+++....
T Consensus 93 v~e~~~~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 167 (294)
T 2rku_A 93 VLELCRRRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY 167 (294)
T ss_dssp EEECCTTCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceeccc
Confidence 999999999999987643 388999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
. ........|++.|+|||++.+..++.++||||+|+++|||++|+.||......+....+.. ...
T Consensus 168 ~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~----~~~-------- 232 (294)
T 2rku_A 168 D---GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKK----NEY-------- 232 (294)
T ss_dssp T---TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHT----TCC--------
T ss_pred C---ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhh----ccC--------
Confidence 1 1223345789999999999988899999999999999999999999976655444333221 110
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+.... . ...+++.+||+.||++||++.|++++
T Consensus 233 -~~~~~~~---~--~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 233 -SIPKHIN---P--VAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp -CCCTTSC---H--HHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred -CCccccC---H--HHHHHHHHHcccChhhCcCHHHHhhC
Confidence 0000000 1 12378899999999999999999975
No 218
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1.4e-36 Score=346.17 Aligned_cols=249 Identities=19% Similarity=0.332 Sum_probs=203.1
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
..++|.+.+.||+|+||.||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++.+. +..+
T Consensus 39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~ 117 (335)
T 2owb_A 39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN-DFVF 117 (335)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEE
T ss_pred cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC-CeEE
Confidence 3568999999999999999999876 57899999986432 1246788999999999999999999999876 4569
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||||+++++|.+++.... .+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++...
T Consensus 118 lv~e~~~~~~L~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 192 (335)
T 2owb_A 118 VVLELCRRRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 192 (335)
T ss_dssp EEECCCTTCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEecCCCCCHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence 9999999999999987643 38899999999999999999999999999999999999999999999999987543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
.. ........|++.|+|||++.+..++.++|||||||++|||++|+.||......+....+... ...++.
T Consensus 193 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~--~~~~~~----- 262 (335)
T 2owb_A 193 YD---GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN--EYSIPK----- 262 (335)
T ss_dssp ST---TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHT--CCCCCT-----
T ss_pred cC---cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcC--CCCCCc-----
Confidence 22 12234457999999999998888999999999999999999999999766655444333221 111110
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... . ...+++.+||+.||++||++.|++++
T Consensus 263 ------~~~---~--~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 263 ------HIN---P--VAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp ------TSC---H--HHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ------cCC---H--HHHHHHHHHccCChhHCcCHHHHhcC
Confidence 000 0 12378899999999999999999974
No 219
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=6.8e-37 Score=339.56 Aligned_cols=259 Identities=20% Similarity=0.306 Sum_probs=204.8
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeC-CCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAG-PPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|... +|+.||+|++...... .+.+.+|++++++++||||+++++++.. .....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 457999999999999999999875 6899999999754432 4568899999999999999999998753 3456689
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC-----ceecccCccceeeCCCCceEEeccCcc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD-----MVHGDIKPQNVLFDADFEAHLSEFGLD 985 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~-----ivH~Dlkp~NIll~~~~~~kl~Dfg~a 985 (1133)
||||+++++|.+++...... ...+++..++.++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||.+
T Consensus 85 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~ 163 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKE-RQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHH
T ss_pred EEeCCCCCCHHHHHHhhccc-CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchh
Confidence 99999999999999875432 244899999999999999999999999 999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 986 RLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 986 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
+...... .......|++.|+|||++.+..++.++||||+|+++|||++|+.||......+....+... .....
T Consensus 164 ~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~----~~~~~ 236 (279)
T 2w5a_A 164 RILNHDT---SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREG----KFRRI 236 (279)
T ss_dssp HHC---C---HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT----CCCCC
T ss_pred eeecccc---ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhc----ccccC
Confidence 7542211 1112346889999999998888999999999999999999999999876665554444332 11111
Q ss_pred ccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1066 LEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
.. .. .. ...+++.+||+.||++||++.|+++++..-.
T Consensus 237 -~~-------~~---~~--~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~ 273 (279)
T 2w5a_A 237 -PY-------RY---SD--ELNEIITRMLNLKDYHRPSVEEILENPLILE 273 (279)
T ss_dssp -CT-------TS---CH--HHHHHHHHHTCSSGGGSCCHHHHHTSTTCCG
T ss_pred -Cc-------cc---CH--HHHHHHHHHcCCCcccCCCHHHHHhChhhhh
Confidence 00 00 01 1237889999999999999999998776543
No 220
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=2.6e-36 Score=334.27 Aligned_cols=247 Identities=21% Similarity=0.305 Sum_probs=193.6
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|.+.+.||+|+||.||+|.++ +|+.||+|++.... ...+.+.+|++++++++||||+++++++... ...++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~l 88 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTP-TDFFM 88 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecC-CeEEE
Confidence 357999999999999999999886 68999999985422 2346789999999999999999999999876 45599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.++.++|+|||++.....
T Consensus 89 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~ 163 (276)
T 2h6d_A 89 VMEYVSGGELFDYICKHG-----RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 163 (276)
T ss_dssp EEECCCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC
T ss_pred EEeccCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCC
Confidence 999999999999998653 378999999999999999999999999999999999999999999999999865422
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
. .......|++.|+|||++.+..+ +.++||||+|+++|+|++|+.||...........+.... ... .
T Consensus 164 ~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~----~-- 231 (276)
T 2h6d_A 164 G----EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGV--FYI----P-- 231 (276)
T ss_dssp -----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC--CCC----C--
T ss_pred C----cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCc--ccC----c--
Confidence 1 12234568999999999987765 689999999999999999999997766555444433211 000 0
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... ....+++.+|++.||++||++.|++++
T Consensus 232 -----~~~~-----~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 232 -----EYLN-----RSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp -----TTSC-----HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred -----hhcC-----HHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 0000 112378899999999999999999985
No 221
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=1.9e-36 Score=340.36 Aligned_cols=251 Identities=21% Similarity=0.364 Sum_probs=200.5
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
..++|.+.+.||+|+||.||+|+.. +|+.||+|++..... ..+.+.+|++++++++||||+++++++... ...++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~ 85 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYEST-THYYLVM 85 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccC-CEEEEEE
Confidence 3467999999999999999999875 689999999975432 345788999999999999999999999876 4559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee---CCCCceEEeccCcccccc
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---DADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~ 989 (1133)
||+++++|.+++...+ .+++..+..++.|++.||+|||+.||+||||||+||++ +.++.++|+|||+++...
T Consensus 86 e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 86 QLVSGGELFDRILERG-----VYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp CCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred EcCCCccHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 9999999999997643 37899999999999999999999999999999999999 788999999999986431
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCC
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPG 1069 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1133)
. .......|++.|+|||++.+..++.++||||+||++|||++|+.||...........+.+.... ...+.
T Consensus 161 ~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~-----~~~~~ 230 (304)
T 2jam_A 161 N-----GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYE-----FESPF 230 (304)
T ss_dssp C-----BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCC-----CCTTT
T ss_pred C-----CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCC-----CCccc
Confidence 1 1122346899999999999989999999999999999999999999876665555444332110 00000
Q ss_pred cCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1070 LLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... .. ....+++.+|++.||++||++.|++++
T Consensus 231 ~~~---~~------~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 231 WDD---IS------ESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp TTT---SC------HHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred ccc---CC------HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 000 00 112378999999999999999999974
No 222
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=2.9e-36 Score=350.99 Aligned_cols=270 Identities=21% Similarity=0.310 Sum_probs=200.0
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCC-----CcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPP-----DVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-----~~~~l 910 (1133)
..+|++.++||+|+||+||+|++..+..||+|++..... ...+|+++++.++||||+++++++.... ...++
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~---~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR---FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT---SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc---hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 347999999999999999999997777799999865432 2347999999999999999999985432 23579
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC-CCCceEEeccCcccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD-ADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~ 989 (1133)
||||++++ +.+.+...... ...+++..+..++.||++||+|||++||+||||||+||+++ .++.+||+|||+++...
T Consensus 116 v~e~~~~~-l~~~~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~ 193 (394)
T 4e7w_A 116 VLEYVPET-VYRASRHYAKL-KQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILI 193 (394)
T ss_dssp EEECCSEE-HHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred EeeccCcc-HHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCccccc
Confidence 99999764 44444332211 24589999999999999999999999999999999999999 79999999999997653
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc-----
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS----- 1063 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~----- 1063 (1133)
.. .......||+.|+|||++.+. .++.++||||+||++|||++|+.||...+..+....+.+........
T Consensus 194 ~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~ 269 (394)
T 4e7w_A 194 AG----EPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTM 269 (394)
T ss_dssp TT----CCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred CC----CCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhh
Confidence 22 223345789999999998664 58999999999999999999999998777666555554432221110
Q ss_pred --ccccCCcCCCCCCChhHHHH------HHhHhhhhccCCCCCCCCCCHHHHHHH--HhcCcC
Q 001171 1064 --ELLEPGLLELDPESSEWEEF------LLGVKVGLLCTAPDPLDRPSMADIVFM--LEGCRV 1116 (1133)
Q Consensus 1064 --~~~~~~~~~~~~~~~~~~~~------~~~~~li~~Cl~~dP~~RPs~~evl~~--Le~~~~ 1116 (1133)
............ ..+... ....+++.+||+.||++||++.|++++ ++++..
T Consensus 270 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~ 330 (394)
T 4e7w_A 270 NPNYMEHKFPQIRP--HPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRT 330 (394)
T ss_dssp CGGGSSSCCCCCCC--CCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTS
T ss_pred ChhhhhhccccccC--CcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhcc
Confidence 011111111000 011110 123489999999999999999999986 555444
No 223
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=7.1e-37 Score=346.24 Aligned_cols=268 Identities=20% Similarity=0.276 Sum_probs=201.9
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCC-cCHHHHHHHHHHHhhccCCCeeeEEEEEeC---CCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGT-IDENTFRKEAEALGKVKHRNLTVLRGYYAG---PPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~---~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|++++++++||||+++++++.. .....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 45899999999999999999987 568999999986432 235678899999999999999999999862 2345689
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++|+|.+++...... ...+++..++.++.||++||+|||+.+|+||||||+||+++.++.+||+|||+++....
T Consensus 108 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~ 186 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDK-GNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACI 186 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESCE
T ss_pred EEEeCCCCcHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhccc
Confidence 99999999999999875332 34589999999999999999999999999999999999999999999999998864321
Q ss_pred CCCCC------CCCCCCCCCCCccCccccCCCC---CCCCCchhHHHHHHHHHHhCCCCCccCC--hhhHHHHHHHHhhh
Q 001171 991 TPAEA------SSSTTPIGSLGYVSPEAASTGQ---PTKEADVYSFGIVLLEILTGRKPVMFTQ--DEDIVKWVKKQLQR 1059 (1133)
Q Consensus 991 ~~~~~------~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlG~il~el~tg~~Pf~~~~--~~~~~~~~~~~~~~ 1059 (1133)
..... .......||+.|+|||++.+.. ++.++|||||||++|||++|+.||.... .......+.. .
T Consensus 187 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~---~ 263 (317)
T 2buj_A 187 HVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQN---Q 263 (317)
T ss_dssp EEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHC---C
T ss_pred ccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhc---c
Confidence 11100 0012235789999999987554 6899999999999999999999995311 1111111111 0
Q ss_pred ccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCC
Q 001171 1060 GQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMP 1121 (1133)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~ 1121 (1133)
... +... ... . ...+++.+||+.||.+||++.|++++|+.+......+
T Consensus 264 ~~~-----~~~~---~~~----~--~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~ 311 (317)
T 2buj_A 264 LSI-----PQSP---RHS----S--ALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ 311 (317)
T ss_dssp --C-----CCCT---TSC----H--HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC-
T ss_pred CCC-----Cccc---cCC----H--HHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCC
Confidence 000 0000 001 1 1237889999999999999999999999987644443
No 224
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=343.37 Aligned_cols=243 Identities=19% Similarity=0.306 Sum_probs=196.4
Q ss_pred HHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---------CHHHHHHHHHHHhhccCCCeeeEEEEEeC
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---------DENTFRKEAEALGKVKHRNLTVLRGYYAG 903 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 903 (1133)
...++|++.+.||+|+||.||+|.+. +++.||||++..... ..+.+.+|++++++++||||+++++++..
T Consensus 21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 35678999999999999999999764 689999999975432 23457789999999999999999999987
Q ss_pred CCCcEEEEEeccCCC-CHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEecc
Q 001171 904 PPDVRLLVYDYMPNG-NLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 904 ~~~~~~lV~e~~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
. ...++||||+.+| +|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+||
T Consensus 101 ~-~~~~lv~e~~~~g~~l~~~~~~~~-----~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Df 174 (335)
T 3dls_A 101 Q-GFFQLVMEKHGSGLDLFAFIDRHP-----RLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDF 174 (335)
T ss_dssp S-SEEEEEEECCTTSCBHHHHHHTCC-----CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCC
T ss_pred C-CEEEEEEEeCCCCccHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeec
Confidence 6 4558999999777 9999998643 3899999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcc
Q 001171 983 GLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQ 1061 (1133)
Q Consensus 983 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~ 1061 (1133)
|+++..... .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||......
T Consensus 175 g~a~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-------------- 236 (335)
T 3dls_A 175 GSAAYLERG----KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-------------- 236 (335)
T ss_dssp TTCEECCTT----CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG--------------
T ss_pred ccceECCCC----CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH--------------
Confidence 999754322 12234569999999999988776 78899999999999999999999642110
Q ss_pred ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1062 ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
............. ...+++.+||+.||++||++.|++++
T Consensus 237 ----~~~~~~~~~~~~~------~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 ----VEAAIHPPYLVSK------ELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ----TTTCCCCSSCCCH------HHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ----HhhccCCCcccCH------HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000000000111 12378889999999999999999986
No 225
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=335.81 Aligned_cols=252 Identities=21% Similarity=0.253 Sum_probs=197.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC-----cCHHHHHHHHHHHhhccCCCeeeEEEEEeC-CCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT-----IDENTFRKEAEALGKVKHRNLTVLRGYYAG-PPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~~~~ 908 (1133)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++.. .....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 468999999999999999999875 68999999986432 234678999999999999999999999853 33456
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||++++ +.+++.... ...+++..+..++.||++||+|||++||+||||||+||+++.++.+|++|||.++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~---~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVP---EKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHST---TCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCc---ccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999876 777777543 245899999999999999999999999999999999999999999999999998754
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCC--CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQP--TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
..... ........|++.|+|||++.+... +.++||||+||++|||++|+.||...........+.+. ... +
T Consensus 160 ~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~----~~~--~ 232 (305)
T 2wtk_C 160 HPFAA-DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKG----SYA--I 232 (305)
T ss_dssp CTTCS-SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHC----CCC--C
T ss_pred Ccccc-ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcC----CCC--C
Confidence 32211 122334568999999999876443 77999999999999999999999876655544443321 110 0
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... ... ...+++.+||+.||++||++.|++++
T Consensus 233 ~~~------~~~------~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 233 PGD------CGP------PLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp CSS------SCH------HHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred CCc------cCH------HHHHHHHHHccCChhhCCCHHHHhcC
Confidence 000 011 12278889999999999999999975
No 226
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=7e-36 Score=352.22 Aligned_cols=200 Identities=22% Similarity=0.324 Sum_probs=164.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCC----Cc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPP----DV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~----~~ 907 (1133)
.++|++.++||+|+||.||+|.++ +|+.||||++...... .+.+.+|++++++++||||+++++++.... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999875 5899999999754332 467889999999999999999999987543 45
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.|+||||++ |+|.+++... ..+++..+..++.||++||+|||+.||+||||||+||+++.++.+||+|||+++.
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~-----~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~ 178 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP-----IFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLART 178 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS-----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEEecCC-cCHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence 699999995 6999999753 3489999999999999999999999999999999999999999999999999976
Q ss_pred cccCCCC-------------------CCCCCCCCCCCCccCcccc-CCCCCCCCCchhHHHHHHHHHHhCCCCC
Q 001171 988 AIATPAE-------------------ASSSTTPIGSLGYVSPEAA-STGQPTKEADVYSFGIVLLEILTGRKPV 1041 (1133)
Q Consensus 988 ~~~~~~~-------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlG~il~el~tg~~Pf 1041 (1133)
....... .......+||+.|+|||++ .+..++.++||||+||++|||++|..||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 5432211 0123566899999999986 5667999999999999999999854444
No 227
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=2.1e-36 Score=349.10 Aligned_cols=271 Identities=20% Similarity=0.277 Sum_probs=203.0
Q ss_pred HHHHHHHhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC------------HHHHHHHHHHHhhccCCCeee
Q 001171 829 YVETLEATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID------------ENTFRKEAEALGKVKHRNLTV 896 (1133)
Q Consensus 829 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~------------~~~~~~E~~~l~~l~hpniv~ 896 (1133)
..+.....++|++.+.||+|+||.||+|...+|+.||||++...... .+.+.+|++++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 44566778999999999999999999999888999999998543221 267899999999999999999
Q ss_pred EEEEEeCC----CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC
Q 001171 897 LRGYYAGP----PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD 972 (1133)
Q Consensus 897 l~~~~~~~----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~ 972 (1133)
+++++... ....++||||++ |+|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~ 168 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR----IVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLA 168 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEc
Confidence 99998532 235689999997 68888887532 3489999999999999999999999999999999999999
Q ss_pred CCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHH
Q 001171 973 ADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVK 1051 (1133)
Q Consensus 973 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~ 1051 (1133)
.++.+||+|||+++.... ........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||......+...
T Consensus 169 ~~~~~kl~Dfg~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~ 244 (362)
T 3pg1_A 169 DNNDITICDFNLAREDTA----DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLN 244 (362)
T ss_dssp TTCCEEECCTTC-------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred CCCCEEEEecCccccccc----ccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 999999999999864322 122334578999999999876 678999999999999999999999998777666665
Q ss_pred HHHHHhhhccccc-----------cccCCcCCCCCCChhHHHH-----HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1052 WVKKQLQRGQISE-----------LLEPGLLELDPESSEWEEF-----LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1052 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+.+......... ............ .+... ....+++.+|++.||++|||+.|++++
T Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPAR--AWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH 317 (362)
T ss_dssp HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCC--CHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChh--hHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence 5554433222111 111111111100 01111 112378999999999999999999975
No 228
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.4e-36 Score=345.38 Aligned_cols=261 Identities=23% Similarity=0.365 Sum_probs=202.8
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceE--EEEEEcccCC--cCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMV--LSIRRLRDGT--IDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~--vavK~~~~~~--~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~ 909 (1133)
.++|++.+.||+|+||.||+|+++ +|.. ||+|++.... ...+.+.+|+++++++ +||||+++++++... ...+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~-~~~~ 102 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-GYLY 102 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET-TEEE
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeC-CceE
Confidence 367999999999999999999764 4654 4999886432 2346789999999999 899999999999876 4559
Q ss_pred EEEeccCCCCHHHHHHhhcc-----------CCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceE
Q 001171 910 LVYDYMPNGNLATLLQEASH-----------QDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAH 978 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~k 978 (1133)
+||||+++|+|.+++...+. .....+++..++.++.||++||+|||++||+||||||+||+++.++.+|
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~k 182 (327)
T 1fvr_A 103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAK 182 (327)
T ss_dssp EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEE
T ss_pred EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEE
Confidence 99999999999999986531 1224589999999999999999999999999999999999999999999
Q ss_pred EeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHh
Q 001171 979 LSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQL 1057 (1133)
Q Consensus 979 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~ 1057 (1133)
|+|||+++.... ........+++.|+|||++.+..++.++||||+||++|||++ |+.||......+....+...
T Consensus 183 L~Dfg~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~- 257 (327)
T 1fvr_A 183 IADFGLSRGQEV----YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQG- 257 (327)
T ss_dssp ECCTTCEESSCE----ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGT-
T ss_pred EcccCcCccccc----cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcC-
Confidence 999999863211 122233457889999999988888999999999999999998 99999776655444332221
Q ss_pred hhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCC
Q 001171 1058 QRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGP 1118 (1133)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~ 1118 (1133)
.... .+.... ....+++.+||+.||++||++.|++++|+.+....
T Consensus 258 ---~~~~--------~~~~~~-----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 258 ---YRLE--------KPLNCD-----DEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER 302 (327)
T ss_dssp ---CCCC--------CCTTBC-----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred ---CCCC--------CCCCCC-----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence 0000 000000 11237889999999999999999999998766544
No 229
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2.9e-36 Score=373.02 Aligned_cols=248 Identities=22% Similarity=0.319 Sum_probs=203.4
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccC----CcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDG----TIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~----~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~ 908 (1133)
..++|++.++||+|+||.||+|+++ +++.||||++.+. ....+.+..|.+++..+ +||+|+.+++++.+. +..
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~-~~~ 417 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM-DRL 417 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCS-SEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeC-CEE
Confidence 4568999999999999999999875 5889999998642 22346778899999988 799999999998875 455
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
|+||||+++|+|.++++..+ .+++..+..++.||+.||+|||++||+||||||+|||++.++++||+|||+++..
T Consensus 418 ~lV~E~~~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~ 492 (674)
T 3pfq_A 418 YFVMEYVNGGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 492 (674)
T ss_dssp EEEEECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred EEEEeCcCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence 99999999999999998754 3889999999999999999999999999999999999999999999999999753
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccC
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEP 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1133)
... .......+||+.|+|||++.+..++.++|||||||++|||++|+.||...+..++...+... ...++
T Consensus 493 ~~~---~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~--~~~~p----- 562 (674)
T 3pfq_A 493 IWD---GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEH--NVAYP----- 562 (674)
T ss_dssp CCT---TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSS--CCCCC-----
T ss_pred ccC---CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhC--CCCCC-----
Confidence 222 22344568999999999999999999999999999999999999999877766655554331 11111
Q ss_pred CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCH-----HHHHH
Q 001171 1069 GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSM-----ADIVF 1109 (1133)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~-----~evl~ 1109 (1133)
.... ....+++.+||+.||++||++ +||++
T Consensus 563 ------~~~s-----~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 563 ------KSMS-----KEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp ------TTSC-----HHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred ------ccCC-----HHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 1100 112378999999999999997 77774
No 230
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=345.89 Aligned_cols=263 Identities=21% Similarity=0.351 Sum_probs=198.4
Q ss_pred HhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCc---CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI---DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
..++|++.+.||+|+||.||+|.++. .||+|++..... ..+.+.+|++++++++||||+++++++.... ..++|
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~iv 107 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP-HLAII 107 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS-CEEEE
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC-ceEEE
Confidence 35689999999999999999998864 489998864322 2356788999999999999999999998764 45999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++++|.+++...+ ..+++..+..++.||+.||+|||++||+||||||+||+++ ++.+||+|||+++.....
T Consensus 108 ~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~ 182 (319)
T 2y4i_B 108 TSLCKGRTLYSVVRDAK----IVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVL 182 (319)
T ss_dssp CBCCCSEEHHHHTTSSC----CCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC-----
T ss_pred eecccCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccccccc
Confidence 99999999999997532 3488999999999999999999999999999999999998 689999999998654321
Q ss_pred CC--CCCCCCCCCCCCCccCccccCC---------CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhc
Q 001171 992 PA--EASSSTTPIGSLGYVSPEAAST---------GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRG 1060 (1133)
Q Consensus 992 ~~--~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 1060 (1133)
.. .........|++.|+|||++.+ ..++.++|||||||++|||++|+.||...........+...
T Consensus 183 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~---- 258 (319)
T 2y4i_B 183 QAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTG---- 258 (319)
T ss_dssp -----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTT----
T ss_pred cccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccC----
Confidence 11 1222334568999999999864 34788999999999999999999999876665544433222
Q ss_pred cccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCCC
Q 001171 1061 QISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDMP 1121 (1133)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~~ 1121 (1133)
.......... . . ...+++.+||+.||++||++.|+++.|+.+.......
T Consensus 259 ~~~~~~~~~~---~---~------~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~ 307 (319)
T 2y4i_B 259 MKPNLSQIGM---G---K------EISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRL 307 (319)
T ss_dssp CCCCCCCSSC---C---T------THHHHHHHHHCSSTTTSCCHHHHHHHHTTC-------
T ss_pred CCCCCCcCCC---C---H------HHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 1111111111 0 1 1227888999999999999999999999988765443
No 231
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=351.21 Aligned_cols=271 Identities=18% Similarity=0.258 Sum_probs=185.2
Q ss_pred cCCCc-ccccccccceeEEEEEEC---CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeC-CCCcEEEE
Q 001171 837 RQFDE-ENVLSRGRYGLIFKASYQ---DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAG-PPDVRLLV 911 (1133)
Q Consensus 837 ~~~~~-~~~lg~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~~~~~lV 911 (1133)
+.|++ +++||+|+||.||+|+++ +++.||||++..... ...+.+|++++++++||||+++++++.. .....++|
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv 98 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL 98 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence 34665 568999999999999875 578999999975443 4578899999999999999999999853 34566899
Q ss_pred EeccCCCCHHHHHHhhccC----CCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee----CCCCceEEeccC
Q 001171 912 YDYMPNGNLATLLQEASHQ----DGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF----DADFEAHLSEFG 983 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~----~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll----~~~~~~kl~Dfg 983 (1133)
|||++ |+|.+++...... ....+++..++.++.||+.||+|||+.||+||||||+|||+ +.++.+||+|||
T Consensus 99 ~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 177 (405)
T 3rgf_A 99 FDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMG 177 (405)
T ss_dssp EECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTT
T ss_pred EeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECC
Confidence 99995 6888888654321 11248899999999999999999999999999999999999 678899999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChh---------hHHHHH
Q 001171 984 LDRLAIATPAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDE---------DIVKWV 1053 (1133)
Q Consensus 984 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~---------~~~~~~ 1053 (1133)
+++................||+.|+|||++.+. .++.++||||+||++|||++|+.||...... +....+
T Consensus 178 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i 257 (405)
T 3rgf_A 178 FARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRI 257 (405)
T ss_dssp CCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHH
T ss_pred CceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHH
Confidence 997654332222334456799999999999774 5899999999999999999999999654331 223333
Q ss_pred HHHhhhccccccccCCcCCCCC-------------CChhHHH---------HHHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1054 KKQLQRGQISELLEPGLLELDP-------------ESSEWEE---------FLLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---------~~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
............ +....... ....... -....+++.+||+.||++|||++|++++=
T Consensus 258 ~~~~g~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp 335 (405)
T 3rgf_A 258 FNVMGFPADKDW--EDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDP 335 (405)
T ss_dssp HHHHCCCCTTTC--GGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred HHhhCCCChhhc--chhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence 322221110000 00000000 0000000 01223789999999999999999999864
No 232
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=7.3e-36 Score=334.89 Aligned_cols=264 Identities=22% Similarity=0.353 Sum_probs=201.1
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
++|++.+.||+|+||.||+|+.+ +|+.||||++..... ..+.+.+|++++++++||||+++++++... +..++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~ 81 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE-NKLYLVF 81 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecC-CceEEEE
Confidence 57999999999999999999876 689999999865432 236788999999999999999999999876 4459999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||++ ++|.+++..... ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||.++......
T Consensus 82 e~~~-~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 82 EFLH-QDLKKFMDASAL---TGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp ECCS-EEHHHHHHHTTT---TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred Eccc-CCHHHHHHhhhc---cCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 9996 699999987532 237889999999999999999999999999999999999999999999999987543221
Q ss_pred CCCCCCCCCCCCCCccCccccCCCC-CCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcC
Q 001171 993 AEASSSTTPIGSLGYVSPEAASTGQ-PTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLL 1071 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1133)
.......||+.|+|||++.+.. ++.++||||+||++|||++|+.||...+..+....+.+..... .+...+...
T Consensus 158 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 232 (299)
T 2r3i_A 158 ---RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTP--DEVVWPGVT 232 (299)
T ss_dssp ---BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC--CTTTSTTGG
T ss_pred ---cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCC--chhhhhHhh
Confidence 2223456899999999997765 7999999999999999999999998776655554444432221 111100000
Q ss_pred -------CCCC-CChhHHH----H-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1072 -------ELDP-ESSEWEE----F-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1072 -------~~~~-~~~~~~~----~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+.. ....... + ....+++.+|++.||++||++.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~h 284 (299)
T 2r3i_A 233 SMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 284 (299)
T ss_dssp GSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 0000 0000110 0 112378999999999999999999973
No 233
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=1.4e-36 Score=356.38 Aligned_cols=251 Identities=19% Similarity=0.300 Sum_probs=189.1
Q ss_pred HHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---------CHHHHHHHHHHHhhccCCCeeeEEEEEeC
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---------DENTFRKEAEALGKVKHRNLTVLRGYYAG 903 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 903 (1133)
...++|.+.+.||+|+||.||+|.++ +++.||||++..... ....+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 35678999999999999999999775 589999999864321 12357899999999999999999999865
Q ss_pred CCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCC---ceEEe
Q 001171 904 PPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADF---EAHLS 980 (1133)
Q Consensus 904 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~ 980 (1133)
. ..++||||+++|+|.+++... ..+++..+..++.||+.||+|||++||+||||||+||+++.++ .+||+
T Consensus 212 ~--~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 212 E--DYYIVLELMEGGELFDKVVGN-----KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp S--EEEEEEECCTTCBGGGGTSSS-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred C--ceEEEEEcCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEe
Confidence 4 358999999999998887643 3489999999999999999999999999999999999997544 59999
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCccCccccCC---CCCCCCCchhHHHHHHHHHHhCCCCCccCChh-hHHHHHHHH
Q 001171 981 EFGLDRLAIATPAEASSSTTPIGSLGYVSPEAAST---GQPTKEADVYSFGIVLLEILTGRKPVMFTQDE-DIVKWVKKQ 1056 (1133)
Q Consensus 981 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~-~~~~~~~~~ 1056 (1133)
|||+++.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... .....+..
T Consensus 285 DFG~a~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~- 359 (419)
T 3i6u_A 285 DFGHSKILGE----TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS- 359 (419)
T ss_dssp CSSTTTSCC---------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHT-
T ss_pred ecccceecCC----CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhc-
Confidence 9999975422 122344679999999999853 56788999999999999999999999754332 22222221
Q ss_pred hhhccccccccCCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1057 LQRGQISELLEPGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..... .. ..+..+. ...+++.+||+.||++||+++|++++
T Consensus 360 ---~~~~~-~~----------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 360 ---GKYNF-IP----------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp ---TCCCC-CH----------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred ---CCCCC-Cc----------hhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 11100 00 0001111 12378999999999999999999875
No 234
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-36 Score=348.46 Aligned_cols=254 Identities=22% Similarity=0.356 Sum_probs=198.2
Q ss_pred hcCCCcccccccccceeEEEEEE----CCceEEEEEEcccCC-----cCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY----QDGMVLSIRRLRDGT-----IDENTFRKEAEALGKV-KHRNLTVLRGYYAGPP 905 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~~~~~~-----~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~ 905 (1133)
.++|++.++||+|+||.||+|+. .+|+.||||++.... ...+.+.+|+++++++ +||||+++++++...
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~- 131 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE- 131 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET-
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC-
Confidence 36899999999999999999987 368999999986432 2345678899999999 699999999998775
Q ss_pred CcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcc
Q 001171 906 DVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLD 985 (1133)
Q Consensus 906 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 985 (1133)
...++||||+++|+|.+++.... .+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||++
T Consensus 132 ~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a 206 (355)
T 1vzo_A 132 TKLHLILDYINGGELFTHLSQRE-----RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206 (355)
T ss_dssp TEEEEEECCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred ceEEEEeecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCC
Confidence 44589999999999999998643 3889999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCccCccccCCC--CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc
Q 001171 986 RLAIATPAEASSSTTPIGSLGYVSPEAASTG--QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 986 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~ 1063 (1133)
+...... ........||+.|+|||++.+. .++.++|||||||++|||++|+.||...........+.+.......
T Consensus 207 ~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~- 283 (355)
T 1vzo_A 207 KEFVADE--TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP- 283 (355)
T ss_dssp EECCGGG--GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC-
T ss_pred eecccCC--CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCC-
Confidence 7543221 1223345799999999999753 4789999999999999999999999754332222222222211110
Q ss_pred ccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCC-----CHHHHHHHH
Q 001171 1064 ELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRP-----SMADIVFML 1111 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RP-----s~~evl~~L 1111 (1133)
. .+... .. ...+++.+||+.||++|| ++.|++++.
T Consensus 284 -----~---~~~~~---~~--~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 284 -----P---YPQEM---SA--LAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 323 (355)
T ss_dssp -----C---CCTTS---CH--HHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred -----C---CCccc---CH--HHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence 0 00110 01 123789999999999999 999999765
No 235
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=9.2e-36 Score=344.32 Aligned_cols=262 Identities=19% Similarity=0.231 Sum_probs=193.3
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCC-----C
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPP-----D 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-----~ 906 (1133)
.++|++.+.||+|+||.||+|... +++.||||++...... .+.+.+|++++++++||||+++++++.... .
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 458999999999999999999775 6899999999754332 356789999999999999999999997643 2
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
..++||||++ |+|.+++.. .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 175 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM-------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred ceEEEEEcCC-CCHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccc
Confidence 5689999996 578888752 27889999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+....+.+..... .++..
T Consensus 176 ~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~-~~~~~ 250 (371)
T 2xrw_A 176 TAGTS----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP-CPEFM 250 (371)
T ss_dssp ------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCC-CHHHH
T ss_pred ccccc----cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC-CHHHH
Confidence 54221 12334578999999999999899999999999999999999999998766655444433221110 00000
Q ss_pred -------------cCCcC-----------CCCCCChhHHHH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 -------------EPGLL-----------ELDPESSEWEEF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 -------------~~~~~-----------~~~~~~~~~~~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+... ..+......... ....+++.+|++.||++|||++|++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 00000 000111111111 223489999999999999999999975
No 236
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=6.1e-36 Score=351.16 Aligned_cols=266 Identities=23% Similarity=0.348 Sum_probs=197.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCC-----CCcEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGP-----PDVRL 909 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~-----~~~~~ 909 (1133)
..+|++.++||+|+||.||+|++. +|+.||||++.... ....+|++++++++|||||++++++... ....+
T Consensus 53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK---RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT---TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc---hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 346899999999999999999885 58999999986543 2345799999999999999999988431 12346
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC-CceEEeccCccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD-FEAHLSEFGLDRLA 988 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~-~~~kl~Dfg~a~~~ 988 (1133)
+||||+++ ++.+.+...... ...+++..+..++.||++||+|||++||+||||||+|||++.+ +.+||+|||+++..
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~ 207 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRA-KQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL 207 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred eehhcccc-cHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhc
Confidence 89999964 677766543221 2458999999999999999999999999999999999999965 56899999999754
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc--
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL-- 1065 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-- 1065 (1133)
... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||...+..+....+.+.........+
T Consensus 208 ~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~ 283 (420)
T 1j1b_A 208 VRG----EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIRE 283 (420)
T ss_dssp CTT----CCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHH
T ss_pred ccC----CCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence 322 223345789999999998764 6899999999999999999999999877665544444443221110000
Q ss_pred ccCCcCCCC---CCChhHHHH------HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 LEPGLLELD---PESSEWEEF------LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~~~~~~~---~~~~~~~~~------~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+...++. .....|... ....+++.+||+.||++||++.|++++
T Consensus 284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 011111100 001112111 123489999999999999999999964
No 237
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=8.3e-36 Score=338.92 Aligned_cols=269 Identities=23% Similarity=0.313 Sum_probs=205.8
Q ss_pred HhcCCCcccccccccceeEEEEEE--CCceEEEEEEcccCCc---CHHHHHHHHHHHhhc---cCCCeeeEEEEEe----
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY--QDGMVLSIRRLRDGTI---DENTFRKEAEALGKV---KHRNLTVLRGYYA---- 902 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l---~hpniv~l~~~~~---- 902 (1133)
..++|++.+.||+|+||.||+|.+ .+|+.||+|++..... ....+.+|+++++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 456899999999999999999987 3689999999864322 234677888888777 8999999999986
Q ss_pred CCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEecc
Q 001171 903 GPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 903 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
......++||||++ |+|.+++..... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Df 164 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADF 164 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCT---TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecC
Confidence 23345689999997 699999987432 33889999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccc
Q 001171 983 GLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQI 1062 (1133)
Q Consensus 983 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~ 1062 (1133)
|+++.... ........|++.|+|||++.+..++.++||||+||++|||++|+.||......+....+.+.......
T Consensus 165 g~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~ 240 (326)
T 1blx_A 165 GLARIYSF----QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE 240 (326)
T ss_dssp CSCCCCCG----GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCG
T ss_pred cccccccC----CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCc
Confidence 99865422 12234457899999999999989999999999999999999999999877766666555544322111
Q ss_pred ccccc--------------CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH--HhcCcC
Q 001171 1063 SELLE--------------PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM--LEGCRV 1116 (1133)
Q Consensus 1063 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~--Le~~~~ 1116 (1133)
..... ......... ... ...+++.+||+.||++||++.|++++ +..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~ 305 (326)
T 1blx_A 241 EDWPRDVALPRQAFHSKSAQPIEKFVTD---IDE--LGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER 305 (326)
T ss_dssp GGSCTTCSSCGGGSCCCCCCCGGGTCCS---CCH--HHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred ccCccccccchhhhcccCcchhhhcccc---CCH--HHHHHHHHHcCCCcccCCCHHHHhcCccccccch
Confidence 11000 000000000 011 12378999999999999999999964 444443
No 238
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=3.7e-36 Score=346.72 Aligned_cols=203 Identities=23% Similarity=0.426 Sum_probs=174.8
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.++|++.+.||+|+||.||+|.+. +++.||+|++..... ..+.+.+|++++++++||||+++++++... ...++||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~ 110 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-GEISICM 110 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEET-TEEEEEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEEC-CEEEEEE
Confidence 357999999999999999999876 689999999875432 246788999999999999999999999876 4459999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC-CceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL-DMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
||+++++|.+++...+ .+++..+..++.+++.|++|||+. ||+||||||+||+++.++.+||+|||+++.....
T Consensus 111 e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 185 (360)
T 3eqc_A 111 EHMDGGSLDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 185 (360)
T ss_dssp CCCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred ECCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc
Confidence 9999999999998753 388999999999999999999996 9999999999999999999999999998654221
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhH
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDI 1049 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~ 1049 (1133)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+.
T Consensus 186 -----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~ 238 (360)
T 3eqc_A 186 -----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEL 238 (360)
T ss_dssp -----C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHH
T ss_pred -----cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 22345789999999999999999999999999999999999999976655443
No 239
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=344.71 Aligned_cols=263 Identities=20% Similarity=0.322 Sum_probs=202.2
Q ss_pred hcCCCcccccccccceeEEEEEE-----CCceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCC-CcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-----QDGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPP-DVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-~~~ 908 (1133)
.++|++.+.||+|+||.||+|++ .+|+.||||++..... ..+.+.+|++++++++||||+++++++.... ...
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 45789999999999999999984 3689999999975432 2467899999999999999999999986543 345
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++++|.+++.... ..+++..++.++.||++||+|||+.||+||||||+||+++.++.+||+|||+++..
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~ 195 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHK----ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 195 (326)
T ss_dssp EEEECCCTTCBHHHHHHHST----TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEECCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhc
Confidence 89999999999999998743 34889999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChh------------hHHHHHHHH
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE------------DIVKWVKKQ 1056 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~------------~~~~~~~~~ 1056 (1133)
..............++..|+|||++.+..++.++||||+||++|||++|..||...... .....+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (326)
T 2w1i_A 196 PQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 275 (326)
T ss_dssp CSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred cccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHH
Confidence 43322112233456778899999998888899999999999999999999998532110 111111111
Q ss_pred hhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1057 LQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
....... ..+.. .. ....+++.+||+.||++||++.|+++.|+.+.
T Consensus 276 ~~~~~~~--------~~~~~---~~--~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~ 321 (326)
T 2w1i_A 276 LKNNGRL--------PRPDG---CP--DEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321 (326)
T ss_dssp HHTTCCC--------CCCTT---CC--HHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred hhcCCCC--------CCCCc---cc--HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 1111100 00000 00 11237889999999999999999999998764
No 240
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=7.2e-36 Score=341.88 Aligned_cols=270 Identities=19% Similarity=0.284 Sum_probs=206.0
Q ss_pred HHHHhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhh--ccCCCeeeEEEEEeCCC---C
Q 001171 832 TLEATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGK--VKHRNLTVLRGYYAGPP---D 906 (1133)
Q Consensus 832 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~--l~hpniv~l~~~~~~~~---~ 906 (1133)
.....++|++.+.||+|+||.||+|+++ |+.||||++... ..+.+.+|+++++. ++||||+++++++.... .
T Consensus 37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~--~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~ 113 (342)
T 1b6c_B 37 QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 113 (342)
T ss_dssp HHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG--GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCC
T ss_pred cccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch--hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccc
Confidence 3445678999999999999999999885 899999998643 35678889999888 78999999999998764 2
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHh--------cCCceecccCccceeeCCCCceE
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLH--------SLDMVHGDIKPQNVLFDADFEAH 978 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH--------~~~ivH~Dlkp~NIll~~~~~~k 978 (1133)
..++||||+++|+|.+++... .+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 114 ~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~k 187 (342)
T 1b6c_B 114 QLWLVSDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCC 187 (342)
T ss_dssp CEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEE
T ss_pred eeEEEEeecCCCcHHHHHhcc------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEE
Confidence 568999999999999999763 3789999999999999999999 89999999999999999999999
Q ss_pred EeccCcccccccCCCCC-CCCCCCCCCCCccCccccCCCC------CCCCCchhHHHHHHHHHHhC----------CCCC
Q 001171 979 LSEFGLDRLAIATPAEA-SSSTTPIGSLGYVSPEAASTGQ------PTKEADVYSFGIVLLEILTG----------RKPV 1041 (1133)
Q Consensus 979 l~Dfg~a~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~------~~~~~DvwSlG~il~el~tg----------~~Pf 1041 (1133)
|+|||+++......... .......||+.|+|||++.+.. ++.++|||||||++|||++| +.||
T Consensus 188 L~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~ 267 (342)
T 1b6c_B 188 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 267 (342)
T ss_dssp ECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCc
Confidence 99999997654332211 1234557999999999997653 23689999999999999999 7788
Q ss_pred ccCChh-hHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCC
Q 001171 1042 MFTQDE-DIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVG 1117 (1133)
Q Consensus 1042 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~ 1117 (1133)
...... .....+.+..........+...+ ..........+++.+||+.||++||++.||+++|+.+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 268 YDLVPSDPSVEEMRKVVCEQKLRPNIPNRW-------QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp TTTSCSSCCHHHHHHHHTTSCCCCCCCGGG-------GTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred cccCcCcccHHHHHHHHHHHHhCCCCcccc-------cchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 643221 11122222222111111111111 0111122233899999999999999999999999987654
No 241
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=5.8e-36 Score=336.35 Aligned_cols=249 Identities=22% Similarity=0.328 Sum_probs=203.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
.+.|++.+.||+|+||.||+|... +++.||+|++.... ...+.+.+|++++++++||||+++++++... ...++||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~ 99 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD-TKLWIIM 99 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEEEEE
Confidence 457999999999999999999764 68999999986443 2357899999999999999999999999875 4559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++++|.+++.. ..+++..+..++.|++.||+|||+.||+||||||+||+++.++.+||+|||++.......
T Consensus 100 e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 173 (303)
T 3a7i_A 100 EYLGGGSALDLLEP------GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ 173 (303)
T ss_dssp ECCTTEEHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB
T ss_pred EeCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCccc
Confidence 99999999999864 248899999999999999999999999999999999999999999999999986543221
Q ss_pred CCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCC
Q 001171 993 AEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLE 1072 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1133)
.......|++.|+|||++.+..++.++|||||||++|||++|+.||...........+.+. .... +....
T Consensus 174 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~----~~~~-~~~~~-- 243 (303)
T 3a7i_A 174 ---IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN----NPPT-LEGNY-- 243 (303)
T ss_dssp ---CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS----CCCC-CCSSC--
T ss_pred ---cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcC----CCCC-Ccccc--
Confidence 2234457899999999999989999999999999999999999999766555444333221 1111 11110
Q ss_pred CCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1073 LDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1073 ~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
.. ...+++.+||+.||++||++.|++++.
T Consensus 244 ----~~------~l~~li~~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 244 ----SK------PLKEFVEACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp ----CH------HHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred ----CH------HHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence 11 123788899999999999999998753
No 242
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=344.31 Aligned_cols=261 Identities=18% Similarity=0.231 Sum_probs=185.7
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-CHHHHHHHHHHHhhcc-CCCeeeEEEEEe-------CCC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-DENTFRKEAEALGKVK-HRNLTVLRGYYA-------GPP 905 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~-hpniv~l~~~~~-------~~~ 905 (1133)
..+|++.++||+|+||.||+|++. +|+.||||++..... ..+.+.+|+++++++. ||||+++++++. ...
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 457999999999999999999875 689999999854432 3467889999999996 999999999984 233
Q ss_pred CcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC--ceecccCccceeeCCCCceEEeccC
Q 001171 906 DVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD--MVHGDIKPQNVLFDADFEAHLSEFG 983 (1133)
Q Consensus 906 ~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~--ivH~Dlkp~NIll~~~~~~kl~Dfg 983 (1133)
...++||||+. |+|.+++..... ...+++..++.++.||+.||+|||+.+ |+||||||+||+++.++.+||+|||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg 183 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMES--RGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFG 183 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCT
T ss_pred ceEEEEEEecC-CCHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCc
Confidence 44689999995 799999876432 234899999999999999999999999 9999999999999999999999999
Q ss_pred cccccccCCCCC---------CCCCCCCCCCCccCcccc---CCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHH
Q 001171 984 LDRLAIATPAEA---------SSSTTPIGSLGYVSPEAA---STGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVK 1051 (1133)
Q Consensus 984 ~a~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~---~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~ 1051 (1133)
+++......... .......||+.|+|||++ .+..++.++|||||||++|||++|+.||.........
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~- 262 (337)
T 3ll6_A 184 SATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIV- 262 (337)
T ss_dssp TCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----------
T ss_pred cceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhh-
Confidence 997653322111 111245689999999998 5667889999999999999999999999643322211
Q ss_pred HHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCC
Q 001171 1052 WVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPD 1119 (1133)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~ 1119 (1133)
... ....... .... ...+++.+||+.||++||++.|++++|+.+.....
T Consensus 263 --~~~-----~~~~~~~------~~~~------~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 263 --NGK-----YSIPPHD------TQYT------VFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp ----------CCCCTTC------CSSG------GGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred --cCc-----ccCCccc------ccch------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 110 0000000 0001 12378889999999999999999999998776443
No 243
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.1e-36 Score=340.03 Aligned_cols=267 Identities=19% Similarity=0.300 Sum_probs=185.2
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
..++|++.+.||+|+||.||+|.+. +++.||||++.... ...+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~lv 91 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD-ELWLV 91 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSS-CEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC-CcEEE
Confidence 4568999999999999999999764 68999999986432 23467889999999999999999999998765 45999
Q ss_pred EeccCCCCHHHHHHhhcc---CCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 912 YDYMPNGNLATLLQEASH---QDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~---~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
|||+++++|.+++..... .....+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++..
