Query 001172
Match_columns 1133
No_of_seqs 394 out of 1255
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 17:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 99.9 3.3E-23 7.1E-28 203.1 15.3 125 67-193 2-134 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 99.9 3.5E-23 7.6E-28 202.7 13.8 121 69-190 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 99.9 6.9E-22 1.5E-26 194.0 14.3 123 67-194 4-139 (139)
4 cd03773 MATH_TRIM37 Tripartite 99.9 1.3E-21 2.9E-26 189.3 13.1 120 66-190 3-130 (132)
5 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.3E-21 2.7E-26 194.5 11.2 123 68-190 1-147 (147)
6 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.8E-21 3.8E-26 192.4 11.4 122 68-189 1-148 (149)
7 COG5077 Ubiquitin carboxyl-ter 99.9 2.6E-22 5.6E-27 234.7 5.9 241 65-349 36-287 (1089)
8 cd03781 MATH_TRAF4 Tumor Necro 99.8 7E-21 1.5E-25 191.5 13.1 122 68-189 1-153 (154)
9 cd03780 MATH_TRAF5 Tumor Necro 99.8 3E-20 6.4E-25 187.0 12.8 122 68-189 1-147 (148)
10 cd03777 MATH_TRAF3 Tumor Necro 99.8 4.5E-20 9.8E-25 192.1 13.7 126 65-190 36-184 (186)
11 cd00121 MATH MATH (meprin and 99.8 1.1E-19 2.4E-24 168.5 14.6 123 68-190 1-126 (126)
12 cd03779 MATH_TRAF1 Tumor Necro 99.8 1.1E-19 2.4E-24 182.9 12.3 122 68-189 1-146 (147)
13 cd03771 MATH_Meprin Meprin fam 99.7 1.2E-17 2.7E-22 171.4 13.7 122 68-189 2-166 (167)
14 PF00917 MATH: MATH domain; I 99.7 7.4E-18 1.6E-22 157.4 9.2 115 74-191 1-119 (119)
15 cd03778 MATH_TRAF2 Tumor Necro 99.7 5.5E-16 1.2E-20 158.9 13.2 125 65-189 16-163 (164)
16 smart00061 MATH meprin and TRA 99.6 5.2E-15 1.1E-19 132.8 10.6 93 70-168 2-95 (95)
17 cd03783 MATH_Meprin_Alpha Mepr 99.3 5.3E-12 1.2E-16 129.9 10.7 121 69-189 3-166 (167)
18 KOG1863 Ubiquitin carboxyl-ter 99.3 3.2E-12 6.9E-17 162.3 6.8 236 68-347 27-273 (1093)
19 cd03782 MATH_Meprin_Beta Mepri 99.3 1.8E-11 4E-16 125.7 10.7 122 68-189 2-166 (167)
20 KOG1987 Speckle-type POZ prote 97.7 0.00021 4.6E-09 78.6 10.4 116 70-194 6-128 (297)
21 PHA03098 kelch-like protein; P 96.7 0.00032 7E-09 83.2 -1.1 134 264-419 7-154 (534)
22 PHA02713 hypothetical protein; 96.6 0.00078 1.7E-08 81.5 1.1 134 266-423 25-176 (557)
23 KOG1029 Endocytic adaptor prot 96.3 0.012 2.7E-07 72.2 8.9 38 399-436 314-352 (1118)
24 KOG2412 Nuclear-export-signal 96.2 0.048 1E-06 65.4 13.0 53 416-468 211-264 (591)
25 KOG4364 Chromatin assembly fac 96.2 0.014 3.1E-07 70.9 8.8 7 499-505 380-386 (811)
26 KOG4364 Chromatin assembly fac 95.9 0.074 1.6E-06 65.0 12.9 14 493-506 378-391 (811)
27 PTZ00121 MAEBL; Provisional 95.9 0.043 9.4E-07 71.2 11.4 6 30-35 575-580 (2084)
28 PTZ00266 NIMA-related protein 95.8 0.1 2.2E-06 67.7 14.2 7 976-982 868-874 (1021)
29 PTZ00121 MAEBL; Provisional 95.6 0.077 1.7E-06 69.1 11.7 8 272-279 986-993 (2084)
30 KOG0163 Myosin class VI heavy 95.2 0.087 1.9E-06 65.0 9.9 32 419-450 928-959 (1259)
31 PHA02790 Kelch-like protein; P 94.6 0.01 2.2E-07 70.7 0.3 136 262-420 18-172 (480)
32 PTZ00266 NIMA-related protein 94.2 0.19 4E-06 65.3 10.0 14 967-980 893-906 (1021)
33 PRK00247 putative inner membra 94.0 0.32 7E-06 57.9 10.8 12 326-337 256-267 (429)
34 KOG2412 Nuclear-export-signal 93.2 0.64 1.4E-05 56.3 11.4 15 285-299 65-79 (591)
35 KOG1029 Endocytic adaptor prot 92.9 0.37 8.1E-06 60.0 9.1 9 834-842 857-865 (1118)
36 PF05262 Borrelia_P83: Borreli 92.4 0.85 1.8E-05 55.3 11.1 17 227-243 81-97 (489)
37 KOG4350 Uncharacterized conser 92.4 0.15 3.2E-06 59.7 4.7 79 266-349 44-133 (620)
38 PF05262 Borrelia_P83: Borreli 92.4 0.55 1.2E-05 56.8 9.5 11 133-143 8-18 (489)
39 KOG0163 Myosin class VI heavy 92.3 1.6 3.5E-05 54.6 13.1 10 233-242 649-658 (1259)
40 KOG0345 ATP-dependent RNA heli 92.3 0.19 4.2E-06 59.9 5.5 16 336-351 436-451 (567)
41 KOG2072 Translation initiation 91.3 1.8 3.9E-05 54.8 12.3 22 384-405 743-764 (988)
42 KOG4441 Proteins containing BT 91.3 0.061 1.3E-06 65.9 0.0 137 264-423 34-187 (571)
43 KOG2002 TPR-containing nuclear 91.1 1.5 3.3E-05 56.3 11.6 15 381-395 783-797 (1018)
44 KOG2891 Surface glycoprotein [ 91.1 2.3 4.9E-05 48.1 11.7 27 449-475 387-414 (445)
45 KOG2072 Translation initiation 90.4 2.7 5.8E-05 53.3 12.7 28 406-433 757-785 (988)
46 KOG3054 Uncharacterized conser 89.8 1.2 2.5E-05 49.7 8.1 38 531-574 213-250 (299)
47 PRK00247 putative inner membra 89.7 1.4 3E-05 52.8 9.3 15 285-300 112-126 (429)
48 CHL00118 atpG ATP synthase CF0 89.6 3.3 7.1E-05 42.8 10.9 30 410-439 49-78 (156)
49 KOG0297 TNF receptor-associate 89.4 0.23 5.1E-06 58.3 2.8 77 65-141 277-365 (391)
50 TIGR03321 alt_F1F0_F0_B altern 89.3 3 6.5E-05 46.1 11.1 50 387-437 10-59 (246)
51 PRK13428 F0F1 ATP synthase sub 89.1 2.5 5.4E-05 50.8 11.0 49 388-437 7-55 (445)
52 PF07946 DUF1682: Protein of u 89.0 1.5 3.2E-05 50.4 8.6 8 180-187 110-117 (321)
53 PF00651 BTB: BTB/POZ domain; 88.7 0.048 1E-06 50.8 -2.9 32 265-296 9-44 (111)
54 KOG2002 TPR-containing nuclear 88.4 7.1 0.00015 50.6 14.5 9 212-220 639-647 (1018)
55 PF07946 DUF1682: Protein of u 88.3 1 2.2E-05 51.6 6.9 15 380-394 234-248 (321)
56 PRK14474 F0F1 ATP synthase sub 87.7 4 8.6E-05 45.6 10.7 44 387-433 10-55 (250)
57 PRK14472 F0F1 ATP synthase sub 87.5 5.3 0.00011 41.9 11.0 54 385-439 21-74 (175)
58 PRK14471 F0F1 ATP synthase sub 87.5 5.4 0.00012 41.3 10.9 29 410-438 35-63 (164)
59 PRK13453 F0F1 ATP synthase sub 87.3 5.6 0.00012 41.8 11.0 52 386-438 22-73 (173)
60 PRK09174 F0F1 ATP synthase sub 87.3 4.7 0.0001 43.8 10.7 55 384-439 55-109 (204)
61 PRK06231 F0F1 ATP synthase sub 87.1 5.6 0.00012 43.2 11.1 51 385-436 51-101 (205)
62 PRK13454 F0F1 ATP synthase sub 87.0 5 0.00011 42.6 10.5 54 384-438 33-86 (181)
63 PRK08475 F0F1 ATP synthase sub 86.7 5.8 0.00013 41.6 10.7 52 385-439 25-78 (167)
64 PRK07352 F0F1 ATP synthase sub 86.3 7 0.00015 41.0 11.1 49 388-437 25-73 (174)
65 KOG3809 Microtubule-binding pr 86.2 2.6 5.6E-05 50.2 8.5 12 383-394 101-112 (583)
66 PRK13455 F0F1 ATP synthase sub 85.8 5.4 0.00012 42.2 10.0 48 389-439 33-83 (184)
67 PRK07353 F0F1 ATP synthase sub 85.6 8.7 0.00019 38.6 10.9 31 409-439 31-61 (140)
68 PRK13460 F0F1 ATP synthase sub 85.1 9.6 0.00021 40.0 11.4 53 385-438 19-71 (173)
69 PRK14475 F0F1 ATP synthase sub 84.8 8.4 0.00018 40.3 10.7 31 409-439 36-66 (167)
70 PRK06569 F0F1 ATP synthase sub 84.8 14 0.0003 39.0 12.2 58 385-443 13-70 (155)
71 CHL00019 atpF ATP synthase CF0 84.6 8.9 0.00019 40.6 11.0 50 388-438 30-79 (184)
72 PF06098 Radial_spoke_3: Radia 84.4 11 0.00023 43.4 12.1 47 386-433 130-178 (291)
73 PRK14473 F0F1 ATP synthase sub 84.1 9.4 0.0002 39.6 10.7 29 410-438 35-63 (164)
74 KOG3054 Uncharacterized conser 84.0 4 8.7E-05 45.6 8.2 14 416-429 116-129 (299)
75 PRK09510 tolA cell envelope in 83.1 6.8 0.00015 46.6 10.2 9 507-515 259-267 (387)
76 KOG2891 Surface glycoprotein [ 82.6 5.3 0.00011 45.3 8.5 19 154-174 123-141 (445)
77 PRK08476 F0F1 ATP synthase sub 82.5 14 0.00029 37.9 10.9 30 409-438 33-62 (141)
78 COG3064 TolA Membrane protein 82.2 4.6 0.0001 46.6 8.0 11 417-427 100-110 (387)
79 PF09727 CortBP2: Cortactin-bi 82.2 12 0.00025 40.9 10.6 38 379-432 90-127 (192)
80 PRK13461 F0F1 ATP synthase sub 82.1 14 0.0003 38.1 11.0 47 386-433 9-55 (159)
81 PRK06568 F0F1 ATP synthase sub 81.9 12 0.00027 39.3 10.5 49 388-439 10-60 (154)
82 KOG2357 Uncharacterized conser 81.7 11 0.00025 44.9 11.2 26 165-190 189-219 (440)
83 PF07888 CALCOCO1: Calcium bin 80.9 67 0.0015 40.1 17.6 63 457-520 429-494 (546)
84 COG3064 TolA Membrane protein 79.8 6.6 0.00014 45.3 8.2 12 463-474 178-189 (387)
85 TIGR01144 ATP_synt_b ATP synth 79.7 19 0.00041 36.5 10.8 36 393-433 10-45 (147)
86 COG4499 Predicted membrane pro 79.7 3.4 7.4E-05 48.7 6.1 19 87-105 48-71 (434)
87 KOG0742 AAA+-type ATPase [Post 78.7 21 0.00046 43.1 12.0 18 285-302 10-27 (630)
88 PRK05759 F0F1 ATP synthase sub 78.0 23 0.0005 36.1 10.9 24 410-433 31-54 (156)
89 smart00225 BTB Broad-Complex, 77.8 0.46 1E-05 41.3 -1.2 75 268-350 1-86 (90)
90 KOG2963 RNA-binding protein re 77.6 3.5 7.5E-05 48.0 5.3 10 233-242 207-216 (405)
91 KOG4848 Extracellular matrix-a 77.5 20 0.00044 39.0 10.5 17 440-456 198-214 (225)
92 KOG1103 Predicted coiled-coil 77.1 11 0.00023 44.1 8.9 17 575-591 316-332 (561)
93 PF10211 Ax_dynein_light: Axon 76.3 43 0.00094 36.1 12.8 46 379-424 76-121 (189)
94 KOG3915 Transcription regulato 75.5 22 0.00047 43.1 11.0 16 404-419 513-528 (641)
95 cd02666 Peptidase_C19J A subfa 75.4 0.96 2.1E-05 52.4 0.2 34 213-255 1-34 (343)
96 KOG4786 Ubinuclein, nuclear pr 75.1 2.3 5E-05 53.0 3.2 79 401-479 673-754 (1136)
97 KOG0556 Aspartyl-tRNA syntheta 73.6 3.7 8E-05 48.8 4.2 20 502-522 68-87 (533)
98 KOG1924 RhoA GTPase effector D 73.4 9.7 0.00021 48.4 7.8 19 389-411 975-993 (1102)
99 KOG2357 Uncharacterized conser 73.1 19 0.0004 43.2 9.7 26 318-345 262-293 (440)
100 KOG4691 Uncharacterized conser 72.9 24 0.00052 38.6 9.6 23 428-450 122-144 (227)
101 TIGR02794 tolA_full TolA prote 72.7 18 0.00039 42.5 9.5 7 400-406 95-101 (346)
102 PRK14474 F0F1 ATP synthase sub 72.4 49 0.0011 37.2 12.5 20 388-407 15-34 (250)
103 KOG4031 Vesicle coat protein c 72.3 14 0.00031 40.6 7.9 24 413-436 112-136 (216)
104 PF09756 DDRGK: DDRGK domain; 71.4 1.3 2.8E-05 47.7 0.0 18 451-468 37-54 (188)
105 PRK09173 F0F1 ATP synthase sub 71.0 40 0.00087 34.8 10.7 30 409-438 28-57 (159)
106 PF06936 Selenoprotein_S: Sele 70.1 25 0.00055 38.2 9.2 27 381-407 32-58 (190)
107 PTZ00234 variable surface prot 70.1 6.1 0.00013 47.6 5.1 27 825-851 341-375 (433)
108 PF15236 CCDC66: Coiled-coil d 69.9 21 0.00046 37.8 8.4 23 417-439 80-102 (157)
109 COG5269 ZUO1 Ribosome-associat 69.8 31 0.00067 39.5 10.0 59 368-428 184-243 (379)
110 PRK09174 F0F1 ATP synthase sub 69.5 68 0.0015 35.1 12.5 22 389-410 64-85 (204)
111 PF06637 PV-1: PV-1 protein (P 69.2 46 0.001 39.7 11.6 73 395-467 286-364 (442)
112 CHL00118 atpG ATP synthase CF0 68.8 51 0.0011 34.2 10.9 10 340-349 38-47 (156)
113 TIGR03321 alt_F1F0_F0_B altern 68.2 69 0.0015 35.6 12.4 13 389-401 16-28 (246)
114 KOG0112 Large RNA-binding prot 68.1 6 0.00013 50.8 4.6 14 500-513 782-795 (975)
115 COG0711 AtpF F0F1-type ATP syn 68.0 85 0.0018 33.0 12.4 30 408-437 31-60 (161)
116 PRK13454 F0F1 ATP synthase sub 66.9 37 0.00081 36.2 9.7 26 386-411 39-64 (181)
117 KOG2192 PolyC-binding hnRNP-K 66.8 27 0.00058 39.8 8.8 102 978-1091 183-288 (390)
118 PF00430 ATP-synt_B: ATP synth 66.1 18 0.0004 35.4 6.8 35 392-431 13-47 (132)
119 PF06098 Radial_spoke_3: Radia 65.6 38 0.00083 39.1 10.0 19 404-422 158-176 (291)
120 PF06658 DUF1168: Protein of u 64.9 44 0.00096 35.0 9.4 19 440-458 85-103 (142)