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 171 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFL 171 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHHC
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchhee
Confidence 999999999999975321 12345899999999999999999999999999999999999999999999999998754
Q ss_pred ccCCC--CCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 989 IATPA--EASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 989 ~~~~~--~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
..... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||........................
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 251 (303)
T 2vwi_A 172 ATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGV 251 (303)
T ss_dssp C---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC--
T ss_pred ccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCcccccc
Confidence 33211 1112234579999999999865 56899999999999999999999999766555433322211100000000
Q ss_pred ccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 LEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.++.... .... ...+++.+||+.||.+||++.|++++
T Consensus 252 ~~~~~~~--~~~~------~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 252 QDKEMLK--KYGK------SFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp ---CCCC--CCCH------HHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ccchhhh--hhhH------HHHHHHHHHccCChhhCcCHHHHhhC
Confidence 1111100 0111 12378889999999999999999864
No 244
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.3e-36 Score=334.68 Aligned_cols=254 Identities=22% Similarity=0.273 Sum_probs=198.7
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC--cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
..++|++.+.||+|+||.||+|.++ +++.||+|++.... ...+.+.+|++++++++||||+++++++... ...++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv 83 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-NIQYLF 83 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcC-CEEEEE
Confidence 3467999999999999999999876 68999999986432 2246789999999999999999999999875 455899
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccC
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
|||+++++|.+++... ..+++..+..++.||++||+|||+.||+||||||+||+++.++.+||+|||.+......
T Consensus 84 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 158 (276)
T 2yex_A 84 LEYCSGGELFDRIEPD-----IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (276)
T ss_dssp EECCTTEEGGGGSBTT-----TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EEecCCCcHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence 9999999999888642 34889999999999999999999999999999999999999999999999998754322
Q ss_pred CCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 992 PAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 992 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
.. ........|++.|+|||++.+..+ +.++||||+||++|||++|+.||.............. .... ... ..
T Consensus 159 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~--~~~~---~~~-~~ 231 (276)
T 2yex_A 159 NR-ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK--EKKT---YLN-PW 231 (276)
T ss_dssp TE-ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHH--TTCT---TST-TG
T ss_pred cc-hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhh--hccc---ccC-ch
Confidence 21 122344578999999999987665 7789999999999999999999976544321111111 1100 000 00
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
. .... ...+++.+|++.||++||++.|++++
T Consensus 232 ~-------~~~~--~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 232 K-------KIDS--APLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp G-------GSCH--HHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred h-------hcCH--HHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 0 0001 12378999999999999999999864
No 245
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=6.9e-36 Score=354.05 Aligned_cols=261 Identities=18% Similarity=0.214 Sum_probs=201.5
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEec
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDY 914 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~ 914 (1133)
.++|++.++||+|+||.||+|.+ .+++.||||++..... ...+.+|+++++.++|++.+..+.++.......++||||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~ 84 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL 84 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence 35899999999999999999987 4689999998765432 346889999999998755554444444444666999999
Q ss_pred cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee---CCCCceEEeccCcccccccC
Q 001171 915 MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---DADFEAHLSEFGLDRLAIAT 991 (1133)
Q Consensus 915 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~ 991 (1133)
+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||+ +.++.+||+|||+++.....
T Consensus 85 ~-g~sL~~ll~~~~----~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 85 L-GPSLEDLFNFCS----RKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp C-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred C-CCCHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 9 999999998643 348999999999999999999999999999999999999 68899999999999765433
Q ss_pred CCCC----CCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhh---hccccc
Q 001171 992 PAEA----SSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQ---RGQISE 1064 (1133)
Q Consensus 992 ~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~---~~~~~~ 1064 (1133)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...........+.+... ...+..
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~ 239 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEA 239 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHH
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHH
Confidence 2211 122356799999999999999999999999999999999999999976544332222222111 111111
Q ss_pred cccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1065 LLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
.. ..+ . ....+++.+||+.||++||++.+|++.|+.+.
T Consensus 240 l~-~~~------p------~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~ 277 (483)
T 3sv0_A 240 LC-RGY------P------TEFASYFHYCRSLRFDDKPDYSYLKRLFRDLF 277 (483)
T ss_dssp HH-TTS------C------HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHH
T ss_pred Hh-cCC------c------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 11 111 0 11237888999999999999999999998763
No 246
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=335.31 Aligned_cols=252 Identities=21% Similarity=0.344 Sum_probs=197.0
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEe
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e 913 (1133)
..++|++.+.||+|+||.||+|.+. +|+.||+|++.... ..+.+.+|++++++++||||+++++++... ...++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQCDSPHVVKYYGSYFKN-TDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhCCCCCCccEEEEEEeC-CEEEEEee
Confidence 4568999999999999999999876 58999999997543 456789999999999999999999999875 44599999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCCC
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPA 993 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 993 (1133)
|+++++|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++.....
T Consensus 105 ~~~~~~L~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~-- 178 (314)
T 3com_A 105 YCGAGSVSDIIRLRN----KTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT-- 178 (314)
T ss_dssp CCTTEEHHHHHHHHT----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT--
T ss_pred cCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh--
Confidence 999999999997432 34899999999999999999999999999999999999999999999999998654322
Q ss_pred CCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCC
Q 001171 994 EASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEL 1073 (1133)
Q Consensus 994 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1133)
........|++.|+|||++.+..++.++||||+||++|+|++|+.||...........+... .......+
T Consensus 179 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~----~~~~~~~~----- 248 (314)
T 3com_A 179 -MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTN----PPPTFRKP----- 248 (314)
T ss_dssp -BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS----CCCCCSSG-----
T ss_pred -ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcC----CCcccCCc-----
Confidence 12233457899999999999889999999999999999999999999765544333222111 10000000
Q ss_pred CCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1074 DPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1074 ~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+.. ...+++.+||+.||.+||++.|++++
T Consensus 249 ----~~~~~--~l~~li~~~l~~dp~~Rpt~~~ll~~ 279 (314)
T 3com_A 249 ----ELWSD--NFTDFVKQCLVKSPEQRATATQLLQH 279 (314)
T ss_dssp ----GGSCH--HHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred ----ccCCH--HHHHHHHHHccCChhhCcCHHHHHhC
Confidence 00011 12378899999999999999999863
No 247
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1e-35 Score=333.56 Aligned_cols=250 Identities=21% Similarity=0.331 Sum_probs=200.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc----------CHHHHHHHHHHHhhcc-CCCeeeEEEEEeC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI----------DENTFRKEAEALGKVK-HRNLTVLRGYYAG 903 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----------~~~~~~~E~~~l~~l~-hpniv~l~~~~~~ 903 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||||++..... ..+.+.+|+++++++. ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468999999999999999999875 689999999864321 1356788999999995 9999999999987
Q ss_pred CCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccC
Q 001171 904 PPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFG 983 (1133)
Q Consensus 904 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg 983 (1133)
. ...++||||+++++|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||
T Consensus 96 ~-~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 96 N-TFFFLVFDLMKKGELFDYLTEKV-----TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp S-SEEEEEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred C-CeEEEEEeccCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEeccc
Confidence 5 45699999999999999998643 38899999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCccCccccC------CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHh
Q 001171 984 LDRLAIATPAEASSSTTPIGSLGYVSPEAAS------TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQL 1057 (1133)
Q Consensus 984 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~ 1057 (1133)
+++..... .......|++.|+|||++. ...++.++||||+|+++|||++|+.||...........+....
T Consensus 170 ~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~ 245 (298)
T 1phk_A 170 FSCQLDPG----EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGN 245 (298)
T ss_dssp TCEECCTT----CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC
T ss_pred chhhcCCC----cccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCC
Confidence 98754321 2233457899999999984 4567899999999999999999999997766555444433321
Q ss_pred hhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1058 QRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
.. ...+.. ..... ...+++.+||+.||++||++.|+++
T Consensus 246 ~~-----~~~~~~-------~~~~~--~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 246 YQ-----FGSPEW-------DDYSD--TVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CC-----CCTTTG-------GGSCH--HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cc-----cCcccc-------cccCH--HHHHHHHHHccCCcccCCCHHHHHh
Confidence 10 000100 00111 1237899999999999999999986
No 248
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=8.7e-38 Score=362.31 Aligned_cols=244 Identities=16% Similarity=0.140 Sum_probs=186.3
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccC----CcCHHHHHHHHH---HHhhccCCCeeeEE-------EE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDG----TIDENTFRKEAE---ALGKVKHRNLTVLR-------GY 900 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~----~~~~~~~~~E~~---~l~~l~hpniv~l~-------~~ 900 (1133)
.++|++.+.||+|+||.||+|.+ .+|+.||||++... ....+.+.+|++ ++++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 45789999999999999999986 46999999998632 223467889994 55556899999988 66
Q ss_pred EeCCCC----------------cEEEEEeccCCCCHHHHHHhhccCCC--CCCChHHHHHHHHHHHHHHHHHhcCCceec
Q 001171 901 YAGPPD----------------VRLLVYDYMPNGNLATLLQEASHQDG--HVLNWPMRHLISLGLARGLSFLHSLDMVHG 962 (1133)
Q Consensus 901 ~~~~~~----------------~~~lV~e~~~~gsL~~~l~~~~~~~~--~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~ 962 (1133)
+..... ..++||||+ +|+|.+++...+.... ..+++..+..++.||+.||+|||++||+||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHr 230 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT 230 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence 654422 258999999 6899999987543221 224457888899999999999999999999
Q ss_pred ccCccceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCC-----------CCCCCCchhHHHHHH
Q 001171 963 DIKPQNVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTG-----------QPTKEADVYSFGIVL 1031 (1133)
Q Consensus 963 Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DvwSlG~il 1031 (1133)
||||+|||++.++.+||+|||+++... .......| +.|+|||++.+. .++.++|||||||++
T Consensus 231 Dikp~NIll~~~~~~kL~DFG~a~~~~------~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il 303 (377)
T 3byv_A 231 YLRPVDIVLDQRGGVFLTGFEHLVRDG------ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVI 303 (377)
T ss_dssp CCCGGGEEECTTCCEEECCGGGCEETT------CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHH
T ss_pred CCCHHHEEEcCCCCEEEEechhheecC------CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHH
Confidence 999999999999999999999987421 12234567 999999999877 799999999999999
Q ss_pred HHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1032 LEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1032 ~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
|||++|+.||.......... .+...... ... ...+++.+||+.||++||++.|+++
T Consensus 304 ~elltg~~Pf~~~~~~~~~~-------------~~~~~~~~---~~~------~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 304 YWIWCADLPITKDAALGGSE-------------WIFRSCKN---IPQ------PVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp HHHHHSSCCC------CCSG-------------GGGSSCCC---CCH------HHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred HHHHHCCCCCcccccccchh-------------hhhhhccC---CCH------HHHHHHHHHcCCCchhCCCHHHHhh
Confidence 99999999996433221110 01111111 111 1237889999999999999999986
No 249
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=9.7e-36 Score=342.61 Aligned_cols=259 Identities=22% Similarity=0.329 Sum_probs=186.4
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCC-----CC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGP-----PD 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~-----~~ 906 (1133)
.++|++.+.||+|+||.||+|.+. +|+.||||++...... .+.+.+|++++++++||||+++++++... ..
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 468999999999999999999764 6899999999654322 45778999999999999999999998653 13
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
..++||||+ +++|.+++.. ..+++..+..++.||++||+|||+.||+||||||+||+++.++.+||+|||+++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC------QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CCEEEEECC-CEECC-----------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred eEEEEeccc-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 358999999 7899888864 238899999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...+..+....+.+....... +.
T Consensus 181 ~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~-~~ 253 (367)
T 2fst_X 181 HTAD------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGA-EL 253 (367)
T ss_dssp ----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCH-HH
T ss_pred cccc------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCH-HH
Confidence 5421 2334578999999999876 67899999999999999999999999877766665555544322110 00
Q ss_pred ccC-----------CcCCCCCCChhHHHH-----HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 LEP-----------GLLELDPESSEWEEF-----LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~-----------~~~~~~~~~~~~~~~-----~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... .+..... ..+... ....+++.+|++.||++|||+.|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 254 LKKISSESARNYIQSLTQMPK--MNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp HTTCCCHHHHHHHHTSCCCCC--CCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHhhhHHHHHHHhccCCCCC--CCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 000 0000000 011111 123489999999999999999999976
No 250
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.5e-36 Score=341.76 Aligned_cols=256 Identities=18% Similarity=0.254 Sum_probs=200.4
Q ss_pred HHHhcCCCcc-cccccccceeEEEEEEC-CceEEEEEEcccCC---cCHHHHHHHHHHHhhcc-CCCeeeEEEEEeCCCC
Q 001171 833 LEATRQFDEE-NVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT---IDENTFRKEAEALGKVK-HRNLTVLRGYYAGPPD 906 (1133)
Q Consensus 833 ~~~~~~~~~~-~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~---~~~~~~~~E~~~l~~l~-hpniv~l~~~~~~~~~ 906 (1133)
....++|.+. +.||+|+||.||+|... +|+.||+|++.... .....+.+|++++++++ ||||+++++++... .
T Consensus 24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~-~ 102 (327)
T 3lm5_A 24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT-S 102 (327)
T ss_dssp HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-S
T ss_pred HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC-C
Confidence 3445577777 89999999999999876 58999999986432 23578899999999994 69999999999876 4
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC---CCceEEeccC
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA---DFEAHLSEFG 983 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg 983 (1133)
..++||||+++|+|.+++.... ...+++..+..++.||+.||+|||++||+||||||+||+++. ++.+||+|||
T Consensus 103 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg 179 (327)
T 3lm5_A 103 EIILILEYAAGGEIFSLCLPEL---AEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFG 179 (327)
T ss_dssp EEEEEEECCTTEEGGGGGSSCC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred eEEEEEEecCCCcHHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCc
Confidence 4599999999999998885432 245899999999999999999999999999999999999988 7899999999
Q ss_pred cccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccc
Q 001171 984 LDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQIS 1063 (1133)
Q Consensus 984 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~ 1063 (1133)
+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+....+..... ...
T Consensus 180 ~a~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~--~~~ 253 (327)
T 3lm5_A 180 MSRKIGHA----CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNV--DYS 253 (327)
T ss_dssp GCEEC-------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC--CCC
T ss_pred cccccCCc----cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhccc--ccC
Confidence 99754321 122345799999999999999999999999999999999999999987666555444433211 110
Q ss_pred ccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1064 ELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..... ... . ...+++.+||+.||++||+++|++++
T Consensus 254 ---~~~~~---~~~----~--~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 254 ---EETFS---SVS----Q--LATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp ---TTTTT---TSC----H--HHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred ---chhhc---ccC----H--HHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 00000 001 1 12378899999999999999999976
No 251
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=6e-36 Score=333.99 Aligned_cols=252 Identities=19% Similarity=0.310 Sum_probs=182.4
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.+.||+|+||.||+|++. +|+.||+|++...... .+.+.+|...++.++||||+++++++.... ..++|
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~-~~~lv 84 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG-DVWIC 84 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-SEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC-CEEEE
Confidence 468999999999999999999874 6899999999754322 223445555688889999999999998764 45999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC-CceecccCccceeeCCCCceEEeccCccccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL-DMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
|||++ |+|.+++...... ...+++..+..++.|++.|++|||++ ||+||||||+||+++.++.+||+|||+++....
T Consensus 85 ~e~~~-~~l~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 85 MELMD-TSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp EECCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred Eehhc-cchHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 99996 5888888654322 24589999999999999999999998 999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCCCCccCcccc----CCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAA----STGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
. .......||+.|+|||++ .+..++.++||||+||++|||++|+.||....... ..+........ ....
T Consensus 163 ~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~-~~~~ 235 (290)
T 3fme_A 163 D----VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF--QQLKQVVEEPS-PQLP 235 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH--HHHHHHHHSCC-CCCC
T ss_pred c----ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchH--HHHHHHhccCC-CCcc
Confidence 2 122334689999999996 55678899999999999999999999997533221 11122211111 1111
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
.... .. ...+++.+|++.||++||++.|+++
T Consensus 236 ~~~~------~~------~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 236 ADKF------SA------EFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp TTTS------CH------HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cccC------CH------HHHHHHHHHhhcChhhCcCHHHHHh
Confidence 1000 11 1237889999999999999999986
No 252
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1.6e-35 Score=338.50 Aligned_cols=264 Identities=16% Similarity=0.246 Sum_probs=203.3
Q ss_pred hcCCCcccccccccceeEEEEEE-C-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCC------eeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-Q-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRN------LTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~l~~~~~~~~~~ 907 (1133)
.++|++.+.||+|+||.||+|.+ + +++.||||++.......+.+.+|+++++.++|++ ++++++++.... .
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~-~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG-H 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT-E
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC-c
Confidence 35899999999999999999976 3 6899999999765545577899999999997664 999999998764 5
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC--------------
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA-------------- 973 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~-------------- 973 (1133)
.++||||+ +++|.+++...+. ..+++..+..++.||++||+|||++||+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGF---LPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCC---CCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 59999999 8999999987542 34789999999999999999999999999999999999987
Q ss_pred -----CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhh
Q 001171 974 -----DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDED 1048 (1133)
Q Consensus 974 -----~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~ 1048 (1133)
++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 241 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDE------HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE 241 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTS------CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH
T ss_pred cccccCCCceEeeCcccccCcc------ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH
Confidence 66899999999865321 2234578999999999999999999999999999999999999998776666
Q ss_pred HHHHHHHHhhhccc--------cccccCCcCCCCCCC------------------hhHHHHHHhHhhhhccCCCCCCCCC
Q 001171 1049 IVKWVKKQLQRGQI--------SELLEPGLLELDPES------------------SEWEEFLLGVKVGLLCTAPDPLDRP 1102 (1133)
Q Consensus 1049 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------------------~~~~~~~~~~~li~~Cl~~dP~~RP 1102 (1133)
....+.+....... ............... ..........+++.+||+.||++||
T Consensus 242 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 321 (339)
T 1z57_A 242 HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI 321 (339)
T ss_dssp HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc
Confidence 55554443221100 000000000000000 0001112234899999999999999
Q ss_pred CHHHHHHH
Q 001171 1103 SMADIVFM 1110 (1133)
Q Consensus 1103 s~~evl~~ 1110 (1133)
++.|++++
T Consensus 322 t~~ell~h 329 (339)
T 1z57_A 322 TLREALKH 329 (339)
T ss_dssp CHHHHTTS
T ss_pred CHHHHhcC
Confidence 99999865
No 253
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-35 Score=343.19 Aligned_cols=336 Identities=19% Similarity=0.205 Sum_probs=212.4
Q ss_pred CCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCcccccee
Q 001171 361 SLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETL 440 (1133)
Q Consensus 361 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 440 (1133)
.++++++|++++|.++...+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 36788999999999887777778888999999999999887777788888888888888888888777778888888888
Q ss_pred ecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCC
Q 001171 441 NLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLS 520 (1133)
Q Consensus 441 ~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 520 (1133)
++++|+++...+..|.++++|++|++++|.+++..+..++.+++|++|++++|++++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 8888888855555567788888888888888776677777777777777777777653 2455666777777777665
Q ss_pred CCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCcccc
Q 001171 521 GELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELG 600 (1133)
Q Consensus 521 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 600 (1133)
+ +...++|++|++++|.+....... .++|+.|++++|++++. .. +.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~------------------------l~ 245 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AW------------------------LL 245 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GG------------------------GG
T ss_pred c-----cCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HH------------------------Hc
Confidence 2 223345566666666555332211 23455555555555432 23 44
Q ss_pred CCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCccccccc
Q 001171 601 ACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTL 680 (1133)
Q Consensus 601 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 680 (1133)
.+++|++|++++|.+++..|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 4444555555555544444444444555555555555554 23444444555555555555555 344445555555555
Q ss_pred ccccccccccCCccccccccCcccccccccccccCCccccCCCCCCcccCcCccccCCC
Q 001171 681 NLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIPKMLSSRFNDPSIFAMNRELCGKP 739 (1133)
Q Consensus 681 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~ 739 (1133)
+|++|++++. | +..+++|+.|++++|++++.....+...+.... +.+++..|..+
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~ 378 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA-VDDADQHCKID 378 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT-BCCCCSCCCTT
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhc-ccccCceeccc
Confidence 5555555532 2 445566666666666666654444333333333 45556666644
No 254
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=8.7e-36 Score=334.82 Aligned_cols=253 Identities=22% Similarity=0.365 Sum_probs=197.4
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC-cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT-IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~ 912 (1133)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++.... ..++||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~lv~ 95 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDG-KLWIMI 95 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC--CEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCC-eEEEEE
Confidence 4568999999999999999999886 58999999986433 34578899999999999999999999998764 559999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccccCC
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATP 992 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 992 (1133)
||+++++|.+++.... ..+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||++......
T Consensus 96 e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 170 (302)
T 2j7t_A 96 EFCPGGAVDAIMLELD----RGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT- 170 (302)
T ss_dssp ECCTTEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-
T ss_pred EeCCCCcHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc-
Confidence 9999999999987643 23899999999999999999999999999999999999999999999999987532211
Q ss_pred CCCCCCCCCCCCCCccCcccc-----CCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 993 AEASSSTTPIGSLGYVSPEAA-----STGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 993 ~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
........|++.|+|||++ .+..++.++||||+||++|||++|+.||...+.......+.+. .......
T Consensus 171 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~----~~~~~~~ 244 (302)
T 2j7t_A 171 --LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKS----DPPTLLT 244 (302)
T ss_dssp --HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS----CCCCCSS
T ss_pred --ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhcc----CCcccCC
Confidence 1112345689999999998 4667899999999999999999999999766654443332221 1111111
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+ ..+.. ...+++.+||+.||++||++.|++++
T Consensus 245 ~---------~~~~~--~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 245 P---------SKWSV--EFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp G---------GGSCH--HHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred c---------cccCH--HHHHHHHHHcccChhhCCCHHHHhcC
Confidence 0 00011 12378899999999999999999864
No 255
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.7e-35 Score=357.89 Aligned_cols=349 Identities=17% Similarity=0.143 Sum_probs=194.1
Q ss_pred CCccCCCCCCCCCCCc----cceeeeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcc
Q 001171 47 GALDGWDSSTPSAPCD----WRGIVCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLR 122 (1133)
Q Consensus 47 ~~l~~w~~~~~~~~c~----w~gv~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 122 (1133)
..+++|..+. +||. |.+|.|+. + ++....+... ...-..+.+++.|++++|.+.+..+..++.+++|+
T Consensus 7 ~~l~~~~~~~--~C~~~~~~~~c~~~~~-~---i~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~ 78 (597)
T 3oja_B 7 YNVKPRQPEY--KCIDSNLQYDCVFYDV-H---IDMQTQDVYF--GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78 (597)
T ss_dssp ----CCCSEE--CCCCC--CCSEEECSC-E---ECSSCCCCEE--SCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCS
T ss_pred ccccCCCCCC--cCcccCcCceeEecCc-e---eccccccccc--CcccccCCCceEEEeeCCCCCCcCHHHHccCCCCc
Confidence 3468896543 4553 77776652 1 1111111111 11122356777777777777644444466777777
Q ss_pred eEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCC
Q 001171 123 AVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFS 202 (1133)
Q Consensus 123 ~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~ 202 (1133)
.|+|++|.+++..|..++++++| ++|+|++|.+++..|..|+++++|++|+|++|+++
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L----------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTI----------------------QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTC----------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCCChHHhcCCCCC----------------------CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 77777777776555556655544 44455555555555555666666666666666666
Q ss_pred CCCcccccCccccceEecccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccc
Q 001171 203 GEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVL 282 (1133)
Q Consensus 203 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 282 (1133)
+..+..|+.+++|++|+|++|.+++..|..+.++++|++|++++|.+++.. ++.+++|+.|++++|.+++.
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l------ 207 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL------ 207 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE------
T ss_pred CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc------
Confidence 433334456666666666666665555555556666666666666555432 34455555666666655432
Q ss_pred cCcccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCC
Q 001171 283 CNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSL 362 (1133)
Q Consensus 283 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 362 (1133)
....+|+.|++++| .++.+.+.. .++|++|+|++|.+++ +..++.+
T Consensus 208 ----~~~~~L~~L~ls~n-------------------------~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 208 ----AIPIAVEELDASHN-------------------------SINVVRGPV---NVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp ----ECCTTCSEEECCSS-------------------------CCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred ----cCCchhheeeccCC-------------------------ccccccccc---CCCCCEEECCCCCCCC--ChhhccC
Confidence 11233444444444 444432222 1345555555555553 2445555
Q ss_pred CCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeec
Q 001171 363 DKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNL 442 (1133)
Q Consensus 363 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 442 (1133)
++|++|+|++|.+++..|..|..+++|++|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 556666666666555555556666666666666666654 3444555666666666666666 34555666677777777
Q ss_pred ccccccccCChhhcCCCCCcEEecccCcCCC
Q 001171 443 SENDIRGNIPEEITRLSNLTTLNLSYNKFGG 473 (1133)
Q Consensus 443 ~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 473 (1133)
++|.|++.. +..+++|+.|+|++|.+.+
T Consensus 332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 332 DHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 777776432 5556677777777777654
No 256
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.7e-35 Score=346.23 Aligned_cols=265 Identities=18% Similarity=0.209 Sum_probs=198.2
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhcc--------CCCeeeEEEEEeC---
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVK--------HRNLTVLRGYYAG--- 903 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~--------hpniv~l~~~~~~--- 903 (1133)
.++|++.++||+|+||+||+|++. +++.||||++.......+.+.+|++++++++ ||||+++++++..
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 115 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV 115 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence 368999999999999999999764 6899999999765545678889999999996 7889999998862
Q ss_pred CCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC-CceecccCccceeeCCCC-------
Q 001171 904 PPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL-DMVHGDIKPQNVLFDADF------- 975 (1133)
Q Consensus 904 ~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-~ivH~Dlkp~NIll~~~~------- 975 (1133)
.....++||||+ ++++.+++..... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.++
T Consensus 116 ~~~~~~lv~e~~-~~~l~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~ 191 (397)
T 1wak_A 116 NGTHICMVFEVL-GHHLLKWIIKSNY---QGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLA 191 (397)
T ss_dssp TEEEEEEEECCC-CCBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHH
T ss_pred CCceEEEEEecc-CccHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhh
Confidence 234568999999 6677777765432 3489999999999999999999998 999999999999999775
Q ss_pred ------------------------------------------ceEEeccCcccccccCCCCCCCCCCCCCCCCccCcccc
Q 001171 976 ------------------------------------------EAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAA 1013 (1133)
Q Consensus 976 ------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 1013 (1133)
.+||+|||.++.... ......||+.|+|||++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~------~~~~~~gt~~y~aPE~~ 265 (397)
T 1wak_A 192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK------HFTEDIQTRQYRSLEVL 265 (397)
T ss_dssp HHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB------CSCSCCSCGGGCCHHHH
T ss_pred hhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc------cCccCCCCCcccCChhh
Confidence 799999999975422 23345789999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhCCCCCccCCh------hhHHHHHHHHhhhc--------ccc-ccccC--Cc---CCC
Q 001171 1014 STGQPTKEADVYSFGIVLLEILTGRKPVMFTQD------EDIVKWVKKQLQRG--------QIS-ELLEP--GL---LEL 1073 (1133)
Q Consensus 1014 ~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~------~~~~~~~~~~~~~~--------~~~-~~~~~--~~---~~~ 1073 (1133)
.+..++.++|||||||++|||++|+.||..... .+....+.+..... ... +.+.. .. ...
T Consensus 266 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (397)
T 1wak_A 266 IGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKL 345 (397)
T ss_dssp HTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccccccc
Confidence 998999999999999999999999999975442 22222222221110 000 00000 00 000
Q ss_pred CCCC----------hhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1074 DPES----------SEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1074 ~~~~----------~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+.. ..........+++.+||+.||++|||++|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 346 KPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp CCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred CCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 0000 001111223489999999999999999999864
No 257
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=3.2e-35 Score=341.34 Aligned_cols=210 Identities=20% Similarity=0.288 Sum_probs=176.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhcc-CC-----CeeeEEEEEeCCCCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVK-HR-----NLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-hp-----niv~l~~~~~~~~~~~ 908 (1133)
.++|++.++||+|+||+||+|.+. +++.||||++.........+.+|+++++.++ |+ +++++++++... ...
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~-~~~ 131 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR-NHL 131 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET-TEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC-Cce
Confidence 568999999999999999999875 6899999999765444567788999999885 55 499999998876 455
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHh--cCCceecccCccceeeC--CCCceEEeccCc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLH--SLDMVHGDIKPQNVLFD--ADFEAHLSEFGL 984 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH--~~~ivH~Dlkp~NIll~--~~~~~kl~Dfg~ 984 (1133)
++||||++ |+|.+++..... ..+++..+..++.||+.||+||| +.||+||||||+||+++ .++.+||+|||+
T Consensus 132 ~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~ 207 (382)
T 2vx3_A 132 CLVFEMLS-YNLYDLLRNTNF---RGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGS 207 (382)
T ss_dssp EEEEECCC-CBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred EEEEecCC-CCHHHHHhhcCc---CCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence 99999995 699999987532 33889999999999999999999 47899999999999994 478899999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHH
Q 001171 985 DRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQ 1056 (1133)
Q Consensus 985 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~ 1056 (1133)
++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...+..+....+.+.
T Consensus 208 a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~ 273 (382)
T 2vx3_A 208 SCQLGQ------RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEV 273 (382)
T ss_dssp CEETTC------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred ceeccc------ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 975421 223467899999999999999999999999999999999999999877776666655553
No 258
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=8.3e-37 Score=353.38 Aligned_cols=253 Identities=13% Similarity=0.084 Sum_probs=176.9
Q ss_pred cCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc----CHHHHHHHHHHHhhc--cCCCeeeEE-------EEEe
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI----DENTFRKEAEALGKV--KHRNLTVLR-------GYYA 902 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----~~~~~~~E~~~l~~l--~hpniv~l~-------~~~~ 902 (1133)
.+|++.+.||+|+||.||+|.+. +|+.||||++..... ..+.+.+|+++++.+ +||||++++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 45889999999999999999875 789999999986443 245677886655555 599988755 3433
Q ss_pred CCC----------------CcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHH------HHHHHHHHHHHHHHhcCCce
Q 001171 903 GPP----------------DVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMR------HLISLGLARGLSFLHSLDMV 960 (1133)
Q Consensus 903 ~~~----------------~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~------~~i~~~ia~~L~~LH~~~iv 960 (1133)
... ...++||||++ |+|.+++...... +++..+ ..++.||++||+|||++||+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~iv 216 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFV----YVFRGDEGILALHILTAQLIRLAANLQSKGLV 216 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHS----CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccc----cchhhhhhhhhHHHHHHHHHHHHHHHHHCCCc
Confidence 221 22589999998 8999999875432 455556 77889999999999999999
Q ss_pred ecccCccceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCC--CCCCCCCchhHHHHHHHHHHhCC
Q 001171 961 HGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAAST--GQPTKEADVYSFGIVLLEILTGR 1038 (1133)
Q Consensus 961 H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlG~il~el~tg~ 1038 (1133)
||||||+|||++.++.+||+|||+++.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~ 290 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGT------RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTC------EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCC------CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence 999999999999999999999999975421 1113456799999999987 67899999999999999999999
Q ss_pred CCCccCChhhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1039 KPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1039 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
.||.......... ............... +. ....... ...+++.+||+.||++||++.|+++
T Consensus 291 ~Pf~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 291 LPFGLVTPGIKGS-----WKRPSLRVPGTDSLA-FG-SCTPLPD--FVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp CSTTBCCTTCTTC-----CCBCCTTSCCCCSCC-CT-TSSCCCH--HHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCCCcCcccccc-----hhhhhhhhccccccc-hh-hccCCCH--HHHHHHHHHcCCChhhCCCHHHHhc
Confidence 9997553321100 000000000000000 00 0000011 1237889999999999999999975
No 259
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=6.9e-36 Score=333.12 Aligned_cols=247 Identities=21% Similarity=0.305 Sum_probs=193.0
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---CHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---DENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~ 909 (1133)
..++|++.+.||+|+||.||+|.+. +++.||+|++..... ....+.+|+..+.++ +||||+++++++... +..+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~-~~~~ 87 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED-DHML 87 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEET-TEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecC-CeEE
Confidence 3467999999999999999999886 689999999875322 346788899999999 999999999999876 4559
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC---------------
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD--------------- 974 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~--------------- 974 (1133)
+||||+++++|.+++...... ...+++..+..++.||++||+|||++||+||||||+||+++.+
T Consensus 88 lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 88 IQNEYCNGGSLADAISENYRI-MSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EEEECCTTCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-----------------
T ss_pred EEEEecCCCcHHHHHHhhccc-ccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 999999999999999875431 1348999999999999999999999999999999999999844
Q ss_pred ----CceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhH
Q 001171 975 ----FEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDI 1049 (1133)
Q Consensus 975 ----~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~ 1049 (1133)
..+|++|||.++.... .....||+.|+|||++.+. .++.++||||+||++|||++|.+|+.... .
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---~ 236 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISS-------PQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---Q 236 (289)
T ss_dssp ---CCCEEECCCTTCEETTC-------SCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH---H
T ss_pred cCCceEEEEcccccccccCC-------ccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh---H
Confidence 4789999999865422 1234589999999999765 55689999999999999999988764321 1
Q ss_pred HHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1050 VKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
...+ ......... .. ... ...+++.+||+.||++||++.|++++
T Consensus 237 ~~~~----~~~~~~~~~-~~------~~~------~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 237 WHEI----RQGRLPRIP-QV------LSQ------EFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp HHHH----HTTCCCCCS-SC------CCH------HHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HHHH----HcCCCCCCC-cc------cCH------HHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 1111 111111110 00 011 12378889999999999999999864
No 260
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=3.5e-35 Score=338.77 Aligned_cols=279 Identities=19% Similarity=0.259 Sum_probs=197.3
Q ss_pred HHHHHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCC---
Q 001171 831 ETLEATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGPPD--- 906 (1133)
Q Consensus 831 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~--- 906 (1133)
......++|++.++||+|+||.||+|+++ +|+.||||++...........+|++.++.++||||+++++++.....
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~ 96 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR 96 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence 34567789999999999999999999885 68999999997665555677889999999999999999999854222
Q ss_pred ---cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHh--cCCceecccCccceeeCC-CCceEEe
Q 001171 907 ---VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLH--SLDMVHGDIKPQNVLFDA-DFEAHLS 980 (1133)
Q Consensus 907 ---~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH--~~~ivH~Dlkp~NIll~~-~~~~kl~ 980 (1133)
..++||||+++ ++.+.+..... ....+++..+..++.|++.|++||| +.||+||||||+||+++. ++.+||+
T Consensus 97 ~~~~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~ 174 (360)
T 3e3p_A 97 RDIYLNVVMEYVPD-TLHRCCRNYYR-RQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLC 174 (360)
T ss_dssp TCEEEEEEEECCSC-BHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEEC
T ss_pred cceeEEEEeecccc-cHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEe
Confidence 25799999975 56555543221 2345888999999999999999999 999999999999999997 8999999
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCccCccccCCCC-CCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhh
Q 001171 981 EFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQ-PTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQR 1059 (1133)
Q Consensus 981 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~ 1059 (1133)
|||+++..... .......||+.|+|||++.+.. ++.++||||+||++|||++|+.||...........+.+....
T Consensus 175 Dfg~a~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~ 250 (360)
T 3e3p_A 175 DFGSAKKLSPS----EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGC 250 (360)
T ss_dssp CCTTCBCCCTT----SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCC
T ss_pred eCCCceecCCC----CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCC
Confidence 99999754322 2233457899999999986554 899999999999999999999999877766666555543322
Q ss_pred cccc--ccccCCcCC---CCCCChhHHH---------HHHhHhhhhccCCCCCCCCCCHHHHHHH--HhcCc
Q 001171 1060 GQIS--ELLEPGLLE---LDPESSEWEE---------FLLGVKVGLLCTAPDPLDRPSMADIVFM--LEGCR 1115 (1133)
Q Consensus 1060 ~~~~--~~~~~~~~~---~~~~~~~~~~---------~~~~~~li~~Cl~~dP~~RPs~~evl~~--Le~~~ 1115 (1133)
.... ...++.... .......+.. -....+++.+||+.||.+||++.|++++ +++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~ 322 (360)
T 3e3p_A 251 PSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELH 322 (360)
T ss_dssp CCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGG
T ss_pred CCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccC
Confidence 1100 000000000 0000011111 1123389999999999999999999976 44443
No 261
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=1.1e-35 Score=366.60 Aligned_cols=256 Identities=22% Similarity=0.366 Sum_probs=202.9
Q ss_pred HhcCCCcccccccccceeEEEEEEC----CceEEEEEEcccCCcC--HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ----DGMVLSIRRLRDGTID--ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVR 908 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~--~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 908 (1133)
..++|++.+.||+|+||.||+|.+. .+..||+|++...... .+.+.+|+.++++++||||+++++++.+ +..
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~--~~~ 465 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--NPV 465 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSC
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec--Cce
Confidence 3467899999999999999999874 2578999998653322 3678899999999999999999999854 335
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||+++|+|.++++..+ ..+++..+..++.||++||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus 466 ~lv~E~~~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~ 541 (656)
T 2j0j_A 466 WIIMELCTLGELRSFLQVRK----FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 541 (656)
T ss_dssp EEEEECCTTCBHHHHHHHTT----TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred EEEEEcCCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeec
Confidence 89999999999999998643 24889999999999999999999999999999999999999999999999999754
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 989 IATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
.... ........+++.|+|||++.+..++.++|||||||++|||++ |..||......+....+...... . ..
T Consensus 542 ~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~----~-~~ 614 (656)
T 2j0j_A 542 EDST--YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL----P-MP 614 (656)
T ss_dssp CC------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCC----C-CC
T ss_pred CCCc--ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCC----C-CC
Confidence 3221 122233457789999999988889999999999999999997 99999877666655554432110 0 00
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCc
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCR 1115 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~ 1115 (1133)
+.. . ....+++.+||+.||++||++.|+++.|+.+.
T Consensus 615 ~~~------~------~~l~~li~~~l~~dP~~RPs~~el~~~L~~il 650 (656)
T 2j0j_A 615 PNC------P------PTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 650 (656)
T ss_dssp TTC------C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ccc------c------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 000 0 11237889999999999999999999998754
No 262
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=336.76 Aligned_cols=268 Identities=19% Similarity=0.284 Sum_probs=192.2
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCC---------
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGP--------- 904 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~--------- 904 (1133)
.++|++.+.||+|+||.||+|.+. +|+.||+|++..... ..+.+.+|++++++++||||+++++++...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 458999999999999999999886 489999999865432 246788999999999999999999988432
Q ss_pred ----CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC-CCCceEE
Q 001171 905 ----PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD-ADFEAHL 979 (1133)
Q Consensus 905 ----~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kl 979 (1133)
....++||||++ |+|.+++.. ..+++..+..++.||+.||+|||++||+||||||+||+++ .++.+||
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl 162 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ------GPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKI 162 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhc------CCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEE
Confidence 245689999997 699999864 2378999999999999999999999999999999999997 5679999
Q ss_pred eccCcccccccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhh
Q 001171 980 SEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQ 1058 (1133)
Q Consensus 980 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 1058 (1133)
+|||+++................++..|+|||++.+ ..++.++||||+||++|||++|+.||......+....+.....
T Consensus 163 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 242 (320)
T 2i6l_A 163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIP 242 (320)
T ss_dssp CCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSC
T ss_pred ccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcC
Confidence 999999765332222223344567899999998755 6789999999999999999999999987666554444433211
Q ss_pred hcc----------ccccccCCcCCCCCCChhH-HHH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1059 RGQ----------ISELLEPGLLELDPESSEW-EEF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1059 ~~~----------~~~~~~~~~~~~~~~~~~~-~~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... +.................. ..+ ....+++.+|++.||++||+++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 000 0000000000000000000 000 112378999999999999999999874
No 263
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=2e-35 Score=329.15 Aligned_cols=252 Identities=20% Similarity=0.307 Sum_probs=200.6
Q ss_pred HHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC---cCHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEE
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT---IDENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~ 909 (1133)
...++|++.+.||+|+||.||+|... +++.||+|++.... ...+.+.+|++++++++||||+++++++... ...+
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~ 97 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-SSFY 97 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCC-CeEE
Confidence 45678999999999999999999876 68999999986432 3457889999999999999999999999876 4559
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC---CceEEeccCccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD---FEAHLSEFGLDR 986 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~---~~~kl~Dfg~a~ 986 (1133)
+||||+++++|.+++.... .+++..+..++.||+.||+|||++||+||||||+||+++.+ +.+||+|||+++
T Consensus 98 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EEECCCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEEccCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 9999999999999987643 38899999999999999999999999999999999999764 469999999987
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
..... .......|++.|+|||++.+ .++.++||||+|+++|+|++|+.||......+....+... ......
T Consensus 173 ~~~~~----~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~----~~~~~~ 243 (287)
T 2wei_A 173 CFQQN----TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETG----KYAFDL 243 (287)
T ss_dssp TBCCC----SSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC----CCCCCS
T ss_pred eecCC----CccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcC----CCCCCc
Confidence 54221 12233458889999999865 4899999999999999999999999876665554443332 111000
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
+.... ... ...+++.+|++.||++||++.|++++
T Consensus 244 -~~~~~---~~~------~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 244 -PQWRT---ISD------DAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp -GGGTT---SCH------HHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred -hhhhh---cCH------HHHHHHHHHcccChhhCcCHHHHhcC
Confidence 00000 001 12378999999999999999999974
No 264
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1e-35 Score=337.35 Aligned_cols=249 Identities=19% Similarity=0.305 Sum_probs=192.1
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc---------CHHHHHHHHHHHhhccCCCeeeEEEEEeCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI---------DENTFRKEAEALGKVKHRNLTVLRGYYAGP 904 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~hpniv~l~~~~~~~ 904 (1133)
..++|.+.+.||+|+||.||+|.+. +++.||||++..... ....+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 3467999999999999999999875 589999999864321 123578999999999999999999999765
Q ss_pred CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc---eEEec
Q 001171 905 PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE---AHLSE 981 (1133)
Q Consensus 905 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~---~kl~D 981 (1133)
. .++||||+++++|.+++... ..+++..+..++.||+.||+|||++||+||||||+||+++.++. +||+|
T Consensus 88 ~--~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 88 D--YYIVLELMEGGELFDKVVGN-----KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp S--EEEEEECCTTEETHHHHSTT-----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred c--eEEEEecCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 3 59999999999999998753 34889999999999999999999999999999999999987665 99999
Q ss_pred cCcccccccCCCCCCCCCCCCCCCCccCccccC---CCCCCCCCchhHHHHHHHHHHhCCCCCccCChh-hHHHHHHHHh
Q 001171 982 FGLDRLAIATPAEASSSTTPIGSLGYVSPEAAS---TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDE-DIVKWVKKQL 1057 (1133)
Q Consensus 982 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~-~~~~~~~~~~ 1057 (1133)
||+++..... .......||+.|+|||++. ...++.++||||+||++|||++|+.||...... .....+...
T Consensus 161 fg~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~- 235 (322)
T 2ycf_A 161 FGHSKILGET----SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG- 235 (322)
T ss_dssp CTTCEECCCC----HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHT-
T ss_pred Cccceecccc----cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhC-
Confidence 9998754221 1112346899999999973 567899999999999999999999999754432 232222221
Q ss_pred hhccccccccCCcCCCCCCChhHHHH-HHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1058 QRGQISELLEPGLLELDPESSEWEEF-LLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
.... .. ..+... ....+++.+||+.||++||++.|+++
T Consensus 236 ---~~~~-~~----------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 236 ---KYNF-IP----------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp ---CCCC-CH----------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---cccc-Cc----------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 1100 00 000001 11237899999999999999999984
No 265
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-35 Score=360.69 Aligned_cols=337 Identities=19% Similarity=0.207 Sum_probs=223.6
Q ss_pred CCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCcccccee
Q 001171 361 SLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETL 440 (1133)
Q Consensus 361 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 440 (1133)
.+++++.|++++|.+..+.+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35678888888888888777778888888888888888887777788888888888888888888777777888888888
Q ss_pred ecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCC
Q 001171 441 NLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLS 520 (1133)
Q Consensus 441 ~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 520 (1133)
+|++|.|++..+..|.++++|++|+|++|.+++..|..|+.+++|++|++++|.+++. .+..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 8888888765555667777777777777777777777777777777777777777653 2444566666666666655
Q ss_pred CCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCcccc
Q 001171 521 GELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELG 600 (1133)
Q Consensus 521 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 600 (1133)
+ +...++|+.|++++|.+....+.. .++|+.|+|++|.+++ +..++
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---------------------------~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV---------------------------NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC---------------------------CSCCCEEECCSSCCCC--CGGGG
T ss_pred c-----ccCCchhheeeccCCccccccccc---------------------------CCCCCEEECCCCCCCC--Chhhc
Confidence 2 223344555555555554322211 1345555555555543 24455
Q ss_pred CCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCccccccc
Q 001171 601 ACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTL 680 (1133)
Q Consensus 601 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 680 (1133)
.+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 55555555555555555555555555666666666666653 4555555666666666666666 455556666666666
Q ss_pred ccccccccccCCccccccccCcccccccccccccCCccccCCCCCCcccCcCccccCCCC
Q 001171 681 NLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIPKMLSSRFNDPSIFAMNRELCGKPL 740 (1133)
Q Consensus 681 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lcg~~~ 740 (1133)
+|++|++++. | +..+++|+.|++++|+++|..+..+...+.... +.++...|+.+.
T Consensus 330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~-~~~~~~~C~~~~ 385 (597)
T 3oja_B 330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA-VDDADQHCKIDY 385 (597)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT-BCCCCCCCCTTC
T ss_pred ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhc-cccccccCCcch
Confidence 6666666643 2 456677788888888887776555444444444 667778888653
No 266
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=3.6e-35 Score=339.35 Aligned_cols=258 Identities=20% Similarity=0.281 Sum_probs=197.6
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc----
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV---- 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~---- 907 (1133)
.++|.+.+.||+|+||.||+|.+. +|+.||||++...... .+.+.+|++++++++||||+++++++......
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 458999999999999999999775 6899999999754333 35788999999999999999999999765432
Q ss_pred -EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 908 -RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 908 -~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
.++||||++ ++|.+++.. .+++..+..++.||+.||+|||+.||+||||||+||+++.++.+||+|||+++
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 192 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM-------EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLAR 192 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC-
T ss_pred eEEEEEcccc-ccHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCccc
Confidence 389999996 688877642 38899999999999999999999999999999999999999999999999986
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...+..+....+.+...... .+.