121 PRK13460 F0F1 ATP synthase sub 64.6 1.1E+02 0.0023 32.3 12.4 25 386-410 24-48 (173)
122 PF06936 Selenoprotein_S: Sele 64.2 27 0.00059 38.0 8.1 13 402-414 76-88 (190)
123 PRK14472 F0F1 ATP synthase sub 64.0 1.1E+02 0.0024 32.2 12.4 17 390-406 30-46 (175)
124 PRK13461 F0F1 ATP synthase sub 63.5 1.2E+02 0.0027 31.3 12.5 20 389-408 16-35 (159)
125 KOG3915 Transcription regulato 62.6 68 0.0015 39.2 11.4 16 417-432 535-550 (641)
126 KOG0742 AAA+-type ATPase [Post 62.5 77 0.0017 38.6 11.8 7 339-345 76-82 (630)
127 PRK13453 F0F1 ATP synthase sub 62.5 1.2E+02 0.0027 32.0 12.4 24 385-408 25-48 (173)
128 KOG2505 Ankyrin repeat protein 62.1 14 0.0003 45.2 5.8 14 109-122 177-190 (591)
129 KOG3654 Uncharacterized CH dom 62.0 16 0.00034 44.5 6.3 26 217-243 190-215 (708)
130 PRK00409 recombination and DNA 61.5 46 0.001 43.1 10.8 16 287-302 410-425 (782)
131 PF08229 SHR3_chaperone: ER me 61.4 10 0.00022 41.4 4.3 13 415-427 160-172 (196)
132 KOG2689 Predicted ubiquitin re 61.2 15 0.00032 42.0 5.6 10 410-419 99-108 (290)
133 KOG2341 TATA box binding prote 60.6 11 0.00023 46.7 4.8 33 393-425 408-440 (563)
134 PF11208 DUF2992: Protein of u 60.4 26 0.00057 36.1 6.8 45 413-457 85-129 (132)
135 PF10147 CR6_interact: Growth 60.2 1.7E+02 0.0036 32.8 13.2 14 440-453 187-200 (217)
136 KOG1363 Predicted regulator of 59.8 25 0.00054 42.9 7.6 11 233-243 146-156 (460)
137 PF08229 SHR3_chaperone: ER me 59.7 7.6 0.00017 42.3 3.0 17 407-423 156-172 (196)
138 PF10500 SR-25: Nuclear RNA-sp 59.6 11 0.00025 41.7 4.3 9 498-506 156-164 (225)
139 KOG0949 Predicted helicase, DE 57.8 22 0.00047 46.8 6.8 17 971-987 1279-1295(1330)
140 KOG2341 TATA box binding prote 57.1 32 0.0007 42.8 7.9 27 418-444 430-456 (563)
141 KOG0783 Uncharacterized conser 56.8 6.3 0.00014 50.3 2.0 49 337-394 791-844 (1267)
142 KOG3634 Troponin [Cytoskeleton 56.4 22 0.00047 41.6 6.0 31 420-450 85-115 (361)
143 KOG4661 Hsp27-ERE-TATA-binding 56.0 56 0.0012 40.7 9.4 25 459-484 670-694 (940)
144 PRK00409 recombination and DNA 55.5 59 0.0013 42.1 10.3 15 89-103 188-202 (782)
145 PRK08475 F0F1 ATP synthase sub 55.4 1.2E+02 0.0026 32.0 10.9 10 340-349 38-47 (167)
146 KOG0345 ATP-dependent RNA heli 55.2 18 0.00039 44.2 5.3 41 381-424 451-495 (567)
147 PF04696 Pinin_SDK_memA: pinin 54.7 1.7E+02 0.0036 30.1 11.4 10 385-394 8-17 (131)
148 COG4499 Predicted membrane pro 54.3 12 0.00026 44.4 3.6 12 414-425 365-376 (434)
149 KOG3859 Septins (P-loop GTPase 54.0 72 0.0016 37.1 9.4 15 405-419 318-332 (406)
150 PRK13428 F0F1 ATP synthase sub 53.8 88 0.0019 38.0 10.8 19 389-407 12-30 (445)
151 PF12037 DUF3523: Domain of un 53.6 1.6E+02 0.0034 34.1 12.1 12 405-416 109-120 (276)
152 TIGR01069 mutS2 MutS2 family p 53.6 1E+02 0.0022 40.0 11.9 15 89-103 183-197 (771)
153 PRK07352 F0F1 ATP synthase sub 53.5 2.2E+02 0.0047 30.1 12.4 23 385-407 26-48 (174)
154 PHA00451 protein kinase 53.3 32 0.0007 39.5 6.6 14 223-236 141-154 (362)
155 PRK14473 F0F1 ATP synthase sub 53.1 2.3E+02 0.005 29.5 12.5 22 389-410 19-40 (164)
156 PRK14471 F0F1 ATP synthase sub 53.1 1.4E+02 0.0029 31.1 10.8 20 391-410 21-40 (164)
157 KOG3654 Uncharacterized CH dom 52.4 26 0.00056 42.9 5.9 15 453-467 430-444 (708)
158 PRK06231 F0F1 ATP synthase sub 52.3 1.3E+02 0.0029 32.8 10.9 14 337-350 61-74 (205)
159 KOG1150 Predicted molecular ch 51.6 36 0.00078 37.6 6.4 42 440-481 168-212 (250)
160 KOG2689 Predicted ubiquitin re 51.5 79 0.0017 36.4 9.2 27 406-432 99-125 (290)
161 KOG1363 Predicted regulator of 51.4 48 0.001 40.5 8.1 9 248-256 169-177 (460)
162 PF01086 Clathrin_lg_ch: Clath 50.8 20 0.00043 39.7 4.5 14 415-428 120-133 (225)
163 TIGR01144 ATP_synt_b ATP synth 50.0 2.9E+02 0.0063 28.0 12.4 6 396-401 21-26 (147)
164 KOG4001 Axonemal dynein light 49.9 1.1E+02 0.0024 34.0 9.6 69 404-472 166-235 (259)
165 PRK07353 F0F1 ATP synthase sub 49.9 1.9E+02 0.004 29.1 10.9 18 392-409 19-36 (140)
166 KOG1962 B-cell receptor-associ 49.8 1.3E+02 0.0029 33.6 10.4 22 396-418 110-131 (216)
167 PRK08476 F0F1 ATP synthase sub 49.7 1.8E+02 0.0039 29.9 10.9 15 392-406 21-35 (141)
168 KOG2007 Cysteinyl-tRNA synthet 49.6 71 0.0015 39.6 9.0 46 391-437 491-536 (586)
169 KOG4715 SWI/SNF-related matrix 49.5 86 0.0019 36.7 9.1 41 501-545 343-383 (410)
170 PF08243 SPT2: SPT2 chromatin 49.3 24 0.00053 35.5 4.4 38 402-439 73-110 (116)
171 KOG0343 RNA Helicase [RNA proc 49.1 44 0.00095 41.8 7.2 6 110-115 272-277 (758)
172 TIGR01069 mutS2 MutS2 family p 48.9 2E+02 0.0043 37.5 13.4 16 287-302 405-420 (771)
173 PRK05759 F0F1 ATP synthase sub 48.1 3.2E+02 0.007 27.9 12.4 19 392-410 18-36 (156)
174 PF12569 NARP1: NMDA receptor- 48.0 14 0.00031 45.4 3.2 16 226-241 126-141 (517)
175 KOG3634 Troponin [Cytoskeleton 48.0 77 0.0017 37.3 8.6 7 608-614 203-209 (361)
176 KOG0066 eIF2-interacting prote 47.7 35 0.00077 41.6 6.0 46 406-451 496-541 (807)
177 KOG3088 Secretory carrier memb 47.4 22 0.00047 41.0 4.1 23 450-472 70-92 (313)
178 PF02731 SKIP_SNW: SKIP/SNW do 47.2 48 0.0011 35.3 6.4 20 379-399 88-107 (158)
179 PF15066 CAGE1: Cancer-associa 46.8 1.8E+02 0.004 35.7 11.6 39 439-477 484-522 (527)
180 KOG1772 Vacuolar H+-ATPase V1 46.8 57 0.0012 32.7 6.3 25 441-465 26-50 (108)
181 cd02664 Peptidase_C19H A subfa 46.4 10 0.00023 43.1 1.6 33 215-256 1-33 (327)
182 KOG0681 Actin-related protein 46.3 31 0.00066 42.8 5.4 20 399-418 351-370 (645)