T Consensus 193 ~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~-~~~ 265 (371)
T 4exu_A 193 HADA------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPG-TEF 265 (371)
T ss_dssp -------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC-HHH
T ss_pred cccc------CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCc-HHH
Confidence 4321 2234578999999999877 6789999999999999999999999987766665555544322110 000
Q ss_pred ccC-----------CcCCCCCCChhHHHH-----HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 LEP-----------GLLELDPESSEWEEF-----LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~-----------~~~~~~~~~~~~~~~-----~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... ..... ....+... ....+++.+|++.||++||+++|++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 266 VQKLNDKAAKSYIQSLPQT--PRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp HTTCSCHHHHHHHHHSCCC--CCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHhhhhhhhhhhhccCCC--cchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 000 00000 00001110 122378999999999999999999976
No 267
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=329.51 Aligned_cols=252 Identities=23% Similarity=0.374 Sum_probs=192.3
Q ss_pred CCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 838 QFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
+|....+||+|+||.||+|.+. +++.||+|++..... ..+.+.+|++++++++||||+++++++... ...++||||+
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~ 101 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSEN-GFIKIFMEQV 101 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECC
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeC-CcEEEEEEeC
Confidence 4555668999999999999874 688999999875432 356789999999999999999999999875 4558999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC-CCceEEeccCcccccccCCCC
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA-DFEAHLSEFGLDRLAIATPAE 994 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~ 994 (1133)
++++|.+++..... ....++..+..++.||+.||+|||+.||+||||||+||+++. ++.+||+|||+++.....
T Consensus 102 ~~~~L~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~--- 176 (295)
T 2clq_A 102 PGGSLSALLRSKWG--PLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI--- 176 (295)
T ss_dssp SEEEHHHHHHHTTC--CCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred CCCCHHHHHHhhcc--CCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCC---
Confidence 99999999986432 234678888899999999999999999999999999999987 899999999998754321
Q ss_pred CCCCCCCCCCCCccCccccCCCC--CCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCC
Q 001171 995 ASSSTTPIGSLGYVSPEAASTGQ--PTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLE 1072 (1133)
Q Consensus 995 ~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1133)
........|++.|+|||++.+.. ++.++||||||+++|||++|+.||............... ...... +....
T Consensus 177 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~--~~~~~~-~~~~~-- 251 (295)
T 2clq_A 177 NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGM--FKVHPE-IPESM-- 251 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHH--HCCCCC-CCTTS--
T ss_pred CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcc--cccccc-ccccC--
Confidence 11233457899999999986543 789999999999999999999999654332221111111 110000 11000
Q ss_pred CCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1073 LDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1073 ~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.. ...+++.+||+.||++||++.|++++
T Consensus 252 ----~~------~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 252 ----SA------EAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp ----CH------HHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred ----CH------HHHHHHHHHccCChhhCCCHHHHhcC
Confidence 01 12278899999999999999999864
No 268
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.1e-35 Score=339.90 Aligned_cols=254 Identities=19% Similarity=0.318 Sum_probs=193.2
Q ss_pred HhcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcC--HHHHHHHHHH-HhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTID--ENTFRKEAEA-LGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~--~~~~~~E~~~-l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
..++|++.+.||+|+||.||+|.+ .+|+.||||++...... ...+..|..+ ++.++||||+++++++.... ..++
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~-~~~l 127 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG-DVWI 127 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSS-CEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCC-cEEE
Confidence 356899999999999999999987 46999999999754333 3445556665 77889999999999998764 4599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC-CceecccCccceeeCCCCceEEeccCcccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL-DMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
||||+++ +|.+++...... ...+++..+..++.||+.||+|||++ ||+||||||+||+++.++.+||+|||+++...
T Consensus 128 v~e~~~~-~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 128 CMELMDT-SLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp EECCCSE-EHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred EHHHhhC-cHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 9999974 999988754321 24589999999999999999999987 99999999999999999999999999987542
Q ss_pred cCCCCCCCCCCCCCCCCccCccccC----CCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccc
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAAS----TGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISEL 1065 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1133)
.. .......||+.|+|||++. ...++.++|||||||++|||++|+.||....... ..+.+..... ....
T Consensus 206 ~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~--~~~~~~~~~~-~~~~ 278 (340)
T 3an0_A 206 DS----VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF--QQLKQVVEEP-SPQL 278 (340)
T ss_dssp CH----HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH--HHHHHHHHSC-CCCC
T ss_pred cc----cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchH--HHHHHHhcCC-CCCC
Confidence 21 1122346899999999964 3468899999999999999999999997533221 1122221111 1111
Q ss_pred ccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1066 LEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.... .. ....+++.+||+.||++||++.|++++
T Consensus 279 ~~~~----------~~--~~~~~li~~~l~~dp~~Rps~~ell~h 311 (340)
T 3an0_A 279 PADK----------FS--AEFVDFTSQCLKKNSKERPTYPELMQH 311 (340)
T ss_dssp CGGG----------SC--HHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred Cccc----------CC--HHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 1000 00 112378899999999999999999863
No 269
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=4.3e-35 Score=337.04 Aligned_cols=266 Identities=18% Similarity=0.267 Sum_probs=199.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCC----CCcE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGP----PDVR 908 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~----~~~~ 908 (1133)
.++|++.+.||+|+||.||+|.+. +|+.||||++..... ....+.+|++++++++||||+++++++... ....
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999875 689999999964332 235678999999999999999999988653 2456
Q ss_pred EEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccc
Q 001171 909 LLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLA 988 (1133)
Q Consensus 909 ~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~ 988 (1133)
++||||++ |+|.+++... .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus 90 ~lv~e~~~-~~L~~~~~~~------~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ------MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARII 162 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEeccC-ccHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEeccccccc
Confidence 99999996 6999998762 3889999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCC-------CCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhc
Q 001171 989 IATPAEA-------SSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRG 1060 (1133)
Q Consensus 989 ~~~~~~~-------~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 1060 (1133)
....... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...+..+....+.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (353)
T 2b9h_A 163 DESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTP 242 (353)
T ss_dssp C----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred ccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCC
Confidence 4322111 11234578999999998754 678999999999999999999999998776655554444432221
Q ss_pred cccccccC-----------CcCCCCCCChhHH----HH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1061 QISELLEP-----------GLLELDPESSEWE----EF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1061 ~~~~~~~~-----------~~~~~~~~~~~~~----~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
........ ....... .... .+ ....+++.+||+.||++||+++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (353)
T 2b9h_A 243 HSDNDLRCIESPRAREYIKSLPMYPA--APLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH 306 (353)
T ss_dssp CSTTTTTTCCCHHHHHHHHTSCCCCC--CCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred chhccccccccchhhHHhhcccCCCC--cchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 11000000 0000000 0000 00 112378999999999999999999975
No 270
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-34 Score=334.03 Aligned_cols=289 Identities=20% Similarity=0.244 Sum_probs=239.8
Q ss_pred cccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEE
Q 001171 337 NVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIV 416 (1133)
Q Consensus 337 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 416 (1133)
.++++++|++++|.+....+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999996666678999999999999999999888899999999999999999999999999999999999
Q ss_pred EccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCc
Q 001171 417 SLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFS 496 (1133)
Q Consensus 417 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 496 (1133)
+|++|.++...+..|.++++|++|++++|++++..+..|..+++|++|++++|++++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999977667789999999999999999988888999999999999999999864 4677899999999999987
Q ss_pred cccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccc
Q 001171 497 GKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYG 576 (1133)
Q Consensus 497 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 576 (1133)
+. ...++|+.|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|++|+|++|.+++..|..+.
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 53 3346899999999999843 432 357999999999999864 5788899999999999999887777888
Q ss_pred cccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCccc
Q 001171 577 FLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLS 640 (1133)
Q Consensus 577 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 640 (1133)
.+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.++
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 88888888888887773 4545555666666666666655 24444555555555555555554
No 271
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=2.8e-35 Score=330.78 Aligned_cols=255 Identities=22% Similarity=0.351 Sum_probs=189.0
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeCC----------
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAGP---------- 904 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~---------- 904 (1133)
.++|++.+.||+|+||.||+|+.. +|+.||||++.......+.+.+|++++++++||||+++++++...
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence 467999999999999999999875 689999999976544457789999999999999999999987542
Q ss_pred --CCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEecc
Q 001171 905 --PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEF 982 (1133)
Q Consensus 905 --~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Df 982 (1133)
....++||||+++|+|.+++.... ..+++..++.++.||++||+|||++||+||||||+||+++.++.+||+||
T Consensus 85 ~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~df 160 (303)
T 1zy4_A 85 KKKSTLFIQMEYCENGTLYDLIHSEN----LNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDF 160 (303)
T ss_dssp -CEEEEEEEEECCCSCBHHHHHHHSC----GGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred ccCCceEEEEecCCCCCHHHhhhccc----cccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeC
Confidence 245589999999999999998643 23678889999999999999999999999999999999999999999999
Q ss_pred CcccccccCCC-----------CCCCCCCCCCCCCccCccccCCC-CCCCCCchhHHHHHHHHHHhCCCCCccCChhhHH
Q 001171 983 GLDRLAIATPA-----------EASSSTTPIGSLGYVSPEAASTG-QPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIV 1050 (1133)
Q Consensus 983 g~a~~~~~~~~-----------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~ 1050 (1133)
|+++....... .........|++.|+|||++.+. .++.++||||+||++|||++ ||.... +..
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~--~~~ 235 (303)
T 1zy4_A 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM--ERV 235 (303)
T ss_dssp CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH--HHH
T ss_pred cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch--hHH
Confidence 99875432110 01122345789999999999764 68999999999999999998 553211 111
Q ss_pred HHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1051 KWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
... +...... ....+... .. .. ....+++.+||+.||.+||++.|++++
T Consensus 236 ~~~-~~~~~~~--~~~~~~~~---~~---~~--~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 236 NIL-KKLRSVS--IEFPPDFD---DN---KM--KVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHH-HHHHSTT--CCCCTTCC---TT---TS--HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHH-Hhccccc--cccCcccc---cc---ch--HHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 111 1111111 00111110 00 00 112378999999999999999999974
No 272
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=4.7e-36 Score=344.34 Aligned_cols=266 Identities=16% Similarity=0.277 Sum_probs=199.7
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC------------------HHHHHHHHHHHhhccCCCeeeE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID------------------ENTFRKEAEALGKVKHRNLTVL 897 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~------------------~~~~~~E~~~l~~l~hpniv~l 897 (1133)
.++|++.+.||+|+||.||+|.+ +|+.||+|++...... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 45899999999999999999988 8999999998643221 1789999999999999999999
Q ss_pred EEEEeCCCCcEEEEEeccCCCCHHHHHHhhc---cCCCCCCChHHHHHHHHHHHHHHHHHhc-CCceecccCccceeeCC
Q 001171 898 RGYYAGPPDVRLLVYDYMPNGNLATLLQEAS---HQDGHVLNWPMRHLISLGLARGLSFLHS-LDMVHGDIKPQNVLFDA 973 (1133)
Q Consensus 898 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---~~~~~~l~~~~~~~i~~~ia~~L~~LH~-~~ivH~Dlkp~NIll~~ 973 (1133)
++++... +..++||||+++|+|.+++.... ......+++..+..++.||+.||+|||+ .||+||||||+||+++.
T Consensus 109 ~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~ 187 (348)
T 2pml_X 109 EGIITNY-DEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDK 187 (348)
T ss_dssp SEEEESS-SEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECT
T ss_pred EEEEeeC-CeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcC
Confidence 9999876 45599999999999998832211 1113458999999999999999999999 99999999999999999
Q ss_pred CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCC-CCCC-CCchhHHHHHHHHHHhCCCCCccCCh-hhHH
Q 001171 974 DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTG-QPTK-EADVYSFGIVLLEILTGRKPVMFTQD-EDIV 1050 (1133)
Q Consensus 974 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DvwSlG~il~el~tg~~Pf~~~~~-~~~~ 1050 (1133)
++.+||+|||.++..... ......|++.|+|||++.+. .++. ++||||+||++|||++|+.||..... .+..
T Consensus 188 ~~~~kl~dfg~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~ 262 (348)
T 2pml_X 188 NGRVKLSDFGESEYMVDK-----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELF 262 (348)
T ss_dssp TSCEEECCCTTCEECBTT-----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHH
T ss_pred CCcEEEeccccccccccc-----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHH
Confidence 999999999998754322 23445789999999999877 5555 99999999999999999999976554 4433
Q ss_pred HHHHHHhhhccccccccCCcCCCCCCC--hhHHHH-HHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1051 KWVKKQLQRGQISELLEPGLLELDPES--SEWEEF-LLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
..+... ...++.............. ...... ....+++.+||+.||.+||++.|++++
T Consensus 263 ~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h 323 (348)
T 2pml_X 263 NNIRTK--NIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH 323 (348)
T ss_dssp HHHTSC--CCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHhcc--CcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 333221 0111100000000000000 000001 112378999999999999999999874
No 273
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.4e-34 Score=333.09 Aligned_cols=264 Identities=19% Similarity=0.296 Sum_probs=201.4
Q ss_pred hcCCCcccccccccceeEEEEEEC-Cc-eEEEEEEcccCCcCHHHHHHHHHHHhhccCCC------eeeEEEEEeCCCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DG-MVLSIRRLRDGTIDENTFRKEAEALGKVKHRN------LTVLRGYYAGPPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g-~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~l~~~~~~~~~~ 907 (1133)
.++|++.+.||+|+||.||+|... ++ +.||+|++.......+.+.+|++++++++|++ ++.+.+++.... .
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG-H 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT-E
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC-e
Confidence 458999999999999999999874 34 79999999765555677889999999998766 889999887654 5
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceee----------------
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLF---------------- 971 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll---------------- 971 (1133)
.++||||+ ++++.+++..... ..+++..+..++.||+.||+|||++||+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNF---QPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccccccccccc
Confidence 59999999 6778887776432 348999999999999999999999999999999999999
Q ss_pred ---CCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhh
Q 001171 972 ---DADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDED 1048 (1133)
Q Consensus 972 ---~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~ 1048 (1133)
+.++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......+
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 246 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHE------HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE 246 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTS------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred ccccCCCcEEEeecCccccccc------cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 5678999999999875321 2234579999999999999999999999999999999999999998776666
Q ss_pred HHHHHHHHhhhccc--------cccccCCcCCCCCCC------------------hhHHHHHHhHhhhhccCCCCCCCCC
Q 001171 1049 IVKWVKKQLQRGQI--------SELLEPGLLELDPES------------------SEWEEFLLGVKVGLLCTAPDPLDRP 1102 (1133)
Q Consensus 1049 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------------------~~~~~~~~~~~li~~Cl~~dP~~RP 1102 (1133)
....+.+....... ............... .....-....+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 326 (355)
T 2eu9_A 247 HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI 326 (355)
T ss_dssp HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc
Confidence 55555443221100 000000000000000 0001112234899999999999999
Q ss_pred CHHHHHHH
Q 001171 1103 SMADIVFM 1110 (1133)
Q Consensus 1103 s~~evl~~ 1110 (1133)
|+.|++++
T Consensus 327 t~~e~l~h 334 (355)
T 2eu9_A 327 TLAEALLH 334 (355)
T ss_dssp CHHHHTTS
T ss_pred CHHHHhcC
Confidence 99999864
No 274
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=331.20 Aligned_cols=256 Identities=20% Similarity=0.264 Sum_probs=195.7
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEeCCCC-----
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYAGPPD----- 906 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~----- 906 (1133)
.++|.+.+.||+|+||.||+|.++ +|+.||||++...... .+.+.+|++++++++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 357999999999999999999875 6999999999754333 3567899999999999999999999976533
Q ss_pred cEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 907 VRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 907 ~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
..++||||++ ++|.+++.. .+++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL-------KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS-------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred eEEEEecccc-CCHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeeccccc
Confidence 2489999996 677766532 38899999999999999999999999999999999999999999999999986
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCC-CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcc----
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAAST-GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQ---- 1061 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~---- 1061 (1133)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...+..+....+.+......
T Consensus 175 ~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 248 (353)
T 3coi_A 175 HADA------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFV 248 (353)
T ss_dssp C--------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHH
T ss_pred CCCC------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence 5321 1234578999999999876 6789999999999999999999999987766555544443221110
Q ss_pred --------------ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1062 --------------ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1062 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
++......+....... . ....+++.+|++.||++||+++|++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRA---S--PQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp TTCSCHHHHHHHHTSCBCSSCCTTTTCTTS---C--HHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHhhHHHHHHHHhCcCCCCccHHHhcCCc---C--HHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0000000111110110 0 122378999999999999999999975
No 275
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=4.7e-35 Score=330.53 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=190.6
Q ss_pred HhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCcC---HHHHHHHHHHHhhcc--CCCeeeEEEEEeCCCCcEE
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---ENTFRKEAEALGKVK--HRNLTVLRGYYAGPPDVRL 909 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---~~~~~~E~~~l~~l~--hpniv~l~~~~~~~~~~~~ 909 (1133)
..++|++.+.||+|+||.||+|.+++++.||||++...... .+.+.+|++++++++ ||||+++++++... ...+
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~-~~~~ 104 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-QYIY 104 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECS-SEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecC-CEEE
Confidence 35679999999999999999999888999999999654333 367889999999997 59999999999876 4568
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAI 989 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 989 (1133)
+||| +.+++|.+++.... .+++..+..++.||++||+|||+.||+||||||+||+++ ++.+||+|||+++...
T Consensus 105 lv~e-~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~ 177 (313)
T 3cek_A 105 MVME-CGNIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ 177 (313)
T ss_dssp EEEC-CCSEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC--
T ss_pred EEEe-cCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeecccccccc
Confidence 9999 55889999998643 478999999999999999999999999999999999996 4899999999987543
Q ss_pred cCCCCCCCCCCCCCCCCccCccccCC-----------CCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhh
Q 001171 990 ATPAEASSSTTPIGSLGYVSPEAAST-----------GQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQ 1058 (1133)
Q Consensus 990 ~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 1058 (1133)
.... ........|++.|+|||++.+ ..++.++||||+||++|||++|+.||....... ..+.....
T Consensus 178 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~--~~~~~~~~ 254 (313)
T 3cek_A 178 PDTT-SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI--SKLHAIID 254 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH--HHHHHHHC
T ss_pred Cccc-cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH--HHHHHHHh
Confidence 2211 112234568999999999865 467889999999999999999999996543221 11112111
Q ss_pred hccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHH
Q 001171 1059 RGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFML 1111 (1133)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~L 1111 (1133)
..... .++.... ....+++.+||+.||++||++.|++++-
T Consensus 255 ~~~~~--------~~~~~~~-----~~l~~li~~~l~~dp~~Rps~~ell~h~ 294 (313)
T 3cek_A 255 PNHEI--------EFPDIPE-----KDLQDVLKCCLKRDPKQRISIPELLAHP 294 (313)
T ss_dssp TTSCC--------CCCCCSC-----HHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred ccccc--------CCcccch-----HHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence 11000 0001100 1123788899999999999999999753
No 276
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=5e-35 Score=339.22 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=169.2
Q ss_pred hcCCCcccccccccceeEEEEEE-CCceEEEEEEcccCCcCHHHHHHHHHHHhhcc-----------CCCeeeEEEEEeC
Q 001171 836 TRQFDEENVLSRGRYGLIFKASY-QDGMVLSIRRLRDGTIDENTFRKEAEALGKVK-----------HRNLTVLRGYYAG 903 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-----------hpniv~l~~~~~~ 903 (1133)
.++|++.+.||+|+||.||+|.+ .+++.||||++.......+.+.+|++++++++ ||||+++++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 45799999999999999999987 46899999999865555678899999999986 8999999999875
Q ss_pred CC---CcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC-CceecccCccceeeC------C
Q 001171 904 PP---DVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL-DMVHGDIKPQNVLFD------A 973 (1133)
Q Consensus 904 ~~---~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-~ivH~Dlkp~NIll~------~ 973 (1133)
.. ...++||||+ +++|.+++..... ..+++..+..++.||+.||+|||++ ||+||||||+||+++ .
T Consensus 98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~ 173 (373)
T 1q8y_A 98 KGPNGVHVVMVFEVL-GENLLALIKKYEH---RGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPEN 173 (373)
T ss_dssp EETTEEEEEEEECCC-CEEHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTT
T ss_pred cCCCCceEEEEEecC-CCCHHHHHHHhhc---cCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcC
Confidence 32 2568999999 8999999987432 3388999999999999999999998 999999999999994 4
Q ss_pred CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCC
Q 001171 974 DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQ 1045 (1133)
Q Consensus 974 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~ 1045 (1133)
.+.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 174 ~~~~kl~Dfg~a~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 239 (373)
T 1q8y_A 174 LIQIKIADLGNACWYDE------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDE 239 (373)
T ss_dssp EEEEEECCCTTCEETTB------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----
T ss_pred cceEEEcccccccccCC------CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCc
Confidence 45799999999875422 2234578999999999999899999999999999999999999997543
No 277
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=2.6e-35 Score=335.68 Aligned_cols=255 Identities=21% Similarity=0.345 Sum_probs=169.6
Q ss_pred HhcCCCcc-cccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCeeeEEEEEeC---CCCcEE
Q 001171 835 ATRQFDEE-NVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLTVLRGYYAG---PPDVRL 909 (1133)
Q Consensus 835 ~~~~~~~~-~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~---~~~~~~ 909 (1133)
..++|.+. ++||+|+||.||+|.++ +|+.||||++.... ....+....++.+.||||+++++++.. .....+
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 102 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP---KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL 102 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH---HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH---HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence 35678885 46999999999999886 68999999986532 222333334666799999999999864 234468
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC---CCceEEeccCccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA---DFEAHLSEFGLDR 986 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~a~ 986 (1133)
+||||+++|+|.+++..... ..+++..++.++.||+.||+|||++||+||||||+||+++. ++.+||+|||+++
T Consensus 103 lv~e~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~ 179 (336)
T 3fhr_A 103 IIMECMEGGELFSRIQERGD---QAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK 179 (336)
T ss_dssp EEEECCTTEEHHHHHHTC-C---CCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred EEEeccCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccce
Confidence 99999999999999986432 35899999999999999999999999999999999999976 4559999999986
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
.... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||..................... ...
T Consensus 180 ~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~ 253 (336)
T 3fhr_A 180 ETTQ-----NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQY-GFP 253 (336)
T ss_dssp EC---------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------CCC
T ss_pred eccc-----cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhcccc-ccC
Confidence 5421 1223457899999999998888899999999999999999999999755544332222222211111 001
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
.+.... ... ...+++.+|++.||++||++.|++++
T Consensus 254 ~~~~~~---~~~------~~~~li~~~L~~dP~~Rpt~~ell~h 288 (336)
T 3fhr_A 254 NPEWSE---VSE------DAKQLIRLLLKTDPTERLTITQFMNH 288 (336)
T ss_dssp TTTSTT---CCH------HHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred chhhcc---CCH------HHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 111100 111 12378899999999999999999974
No 278
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=343.08 Aligned_cols=250 Identities=22% Similarity=0.308 Sum_probs=182.5
Q ss_pred cCCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEEEEecc
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.+|.+.++||+|+||+||.....+|+.||||++..... ..+.+|+++++++ +|||||++++++.+. ...++||||+
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~--~~~~~E~~~l~~l~~HpnIv~l~~~~~~~-~~~~lv~E~~ 100 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF--SFADREVQLLRESDEHPNVIRYFCTEKDR-QFQYIAIELC 100 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE--EECHHHHHHHHHSCCCTTBCCEEEEEEET-TEEEEEEECC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH--HHHHHHHHHHHhccCCCCcCeEEEEEecC-CEEEEEEECC
Confidence 46889999999999997766666799999999965432 3467899999999 799999999998865 4559999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC-----CCceEEeccCccccccc
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA-----DFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~-----~~~~kl~Dfg~a~~~~~ 990 (1133)
+ |+|.+++..... ...+..+..++.||++||+|||++||+||||||+||+++. ...+||+|||+++....
T Consensus 101 ~-g~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~ 175 (432)
T 3p23_A 101 A-ATLQEYVEQKDF----AHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV 175 (432)
T ss_dssp S-EEHHHHHHSSSC----CCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred C-CCHHHHHHhcCC----CccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence 5 699999986432 2445566789999999999999999999999999999953 23578999999976543
Q ss_pred CCCCCCCCCCCCCCCCccCccccC---CCCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAAS---TGQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
............||+.|+|||++. ...++.++||||+||++|||++ |..||......... ........ ..
T Consensus 176 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~----~~~~~~~~-~~- 249 (432)
T 3p23_A 176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQAN----ILLGACSL-DC- 249 (432)
T ss_dssp ----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHH----HHTTCCCC-TT-
T ss_pred CCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHH----HHhccCCc-cc-
Confidence 322223344567999999999997 4567889999999999999999 89998644332211 11111100 00
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
..+. ... -....+++.+||+.||++||++.|+++
T Consensus 250 ------~~~~-~~~--~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 250 ------LHPE-KHE--DVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp ------SCTT-CHH--HHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ------cCcc-ccc--cHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 0011 111 112237999999999999999999994
No 279
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=330.87 Aligned_cols=244 Identities=25% Similarity=0.318 Sum_probs=187.5
Q ss_pred HHhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-------CHHHHHHHHHHHhhc----cCCCeeeEEEEE
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-------DENTFRKEAEALGKV----KHRNLTVLRGYY 901 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-------~~~~~~~E~~~l~~l----~hpniv~l~~~~ 901 (1133)
...++|++.+.||+|+||.||+|++. +++.||||++..... ....+.+|+++++++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 34668999999999999999999774 689999999965432 223456799999999 899999999999
Q ss_pred eCCCCcEEEEEec-cCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC-CCCceEE
Q 001171 902 AGPPDVRLLVYDY-MPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD-ADFEAHL 979 (1133)
Q Consensus 902 ~~~~~~~~lV~e~-~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kl 979 (1133)
...+. .++|||| +.+++|.+++.... .+++..+..++.||++||+|||+.||+||||||+||+++ .++.+||
T Consensus 108 ~~~~~-~~~v~e~~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl 181 (312)
T 2iwi_A 108 ETQEG-FMLVLERPLPAQDLFDYITEKG-----PLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKL 181 (312)
T ss_dssp ------CEEEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEE
T ss_pred ecCCe-EEEEEEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEE
Confidence 77644 4899999 78999999998743 388999999999999999999999999999999999999 8899999
Q ss_pred eccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhh
Q 001171 980 SEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQ 1058 (1133)
Q Consensus 980 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 1058 (1133)
+|||+++.... .......|+..|+|||++.+..+ +.++||||+||++|||++|+.||.... . +.. .
T Consensus 182 ~dfg~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~----~~~--~ 248 (312)
T 2iwi_A 182 IDFGSGALLHD-----EPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ--E----ILE--A 248 (312)
T ss_dssp CCCSSCEECCS-----SCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH--H----HHH--T
T ss_pred EEcchhhhccc-----CcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH--H----Hhh--h
Confidence 99999875432 12234568999999999876665 458999999999999999999995321 1 111 0
Q ss_pred hccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHh
Q 001171 1059 RGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLE 1112 (1133)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le 1112 (1133)
...+ ... ... ...+++.+||+.||++||++.|++++--
T Consensus 249 ~~~~----~~~------~~~------~~~~li~~~l~~~p~~Rps~~e~l~~~~ 286 (312)
T 2iwi_A 249 ELHF----PAH------VSP------DCCALIRRCLAPKPSSRPSLEEILLDPW 286 (312)
T ss_dssp CCCC----CTT------SCH------HHHHHHHHHTCSSTTTSCCHHHHHHSTT
T ss_pred ccCC----ccc------CCH------HHHHHHHHHccCChhhCcCHHHHhcChh
Confidence 1000 000 011 1237889999999999999999998643
No 280
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=8.2e-35 Score=330.78 Aligned_cols=256 Identities=20% Similarity=0.311 Sum_probs=173.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC--HHHHHHHHH-HHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID--ENTFRKEAE-ALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~--~~~~~~E~~-~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||||++...... ...+.+|+. +++.++||||+++++++... +..++|
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~-~~~~lv 99 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFRE-GDCWIC 99 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECS-SEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeC-CceEEE
Confidence 367899999999999999999885 6899999999754322 334555665 67778999999999999876 455999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC-CceecccCccceeeCCCCceEEeccCccccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL-DMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
|||++ |+|.+++..........+++..+..++.|++.|++|||+. ||+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 178 (327)
T 3aln_A 100 MELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVD 178 (327)
T ss_dssp ECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC---
T ss_pred EeecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceeccc
Confidence 99997 5888888754333345689999999999999999999999 999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCccCcccc----CCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAA----STGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
. .......||+.|+|||++ .+..++.++|||||||++|||++|+.||...... ...+... .........
T Consensus 179 ~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~-~~~~~~~~~ 251 (327)
T 3aln_A 179 S----IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV--FDQLTQV-VKGDPPQLS 251 (327)
T ss_dssp -------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC---------CCC-CCSCCCCCC
T ss_pred c----cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH--HHHHHHH-hcCCCCCCC
Confidence 1 122334689999999998 4566899999999999999999999999643221 1111110 001000110
Q ss_pred cCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
..... .... ...+++.+||+.||++||++.|+++
T Consensus 252 ~~~~~---~~~~------~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 252 NSEER---EFSP------SFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CCSSC---CCCH------HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred Ccccc---cCCH------HHHHHHHHHhhCChhhCcCHHHHHh
Confidence 00000 0111 1237889999999999999999975
No 281
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=4e-35 Score=331.91 Aligned_cols=241 Identities=22% Similarity=0.353 Sum_probs=192.7
Q ss_pred HhcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc-------CHHHHHHHHHHHhhcc--CCCeeeEEEEEeCC
Q 001171 835 ATRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI-------DENTFRKEAEALGKVK--HRNLTVLRGYYAGP 904 (1133)
Q Consensus 835 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~--hpniv~l~~~~~~~ 904 (1133)
..++|++.++||+|+||.||+|.+. +++.||||++..... ..+.+.+|++++++++ ||||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 4568999999999999999999764 689999999865432 2245778999999996 59999999999876
Q ss_pred CCcEEEEEeccCC-CCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeC-CCCceEEecc
Q 001171 905 PDVRLLVYDYMPN-GNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFD-ADFEAHLSEF 982 (1133)
Q Consensus 905 ~~~~~lV~e~~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kl~Df 982 (1133)
. ..++||||+.+ ++|.+++...+ .+++..+..++.||++||+|||+.||+||||||+||+++ .++.+||+||
T Consensus 121 ~-~~~lv~e~~~~~~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Df 194 (320)
T 3a99_A 121 D-SFVLILERPEPVQDLFDFITERG-----ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF 194 (320)
T ss_dssp S-EEEEEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred C-cEEEEEEcCCCCccHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeC
Confidence 4 45899999976 89999998743 388999999999999999999999999999999999999 7899999999
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCccccCCCCC-CCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcc
Q 001171 983 GLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQP-TKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQ 1061 (1133)
Q Consensus 983 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~ 1061 (1133)
|+++.... .......||+.|+|||++.+..+ +.++|||||||++|||++|+.||.... . +.. ..
T Consensus 195 g~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~----~~~----~~ 259 (320)
T 3a99_A 195 GSGALLKD-----TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE--E----IIR----GQ 259 (320)
T ss_dssp TTCEECCS-----SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH--H----HHH----CC
T ss_pred cccccccc-----ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh--h----hhc----cc
Confidence 99875432 12234568999999999876665 688999999999999999999995321 1 111 10
Q ss_pred ccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1062 ISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
. ...... .. ...+++.+||+.||++||+++|++++
T Consensus 260 ~--~~~~~~------~~------~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 260 V--FFRQRV------SS------ECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp C--CCSSCC------CH------HHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred c--cccccC------CH------HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0 011110 11 12378899999999999999999974
No 282
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=8.8e-35 Score=342.84 Aligned_cols=255 Identities=20% Similarity=0.279 Sum_probs=181.8
Q ss_pred CCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEEEEeccC
Q 001171 838 QFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLLVYDYMP 916 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~lV~e~~~ 916 (1133)
.|...++||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +||||+++++++... ...++||||++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~-~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF--CDIALMEIKLLTESDDHPNVIRYYCSETTD-RFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHTTSTTBCCEEEEEECS-SEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH--HHHHHHHHHHHHhccCCCCcCeEEEEEecC-CeEEEEEecCC
Confidence 455678899999999988777789999999986532 45678999999987 899999999998775 45699999995
Q ss_pred CCCHHHHHHhhccCCCC--CCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC-------------CceEEec
Q 001171 917 NGNLATLLQEASHQDGH--VLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD-------------FEAHLSE 981 (1133)
Q Consensus 917 ~gsL~~~l~~~~~~~~~--~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~-------------~~~kl~D 981 (1133)
|+|.+++......... ..++..++.++.||+.||+|||++||+||||||+||+++.+ +.+||+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~D 171 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISD 171 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECC
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcc
Confidence 6999999875432111 12344567899999999999999999999999999999754 4899999
Q ss_pred cCcccccccCCCCC-CCCCCCCCCCCccCccccCC-------CCCCCCCchhHHHHHHHHHHh-CCCCCccCChhhHHHH
Q 001171 982 FGLDRLAIATPAEA-SSSTTPIGSLGYVSPEAAST-------GQPTKEADVYSFGIVLLEILT-GRKPVMFTQDEDIVKW 1052 (1133)
Q Consensus 982 fg~a~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlG~il~el~t-g~~Pf~~~~~~~~~~~ 1052 (1133)
||+++......... .......||+.|+|||++.+ ..++.++||||+||++|||++ |+.||....... ..
T Consensus 172 FG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~ 249 (434)
T 2rio_A 172 FGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE--SN 249 (434)
T ss_dssp CTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH--HH
T ss_pred cccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH--HH
Confidence 99997654322111 12234579999999999965 568999999999999999999 999996543322 11
Q ss_pred HHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1053 VKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
+.+.. ..... ... ...... .....+++.+||+.||.+||++.|+++
T Consensus 250 i~~~~--~~~~~-----~~~--~~~~~~--~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 250 IIRGI--FSLDE-----MKC--LHDRSL--IAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHTC--CCCCC-----CTT--CCCHHH--HHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HhcCC--CCccc-----ccc--cccccc--hHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 11110 00000 000 011111 122338999999999999999999986
No 283
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.5e-33 Score=319.33 Aligned_cols=307 Identities=22% Similarity=0.368 Sum_probs=181.0
Q ss_pred hhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCc
Q 001171 335 LTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLK 414 (1133)
Q Consensus 335 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 414 (1133)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|+|++|.++.. ..+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4455566666666666552 22 25555555555555555554322 55555555555555555431 1344444444
Q ss_pred EEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCC
Q 001171 415 IVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASG 494 (1133)
Q Consensus 415 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 494 (1133)
+|++++|.+++..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~---------------------- 168 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK---------------------- 168 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC----------------------
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC----------------------
Confidence 44444444443222 444444444444444332221 22444444444444444443
Q ss_pred CccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcc
Q 001171 495 FSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPAT 574 (1133)
Q Consensus 495 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 574 (1133)
+..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+
T Consensus 169 --~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 169 --DVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp --CCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred --Cchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 2222 44455555555555555432 21 5555556666666665554333 5566666666666666664333
Q ss_pred cccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCc
Q 001171 575 YGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLV 654 (1133)
Q Consensus 575 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 654 (1133)
+..+++|++|++++|++++. ..+..+++|++|++++|++++ + ..+..+++|+.|+|++|.+++..|..++.+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 66677777777777777643 356777888888888888875 3 3477788888888888888877788888888888
Q ss_pred EEEeecCCCCccCCccccCccccccccccccccc
Q 001171 655 SLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLS 688 (1133)
Q Consensus 655 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 688 (1133)
.|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888887655 778888888888888875
No 284
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.3e-34 Score=325.88 Aligned_cols=270 Identities=18% Similarity=0.225 Sum_probs=242.4
Q ss_pred ccCchhHHHHHHHHHHhC-CCCCCCccCCC--CCCCCCCCccceeeeCC----------CceEEEeeCCcccCcccchhh
Q 001171 25 NAVVLSEIQALTSFKLHL-KDPLGALDGWD--SSTPSAPCDWRGIVCYN----------NRVRELRLPRLQLAGRLTDQL 91 (1133)
Q Consensus 25 ~~~~~~~~~~l~~~k~~~-~~~~~~l~~w~--~~~~~~~c~w~gv~c~~----------~~v~~l~l~~~~l~g~~~~~l 91 (1133)
.++..+|++||++||+++ .||.+.+.+|. .....++|.|.||+|+. .+|+.|+|.++++. .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 456778999999999999 68878889993 11234789999999952 68999999999998 889999
Q ss_pred cccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCcc--------
Q 001171 92 ADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADI-------- 163 (1133)
Q Consensus 92 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~-------- 163 (1133)
+++++|++|+|++|+++ .+|..++.+++|+.|+|++|+++ .+|..++++++|++|++++|.+.+.+|..+
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 99999999999999999 89999999999999999999999 899999999999999999999999898876
Q ss_pred ---CCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccc
Q 001171 164 ---SPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLV 240 (1133)
Q Consensus 164 ---~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 240 (1133)
.++|++|+|++|.++ .+|..|+.+++|++|+|++|++++ +|..++.+++|++|+|++|++.+.+|..+.++++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 689999999999998 788889999999999999999995 677799999999999999999999999999999999
Q ss_pred eeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccc
Q 001171 241 HLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTG 304 (1133)
Q Consensus 241 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~ 304 (1133)
+|++++|++.+.+|..+..+++|++|+|++|++.+.+|..+ +++++|+.+++..+.+..
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-----~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-----AQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-----GGSCTTCEEECCGGGSCC
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-----hhccCceEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999877 888999998888776654
No 285
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-33 Score=317.91 Aligned_cols=304 Identities=22% Similarity=0.375 Sum_probs=194.1
Q ss_pred ccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEE
Q 001171 313 CVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMF 392 (1133)
Q Consensus 313 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 392 (1133)
.+.+|++|++++|.+..+ + .+..+++|++|++++|++++..+ +..+++|++|++++|.++.. +.+.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 345567777777777766 2 37778888888888888875433 78888888888888888764 357888888888
Q ss_pred EccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCC
Q 001171 393 DLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFG 472 (1133)
Q Consensus 393 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 472 (1133)
++++|++++..+ +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 888888875443 7788888888888886554433 47888889999999988875433 778888888888888887
Q ss_pred CCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCC
Q 001171 473 GKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFS 552 (1133)
Q Consensus 473 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 552 (1133)
+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+.
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence 5433 6667777777777777665443 5666667777777776664322 55566666666666655532 2344
Q ss_pred CCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCee
Q 001171 553 SLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKL 632 (1133)
Q Consensus 553 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 632 (1133)
.+++|++|++++|++++. ..+..+++|++|++++|++++..|..++.+++|++|++++|++++..| +..+++|++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 555555555555555432 234444444444554444444444444444444444444444443222 4444444444
Q ss_pred ecCCCcc
Q 001171 633 DLGQNKL 639 (1133)
Q Consensus 633 ~Ls~N~l 639 (1133)
++++|.|
T Consensus 339 ~l~~N~i 345 (347)
T 4fmz_A 339 DFANQVI 345 (347)
T ss_dssp SSSCC--
T ss_pred ehhhhcc
Confidence 4444444
No 286
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=321.97 Aligned_cols=249 Identities=18% Similarity=0.289 Sum_probs=175.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcCH---HHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDE---NTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~---~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~lV 911 (1133)
.++|++.+.||+|+||.||+|.++ +|+.||||++....... +.+.++..+++.++||||+++++++... ...++|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-~~~~lv 102 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITN-TDVFIA 102 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecC-CcEEEE
Confidence 457999999999999999999885 68999999997543322 2344455678888999999999999876 455999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC-CceecccCccceeeCCCCceEEeccCccccccc
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL-DMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
|||+ ++.+..+..... ..+++..+..++.||++||+|||++ ||+||||||+||+++.++.+||+|||+++....
T Consensus 103 ~e~~-~~~~~~l~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~ 177 (318)
T 2dyl_A 103 MELM-GTCAEKLKKRMQ----GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD 177 (318)
T ss_dssp ECCC-SEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred Eecc-CCcHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence 9999 566666655432 3488999999999999999999995 999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCccCccccC-----CCCCCCCCchhHHHHHHHHHHhCCCCCccCC-hhhHHHHHHHHhhhccccc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAAS-----TGQPTKEADVYSFGIVLLEILTGRKPVMFTQ-DEDIVKWVKKQLQRGQISE 1064 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~-~~~~~~~~~~~~~~~~~~~ 1064 (1133)
. .......|++.|+|||++. +..++.++||||+||++|||++|+.||.... ..+....+.. . ....
T Consensus 178 ~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~---~-~~~~ 249 (318)
T 2dyl_A 178 D----KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQ---E-EPPL 249 (318)
T ss_dssp -------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHH---S-CCCC
T ss_pred C----ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhc---c-CCCC
Confidence 1 1223456899999999984 4568899999999999999999999997532 2222222222 1 1111
Q ss_pred cccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHH
Q 001171 1065 LLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVF 1109 (1133)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~ 1109 (1133)
... . ..... ...+++.+||+.||.+||++.|+++
T Consensus 250 ~~~--~---~~~~~------~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 250 LPG--H---MGFSG------DFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCS--S---SCCCH------HHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCc--c---CCCCH------HHHHHHHHHccCChhHCcCHHHHhh
Confidence 100 0 00111 1226888999999999999999986
No 287
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=2.1e-34 Score=319.62 Aligned_cols=235 Identities=11% Similarity=0.014 Sum_probs=177.5
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCcC----HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTID----ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
.++|++.+.||+|+||.||+|.+. +|+.||||++...... .+.+.+|++++++++||||+++++++... +..|+
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-~~~~l 108 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR-AGGLV 108 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC-CcEEE
Confidence 357999999999999999999886 4899999999765433 26789999999999999999999999876 45699
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.++++.. .....+..++.||+.||+|||++||+||||||+||+++.++.+||+++|
T Consensus 109 v~e~~~g~~L~~~l~~~-------~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~------- 174 (286)
T 3uqc_A 109 VAEWIRGGSLQEVADTS-------PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA------- 174 (286)
T ss_dssp EEECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC-------
T ss_pred EEEecCCCCHHHHHhcC-------CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc-------
Confidence 99999999999998531 3445678899999999999999999999999999999999999997543
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCc
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGL 1070 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1133)
|++| ++.++|||||||++|||++|+.||......+......+. ......+ .
T Consensus 175 ----------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~-----~~~~~~~-~ 225 (286)
T 3uqc_A 175 ----------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERD-----TAGQPIE-P 225 (286)
T ss_dssp ----------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBC-----TTSCBCC-H
T ss_pred ----------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHH-----hccCCCC-h
Confidence 3332 578999999999999999999999754432100000000 0000000 0
Q ss_pred CCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHHHHHhcCcCCCCC
Q 001171 1071 LELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIVFMLEGCRVGPDM 1120 (1133)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl~~Le~~~~~~~~ 1120 (1133)
....... .. ...+++.+||+.||++| |+.|+++.|+.+......
T Consensus 226 ~~~~~~~---~~--~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~~ 269 (286)
T 3uqc_A 226 ADIDRDI---PF--QISAVAARSVQGDGGIR-SASTLLNLMQQATAVADR 269 (286)
T ss_dssp HHHCTTS---CH--HHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC----
T ss_pred hhcccCC---CH--HHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCCc
Confidence 0000000 00 12378999999999999 999999999997766553
No 288
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=6.7e-34 Score=342.96 Aligned_cols=261 Identities=20% Similarity=0.292 Sum_probs=190.1
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeC-----CCCc
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAG-----PPDV 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~-----~~~~ 907 (1133)
.++|++.++||+|+||.||+|.+. +|+.||||++..... ..+.+.+|++++++++||||+++++++.. ....
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 468999999999999999999774 689999999865422 24578899999999999999999998754 2345
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCc---eEEeccCc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFE---AHLSEFGL 984 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~---~kl~Dfg~ 984 (1133)
.++||||+++|+|.+++..... ...+++..+..++.|++.||+|||+.||+||||||+||+++.++. +||+|||+
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~--~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~ 170 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFEN--CCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGY 170 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSC--TTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCC
T ss_pred EEEEEEeCCCCCHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEccccc
Confidence 5899999999999999986432 234888999999999999999999999999999999999997765 89999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhc----
Q 001171 985 DRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRG---- 1060 (1133)
Q Consensus 985 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~---- 1060 (1133)
++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .|........
T Consensus 171 a~~~~~~----~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~--~~~~~i~~~~~~~~ 244 (676)
T 3qa8_A 171 AKELDQG----ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPV--QWHGKVREKSNEHI 244 (676)
T ss_dssp CCBTTSC----CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHH--HSSTTCC------C
T ss_pred ccccccc----cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchh--hhhhhhhcccchhh
Confidence 9754322 22344679999999999999999999999999999999999999996533221 1111000000
Q ss_pred cccccccC------CcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHH
Q 001171 1061 QISELLEP------GLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMAD 1106 (1133)
Q Consensus 1061 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~e 1106 (1133)
...+.... .............. ...+++.+|+..||++||++.|
T Consensus 245 ~~~~~l~g~~~~~~~lp~p~~l~~~ls~--~L~dLI~~mL~~DP~kRPTa~e 294 (676)
T 3qa8_A 245 VVYDDLTGAVKFSSVLPTPNHLSGILAG--KLERWLQCMLMWHQRQRGTDPQ 294 (676)
T ss_dssp CSCCCCSSSCCCCSSSCCSCCCCGGGHH--HHHHHHHHHSCSSCC---CCTT
T ss_pred hhhhhhccccccccccCCchhhchhhhH--HHHHHHHHHccCCHhhCcCHHH
Confidence 00000000 00000001111111 1237999999999999999977
No 289
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.3e-32 Score=307.25 Aligned_cols=295 Identities=22% Similarity=0.272 Sum_probs=193.1
Q ss_pred chhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccc
Q 001171 144 NLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSN 223 (1133)
Q Consensus 144 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N 223 (1133)
+|++++++++.++ .+|..+++++++|+|++|.+++..+..|.++++|++|+|++|++++..|..++.+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCcc-ccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 3444445554444 456667788999999999999888888999999999999999999888999999999999999999
Q ss_pred cccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccC--CcccccccCcccccccccEEeccCCc
Q 001171 224 HLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTG--LVPVSVLCNLWGNISSLRIVQLGFNA 301 (1133)
Q Consensus 224 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~l~~L~~l~l~~n~ 301 (1133)
+++ .+|..+. ++|++|++++|+++++.+..|.++++|++|++++|+++. ..+.. +.++++|+.|++++|.
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----FQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----GGGCTTCCEEECCSSC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-----ccCCCCcCEEECCCCc
Confidence 997 6776654 789999999999998888888999999999999999863 33332 3667777777777777
Q ss_pred ccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCch
Q 001171 302 FTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPD 381 (1133)
Q Consensus 302 l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 381 (1133)
++.... . ....|++|++++|+|+++.|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++ .+|.
T Consensus 183 l~~l~~--~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 183 ITTIPQ--G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CCSCCS--S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred cccCCc--c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 765321 1 1144555555555555555555555555555555555555444444555555555555555554 2344
Q ss_pred hhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccc--cCChhhcCCC
Q 001171 382 EIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRG--NIPEEITRLS 459 (1133)
Q Consensus 382 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~--~~~~~l~~l~ 459 (1133)
.+..+++|++|+|++|+|++..+..|.... .......|+.|++++|.+.. ..|..|..+.
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCcccccccc
Confidence 444455555555555555444333332210 00112556666777776643 4455666677
Q ss_pred CCcEEecccCc
Q 001171 460 NLTTLNLSYNK 470 (1133)
Q Consensus 460 ~L~~L~Ls~N~ 470 (1133)
+++.++|++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 77777777664
No 290
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9e-32 Score=306.17 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=63.2
Q ss_pred cccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEE
Q 001171 314 VSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFD 393 (1133)
Q Consensus 314 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (1133)
...++.++++++.++.++.. + .++|++|+|++|.|.+..|..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EEETTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cccCCEEECCCCCccccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 34566666666666655322 2 24555566666655555455555555555555555555555555555555555555
Q ss_pred ccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccc
Q 001171 394 LEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDI 447 (1133)
Q Consensus 394 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i 447 (1133)
|++|+++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 55555542 222221 3444444444444433333344444444444444433
No 291
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-33 Score=313.98 Aligned_cols=248 Identities=27% Similarity=0.459 Sum_probs=144.7
Q ss_pred ccceeecccccccc--cCChhhcCCCCCcEEeccc-CcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEE
Q 001171 436 QLETLNLSENDIRG--NIPEEITRLSNLTTLNLSY-NKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTL 512 (1133)
Q Consensus 436 ~L~~L~L~~N~i~~--~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 512 (1133)
+++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+.+|.. |+++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~------------------------l~~l~~L~~L 106 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA------------------------IAKLTQLHYL 106 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG------------------------GGGCTTCSEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh------------------------HhcCCCCCEE
Confidence 45555555555554 4455555555555555552 4444444444 4444444444
Q ss_pred eccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCccccccc-ccceeecccCcc
Q 001171 513 DLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLR-SLVFLSLSHNQI 591 (1133)
Q Consensus 513 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 591 (1133)
++++|++++.+|..+.++++|++|++++|.+++.+|..|..+++|++|+|++|++++.+|..++.++ +|++|++++|++
T Consensus 107 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 4444444444444444444455555555555444455555555555555555555555555555554 555555555555
Q ss_pred CCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccc
Q 001171 592 SGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESF 671 (1133)
Q Consensus 592 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 671 (1133)
++.+|..++.++ |++|++++|++++..|..+..+++|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..|
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 555555555554 66666666666665666666666666666666666644443 5666777777777777776777777
Q ss_pred cCcccccccccccccccccCCccccccccCccccccccc
Q 001171 672 SKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNN 710 (1133)
Q Consensus 672 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 710 (1133)
..+++|+.|+|++|+++|.+|.. ..+++|+.|++++|+
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 77777777777777777777665 667777777766665
No 292
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.3e-31 Score=304.81 Aligned_cols=250 Identities=29% Similarity=0.364 Sum_probs=157.0
Q ss_pred ccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEE
Q 001171 290 SSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLR 369 (1133)
Q Consensus 290 ~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 369 (1133)
.+++.++++++.++.... . ..+.+++|++++|+|+++.|..|.++++|++|+|++|+|++..|..|+++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~--~--~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK--E--ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCS--C--CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCC--C--CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 467777777777765321 1 135677777777777777777777777777777777777777677777777777777
Q ss_pred ccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCcc--ccCccccCccccceeecccccc
Q 001171 370 VANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSG--LIPLSFGNLSQLETLNLSENDI 447 (1133)
Q Consensus 370 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~i 447 (1133)
|++|+++.. |..+. ++|++|++++|++++..+..|.++++|+.|++++|.++. ..+..|..+ +|++|++++|++
T Consensus 109 L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 777777743 33333 677777777777776666667777777777777777753 556666666 677777777776
Q ss_pred cccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhc
Q 001171 448 RGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIEL 527 (1133)
Q Consensus 448 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 527 (1133)
++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 64 333332 45666666666665555555555555555555555555544444555555555555555554 444444
Q ss_pred cCCCCCcEeeccCCcccccCCCCC
Q 001171 528 FGLPSLQVVSLEENNLSGDVPEGF 551 (1133)
Q Consensus 528 ~~l~~L~~L~L~~N~l~~~~~~~~ 551 (1133)
..+++|++|++++|++++..+..|
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSS
T ss_pred hcCccCCEEECCCCCCCccChhHc
Confidence 444444444444444444333333
No 293
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=8e-36 Score=356.49 Aligned_cols=356 Identities=19% Similarity=0.176 Sum_probs=221.4
Q ss_pred ccccEEeccCCcccccCCch-hhcccccceeeccCceeec----ccCcccCCCCCCcEEEccCCcccccCchhhc-cCC-
Q 001171 315 SVLEVLDLQNNRIRAVFPSW-LTNVTSLRVMDLSGNFFSG----NLPAAVGSLDKLEVLRVANNSLSGLVPDEIA-KCS- 387 (1133)
Q Consensus 315 ~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~- 387 (1133)
..|++|+|++|+++...... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.++...+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46888999999887654333 7788889999999998874 3466777788888888888888765444333 344
Q ss_pred ---CccEEEccCCcccc----cCCCccCCCCCCcEEEccCCcCccccCcccc-----CccccceeecccccccccC----
Q 001171 388 ---LLQMFDLEGNRFSG----QVPAFLGGIRGLKIVSLGRNMFSGLIPLSFG-----NLSQLETLNLSENDIRGNI---- 451 (1133)
Q Consensus 388 ---~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~i~~~~---- 451 (1133)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+. ..++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 58888888888763 4466677777777777777777654333222 2345666666666666532
Q ss_pred ChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCc-CCcccccEEeccccCCCCC----CChh
Q 001171 452 PEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSI-GSLMRLTTLDLSNQNLSGE----LPIE 526 (1133)
Q Consensus 452 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~----~p~~ 526 (1133)
+..+..+++|++|++++|.+++..+..+.. .+ ...++|++|++++|.+++. ++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 334444556666666665554322211111 00 0133556666666655542 3445
Q ss_pred ccCCCCCcEeeccCCcccccC-----CCCCCCCccCcEEEcccccccCC----CCcccccccccceeecccCccCCCCCc
Q 001171 527 LFGLPSLQVVSLEENNLSGDV-----PEGFSSLVGLQYLNLSDNAFTGD----IPATYGFLRSLVFLSLSHNQISGMIPA 597 (1133)
Q Consensus 527 l~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 597 (1133)
+..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 555666666666666655422 22233456677777777766643 455555667777777777776644433
Q ss_pred cccC-----CCCccEEEecCCcccCC----CccccccccccCeeecCCCcccCcCchhhhc-----cCCCcEEEeecCCC
Q 001171 598 ELGA-----CSALEVLELRSNHFTGN----IPVDISHLSRIKKLDLGQNKLSGEIPKEISK-----CSSLVSLTLDMNSL 663 (1133)
Q Consensus 598 ~l~~-----l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l 663 (1133)
.+.. .++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 3322 25777777777777654 3445556677777777777777655555543 56777777777777
Q ss_pred Cc----cCCccccCccccccccccccccccc
Q 001171 664 SG----RIPESFSKLSNLTTLNLSTNRLSGA 690 (1133)
Q Consensus 664 ~~----~~~~~~~~l~~L~~L~Ls~N~l~~~ 690 (1133)
++ .+|..+..+++|++|+|++|++++.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 75 5666667777777777777777654
No 294
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.9e-31 Score=303.25 Aligned_cols=292 Identities=19% Similarity=0.240 Sum_probs=155.5
Q ss_pred ccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEE
Q 001171 313 CVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMF 392 (1133)
Q Consensus 313 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 392 (1133)
|...++.++++++.++.++ ..+ .++|++|+|++|+|++..+..|+++++|++|+|++|++++..|..|.++++|++|
T Consensus 29 c~c~l~~l~~~~~~l~~lp-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp CEEETTEEECTTSCCCSCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CcCCCeEEEecCCCccccC-ccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 4445666666666666653 222 2466667777777766555566666777777777776666666666666666777
Q ss_pred EccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccc--cCChhhcCCCCCcEEecccCc
Q 001171 393 DLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRG--NIPEEITRLSNLTTLNLSYNK 470 (1133)
Q Consensus 393 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~--~~~~~l~~l~~L~~L~Ls~N~ 470 (1133)
+|++|+++. +|..+. ++|+.|++++|.+++..+..|.++++|++|++++|.++. ..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 766666663 333322 456666666666665555555666666666666666542 444555555666666666655
Q ss_pred CCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCC
Q 001171 471 FGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEG 550 (1133)
Q Consensus 471 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 550 (1133)
++. +|..+. ++|++|++++|.+++..|..|..+++|++|++++|.++ +..+..
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------~~~~~~ 235 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS------------------------AVDNGS 235 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC------------------------EECTTT
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc------------------------eeChhh
Confidence 552 232221 34444444444444444444444444444444444444 433344
Q ss_pred CCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccC------CCCccEEEecCCcccC--CCccc
Q 001171 551 FSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGA------CSALEVLELRSNHFTG--NIPVD 622 (1133)
Q Consensus 551 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~--~~p~~ 622 (1133)
|..+++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..|.. ...|+.|++++|.+.. ..|..
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 444444444444444444 33444444444444444444444333333321 2456666666666642 34455
Q ss_pred cccccccCeeecCCCc
Q 001171 623 ISHLSRIKKLDLGQNK 638 (1133)
Q Consensus 623 l~~l~~L~~L~Ls~N~ 638 (1133)
+..+.+++.++|++|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 6666666666666664
No 295
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=2e-35 Score=353.05 Aligned_cols=359 Identities=18% Similarity=0.141 Sum_probs=245.1
Q ss_pred cccccEEeccCCcccccccCCCCCccccccEEeccCCccccc----CCchhhcccccceeeccCceeecccCccc-CCCC
Q 001171 289 ISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAV----FPSWLTNVTSLRVMDLSGNFFSGNLPAAV-GSLD 363 (1133)
Q Consensus 289 l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~ 363 (1133)
+++|+.|++++|.++.......+..+++|++|+|++|+++.. .+..+..+++|++|||++|.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999998654222245677899999999999853 25678888999999999999986544433 3455
Q ss_pred ----CCcEEEccCCcccc----cCchhhccCCCccEEEccCCcccccCCCccC-----CCCCCcEEEccCCcCcccc---
Q 001171 364 ----KLEVLRVANNSLSG----LVPDEIAKCSLLQMFDLEGNRFSGQVPAFLG-----GIRGLKIVSLGRNMFSGLI--- 427 (1133)
Q Consensus 364 ----~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~--- 427 (1133)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+. ..++|++|+|++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999984 4588899999999999999999765444332 3568999999999999743
Q ss_pred -CccccCccccceeecccccccccCChhhc-----CCCCCcEEecccCcCCCC----CCCCCCCCCCCcEEEcccCCCcc
Q 001171 428 -PLSFGNLSQLETLNLSENDIRGNIPEEIT-----RLSNLTTLNLSYNKFGGK----VPYDVGNLKGLLVLNLSASGFSG 497 (1133)
Q Consensus 428 -p~~~~~l~~L~~L~L~~N~i~~~~~~~l~-----~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 497 (1133)
+..+..+++|++|++++|.++...+..+. ..++|++|+|++|.+++. ++..+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 56677789999999999999876555554 366899999999988753 34455566777777777777654
Q ss_pred cc-----CCCcCCcccccEEeccccCCCCC----CChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEccccccc
Q 001171 498 KI-----PGSIGSLMRLTTLDLSNQNLSGE----LPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFT 568 (1133)
Q Consensus 498 ~~-----~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 568 (1133)
.. +..+..+++|++|++++|+++.. ++..+..+++|++|++++|.+++..+..+...
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------- 307 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET-------------- 307 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH--------------
Confidence 32 12222455666666666665532 34444445555555555555443222111110
Q ss_pred CCCCcccccccccceeecccCccCCC----CCccccCCCCccEEEecCCcccCCCcccccc-----ccccCeeecCCCcc
Q 001171 569 GDIPATYGFLRSLVFLSLSHNQISGM----IPAELGACSALEVLELRSNHFTGNIPVDISH-----LSRIKKLDLGQNKL 639 (1133)
Q Consensus 569 ~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l 639 (1133)
.....++|++|+|++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|+|++|.+
T Consensus 308 -----l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 308 -----LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp -----HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred -----hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 000114566666666665543 3444555667777777777766544443332 45777777777777
Q ss_pred cC----cCchhhhccCCCcEEEeecCCCCcc
Q 001171 640 SG----EIPKEISKCSSLVSLTLDMNSLSGR 666 (1133)
Q Consensus 640 ~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ 666 (1133)
++ .+|..+..+++|++|++++|++++.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 75 5677777778888888888877754
No 296
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.98 E-value=1.1e-32 Score=343.80 Aligned_cols=239 Identities=20% Similarity=0.288 Sum_probs=186.5
Q ss_pred hcCCCcccccccccceeEEEEEEC--CceEEEEEEcccCCc--CHHHHHHHHHHHhhccCCCeeeEEEEEeCCCCc----
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ--DGMVLSIRRLRDGTI--DENTFRKEAEALGKVKHRNLTVLRGYYAGPPDV---- 907 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~--~g~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~---- 907 (1133)
.++|++.++||+|+||.||+|.+. +|+.||||++..... ....+.+|++++++++||||+++++++......
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 368999999999999999999875 589999999865332 235688999999999999999999999764331
Q ss_pred EEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCcccc
Q 001171 908 RLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 908 ~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.|+||||+++++|.+++.. .+++..+..++.||++||+|||++||+||||||+||+++.+ .+||+|||+++.
T Consensus 159 ~~lv~E~~~g~~L~~~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~ 230 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ-------KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSR 230 (681)
T ss_dssp EEEEEECCCCEECC----C-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred eEEEEEeCCCCcHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchh
Confidence 5899999999999887653 38999999999999999999999999999999999999885 899999999875
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhcccccccc
Q 001171 988 AIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLE 1067 (1133)
Q Consensus 988 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1133)
... .....||+.|+|||++.+. ++.++|||||||++|||++|..||.......
T Consensus 231 ~~~-------~~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~------------------- 283 (681)
T 2pzi_A 231 INS-------FGYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG------------------- 283 (681)
T ss_dssp TTC-------CSCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS-------------------
T ss_pred ccc-------CCccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc-------------------
Confidence 422 1345799999999998654 4889999999999999999998875311100
Q ss_pred CCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCC-HHHHHHHHhcC
Q 001171 1068 PGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPS-MADIVFMLEGC 1114 (1133)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs-~~evl~~Le~~ 1114 (1133)
. ..............+++.+||+.||++||+ ++++.+.|.++
T Consensus 284 --~---~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 326 (681)
T 2pzi_A 284 --L---PEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV 326 (681)
T ss_dssp --C---CTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred --c---cccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence 0 001111111112237899999999999995 55566655543
No 297
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.98 E-value=9.9e-33 Score=309.20 Aligned_cols=232 Identities=19% Similarity=0.330 Sum_probs=174.6
Q ss_pred hcCCCcc-cccccccceeEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHH-hhccCCCeeeEEEEEeC---CCCcEE
Q 001171 836 TRQFDEE-NVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEAL-GKVKHRNLTVLRGYYAG---PPDVRL 909 (1133)
Q Consensus 836 ~~~~~~~-~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l-~~l~hpniv~l~~~~~~---~~~~~~ 909 (1133)
.++|.+. ++||+|+||.||+|.+. +++.||+|++.. ...+.+|++++ +..+||||+++++++.. .....+
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 3467776 78999999999999874 689999999864 35678899998 55599999999998864 234568
Q ss_pred EEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC---CCceEEeccCccc
Q 001171 910 LVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA---DFEAHLSEFGLDR 986 (1133)
Q Consensus 910 lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~---~~~~kl~Dfg~a~ 986 (1133)
+||||+++|+|.+++..... ..+++..+..++.||+.||+|||++||+||||||+||+++. ++.+||+|||+++
T Consensus 92 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~ 168 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168 (299)
T ss_dssp EEECCCCSCBHHHHHHHCTT---CCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEeecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccc
Confidence 99999999999999987432 34899999999999999999999999999999999999998 7889999999875
Q ss_pred ccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCCCccCChhhHHHHHHHHhhhccccccc
Q 001171 987 LAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELL 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1133)
... +..++.++||||+||++|||++|+.||............ ...+
T Consensus 169 ~~~-------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~---------~~~~ 214 (299)
T 3m2w_A 169 ETT-------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGM---------KTRI 214 (299)
T ss_dssp ECT-------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCS---------CCSS
T ss_pred ccc-------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHH---------HHHH
Confidence 321 234577899999999999999999999654332211100 0000
Q ss_pred cCCcCCCCCCChhHHHHH-HhHhhhhccCCCCCCCCCCHHHHHHH
Q 001171 1067 EPGLLELDPESSEWEEFL-LGVKVGLLCTAPDPLDRPSMADIVFM 1110 (1133)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~-~~~~li~~Cl~~dP~~RPs~~evl~~ 1110 (1133)
....... ....+..+. ...+++.+||+.||++||++.|++++
T Consensus 215 ~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 215 RMGQYEF--PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp CTTCCSS--CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhccccC--CchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 0000000 000001111 12378999999999999999999974
No 298
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.97 E-value=1.4e-32 Score=321.85 Aligned_cols=243 Identities=18% Similarity=0.140 Sum_probs=175.9
Q ss_pred hcCCCcccccccccceeEEEEEEC-CceEEEEEEcccCC----cCHHHHHHHHHHHhhccC-CCe---------e-----
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT----IDENTFRKEAEALGKVKH-RNL---------T----- 895 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~E~~~l~~l~h-pni---------v----- 895 (1133)
..+|...++||+|+||+||+|.+. +|+.||||++.... ...+.+.+|+.+++.++| +|. +
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 345778899999999999999864 69999999987322 224679999999999987 221 1
Q ss_pred -e------EEEEEeCC----CCcEEEEEeccCCCCHHHHHHhhc--cCCCCCCChHHHHHHHHHHHHHHHHHhcCCceec
Q 001171 896 -V------LRGYYAGP----PDVRLLVYDYMPNGNLATLLQEAS--HQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHG 962 (1133)
Q Consensus 896 -~------l~~~~~~~----~~~~~lV~e~~~~gsL~~~l~~~~--~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~ 962 (1133)
. +..++... ....+++|+++ +++|.++++... ......+++..+..++.||++||+|||++||+||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHr 235 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT 235 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 1 11111111 12236677765 789999986432 1122347788999999999999999999999999
Q ss_pred ccCccceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCcccc----------CCCCCCCCCchhHHHHHHH
Q 001171 963 DIKPQNVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAA----------STGQPTKEADVYSFGIVLL 1032 (1133)
Q Consensus 963 Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DvwSlG~il~ 1032 (1133)
||||+|||++.++.+||+|||+++.... ......| +.|+|||++ .+..++.++|||||||++|
T Consensus 236 DiKp~NILl~~~~~~kL~DFG~a~~~~~------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ 308 (413)
T 3dzo_A 236 YLRPVDIVLDQRGGVFLTGFEHLVRDGA------SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIY 308 (413)
T ss_dssp CCCGGGEEECTTCCEEECCGGGCEETTE------EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHH
T ss_pred CcccceEEEecCCeEEEEeccceeecCC------ccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHH
Confidence 9999999999999999999999865322 1334567 999999999 5556888999999999999
Q ss_pred HHHhCCCCCccCChhhHHHHHHHHhhhccccccccCCcCCCCCCChhHHHHHHhHhhhhccCCCCCCCCCCHHHHH
Q 001171 1033 EILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMADIV 1108 (1133)
Q Consensus 1033 el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~Cl~~dP~~RPs~~evl 1108 (1133)
||++|+.||.......... ..+. ..... . ....+++.+||+.||++||++.|++
T Consensus 309 elltg~~Pf~~~~~~~~~~------------~~~~-~~~~~---~------~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 309 WIWCADLPNTDDAALGGSE------------WIFR-SCKNI---P------QPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHSSCCCCTTGGGSCSG------------GGGS-SCCCC---C------HHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHCCCCCCCcchhhhHH------------HHHh-hcccC---C------HHHHHHHHHHccCChhhCcCHHHHH
Confidence 9999999996544322111 1111 11111 1 1123788999999999999976664
No 299
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.97 E-value=6.4e-32 Score=308.05 Aligned_cols=240 Identities=12% Similarity=0.112 Sum_probs=180.5
Q ss_pred hcCCCcccccccccceeEEEEEECCceEEEEEEcccCCc---------CHHHHHHHHHHHhhcc---------CCCeeeE
Q 001171 836 TRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI---------DENTFRKEAEALGKVK---------HRNLTVL 897 (1133)
Q Consensus 836 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~---------hpniv~l 897 (1133)
.++|++.+.||+|+||+||+|++ +|+.||||++..... ..+.+.+|++++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 45789999999999999999988 689999999975432 2377899999999986 8888888
Q ss_pred EEEEe-----------------C------------CCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHH
Q 001171 898 RGYYA-----------------G------------PPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLA 948 (1133)
Q Consensus 898 ~~~~~-----------------~------------~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia 948 (1133)
.+.+. . .....++||||+++|++.+.+.+ ..+++..+..++.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~------~~~~~~~~~~i~~qi~ 171 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT------KLSSLATAKSILHQLT 171 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT------TCCCHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh------cCCCHHHHHHHHHHHH
Confidence 77642 1 14566999999999976666543 2378999999999999
Q ss_pred HHHHHHh-cCCceecccCccceeeCCCC--------------------ceEEeccCcccccccCCCCCCCCCCCCCCCCc
Q 001171 949 RGLSFLH-SLDMVHGDIKPQNVLFDADF--------------------EAHLSEFGLDRLAIATPAEASSSTTPIGSLGY 1007 (1133)
Q Consensus 949 ~~L~~LH-~~~ivH~Dlkp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y 1007 (1133)
.||+||| ++||+||||||+|||++.++ .+||+|||+|+.... ....||+.|
T Consensus 172 ~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~--------~~~~gt~~y 243 (336)
T 2vuw_A 172 ASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD--------GIVVFCDVS 243 (336)
T ss_dssp HHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET--------TEEECCCCT
T ss_pred HHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC--------CcEEEeecc
Confidence 9999999 99999999999999999887 899999999976532 134799999
Q ss_pred cCccccCCCCCCCCCchhHHHHH-HHHHHhCCCCCccCChhhHHHHHHHHhh-hccccccccCCcCCCCCCChhHHHHHH
Q 001171 1008 VSPEAASTGQPTKEADVYSFGIV-LLEILTGRKPVMFTQDEDIVKWVKKQLQ-RGQISELLEPGLLELDPESSEWEEFLL 1085 (1133)
Q Consensus 1008 ~aPE~~~~~~~~~~~DvwSlG~i-l~el~tg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1133)
+|||++.+.. +.++||||++++ .+++++|..||.... .......... ..... .......+..+..
T Consensus 244 ~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~ 310 (336)
T 2vuw_A 244 MDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVL---WLHYLTDKMLKQMTFK---------TKCNTPAMKQIKR 310 (336)
T ss_dssp TCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHH---HHHHHHHHHHHTCCCS---------SCCCSHHHHHHHH
T ss_pred cChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchh---hhhHHHHhhhhhhccC---------cccchhhhhhcCH
Confidence 9999998666 889999998777 788888999984211 0011111111 11100 0111122333333
Q ss_pred hH-hhhhccCCCCCCCCCCHHHHH
Q 001171 1086 GV-KVGLLCTAPDPLDRPSMADIV 1108 (1133)
Q Consensus 1086 ~~-~li~~Cl~~dP~~RPs~~evl 1108 (1133)
.+ +++.+|++.| |++|++
T Consensus 311 ~~~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 311 KIQEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHHHHhccC-----CHHHHH
Confidence 33 8999999976 999988
No 300
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5e-32 Score=334.46 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=28.8
Q ss_pred ccccCeeecCCCcccCc-CchhhhccCCCcEEEeecCCCCccCC-ccccCccccccccccccccccc
Q 001171 626 LSRIKKLDLGQNKLSGE-IPKEISKCSSLVSLTLDMNSLSGRIP-ESFSKLSNLTTLNLSTNRLSGA 690 (1133)
Q Consensus 626 l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 690 (1133)
+++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++... ..+..+++|+.|+|++|++++.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 44455555555544432 22333444555555555555443322 2223344555555555554443
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=289.41 Aligned_cols=276 Identities=23% Similarity=0.235 Sum_probs=172.1
Q ss_pred ccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEecc
Q 001171 436 QLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLS 515 (1133)
Q Consensus 436 ~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 515 (1133)
.....++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3334455555555 2333332 255555555555554444455556666666666666665555566666666666666
Q ss_pred ccCCCCCCChhccCCCCCcEeeccCCcccccCC-CCCCCCccCcEEEcccc-cccCCCCcccccccccceeecccCccCC
Q 001171 516 NQNLSGELPIELFGLPSLQVVSLEENNLSGDVP-EGFSSLVGLQYLNLSDN-AFTGDIPATYGFLRSLVFLSLSHNQISG 593 (1133)
Q Consensus 516 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 593 (1133)
+|++++..+..+.++++|++|++++|++++..+ ..|.++++|++|++++| .+++..+..+..+++|++|++++|++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 666664444446666666666666666664333 35666667777777666 3555555666666777777777777766
Q ss_pred CCCccccCCCCccEEEecCCcccCCCccc-cccccccCeeecCCCcccCcCchhhh---ccCCCcEEEeecCCCCc----
Q 001171 594 MIPAELGACSALEVLELRSNHFTGNIPVD-ISHLSRIKKLDLGQNKLSGEIPKEIS---KCSSLVSLTLDMNSLSG---- 665 (1133)
Q Consensus 594 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~---- 665 (1133)
..|..++.+++|++|++++|+++. +|.. +..+++|+.|+|++|.+++..+..+. ....++.+++++|.+++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred cCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 666666667777777777777653 3332 34466777777777777654444332 35567777777777765
Q ss_pred cCCccccCcccccccccccccccccCCcc-ccccccCcccccccccccccCC
Q 001171 666 RIPESFSKLSNLTTLNLSTNRLSGAIPAD-LALISSLRYLNLSRNNLEGEIP 716 (1133)
Q Consensus 666 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p 716 (1133)
.+|..+..+++|+.|+|++|+++ .+|.. +..+++|++|++++|++.|.+|
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 35666777788888888888887 45555 4777888888888888887776
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.9e-31 Score=326.49 Aligned_cols=384 Identities=15% Similarity=0.119 Sum_probs=286.5
Q ss_pred hcccccceeeccCceeecccCcccCCC--CCCcEEEccCCc-ccc-cCchhhccCCCccEEEccCCccccc----CCCcc
Q 001171 336 TNVTSLRVMDLSGNFFSGNLPAAVGSL--DKLEVLRVANNS-LSG-LVPDEIAKCSLLQMFDLEGNRFSGQ----VPAFL 407 (1133)
Q Consensus 336 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l 407 (1133)
.++++|++|+|++|.+++..+..+... .+|++|+|++|. ++. .++.....+++|++|+|++|.+++. ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 367778888888887776655656553 348888888776 221 1123334778888888888887655 33345
Q ss_pred CCCCCCcEEEccCCcCc----cccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCC---CCCCCCCC
Q 001171 408 GGIRGLKIVSLGRNMFS----GLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFG---GKVPYDVG 480 (1133)
Q Consensus 408 ~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~---~~~~~~~~ 480 (1133)
.++++|+.|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.+... +..+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 66788888888888886 3344556678899999999998885 6678888999999999864332 33455678
Q ss_pred CCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCC-hhccCCCCCcEeeccCCcccc-cCCCCCCCCccCc
Q 001171 481 NLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELP-IELFGLPSLQVVSLEENNLSG-DVPEGFSSLVGLQ 558 (1133)
Q Consensus 481 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 558 (1133)
.+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+ .++..+..+++|+
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 889999999988643 3577788889999999999999764433 346789999999999 44443 3344446688999
Q ss_pred EEEccc-----------ccccCCCC-cccccccccceeecccCccCCCCCccccC-CCCccEEEec----CCcccCC---
Q 001171 559 YLNLSD-----------NAFTGDIP-ATYGFLRSLVFLSLSHNQISGMIPAELGA-CSALEVLELR----SNHFTGN--- 618 (1133)
Q Consensus 559 ~L~Ls~-----------N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~----~N~l~~~--- 618 (1133)
+|++++ |.+++... .....+++|++|+++.|++++..+..++. +++|+.|+++ .|++++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 999993 66664322 33456899999999999999877777776 8999999996 7788863
Q ss_pred --CccccccccccCeeecCCC--cccCcCchhhhc-cCCCcEEEeecCCCCcc-CCccccCcccccccccccccccccC-
Q 001171 619 --IPVDISHLSRIKKLDLGQN--KLSGEIPKEISK-CSSLVSLTLDMNSLSGR-IPESFSKLSNLTTLNLSTNRLSGAI- 691 (1133)
Q Consensus 619 --~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~- 691 (1133)
++..+..+++|+.|+|++| .+++..+..+.. +++|+.|+|++|++++. ++..+..+++|+.|+|++|++++..
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 3344677999999999854 477776666665 89999999999999874 4455678999999999999998654
Q ss_pred CccccccccCcccccccccccccCCccccCC
Q 001171 692 PADLALISSLRYLNLSRNNLEGEIPKMLSSR 722 (1133)
Q Consensus 692 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 722 (1133)
+.....+++|++|++++|++++.....+...
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred HHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence 4445678999999999999987755544433
No 303
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.2e-28 Score=276.90 Aligned_cols=281 Identities=20% Similarity=0.229 Sum_probs=188.5
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCccccc--CchhhccCCCccEEEc
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGL--VPDEIAKCSLLQMFDL 394 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L 394 (1133)
.+.+++++++++.++.. + .++|++|+|++|+++...+..|.++++|++|+|++|+++.. .+..+..+++|++|+|
T Consensus 9 ~~~l~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 34566666666666332 2 24677777777777744444567777777777777777633 2556666777777777
Q ss_pred cCCcccccCCCccCCCCCCcEEEccCCcCccccC-ccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCC
Q 001171 395 EGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIP-LSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGG 473 (1133)
Q Consensus 395 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 473 (1133)
++|.++. +|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 7777763 45556677777777777777766544 467777777777777777777667777777777777777777765
Q ss_pred -CCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCC
Q 001171 474 -KVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFS 552 (1133)
Q Consensus 474 -~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 552 (1133)
..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 4566777777777777777777776677777777777788877777766666677777777777777777777777777
Q ss_pred CCc-cCcEEEcccccccCCCC--cccccccccceeecccCccCCCCCccccC
Q 001171 553 SLV-GLQYLNLSDNAFTGDIP--ATYGFLRSLVFLSLSHNQISGMIPAELGA 601 (1133)
Q Consensus 553 ~l~-~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 601 (1133)
.++ +|++|+|++|.+++..+ .....+...+.+....+.+....|..+.+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 773 77777777777765432 11223344444555555555555554443
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.7e-29 Score=278.57 Aligned_cols=260 Identities=23% Similarity=0.256 Sum_probs=163.0
Q ss_pred CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccc--cCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEe
Q 001171 459 SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGK--IPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVV 536 (1133)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 536 (1133)
++|++|+|++|.++...+..|+.+++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3455555555555533333445555555555555555422 2344445666666666666666 455556666777777
Q ss_pred eccCCcccccCC-CCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCC-CCCccccCCCCccEEEecCCc
Q 001171 537 SLEENNLSGDVP-EGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISG-MIPAELGACSALEVLELRSNH 614 (1133)
Q Consensus 537 ~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~ 614 (1133)
++++|++++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777777665444 456667777777777777766666666667777777777777665 456666677777777777777
Q ss_pred ccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcc-cccccccccccccccCCc
Q 001171 615 FTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLS-NLTTLNLSTNRLSGAIPA 693 (1133)
Q Consensus 615 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~ 693 (1133)
+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|++++..|..+..++ +|+.|+|++|++++..+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 7665566666677777777777777665555666777777777777777776676676663 677777777777653221
Q ss_pred --cccccccCcccccccccccccCCccc
Q 001171 694 --DLALISSLRYLNLSRNNLEGEIPKML 719 (1133)
Q Consensus 694 --~l~~l~~L~~L~ls~N~l~~~~p~~~ 719 (1133)
...-+...+.+.+..+.+.+..|..+
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred HHHHHHHHhhhhhhccccccccCCchhh
Confidence 12223445555666666666666543
No 305
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=284.47 Aligned_cols=274 Identities=19% Similarity=0.213 Sum_probs=143.9
Q ss_pred cccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEcc
Q 001171 316 VLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLE 395 (1133)
Q Consensus 316 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (1133)
.....++++|+++.++.+ +. ++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 32 ~~~~c~~~~~~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 344567777777776332 22 366777777777765555566666666666666666666656666666666666666
Q ss_pred CCcccccCCCccCCCCCCcEEEccCCcCccccC-ccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCC
Q 001171 396 GNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIP-LSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGK 474 (1133)
Q Consensus 396 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 474 (1133)
+|++++..+..|+++++|++|++++|.+++..+ ..|.++++|++|++++|+ .+++.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------~~~~~ 165 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-----------------------TFTKI 165 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------SCCEE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-----------------------ccccc
Confidence 666664444445555555555555555553322 244444455555544442 23333
Q ss_pred CCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChh-ccCCCCCcEeeccCCcccccCCCCCC-
Q 001171 475 VPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIE-LFGLPSLQVVSLEENNLSGDVPEGFS- 552 (1133)
Q Consensus 475 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~- 552 (1133)
.+..++.+++|++|++++|++++..|..+..+++|++|++++|+++. +|.. +..+++|++|++++|++++..+..+.
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccccccccccc
Confidence 33444444455555555555554455555555556666666665542 2322 23355566666666655544333222
Q ss_pred --CCccCcEEEcccccccC----CCCcccccccccceeecccCccCCCCCcc-ccCCCCccEEEecCCcccC
Q 001171 553 --SLVGLQYLNLSDNAFTG----DIPATYGFLRSLVFLSLSHNQISGMIPAE-LGACSALEVLELRSNHFTG 617 (1133)
Q Consensus 553 --~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~ 617 (1133)
....++.++|+++.+++ .+|..+..+++|++|+|++|+++ .+|.. ++.+++|++|+|++|++++
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 23445555555555543 23444445555555555555555 23322 3445555555555555443
No 306
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.5e-28 Score=298.81 Aligned_cols=301 Identities=26% Similarity=0.283 Sum_probs=201.5
Q ss_pred CCCCccCCCCCCCCCCCccceeeeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceE
Q 001171 45 PLGALDGWDSSTPSAPCDWRGIVCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAV 124 (1133)
Q Consensus 45 ~~~~l~~w~~~~~~~~c~w~gv~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 124 (1133)
.....++|...+ +||.|+|..|.-.. ..-+....++.|++++|+++ .+|..+. ++|+.|
T Consensus 8 ~~~~w~~W~~~~--~~~~~~~r~~~~~~----------------~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L 66 (622)
T 3g06_A 8 YDAVWSAWRRAA--PAEESRGRAAVVQK----------------MRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTL 66 (622)
T ss_dssp --CHHHHHHHTC--CGGGHHHHHHHHHH----------------HHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEE
T ss_pred HHHHHHHHHhcC--CcchhccccccCcc----------------cccccCCCCcEEEecCCCcC-ccChhhC--CCCcEE
Confidence 344567886543 68999875442100 00111123556666666666 5555554 566666
Q ss_pred eccCCcccCcCCCccccccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCC
Q 001171 125 YLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGE 204 (1133)
Q Consensus 125 ~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~ 204 (1133)
+|++|+++ .+|. .+++|++|+|++|+|++ +|. .+++|++|+|++|.+++. |. .+++|++|++++|++++
T Consensus 67 ~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~- 135 (622)
T 3g06_A 67 VIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV-LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS- 135 (622)
T ss_dssp EECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC-CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-
T ss_pred EecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC-CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-
Confidence 66666666 4554 45666666666666653 343 446677777777777653 33 45677777777777774
Q ss_pred CcccccCccccceEecccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccC
Q 001171 205 VPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCN 284 (1133)
Q Consensus 205 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 284 (1133)
+|.. +++|++|+|++|++++ +|.. +++|+.|++++|+++++ | ..+++|+.|+|++|+|++ +|.
T Consensus 136 lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~----- 198 (622)
T 3g06_A 136 LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT----- 198 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-----
T ss_pred CCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC-----
Confidence 5543 3677777777777763 4432 35677777777777764 3 345777778888887775 332
Q ss_pred cccccccccEEeccCCcccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCC
Q 001171 285 LWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDK 364 (1133)
Q Consensus 285 ~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 364 (1133)
.+++|+.|++++|.++... ..+++|++|+|++|+|++++ ..+++|++|+|++|+|+ .+|. .+++
T Consensus 199 ---~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~ 262 (622)
T 3g06_A 199 ---LPSELYKLWAYNNRLTSLP-----ALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM---LPSG 262 (622)
T ss_dssp ---CCTTCCEEECCSSCCSSCC-----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred ---ccchhhEEECcCCcccccC-----CCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc---cccc
Confidence 2367777788888777543 12467888888888888874 45688999999999998 4555 6788
Q ss_pred CcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCC
Q 001171 365 LEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIR 411 (1133)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 411 (1133)
|++|+|++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..++
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999998 5578899999999999999999988888776554
No 307
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.3e-28 Score=286.67 Aligned_cols=236 Identities=22% Similarity=0.287 Sum_probs=172.3
Q ss_pred CccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCcc
Q 001171 158 KISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCS 237 (1133)
Q Consensus 158 ~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 237 (1133)
.+|..+++++++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+.+++
T Consensus 68 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 68 EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred ccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 46667778899999999999999999999999999999999999988888999999999999999999977777799999
Q ss_pred ccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccc
Q 001171 238 SLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVL 317 (1133)
Q Consensus 238 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L 317 (1133)
+|++|++++|+++.+.+..|.++++|+.|+|++|+..+.+|.. .|.++++|+.|++++|.+++. +.
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~---~~------- 213 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG----AFEGLFNLKYLNLGMCNIKDM---PN------- 213 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----TTTTCTTCCEEECTTSCCSSC---CC-------
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh----hccCCCCCCEEECCCCccccc---cc-------
Confidence 9999999999999888888999999999999985444444432 235666666666666666543 22
Q ss_pred cEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCC
Q 001171 318 EVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGN 397 (1133)
Q Consensus 318 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 397 (1133)
+..+++|++|+|++|.|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 214 -----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 214 -----------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp -----------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -----------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 444555555555555555555555555555555555555555555555555555555555555
Q ss_pred cccccCCCccCCCCCCcEEEccCCcCc
Q 001171 398 RFSGQVPAFLGGIRGLKIVSLGRNMFS 424 (1133)
Q Consensus 398 ~l~~~~p~~l~~l~~L~~L~L~~N~l~ 424 (1133)
+|++..+..|..+++|+.|+|++|.+.
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCCccChHHhccccCCCEEEccCCCcC
Confidence 555555555555566666666666554
No 308
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.7e-29 Score=284.33 Aligned_cols=135 Identities=18% Similarity=0.116 Sum_probs=105.6
Q ss_pred cccccchhhhhhcccccCCCccCccCCcceEEEccCCcCC-CCCCCCCC-------CCCcCcEEeccCCcCCCCCcccc-
Q 001171 139 IFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFT-GEIPGNFS-------SKSQLQLINLSYNSFSGEVPASV- 209 (1133)
Q Consensus 139 l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~-~~~p~~~~-------~l~~L~~L~ls~N~l~~~~p~~~- 209 (1133)
+++.++|+.|++++|.+ .+|..++..+++|+|++|+++ +.+|..+. ++++|++|+|++|++++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 56778889999999998 677777777888888888884 55666554 67888888888888888888765
Q ss_pred -cCccccceEecccccccCCCCccccCc-----cccceeeccccccCCCCCCcccCcCcccEEEcccCCccCC
Q 001171 210 -GQLQELEYLWLDSNHLYGTLPSAISNC-----SSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGL 276 (1133)
Q Consensus 210 -~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 276 (1133)
+.+++|++|+|++|++++. |..+.++ ++|++|++++|++++..|..|+.+++|++|+|++|++.+.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 7888888888888888766 7777666 7778888888887777777777777777777777776543
No 309
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=283.74 Aligned_cols=236 Identities=22% Similarity=0.275 Sum_probs=172.1
Q ss_pred CccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCcc
Q 001171 158 KISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCS 237 (1133)
Q Consensus 158 ~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 237 (1133)
.+|..+++++++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+.+++
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred cCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 45667778899999999999998889999999999999999999988888899999999999999999866667899999
Q ss_pred ccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccccCCCCCccccc
Q 001171 238 SLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVL 317 (1133)
Q Consensus 238 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L 317 (1133)
+|++|++++|+++.+.+..|.++++|++|+|++|+..+.++.. .|.++++|+.|++++|.++.. +.
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~---~~------- 202 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMCNLREI---PN------- 202 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----TTTTCSSCCEEECTTSCCSSC---CC-------
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc----hhhcccccCeecCCCCcCccc---cc-------
Confidence 9999999999999888889999999999999986544444432 235666666666666666543 12
Q ss_pred cEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCC
Q 001171 318 EVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGN 397 (1133)
Q Consensus 318 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 397 (1133)
+..+++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 203 -----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 203 -----------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp -----------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred -----------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 445555555555555555555555555555555555555555555555555555666666666
Q ss_pred cccccCCCccCCCCCCcEEEccCCcCc
Q 001171 398 RFSGQVPAFLGGIRGLKIVSLGRNMFS 424 (1133)
Q Consensus 398 ~l~~~~p~~l~~l~~L~~L~L~~N~l~ 424 (1133)
+|++..+..|..+++|+.|+|++|.+.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccChhHhccccCCCEEEcCCCCcc
Confidence 665555555555666666666666554
No 310
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.8e-27 Score=281.03 Aligned_cols=249 Identities=22% Similarity=0.246 Sum_probs=161.9
Q ss_pred ccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEc
Q 001171 315 SVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDL 394 (1133)
Q Consensus 315 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (1133)
.....++.++++++.++. .+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 54 ~~~~~v~c~~~~l~~iP~-~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 54 NQFSKVVCTRRGLSEVPQ-GIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSSCEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEECCCCcCccCC-CCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 345667777777777633 332 57778888888887777777777888888888888777777777777777777777
Q ss_pred cCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeeccc-ccccccCChhhcCCCCCcEEecccCcCCC
Q 001171 395 EGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSE-NDIRGNIPEEITRLSNLTTLNLSYNKFGG 473 (1133)
Q Consensus 395 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 473 (1133)
++|++++..+..|.++++|++|+|++|.++...+..|.++++|++|++++ |.+....+..|..+++|++|+|++|.+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 77777766666677777777777777777766666677777777777776 44444444456666666666666666653
Q ss_pred CCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCC
Q 001171 474 KVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSS 553 (1133)
Q Consensus 474 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 553 (1133)
. | . +..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|.+
T Consensus 211 ~-~-~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 211 M-P-N------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp C-C-C------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred c-c-c------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 2 2 2 344455555555555555555555555555555555555555555555666
Q ss_pred CccCcEEEcccccccCCCCcccccccccceeecccCccC
Q 001171 554 LVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQIS 592 (1133)
Q Consensus 554 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1133)
+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 666666666666666555555666666666666666554
No 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-27 Score=264.84 Aligned_cols=236 Identities=25% Similarity=0.256 Sum_probs=122.9
Q ss_pred CCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccC-CCCCCChhccCCCCCcEeec
Q 001171 460 NLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQN-LSGELPIELFGLPSLQVVSL 538 (1133)
Q Consensus 460 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L 538 (1133)
+|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. ++...|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444443333444444444444444444444444445555555555555554 44333444555555555555
Q ss_pred cCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCC
Q 001171 539 EENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGN 618 (1133)
Q Consensus 539 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 618 (1133)
++|++++..+..|.++++|++|++++|++++..+..++.+++|++|+|++|++++..+..+..+++|++|++++|++++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 55555544455555555555555555555544444455555555555555555544444455555666666666666555
Q ss_pred CccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcccc
Q 001171 619 IPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLA 696 (1133)
Q Consensus 619 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 696 (1133)
.|..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|++....+.. .-...++.+..+.|.+....|..+.