183 COG5644 Uncharacterized conser 46.3 55 0.0012 40.8 7.4 32 409-444 370-401 (869)
184 TIGR00570 cdk7 CDK-activating 45.9 98 0.0021 36.2 9.1 8 335-342 96-103 (309)
185 KOG2635 Medium subunit of clat 45.0 50 0.0011 40.1 6.7 41 385-429 102-143 (512)
186 KOG3756 Pinin (desmosome-assoc 44.9 2.5E+02 0.0055 33.1 11.9 43 385-430 140-183 (340)
187 KOG3878 Protein involved in ma 44.9 2.1E+02 0.0045 34.0 11.3 33 401-433 115-147 (469)
188 cd02659 peptidase_C19C A subfa 44.6 8.5 0.00018 43.3 0.5 34 212-254 1-34 (334)
189 KOG2441 mRNA splicing factor/p 44.4 69 0.0015 38.4 7.6 20 379-399 261-280 (506)
190 CHL00019 atpF ATP synthase CF0 44.3 2.2E+02 0.0048 30.3 10.9 11 339-349 39-49 (184)
191 PF15346 ARGLU: Arginine and g 44.2 3.9E+02 0.0084 28.5 12.2 16 465-480 100-115 (149)
192 KOG4571 Activating transcripti 43.9 1E+02 0.0022 35.8 8.6 52 407-459 242-293 (294)
193 KOG1015 Transcription regulato 43.8 19 0.00042 47.0 3.4 54 419-472 549-615 (1567)
194 PRK12704 phosphodiesterase; Pr 43.6 62 0.0013 40.1 7.6 20 569-588 195-214 (520)
195 PRK04863 mukB cell division pr 42.9 1.9E+02 0.0041 40.5 12.4 40 377-416 941-982 (1486)
196 smart00784 SPT2 SPT2 chromatin 42.7 41 0.0009 33.9 4.8 36 403-438 69-104 (111)
197 KOG4657 Uncharacterized conser 42.5 4.4E+02 0.0096 29.9 12.9 53 402-456 62-116 (246)
198 PF12757 DUF3812: Protein of u 42.1 58 0.0013 33.2 5.9 17 409-425 75-91 (126)
199 PF09831 DUF2058: Uncharacteri 41.1 45 0.00097 36.1 5.1 7 433-439 15-21 (177)
200 PRK06569 F0F1 ATP synthase sub 41.0 3.5E+02 0.0077 28.9 11.5 12 396-407 28-39 (155)
201 PF10186 Atg14: UV radiation r 40.7 5.4E+02 0.012 28.5 13.8 28 381-408 21-48 (302)
202 KOG0288 WD40 repeat protein Ti 40.6 1.2E+02 0.0027 36.7 8.9 14 486-499 118-131 (459)
203 PF15236 CCDC66: Coiled-coil d 40.4 1.5E+02 0.0033 31.7 8.7 26 419-444 72-98 (157)
204 COG5374 Uncharacterized conser 39.7 1.2E+02 0.0026 33.2 7.9 68 412-479 116-191 (192)
205 COG4942 Membrane-bound metallo 39.4 5.6E+02 0.012 31.4 14.2 14 335-348 118-131 (420)
206 cd02669 Peptidase_C19M A subfa 39.3 14 0.00029 44.3 1.1 37 210-255 116-152 (440)
207 PF00430 ATP-synt_B: ATP synth 39.2 94 0.002 30.5 6.8 14 403-416 35-48 (132)
208 KOG0112 Large RNA-binding prot 39.1 28 0.00062 45.1 3.8 19 498-516 784-803 (975)
209 PHA03247 large tegument protei 39.0 1.2E+03 0.025 35.2 18.4 11 289-299 2226-2236(3151)
210 PRK11637 AmiB activator; Provi 38.3 3.3E+02 0.007 32.7 12.2 9 528-536 314-322 (428)
211 PF03879 Cgr1: Cgr1 family; I 38.0 3.9E+02 0.0085 27.1 10.7 23 404-426 30-52 (108)
212 KOG2507 Ubiquitin regulatory p 37.8 28 0.00061 42.0 3.3 11 408-418 204-214 (506)
213 PF09731 Mitofilin: Mitochondr 37.0 6.4E+02 0.014 31.4 14.9 34 375-411 253-286 (582)
214 TIGR00570 cdk7 CDK-activating 36.9 1.2E+02 0.0026 35.5 8.0 8 429-436 151-158 (309)
215 KOG1265 Phospholipase C [Lipid 36.4 2.4E+02 0.0051 37.4 10.9 119 367-495 1024-1157(1189)
216 PF04889 Cwf_Cwc_15: Cwf15/Cwc 36.4 69 0.0015 36.2 5.9 7 418-424 150-156 (244)
217 PLN02316 synthase/transferase 36.3 78 0.0017 42.4 7.2 25 573-600 335-359 (1036)
218 PF11861 DUF3381: Domain of un 35.8 81 0.0018 33.4 6.0 14 331-344 30-43 (159)
219 smart00786 SHR3_chaperone ER m 35.8 44 0.00096 36.6 4.2 13 407-419 156-168 (196)
220 cd03405 Band_7_HflC Band_7_Hfl 35.2 2E+02 0.0042 31.3 9.1 32 430-461 176-207 (242)
221 cd02661 Peptidase_C19E A subfa 35.2 23 0.0005 38.8 2.1 34 213-255 1-34 (304)
222 COG4942 Membrane-bound metallo 35.1 2.4E+02 0.0053 34.4 10.3 9 528-536 298-306 (420)
223 PF13904 DUF4207: Domain of un 35.0 2.2E+02 0.0048 32.3 9.6 12 386-397 85-96 (264)
224 TIGR03319 YmdA_YtgF conserved 34.6 1E+02 0.0023 38.1 7.6 20 569-588 189-208 (514)
225 KOG4673 Transcription factor T 34.0 1.5E+02 0.0031 38.1 8.4 37 401-437 416-452 (961)
226 COG5269 ZUO1 Ribosome-associat 33.9 2.6E+02 0.0056 32.5 9.7 8 387-394 219-226 (379)
227 PF05890 Ebp2: Eukaryotic rRNA 33.6 1.7E+02 0.0038 33.5 8.5 25 408-432 116-140 (271)
228 KOG0717 Molecular chaperone (D 33.2 3.7E+02 0.0081 33.3 11.4 16 410-425 196-211 (508)
229 KOG1103 Predicted coiled-coil 33.2 1.9E+02 0.0041 34.5 8.7 12 458-469 223-234 (561)
230 KOG2573 Ribosome biogenesis pr 33.0 31 0.00068 41.3 2.7 13 229-241 278-290 (498)
231 PF02029 Caldesmon: Caldesmon; 33.0 1.7E+02 0.0036 36.4 8.8 7 594-600 429-435 (492)
232 PF00769 ERM: Ezrin/radixin/mo 32.9 4.1E+02 0.009 29.9 11.2 20 379-398 4-23 (246)
233 KOG2062 26S proteasome regulat 32.8 16 0.00034 46.6 0.3 18 440-457 793-810 (929)
234 KOG4739 Uncharacterized protei 32.6 3.6E+02 0.0078 30.6 10.5 10 598-607 220-229 (233)
235 PRK12585 putative monovalent c 32.6 1.2E+02 0.0026 33.5 6.6 11 378-388 108-118 (197)
236 COG5493 Uncharacterized conser 32.5 4.8E+02 0.01 29.2 11.1 24 401-425 24-47 (231)
237 PF15086 UPF0542: Uncharacteri 32.5 64 0.0014 30.5 4.0 14 417-430 42-55 (74)
238 cd03404 Band_7_HflK Band_7_Hfl 32.3 1.6E+02 0.0035 32.6 8.0 17 177-193 80-96 (266)
239 cd02671 Peptidase_C19O A subfa 32.3 13 0.00029 42.8 -0.4 34 210-252 21-54 (332)
240 TIGR01933 hflK HflK protein. H 32.1 2.5E+02 0.0054 31.1 9.4 15 178-192 54-68 (261)
241 PRK12704 phosphodiesterase; Pr 31.8 2.5E+02 0.0055 35.0 10.2 8 584-591 216-223 (520)
242 KOG2505 Ankyrin repeat protein 31.8 81 0.0018 39.0 5.8 14 176-189 289-303 (591)