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 5555555566666666666666544445566666666666666665432211 1123344555555666555555543
No 312
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=278.79 Aligned_cols=251 Identities=23% Similarity=0.270 Sum_probs=167.5
Q ss_pred ccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEE
Q 001171 313 CVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMF 392 (1133)
Q Consensus 313 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 392 (1133)
|......++.++++++.++.. +. +++++|+|++|+|++..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 41 C~~~~~~v~c~~~~l~~iP~~-~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 41 CSNQFSKVICVRKNLREVPDG-IS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp ECTTSCEEECCSCCCSSCCSC-CC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred eCCCCCEEEeCCCCcCcCCCC-CC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 333456778888888887443 32 578888888888887777888888888888888888888777888888888888
Q ss_pred EccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeeccc-ccccccCChhhcCCCCCcEEecccCcC
Q 001171 393 DLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSE-NDIRGNIPEEITRLSNLTTLNLSYNKF 471 (1133)
Q Consensus 393 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~i~~~~~~~l~~l~~L~~L~Ls~N~l 471 (1133)
+|++|+|+...+..|.++++|++|+|++|.++...+..|.++++|++|++++ |.+....+..|.++++|++|+|++|.+
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 8888888877677788888888888888888877777777888888888877 445544445667777777777777776
Q ss_pred CCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCC
Q 001171 472 GGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGF 551 (1133)
Q Consensus 472 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 551 (1133)
+. +| .+..+++|++|+|++|++++..|..|..+++|+.|++++|+++ +..+..|
T Consensus 198 ~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~ 251 (440)
T 3zyj_A 198 RE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ------------------------VIERNAF 251 (440)
T ss_dssp SS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------------------------EECTTSS
T ss_pred cc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee------------------------EEChhhh
Confidence 62 23 2445555555555555555444445555555555555554444 4444455
Q ss_pred CCCccCcEEEcccccccCCCCcccccccccceeecccCccC
Q 001171 552 SSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQIS 592 (1133)
Q Consensus 552 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1133)
.++++|++|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55555555555555555444444555555555555555543
No 313
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.7e-28 Score=266.57 Aligned_cols=225 Identities=25% Similarity=0.245 Sum_probs=159.0
Q ss_pred cEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCC
Q 001171 318 EVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGN 397 (1133)
Q Consensus 318 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 397 (1133)
.+++++++.++.++. .+ .++|++|+|++|.|++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666666666632 22 356777777777777666666777777777777777777666777777777777777777
Q ss_pred c-ccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCC
Q 001171 398 R-FSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVP 476 (1133)
Q Consensus 398 ~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 476 (1133)
+ ++...|..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|+|++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556677777777777777777776666777777777777777777776666667777777777777777776555
Q ss_pred CCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccc
Q 001171 477 YDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSG 545 (1133)
Q Consensus 477 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 545 (1133)
..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|.+..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 567777777777777777777777777777777777777777776555667777777777777777654
No 314
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.5e-27 Score=268.09 Aligned_cols=234 Identities=21% Similarity=0.282 Sum_probs=123.2
Q ss_pred CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeec
Q 001171 459 SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSL 538 (1133)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 538 (1133)
.+++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 33444444444444444444444 44444555555555555555555 44555555555555555
Q ss_pred cCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCC
Q 001171 539 EENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGN 618 (1133)
Q Consensus 539 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 618 (1133)
++|++.+.+|..+... ..+..+..+++|++|+|++|+++ .+|..++.+++|++|+|++|++++
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 5554444444433220 01122334555555555555555 445555555555555555555553
Q ss_pred CccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcccccc
Q 001171 619 IPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALI 698 (1133)
Q Consensus 619 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 698 (1133)
+|..+..+++|++|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+.++++|+.|+|++|++.+.+|..+.++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 44445555555555555555555555555666666666666666555666556666666666666666666666666666
Q ss_pred ccCccccccccccc
Q 001171 699 SSLRYLNLSRNNLE 712 (1133)
Q Consensus 699 ~~L~~L~ls~N~l~ 712 (1133)
++|+.+++..|.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 66666666555443
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-28 Score=278.08 Aligned_cols=262 Identities=21% Similarity=0.224 Sum_probs=149.5
Q ss_pred ccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCcc
Q 001171 418 LGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSG 497 (1133)
Q Consensus 418 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 497 (1133)
++.+.+.......+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ +..+++|++|++++|++++
T Consensus 17 ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp CCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE
T ss_pred ccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc
Confidence 33333333333333344445555555555554444444555555555555554443222 4444444444444444432
Q ss_pred ccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCccccc
Q 001171 498 KIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGF 577 (1133)
Q Consensus 498 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 577 (1133)
.. ..++|++|+++ +|++++..+.. +++|++|++++|++++..+..++.
T Consensus 95 l~-----~~~~L~~L~l~------------------------~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 95 LL-----VGPSIETLHAA------------------------NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp EE-----ECTTCCEEECC------------------------SSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGG
T ss_pred cc-----CCCCcCEEECC------------------------CCccCCcCccc---cCCCCEEECCCCCCCCccchhhhc
Confidence 11 11344444444 44444333222 344555666666665555555556
Q ss_pred ccccceeecccCccCCCCCccc-cCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEE
Q 001171 578 LRSLVFLSLSHNQISGMIPAEL-GACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSL 656 (1133)
Q Consensus 578 l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 656 (1133)
+++|++|+|++|++++..+..+ ..+++|++|+|++|++++. +. ...+++|++|+|++|++++ +|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence 6666666666666665555544 2566667777777766642 22 2346777777777777773 44557777788888
Q ss_pred EeecCCCCccCCccccCccccccccccccccc-ccCCccccccccCccccccc-ccccccCCc
Q 001171 657 TLDMNSLSGRIPESFSKLSNLTTLNLSTNRLS-GAIPADLALISSLRYLNLSR-NNLEGEIPK 717 (1133)
Q Consensus 657 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~~~~p~ 717 (1133)
+|++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..+++|+.|++++ +.++|..|.
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 88888777 46777777888888888888887 66777777888888888884 456666554
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-28 Score=275.65 Aligned_cols=266 Identities=19% Similarity=0.197 Sum_probs=160.2
Q ss_pred cEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCC
Q 001171 318 EVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGN 397 (1133)
Q Consensus 318 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 397 (1133)
+.++++.+.+.......+..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..+ +..+++|++|+|++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555555554444455555566666666666665555566666666666666666655433 556666666666666
Q ss_pred cccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCC
Q 001171 398 RFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPY 477 (1133)
Q Consensus 398 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 477 (1133)
++++.. ..++|+.|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|+|++|.+++..+.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 665322 2255666666666666544333 34566666666666655555566666666666666666655444
Q ss_pred CC-CCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCcc
Q 001171 478 DV-GNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVG 556 (1133)
Q Consensus 478 ~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 556 (1133)
.+ ..+++|++|++++|.+++..+ ...+++|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 44 245666666666666654421 2236677777777777763 3444667777777777777776 35566777777
Q ss_pred CcEEEccccccc-CCCCcccccccccceeeccc-CccCCCCCc
Q 001171 557 LQYLNLSDNAFT-GDIPATYGFLRSLVFLSLSH-NQISGMIPA 597 (1133)
Q Consensus 557 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~ 597 (1133)
|+.|++++|.++ +.++..+..+++|+.|++++ +.+++..|.
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 777777777776 55666677777777777773 345544443
No 317
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.9e-26 Score=276.09 Aligned_cols=268 Identities=29% Similarity=0.372 Sum_probs=142.1
Q ss_pred CCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecc
Q 001171 364 KLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLS 443 (1133)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 443 (1133)
+++.|++++|.++ .+|..+. ++|++|+|++|.|+. +|. .+++|++|+|++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4566666666665 3343333 456666666666552 333 34455555555555543 222 33445555555
Q ss_pred cccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCC
Q 001171 444 ENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGEL 523 (1133)
Q Consensus 444 ~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 523 (1133)
+|+|++. |. .+++|+.|++++|+++ + +|.. +++|++|++++|++++ +
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~------------------------~-lp~~---l~~L~~L~Ls~N~l~~-l 156 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLT------------------------S-LPVL---PPGLQELSVSDNQLAS-L 156 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCS------------------------C-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCC------------------------c-CCCC---CCCCCEEECcCCcCCC-c
Confidence 5554432 22 2344444444444444 2 2222 2445555555555542 2
Q ss_pred ChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCC
Q 001171 524 PIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACS 603 (1133)
Q Consensus 524 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 603 (1133)
|. .+++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++ .+|.. ++
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~ 221 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PS 221 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CT
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CC
Confidence 22 23445555555555553 22 234556666666666653 222 1355666666666666 33332 35
Q ss_pred CccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccc
Q 001171 604 ALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLS 683 (1133)
Q Consensus 604 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 683 (1133)
+|++|+|++|+|++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|+
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 66666666666664 44 33456666666666666 3444 4566667777777766 556666667777777777
Q ss_pred cccccccCCccccccc
Q 001171 684 TNRLSGAIPADLALIS 699 (1133)
Q Consensus 684 ~N~l~~~~p~~l~~l~ 699 (1133)
+|++++.+|..+..++
T Consensus 293 ~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 293 GNPLSERTLQALREIT 308 (622)
T ss_dssp SCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhcc
Confidence 7777666666555544
No 318
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.6e-28 Score=272.65 Aligned_cols=202 Identities=22% Similarity=0.223 Sum_probs=109.9
Q ss_pred CCCCCcEEEccCCcCccccCccc--cCccccceeecccccccccCChhhcCC-----CCCcEEecccCcCCCCCCCCCCC
Q 001171 409 GIRGLKIVSLGRNMFSGLIPLSF--GNLSQLETLNLSENDIRGNIPEEITRL-----SNLTTLNLSYNKFGGKVPYDVGN 481 (1133)
Q Consensus 409 ~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~i~~~~~~~l~~l-----~~L~~L~Ls~N~l~~~~~~~~~~ 481 (1133)
++++|++|+|++|.+++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|+|++|++++..+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 34445555555555554444443 5555666666666666554 5555544 66666666666666666666666
Q ss_pred CCCCcEEEcccCCCccc--cCCC--cCCcccccEEeccccCCCCC--CC-hhccCCCCCcEeeccCCcccccCC-CCCCC
Q 001171 482 LKGLLVLNLSASGFSGK--IPGS--IGSLMRLTTLDLSNQNLSGE--LP-IELFGLPSLQVVSLEENNLSGDVP-EGFSS 553 (1133)
Q Consensus 482 l~~L~~L~L~~N~l~~~--~~~~--~~~l~~L~~L~Ls~N~l~~~--~p-~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~ 553 (1133)
+++|++|++++|++.+. .+.. +..+++|++|++++|++++. ++ ..+.++++|++|++++|++++..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 66666666666665543 1222 25667777777777776621 11 222355666666666666665443 33444
Q ss_pred CccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCccc
Q 001171 554 LVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFT 616 (1133)
Q Consensus 554 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 616 (1133)
+++|++|+|++|+++ .+|..+. ++|++|+|++|+|++. |. +..+++|++|+|++|+++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 555555555555555 3444333 4455555555555433 33 444455555555555444
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.5e-27 Score=280.65 Aligned_cols=234 Identities=25% Similarity=0.273 Sum_probs=163.6
Q ss_pred CCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeecc
Q 001171 460 NLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLE 539 (1133)
Q Consensus 460 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 539 (1133)
+|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 45555555555554444455555555555555555554443 555556666666666555321 22566666666
Q ss_pred CCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCcccc-CCCCccEEEecCCcccCC
Q 001171 540 ENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELG-ACSALEVLELRSNHFTGN 618 (1133)
Q Consensus 540 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~ 618 (1133)
+|.+++..+.. +++|+.|+|++|.+++..|..++.+++|++|+|++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 66666554443 45677778888887777777777788888888888888877777765 678888888888888753
Q ss_pred CccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCccccccccccccccc-ccCCccccc
Q 001171 619 IPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLS-GAIPADLAL 697 (1133)
Q Consensus 619 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~ 697 (1133)
|. +..+++|+.|+|++|.|++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 32 3457888888888888885 44558888888999999888885 6777888889999999999887 677778888
Q ss_pred cccCcccccc
Q 001171 698 ISSLRYLNLS 707 (1133)
Q Consensus 698 l~~L~~L~ls 707 (1133)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 8888888887
No 320
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.3e-28 Score=304.20 Aligned_cols=374 Identities=16% Similarity=0.141 Sum_probs=233.0
Q ss_pred hhcccccceeeccCceeecccCcccC-CCCCCcEEEccCC-ccccc-CchhhccCCCccEEEccCCcccccCCCccC---
Q 001171 335 LTNVTSLRVMDLSGNFFSGNLPAAVG-SLDKLEVLRVANN-SLSGL-VPDEIAKCSLLQMFDLEGNRFSGQVPAFLG--- 408 (1133)
Q Consensus 335 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--- 408 (1133)
+..+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+.++.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34566777777777776655555554 5667777777776 44332 233444677777777777776654443332
Q ss_pred -CCCCCcEEEccCCc--Cccc-cCccccCccccceeecccc-cccccCChhhcCCCCCcEEecccCc-------CCCCCC
Q 001171 409 -GIRGLKIVSLGRNM--FSGL-IPLSFGNLSQLETLNLSEN-DIRGNIPEEITRLSNLTTLNLSYNK-------FGGKVP 476 (1133)
Q Consensus 409 -~l~~L~~L~L~~N~--l~~~-~p~~~~~l~~L~~L~L~~N-~i~~~~~~~l~~l~~L~~L~Ls~N~-------l~~~~~ 476 (1133)
.+++|+.|++++|. ++.. ++..+.++++|++|++++| .+.+ ++..+..+++|++|+++.+. +.+ ++
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~ 258 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LS 258 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HH
Confidence 45577777777765 2211 1112234577777777776 3443 56666677777777754432 222 22
Q ss_pred CCCCCCCCCcEE-EcccCCCccccCCCcCCcccccEEeccccCCCCCCCh-hccCCCCCcEeeccCCccccc-CCCCCCC
Q 001171 477 YDVGNLKGLLVL-NLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPI-ELFGLPSLQVVSLEENNLSGD-VPEGFSS 553 (1133)
Q Consensus 477 ~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~-~~~~~~~ 553 (1133)
..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.... .+..+++|++|++++| +.+. ++.....
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 245667777777 3333222 23444445677888888888876533222 2456788888888877 4322 2222234
Q ss_pred CccCcEEEccc---------ccccCCCCcccc-cccccceeecccCccCCCCCcccc-CCCCccEEEec--C----Cccc
Q 001171 554 LVGLQYLNLSD---------NAFTGDIPATYG-FLRSLVFLSLSHNQISGMIPAELG-ACSALEVLELR--S----NHFT 616 (1133)
Q Consensus 554 l~~L~~L~Ls~---------N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~--~----N~l~ 616 (1133)
+++|++|++++ +.+++.....+. .+++|++|.++.|.+++..+..+. .+++|+.|+++ + |.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 67788888733 445433333333 477888888888888766555554 47888888888 3 5555
Q ss_pred CC-----CccccccccccCeeecCCCcccCcCchhhhc-cCCCcEEEeecCCCCccCCccc-cCcccccccccccccccc
Q 001171 617 GN-----IPVDISHLSRIKKLDLGQNKLSGEIPKEISK-CSSLVSLTLDMNSLSGRIPESF-SKLSNLTTLNLSTNRLSG 689 (1133)
Q Consensus 617 ~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~ 689 (1133)
+. ++..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 21 112256678888888877 677666666665 8888888888888877666555 567888888888888865
Q ss_pred cCCcc-ccccccCcccccccccccc
Q 001171 690 AIPAD-LALISSLRYLNLSRNNLEG 713 (1133)
Q Consensus 690 ~~p~~-l~~l~~L~~L~ls~N~l~~ 713 (1133)
..+.. ...+++|+.|++++|+++.
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 55443 3457888888888888754
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.7e-26 Score=272.70 Aligned_cols=234 Identities=22% Similarity=0.229 Sum_probs=149.0
Q ss_pred CccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecc
Q 001171 388 LLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLS 467 (1133)
Q Consensus 388 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 467 (1133)
+|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|++|+|++|.|++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 56666666666655555556666666666666666655444 666666677777776666432 22667777777
Q ss_pred cCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhcc-CCCCCcEeeccCCccccc
Q 001171 468 YNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELF-GLPSLQVVSLEENNLSGD 546 (1133)
Q Consensus 468 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~ 546 (1133)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7777655443 245677777777777777677777777777777777777766666665 577777777777777655
Q ss_pred CCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCccc-CCCcccccc
Q 001171 547 VPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFT-GNIPVDISH 625 (1133)
Q Consensus 547 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~ 625 (1133)
.+ +..+++|++|+|++|.+++..| .+..+++|+.|+|++|.|++ +|..++.+++|+.|++++|.+. +.+|..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 32 2246677777777777765333 36666666677776666663 5555666666666666666665 444555555
Q ss_pred ccccCeeecC
Q 001171 626 LSRIKKLDLG 635 (1133)
Q Consensus 626 l~~L~~L~Ls 635 (1133)
++.|+.|+++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 5555555554
No 322
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.93 E-value=2.3e-27 Score=286.77 Aligned_cols=184 Identities=17% Similarity=0.098 Sum_probs=126.7
Q ss_pred ccccccceeEEEEE-ECCceEEEEEEcccCCc-----------CHHHHHHHHHHHhhc-cCCCeeeEEEEEeCCCCcEEE
Q 001171 844 VLSRGRYGLIFKAS-YQDGMVLSIRRLRDGTI-----------DENTFRKEAEALGKV-KHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 844 ~lg~G~~g~Vy~~~-~~~g~~vavK~~~~~~~-----------~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~~l 910 (1133)
..+.|++|.++.++ .-.|+.||+|++.+... ..++|.+|+++|+++ .|+||+++++++++.. ..||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~-~~yL 319 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQ-SGWL 319 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSS-EEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECC-EEEE
Confidence 35677777776663 33588999999965421 135689999999999 7999999999998864 4599
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||++|++|.+++.+.+. ++. ..|+.||+.||+|+|++|||||||||+|||++.+|.+||+|||+|+....
T Consensus 320 VMEyv~G~~L~d~i~~~~~-----l~~---~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~ 391 (569)
T 4azs_A 320 VMEKLPGRLLSDMLAAGEE-----IDR---EKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ 391 (569)
T ss_dssp EEECCCSEEHHHHHHTTCC-----CCH---HHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred EEecCCCCcHHHHHHhCCC-----CCH---HHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence 9999999999999986432 443 35889999999999999999999999999999999999999999975432
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHhCCCC
Q 001171 991 TPAEASSSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILTGRKP 1040 (1133)
Q Consensus 991 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~tg~~P 1040 (1133)
. .......+||+.|||||++.+ .+..++|+||+|++++++.++..|
T Consensus 392 ~---~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 392 D---CSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp -----CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred C---CccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 2 223345679999999999965 567889999999998877665443
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.3e-25 Score=242.17 Aligned_cols=216 Identities=25% Similarity=0.337 Sum_probs=129.2
Q ss_pred CCCccceeeeCC-CceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCC
Q 001171 59 APCDWRGIVCYN-NRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPL 137 (1133)
Q Consensus 59 ~~c~w~gv~c~~-~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~ 137 (1133)
++|.|.|+.|+- ..++.+++.+.+++. +|..+. +.|++|+|++|++++..+..|+++++|+.|+|++|++++..+.
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 689999999963 334556666666553 443332 4566666666666654444566666666666666666632222
Q ss_pred ccccccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccce
Q 001171 138 SIFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEY 217 (1133)
Q Consensus 138 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 217 (1133)
.+.++++| ++|+|++|.+++..+..|..+++|++|++++|++++..|..++.+++|++
T Consensus 80 ~~~~l~~L----------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 80 IFKELKNL----------------------ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp TTSSCTTC----------------------CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hhcCCCCC----------------------CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 34455544 55555555555555555666666666666666666555555666666666
Q ss_pred EecccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEec
Q 001171 218 LWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQL 297 (1133)
Q Consensus 218 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l 297 (1133)
|+|++|++++..+..+.++++|++|++++|+++++.+..|..+++|++|+|++|++++..+.. |..+++|+.|++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l 212 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA-----FDSLEKLKMLQL 212 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-----TTTCTTCCEEEC
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH-----hccccCCCEEEe
Confidence 666666666444444566666666666666666655556666666666666666666433322 255666666666
Q ss_pred cCCcccc
Q 001171 298 GFNAFTG 304 (1133)
Q Consensus 298 ~~n~l~~ 304 (1133)
++|.+..
T Consensus 213 ~~N~~~c 219 (270)
T 2o6q_A 213 QENPWDC 219 (270)
T ss_dssp CSSCBCC
T ss_pred cCCCeeC
Confidence 6666543
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4.1e-28 Score=299.61 Aligned_cols=433 Identities=15% Similarity=0.094 Sum_probs=228.6
Q ss_pred cccCcCcccEEEcccCCccC---Cccccc-------ccCcccccccccEEeccCCcccccccCCCCCccccccEEeccCC
Q 001171 256 TIGRISTLQVLSLSRNELTG---LVPVSV-------LCNLWGNISSLRIVQLGFNAFTGVVKPPNGRCVSVLEVLDLQNN 325 (1133)
Q Consensus 256 ~~~~l~~L~~L~Ls~N~l~~---~~p~~~-------~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 325 (1133)
.+.++++|+.|+|++|.... ..|... +...+..+++|+.|++++|.+++.........+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45677889999999886321 111110 01112344556666666555544221000112334555555544
Q ss_pred -ccccc-CCchhhcccccceeeccCceeecccCccc----CCCCCCcEEEccCCc--cccc-CchhhccCCCccEEEccC
Q 001171 326 -RIRAV-FPSWLTNVTSLRVMDLSGNFFSGNLPAAV----GSLDKLEVLRVANNS--LSGL-VPDEIAKCSLLQMFDLEG 396 (1133)
Q Consensus 326 -~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~Ls~ 396 (1133)
.++.. .+..+.++++|++|+|++|.+++..+.++ ..+++|++|++++|. ++.. ++..+..+++|++|+|++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33321 12223344555555555555443322222 233445555555443 1100 011122334444444444
Q ss_pred C-cccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEE-ecccCcCCCC
Q 001171 397 N-RFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTL-NLSYNKFGGK 474 (1133)
Q Consensus 397 N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L-~Ls~N~l~~~ 474 (1133)
| .+.+ +|..+..+++|+.|+++.+.. +++.|.+.+ ++..+.++++|+.| .+.+... +.
T Consensus 221 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~-----------------~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~ 280 (594)
T 2p1m_B 221 AVPLEK-LATLLQRAPQLEELGTGGYTA-----------------EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AY 280 (594)
T ss_dssp TSCHHH-HHHHHHHCTTCSEEECSBCCC-----------------CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GG
T ss_pred CCcHHH-HHHHHhcCCcceEcccccccC-----------------ccchhhHHH-HHHHHhcCCCcccccCCcccch-hh
Confidence 4 2222 333444444444444322210 022223332 22345555556555 2222211 12
Q ss_pred CCCCCCCCCCCcEEEcccCCCccccC-CCcCCcccccEEeccccCCCCCCChhc-cCCCCCcEeecc---------CCcc
Q 001171 475 VPYDVGNLKGLLVLNLSASGFSGKIP-GSIGSLMRLTTLDLSNQNLSGELPIEL-FGLPSLQVVSLE---------ENNL 543 (1133)
Q Consensus 475 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~---------~N~l 543 (1133)
++..+..+++|++|++++|.+++... ..+..+++|++|++++| ++......+ ..+++|++|++. .+.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 22223345566666666666543322 12345666777777666 332111122 246667777663 3344
Q ss_pred cccCCCCC-CCCccCcEEEcccccccCCCCcccc-cccccceeecc--c----CccCCCC-----CccccCCCCccEEEe
Q 001171 544 SGDVPEGF-SSLVGLQYLNLSDNAFTGDIPATYG-FLRSLVFLSLS--H----NQISGMI-----PAELGACSALEVLEL 610 (1133)
Q Consensus 544 ~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~l~~l~~L~~L~L 610 (1133)
++.....+ .++++|++|+++.|.+++.....+. .+++|++|+++ + |.+++.. +..+..+++|+.|+|
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 43222222 2367888888888888765555554 57888888888 4 5665321 122567889999999
Q ss_pred cCCcccCCCcccccc-ccccCeeecCCCcccCcCchhh-hccCCCcEEEeecCCCCccCCc-cccCcccccccccccccc
Q 001171 611 RSNHFTGNIPVDISH-LSRIKKLDLGQNKLSGEIPKEI-SKCSSLVSLTLDMNSLSGRIPE-SFSKLSNLTTLNLSTNRL 687 (1133)
Q Consensus 611 ~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l 687 (1133)
++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+.|++++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 77 666555555554 7889999999999987666666 6789999999999999765554 345589999999999998
Q ss_pred cccCCccc-cccccCccccccccc
Q 001171 688 SGAIPADL-ALISSLRYLNLSRNN 710 (1133)
Q Consensus 688 ~~~~p~~l-~~l~~L~~L~ls~N~ 710 (1133)
+......+ ..++.|+...+..+.
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CHHHHHHHHHhCCCCEEEEecCCC
Confidence 65544444 345666655555443
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=8.4e-25 Score=241.60 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=135.8
Q ss_pred cccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecc
Q 001171 508 RLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLS 587 (1133)
Q Consensus 508 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 587 (1133)
+|++|++++|++++..+..+.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555555555555566666666666666665555556666666666666
Q ss_pred cCccCCCCCccccCCCCccEEEecCCcccCC-CccccccccccCeeecCCCcccCcCchhhhccCCCc----EEEeecCC
Q 001171 588 HNQISGMIPAELGACSALEVLELRSNHFTGN-IPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLV----SLTLDMNS 662 (1133)
Q Consensus 588 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~ 662 (1133)
+|++++..+..++.+++|++|++++|++++. +|..+..+++|+.|+|++|++++..+..+..+.+|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655555566666666777776666642 466677777777777777777765566666666666 77888888
Q ss_pred CCccCCccccCcccccccccccccccccCCccccccccCcccccccccccccCCc
Q 001171 663 LSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIPK 717 (1133)
Q Consensus 663 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 717 (1133)
+++..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 87655554443 4788888888888866555667888888888888888887763
No 326
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.5e-24 Score=236.60 Aligned_cols=180 Identities=26% Similarity=0.305 Sum_probs=94.0
Q ss_pred ccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEcc
Q 001171 340 SLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLG 419 (1133)
Q Consensus 340 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 419 (1133)
+|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45566666666655544455556666666666666555555555555566666666665555555555555555555555
Q ss_pred CCcCccccCccccCccccceeeccccccccc-CChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCc----EEEcccCC
Q 001171 420 RNMFSGLIPLSFGNLSQLETLNLSENDIRGN-IPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLL----VLNLSASG 494 (1133)
Q Consensus 420 ~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L~~N~ 494 (1133)
+|.+++..+..+.++++|++|++++|++++. +|..+..+++|++|+|++|++++..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555555444555555556666555555542 355555555555555555555544444443333333 34444444
Q ss_pred CccccCCCcCCcccccEEeccccCCC
Q 001171 495 FSGKIPGSIGSLMRLTTLDLSNQNLS 520 (1133)
Q Consensus 495 l~~~~~~~~~~l~~L~~L~Ls~N~l~ 520 (1133)
+++..+..+.. .+|+.|++++|+++
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred ccccCccccCC-CcccEEECCCCcee
Confidence 44332222222 23444444444444
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.5e-24 Score=235.83 Aligned_cols=229 Identities=18% Similarity=0.276 Sum_probs=148.9
Q ss_pred cccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEec
Q 001171 141 NLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWL 220 (1133)
Q Consensus 141 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L 220 (1133)
.+.++..+++..+.+...+...-.++|+.|++++|.++.. ..+..+++|++|++++|++++ + ..++.+++|++|++
T Consensus 17 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred hHHHHHHHHhcCcccccccccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence 4556777777777776555444457788888888888743 357778888888888888876 3 36778888888888
Q ss_pred ccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCC
Q 001171 221 DSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFN 300 (1133)
Q Consensus 221 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 300 (1133)
++|++++..+..+.++++|++|++++|++++..+..|..+++|++|+|++|++++..+..+ +++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~--------- 158 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF-----DKLTN--------- 158 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTT---------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh-----ccCcc---------
Confidence 8888876666667778888888888888877777777777777777777777764433211 23333
Q ss_pred cccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCc
Q 001171 301 AFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVP 380 (1133)
Q Consensus 301 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 380 (1133)
|++|++++|+|+++.+..|..+++|++|+|++|++++..+..|+.+++|++|++++|.+.+.
T Consensus 159 ----------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-- 220 (272)
T 3rfs_A 159 ----------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-- 220 (272)
T ss_dssp ----------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--
T ss_pred ----------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--
Confidence 33344444444444455556666666666666666655555556666666666666655432
Q ss_pred hhhccCCCccEEEccCCcccccCCCccCCC
Q 001171 381 DEIAKCSLLQMFDLEGNRFSGQVPAFLGGI 410 (1133)
Q Consensus 381 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 410 (1133)
+++|++|+++.|.++|.+|.+++.+
T Consensus 221 -----~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 -----CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp -----TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred -----CcHHHHHHHHHHhCCCcccCccccc
Confidence 3345555566666655555555443
No 328
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2e-23 Score=229.51 Aligned_cols=205 Identities=24% Similarity=0.314 Sum_probs=140.7
Q ss_pred ccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeeccc
Q 001171 509 LTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSH 588 (1133)
Q Consensus 509 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 588 (1133)
.+.+++++++++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|+++...+..|..+++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455666666655 3444332 4566666666666655555666666666666666666655555556667777777777
Q ss_pred CccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCC
Q 001171 589 NQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIP 668 (1133)
Q Consensus 589 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 668 (1133)
|++++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77765555566667777777777777776555566777777777777777775555557777788888888888776666
Q ss_pred ccccCcccccccccccccccccCCccccccccCcccccccccccccCC
Q 001171 669 ESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIP 716 (1133)
Q Consensus 669 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 716 (1133)
..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+.++
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 667778888888888888876555567778888888888888876554
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-23 Score=231.95 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=103.6
Q ss_pred hhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCc
Q 001171 335 LTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLK 414 (1133)
Q Consensus 335 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 414 (1133)
+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++..+..|.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4455555555555555542 1 2344555555555555555442 2444555555555555555544444444444555
Q ss_pred EEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCC
Q 001171 415 IVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASG 494 (1133)
Q Consensus 415 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 494 (1133)
+|+|++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------- 170 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ---------------------- 170 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------------------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC----------------------
Confidence 5555554444444444444444444444444444433333444444444444444444
Q ss_pred CccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcc
Q 001171 495 FSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPAT 574 (1133)
Q Consensus 495 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 574 (1133)
+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|++|+++.|.++|.+|..
T Consensus 171 --~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 171 --SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp --CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred --ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 33333444444444555555554444444444555555555555544432 234555566666666666655
Q ss_pred cccccc
Q 001171 575 YGFLRS 580 (1133)
Q Consensus 575 ~~~l~~ 580 (1133)
++.++.
T Consensus 242 ~~~~~~ 247 (272)
T 3rfs_A 242 AGSVAP 247 (272)
T ss_dssp TSCBCG
T ss_pred ccccCC
Confidence 554443
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.5e-23 Score=230.82 Aligned_cols=204 Identities=26% Similarity=0.248 Sum_probs=131.2
Q ss_pred CcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCccccccccccee
Q 001171 505 SLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFL 584 (1133)
Q Consensus 505 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 584 (1133)
++++++++++++|.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+. +.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 3444455555555554 3333332 3455555555555555555555555555555555555533221 456666666
Q ss_pred ecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCC
Q 001171 585 SLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLS 664 (1133)
Q Consensus 585 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 664 (1133)
+|++|+|+ .+|..+..+++|++|+|++|++++..+..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 66666666 45666666777777777777777655566777777777777777777655566677777777777777777
Q ss_pred ccCCccccCcccccccccccccccccCCccccccccCcccccccccccccC
Q 001171 665 GRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEI 715 (1133)
Q Consensus 665 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 715 (1133)
...+..|..+++|+.|+|++|+++ .+|..+....+|+.|+|++|++.+.+
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 655556677788888888888887 67777777778888888888876544
No 331
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.4e-23 Score=223.45 Aligned_cols=189 Identities=22% Similarity=0.272 Sum_probs=107.3
Q ss_pred CCCccceeeeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCc
Q 001171 59 APCDWRGIVCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLS 138 (1133)
Q Consensus 59 ~~c~w~gv~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~ 138 (1133)
.||.|.|++|..+ .+.+++++++++ .+|..+. ++|+.|+|++|++++..|..
T Consensus 3 ~Cp~~~gC~C~~~-------------------------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~ 54 (251)
T 3m19_A 3 TCETVTGCTCNEG-------------------------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDAT 54 (251)
T ss_dssp -CHHHHSSEEEGG-------------------------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTT
T ss_pred cCCCCCceEcCCC-------------------------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhH
Confidence 4889999999632 224444444444 3443333 34555555555555444444
Q ss_pred cccccchhhhhhcccccCCCccCcc--CCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccc
Q 001171 139 IFNLTNLLVLNVAHNLLSGKISADI--SPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELE 216 (1133)
Q Consensus 139 l~~l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 216 (1133)
+.++++|++|+|++|.+++..+..+ .++|++|+|++|++++..+..|..+++|++|+|++|++++..+..++.+++|+
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence 4444444333333333332222111 13445556666666655556666666677777777766655555556666666
Q ss_pred eEecccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccC
Q 001171 217 YLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTG 275 (1133)
Q Consensus 217 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 275 (1133)
+|+|++|++++..+..+.++++|++|++++|+++++.+..|..+++|++|+|++|.+++
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 66666666665555556666666666666666666666666666666666666666654
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=7.8e-25 Score=251.79 Aligned_cols=256 Identities=17% Similarity=0.194 Sum_probs=127.7
Q ss_pred EEEccCCcccccCchhhccCCCccEEEccCCcccccCC----CccCCCC-CCcEEEccCCcCccccCccccCc-----cc
Q 001171 367 VLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVP----AFLGGIR-GLKIVSLGRNMFSGLIPLSFGNL-----SQ 436 (1133)
Q Consensus 367 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 436 (1133)
.+++++|.+++.+|..+...++|++|||++|.+++..+ ..+..++ +|++|+|++|.+++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777766666666667777777777765555 4555555 66666666666665555555443 55
Q ss_pred cceeecccccccccCChhhcC----C-CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCC-ccccc
Q 001171 437 LETLNLSENDIRGNIPEEITR----L-SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGS-LMRLT 510 (1133)
Q Consensus 437 L~~L~L~~N~i~~~~~~~l~~----l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~ 510 (1133)
|++|+|++|++++..+..+.. + ++|++|+|++|++++..+..+.. .+.. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCcee
Confidence 666666666665544443322 2 45555555555554333222111 1111 13455
Q ss_pred EEeccccCCCCCCCh----hccCCC-CCcEeeccCCcccccCCCCC----CCC-ccCcEEEcccccccCC----CCcccc
Q 001171 511 TLDLSNQNLSGELPI----ELFGLP-SLQVVSLEENNLSGDVPEGF----SSL-VGLQYLNLSDNAFTGD----IPATYG 576 (1133)
Q Consensus 511 ~L~Ls~N~l~~~~p~----~l~~l~-~L~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~----~~~~~~ 576 (1133)
+|++++|.+++..+. .+..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.+++. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 555555554432222 222333 45555555555544333222 222 3555555555555532 222333
Q ss_pred c-ccccceeecccCccCCCCC----ccccCCCCccEEEecCCcccCCCc-------cccccccccCeeecCCCcccCc
Q 001171 577 F-LRSLVFLSLSHNQISGMIP----AELGACSALEVLELRSNHFTGNIP-------VDISHLSRIKKLDLGQNKLSGE 642 (1133)
Q Consensus 577 ~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~l~~~ 642 (1133)
. .++|++|+|++|++++..+ ..+..+++|++|+|++|.+.+..+ ..+..+++|+.|||++|++.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 2356666666666654333 223445556666666665443222 1233344444444444444433
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1e-24 Score=250.81 Aligned_cols=258 Identities=22% Similarity=0.238 Sum_probs=133.8
Q ss_pred eeecccccccccCChhhcCCCCCcEEecccCcCCCCCC----CCCCCCC-CCcEEEcccCCCccccCCCcCCc-----cc
Q 001171 439 TLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVP----YDVGNLK-GLLVLNLSASGFSGKIPGSIGSL-----MR 508 (1133)
Q Consensus 439 ~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l-----~~ 508 (1133)
++++++|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45777888887777777666778888888888776555 4555565 66777777776666555555443 66
Q ss_pred ccEEeccccCCCCCCChhccC----C-CCCcEeeccCCcccccCCCCC----CC-CccCcEEEcccccccCCCCcccccc
Q 001171 509 LTTLDLSNQNLSGELPIELFG----L-PSLQVVSLEENNLSGDVPEGF----SS-LVGLQYLNLSDNAFTGDIPATYGFL 578 (1133)
Q Consensus 509 L~~L~Ls~N~l~~~~p~~l~~----l-~~L~~L~L~~N~l~~~~~~~~----~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 578 (1133)
|++|++++|.+++..+..+.. + ++|++|+|++|++++..+..+ .. .++|++|+|++|++++.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--- 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL--- 158 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH---
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH---
Confidence 666666666666544443332 2 555555555555554433222 12 1345555555555543222221
Q ss_pred cccceeecccCccCCCCCccccCCC-CccEEEecCCcccCCCccccccc-----cccCeeecCCCcccCc----Cchhhh
Q 001171 579 RSLVFLSLSHNQISGMIPAELGACS-ALEVLELRSNHFTGNIPVDISHL-----SRIKKLDLGQNKLSGE----IPKEIS 648 (1133)
Q Consensus 579 ~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~----~p~~l~ 648 (1133)
+..+..++ +|++|+|++|++++..+..+... ++|+.|+|++|.|++. ++..+.
T Consensus 159 -----------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 159 -----------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp -----------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -----------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 11122222 45555555555544333332222 3555555555555432 223333
Q ss_pred c-cCCCcEEEeecCCCCccCC----ccccCccccccccccccccccc-------CCccccccccCcccccccccccccCC
Q 001171 649 K-CSSLVSLTLDMNSLSGRIP----ESFSKLSNLTTLNLSTNRLSGA-------IPADLALISSLRYLNLSRNNLEGEIP 716 (1133)
Q Consensus 649 ~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l~~~~p 716 (1133)
. .++|+.|+|++|++++..+ ..+..+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++.+..|
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3 2355555555555554333 2234445555555555553321 22234455566666666666654433
No 334
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.1e-22 Score=221.96 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=68.7
Q ss_pred CCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecc
Q 001171 364 KLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLS 443 (1133)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 443 (1133)
++++|+|++|++++..+..|..+++|++|+|++|.|++..+. +.+++|+.|+|++|.++ .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 344444444444433333444444444444444444322111 23333333333333333 223333344444444444
Q ss_pred cccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCC
Q 001171 444 ENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGEL 523 (1133)
Q Consensus 444 ~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 523 (1133)
+|+|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 44444333333444444444444444444333333333444444444444443333333334444444444444443 33
Q ss_pred ChhccCCCCCcEeeccCCc
Q 001171 524 PIELFGLPSLQVVSLEENN 542 (1133)
Q Consensus 524 p~~l~~l~~L~~L~L~~N~ 542 (1133)
|..++.+++|+.|+|++|.
T Consensus 188 p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCCCSEEECCSCC
T ss_pred ChhhcccccCCeEEeCCCC
Confidence 3333333333333333333
No 335
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.89 E-value=1.7e-24 Score=260.29 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=139.6
Q ss_pred CcccccccccceeEEEEEECCceEEEEEEcccCCcC---------HHHHHHHHHHHhhccCCCeeeEEEEEeCCCCcEEE
Q 001171 840 DEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTID---------ENTFRKEAEALGKVKHRNLTVLRGYYAGPPDVRLL 910 (1133)
Q Consensus 840 ~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~---------~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~~l 910 (1133)
...++||+|+||.||+|.. .+..+++|+....... .+.+.+|++++++++||||+++..++...... ++
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~-~l 416 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNK-RI 416 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTT-EE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCcc-EE
Confidence 4467899999999999954 4778888886432211 24578999999999999999555444444344 99
Q ss_pred EEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCCCceEEeccCccccccc
Q 001171 911 VYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIA 990 (1133)
Q Consensus 911 V~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 990 (1133)
||||+++++|.+++.. +..++.|+++||+|||+++|+||||||+|||++. .+||+|||+++....
T Consensus 417 VmE~~~ggsL~~~l~~-------------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 417 MMSYINGKLAKDVIED-------------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp EEECCCSEEHHHHSTT-------------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred EEECCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 9999999999999874 3468999999999999999999999999999998 999999999976532
Q ss_pred CCCCCC----CCCCCCCCCCccCccccCC--CCCCCCCchhHHHHHHHHHHhCCCCC
Q 001171 991 TPAEAS----SSTTPIGSLGYVSPEAAST--GQPTKEADVYSFGIVLLEILTGRKPV 1041 (1133)
Q Consensus 991 ~~~~~~----~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlG~il~el~tg~~Pf 1041 (1133)
...... ......||+.|||||++.. ..|+..+|+|+..+-..+-+.++.+|
T Consensus 482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 111000 1134579999999999976 55788889999999888888877776
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.6e-22 Score=216.40 Aligned_cols=203 Identities=19% Similarity=0.207 Sum_probs=141.1
Q ss_pred CccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCc-CCCCCcccccCccccceEeccc-ccccCCCCccccC
Q 001171 158 KISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNS-FSGEVPASVGQLQELEYLWLDS-NHLYGTLPSAISN 235 (1133)
Q Consensus 158 ~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~ 235 (1133)
.+|. +++++++|+|++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..+.+
T Consensus 25 ~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 25 RIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp SCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred ccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 4566 77789999999999998888889999999999999997 8766666788999999999998 8998666678888
Q ss_pred ccccceeeccccccCCCCCCcccCcCccc---EEEcccC-CccCCcccccccCccccccccc-EEeccCCcccccccCCC
Q 001171 236 CSSLVHLSAEDNVLKGLIPGTIGRISTLQ---VLSLSRN-ELTGLVPVSVLCNLWGNISSLR-IVQLGFNAFTGVVKPPN 310 (1133)
Q Consensus 236 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~~~~~l~~L~-~l~l~~n~l~~~~~~~~ 310 (1133)
+++|++|++++|++++ +|. |..+++|+ +|++++| ++++..+.. |.++++|+ .|++++|.++
T Consensus 104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-----~~~l~~L~~~L~l~~n~l~------- 169 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-----FQGLCNETLTLKLYNNGFT------- 169 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-----TTTTBSSEEEEECCSCCCC-------
T ss_pred CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc-----ccchhcceeEEEcCCCCCc-------
Confidence 9999999999999887 444 77788887 8888888 887543322 25566666 6666655555
Q ss_pred CCccccccEEeccCCcccccCCchhhcccccceeeccCce-eecccCcccCCC-CCCcEEEccCCcccccCchhhccCCC
Q 001171 311 GRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNF-FSGNLPAAVGSL-DKLEVLRVANNSLSGLVPDEIAKCSL 388 (1133)
Q Consensus 311 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~ 388 (1133)
.+++..|.. ++|++|+|++|+ +++..+..|..+ ++|++|++++|++++..+. .+++
T Consensus 170 ------------------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~ 227 (239)
T 2xwt_C 170 ------------------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEH 227 (239)
T ss_dssp ------------------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTT
T ss_pred ------------------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hhcc
Confidence 333333433 455555555553 554444455555 5555555555555543222 3445
Q ss_pred ccEEEccCC
Q 001171 389 LQMFDLEGN 397 (1133)
Q Consensus 389 L~~L~Ls~N 397 (1133)
|+.|+++++
T Consensus 228 L~~L~l~~~ 236 (239)
T 2xwt_C 228 LKELIARNT 236 (239)
T ss_dssp CSEEECTTC
T ss_pred CceeeccCc
Confidence 555555544
No 337
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.9e-24 Score=251.16 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=128.5
Q ss_pred cCCcccccCCchhhcccccceeeccCceeecccC----cccCCCCCCcEEEccCC---cccccCchhh-------ccCCC
Q 001171 323 QNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLP----AAVGSLDKLEVLRVANN---SLSGLVPDEI-------AKCSL 388 (1133)
Q Consensus 323 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~n---~l~~~~~~~~-------~~l~~ 388 (1133)
....+..+ +..+..+++|++|+|++|.|.+..+ ..+..+++|++|+|++| ++++.+|..+ ..+++
T Consensus 17 ~~~~~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 17 TTEDEKSV-FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CSHHHHTT-SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHH-HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 33344444 6778889999999999999986633 44778999999999986 4555556555 67888
Q ss_pred ccEEEccCCcccc----cCCCccCCCCCCcEEEccCCcCccccCccccC----c---------cccceeeccccccc-cc
Q 001171 389 LQMFDLEGNRFSG----QVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGN----L---------SQLETLNLSENDIR-GN 450 (1133)
Q Consensus 389 L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~----l---------~~L~~L~L~~N~i~-~~ 450 (1133)
|++|+|++|.+++ .+|..+..+++|+.|+|++|.+++..+..+.. + ++|++|++++|+++ ..