243 PF07543 PGA2: Protein traffic 31.8 1.3E+02 0.0028 31.5 6.5 25 396-424 26-50 (140)
244 PF15295 CCDC50_N: Coiled-coil 31.7 4.8E+02 0.01 27.4 10.4 9 392-400 26-34 (132)
245 KOG4369 RTK signaling protein 31.7 30 0.00065 46.0 2.4 27 973-1000 1931-1957(2131)
246 PF04747 DUF612: Protein of un 31.5 1.9E+02 0.0041 34.8 8.5 24 390-413 34-57 (510)
247 KOG2484 GTPase [General functi 31.4 41 0.0009 40.5 3.3 18 575-593 226-243 (435)
248 PHA02571 a-gt.4 hypothetical p 31.1 1.2E+02 0.0027 30.6 5.9 37 417-453 17-55 (109)
249 COG5192 BMS1 GTP-binding prote 30.8 58 0.0013 40.8 4.4 29 440-468 1030-1058(1077)
250 cd02657 Peptidase_C19A A subfa 30.7 25 0.00054 39.1 1.4 33 215-256 1-33 (305)
251 PF04747 DUF612: Protein of un 30.5 2.7E+02 0.0058 33.6 9.4 14 603-616 250-263 (510)
252 COG2811 NtpF Archaeal/vacuolar 30.4 3.2E+02 0.0069 27.7 8.7 17 413-429 27-43 (108)
253 KOG4722 Zn-finger protein [Gen 30.3 3.8E+02 0.0082 32.8 10.6 96 383-480 334-439 (672)
254 PF02029 Caldesmon: Caldesmon; 30.0 2.6E+02 0.0055 34.9 9.6 29 494-522 369-398 (492)
255 KOG0783 Uncharacterized conser 29.9 21 0.00046 46.0 0.7 57 266-322 558-637 (1267)
256 PF14235 DUF4337: Domain of un 29.8 2.3E+02 0.005 30.1 8.1 27 442-468 80-106 (157)
257 KOG2457 A/G-specific adenine D 29.7 48 0.001 39.6 3.4 21 966-986 443-463 (555)
258 KOG0994 Extracellular matrix g 29.7 5.2E+02 0.011 35.5 12.4 18 381-398 1627-1644(1758)
259 PTZ00436 60S ribosomal protein 29.7 3.6E+02 0.0078 31.8 10.0 7 236-242 13-19 (357)
260 PF12999 PRKCSH-like: Glucosid 29.7 1.9E+02 0.0041 31.4 7.6 35 379-422 116-150 (176)
261 KOG2668 Flotillins [Intracellu 29.5 2.1E+02 0.0045 34.3 8.3 41 433-473 293-334 (428)
262 cd02658 Peptidase_C19B A subfa 29.3 21 0.00045 39.9 0.5 30 215-253 1-30 (311)
263 KOG2270 Serine/threonine prote 29.0 40 0.00087 40.7 2.7 14 180-193 231-244 (520)
264 KOG1156 N-terminal acetyltrans 28.9 57 0.0012 41.3 4.0 32 441-472 584-615 (700)
265 PRK07720 fliJ flagellar biosyn 28.7 6.4E+02 0.014 25.7 11.5 14 402-415 71-84 (146)
266 KOG4591 Uncharacterized conser 28.5 20 0.00044 39.4 0.2 89 266-363 66-165 (280)
267 KOG1962 B-cell receptor-associ 28.5 2.5E+02 0.0055 31.5 8.4 8 336-343 88-95 (216)
268 KOG4657 Uncharacterized conser 28.3 7.3E+02 0.016 28.3 11.8 12 553-564 207-218 (246)
269 TIGR01147 V_ATP_synt_G vacuola 28.1 2.4E+02 0.0052 28.7 7.5 26 443-468 28-53 (113)
270 KOG4661 Hsp27-ERE-TATA-binding 27.7 3.6E+02 0.0079 34.1 10.1 9 476-484 680-688 (940)
271 PLN02850 aspartate-tRNA ligase 27.5 52 0.0011 40.8 3.4 19 889-907 302-321 (530)
272 KOG0343 RNA Helicase [RNA proc 27.4 1E+02 0.0022 38.9 5.6 15 513-527 733-747 (758)
273 cd02668 Peptidase_C19L A subfa 27.4 20 0.00044 40.6 -0.1 32 215-255 1-32 (324)
274 PRK03963 V-type ATP synthase s 27.3 1.2E+02 0.0026 32.3 5.7 7 417-423 20-26 (198)
275 KOG2007 Cysteinyl-tRNA synthet 27.3 1.1E+02 0.0023 38.1 5.7 6 95-100 56-61 (586)
276 KOG4055 Uncharacterized conser 27.2 3.9E+02 0.0084 29.5 9.2 6 404-409 109-114 (213)
277 PF03879 Cgr1: Cgr1 family; I 27.2 2.9E+02 0.0064 27.9 7.8 30 399-428 33-62 (108)
278 KOG2573 Ribosome biogenesis pr 26.7 70 0.0015 38.6 4.0 11 67-77 11-21 (498)
279 KOG4326 Mitochondrial F1F0-ATP 26.5 4.7E+02 0.01 25.0 8.4 12 383-394 12-23 (81)
280 COG1422 Predicted membrane pro 26.5 56 0.0012 36.0 3.0 38 442-479 72-109 (201)
281 PTZ00074 60S ribosomal protein 26.2 1.6E+02 0.0035 30.8 6.0 7 401-407 87-93 (135)
282 PHA01750 hypothetical protein 26.2 2.6E+02 0.0055 26.2 6.6 28 391-419 17-44 (75)
283 PRK00106 hypothetical protein; 26.2 3.1E+02 0.0068 34.5 9.6 25 610-634 242-267 (535)
284 PF05529 Bap31: B-cell recepto 26.1 4.3E+02 0.0092 28.2 9.5 14 386-399 108-121 (192)
285 TIGR02473 flagell_FliJ flagell 25.7 6.6E+02 0.014 24.9 11.0 10 402-411 68-77 (141)
286 KOG2385 Uncharacterized conser 25.6 56 0.0012 40.5 3.1 43 390-434 568-610 (633)
287 PF05529 Bap31: B-cell recepto 25.5 4.4E+02 0.0094 28.2 9.5 6 389-394 105-110 (192)
288 PTZ00491 major vault protein; 25.4 2.6E+02 0.0057 36.9 8.9 67 370-446 633-700 (850)
289 PF03538 VRP1: Salmonella viru 25.1 26 0.00057 40.9 0.3 48 971-1020 171-223 (325)
290 PF00443 UCH: Ubiquitin carbox 25.1 29 0.00064 36.3 0.7 33 213-254 1-33 (269)
291 PF05279 Asp-B-Hydro_N: Aspart 24.9 1.8E+02 0.004 33.0 6.7 10 309-318 43-52 (243)
292 PF12569 NARP1: NMDA receptor- 24.8 85 0.0018 38.9 4.5 20 444-463 413-432 (517)
293 PTZ00401 aspartyl-tRNA synthet 24.7 58 0.0013 40.7 3.1 19 889-907 290-309 (550)
294 PRK05689 fliJ flagellar biosyn 24.6 7E+02 0.015 25.3 10.4 11 440-450 113-123 (147)
295 TIGR03319 YmdA_YtgF conserved 24.5 4.5E+02 0.0098 32.8 10.5 6 628-633 240-245 (514)
296 KOG4043 Uncharacterized conser 24.5 49 0.0011 35.4 2.1 20 436-455 179-198 (214)
297 PF05384 DegS: Sensor protein 24.4 6.9E+02 0.015 26.8 10.5 33 393-425 65-101 (159)
298 PF15295 CCDC50_N: Coiled-coil 24.4 2.1E+02 0.0045 29.9 6.4 6 315-320 7-12 (132)
299 PF12037 DUF3523: Domain of un 24.2 9.7E+02 0.021 28.0 12.2 33 378-410 61-94 (276)
300 cd02667 Peptidase_C19K A subfa 24.1 34 0.00073 38.1 0.9 30 215-253 1-30 (279)
301 PF11214 Med2: Mediator comple 23.9 74 0.0016 31.9 3.1 6 454-459 94-99 (105)
302 PF12072 DUF3552: Domain of un 23.8 9.6E+02 0.021 26.1 12.1 19 392-410 18-36 (201)
303 PF07763 FEZ: FEZ-like protein 23.8 4.4E+02 0.0096 30.1 9.3 51 382-438 163-213 (244)