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 8888888888876 46667777888888888888886544443333 2 67777777777775 22
Q ss_pred CC---hhhcCCCCCcEEecccCcCCC-----CCCCCCCCCCCCcEEEcccCCCc----cccCCCcCCcccccEEeccccC
Q 001171 451 IP---EEITRLSNLTTLNLSYNKFGG-----KVPYDVGNLKGLLVLNLSASGFS----GKIPGSIGSLMRLTTLDLSNQN 518 (1133)
Q Consensus 451 ~~---~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~ 518 (1133)
++ ..+..+++|++|+|++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++|+|++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 33 345566667777777766651 22334555555555555555553 3344444555555555555555
Q ss_pred CC
Q 001171 519 LS 520 (1133)
Q Consensus 519 l~ 520 (1133)
++
T Consensus 256 i~ 257 (386)
T 2ca6_A 256 LS 257 (386)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 338
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.7e-23 Score=251.11 Aligned_cols=206 Identities=26% Similarity=0.394 Sum_probs=148.4
Q ss_pred CccCCCCCCCCCCC-----cccee-eeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCc
Q 001171 48 ALDGWDSSTPSAPC-----DWRGI-VCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLL 121 (1133)
Q Consensus 48 ~l~~w~~~~~~~~c-----~w~gv-~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 121 (1133)
.+.+|..+ .++| .|.|+ .|..++++.|+|.++++++ +|+.+. ++|++|+|++|+|+ .+| ..+++|
T Consensus 32 ~l~~W~~~--~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 32 AWDKWEKQ--ALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHHTT--CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHHhcc--CCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCC
Confidence 45678543 3578 79999 7987788888888888887 776653 77888888888888 677 457888
Q ss_pred ceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcC
Q 001171 122 RAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSF 201 (1133)
Q Consensus 122 ~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l 201 (1133)
+.|+|++|+|++ +|. +.+ +|++|+|++|.|++ +|. ..++|++|+|++|.|++ +|. .+++|++|+|++|+|
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 888888888886 777 655 77778888888776 555 56777788888877776 554 456777777777777
Q ss_pred CCCCcccccCccccceEecccccccCCCCccccCcccc-------ceeeccccccCCCCCCcccCcCcccEEEcccCCcc
Q 001171 202 SGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSL-------VHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELT 274 (1133)
Q Consensus 202 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-------~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 274 (1133)
++ +|. +. ++|++|+|++|+|+ .+|. +.. +| ++|+|++|+|+. +|..+..+++|+.|+|++|+++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCC
Confidence 76 666 55 77777777777776 5666 543 56 777777777774 4555666777777777777777
Q ss_pred CCccccc
Q 001171 275 GLVPVSV 281 (1133)
Q Consensus 275 ~~~p~~~ 281 (1133)
+.+|..+
T Consensus 244 ~~~p~~l 250 (571)
T 3cvr_A 244 SRIRESL 250 (571)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 6665544
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.3e-25 Score=253.81 Aligned_cols=240 Identities=23% Similarity=0.299 Sum_probs=116.6
Q ss_pred ChhhcCCCCCcEEecccCcCCCCCC----CCCCCCCCCcEEEcccC---CCccccCCCc-------CCcccccEEecccc
Q 001171 452 PEEITRLSNLTTLNLSYNKFGGKVP----YDVGNLKGLLVLNLSAS---GFSGKIPGSI-------GSLMRLTTLDLSNQ 517 (1133)
Q Consensus 452 ~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N---~l~~~~~~~~-------~~l~~L~~L~Ls~N 517 (1133)
+..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3444444445555555554443211 22334444555555443 2233333332 45566666666666
Q ss_pred CCCC----CCChhccCCCCCcEeeccCCcccccCCCCCC----CC---------ccCcEEEccccccc-CCCC---cccc
Q 001171 518 NLSG----ELPIELFGLPSLQVVSLEENNLSGDVPEGFS----SL---------VGLQYLNLSDNAFT-GDIP---ATYG 576 (1133)
Q Consensus 518 ~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~~L~Ls~N~l~-~~~~---~~~~ 576 (1133)
.+++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|+|++|+++ +.++ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6664 2445555666666666666666533222222 22 55666666666554 2222 2344
Q ss_pred cccccceeecccCccCC-----CCCccccCCCCccEEEecCCccc----CCCccccccccccCeeecCCCcccCc----C
Q 001171 577 FLRSLVFLSLSHNQISG-----MIPAELGACSALEVLELRSNHFT----GNIPVDISHLSRIKKLDLGQNKLSGE----I 643 (1133)
Q Consensus 577 ~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~ 643 (1133)
.+++|++|+|++|+|+. ..|..+..+++|++|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 45555555555555542 12224455555555555555553 33444455555555555555555543 2
Q ss_pred chhhhc--cCCCcEEEeecCCCCc----cCCccc-cCcccccccccccccccccC
Q 001171 644 PKEISK--CSSLVSLTLDMNSLSG----RIPESF-SKLSNLTTLNLSTNRLSGAI 691 (1133)
Q Consensus 644 p~~l~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 691 (1133)
|..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 333322 4555555555555554 244443 33455555555555554433
No 340
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.7e-22 Score=212.26 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=55.3
Q ss_pred ccceeeccCceeecccCcccCCCCCCcEEEccCCc-ccccCchhhccCCCccEEEccC-CcccccCCCccCCCCCCcEEE
Q 001171 340 SLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNS-LSGLVPDEIAKCSLLQMFDLEG-NRFSGQVPAFLGGIRGLKIVS 417 (1133)
Q Consensus 340 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 417 (1133)
+|++|+|++|+|++..+..|.++++|++|++++|+ ++.+.+..|.++++|++|+|++ |++++..+..|.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444443333344444444444444443 4433333444444444444444 444433333444444444444
Q ss_pred ccCCcCccccCccccCccccc---eeecccc-cccccCChhhcCCCCCc-EEecccCcCC
Q 001171 418 LGRNMFSGLIPLSFGNLSQLE---TLNLSEN-DIRGNIPEEITRLSNLT-TLNLSYNKFG 472 (1133)
Q Consensus 418 L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~i~~~~~~~l~~l~~L~-~L~Ls~N~l~ 472 (1133)
+++|.+++ +|. |..+++|+ +|++++| ++++..+..|..+++|+ +|++++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 44444443 222 33333333 4444444 44433333344444444 4444444443
No 341
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.8e-23 Score=238.10 Aligned_cols=255 Identities=21% Similarity=0.255 Sum_probs=161.7
Q ss_pred cccEEeccCCcccccCCchhhcc--cccceeeccCceeecccCcccCCCCCCcEEEccCCccccc-CchhhccCCCccEE
Q 001171 316 VLEVLDLQNNRIRAVFPSWLTNV--TSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGL-VPDEIAKCSLLQMF 392 (1133)
Q Consensus 316 ~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 392 (1133)
.++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777766 4667777 8888888888888866555 55688888888888888765 67778888888888
Q ss_pred EccCCcccccCCCccCCCCCCcEEEccCC-cCccc-cCccccCccccceeecccc-ccccc-CChhhcCCC-CCcEEecc
Q 001171 393 DLEGNRFSGQVPAFLGGIRGLKIVSLGRN-MFSGL-IPLSFGNLSQLETLNLSEN-DIRGN-IPEEITRLS-NLTTLNLS 467 (1133)
Q Consensus 393 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~i~~~-~~~~l~~l~-~L~~L~Ls 467 (1133)
+|++|.+++..+..++.+++|++|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888887777777777888888888888 56652 4555677777888888877 77654 455566777 77777777
Q ss_pred cC--cCC-CCCCCCCCCCCCCcEEEcccCC-CccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcc
Q 001171 468 YN--KFG-GKVPYDVGNLKGLLVLNLSASG-FSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNL 543 (1133)
Q Consensus 468 ~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 543 (1133)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. .+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-----------------------~~ 260 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-----------------------DI 260 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-----------------------TC
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-----------------------CC
Confidence 77 333 2233333444555555555554 343344444444444444444442 12
Q ss_pred cccCCCCCCCCccCcEEEcccccccCCCCcccccc-cccceeecccCccCCCCCccccC
Q 001171 544 SGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFL-RSLVFLSLSHNQISGMIPAELGA 601 (1133)
Q Consensus 544 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~ 601 (1133)
.......+.++++|++|++++| ++. ..+..+ .+|..|++++|++++..|..++.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 1111123445556666666655 221 123333 23566666777777666665543
No 342
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=224.75 Aligned_cols=202 Identities=20% Similarity=0.205 Sum_probs=146.7
Q ss_pred cccccceeeccCceeecccCccc--CCCCCCcEEEccCCcccccCc----hhhccCCCccEEEccCCcccccCCCccCCC
Q 001171 337 NVTSLRVMDLSGNFFSGNLPAAV--GSLDKLEVLRVANNSLSGLVP----DEIAKCSLLQMFDLEGNRFSGQVPAFLGGI 410 (1133)
Q Consensus 337 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 410 (1133)
.+++|++|+|++|.+.+..|..+ ..+++|++|+|++|++++..+ ..+..+++|++|+|++|++++..|..|+++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45678889999998888888877 888899999999998887544 344578899999999999988888888899
Q ss_pred CCCcEEEccCCcCccc---c-CccccCccccceeecccccccccCCh----hhcCCCCCcEEecccCcCCCCCCCCCCCC
Q 001171 411 RGLKIVSLGRNMFSGL---I-PLSFGNLSQLETLNLSENDIRGNIPE----EITRLSNLTTLNLSYNKFGGKVPYDVGNL 482 (1133)
Q Consensus 411 ~~L~~L~L~~N~l~~~---~-p~~~~~l~~L~~L~L~~N~i~~~~~~----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 482 (1133)
++|++|+|++|++.+. . +..+..+++|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999987652 2 2334678899999999998873 232 24677888889988888887777766665
Q ss_pred ---CCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCccc
Q 001171 483 ---KGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLS 544 (1133)
Q Consensus 483 ---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 544 (1133)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|+|++|+++
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 47777777777776 4455443 5666666666666532 22 344455555555555554
No 343
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=226.10 Aligned_cols=203 Identities=21% Similarity=0.213 Sum_probs=95.9
Q ss_pred CCCcEEecccCcCCCCCCCCC--CCCCCCcEEEcccCCCccccC----CCcCCcccccEEeccccCCCCCCChhccCCCC
Q 001171 459 SNLTTLNLSYNKFGGKVPYDV--GNLKGLLVLNLSASGFSGKIP----GSIGSLMRLTTLDLSNQNLSGELPIELFGLPS 532 (1133)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 532 (1133)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445566666665555555554 555555555555555544322 12234455555555555555444444555555
Q ss_pred CcEeeccCCccccc----CCCCCCCCccCcEEEcccccccCCCCc----ccccccccceeecccCccCCCCCccccCCCC
Q 001171 533 LQVVSLEENNLSGD----VPEGFSSLVGLQYLNLSDNAFTGDIPA----TYGFLRSLVFLSLSHNQISGMIPAELGACSA 604 (1133)
Q Consensus 533 L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 604 (1133)
|++|+|++|++.+. .+..+..+++|++|+|++|+++. ++. .++.+++|++|+|++|++++..|..+..+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~- 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM- 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC-
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc-
Confidence 55555555544321 11222344445555555554431 111 123344444444444444444343333331
Q ss_pred ccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCccccccccccc
Q 001171 605 LEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLST 684 (1133)
Q Consensus 605 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 684 (1133)
.+++|++|+|++|+|+ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|+|++
T Consensus 249 --------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 249 --------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp --------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred --------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 0135555555555555 3444442 4555555555555532 22 44555666666666
Q ss_pred cccc
Q 001171 685 NRLS 688 (1133)
Q Consensus 685 N~l~ 688 (1133)
|+++
T Consensus 304 N~l~ 307 (310)
T 4glp_A 304 NPFL 307 (310)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 6654
No 344
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.5e-23 Score=238.87 Aligned_cols=252 Identities=17% Similarity=0.204 Sum_probs=142.5
Q ss_pred cceeecccccccccCChhhcCC--CCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccc-cCCCcCCcccccEEe
Q 001171 437 LETLNLSENDIRGNIPEEITRL--SNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGK-IPGSIGSLMRLTTLD 513 (1133)
Q Consensus 437 L~~L~L~~N~i~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 513 (1133)
++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 444555555443 2334444 5555666666655543332 33344455555554444433 333444444455555
Q ss_pred ccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccc-cccCC-CCcccccccccceeecccC-c
Q 001171 514 LSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDN-AFTGD-IPATYGFLRSLVFLSLSHN-Q 590 (1133)
Q Consensus 514 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~ 590 (1133)
+++|.+++..+..+.. +++|++|+|++| .+++. ++..+..+++|++|++++| .
T Consensus 125 L~~~~l~~~~~~~l~~------------------------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAK------------------------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCHHHHHHHTT------------------------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCHHHHHHHhc------------------------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 5544444334444444 444444444444 34331 3444555566666666666 6
Q ss_pred cCCC-CCccccCCC-CccEEEecCC--ccc-CCCccccccccccCeeecCCCc-ccCcCchhhhccCCCcEEEeecCC-C
Q 001171 591 ISGM-IPAELGACS-ALEVLELRSN--HFT-GNIPVDISHLSRIKKLDLGQNK-LSGEIPKEISKCSSLVSLTLDMNS-L 663 (1133)
Q Consensus 591 l~~~-~p~~l~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l 663 (1133)
+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|+|++|. +++..+..+..+++|+.|++++|. +
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 5543 345556666 7777777776 343 3355556667777777777777 666667777777778888887774 3
Q ss_pred CccCCccccCcccccccccccccccccCCcccccc-ccCcccccccccccccCCcccc
Q 001171 664 SGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALI-SSLRYLNLSRNNLEGEIPKMLS 720 (1133)
Q Consensus 664 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~~ 720 (1133)
+......++++++|+.|++++| ++. ..+..+ ..++.|++++|++++..|...+
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 3333335677788888888877 332 233444 3477778888888888876544
No 345
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.3e-21 Score=209.30 Aligned_cols=178 Identities=22% Similarity=0.260 Sum_probs=101.8
Q ss_pred cccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEcc
Q 001171 316 VLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLE 395 (1133)
Q Consensus 316 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (1133)
..++++++++.++.+++. +. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 455666666666665332 22 456666666666666555566666666666666666666555556666666666666
Q ss_pred CCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCC
Q 001171 396 GNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKV 475 (1133)
Q Consensus 396 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 475 (1133)
+|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 66666555555555555555555555555554445555555555555555555444445555555555555555555444
Q ss_pred CCCCCCCCCCcEEEcccCCCc
Q 001171 476 PYDVGNLKGLLVLNLSASGFS 496 (1133)
Q Consensus 476 ~~~~~~l~~L~~L~L~~N~l~ 496 (1133)
+..+..+++|+.|++++|.++
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 444444555555555555444
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.4e-21 Score=223.43 Aligned_cols=240 Identities=18% Similarity=0.133 Sum_probs=148.8
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcc-cccCccccce-Eecccccc
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPA-SVGQLQELEY-LWLDSNHL 225 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~-L~L~~N~l 225 (1133)
+++++|+++ .+|.++|+++++|+|++|+|+...++.|.++++|++|+|++|++.+.+|. .|.++++|++ +.+++|++
T Consensus 14 v~C~~~~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 344444444 56677788899999999999976667899999999999999999877764 5778888765 56677888
Q ss_pred cCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEccc-CCccCCcccccccCcccccccccEEeccCCcccc
Q 001171 226 YGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSR-NELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTG 304 (1133)
Q Consensus 226 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~ 304 (1133)
++..|..|.++++|++|++++|+++...+..+....++..|++++ |+++...+..+ ..+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f-----~~~~-------------- 153 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF-----VGLS-------------- 153 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS-----TTSB--------------
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch-----hhcc--------------
Confidence 877778888889999999999998887777777777888888865 45553222111 2221
Q ss_pred cccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccC-ceeecccCcccCCCCCCcEEEccCCcccccCchhh
Q 001171 305 VVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSG-NFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEI 383 (1133)
Q Consensus 305 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 383 (1133)
..+++|+|++|+|+.+.+..|. ..+|++|++++ |.++.+.++.|..+++|++|+|++|+|+.+.+..+
T Consensus 154 ----------~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 154 ----------FESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ----------SSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ----------hhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 2244455555555555444332 33455555543 44443333345555555555555555554433333
Q ss_pred ccCCCccEEEccCCcccccCCCccCCCCCCcEEEccCCc
Q 001171 384 AKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNM 422 (1133)
Q Consensus 384 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 422 (1133)
.++++|+.+++ +.++ .+| .+.++++|+.+++.++.
T Consensus 223 ~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 223 ENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred ccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCCc
Confidence 33333222222 1222 334 25556666666665443
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2e-21 Score=217.62 Aligned_cols=193 Identities=27% Similarity=0.419 Sum_probs=100.9
Q ss_pred CCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEE
Q 001171 481 NLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYL 560 (1133)
Q Consensus 481 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 560 (1133)
++++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l----------------- 97 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL----------------- 97 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-----------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC-----------------
Confidence 44555555555555543 22 34555555555555555543222 44455555555555544
Q ss_pred EcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCccc
Q 001171 561 NLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLS 640 (1133)
Q Consensus 561 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 640 (1133)
++. ..+..+++|++|++++|++++. +. +..+++|++|++++|++++ ++. +..+++|+.|+|++|.++
T Consensus 98 -------~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 98 -------KNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp -------SCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred -------CCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC
Confidence 431 1344455555555555555532 21 4555555555555555553 222 555555666666666555
Q ss_pred CcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCcccccccccccc
Q 001171 641 GEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEG 713 (1133)
Q Consensus 641 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 713 (1133)
+ ++. +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 165 ~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 D-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp C-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred C-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3 222 5556666666666666654322 5556666666666666654332 5566666666666666654
No 348
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.6e-21 Score=216.78 Aligned_cols=194 Identities=24% Similarity=0.415 Sum_probs=97.7
Q ss_pred hhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCc
Q 001171 335 LTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLK 414 (1133)
Q Consensus 335 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 414 (1133)
+..+++|++|++++|.+.. +| .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4455566666666666653 23 35555666666666666554433 55555566666666555532 1344455555
Q ss_pred EEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCC
Q 001171 415 IVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASG 494 (1133)
Q Consensus 415 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 494 (1133)
.|++++|.+++.. .+..+++|++|++++|++++..+ +..+++|++|+|++|++++.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-------------------- 166 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-------------------- 166 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------------
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC--------------------
Confidence 5555555554421 14445555555555555543222 44444455555544444432
Q ss_pred CccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEccccccc
Q 001171 495 FSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFT 568 (1133)
Q Consensus 495 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 568 (1133)
.+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|+|++|.++
T Consensus 167 ----~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 167 ----TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ----GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred ----hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 22 3444444444444444443221 4455555555555555554332 555566666666666665
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.3e-20 Score=215.44 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=66.2
Q ss_pred cEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccC-chhhccCCCccE-EEcc
Q 001171 318 EVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLV-PDEIAKCSLLQM-FDLE 395 (1133)
Q Consensus 318 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~Ls 395 (1133)
++++.++++++.| |..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +..|.+++++.+ ++++
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3445555555554 2222 234555555555555333344555555555555555543322 233444444332 3333
Q ss_pred CCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeeccc-ccccccCChhhcCCC-CCcEEecccCcCC
Q 001171 396 GNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSE-NDIRGNIPEEITRLS-NLTTLNLSYNKFG 472 (1133)
Q Consensus 396 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~i~~~~~~~l~~l~-~L~~L~Ls~N~l~ 472 (1133)
+|+++...|..|.++++|++|++++|.++...+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 4444444444444444444444444444444333344444444444432 333333333333322 2444444444444
No 350
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.84 E-value=9.4e-22 Score=216.55 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=118.2
Q ss_pred HHHhcCCCcccccccccceeEEEEEECCceEEEEEEcccCCc-------------------CHHHHHHHHHHHhhccCCC
Q 001171 833 LEATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI-------------------DENTFRKEAEALGKVKHRN 893 (1133)
Q Consensus 833 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~-------------------~~~~~~~E~~~l~~l~hpn 893 (1133)
......|.+.+.||+|+||.||+|.+.+|+.||+|.++.+.. ....+.+|++++++++|
T Consensus 86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~-- 163 (282)
T 1zar_A 86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG-- 163 (282)
T ss_dssp HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT--
T ss_pred HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC--
Confidence 344556778899999999999999887799999999964321 23468899999999994
Q ss_pred eeeEEEEEeCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCC
Q 001171 894 LTVLRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDA 973 (1133)
Q Consensus 894 iv~l~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~ 973 (1133)
+++.+++.. +..++||||+++|+|.+ +. ......++.||++|++|||+.||+||||||+||+++
T Consensus 164 -~~v~~~~~~--~~~~lvmE~~~g~~L~~-l~-----------~~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~- 227 (282)
T 1zar_A 164 -LAVPKVYAW--EGNAVLMELIDAKELYR-VR-----------VENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS- 227 (282)
T ss_dssp -SSSCCEEEE--ETTEEEEECCCCEEGGG-CC-----------CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-
T ss_pred -CCcCeEEec--cceEEEEEecCCCcHHH-cc-----------hhhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-
Confidence 555555543 23489999999999987 32 123446999999999999999999999999999999
Q ss_pred CCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccC
Q 001171 974 DFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAAS 1014 (1133)
Q Consensus 974 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 1014 (1133)
++.+||+|||+|+. +..|+|||++.
T Consensus 228 ~~~vkl~DFG~a~~----------------~~~~~a~e~l~ 252 (282)
T 1zar_A 228 EEGIWIIDFPQSVE----------------VGEEGWREILE 252 (282)
T ss_dssp TTEEEECCCTTCEE----------------TTSTTHHHHHH
T ss_pred CCcEEEEECCCCeE----------------CCCCCHHHHHH
Confidence 99999999999852 23578899874
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.9e-20 Score=193.90 Aligned_cols=180 Identities=21% Similarity=0.235 Sum_probs=106.1
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccC
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEG 396 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 396 (1133)
-+.++++++.++.++... .++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 9 ~~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 345666666666653322 34666677777776655555566666666666666666655555566666666666666
Q ss_pred CcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCC
Q 001171 397 NRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVP 476 (1133)
Q Consensus 397 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 476 (1133)
|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 66665555555666666666666666665555555666666666666666665444445556666666666665442
Q ss_pred CCCCCCCCCcEEEcccCCCccccCCCcCCc
Q 001171 477 YDVGNLKGLLVLNLSASGFSGKIPGSIGSL 506 (1133)
Q Consensus 477 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 506 (1133)
.+++|+.|+++.|+++|.+|..++.+
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccc
Confidence 23345555555555555555554444
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=7.5e-20 Score=192.47 Aligned_cols=176 Identities=23% Similarity=0.256 Sum_probs=80.6
Q ss_pred EEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCc
Q 001171 511 TLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQ 590 (1133)
Q Consensus 511 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 590 (1133)
.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4445555444 233222 2345555555555554444444555555555555555554433444445555555555555
Q ss_pred cCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCcc
Q 001171 591 ISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPES 670 (1133)
Q Consensus 591 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~ 670 (1133)
+++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 544333334445555555555555543333334444444444444444443333334444444444444444332
Q ss_pred ccCcccccccccccccccccCCcccc
Q 001171 671 FSKLSNLTTLNLSTNRLSGAIPADLA 696 (1133)
Q Consensus 671 ~~~l~~L~~L~Ls~N~l~~~~p~~l~ 696 (1133)
.+++|++|+++.|+++|.+|..++
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred --CCCCHHHHHHHHHhCCceeeccCc
Confidence 123344444444444444444433
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.3e-20 Score=221.70 Aligned_cols=194 Identities=27% Similarity=0.405 Sum_probs=98.4
Q ss_pred CCcEEecccCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeecc
Q 001171 460 NLTTLNLSYNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLE 539 (1133)
Q Consensus 460 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 539 (1133)
+|+.|+|++|.+++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|++++|+|++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 77888888888775 554442 56777777777666 344 335566666666666664 444 333 55555555
Q ss_pred CCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCC
Q 001171 540 ENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNI 619 (1133)
Q Consensus 540 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 619 (1133)
+|+|++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|++|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 555554 332 34455555555555543 332 33445555555555443 333 32 44444444444444 23
Q ss_pred ccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCcccccc
Q 001171 620 PVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALI 698 (1133)
Q Consensus 620 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 698 (1133)
|. +.. +| ......|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 196 p~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 221 23 000011155555555555 345545555555555555555555555555444
No 354
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=3.2e-21 Score=233.02 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=150.1
Q ss_pred hcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCc-------------ccCcCCCccccccchhhhh-hcccccC
Q 001171 91 LADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNS-------------FSGHLPLSIFNLTNLLVLN-VAHNLLS 156 (1133)
Q Consensus 91 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------~~g~~p~~l~~l~~L~~L~-l~~N~l~ 156 (1133)
++..++|+.|+|++|+|. .+|..+++|++|+.|++++|. +.|.+|..++++++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 467899999999999997 899999999999999998886 6778888999999999998 6666543
Q ss_pred CC---------ccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccC
Q 001171 157 GK---------ISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYG 227 (1133)
Q Consensus 157 ~~---------~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 227 (1133)
.. +..-.+..|++|+|++|.|++ +|. |+.+++|++|+|++|+|+ .+|..++.+++|++|+|++|++++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 10 101112357788888888876 565 788888888888888888 678788888888888888888875
Q ss_pred CCCccccCccccceeeccccccCCCC-CCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEe
Q 001171 228 TLPSAISNCSSLVHLSAEDNVLKGLI-PGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQ 296 (1133)
Q Consensus 228 ~~p~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~ 296 (1133)
+| .++++++|++|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|... ..+..+++|+.|+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~--~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE--RLAEMLPSVSSIL 566 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT--HHHHHCTTCSEEE
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH--HHHHHCcccCccC
Confidence 66 7788888888888888888776 7788888888888888888876655321 1123355555554
No 355
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.1e-20 Score=235.80 Aligned_cols=233 Identities=20% Similarity=0.189 Sum_probs=129.7
Q ss_pred cCchhHHHHHHHHHHhCCCC-CCCccCCCCCCCCCCCccceeeeCCCceEEEeeCCcccCcccchhhcccccCc-----E
Q 001171 26 AVVLSEIQALTSFKLHLKDP-LGALDGWDSSTPSAPCDWRGIVCYNNRVRELRLPRLQLAGRLTDQLADLHELR-----K 99 (1133)
Q Consensus 26 ~~~~~~~~~l~~~k~~~~~~-~~~l~~w~~~~~~~~c~w~gv~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~-----~ 99 (1133)
.....++++|+++..+...+ ...-.+|... +..++.|.+++++..+|+.++|..+++.+. +..+.....|. .
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGD-STPSGTATNSAVSTPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCC-CCccccCCCceecCCccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence 34567899999999887322 2233567433 335679999999999999999988877763 33332222222 2
Q ss_pred EEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccC--CcceEEEccCCcC
Q 001171 100 LSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADIS--PSLRYLDLSSNAF 177 (1133)
Q Consensus 100 L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~l~~L~Ls~N~~ 177 (1133)
++++.|++. ..|..+..++.|+.|+|++|.++ .+|..++++++|++|+|++|.|+ .+|..+. ++|++|+|++|.|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 333334444 44777899999999999999998 89999999999999999999998 6776664 7899999999999
Q ss_pred CCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCcc-ccceeeccccccCCCCCCc
Q 001171 178 TGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCS-SLVHLSAEDNVLKGLIPGT 256 (1133)
Q Consensus 178 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~~~~ 256 (1133)
+ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|++.+|..+..+. .+..|+|++|.+++.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~- 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH- 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-
Confidence 8 77888999999999999999887 6788899999999999999999888888776553 334578889998887775
Q ss_pred ccCcCcccEEEcccC
Q 001171 257 IGRISTLQVLSLSRN 271 (1133)
Q Consensus 257 ~~~l~~L~~L~Ls~N 271 (1133)
.|+.|+++.|
T Consensus 360 -----~l~~l~l~~n 369 (727)
T 4b8c_D 360 -----ERRFIEINTD 369 (727)
T ss_dssp -----C---------
T ss_pred -----ccceeEeecc
Confidence 4556667766
No 356
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=8.2e-19 Score=187.22 Aligned_cols=158 Identities=25% Similarity=0.362 Sum_probs=95.3
Q ss_pred CCCccceeeeCCCceEEEeeCCcccCcccchhhcccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCc
Q 001171 59 APCDWRGIVCYNNRVRELRLPRLQLAGRLTDQLADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLS 138 (1133)
Q Consensus 59 ~~c~w~gv~c~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~ 138 (1133)
+.|.|.+|.|++.++ +.+|..+. ++|++|+|++|++++..|..+..+++|+.|+|++|+++
T Consensus 17 ~~Cs~~~v~c~~~~l-----------~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~------ 77 (229)
T 3e6j_A 17 CSCSGTTVDCRSKRH-----------ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG------ 77 (229)
T ss_dssp CEEETTEEECTTSCC-----------SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------
T ss_pred CEEeCCEeEccCCCc-----------CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC------
Confidence 679999999986442 12222221 45555555555555544545555555555555555443
Q ss_pred cccccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceE
Q 001171 139 IFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYL 218 (1133)
Q Consensus 139 l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L 218 (1133)
+..+..|..+++|++|+|++|+|++..+..+..+++|++|
T Consensus 78 ----------------------------------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 78 ----------------------------------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp ----------------------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ----------------------------------------CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 2333444555556666666666665444445566666666
Q ss_pred ecccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCC
Q 001171 219 WLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGL 276 (1133)
Q Consensus 219 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 276 (1133)
+|++|+++ .+|..+.++++|++|++++|+|+++.+..|..+++|+.|+|++|.+...
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 66666665 5566666666667777777777666666677777777778877777643
No 357
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=192.11 Aligned_cols=158 Identities=21% Similarity=0.223 Sum_probs=112.5
Q ss_pred cEEEcccccccCCCCcccccccccceeecccCccCCCCC-ccccCCCCccEEEecCCcccCCCccccccccccCeeecCC
Q 001171 558 QYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIP-AELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQ 636 (1133)
Q Consensus 558 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 636 (1133)
+.+++++|.++. +|..+ .+.+++|+|++|+|++..+ ..|..+++|++|+|++|+|++..+..+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 44433 2345667777777665533 3466677777777777777765555677777777777777
Q ss_pred CcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCcccccccccccccCC
Q 001171 637 NKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIP 716 (1133)
Q Consensus 637 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 716 (1133)
|+|++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|+|+|.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666667777888888888888887777778888888888888888887777778888888888888888887776
Q ss_pred cc
Q 001171 717 KM 718 (1133)
Q Consensus 717 ~~ 718 (1133)
..
T Consensus 171 l~ 172 (220)
T 2v70_A 171 LA 172 (220)
T ss_dssp GH
T ss_pred hH
Confidence 43
No 358
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3.8e-19 Score=197.23 Aligned_cols=192 Identities=20% Similarity=0.320 Sum_probs=99.5
Q ss_pred cccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEec
Q 001171 141 NLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWL 220 (1133)
Q Consensus 141 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L 220 (1133)
++.++..+++..+.+++.++..-.++|++|++++|.++.. | .+..+++|++|++++|++++..| +..+++|++|++
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 3455556666666665443333345566666666666543 2 35566666666666666664333 556666666666
Q ss_pred ccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCC
Q 001171 221 DSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFN 300 (1133)
Q Consensus 221 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 300 (1133)
++|++++ +| .+.++++|++|++++|+++++ ..+..+++|++|+|++|+++
T Consensus 98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-------------------------- 147 (291)
T 1h6t_A 98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-------------------------- 147 (291)
T ss_dssp CSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC--------------------------
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC--------------------------
Confidence 6665543 22 244444444444444444432 22333333333333333333
Q ss_pred cccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCc
Q 001171 301 AFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVP 380 (1133)
Q Consensus 301 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 380 (1133)
++ ..+..+++|++|+|++|+|++..| +..+++|++|+|++|++++. +
T Consensus 148 ----------------------------~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~ 194 (291)
T 1h6t_A 148 ----------------------------DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R 194 (291)
T ss_dssp ----------------------------CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G
T ss_pred ----------------------------cc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h
Confidence 22 234555555666666665554333 55556666666666665543 2
Q ss_pred hhhccCCCccEEEccCCccc
Q 001171 381 DEIAKCSLLQMFDLEGNRFS 400 (1133)
Q Consensus 381 ~~~~~l~~L~~L~Ls~N~l~ 400 (1133)
.+..+++|+.|++++|+++
T Consensus 195 -~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -GGTTCTTCSEEEEEEEEEE
T ss_pred -hhccCCCCCEEECcCCccc
Confidence 2555566666666666555
No 359
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=4.9e-19 Score=203.07 Aligned_cols=177 Identities=23% Similarity=0.252 Sum_probs=132.2
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCC-CCCcCcEEeccCCcCCCCCcccccCccccceEeccccccc
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFS-SKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLY 226 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 226 (1133)
+++++|.|+ .+|..+++.+++|+|++|+|++..+..|. .+++|++|+|++|+|++..|..|..+++|++|+|++|+++
T Consensus 23 l~c~~~~l~-~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 23 LSCSKQQLP-NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EECCSSCCS-SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcC-ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 444444444 35666777889999999999988888887 8999999999999999877778999999999999999998
Q ss_pred CCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCCcccccc
Q 001171 227 GTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFNAFTGVV 306 (1133)
Q Consensus 227 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 306 (1133)
+..+..|.++++|++|+|++|+|+++.|..|..+++|+.|+|++|+|++. |...+ ..
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~----~~------------------ 158 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF-PVELI----KD------------------ 158 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CGGGT----C-------------------
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee-CHHHh----cC------------------
Confidence 77777788899999999999999988888898999999999999988753 33221 00
Q ss_pred cCCCCCccccccEEeccCCcccccCCchhhccccc--ceeeccCceee
Q 001171 307 KPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSL--RVMDLSGNFFS 352 (1133)
Q Consensus 307 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~Ls~N~l~ 352 (1133)
...+.+|++|+|++|+|+.+++..|..++.+ +.|+|++|.+.
T Consensus 159 ----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 159 ----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ----cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 0123345555566666666655666666653 66666666665
No 360
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=8e-19 Score=213.22 Aligned_cols=188 Identities=24% Similarity=0.310 Sum_probs=107.2
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccC
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEG 396 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 396 (1133)
+..+.+..+.+..+.+ +..+++|+.|++++|.|.. ++ .+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4444555555555433 5667777777777777763 23 46677777777777777776544 66777777777777
Q ss_pred CcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCC
Q 001171 397 NRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVP 476 (1133)
Q Consensus 397 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 476 (1133)
|+|++ +| .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.+++..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 77764 22 455666666666666666542 2355556666666666666543 445555555555555555554433
Q ss_pred CCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCC
Q 001171 477 YDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLS 520 (1133)
Q Consensus 477 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 520 (1133)
+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44444455555544444432 12444444444444444443
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4e-19 Score=188.29 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=84.5
Q ss_pred EEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCc
Q 001171 559 YLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNK 638 (1133)
Q Consensus 559 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 638 (1133)
.+++++|.++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444444 2333221 345555555555554444455555555555555555554445555555555555555555
Q ss_pred ccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCcccccccccccccCC
Q 001171 639 LSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIP 716 (1133)
Q Consensus 639 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 716 (1133)
|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+|.+.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 553333344556666666666666665555566666666666666666665555555666666666666666665544
No 362
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=6.9e-19 Score=195.16 Aligned_cols=185 Identities=25% Similarity=0.305 Sum_probs=93.9
Q ss_pred EeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcc
Q 001171 320 LDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRF 399 (1133)
Q Consensus 320 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 399 (1133)
+.+..+.++.+ ..+..+++|++|++++|.+... + .+..+++|++|+|++|++++..+ +.++++|++|+|++|++
T Consensus 29 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 33444444433 2234556666666666666532 2 35556666666666666655433 55566666666666665
Q ss_pred cccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCC
Q 001171 400 SGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDV 479 (1133)
Q Consensus 400 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 479 (1133)
++. | .+..+++|+.|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|+|++|++++..+ +
T Consensus 103 ~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC-h-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 531 2 255555555555555555542 2345555555555555555533 345555555555555555554332 4
Q ss_pred CCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCC
Q 001171 480 GNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLS 520 (1133)
Q Consensus 480 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 520 (1133)
..+++|+.|++++|.+++. + .+..+++|+.|++++|.++
T Consensus 175 ~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 4444444444444444432 1 2444444444444444443
No 363
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.4e-18 Score=210.99 Aligned_cols=193 Identities=20% Similarity=0.311 Sum_probs=129.2
Q ss_pred cccchhhhhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEec
Q 001171 141 NLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWL 220 (1133)
Q Consensus 141 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L 220 (1133)
++.++..++++.+.++..++..-.++|++|+|++|.++.. | .|..+++|+.|+|++|++++..| +..+++|++|+|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 4556666777777766555544456778888888888753 3 57788888888888888886544 788888888888
Q ss_pred ccccccCCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcccccccCcccccccccEEeccCC
Q 001171 221 DSNHLYGTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVPVSVLCNLWGNISSLRIVQLGFN 300 (1133)
Q Consensus 221 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 300 (1133)
++|++++ +| .+.++++|++|+|++|+++++ ..+..+++|+.|+|++|+|++. + . +..+++|+.|+|++|
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~-~-----l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T-V-----LSRLTKLDTLSLEDN 163 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-G-----GGSCTTCSEEECCSS
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-h-h-----hcccCCCCEEECcCC
Confidence 8888874 33 677788888888888888764 3577788888888888887754 1 1 245555555555555
Q ss_pred cccccccCCCCCccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccc
Q 001171 301 AFTGVVKPPNGRCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSG 377 (1133)
Q Consensus 301 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 377 (1133)
.+++. .| +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+.+
T Consensus 164 ~l~~~-------------------------~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 164 QISDI-------------------------VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCC-------------------------GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCc-------------------------hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55543 23 55555555566665555542 245555666666666665554
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=181.75 Aligned_cols=153 Identities=23% Similarity=0.272 Sum_probs=78.8
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCceeecccC-cccCCCCCCcEEEccCCcccccCchhhccCCCccEEEcc
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLP-AAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLE 395 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (1133)
-+++++++|.++.++ ..+ ...+++|+|++|+|++..+ ..|..+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 13 ~~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 345666666666553 222 1234566666666654433 335555555555555555555555555555555555555
Q ss_pred CCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCC
Q 001171 396 GNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFG 472 (1133)
Q Consensus 396 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 472 (1133)
+|+|++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555544444555555555555555555444444545555555555555554444444444444444444444443
No 365
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=3.7e-18 Score=180.87 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=90.8
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccC
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEG 396 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 396 (1133)
-+.+++++++++.++. .+. ++|++|+|++|+|++..+..|..+++|++|+|++|++++..|+.|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 3566677777766633 222 5667777777777765556666677777777777776666666666666666666666
Q ss_pred CcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcC
Q 001171 397 NRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKF 471 (1133)
Q Consensus 397 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 471 (1133)
|+|+...+..|.++++|+.|+|++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666655445555555555555555555555555555555555555555555544444444455555555555544
No 366
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.3e-20 Score=227.69 Aligned_cols=121 Identities=18% Similarity=0.187 Sum_probs=63.2
Q ss_pred cceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCccCCCCCCcEEEccC
Q 001171 341 LRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGR 420 (1133)
Q Consensus 341 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 420 (1133)
|++|+|++|.|++ +|. |+.+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++ +| .++++++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4445555555543 333 455555555555555554 334455555555555555555554 33 455555555555555
Q ss_pred CcCcccc-CccccCccccceeecccccccccCCh---hhcCCCCCcEEec
Q 001171 421 NMFSGLI-PLSFGNLSQLETLNLSENDIRGNIPE---EITRLSNLTTLNL 466 (1133)
Q Consensus 421 N~l~~~~-p~~~~~l~~L~~L~L~~N~i~~~~~~---~l~~l~~L~~L~L 466 (1133)
|.|++.. |..|+.+++|+.|+|++|++++..+. .+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5555554 55555666666666666666544332 1233566666653
No 367
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.5e-18 Score=199.01 Aligned_cols=176 Identities=23% Similarity=0.242 Sum_probs=107.3
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccC-CCCCCcEEEccCCcccccCchhhccCCCccEEEcc
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVG-SLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLE 395 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (1133)
-+.+++++++++.++. .+. ..+++|+|++|+|++..+..|. .+++|++|+|++|+|+++.+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~iP~-~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ-SLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCS-SCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCc-cCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 4566777777776633 222 3466777777777766666666 67777777777777776666667777777777777
Q ss_pred CCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhh---cCCCCCcEEecccCcCC
Q 001171 396 GNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEI---TRLSNLTTLNLSYNKFG 472 (1133)
Q Consensus 396 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l---~~l~~L~~L~Ls~N~l~ 472 (1133)
+|+|++..+..|.++++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..| ..+++|+.|+|++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777766666666666666666666666666666666666666666666666664433333 34556666666666655
Q ss_pred CCCCCCCCCCCC--CcEEEcccCCC
Q 001171 473 GKVPYDVGNLKG--LLVLNLSASGF 495 (1133)
Q Consensus 473 ~~~~~~~~~l~~--L~~L~L~~N~l 495 (1133)
+..+..+..++. ++.|+|++|.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 433333333333 13344444443
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.8e-17 Score=176.81 Aligned_cols=156 Identities=23% Similarity=0.280 Sum_probs=92.5
Q ss_pred ccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEE
Q 001171 313 CVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMF 392 (1133)
Q Consensus 313 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 392 (1133)
+....+.+++++++++.++.. + .++|++|+|++|.|++..|..|..+++|++|+|++|+|+...+..|..+++|++|
T Consensus 17 ~~Cs~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 17 CSCSGTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp CEEETTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEeCCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 334466777777777776432 2 2667777777777776666667777777777777777765555556666666666
Q ss_pred EccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCC
Q 001171 393 DLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFG 472 (1133)
Q Consensus 393 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 472 (1133)
+|++|+|++..+..|..+++|+.|+|++|.++ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666666555555555555555555555555 33444455555555555555555444444444444555555444444
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.9e-18 Score=185.95 Aligned_cols=150 Identities=21% Similarity=0.282 Sum_probs=77.8
Q ss_pred CCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccccccccce
Q 001171 504 GSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVF 583 (1133)
Q Consensus 504 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 583 (1133)
..+++|++|++++|.++ .++ .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++. |.. .. ++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~~-~~-~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NGI-PS-ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TTC-CC-SSCCE
T ss_pred hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Ccc-cc-CcccE
Confidence 33344444444444443 222 33444444444444444443322 44444555555555555432 211 11 55666
Q ss_pred eecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCC
Q 001171 584 LSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSL 663 (1133)
Q Consensus 584 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 663 (1133)
|+|++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.|+|++|++++. ..+..+++|+.|++++|++
T Consensus 111 L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 111 LFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEccCCccCCC-h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 66666666532 2 35566666666666666664 33 456666666666666666644 4566666677777777766
Q ss_pred Ccc
Q 001171 664 SGR 666 (1133)
Q Consensus 664 ~~~ 666 (1133)
++.
T Consensus 185 ~~~ 187 (263)
T 1xeu_A 185 VNE 187 (263)
T ss_dssp ECC
T ss_pred cCC
Confidence 654
No 370
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.73 E-value=6.7e-18 Score=183.57 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=105.3
Q ss_pred CCCcccccccccceeEEEEEE-CCceE--EEEEEcccCCcC-------------------------HHHHHHHHHHHhhc
Q 001171 838 QFDEENVLSRGRYGLIFKASY-QDGMV--LSIRRLRDGTID-------------------------ENTFRKEAEALGKV 889 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~--vavK~~~~~~~~-------------------------~~~~~~E~~~l~~l 889 (1133)
-|++.+.||+|+||.||+|.+ .+|+. ||||+++..... ...+.+|+++++++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999988 67888 999987543211 13678999999999
Q ss_pred cCCCe--eeEEEEEeCCCCcEEEEEeccCC-C----CHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHh-cCCcee
Q 001171 890 KHRNL--TVLRGYYAGPPDVRLLVYDYMPN-G----NLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLH-SLDMVH 961 (1133)
Q Consensus 890 ~hpni--v~l~~~~~~~~~~~~lV~e~~~~-g----sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH-~~~ivH 961 (1133)
.|+++ ...+++ ...++||||+.+ | +|.++... .++..+..++.|++.|++||| +.||+|
T Consensus 128 ~~~~i~~p~~~~~-----~~~~lVmE~~g~~g~~~~~L~~~~~~--------~~~~~~~~i~~qi~~~l~~lH~~~givH 194 (258)
T 1zth_A 128 KEAGVSVPQPYTY-----MKNVLLMEFIGEDELPAPTLVELGRE--------LKELDVEGIFNDVVENVKRLYQEAELVH 194 (258)
T ss_dssp HHTTCCCCCEEEE-----ETTEEEEECCEETTEECCBHHHHGGG--------GGGSCHHHHHHHHHHHHHHHHHTSCEEC
T ss_pred HhCCCCCCeEEEc-----CCCEEEEEecCCCCCccccHHHHhhc--------cChHHHHHHHHHHHHHHHHHHHHCCEEe
Confidence 88764 333332 123899999942 4 67766432 234566789999999999999 999999
Q ss_pred cccCccceeeCCCCceEEeccCcccc
Q 001171 962 GDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 962 ~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
|||||+|||++. .++|+|||+|..
T Consensus 195 rDlkp~NILl~~--~~~liDFG~a~~ 218 (258)
T 1zth_A 195 ADLSEYNIMYID--KVYFIDMGQAVT 218 (258)
T ss_dssp SSCSTTSEEESS--SEEECCCTTCEE
T ss_pred CCCCHHHEEEcC--cEEEEECccccc
Confidence 999999999998 999999999854
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.5e-18 Score=185.49 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=102.4
Q ss_pred cccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEE
Q 001171 314 VSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFD 393 (1133)
Q Consensus 314 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (1133)
+..+..+++++|.++++. .+..+++|++|++++|.|+. ++ .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 334555566666666553 46667777777777777763 33 56667777777777777765544 66677777777
Q ss_pred ccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCC
Q 001171 394 LEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGG 473 (1133)
Q Consensus 394 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 473 (1133)
|++|++++. |.... ++|+.|+|++|.+++. ..+..+++|++|++++|+|++. ..+..+++|++|+|++|++++
T Consensus 92 L~~N~l~~l-~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Ccccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 777777642 22222 6666666666666653 2466666666666666666643 245566666666666666654
Q ss_pred CCCCCCCCCCCCcEEEcccCCCcc
Q 001171 474 KVPYDVGNLKGLLVLNLSASGFSG 497 (1133)
Q Consensus 474 ~~~~~~~~l~~L~~L~L~~N~l~~ 497 (1133)
. ..+..+++|+.|++++|.+++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 3 445555555555555555543
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=6.8e-18 Score=175.66 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=101.5
Q ss_pred cccccCcEEEcccCcccCCCCccccCCCCcceEeccCCcccCcCCCccccccchhhhhhcccccCCCccCccCCcceEEE
Q 001171 92 ADLHELRKLSLHSNHLNGSIPASLHQCSLLRAVYLQYNSFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRYLD 171 (1133)
Q Consensus 92 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 171 (1133)
+++++|+.|++++|+++ .+| .+..+++|+.|++++|.++ .+..+.++ ++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l----------------------~~L~~L~ 94 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGL----------------------SNLERLR 94 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTC----------------------TTCCEEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcC----------------------CCCCEEE
Confidence 34455555555555555 344 3555555555555555433 11122222 4567777
Q ss_pred ccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeeccccccCC
Q 001171 172 LSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDNVLKG 251 (1133)
Q Consensus 172 Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 251 (1133)
|++|.+++..|..|+.+++|++|++++|++++..|..++.+++|++|++++|++.+.+| .+.++++|++|++++|++++
T Consensus 95 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred eECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 77777777677778888888888888888887777788888888888888887333555 57777888888888888876
Q ss_pred CCCCcccCcCcccEEEcccCCcc
Q 001171 252 LIPGTIGRISTLQVLSLSRNELT 274 (1133)
Q Consensus 252 ~~~~~~~~l~~L~~L~Ls~N~l~ 274 (1133)
+. .+..+++|++|++++|++.
T Consensus 174 ~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT--TGGGCSSCCEEEECBC---
T ss_pred hH--HhccCCCCCEEEeeCcccC
Confidence 43 6777778888888888765
No 373
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3e-18 Score=213.78 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=94.1
Q ss_pred cccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccC
Q 001171 490 LSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTG 569 (1133)
Q Consensus 490 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 569 (1133)
++.|.+. ..+..+..+++|+.|+|++|.+. .+|..++++++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3344444 45566667777777777777776 56666667777777777777776 56666666777777777777776
Q ss_pred CCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccc-cCeeecCCCcccCcCchhhh
Q 001171 570 DIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSR-IKKLDLGQNKLSGEIPKEIS 648 (1133)
Q Consensus 570 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~ 648 (1133)
.+|..|+.+++|++|+|++|.|+ .+|..|+.+++|++|+|++|+|++.+|..+..+.. +..|+|++|.+++.+|..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-- 360 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-- 360 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence 55666666777777777777666 55666666777777777777776666655544322 233566666666655543
Q ss_pred ccCCCcEEEeecCCCCccCCccccCcccccccccccccccccCCccccccccCccccccccccccc
Q 001171 649 KCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGE 714 (1133)
Q Consensus 649 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 714 (1133)
|..|++++|... ...+ +.|.+..+..+..+..+....+++|-+.+.