304 PF05672 MAP7: MAP7 (E-MAP-115 23.8 1.8E+02 0.0039 31.6 6.0 19 415-433 33-51 (171)
305 KOG2962 Prohibitin-related mem 23.7 8.6E+02 0.019 27.9 11.3 6 110-115 29-34 (322)
306 cd08045 TAF4 TATA Binding Prot 23.5 9.8E+02 0.021 26.2 11.8 12 335-346 48-59 (212)
307 KOG2223 Uncharacterized conser 23.5 1.7E+02 0.0037 35.9 6.4 8 518-525 356-363 (586)
308 KOG0267 Microtubule severing p 23.4 3E+02 0.0066 35.7 8.7 59 784-842 498-565 (825)
309 PRK01005 V-type ATP synthase s 23.2 4.1E+02 0.0089 29.4 8.9 14 396-409 15-28 (207)
310 PLN02381 valyl-tRNA synthetase 23.1 94 0.002 41.8 4.8 60 429-490 16-75 (1066)
311 PTZ00436 60S ribosomal protein 23.1 5.1E+02 0.011 30.6 9.7 6 433-438 159-164 (357)
312 KOG0949 Predicted helicase, DE 23.0 2.7E+02 0.0059 37.5 8.3 19 407-425 862-880 (1330)
313 cd07658 F-BAR_NOSTRIN The F-BA 22.8 1.1E+03 0.024 26.4 12.5 15 333-347 20-35 (239)
314 PF14738 PaaSYMP: Solute carri 22.8 4.1E+02 0.0088 28.3 8.4 11 384-394 75-85 (154)
315 KOG2572 Ribosome biogenesis pr 22.6 30 0.00064 41.5 0.1 11 272-282 290-300 (498)
316 cd08045 TAF4 TATA Binding Prot 22.6 2.7E+02 0.0059 30.5 7.4 6 424-429 126-131 (212)
317 COG5638 Uncharacterized conser 22.5 98 0.0021 37.3 4.2 19 496-514 524-544 (622)
318 PF08701 GN3L_Grn1: GNL3L/Grn1 22.4 1.9E+02 0.004 27.7 5.3 16 417-432 45-60 (79)
319 KOG2391 Vacuolar sorting prote 22.3 6.4E+02 0.014 30.3 10.4 48 403-450 211-261 (365)
320 PTZ00491 major vault protein; 22.1 1.5E+03 0.032 30.4 14.5 28 226-253 571-598 (850)
321 PF04568 IATP: Mitochondrial A 22.1 2.8E+02 0.0061 27.7 6.6 27 396-423 51-77 (100)
322 PLN03188 kinesin-12 family pro 22.0 7.6E+02 0.016 34.3 12.2 24 378-401 1090-1115(1320)
323 PLN03237 DNA topoisomerase 2; 21.9 1.9E+02 0.0041 40.2 7.1 17 335-351 1060-1076(1465)
324 PF09731 Mitofilin: Mitochondr 21.7 7.9E+02 0.017 30.6 12.0 9 231-239 119-127 (582)
325 KOG4709 Uncharacterized conser 21.3 3E+02 0.0064 30.6 7.1 14 512-525 121-134 (217)
326 PRK05689 fliJ flagellar biosyn 21.3 8.7E+02 0.019 24.6 11.6 69 402-470 71-139 (147)
327 PRK04654 sec-independent trans 21.1 6E+02 0.013 28.6 9.5 38 380-429 23-60 (214)
328 KOG2481 Protein required for n 21.0 1.8E+02 0.004 36.2 6.1 30 440-469 535-564 (570)
329 COG1390 NtpE Archaeal/vacuolar 20.9 5.5E+02 0.012 28.1 9.2 19 509-527 112-130 (194)
330 KOG0566 Inositol-1,4,5-triphos 20.7 6.8E+02 0.015 33.8 11.1 29 814-842 1015-1043(1080)
331 PF11675 DUF3271: Protein of u 20.3 36 0.00078 38.3 0.2 48 974-1021 49-104 (249)
332 PRK07720 fliJ flagellar biosyn 20.2 9.3E+02 0.02 24.5 11.1 12 439-450 112-123 (146)
333 PF10669 Phage_Gp23: Protein g 20.1 6.2E+02 0.014 25.4 8.3 13 493-505 104-116 (121)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.90 E-value=3.3e-23 Score=203.08 Aligned_cols=125 Identities=26% Similarity=0.493 Sum_probs=106.0
Q ss_pred ccEEEEEEccccccCCCeeeCCceeecCeEEEEEEEeCCCCC----CCeEEEEEEEecCCCCCCCCeEEEEEEEEEEeCC
Q 001172 67 YGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDV----CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRD 142 (1133)
Q Consensus 67 tGshtwkIdNFS~LKge~I~Sp~FsVGGhkWRI~~YPnG~~~----~dyLSLYLeL~s~~sl~p~WsV~AqFtf~LLNQd 142 (1133)
+++|+|+|.|||.+ ++.++|+.|.||||+|+|++||+|+.. .+||||||+|.... ....|++.|+|+|+|+|++
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 58999999999998 678999999999999999999999642 48999999997643 2347999999999999997
Q ss_pred CC-CceecccceecccCCCCcccccceeccccc---cCCccCCEEEEEEEEEEee
Q 001172 143 PK-KSKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 143 Gk-~S~skes~h~FsskesdWGfskFIkrsdLE---sGFLvDDsLTIeCdVtVIk 193 (1133)
+. +.......|.|......|||.+||+|++|+ ++||+||+|+|+|+|+|-+
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 43 333334557887667899999999999995 7999999999999999865
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.90 E-value=3.5e-23 Score=202.67 Aligned_cols=121 Identities=32% Similarity=0.702 Sum_probs=103.6
Q ss_pred EEEEEEccccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCeEEEEEEEecCCC----CCCCCeEEEEEEEEEEeCC-C
Q 001172 69 KYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDK----LLPGWSHFAQFTIAVVNRD-P 143 (1133)
Q Consensus 69 shtwkIdNFS~LKge~I~Sp~FsVGGhkWRI~~YPnG~~~~dyLSLYLeL~s~~s----l~p~WsV~AqFtf~LLNQd-G 143 (1133)
+|+|+|.|||.+ ++.+.|++|.||||+|+|++||+|+...+||||||++.+... .+++|.|+|+|.|+|+|+. +
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~ 80 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDP 80 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCC
Confidence 599999999996 678999999999999999999999876799999999976443 2468999999999999994 4
Q ss_pred CCceecccceecccCCCCcccccceeccccc-------cCCccCCEEEEEEEEE
Q 001172 144 KKSKYSDTLHRFWKKEHDWGWKKFMELSKVS-------DGFKDGDTLIIKAQVQ 190 (1133)
Q Consensus 144 k~S~skes~h~FsskesdWGfskFIkrsdLE-------sGFLvDDsLTIeCdVt 190 (1133)
..+......|.|.....+|||.+||++++|+ +|||+||+|+|+|.|.
T Consensus 81 ~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 81 SIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred ccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 3333345678998777899999999999997 5999999999999873
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.87 E-value=6.9e-22 Score=193.98 Aligned_cols=123 Identities=28% Similarity=0.516 Sum_probs=103.0
Q ss_pred ccEEEEEEccccccC---CCeeeCCceeecCe---EEEEEEEeCCCC--CCCeEEEEEEEecCCCCCCCCeEEEEEEEEE
Q 001172 67 YGKYTWRIEKFSQIS---KRELRSNAFEVGGY---KWYILIYPQGCD--VCNHLSLFLCVANHDKLLPGWSHFAQFTIAV 138 (1133)
Q Consensus 67 tGshtwkIdNFS~LK---ge~I~Sp~FsVGGh---kWRI~~YPnG~~--~~dyLSLYLeL~s~~sl~p~WsV~AqFtf~L 138 (1133)
..+|+|+|+|||.++ ++.+.|++|.|||| +|+|++||+|.. ..+||||||++.... .|.++|+|+|+|
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~l 79 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI 79 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEEE
Confidence 468999999999875 67899999999995 999999999974 368999999997532 367999999999
Q ss_pred EeCCCCCce--ecccceecccCCCCcccccceeccccc---cCCccCCEEEEEEEEEEeec
Q 001172 139 VNRDPKKSK--YSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIRE 194 (1133)
Q Consensus 139 LNQdGk~S~--skes~h~FsskesdWGfskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd 194 (1133)
+|+++.... .....+.|.. ..+|||.+||++++|+ ++||+||+|+|+|+|+|+++
T Consensus 80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 999876432 1234577864 5789999999999996 58999999999999999863
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.86 E-value=1.3e-21 Score=189.34 Aligned_cols=120 Identities=27% Similarity=0.512 Sum_probs=101.4
Q ss_pred cccEEEEEEccccccC--CCeeeCCceeecCeEEEEEEEeCCCCC--CCeEEEEEEEecCCCCCCCCeEEEEEEEEEEeC
Q 001172 66 LYGKYTWRIEKFSQIS--KRELRSNAFEVGGYKWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNR 141 (1133)
Q Consensus 66 ~tGshtwkIdNFS~LK--ge~I~Sp~FsVGGhkWRI~~YPnG~~~--~dyLSLYLeL~s~~sl~p~WsV~AqFtf~LLNQ 141 (1133)
...+|+|+|.|||.++ ++.+.|+.|.||||+|+|++||+|... .+||||||++.... .|.+.++|+|+|+|+
T Consensus 3 ~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~----~~~~~~~~~l~llnq 78 (132)
T cd03773 3 PYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL----GEASKYEYRVEMVHQ 78 (132)
T ss_pred CCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC----CCceeEEEEEEEEcC
Confidence 4678999999999985 578999999999999999999999753 68999999987642 367889999999999
Q ss_pred -CCCCceecccceecccCCCCcccccceeccccc-cCCccC--CEEEEEEEEE
Q 001172 142 -DPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVS-DGFKDG--DTLIIKAQVQ 190 (1133)
Q Consensus 142 -dGk~S~skes~h~FsskesdWGfskFIkrsdLE-sGFLvD--DsLTIeCdVt 190 (1133)
++..+......+.|.. ..+|||.+||++++|+ +|||+| |+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 79 ANPTKNIKREFASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCccceEEeccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 5544443445677865 4679999999999998 799999 9999999985
No 5
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.86 E-value=1.3e-21 Score=194.49 Aligned_cols=123 Identities=24% Similarity=0.454 Sum_probs=98.6
Q ss_pred cEEEEEEccccccC-----CC--eeeCCceee--cCeEEEEEEEeCCCCC--CCeEEEEEEEecCCCC-CCCCeEEEEEE
Q 001172 68 GKYTWRIEKFSQIS-----KR--ELRSNAFEV--GGYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtwkIdNFS~LK-----ge--~I~Sp~FsV--GGhkWRI~~YPnG~~~--~dyLSLYLeL~s~~sl-~p~WsV~AqFt 135 (1133)
|+|+|+|.|||.++ ++ .|+|+.|.+ |||+|+|+|||+|... .+||||||+|+..... ...|.+.|+|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 68999999999754 34 488999985 7999999999999863 6899999999875432 23699999999
Q ss_pred EEEEeCCCCCc-ee-----cccceeccc-----CCCCcccccceeccccc-cCCccCCEEEEEEEEE
Q 001172 136 IAVVNRDPKKS-KY-----SDTLHRFWK-----KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQ 190 (1133)
Q Consensus 136 f~LLNQdGk~S-~s-----kes~h~Fss-----kesdWGfskFIkrsdLE-sGFLvDDsLTIeCdVt 190 (1133)
|+|+||++... .. ....+.|.. .+..|||.+||++++|+ .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999986422 11 112355753 24679999999999999 6899999999999984
No 6
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.86 E-value=1.8e-21 Score=192.37 Aligned_cols=122 Identities=28% Similarity=0.507 Sum_probs=99.2
Q ss_pred cEEEEEEccccccC-------CCeeeCCceeec--CeEEEEEEEeCCCC--CCCeEEEEEEEecCCCC-CCCCeEEEEEE
Q 001172 68 GKYTWRIEKFSQIS-------KRELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtwkIdNFS~LK-------ge~I~Sp~FsVG--GhkWRI~~YPnG~~--~~dyLSLYLeL~s~~sl-~p~WsV~AqFt 135 (1133)
|+|+|+|.|||.++ ++.++|+.|+|| ||+|+|+|||+|.. ..+||||||++.+...+ ...|.+.|+|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 68999999999974 358999999999 99999999999975 36799999999876432 34699999999
Q ss_pred EEEEeCCCC---Cceecc-----cceecc-----cCCCCcccccceeccccc-cCCccCCEEEEEEEE
Q 001172 136 IAVVNRDPK---KSKYSD-----TLHRFW-----KKEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 f~LLNQdGk---~S~ske-----s~h~Fs-----skesdWGfskFIkrsdLE-sGFLvDDsLTIeCdV 189 (1133)
|+|+|+.+. .+.... ..+.|. ....+|||.+||++++|+ .+||+||+|+|+|+|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 999999763 221111 234564 135789999999999999 589999999999998
No 7
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.6e-22 Score=234.71 Aligned_cols=241 Identities=25% Similarity=0.461 Sum_probs=188.7
Q ss_pred ccccEEEEEEccccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCeEEEEEEEecCCCC--C-CCCeEEEEEEEEEEeC
Q 001172 65 ELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKL--L-PGWSHFAQFTIAVVNR 141 (1133)
Q Consensus 65 ~~tGshtwkIdNFS~LKge~I~Sp~FsVGGhkWRI~~YPnG~~~~dyLSLYLeL~s~~sl--~-p~WsV~AqFtf~LLNQ 141 (1133)
.....|+|+|.+||.+.. ...|+.|.||||.|+|.++|.|+...+ +||||+....... . ..|.|+|+|.|.|-|.