T Consensus 361 ----l~~l~l~~n~~~---~~~~-------------~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 361 ----RRFIEINTDGEP---QREY-------------DSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp -------------------------------------------------------------CCCGG
T ss_pred ----cceeEeeccccc---cccc-------------CCccccccchhhcccccceeeeeccccccc
Confidence 334444444100 0111 133344444455666667777788877643
No 374
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=5.5e-18 Score=191.82 Aligned_cols=221 Identities=16% Similarity=0.097 Sum_probs=122.4
Q ss_pred ccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcc----cccCCCccCCCCCC
Q 001171 338 VTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRF----SGQVPAFLGGIRGL 413 (1133)
Q Consensus 338 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~p~~l~~l~~L 413 (1133)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.+..+.+.+|..+.++..+.+..+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 44444444444 34333333444444444444444444444444444444444444333211 11222334344444
Q ss_pred c-EEEccCCc-CccccCccccCccccceeecccccccccCChhh-cCCCCCcEEecccCcCCCCCCCCCCCCCCCcEEEc
Q 001171 414 K-IVSLGRNM-FSGLIPLSFGNLSQLETLNLSENDIRGNIPEEI-TRLSNLTTLNLSYNKFGGKVPYDVGNLKGLLVLNL 490 (1133)
Q Consensus 414 ~-~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 490 (1133)
+ .+.+.... +.......-....+++.+.+.++-.. .....+ ..+++|+.|+|++|.++.+....|.++.+|+.|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 4 33332211 11001111112445555555544211 111112 23677777777777777666677777777888877
Q ss_pred ccCCCccccCCCcCCccccc-EEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEc
Q 001171 491 SASGFSGKIPGSIGSLMRLT-TLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNL 562 (1133)
Q Consensus 491 ~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 562 (1133)
.+| +....+..|.++.+|+ .+++.+ +++.+.+.+|.++++|+.|++++|.++...+.+|.++++|+.++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 776 6666677788888887 888877 666666778888888888888888888777778888888888763
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.8e-17 Score=172.42 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=98.5
Q ss_pred CCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCe
Q 001171 552 SSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKK 631 (1133)
Q Consensus 552 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 631 (1133)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..++.+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455666666666665 333 45566666666666665542 235666677777777777776655666667777777
Q ss_pred eecCCCcccCcCchhhhccCCCcEEEeecCC-CCccCCccccCcccccccccccccccccCCccccccccCccccccccc
Q 001171 632 LDLGQNKLSGEIPKEISKCSSLVSLTLDMNS-LSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNN 710 (1133)
Q Consensus 632 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 710 (1133)
|+|++|++++..|..++.+++|+.|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 7777777776666777777777777777776 44 444 56777777777777777764 33 56777777777777777
Q ss_pred ccc
Q 001171 711 LEG 713 (1133)
Q Consensus 711 l~~ 713 (1133)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 653
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.5e-17 Score=188.16 Aligned_cols=263 Identities=14% Similarity=0.069 Sum_probs=121.3
Q ss_pred ccccceeeccCceee--cccCcccCCCCCCcEEEccCCcccccCchhhcc--------CCCccEEEccCCcccccCCCcc
Q 001171 338 VTSLRVMDLSGNFFS--GNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAK--------CSLLQMFDLEGNRFSGQVPAFL 407 (1133)
Q Consensus 338 l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~l 407 (1133)
+++|++|||++|+|. ...+. .++.+..+.+..|.+ .+..|.+ |++|+.|+|.+ .++.+.+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 566777777777766 22221 222244455555533 2344555 66666666666 6665555666
Q ss_pred CCCCCCcEEEccCCcCccccCccccCccccceeecccccc----cccCChhhcCCCCCc-EEecccCcCCCCCCCCCCCC
Q 001171 408 GGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDI----RGNIPEEITRLSNLT-TLNLSYNKFGGKVPYDVGNL 482 (1133)
Q Consensus 408 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i----~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l 482 (1133)
.++++|+.+++++|.+..+.+.+|.++.++..+.+..+.. .......|.++.+|+ .+.+.... .++.
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~----- 192 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLED----- 192 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHH-----
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHH-----
Confidence 6666666666666666656666666666565555544221 111222333344443 22222110 0000
Q ss_pred CCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhcc-CCCCCcEeeccCCcccccCCCCCCCCccCcEEE
Q 001171 483 KGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELF-GLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLN 561 (1133)
Q Consensus 483 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 561 (1133)
.....-....+++.+.+.++-.. .....+. .+++|+.|+|++|+++...+.+|.++.+|+.|+
T Consensus 193 ---------------~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 193 ---------------EIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp ---------------HHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------HHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 00000011233333433332111 1111111 144455555555555444444455555555555
Q ss_pred cccccccCCCCcccccccccc-eeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeee
Q 001171 562 LSDNAFTGDIPATYGFLRSLV-FLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLD 633 (1133)
Q Consensus 562 Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 633 (1133)
|.+| ++.+.+.+|.++++|+ .+++.+ .++...+..|..+++|+.|++++|+++...+..|.++++|+.++
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5544 4444444455555555 555544 44434444555555555555555555543334455555555544
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.3e-17 Score=170.73 Aligned_cols=130 Identities=28% Similarity=0.378 Sum_probs=71.7
Q ss_pred cEEEcccccccCCCCcccccccccceeecccCccCCCCCc-cccCCCCccEEEecCCcccCCCccccccccccCeeecCC
Q 001171 558 QYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPA-ELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQ 636 (1133)
Q Consensus 558 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 636 (1133)
+.+++++|+++ .+|..+. .+|++|++++|+|++..+. .++.+++|++|+|++|+|++..|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 55666666664 3444332 2556666666666544432 255555566666665555555555555555555555555
Q ss_pred CcccCcCchhhhccCCCcEEEeecCCCCccCCccccCccccccccccccccccc
Q 001171 637 NKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRLSGA 690 (1133)
Q Consensus 637 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 690 (1133)
|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555555455555555555555555555555555555555555555555555543
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.3e-16 Score=165.15 Aligned_cols=130 Identities=26% Similarity=0.344 Sum_probs=69.9
Q ss_pred cEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCc-ccccccccceeecccCccCCCCCccccCCCCccEEEecC
Q 001171 534 QVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPA-TYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRS 612 (1133)
Q Consensus 534 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 612 (1133)
+.+++++|+++ .+|..+.. +|++|++++|++++..+. .|+.+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 33333322 555555555555544432 255555555555555555555555555555555555555
Q ss_pred CcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCcc
Q 001171 613 NHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGR 666 (1133)
Q Consensus 613 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 666 (1133)
|+|++..+..+..+++|++|+|++|+|++..|..+..+++|+.|+|++|.+++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555554444455555555555555555555555555555555555555555543
No 379
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=3.6e-15 Score=172.16 Aligned_cols=268 Identities=15% Similarity=0.113 Sum_probs=149.6
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccC
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEG 396 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 396 (1133)
++.+.+. |.++.|...+|.++ +|+.++|.+| +..+-..+|.++ +|+.+.+.+ .++.+.+.+|.+|++|+.++|++
T Consensus 115 l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 3444443 34666666777765 5777777666 554555566664 577777765 55555566677777777777777
Q ss_pred CcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCC
Q 001171 397 NRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVP 476 (1133)
Q Consensus 397 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 476 (1133)
|+++......|. ..+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.+....|.+ .+|+.+.+. +.++.+..
T Consensus 190 n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~ 264 (401)
T 4fdw_A 190 TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS 264 (401)
T ss_dssp SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT
T ss_pred CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh
Confidence 776655555555 366666666633 55555666666666666666654 44444445544 456666552 33443444
Q ss_pred CCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCcc
Q 001171 477 YDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVG 556 (1133)
Q Consensus 477 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 556 (1133)
..|.++++|+.+++.+|.+.. +.+....+.+|.++++|+.+.|. +.++.....+|.++.+
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRK 324 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCS
T ss_pred hHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCC
Confidence 455555555555555444330 00002333445555555555555 2344444555555666
Q ss_pred CcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCC-CccEEEecCCccc
Q 001171 557 LQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACS-ALEVLELRSNHFT 616 (1133)
Q Consensus 557 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~ 616 (1133)
|+.++|..| ++.....+|.++ +|+.+++++|.+....+..|..++ +++.|++..+.+.
T Consensus 325 L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 325 VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 666666433 444445555555 666666666665544445555553 5666666665543
No 380
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=1.9e-14 Score=166.17 Aligned_cols=242 Identities=10% Similarity=0.048 Sum_probs=160.3
Q ss_pred CccEEEccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecc
Q 001171 388 LLQMFDLEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLS 467 (1133)
Q Consensus 388 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 467 (1133)
+|+.++|..| ++.+...+|.+. +|+.+.+.. .++.+.+.+|.+|++|+.+++++|+++.+....|. ..+|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444433 333333444442 355555543 34444445555555555555555555544444443 3556666665
Q ss_pred cCcCCCCCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCccc---
Q 001171 468 YNKFGGKVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLS--- 544 (1133)
Q Consensus 468 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--- 544 (1133)
.+ ++.+....|.++++|+.+++..| ++......|.+ ++|+.+++. +.++.....+|.++++|+.+.+.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 33 44455555666666666666553 44445556666 677777773 4455556677777778888887777664
Q ss_pred --ccCCCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccc
Q 001171 545 --GDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVD 622 (1133)
Q Consensus 545 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 622 (1133)
...+.+|.++++|+.++|. +.++.....+|.++.+|+.+.|..| ++......|..+ +|+.+++++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 4677899999999999999 5588777889999999999999665 776677889999 9999999999988655566
Q ss_pred ccccc-ccCeeecCCCccc
Q 001171 623 ISHLS-RIKKLDLGQNKLS 640 (1133)
Q Consensus 623 l~~l~-~L~~L~Ls~N~l~ 640 (1133)
+..++ +++.|++..+.+.
T Consensus 365 F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCCSCTTCCEEEECGGGHH
T ss_pred ccCCCCCccEEEeCHHHHH
Confidence 77774 7889999888765
No 381
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.8e-16 Score=160.73 Aligned_cols=132 Identities=24% Similarity=0.351 Sum_probs=93.0
Q ss_pred ceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecC
Q 001171 582 VFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMN 661 (1133)
Q Consensus 582 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 661 (1133)
+.+++++|.++ .+|..+ .++|++|+|++|+|+ .+|..+..+++|+.|+|++|.|++..+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35566666665 444443 246777777777776 46666777777777777777777666667777777777777777
Q ss_pred CCCccCCccccCcccccccccccccccccCCccccccccCcccccccccccccCCc
Q 001171 662 SLSGRIPESFSKLSNLTTLNLSTNRLSGAIPADLALISSLRYLNLSRNNLEGEIPK 717 (1133)
Q Consensus 662 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 717 (1133)
+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|++++|+|.+.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 77776667777777788888888887755555677778888888888888776653
No 382
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=158.05 Aligned_cols=126 Identities=27% Similarity=0.309 Sum_probs=97.4
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccC
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYG 227 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 227 (1133)
+++++|.++ .+|..+++++++|+|++|+|+ .+|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++
T Consensus 15 l~~~~~~l~-~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EECTTSCCS-SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEcCCCCCC-cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 344444443 355556677888888888887 567788888888888888888887777778888888888888888887
Q ss_pred CCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCccC
Q 001171 228 TLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTG 275 (1133)
Q Consensus 228 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 275 (1133)
..|..|.++++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 777778888888888888888887777778888888888888887763
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.6e-15 Score=153.27 Aligned_cols=132 Identities=24% Similarity=0.247 Sum_probs=66.1
Q ss_pred ccCcEEEccccccc-CCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeee
Q 001171 555 VGLQYLNLSDNAFT-GDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLD 633 (1133)
Q Consensus 555 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 633 (1133)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555554 34444455555555555555555533 4445555555555555555544444444455555555
Q ss_pred cCCCcccCcC-chhhhccCCCcEEEeecCCCCccCC---ccccCccccccccccccccc
Q 001171 634 LGQNKLSGEI-PKEISKCSSLVSLTLDMNSLSGRIP---ESFSKLSNLTTLNLSTNRLS 688 (1133)
Q Consensus 634 Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 688 (1133)
|++|.+++.. +..+..+++|+.|++++|++++..+ ..|..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555321 1444555555555555555553332 24445555555555555544
No 384
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.6e-15 Score=153.17 Aligned_cols=120 Identities=26% Similarity=0.341 Sum_probs=103.6
Q ss_pred ccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccc
Q 001171 159 ISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSS 238 (1133)
Q Consensus 159 ~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 238 (1133)
+|..++++|++|+|++|++++..+..|..+++|++|++++|++++..+..++.+++|++|+|++|++++..+..+.++++
T Consensus 22 ~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 22 VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 44556678899999999999877788899999999999999999776677889999999999999999777777889999
Q ss_pred cceeeccccccCCCCCCcccCcCcccEEEcccCCccCCcc
Q 001171 239 LVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELTGLVP 278 (1133)
Q Consensus 239 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 278 (1133)
|++|++++|+++++.+..+..+++|++|+|++|.+.+..|
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999998877778889999999999999886544
No 385
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.5e-15 Score=153.56 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=59.4
Q ss_pred ccccEEeccCCccc-ccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEE
Q 001171 315 SVLEVLDLQNNRIR-AVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFD 393 (1133)
Q Consensus 315 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (1133)
..|++|++++|+|+ +..|..+..+++|++|+|++|.|++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666666 22255566666666666666666643 5556666666666666666655555555566666666
Q ss_pred ccCCcccccCC-CccCCCCCCcEEEccCCcCc
Q 001171 394 LEGNRFSGQVP-AFLGGIRGLKIVSLGRNMFS 424 (1133)
Q Consensus 394 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~ 424 (1133)
|++|++++..+ ..+..+++|+.|++++|.++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 66665553211 33344444444444444443
No 386
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=2.5e-14 Score=166.07 Aligned_cols=316 Identities=12% Similarity=0.090 Sum_probs=150.4
Q ss_pred ccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEccCCcccccCCCc
Q 001171 327 IRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLEGNRFSGQVPAF 406 (1133)
Q Consensus 327 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 406 (1133)
++.|...+|.++++|+.+.|..+ ++.+-..+|.++++|+.+++.++ ++.+....|.++.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45555566666666666666543 44344455666666666666543 44444555666666666555433 33333444
Q ss_pred cCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCCCCCCCCCCCCc
Q 001171 407 LGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKVPYDVGNLKGLL 486 (1133)
Q Consensus 407 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 486 (1133)
|.++..++...... +......+|.++++|+.+.+.++- ..+....|.++.+|+.+++..| ++.+....|.++..|+
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 54444333222222 122234556666666666665442 2244455666666666666554 3334445555555665
Q ss_pred EEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEccccc
Q 001171 487 VLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNA 566 (1133)
Q Consensus 487 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 566 (1133)
.+.+..+... +...+....+|+.+.+..+ ++......+.++..|+.+.+..+... .....|..+..++.+....+.
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred eeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 5555444322 1222233345555555432 22233344555555555555544332 344455555555555554433
Q ss_pred ccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchh
Q 001171 567 FTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKE 646 (1133)
Q Consensus 567 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 646 (1133)
+. ...|..+.+|+.+.+..+ ++......|..+.+|+.++|.++ ++......|.++.+|+.+++..| ++.....+
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 22 233444455555555433 33233334444555555554322 33222233444444444444443 33233344
Q ss_pred hhccCCCcEEEee
Q 001171 647 ISKCSSLVSLTLD 659 (1133)
Q Consensus 647 l~~l~~L~~L~Ls 659 (1133)
|.+|.+|+.+++.
T Consensus 362 F~~C~~L~~i~lp 374 (394)
T 4fs7_A 362 FQGCINLKKVELP 374 (394)
T ss_dssp BTTCTTCCEEEEE
T ss_pred hhCCCCCCEEEEC
Confidence 4444444444443
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.7e-15 Score=149.75 Aligned_cols=127 Identities=25% Similarity=0.365 Sum_probs=69.2
Q ss_pred cccceeecccCccC-CCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEE
Q 001171 579 RSLVFLSLSHNQIS-GMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLT 657 (1133)
Q Consensus 579 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 657 (1133)
++|++|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555554 34444445555555555555555532 3455555555555555555544555555556666666
Q ss_pred eecCCCCcc-CCccccCcccccccccccccccccCC---ccccccccCcccccc
Q 001171 658 LDMNSLSGR-IPESFSKLSNLTTLNLSTNRLSGAIP---ADLALISSLRYLNLS 707 (1133)
Q Consensus 658 Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls 707 (1133)
+++|++++. .+..++.+++|+.|++++|++++..+ ..+..+++|++||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665542 23555666666666666666654433 345566666666654
No 388
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.58 E-value=1.3e-15 Score=170.89 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=100.5
Q ss_pred CCCcccccccccceeEEEEEECCceEEEEEEcccCCc---------------CHH--------HHHHHHHHHhhccCCCe
Q 001171 838 QFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI---------------DEN--------TFRKEAEALGKVKHRNL 894 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~---------------~~~--------~~~~E~~~l~~l~hpni 894 (1133)
-|++.+.||+|+||.||+|...+|+.||||+++.... ... ...+|...+.++.+..+
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3899999999999999999998999999998753211 011 12457777888765554
Q ss_pred eeEEEEEeCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccceeeCCC
Q 001171 895 TVLRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQNVLFDAD 974 (1133)
Q Consensus 895 v~l~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~NIll~~~ 974 (1133)
....-+... . .++||||++|++|.++. .......++.||+.++.|||+.|||||||||.|||++++
T Consensus 176 ~vp~p~~~~--~-~~LVME~i~G~~L~~l~-----------~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~d 241 (397)
T 4gyi_A 176 PVPEPIAQS--R-HTIVMSLVDALPMRQVS-----------SVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREE 241 (397)
T ss_dssp SCCCEEEEE--T-TEEEEECCSCEEGGGCC-----------CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEE
T ss_pred CCCeeeecc--C-ceEEEEecCCccHhhhc-----------ccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCC
Confidence 322222111 1 27999999988764332 122345688999999999999999999999999999877
Q ss_pred C----------ceEEeccCcccc
Q 001171 975 F----------EAHLSEFGLDRL 987 (1133)
Q Consensus 975 ~----------~~kl~Dfg~a~~ 987 (1133)
+ .+.|+||+-+..
T Consensus 242 gd~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 242 KDAEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp ECSSCTTSEEEEEEECCCTTCEE
T ss_pred CCcccccccccceEEEEeCCccc
Confidence 6 388999997753
No 389
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.7e-15 Score=148.29 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=86.8
Q ss_pred ccCcEEEccccccc-CCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeee
Q 001171 555 VGLQYLNLSDNAFT-GDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLD 633 (1133)
Q Consensus 555 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 633 (1133)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|++++|++++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45566666666666666666666644 5566677777777777777765666666677777777
Q ss_pred cCCCcccCc-CchhhhccCCCcEEEeecCCCCccCC---ccccCccccccccccc
Q 001171 634 LGQNKLSGE-IPKEISKCSSLVSLTLDMNSLSGRIP---ESFSKLSNLTTLNLST 684 (1133)
Q Consensus 634 Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~ 684 (1133)
|++|.+++. .+..++.+++|+.|++++|++++..+ ..++.+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777752 34667777777777777777776554 4677777777777763
No 390
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.3e-14 Score=147.88 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=77.7
Q ss_pred cccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEcc
Q 001171 316 VLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLE 395 (1133)
Q Consensus 316 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (1133)
..+.+++++|+++.++... .++|++|++++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|+|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3455666666666653222 2466666666666665555556666666666666666665555555666666666666
Q ss_pred CCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeeccccccccc
Q 001171 396 GNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGN 450 (1133)
Q Consensus 396 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~ 450 (1133)
+|+|++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 6666655555555556666666666666554444455555566666665555543
No 391
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=1.7e-13 Score=158.88 Aligned_cols=322 Identities=13% Similarity=0.114 Sum_probs=168.6
Q ss_pred cccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEcc
Q 001171 316 VLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDLE 395 (1133)
Q Consensus 316 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (1133)
+|+.+.|.+ .++.|...+|.+|++|+.++|.++ ++.+-..+|.++++|+.+.+..+ +......+|..+..+......
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCc
Confidence 344444432 244555555555555555555543 33233345555555555544433 333334444444433332222
Q ss_pred CCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCCCC
Q 001171 396 GNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGGKV 475 (1133)
Q Consensus 396 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 475 (1133)
.. ......+|.++++|+.+.+..+. ..+....|.++.+|+.+.+..| ++.+....|.++..|+.+.+..+... +
T Consensus 149 ~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i 222 (394)
T 4fs7_A 149 GV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--L 222 (394)
T ss_dssp TC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred cc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--e
Confidence 22 11233455556666666665432 2244455666666666666554 44344455566666666655544322 1
Q ss_pred CCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCc
Q 001171 476 PYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLV 555 (1133)
Q Consensus 476 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 555 (1133)
.........|+.+.+..+ ++......|..+.+|+.+.+..+... .....|..+..++.+....+.+ ....|..+.
T Consensus 223 ~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~ 297 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCS 297 (394)
T ss_dssp CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCT
T ss_pred ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccc
Confidence 222223345566655432 23234445566666666666655433 4455566666666666655432 234566666
Q ss_pred cCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecC
Q 001171 556 GLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLG 635 (1133)
Q Consensus 556 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 635 (1133)
+|+.+.+.++ ++.....+|.++.+|+.++|..+ ++......|.++.+|+.+++..| ++......|.++++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 6776666544 44444556666677777776543 55444556666777777777655 543334556667777777776
Q ss_pred CCcccCcCchhhhccCCCcEE
Q 001171 636 QNKLSGEIPKEISKCSSLVSL 656 (1133)
Q Consensus 636 ~N~l~~~~p~~l~~l~~L~~L 656 (1133)
.+ ++ .+..+|.++++|+.+
T Consensus 375 ~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 375 KR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GG-GG-GGGGGBCTTCEEEEE
T ss_pred CC-CE-EhhheecCCCCCcEE
Confidence 54 22 234456666666553
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.1e-16 Score=164.45 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=92.3
Q ss_pred ccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCC
Q 001171 574 TYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSL 653 (1133)
Q Consensus 574 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 653 (1133)
.+..+++|++|+|++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 66666777777777777764 45 6666777777777777776 466666666777777777777774 44 57777777
Q ss_pred cEEEeecCCCCccCC-ccccCcccccccccccccccccCCcc----------ccccccCcccccccccccc
Q 001171 654 VSLTLDMNSLSGRIP-ESFSKLSNLTTLNLSTNRLSGAIPAD----------LALISSLRYLNLSRNNLEG 713 (1133)
Q Consensus 654 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~~ 713 (1133)
+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|+.|| +|+++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777777774322 45677777888888888777665543 67778888776 666653
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=4.9e-16 Score=161.74 Aligned_cols=152 Identities=25% Similarity=0.300 Sum_probs=98.5
Q ss_pred CCCCcEeeccCCcccccCCC------CCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCC
Q 001171 530 LPSLQVVSLEENNLSGDVPE------GFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACS 603 (1133)
Q Consensus 530 l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 603 (1133)
.+.++.++++.+.+++..|. .|..+++|++|+|++|++++ +| .+..+++|++|++++|+++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444444444444443 55566666666666666664 44 6666667777777777766 4565566666
Q ss_pred CccEEEecCCcccCCCccccccccccCeeecCCCcccCcCc-hhhhccCCCcEEEeecCCCCccCCcc----------cc
Q 001171 604 ALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIP-KEISKCSSLVSLTLDMNSLSGRIPES----------FS 672 (1133)
Q Consensus 604 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~----------~~ 672 (1133)
+|++|++++|++++ +| .+..+++|+.|+|++|++++..+ ..+..+++|+.|++++|++++.+|.. +.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 77777777777764 44 56677777777777777774322 46777778888888888777665542 67
Q ss_pred Cccccccccccccccc
Q 001171 673 KLSNLTTLNLSTNRLS 688 (1133)
Q Consensus 673 ~l~~L~~L~Ls~N~l~ 688 (1133)
.+++|+.|| +|.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 778888776 66665
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=3.6e-14 Score=144.41 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=79.1
Q ss_pred cccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEE
Q 001171 314 VSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFD 393 (1133)
Q Consensus 314 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (1133)
+.+|++|++++|+|+.+ |......++|++|+|++|.|++. ..|+.+++|++|+|++|++++..+..+..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 44566666666666655 33333333777777777777754 5667777777777777777765555556777777777
Q ss_pred ccCCcccccCCC--ccCCCCCCcEEEccCCcCccccCc----cccCccccceeeccccccc
Q 001171 394 LEGNRFSGQVPA--FLGGIRGLKIVSLGRNMFSGLIPL----SFGNLSQLETLNLSENDIR 448 (1133)
Q Consensus 394 Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~i~ 448 (1133)
|++|+|+. +|. .+..+++|+.|++++|.++.. |. .+..+++|++|++++|.+.
T Consensus 95 L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777753 333 555566666666666666532 33 2555555555555555543
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=4.2e-14 Score=143.97 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=65.1
Q ss_pred cccccceeecccCccCCCCCccccCC-CCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcE
Q 001171 577 FLRSLVFLSLSHNQISGMIPAELGAC-SALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVS 655 (1133)
Q Consensus 577 ~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 655 (1133)
.+.+|++|++++|+++. +|. +..+ ++|++|++++|++++. ..+..+++|+.|+|++|.|++..+..+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 33444444444444442 222 2222 2455555555555432 34445555555555555555333333355555555
Q ss_pred EEeecCCCCccCCc--cccCcccccccccccccccccCCcc----ccccccCccccccccccc
Q 001171 656 LTLDMNSLSGRIPE--SFSKLSNLTTLNLSTNRLSGAIPAD----LALISSLRYLNLSRNNLE 712 (1133)
Q Consensus 656 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~ 712 (1133)
|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|++||+++|.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555555554 2333 4555666666666666665 34443 556666666666666554
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=7.4e-13 Score=133.64 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=76.1
Q ss_pred ceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeeccc
Q 001171 167 LRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAED 246 (1133)
Q Consensus 167 l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 246 (1133)
.+.+++++|.++. +|..+. ++|++|+|++|+|++..|..|+.+++|++|+|++|++++..+..+.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3566677777664 454442 6677777777777766666777777777777777777755555667777777777777
Q ss_pred cccCCCCCCcccCcCcccEEEcccCCccCC
Q 001171 247 NVLKGLIPGTIGRISTLQVLSLSRNELTGL 276 (1133)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 276 (1133)
|+|+++.+..|..+++|++|+|++|.++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777777777788888888888888887644
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.5e-12 Score=131.82 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=69.6
Q ss_pred eEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccCCCCccccCccccceeecccc
Q 001171 168 RYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAEDN 247 (1133)
Q Consensus 168 ~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 247 (1133)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|+.+++|++|+|++|+|++..+..+.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 4454443 56666666666666666666666667777777777766544445566777777777777
Q ss_pred ccCCCCCCcccCcCcccEEEcccCCccC
Q 001171 248 VLKGLIPGTIGRISTLQVLSLSRNELTG 275 (1133)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 275 (1133)
+|+++.+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7776666667777777788888777763
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.2e-12 Score=132.02 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=71.5
Q ss_pred ccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEEc
Q 001171 315 SVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFDL 394 (1133)
Q Consensus 315 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (1133)
...+++++++|+++.++. .+ .++|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|
T Consensus 9 C~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp EETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 345667777777777633 22 266777777777777666667777777777777777777666666666777777777
Q ss_pred cCCcccccCCCccCCCCCCcEEEccCCcCcc
Q 001171 395 EGNRFSGQVPAFLGGIRGLKIVSLGRNMFSG 425 (1133)
Q Consensus 395 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 425 (1133)
++|+|++..+..|..+++|+.|+|++|.++.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7777766555556666666666666666653
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=8.9e-13 Score=133.49 Aligned_cols=104 Identities=26% Similarity=0.279 Sum_probs=86.8
Q ss_pred hhhcccccCCCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCCCCCcccccCccccceEecccccccC
Q 001171 148 LNVAHNLLSGKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFSGEVPASVGQLQELEYLWLDSNHLYG 227 (1133)
Q Consensus 148 L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 227 (1133)
+++++|+++ .+|..++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|+.+++|++|+|++|+|++
T Consensus 17 l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 17 VNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp EECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce
Confidence 344444442 4556667788999999999999999999999999999999999997666667899999999999999996
Q ss_pred CCCccccCccccceeeccccccCCC
Q 001171 228 TLPSAISNCSSLVHLSAEDNVLKGL 252 (1133)
Q Consensus 228 ~~p~~l~~l~~L~~L~l~~N~l~~~ 252 (1133)
..+..+.++++|++|++++|.+...
T Consensus 96 l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 96 IPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred eCHHHhccccCCCEEEeCCCCcccc
Confidence 6666699999999999999999854
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=3.5e-11 Score=139.46 Aligned_cols=133 Identities=13% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCCCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCcccccccc
Q 001171 548 PEGFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLS 627 (1133)
Q Consensus 548 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 627 (1133)
..+|.++..|+.+.+.++..+ .....|.++++|+.+.+. +.++......|..+.+|+.++|..+ ++......|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 344444455555554433221 333444445555555553 2333233344555555555555433 3322233455555
Q ss_pred ccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccccccccccccc
Q 001171 628 RIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNLTTLNLSTNRL 687 (1133)
Q Consensus 628 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 687 (1133)
+|+.+.|..+ ++.....+|.+|++|+.+++.+|.... ..+....+|+.+.+..|.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 5666666443 443444556666666666666654331 3445555666666655543
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=4.6e-11 Score=138.41 Aligned_cols=322 Identities=13% Similarity=0.133 Sum_probs=140.8
Q ss_pred ccEEeccCCcccccCCchhhcccccceeeccCce---eecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccEEE
Q 001171 317 LEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNF---FSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQMFD 393 (1133)
Q Consensus 317 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 393 (1133)
|+.+.+-+ .++.|...+|.+|++|+.+.+++|. ++.+-..+|..+.+|+.+.+..+ ++.+....|..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 44444433 2555556666666666666666553 33333445666666666555443 3334445556666666666
Q ss_pred ccCCcccccCCCccCCCCCCcEEEccCCcCccccCccccCccccceeecccccccccCChhhcCCCCCcEEecccCcCCC
Q 001171 394 LEGNRFSGQVPAFLGGIRGLKIVSLGRNMFSGLIPLSFGNLSQLETLNLSENDIRGNIPEEITRLSNLTTLNLSYNKFGG 473 (1133)
Q Consensus 394 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 473 (1133)
+..+ +.......|.++..|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-. ......|..+.+++......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 6533 23244445556666666666543 33344444443 4466665544322 2344455555555555554443321
Q ss_pred CCCCCCCCCCCCcEEEcccCCCccccCCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCC
Q 001171 474 KVPYDVGNLKGLLVLNLSASGFSGKIPGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSS 553 (1133)
Q Consensus 474 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 553 (1133)
..-..+........... .+.....+..+.+.+ .++.....+|.++..|+.+.+..+..+ ....+|.+
T Consensus 220 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp SSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred ccceeeccccccccccc-----------ccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence 11000000000000000 000111122222211 122222334444445555544433222 33444555
Q ss_pred CccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeee
Q 001171 554 LVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLD 633 (1133)
Q Consensus 554 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 633 (1133)
+.+|+.+.+. +.++......|.++.+|+.+.|..+ ++......|..+.+|+.+.+..+ ++......|.++++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 5555555553 2333333444555555555555433 33333444555555666555433 4433334455556666666
Q ss_pred cCCCcccCcCchhhhccCCCcEEEeecCCC
Q 001171 634 LGQNKLSGEIPKEISKCSSLVSLTLDMNSL 663 (1133)
Q Consensus 634 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 663 (1133)
+.+|.... ..+..+.+|+.+.+..|.+
T Consensus 364 ~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 364 YSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ESSCHHHH---HTCBCCCCC----------
T ss_pred ECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 65554331 3445556666666655543
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=4.1e-14 Score=161.73 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=71.8
Q ss_pred ccCcEEEcccccccCCCCccc-ccccccceeecccCccCCCCCccc-----cCCCCccEEEecCCcccCC----Cccccc
Q 001171 555 VGLQYLNLSDNAFTGDIPATY-GFLRSLVFLSLSHNQISGMIPAEL-----GACSALEVLELRSNHFTGN----IPVDIS 624 (1133)
Q Consensus 555 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~----~p~~l~ 624 (1133)
++|++|+|++|.+++.....+ ..+++|++|+|++|.|++.....+ ...++|++|+|++|.|+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555555443222222 233455666666665554333332 2345566666666666531 223334
Q ss_pred cccccCeeecCCCcccCcC----chhhhccCCCcEEEeecCCCCccCC----ccccCcccccccccccccccccCCccc
Q 001171 625 HLSRIKKLDLGQNKLSGEI----PKEISKCSSLVSLTLDMNSLSGRIP----ESFSKLSNLTTLNLSTNRLSGAIPADL 695 (1133)
Q Consensus 625 ~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~l 695 (1133)
.+++|++|+|++|.|++.. +..+..+++|+.|+|++|.|++... ..+...++|++|||++|.|++.....+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 5566666666666665432 3444555666666666666654322 223344566666666666654444333
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=8.4e-14 Score=159.15 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=91.0
Q ss_pred CCCcEeeccCCcccccCCCCC-CCCccCcEEEcccccccCCCCccc-----ccccccceeecccCccCCC----CCcccc
Q 001171 531 PSLQVVSLEENNLSGDVPEGF-SSLVGLQYLNLSDNAFTGDIPATY-----GFLRSLVFLSLSHNQISGM----IPAELG 600 (1133)
Q Consensus 531 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~l~ 600 (1133)
++|++|+|++|.++......+ ..+.+|+.|+|++|.+++.....+ ...++|++|+|++|.|++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555543222222 234556677777776664433333 2346677788888877642 333345
Q ss_pred CCCCccEEEecCCcccCC----CccccccccccCeeecCCCcccCc----CchhhhccCCCcEEEeecCCCCccCCcccc
Q 001171 601 ACSALEVLELRSNHFTGN----IPVDISHLSRIKKLDLGQNKLSGE----IPKEISKCSSLVSLTLDMNSLSGRIPESFS 672 (1133)
Q Consensus 601 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 672 (1133)
.+++|++|+|++|.|++. ++..+...++|+.|+|++|.|++. ++..+..+++|+.|+|++|.|++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 677888888888888742 244566677889999999988754 334455678899999999999876555554
Q ss_pred C
Q 001171 673 K 673 (1133)
Q Consensus 673 ~ 673 (1133)
.
T Consensus 261 ~ 261 (372)
T 3un9_A 261 D 261 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=5.3e-11 Score=135.45 Aligned_cols=103 Identities=23% Similarity=0.192 Sum_probs=80.1
Q ss_pred EEEccCC-cCCCCCCCCCCCCCcCcEEeccC-CcCCCCCcccccCccccceEecccccccCCCCccccCccccceeeccc
Q 001171 169 YLDLSSN-AFTGEIPGNFSSKSQLQLINLSY-NSFSGEVPASVGQLQELEYLWLDSNHLYGTLPSAISNCSSLVHLSAED 246 (1133)
Q Consensus 169 ~L~Ls~N-~~~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 246 (1133)
.++++++ ++++ +|. |..+++|++|+|++ |+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 7774 666 88888888888885 888877777788888888888888888877777788888888888888
Q ss_pred cccCCCCCCcccCcCcccEEEcccCCcc
Q 001171 247 NVLKGLIPGTIGRISTLQVLSLSRNELT 274 (1133)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 274 (1133)
|+|+++++..|..++ |+.|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888877666666665 888888888776
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=5.8e-11 Score=135.15 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=40.6
Q ss_pred ccCCCCccEEEecC-CcccCCCccccccccccCeeecCCCcccCcCchhhhccCCCcEEEeecCCCCccCCccccCcccc
Q 001171 599 LGACSALEVLELRS-NHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCSSLVSLTLDMNSLSGRIPESFSKLSNL 677 (1133)
Q Consensus 599 l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 677 (1133)
+..+++|++|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444444444443 444443334444444444444444444444444444444444444444444433333333333 4
Q ss_pred ccccccccccc
Q 001171 678 TTLNLSTNRLS 688 (1133)
Q Consensus 678 ~~L~Ls~N~l~ 688 (1133)
+.|+|++|++.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 55555555444
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.08 E-value=2.9e-10 Score=123.68 Aligned_cols=141 Identities=10% Similarity=0.039 Sum_probs=109.5
Q ss_pred HHhcCCCcccccccccceeEEEEEECCceEEEEEEcccCC-cCHHHHHHHHHHHhhcc-CCCeeeEEEEEeCCCCcEEEE
Q 001171 834 EATRQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGT-IDENTFRKEAEALGKVK-HRNLTVLRGYYAGPPDVRLLV 911 (1133)
Q Consensus 834 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~-hpniv~l~~~~~~~~~~~~lV 911 (1133)
.....|++...++.|+++.||++... +..+++|+..... .....+.+|+++++.+. +..+.++++++... ...|+|
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~-~~~~lv 88 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHD-GWSNLL 88 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEET-TEEEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecC-CceEEE
Confidence 34567988899999999999999755 6789999986421 23456899999999984 56677888887654 456999
Q ss_pred EeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhc-----------------------------------
Q 001171 912 YDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHS----------------------------------- 956 (1133)
Q Consensus 912 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~----------------------------------- 956 (1133)
|||++|.++.+... +......++.+++++++.||+
T Consensus 89 ~e~i~G~~l~~~~~----------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (263)
T 3tm0_A 89 MSEADGVLCSEEYE----------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENW 158 (263)
T ss_dssp EECCSSEEHHHHCC----------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGG
T ss_pred EEecCCeehhhccC----------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccc
Confidence 99999999876521 122334678899999999998
Q ss_pred ------------------------CCceecccCccceeeCCCCceEEeccCccc
Q 001171 957 ------------------------LDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 957 ------------------------~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
.+++|+|++|.||+++++..+.|+||+.+.
T Consensus 159 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 159 EEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp STTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 448999999999999876556799999763
No 407
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.04 E-value=1.9e-08 Score=115.81 Aligned_cols=81 Identities=9% Similarity=0.084 Sum_probs=43.3
Q ss_pred CccccccEEeccCCcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCCcccccCchhhccCCCccE
Q 001171 312 RCVSVLEVLDLQNNRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANNSLSGLVPDEIAKCSLLQM 391 (1133)
Q Consensus 312 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 391 (1133)
...++|+.+.+. ..++.|...+|.+|.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++.+...+|..+ +|+.
T Consensus 43 ~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSE
T ss_pred ccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccc
Confidence 344556666664 3466666666666666666666544 443444556555 4555555433 333333444433 5666
Q ss_pred EEccCC
Q 001171 392 FDLEGN 397 (1133)
Q Consensus 392 L~Ls~N 397 (1133)
+++..+
T Consensus 118 i~lp~~ 123 (379)
T 4h09_A 118 FEFPGA 123 (379)
T ss_dssp EECCTT
T ss_pred ccCCCc
Confidence 655543
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=1.3e-08 Score=117.10 Aligned_cols=147 Identities=10% Similarity=0.086 Sum_probs=77.0
Q ss_pred CCCcCCcccccEEeccccCCCCCCChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCccccccc
Q 001171 500 PGSIGSLMRLTTLDLSNQNLSGELPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYGFLR 579 (1133)
Q Consensus 500 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 579 (1133)
...+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++......|..+.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 334444555555555433 22234445555555665555443 44344455556666666665433 3334444555666
Q ss_pred ccceeecccCccCCCCCccccCCCCccEEEecCCcccCCCccccccccccCeeecCCCcccCcCchhhhccC
Q 001171 580 SLVFLSLSHNQISGMIPAELGACSALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNKLSGEIPKEISKCS 651 (1133)
Q Consensus 580 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 651 (1133)
+|+.+.+.++.++......|..+.+|+.++|..+ ++......|.++++|+.+.+..+ ++.....+|.+++
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6666666666555444555666666666666543 43223344566666666666544 4433345555543
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.95 E-value=1.6e-09 Score=117.61 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=95.8
Q ss_pred CCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCe--eeEEEEEeCCCCcEEEEEecc
Q 001171 838 QFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNL--TVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni--v~l~~~~~~~~~~~~lV~e~~ 915 (1133)
.|.+..+.+.|..+.||++...+|..+++|..... ....+.+|+++++.+.+..+ .+++++.... +..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~-~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG--ALNELQDEAARLSWLATTGVPCAAVLDVVTEA-GRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS-SCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCCCCCCeEEEeccCC-CCCEEEEEec
Confidence 44444444566679999998777888999997653 23568899999999965554 4577777654 4459999999
Q ss_pred CCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCC-------------------------------------
Q 001171 916 PNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLD------------------------------------- 958 (1133)
Q Consensus 916 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~------------------------------------- 958 (1133)
+|.++. ... . ....++.++++.++.||+..
T Consensus 98 ~G~~l~--~~~--------~---~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (264)
T 1nd4_A 98 PGQDLL--SSH--------L---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQG 164 (264)
T ss_dssp SSEETT--TSC--------C---CHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTT
T ss_pred CCcccC--cCc--------C---CHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccC
Confidence 987763 110 1 12245666777777777543
Q ss_pred ---------------------ceecccCccceeeCCCCceEEeccCccc
Q 001171 959 ---------------------MVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 959 ---------------------ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
++|+|++|.||+++++..+.++||+.+.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 165 LAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp CCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred ccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 9999999999999877666799999763
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=4.9e-10 Score=126.68 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=33.5
Q ss_pred CChhccCCCCCcEeeccCCcccccCCCCCCCCccCcEEEcccccccCCCCcccc--cccccceeecc
Q 001171 523 LPIELFGLPSLQVVSLEENNLSGDVPEGFSSLVGLQYLNLSDNAFTGDIPATYG--FLRSLVFLSLS 587 (1133)
Q Consensus 523 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls 587 (1133)
+...+..+|+|+.|+|++|.-. .++. +. +++|+.|+|..|.++......+. .+++|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344556677777777766211 1222 22 56677777766666533333332 45666666664
No 411
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.91 E-value=2.5e-11 Score=129.90 Aligned_cols=149 Identities=22% Similarity=0.275 Sum_probs=78.6
Q ss_pred CCCccceeeeCCC--ceEEEeeCC---cccCcccch-hhcccccCcEEEcccCcccCCCCc-cccCCCCcce--EeccCC
Q 001171 59 APCDWRGIVCYNN--RVRELRLPR---LQLAGRLTD-QLADLHELRKLSLHSNHLNGSIPA-SLHQCSLLRA--VYLQYN 129 (1133)
Q Consensus 59 ~~c~w~gv~c~~~--~v~~l~l~~---~~l~g~~~~-~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~--L~L~~n 129 (1133)
..|.|.|+.|+.+ +|+.+..++ .++.|.+.+ .+..++. .|....|.-++.++- .+...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 3589999999853 776666655 455666643 3333333 222222222221111 1333333333 344444
Q ss_pred cccCcCCCccccccchhhhhhcccccCCCccCccCCcceEEEccCCcCCC--CCCCCCCCCCcCcEEeccCCcCCCCCcc
Q 001171 130 SFSGHLPLSIFNLTNLLVLNVAHNLLSGKISADISPSLRYLDLSSNAFTG--EIPGNFSSKSQLQLINLSYNSFSGEVPA 207 (1133)
Q Consensus 130 ~~~g~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~Ls~N~~~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 207 (1133)
+.. .++..+ .+...-.++|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. .
T Consensus 154 ~~~-~~~~~l------------------~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~ 212 (267)
T 3rw6_A 154 RRS-CMAATL------------------RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R 212 (267)
T ss_dssp SHH-HHHHHH------------------HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G
T ss_pred HHH-HHHHHH------------------HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h
Confidence 221 011000 0000112467777777777776 4456666777788888888877754 2
Q ss_pred cccCcc--ccceEecccccccCCCC
Q 001171 208 SVGQLQ--ELEYLWLDSNHLYGTLP 230 (1133)
Q Consensus 208 ~~~~l~--~L~~L~L~~N~l~~~~p 230 (1133)
.+..+. +|++|+|++|.+.+.+|
T Consensus 213 ~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 213 ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhhhcccCCcceEEccCCcCccccC
Confidence 344444 77777777777766555
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=3.9e-10 Score=127.51 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=85.0
Q ss_pred CCCCCccCcEEEcccccccCCCCcccccccccceeecccCccCCCCCcccc--CCCCccEEEecC--CcccCC-----Cc
Q 001171 550 GFSSLVGLQYLNLSDNAFTGDIPATYGFLRSLVFLSLSHNQISGMIPAELG--ACSALEVLELRS--NHFTGN-----IP 620 (1133)
Q Consensus 550 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~--N~l~~~-----~p 620 (1133)
.+..+++|+.|+|++|.-. .++. + .+++|++|+|..|.++......+. .+++|+.|+|+. |...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3455677888888776311 1222 3 267788888877776644333343 577788877753 221111 11
Q ss_pred ccc--ccccccCeeecCCCcccCcCchhhh---ccCCCcEEEeecCCCCccC----CccccCcccccccccccccccccC
Q 001171 621 VDI--SHLSRIKKLDLGQNKLSGEIPKEIS---KCSSLVSLTLDMNSLSGRI----PESFSKLSNLTTLNLSTNRLSGAI 691 (1133)
Q Consensus 621 ~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~ 691 (1133)
..+ ..+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+++.. +..+..+++|+.|+|++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 112 2356677777777766654444443 3566777777776666532 223344566666667666665443
Q ss_pred Cccccc-cccCccccccccc
Q 001171 692 PADLAL-ISSLRYLNLSRNN 710 (1133)
Q Consensus 692 p~~l~~-l~~L~~L~ls~N~ 710 (1133)
-..+.. + ...++++.|+
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 1 2345666555
No 413
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.79 E-value=9.8e-09 Score=117.14 Aligned_cols=139 Identities=13% Similarity=0.182 Sum_probs=101.9
Q ss_pred cccccccccceeEEEEEECCceEEEEEEcc--cCC--cCHHHHHHHHHHHhhccC--CCeeeEEEEEeCCC--CcEEEEE
Q 001171 841 EENVLSRGRYGLIFKASYQDGMVLSIRRLR--DGT--IDENTFRKEAEALGKVKH--RNLTVLRGYYAGPP--DVRLLVY 912 (1133)
Q Consensus 841 ~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~--~~~--~~~~~~~~E~~~l~~l~h--pniv~l~~~~~~~~--~~~~lV~ 912 (1133)
..+.++.|.++.||+....+ ..+++|+.. .+. .....+.+|+++++.+.+ ..+.+++.++.+.. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 45679999999999998764 577888876 332 124578899999999974 45677888776542 2358999
Q ss_pred eccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhc------------------------------------
Q 001171 913 DYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHS------------------------------------ 956 (1133)
Q Consensus 913 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~------------------------------------ 956 (1133)
||++|..+.+.. ...++...+..++.++++.|+.||+
T Consensus 121 e~v~G~~l~~~~-------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (359)
T 3dxp_A 121 EFVSGRVLWDQS-------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETES 193 (359)
T ss_dssp ECCCCBCCCCTT-------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSC
T ss_pred EecCCeecCCCc-------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcC
Confidence 999987653210 1225677788889999999999996
Q ss_pred ----------------------CCceecccCccceeeCCCCc--eEEeccCcccc
Q 001171 957 ----------------------LDMVHGDIKPQNVLFDADFE--AHLSEFGLDRL 987 (1133)
Q Consensus 957 ----------------------~~ivH~Dlkp~NIll~~~~~--~kl~Dfg~a~~ 987 (1133)
.+++|||+++.||+++.++. +.|.||+.+..
T Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 194 IPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred ChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 35899999999999997753 58999998864
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.63 E-value=6.8e-09 Score=115.42 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=112.9
Q ss_pred ccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhcc-CCCe--eeEEEEEeCCC--CcEEEEEeccC
Q 001171 842 ENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVK-HRNL--TVLRGYYAGPP--DVRLLVYDYMP 916 (1133)
Q Consensus 842 ~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-hpni--v~l~~~~~~~~--~~~~lV~e~~~ 916 (1133)
.+.++.|.+..||++. ..+++|+.... .....+.+|+++++.+. +..+ .+.+.+..... ...|+|||+++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~ 99 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIK 99 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccC
Confidence 3568899999999873 45778875432 23467899999999883 3332 23434332222 13378999999
Q ss_pred CCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhc----------------------------------------
Q 001171 917 NGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHS---------------------------------------- 956 (1133)
Q Consensus 917 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~---------------------------------------- 956 (1133)
|.++.+.... .++..++..++.++++.++.||+
T Consensus 100 G~~l~~~~~~-------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
T 3sg8_A 100 GVPLTPLLLN-------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKK 172 (304)
T ss_dssp CEECCHHHHH-------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CeECCccccc-------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHH
Confidence 9777543221 14455556666666666666664
Q ss_pred ------------------CCceecccCccceeeCC--CCceEEeccCcccccccCCCCCCCCCCC--CCC---------C
Q 001171 957 ------------------LDMVHGDIKPQNVLFDA--DFEAHLSEFGLDRLAIATPAEASSSTTP--IGS---------L 1005 (1133)
Q Consensus 957 ------------------~~ivH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~~~--~gt---------~ 1005 (1133)
..++|+|++|.||++++ ...+.++||+.+....+..+-....... .+. .
T Consensus 173 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y 252 (304)
T 3sg8_A 173 VDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHY 252 (304)
T ss_dssp HHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHc
Confidence 23799999999999988 4567899999886432211000000000 000 0
Q ss_pred CccC-ccccCCCCCCCCCchhHHHHHHHHHHhCCCCC
Q 001171 1006 GYVS-PEAASTGQPTKEADVYSFGIVLLEILTGRKPV 1041 (1133)
Q Consensus 1006 ~y~a-PE~~~~~~~~~~~DvwSlG~il~el~tg~~Pf 1041 (1133)
++.. |+.... .....+.|+++.++|.+.+|..+|
T Consensus 253 ~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 253 KHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp TCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0111 221110 012258999999999999998876
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=3.4e-08 Score=100.67 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=31.4
Q ss_pred cCCCcEEEeecCCCCcc----CCccccCccccccccc--ccccccccC----CccccccccCccccccccccc
Q 001171 650 CSSLVSLTLDMNSLSGR----IPESFSKLSNLTTLNL--STNRLSGAI----PADLALISSLRYLNLSRNNLE 712 (1133)
Q Consensus 650 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~~----p~~l~~l~~L~~L~ls~N~l~ 712 (1133)
.+.|++|+|++|.|+.. +...+...++|++|+| ++|.++... ...+...++|++|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555555432 2233444455566666 555555432 222333456666666666654
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=4.5e-08 Score=99.77 Aligned_cols=89 Identities=12% Similarity=0.224 Sum_probs=48.2
Q ss_pred cCCCCccEEEecCCcccCC----CccccccccccCeeecCCCcccCc----CchhhhccCCCcEEEe--ecCCCCccCC-
Q 001171 600 GACSALEVLELRSNHFTGN----IPVDISHLSRIKKLDLGQNKLSGE----IPKEISKCSSLVSLTL--DMNSLSGRIP- 668 (1133)
Q Consensus 600 ~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~~~- 668 (1133)
...++|++|+|++|+|... +...+...+.|++|+|++|.|++. +...+...+.|++|+| ++|.|+....
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3345555555555555421 222233445566666666666543 2344455566666666 6666665432
Q ss_pred ---ccccCccccccccccccccc
Q 001171 669 ---ESFSKLSNLTTLNLSTNRLS 688 (1133)
Q Consensus 669 ---~~~~~l~~L~~L~Ls~N~l~ 688 (1133)
+.+...++|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 23334466777777777664
No 417
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.28 E-value=1.3e-06 Score=97.68 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=91.6
Q ss_pred CCCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccC---C-CeeeEEEEEeCCCCcEEEEEe
Q 001171 838 QFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKH---R-NLTVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 838 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~h---p-niv~l~~~~~~~~~~~~lV~e 913 (1133)
.+...+.++.|....||+. |..+++|+..... ....+.+|+++++.+.+ + .+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~~-~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~-----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRDS-VRISQKRELELYRFLENCKLSYQIPAVVYQ-----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSHH-HHHHHHHHHHHHHHHTTSCCSSBCCCEEEE-----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcHH-HHHHHHHHHHHHHHHHhcCCCCCcceEEec-----CCcEEEEe
Confidence 5667788999999999998 6667888764322 23568999999999876 1 12334443 22389999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcC------------------------------------
Q 001171 914 YMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSL------------------------------------ 957 (1133)
Q Consensus 914 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~------------------------------------ 957 (1133)
|++|.++.+.... .++...+..++.++++.++.||+.
T Consensus 108 ~i~G~~l~~~~~~-------~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (320)
T 3r70_A 108 YIKGERITYEQYH-------KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQL 180 (320)
T ss_dssp CCCCBCCCHHHHT-------TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCccccccccc-------cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccc
Confidence 9999877532210 134444455555555555555521
Q ss_pred ---------------------------CceecccCccceeeCCCCceEEeccCcccc
Q 001171 958 ---------------------------DMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 958 ---------------------------~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.++|+|++|.||+++.+..+.|+||+.+..
T Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 181 LTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred ccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 259999999999999866679999998754
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=8.7e-08 Score=102.45 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=18.6
Q ss_pred cccccceeeccCceeec--ccCcccCCCCCCcEEEccCCcccc
Q 001171 337 NVTSLRVMDLSGNFFSG--NLPAAVGSLDKLEVLRVANNSLSG 377 (1133)
Q Consensus 337 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~ 377 (1133)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 34455555555555543 223333444444444444444443
No 419
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.19 E-value=5.7e-06 Score=91.59 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=53.8
Q ss_pred ccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCC---CeeeEEEEEeCCCCcEEEEEeccCCC
Q 001171 842 ENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHR---NLTVLRGYYAGPPDVRLLVYDYMPNG 918 (1133)
Q Consensus 842 ~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp---niv~l~~~~~~~~~~~~lV~e~~~~g 918 (1133)
.+.++.|....||+. |..+++|+-.. ......+.+|+++++.+.+. .+.+.+.+.....+..++||||++|.
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~-~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~ 98 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS-QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ 98 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS-HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC-chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence 456788888899998 56677787432 22346789999999999652 24455566544445568999999987
Q ss_pred CHHH
Q 001171 919 NLAT 922 (1133)
Q Consensus 919 sL~~ 922 (1133)
++.+
T Consensus 99 ~l~~ 102 (306)
T 3tdw_A 99 ILGE 102 (306)
T ss_dssp ECHH
T ss_pred ECch
Confidence 7765
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.12 E-value=1.3e-05 Score=87.47 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=59.5
Q ss_pred CcccccccccceeEEEEEECCceEEEEEEcccCC-cCHHHHHHHHHHHhhccCC---CeeeEEEEEeCCCCcEEEEEecc
Q 001171 840 DEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGT-IDENTFRKEAEALGKVKHR---NLTVLRGYYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 840 ~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp---niv~l~~~~~~~~~~~~lV~e~~ 915 (1133)
...+.|+.|.++.||++...+|+.+++|+..... .....+.+|++.++.+.+. .+.+++++. . .++||||+
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~-~~lvme~l 92 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----D-RTLAMEWV 92 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----T-TEEEEECC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----C-cEEEEEec
Confidence 3456799999999999998889999999975432 2346789999999999865 466676653 1 38999999
Q ss_pred CCCCH
Q 001171 916 PNGNL 920 (1133)
Q Consensus 916 ~~gsL 920 (1133)
+++++
T Consensus 93 ~g~~~ 97 (288)
T 3d1u_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98764
No 421
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=97.93 E-value=2.2e-05 Score=88.95 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=56.2
Q ss_pred CCcccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCC--eeeEEEEEeCCCCcEEEEEeccC
Q 001171 839 FDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRN--LTVLRGYYAGPPDVRLLVYDYMP 916 (1133)
Q Consensus 839 ~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn--iv~l~~~~~~~~~~~~lV~e~~~ 916 (1133)
....+.++.|....+|+... +|..+++|..... ..+.+|+.+++.+.... +.++++++.......++||||++
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~ 117 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQ 117 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecC
Confidence 34456788999999999976 4788888887532 36889999999986533 34566666554355699999998
Q ss_pred CCCH
Q 001171 917 NGNL 920 (1133)
Q Consensus 917 ~gsL 920 (1133)
|.++
T Consensus 118 G~~l 121 (362)
T 3ovc_A 118 GVTL 121 (362)
T ss_dssp SEET
T ss_pred CCCc
Confidence 7544
No 422
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=97.93 E-value=2.7e-05 Score=84.56 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=87.7
Q ss_pred ccccccce-eEEEEEEC-CceEEEEEEcccCCcCHHHHHHHHHHHhhcc-CCCeeeEEEEEeCCCCcEEEEEeccCCCCH
Q 001171 844 VLSRGRYG-LIFKASYQ-DGMVLSIRRLRDGTIDENTFRKEAEALGKVK-HRNLTVLRGYYAGPPDVRLLVYDYMPNGNL 920 (1133)
Q Consensus 844 ~lg~G~~g-~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-hpniv~l~~~~~~~~~~~~lV~e~~~~gsL 920 (1133)
.+..|..| .||+...+ ++..+++|+-+.+ ....+.+|+++++.+. +--+-++++++... +..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~--~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~-~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS--VANDVTDEMVRLNWLTAFMPLPTIKHFIRTP-DDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH--HHHHHHHHHHHHHHHTTTSCCCCEEEEEEET-TEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC--CHhHHHHHHHHHHHhccCCCcCeEEEEEEEC-CeEEEEEEeeCCccc
Confidence 34556555 68998765 4567888886543 2457889999998884 22244566776655 455999999999887
Q ss_pred HHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhc--------------------------------------------
Q 001171 921 ATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHS-------------------------------------------- 956 (1133)
Q Consensus 921 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~-------------------------------------------- 956 (1133)
.+..... ......++.++++.++.||+
T Consensus 108 ~~~~~~~---------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (272)
T 4gkh_A 108 FQVLEEY---------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ 178 (272)
T ss_dssp HHHHHHC---------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred cccccCC---------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence 7654321 11222344444444444442
Q ss_pred --------------CCceecccCccceeeCCCCceEEeccCccc
Q 001171 957 --------------LDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 957 --------------~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
..++|+|+.+.||+++.++.+-|+||+.+.
T Consensus 179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 127899999999999987777799999763
No 423
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=7e-06 Score=81.17 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=17.0
Q ss_pred ccceeecccCccCCCCCccccCCCCccEEEecCC
Q 001171 580 SLVFLSLSHNQISGMIPAELGACSALEVLELRSN 613 (1133)
Q Consensus 580 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 613 (1133)
+|++||++++.|++..-..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555555444444444555555555554
No 424
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.76 E-value=2.9e-05 Score=88.06 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=54.4
Q ss_pred cccc-ccccceeEEEEEEC-------CceEEEEEEcccCC---c-CHHHHHHHHHHHhhcc-C--CCeeeEEEEEeCCC-
Q 001171 842 ENVL-SRGRYGLIFKASYQ-------DGMVLSIRRLRDGT---I-DENTFRKEAEALGKVK-H--RNLTVLRGYYAGPP- 905 (1133)
Q Consensus 842 ~~~l-g~G~~g~Vy~~~~~-------~g~~vavK~~~~~~---~-~~~~~~~E~~~l~~l~-h--pniv~l~~~~~~~~- 905 (1133)
.+.| +.|....+|+.... ++..+++|...... . ....+.+|+++++.+. + -.+.+++.++.+..
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88999999998664 26778888865432 1 2356788999999884 3 24556777765432
Q ss_pred -CcEEEEEeccCCCCH
Q 001171 906 -DVRLLVYDYMPNGNL 920 (1133)
Q Consensus 906 -~~~~lV~e~~~~gsL 920 (1133)
...++||||++|..+
T Consensus 105 ~g~~~~v~e~l~G~~l 120 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVP 120 (357)
T ss_dssp TSSCEEEEECCCCBCC
T ss_pred cCCceEEEEecCCCCh
Confidence 234899999987553
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.1e-05 Score=79.81 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=50.7
Q ss_pred CCccEEEecCCcccCCCccccccccccCeeecCCCc-ccCcCchhhhcc----CCCcEEEeecCC-CCccCCccccCccc
Q 001171 603 SALEVLELRSNHFTGNIPVDISHLSRIKKLDLGQNK-LSGEIPKEISKC----SSLVSLTLDMNS-LSGRIPESFSKLSN 676 (1133)
Q Consensus 603 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 676 (1133)
-.|+.||++++.++...-..+..+++|+.|+|++|. |++..-..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665444455666666666666663 555444455543 356666666653 66555555666666
Q ss_pred cccccccccc
Q 001171 677 LTTLNLSTNR 686 (1133)
Q Consensus 677 L~~L~Ls~N~ 686 (1133)
|+.|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666664
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.64 E-value=0.00019 Score=82.63 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=48.7
Q ss_pred ccccccccceeEEEEEEC-CceEEEEEEcccCC--------cCHHHHHHHHHHHhhccC--CCee-eEEEEEeCCCCcEE
Q 001171 842 ENVLSRGRYGLIFKASYQ-DGMVLSIRRLRDGT--------IDENTFRKEAEALGKVKH--RNLT-VLRGYYAGPPDVRL 909 (1133)
Q Consensus 842 ~~~lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~--------~~~~~~~~E~~~l~~l~h--pniv-~l~~~~~~~~~~~~ 909 (1133)
.+.+|.|.++.||++... +++.+++|...... ...+.+..|+++++.+.. |..+ +++.+ .. +. .+
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~-d~-~~-~~ 111 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS-DT-EM-AV 111 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE-ET-TT-TE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE-cC-Cc-cE
Confidence 467999999999999754 46789999764321 123567889999988843 3333 44443 32 23 38
Q ss_pred EEEeccCCC
Q 001171 910 LVYDYMPNG 918 (1133)
Q Consensus 910 lV~e~~~~g 918 (1133)
+||||+++.
T Consensus 112 lvmE~l~g~ 120 (397)
T 2olc_A 112 TVMEDLSHL 120 (397)
T ss_dssp EEECCCTTS
T ss_pred EEEEeCCCc
Confidence 999999763
No 427
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.61 E-value=0.00021 Score=80.39 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=79.0
Q ss_pred cccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhcc-----CCCeeeEE-E-EEeCCCCcEEEEEecc
Q 001171 843 NVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVK-----HRNLTVLR-G-YYAGPPDVRLLVYDYM 915 (1133)
Q Consensus 843 ~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~-----hpniv~l~-~-~~~~~~~~~~lV~e~~ 915 (1133)
+.|+.|..+.||+....+|. +++|+... +...+..|+++++.+. .|.++... | ++....+..++||||+
T Consensus 38 ~~l~gG~~n~~~~v~~~~~~-~vlk~~~~---~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i 113 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSGA-VCLKRIHR---PEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWI 113 (346)
T ss_dssp EECC----CEEEEEEETTEE-EEEEEECS---CHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECC
T ss_pred eeccccccCcEEEEEeCCCC-EEEEecCC---CHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEee
Confidence 45666788999999877654 88898865 2345566777776663 24444310 0 0111123458999999
Q ss_pred CCCCHH--------------HHHHhhccC---C-C-----CCCChHHHH-------------------------------
Q 001171 916 PNGNLA--------------TLLQEASHQ---D-G-----HVLNWPMRH------------------------------- 941 (1133)
Q Consensus 916 ~~gsL~--------------~~l~~~~~~---~-~-----~~l~~~~~~------------------------------- 941 (1133)
+|..+. ..++..... . . ....|....
T Consensus 114 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (346)
T 2q83_A 114 EGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEID 193 (346)
T ss_dssp CCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 885431 122222110 0 0 011232110
Q ss_pred HHHHHHHHHHHHHh-------------cCCceecccCccceeeCCCCceEEeccCccc
Q 001171 942 LISLGLARGLSFLH-------------SLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 942 ~i~~~ia~~L~~LH-------------~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
.+...+..++++|+ ..+++|+|+++.||+++.++.+.++||+.+.
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 194 GFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 01112334566665 3579999999999999888899999999763
No 428
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.23 E-value=6.1e-05 Score=75.94 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=9.2
Q ss_pred ccccccCcccccccccc
Q 001171 695 LALISSLRYLNLSRNNL 711 (1133)
Q Consensus 695 l~~l~~L~~L~ls~N~l 711 (1133)
+..-+.|+.|+++.|.+
T Consensus 153 L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 153 IEENESLLRVGISFASM 169 (197)
T ss_dssp HHHCSSCCEEECCCCCH
T ss_pred HHhCCCcCeEeccCCCc
Confidence 34445666666665543
No 429
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.19 E-value=5.9e-05 Score=76.05 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=28.9
Q ss_pred ccccceeecccC-ccCCC----CCccccCCCCccEEEecCCcccCC----CccccccccccCeeecCCCcccC
Q 001171 578 LRSLVFLSLSHN-QISGM----IPAELGACSALEVLELRSNHFTGN----IPVDISHLSRIKKLDLGQNKLSG 641 (1133)
Q Consensus 578 l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 641 (1133)
-+.|++|+|++| +|.+. +...+..-+.|+.|+|++|+|... +...+...+.|+.|+|++|.|++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 345555555553 54432 122233344555555555555421 22223334445555555555543
No 430
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.00032 Score=66.12 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=43.0
Q ss_pred hhhhcccccC-CCccCccCCcceEEEccCCcCCCCCCCCCCCCCcCcEEeccCCcCC
Q 001171 147 VLNVAHNLLS-GKISADISPSLRYLDLSSNAFTGEIPGNFSSKSQLQLINLSYNSFS 202 (1133)
Q Consensus 147 ~L~l~~N~l~-~~~~~~~~~~l~~L~Ls~N~~~~~~p~~~~~l~~L~~L~ls~N~l~ 202 (1133)
+++.+++.|+ ..+|..+|++|++|+|++|+|+...++.|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666665 4677788888888888888888776777788888888888888665
No 431
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=96.97 E-value=0.0034 Score=68.45 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=56.3
Q ss_pred cCCCcccccccccceeEEEEEECCceEEEEEEcccCCc-CHHHHHHHHHHHhhccCC---CeeeEEEEEeCCCCcEEEEE
Q 001171 837 RQFDEENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTI-DENTFRKEAEALGKVKHR---NLTVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 837 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp---niv~l~~~~~~~~~~~~lV~ 912 (1133)
.+..-.+.+|.|..+.||+.+..+|+.|++|+-..... ....|.+|++.|+.+... -+.+.+++. . .++||
T Consensus 15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~-~~lv~ 89 (288)
T 3f7w_A 15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----D-RTLAM 89 (288)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----T-TEEEE
T ss_pred CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----C-ceEEE
Confidence 34555678999999999999999999999998764332 245789999999988422 233344432 1 27999
Q ss_pred eccCCCC
Q 001171 913 DYMPNGN 919 (1133)
Q Consensus 913 e~~~~gs 919 (1133)
||++++.
T Consensus 90 e~l~~~~ 96 (288)
T 3f7w_A 90 EWVDERP 96 (288)
T ss_dssp ECCCCCC
T ss_pred EeecccC
Confidence 9998754
No 432
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=96.94 E-value=0.003 Score=73.09 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=47.8
Q ss_pred hcCCceecccCccceeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCC---CCCCCchhHHHHHH
Q 001171 955 HSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQ---PTKEADVYSFGIVL 1031 (1133)
Q Consensus 955 H~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlG~il 1031 (1133)
+...++|+|++|.||+++.++ ++++||+.+....+.-+-...... -...|.+|+...... .....++......+
T Consensus 230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (420)
T 2pyw_A 230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYLGN--LILAFFAQDGHATQENDRKEYKQWILRTIEQT 306 (420)
T ss_dssp BCCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHHHH--HHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHHHH--HHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 566799999999999998876 999999987543211110000000 012456666553111 11223455777788
Q ss_pred HHHHhCC
Q 001171 1032 LEILTGR 1038 (1133)
Q Consensus 1032 ~el~tg~ 1038 (1133)
|+.+.+.
T Consensus 307 ~~~y~~~ 313 (420)
T 2pyw_A 307 WNLFNKR 313 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777653
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.92 E-value=0.002 Score=70.86 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=42.9
Q ss_pred ccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCee-eEEEEEeCCCCcEEEEEecc-CCCC
Q 001171 842 ENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLT-VLRGYYAGPPDVRLLVYDYM-PNGN 919 (1133)
Q Consensus 842 ~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv-~l~~~~~~~~~~~~lV~e~~-~~gs 919 (1133)
.+.|+.|....+|+. ..+++|+...+........+|+++++.+....+. +++++..+ . .++|+||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~--~-~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVDPA--T-GVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEECTT--T-CCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEECC--C-CEEEEeecCCCcc
Confidence 577889999999999 4577777654322222346788888887533333 44443322 2 26899999 5533
No 434
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.89 E-value=0.0041 Score=68.96 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=84.9
Q ss_pred ccHHHHHHHhcCCCc-----ccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCe--eeEEE
Q 001171 827 ITYVETLEATRQFDE-----ENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNL--TVLRG 899 (1133)
Q Consensus 827 ~~~~~~~~~~~~~~~-----~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni--v~l~~ 899 (1133)
++..+......+|.+ .+.|+.|....+|+....+| .+++|..... ...+.+..|+++++.+....+ .+++.
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~-~~~~~l~~e~~~l~~L~~~g~~vP~~~~ 84 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR-VEKNDLPFFLGLMQHLAAKGLSCPLPLP 84 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC----CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC-CCHHHHHHHHHHHHHHHHCCCCCCcccC
Confidence 344445555555655 24567788899999987666 5778887642 233567788888888742222 22221
Q ss_pred EEe-----CCCCcEEEEEeccCCCCHH--------------HHHHhhccC-CCC---CC---ChHHHHH-----------
Q 001171 900 YYA-----GPPDVRLLVYDYMPNGNLA--------------TLLQEASHQ-DGH---VL---NWPMRHL----------- 942 (1133)
Q Consensus 900 ~~~-----~~~~~~~lV~e~~~~gsL~--------------~~l~~~~~~-~~~---~l---~~~~~~~----------- 942 (1133)
... ...+..+++|+|++|..+. ..++..... ... .. .|.....
T Consensus 85 ~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 164 (322)
T 2ppq_A 85 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK 164 (322)
T ss_dssp BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred CCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhh
Confidence 100 0113348999999875421 112221110 000 00 1211000
Q ss_pred -HHHHHHHHHHHHh-------cCCceecccCccceeeCCCCceEEeccCccc
Q 001171 943 -ISLGLARGLSFLH-------SLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 943 -i~~~ia~~L~~LH-------~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
+...+.+.+++++ ..+++|+|+.+.||+++++..+.++||+.+.
T Consensus 165 ~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 165 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 0111334455554 2369999999999999887666899998763
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.88 E-value=0.0043 Score=68.99 Aligned_cols=140 Identities=10% Similarity=0.145 Sum_probs=81.1
Q ss_pred cccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCC--eeeEEEEEeC-----CCCcEEEEEecc
Q 001171 843 NVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRN--LTVLRGYYAG-----PPDVRLLVYDYM 915 (1133)
Q Consensus 843 ~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn--iv~l~~~~~~-----~~~~~~lV~e~~ 915 (1133)
..++ |....||+....+|+.+++|...........+..|.++++.+.... +.+++.. .. ..+..++||||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~-~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAF-NGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCB-TTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeec-CCcEEEEECCEEEEEEEec
Confidence 3466 7888999987777878999998754445677888999988884222 3333332 11 123447899999
Q ss_pred CCCCH-----HH------H---HHhhccC-C---CCCCChHHH----------------------HHHHHHHHHHHHHH-
Q 001171 916 PNGNL-----AT------L---LQEASHQ-D---GHVLNWPMR----------------------HLISLGLARGLSFL- 954 (1133)
Q Consensus 916 ~~gsL-----~~------~---l~~~~~~-~---~~~l~~~~~----------------------~~i~~~ia~~L~~L- 954 (1133)
+|..+ .. . ++..... . ....++... ...+..++..++..
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 87432 11 1 2221110 0 011121110 01111122222222
Q ss_pred ---hcCCceecccCccceeeCCCCceEEeccCccc
Q 001171 955 ---HSLDMVHGDIKPQNVLFDADFEAHLSEFGLDR 986 (1133)
Q Consensus 955 ---H~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 986 (1133)
+...++|+|+++.||+++ + .+.++||+.+.
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 234589999999999999 4 88999998764
No 436
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=96.76 E-value=0.0064 Score=66.71 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=56.7
Q ss_pred ccccccccceeEEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhcc---CCCeeeEEEEEeCCCCcEEEEEeccCCC
Q 001171 842 ENVLSRGRYGLIFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVK---HRNLTVLRGYYAGPPDVRLLVYDYMPNG 918 (1133)
Q Consensus 842 ~~~lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~---hpniv~l~~~~~~~~~~~~lV~e~~~~g 918 (1133)
.+.|+.|....+|+.... +..+++|+.... ....+.+|++.|+.+. ...+.+++++.... +..++||||+++.
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~--~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~-g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS--YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ-GHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEGG--GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS-SEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCcc--cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC-CceEEEEEeccCC
Confidence 466899999999999764 667888887543 3567899999999884 24566777776654 4569999999987
Q ss_pred CH
Q 001171 919 NL 920 (1133)
Q Consensus 919 sL 920 (1133)
.+
T Consensus 117 ~~ 118 (312)
T 3jr1_A 117 KN 118 (312)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 437
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.73 E-value=0.0047 Score=68.87 Aligned_cols=140 Identities=9% Similarity=0.078 Sum_probs=72.0
Q ss_pred ccccccccee-EEEEEECCceEEEEEEcccCCcCHHHHHHHHHHHhhccCCC--eeeEEEEEeCCCCcEEEEEeccCCCC
Q 001171 843 NVLSRGRYGL-IFKASYQDGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRN--LTVLRGYYAGPPDVRLLVYDYMPNGN 919 (1133)
Q Consensus 843 ~~lg~G~~g~-Vy~~~~~~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn--iv~l~~~~~~~~~~~~lV~e~~~~gs 919 (1133)
+.|+.|.... +|+....+|..+++|...... ...+..|+++++.+.... +.+++.+... .. ++|||++.+..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~--~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~--~g-~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE--GGDTQPFVDLAQYLRNLDISAPEIYAEEHA--RG-LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT--TCCSHHHHHHHHHHHHTTCBCCCEEEEETT--TT-EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC--CccccHHHHHHHHHHhCCCCCCceeeecCC--CC-EEEEeeCCCcc
Confidence 3455554444 667765446667777654322 134566788877774222 3345554322 22 78999997767
Q ss_pred HHHHHHhhc------------------cCC-C--CCCChHHHH---------H-----------HHHHHHHHHHHH----
Q 001171 920 LATLLQEAS------------------HQD-G--HVLNWPMRH---------L-----------ISLGLARGLSFL---- 954 (1133)
Q Consensus 920 L~~~l~~~~------------------~~~-~--~~l~~~~~~---------~-----------i~~~ia~~L~~L---- 954 (1133)
+.+++.... ... . ..++..... . ....+...++.+
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 665443211 000 0 011111000 0 001111222333
Q ss_pred --hcCCceecccCccceeeCCC----CceEEeccCcccc
Q 001171 955 --HSLDMVHGDIKPQNVLFDAD----FEAHLSEFGLDRL 987 (1133)
Q Consensus 955 --H~~~ivH~Dlkp~NIll~~~----~~~kl~Dfg~a~~ 987 (1133)
+...++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 23469999999999999875 6789999998754
No 438
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.49 E-value=0.0076 Score=68.01 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=78.8
Q ss_pred cccccccceeEEEEEEC--------CceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCe-eeEEEEEeCCCCcEEEEEe
Q 001171 843 NVLSRGRYGLIFKASYQ--------DGMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNL-TVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 843 ~~lg~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-v~l~~~~~~~~~~~~lV~e 913 (1133)
+.+..|-...+|+.... ++..+++|+..........+.+|.++++.+....+ .++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~-----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE-----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT-----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC-----ccEEE
Confidence 45767888899999764 24678888864333345667799999988853233 355555532 38999
Q ss_pred ccCCCCHH--------------HHH---HhhccCCCCCCC--hHHHHHHHHHHH-------------------HHHHHHh
Q 001171 914 YMPNGNLA--------------TLL---QEASHQDGHVLN--WPMRHLISLGLA-------------------RGLSFLH 955 (1133)
Q Consensus 914 ~~~~gsL~--------------~~l---~~~~~~~~~~l~--~~~~~~i~~~ia-------------------~~L~~LH 955 (1133)
|++|.++. +.+ +.....-..... |.+..++..++. ..++.|.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 99874432 111 111111111122 233333333321 1223332
Q ss_pred ----c----CCceecccCccceeeCCC----CceEEeccCccc
Q 001171 956 ----S----LDMVHGDIKPQNVLFDAD----FEAHLSEFGLDR 986 (1133)
Q Consensus 956 ----~----~~ivH~Dlkp~NIll~~~----~~~kl~Dfg~a~ 986 (1133)
. ..++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 2 248999999999999876 689999999874
No 439
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.0042 Score=58.41 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=38.2
Q ss_pred eEeccccccc-CCCCccccCccccceeeccccccCCCCCCcccCcCcccEEEcccCCcc
Q 001171 217 YLWLDSNHLY-GTLPSAISNCSSLVHLSAEDNVLKGLIPGTIGRISTLQVLSLSRNELT 274 (1133)
Q Consensus 217 ~L~L~~N~l~-~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 274 (1133)
.++.+++.++ ..+|..+. ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5556666654 24554433 35777777777777777777788888888888888764
No 440
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.25 E-value=0.011 Score=68.11 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=47.9
Q ss_pred ccccccccceeEEEEEECC--------ceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCe-eeEEEEEeCCCCcEEEEE
Q 001171 842 ENVLSRGRYGLIFKASYQD--------GMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNL-TVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 842 ~~~lg~G~~g~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-v~l~~~~~~~~~~~~lV~ 912 (1133)
.+.|+.|-...||++...+ +..+++|+.... ...+.+.+|+.+++.+...++ .++++.+.+ .+||
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~-----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ETESHLVAESVIFTLLSERHLGPKLYGIFSG-----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT-----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC-----CEEE
Confidence 3567888889999998753 467888887432 122556689999998853333 455665432 4899
Q ss_pred eccCC
Q 001171 913 DYMPN 917 (1133)
Q Consensus 913 e~~~~ 917 (1133)
||++|
T Consensus 152 e~l~G 156 (429)
T 1nw1_A 152 EYIPS 156 (429)
T ss_dssp CCCCE
T ss_pred EEeCC
Confidence 99976
No 441
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.05 E-value=0.0064 Score=68.89 Aligned_cols=72 Identities=8% Similarity=0.069 Sum_probs=43.4
Q ss_pred cccccccceeEEEEEECCc---------eEEEEEEcccCCcCHHHHHHHHHHHhhccCCCe-eeEEEEEeCCCCcEEEEE
Q 001171 843 NVLSRGRYGLIFKASYQDG---------MVLSIRRLRDGTIDENTFRKEAEALGKVKHRNL-TVLRGYYAGPPDVRLLVY 912 (1133)
Q Consensus 843 ~~lg~G~~g~Vy~~~~~~g---------~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-v~l~~~~~~~~~~~~lV~ 912 (1133)
+.++.|....+|+....++ ..+++|+.............|.++++.+....+ .++++.. . . ++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~-~---~-~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTF-N---G-GRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEE-T---T-EEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEec-C---C-cEEE
Confidence 4577888889999977542 678888765432211234678888888853333 3555443 1 1 6899
Q ss_pred eccCCCC
Q 001171 913 DYMPNGN 919 (1133)
Q Consensus 913 e~~~~gs 919 (1133)
||++|..
T Consensus 114 e~i~G~~ 120 (369)
T 3c5i_A 114 EWLYGDP 120 (369)
T ss_dssp ECCCSEE
T ss_pred EEecCCc
Confidence 9998743
No 442
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=95.77 E-value=0.045 Score=63.40 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=46.2
Q ss_pred cccccccceeEEEEEECC-ceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCee-eEEEEEeCCCCcEEEEEeccCCC
Q 001171 843 NVLSRGRYGLIFKASYQD-GMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNLT-VLRGYYAGPPDVRLLVYDYMPNG 918 (1133)
Q Consensus 843 ~~lg~G~~g~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv-~l~~~~~~~~~~~~lV~e~~~~g 918 (1133)
+.|+.|-...+|++...+ +..+++|+........-...+|..+++.+...+++ ++++++. + ..||||++|.
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~---~--G~v~e~I~G~ 186 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFT---N--GRIEEFMDGY 186 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEET---T--EEEEECCCSE
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeC---C--eEEEEeeCCc
Confidence 568888889999998865 57788887643321111226899999999655553 5666552 2 3599999873
No 443
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.85 E-value=0.038 Score=63.15 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=46.8
Q ss_pred cccccccceeEEEEEECC--------ceEEEEEEcccCCcCHHHHHHHHHHHhhccCCCe-eeEEEEEeCCCCcEEEEEe
Q 001171 843 NVLSRGRYGLIFKASYQD--------GMVLSIRRLRDGTIDENTFRKEAEALGKVKHRNL-TVLRGYYAGPPDVRLLVYD 913 (1133)
Q Consensus 843 ~~lg~G~~g~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-v~l~~~~~~~~~~~~lV~e 913 (1133)
+.+..|-...+|+....+ +..+++++........-...+|.++++.+....+ .++++.+. -+.|||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~-----~~~I~e 150 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFP-----EGRIEE 150 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEET-----TEEEEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEcC-----CCEEEE
Confidence 457778888999998763 5778888865433222234679999988853233 34444332 178999
Q ss_pred ccCCCC
Q 001171 914 YMPNGN 919 (1133)
Q Consensus 914 ~~~~gs 919 (1133)
|++|..
T Consensus 151 fI~G~~ 156 (424)
T 3mes_A 151 FIDGEP 156 (424)
T ss_dssp CCCSEE
T ss_pred EeCCcc
Confidence 998854
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=94.69 E-value=0.093 Score=58.35 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.3
Q ss_pred CCceecccCccceeeCCCCceEEeccCcccc
Q 001171 957 LDMVHGDIKPQNVLFDADFEAHLSEFGLDRL 987 (1133)
Q Consensus 957 ~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 987 (1133)
.+++|+|+.+.||++++++.+.++||+.+..
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 3599999999999999888899999987754
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.52 E-value=0.13 Score=58.10 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=25.7
Q ss_pred CceecccCccceeeCCC------CceEEeccCccc
Q 001171 958 DMVHGDIKPQNVLFDAD------FEAHLSEFGLDR 986 (1133)
Q Consensus 958 ~ivH~Dlkp~NIll~~~------~~~kl~Dfg~a~ 986 (1133)
.++|+|+.+.||+++++ +.+.++||..|.
T Consensus 245 v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred eEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 48999999999999876 789999998764
No 446
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=92.66 E-value=1 Score=45.42 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHH-hcCCceecccCccceeeCCCCceEEeccCcccccccCCCCCC
Q 001171 918 GNLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFL-HSLDMVHGDIKPQNVLFDADFEAHLSEFGLDRLAIATPAEAS 996 (1133)
Q Consensus 918 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~L-H~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~ 996 (1133)
-+|.++|+..+ ..++++++|.++.|.+.+|.-. +++.-..+=+.|..|++..+|.+...+ ..+.
T Consensus 33 vSL~eIL~~~~----~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~---------- 97 (229)
T 2yle_A 33 LSLEEILRLYN----QPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP-AADD---------- 97 (229)
T ss_dssp EEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC-C-------------
T ss_pred ccHHHHHHHcC----CCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc-cccc----------
Confidence 47999998764 4599999999999999998776 211112333457899999999888764 1110
Q ss_pred CCCCCCCCCCccCccccCCCCCCCCCchhHHHHHHHHHHh
Q 001171 997 SSTTPIGSLGYVSPEAASTGQPTKEADVYSFGIVLLEILT 1036 (1133)
Q Consensus 997 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t 1036 (1133)
.....+.|||... ...+.+.=|||+|+++|.-+-
T Consensus 98 -----~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALD 131 (229)
T 2yle_A 98 -----AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALD 131 (229)
T ss_dssp --------------CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred -----ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhh
Confidence 0112466888763 344677889999999999886
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=87.45 E-value=1.2 Score=50.63 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=24.6
Q ss_pred ceecccCccceee------CCCCceEEeccCcccc
Q 001171 959 MVHGDIKPQNVLF------DADFEAHLSEFGLDRL 987 (1133)
Q Consensus 959 ivH~Dlkp~NIll------~~~~~~kl~Dfg~a~~ 987 (1133)
++|+|+.+.||++ +++..++++||.+|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 6799999999999 4566789999998753
No 448
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=73.03 E-value=0.4 Score=55.55 Aligned_cols=59 Identities=5% Similarity=0.023 Sum_probs=17.6
Q ss_pred cccccccccceeEEEEEECC-ceEEEE------EEcccCCcC---HHHHHHHHHHHhhccCCCeeeEEEEEe
Q 001171 841 EENVLSRGRYGLIFKASYQD-GMVLSI------RRLRDGTID---ENTFRKEAEALGKVKHRNLTVLRGYYA 902 (1133)
Q Consensus 841 ~~~~lg~G~~g~Vy~~~~~~-g~~vav------K~~~~~~~~---~~~~~~E~~~l~~l~hpniv~l~~~~~ 902 (1133)
+.+.+| ||.||+|.+.. ...||| |..+.+..+ ...+.+|+.+++..+|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 445676 99999998864 367888 766543332 246788999999999999999888764
No 449
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=64.99 E-value=8.3 Score=38.81 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=71.3
Q ss_pred cCCCeeeEEEEEeCCCCcEEEEEeccCCC-CHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHhcCCceecccCccc
Q 001171 890 KHRNLTVLRGYYAGPPDVRLLVYDYMPNG-NLATLLQEASHQDGHVLNWPMRHLISLGLARGLSFLHSLDMVHGDIKPQN 968 (1133)
Q Consensus 890 ~hpniv~l~~~~~~~~~~~~lV~e~~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~ivH~Dlkp~N 968 (1133)
.||+.+.. .+-... +...+.++.-+.+ +... ++ ..+...+++++.+|+....++++. +|--+.|+|
T Consensus 43 ~~~~Fl~~-~I~e~e-D~v~~~y~~~~~~~~f~~-ik--------~~~~~eKlr~l~ni~~l~~~~~~r--~tf~L~P~N 109 (215)
T 4ann_A 43 HSPYFIDA-ELTELR-DSFQIHYDINDNHTPFDN-IK--------SFTKNEKLRYLLNIKNLEEVNRTR--YTFVLAPDE 109 (215)
T ss_dssp CCTTBCCE-EEEECS-SEEEEEECCCTTSEEGGG-GG--------GSCHHHHHHHHHHGGGGGGGGGSS--EECCCSGGG
T ss_pred cCCcccce-EEEEcc-cEEEEEEEcCcccCCHHH-HH--------hcCHHHHHHHHHHHHHHHHHhcCc--eEEEEecce
Confidence 58888865 333333 3434444443222 2211 22 277889999999998877655533 677789999
Q ss_pred eeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCch-hHHHHHHHHHHhCCCCCc
Q 001171 969 VLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADV-YSFGIVLLEILTGRKPVM 1042 (1133)
Q Consensus 969 Ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv-wSlG~il~el~tg~~Pf~ 1042 (1133)
++++.++.+++.-.|+... ++|.-+ + ..|. -.+=|++..+++++..|.
T Consensus 110 L~f~~~~~p~i~~RGik~~--------------------l~P~~~-----~-ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 110 LFFTRDGLPIAKTRGLQNV--------------------VDPLPV-----S-EAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp EEECTTSCEEESCCEETTT--------------------BSCCCC-----C-HHHHHHHHHHHHHHHHCTTCCHH
T ss_pred EEEcCCCCEEEEEccCccC--------------------CCCCCC-----C-HHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999987765311 122211 1 1233 347788888999988883
No 450
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=59.65 E-value=23 Score=35.71 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=70.5
Q ss_pred cCCCeeeEEEEEeCCCCcEEEEEeccCCCCHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHH-HHhcCCceecccCccc
Q 001171 890 KHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLISLGLARGLS-FLHSLDMVHGDIKPQN 968 (1133)
Q Consensus 890 ~hpniv~l~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~~L~-~LH~~~ivH~Dlkp~N 968 (1133)
.||++ . ..+-.. ++...+.++.-+++-=...++. .+...+++++.+|+.... +++. -+|--+.|+|
T Consensus 48 ~~~~f-~-~~I~~~-eD~~~i~y~~~~~~~~f~~i~~--------~~~~eKlrll~nl~~L~~~~~~~--r~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI-V-RDIDVS-EDEVKVVIKPPSSFLTFAAIRK--------TTLLSRIRAAIHLVSKVKHHSAR--RLIFIVCPEN 114 (219)
T ss_dssp SCSSS-E-EEEEEC-SSEEEEEEECCTTCEEHHHHHT--------SCHHHHHHHHHHHHHHHSSCCSS--SEECCCCGGG
T ss_pred cCCCC-C-eEEEEe-CCEEEEEEEcCcccCcHHHHHh--------cCHHHHHHHHHHHHHHHHHhhhC--ceeEEEeCce
Confidence 57887 2 233333 3443455555434322233433 678899999999988766 5544 3667788999
Q ss_pred eeeCCCCceEEeccCcccccccCCCCCCCCCCCCCCCCccCccccCCCCCCCCCch-hHHHHHHHHHHhCCCCC
Q 001171 969 VLFDADFEAHLSEFGLDRLAIATPAEASSSTTPIGSLGYVSPEAASTGQPTKEADV-YSFGIVLLEILTGRKPV 1041 (1133)
Q Consensus 969 Ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv-wSlG~il~el~tg~~Pf 1041 (1133)
|++|.++.+++.-.|+- .-++|.-+ + ..|. -.+=|++..++.++..|
T Consensus 115 L~f~~~~~p~i~hRGi~--------------------~~lpP~e~-----~-ee~fl~qyKali~all~~K~~F 162 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVK--------------------ESLPPDEW-----D-DERLLREVKATVLALTEGEYRF 162 (219)
T ss_dssp EEECTTCCEEESCCEET--------------------TTBSSCSC-----C-HHHHHHHHHHHHHHHTTCSSCH
T ss_pred EEEeCCCcEEEEEcCCc--------------------ccCCCCCC-----C-HHHHHHHHHHHHHHHHcCCCCH
Confidence 99999999999877753 22233321 1 1233 34667788888887776
No 451
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.54 E-value=34 Score=29.66 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=32.6
Q ss_pred CcccccCCchhhcccccceeeccCceeecccCcccCCCCCCcEEEccCC
Q 001171 325 NRIRAVFPSWLTNVTSLRVMDLSGNFFSGNLPAAVGSLDKLEVLRVANN 373 (1133)
Q Consensus 325 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 373 (1133)
..++.|....|.+|++|+.+.|-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4566677778888888888877765 33244456777777777777653
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=37.05 E-value=21 Score=25.62 Aligned_cols=9 Identities=0% Similarity=-0.245 Sum_probs=3.8
Q ss_pred hhhhhHhHH
Q 001171 776 YIYSLLRWR 784 (1133)
Q Consensus 776 ~~~~~~~~r 784 (1133)
+++.+++.+
T Consensus 32 ~~~RRRr~~ 40 (44)
T 2l2t_A 32 VYVRRKSIK 40 (44)
T ss_dssp HHHHTTCSS
T ss_pred HHhhhhhhh
Confidence 344444443
No 453
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=33.70 E-value=29 Score=23.55 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.3
Q ss_pred hhhHhH
Q 001171 778 YSLLRW 783 (1133)
Q Consensus 778 ~~~~~~ 783 (1133)
..+.||
T Consensus 28 ~~~iRR 33 (35)
T 1iij_A 28 GILIKR 33 (35)
T ss_dssp THHHHH
T ss_pred heEEee
Confidence 333443
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.81 E-value=83 Score=27.14 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=5.9
Q ss_pred ccccCccccceeec
Q 001171 429 LSFGNLSQLETLNL 442 (1133)
Q Consensus 429 ~~~~~l~~L~~L~L 442 (1133)
.+|.++.+|+.+.+
T Consensus 37 ~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 37 GMFSGCTALEKLIL 50 (100)
T ss_dssp TSSTTCTTCCCEEE
T ss_pred HHHhccCCccEEEE
Confidence 34444444444443
No 455
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=26.50 E-value=4.3e+02 Score=30.95 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHH--HHHHHHhcCCceecccCccceeeCCCCceEEeccCcc
Q 001171 937 WPMRHLISLGLA--RGLSFLHSLDMVHGDIKPQNVLFDADFEAHLSEFGLD 985 (1133)
Q Consensus 937 ~~~~~~i~~~ia--~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 985 (1133)
+..+..++...| +.+.|+=.- +|=.++|||++.+|++.=+|||..
T Consensus 454 ~~a~~nF~~S~A~ySvv~YILGi----gDRH~~NILld~tG~v~HIDFG~~ 500 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYILGV----GDRHLDNLLLTKTGKLFHIDFGYI 500 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----CCCCTTSEEECTTSCEEECCCSSC
T ss_pred HHHHHHHHHHHHHHhHhheeeec----cCCCCcceeEcCCCCEeeeehHHh
Confidence 445555555554 345555333 466789999999999999999986
No 456
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=23.10 E-value=27 Score=20.09 Aligned_cols=9 Identities=44% Similarity=1.450 Sum_probs=7.0
Q ss_pred CCCccceee
Q 001171 59 APCDWRGIV 67 (1133)
Q Consensus 59 ~~c~w~gv~ 67 (1133)
..|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 469999964
Done!