T Consensus 36 ~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~~-~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p 113 (1089)
T COG5077 36 LLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQCN-VSVYLEYEPQELEETGGKYYDCCAQFAFDISNP 113 (1089)
T ss_pred HhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCccc-cEEEEEeccchhhhhcCcchhhhhheeeecCCC
Confidence 456789999999999865 578999999999999999999988666 9999998643211 1 2499999999999887
Q ss_pred -CCCCceecccceecccCCCCcccccceeccccc------cCCccCCEEEEEEEEEEeeccCCCCc-cccccccccceee
Q 001172 142 -DPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVS------DGFKDGDTLIIKAQVQVIREKTDRPF-RCLDCQYRRELVR 213 (1133)
Q Consensus 142 -dGk~S~skes~h~FsskesdWGfskFIkrsdLE------sGFLvDDsLTIeCdVtVIkd~~~~~~-r~ld~dskk~tI~ 213 (1133)
++.........|+|+....+|||.+||.+..|. ..|+.+|.+.|.+.|.|++++++... ..++|++++++++
T Consensus 114 ~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTGY 193 (1089)
T COG5077 114 KYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGY 193 (1089)
T ss_pred CCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccccceee
Confidence 332223346789999888999999999999887 25899999999999999999887542 2348999999999
Q ss_pred ecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhhhhhHHHHHH
Q 001172 214 VYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSL 293 (1133)
Q Consensus 214 VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ff~~keVtSplvmd~L 293 (1133)
|++.|+|+|| ||++|||+...+..||.....++...- .+-|.+ ++..+.+
T Consensus 194 VGlrNqGATC---------YmNSLlQslffi~~FRk~Vy~ipTd~p-----~grdSV----------------alaLQr~ 243 (1089)
T COG5077 194 VGLRNQGATC---------YMNSLLQSLFFIAKFRKDVYGIPTDHP-----RGRDSV----------------ALALQRL 243 (1089)
T ss_pred eeeccCCcee---------eHHHHHHHHHHHHHHHHHhhcCCCCCC-----CccchH----------------HHHHHHH
Confidence 9999999999 999999999877778877666653210 121222 6677777
Q ss_pred hhcccccccccccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCC
Q 001172 294 YSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPL 349 (1133)
Q Consensus 294 ~~glk~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~L 349 (1133)
|.-|+..+. -++|-||..++.|..-|.|. ..|+. -+.|+.-|.|
T Consensus 244 Fynlq~~~~----------PvdTteltrsfgWds~dsf~-QHDiq-EfnrVl~DnL 287 (1089)
T COG5077 244 FYNLQTGEE----------PVDTTELTRSFGWDSDDSFM-QHDIQ-EFNRVLQDNL 287 (1089)
T ss_pred HHHHhccCC----------CcchHHhhhhcCcccchHHH-HHhHH-HHHHHHHHHH
Confidence 777776654 37888898888888777776 44666 5677766665
No 8
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.85 E-value=7e-21 Score=191.49 Aligned_cols=122 Identities=22% Similarity=0.415 Sum_probs=99.1
Q ss_pred cEEEEEEccccccC-------CCeeeCCceeec--CeEEEEEEEeCCCCC--CCeEEEEEEEecCCCCC-CCCeEEEEEE
Q 001172 68 GKYTWRIEKFSQIS-------KRELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKLL-PGWSHFAQFT 135 (1133)
Q Consensus 68 GshtwkIdNFS~LK-------ge~I~Sp~FsVG--GhkWRI~~YPnG~~~--~dyLSLYLeL~s~~sl~-p~WsV~AqFt 135 (1133)
|+|.|+|.|||.++ +..|.|+.|.+| ||+|+|++||+|... .+||||||+|+..+... ..|.+.++|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 68999999999875 258999999999 999999999999753 68999999998754322 3799999999
Q ss_pred EEEEeCCCCC-----cee-c----ccceeccc--------CCCCcccccceeccccc-cCCccCCEEEEEEEE
Q 001172 136 IAVVNRDPKK-----SKY-S----DTLHRFWK--------KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 f~LLNQdGk~-----S~s-k----es~h~Fss--------kesdWGfskFIkrsdLE-sGFLvDDsLTIeCdV 189 (1133)
|+|+||.+.. ... . .....|.. .+..|||.+||++++|+ .+||+||+|+|+|+|
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 9999997641 110 0 11345542 33579999999999999 799999999999998
No 9
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.83 E-value=3e-20 Score=187.03 Aligned_cols=122 Identities=23% Similarity=0.409 Sum_probs=100.3
Q ss_pred cEEEEEEccccccC-----CC--eeeCCce--eecCeEEEEEEEeCCCCC--CCeEEEEEEEecCCCC-CCCCeEEEEEE
Q 001172 68 GKYTWRIEKFSQIS-----KR--ELRSNAF--EVGGYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtwkIdNFS~LK-----ge--~I~Sp~F--sVGGhkWRI~~YPnG~~~--~dyLSLYLeL~s~~sl-~p~WsV~AqFt 135 (1133)
|+|+|+|+|||+++ ++ .+.|+.| .+|||+|+|++||||... ++||||||+|+..+.+ ...|.+.++|+
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 68999999999986 34 7999999 999999999999999863 6799999999875322 23699999999
Q ss_pred EEEEeCCCCCce--ec----ccceecccC----CCCcccccceecccccc---CCccCCEEEEEEEE
Q 001172 136 IAVVNRDPKKSK--YS----DTLHRFWKK----EHDWGWKKFMELSKVSD---GFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 f~LLNQdGk~S~--sk----es~h~Fssk----esdWGfskFIkrsdLEs---GFLvDDsLTIeCdV 189 (1133)
|.|+||++++.. .. ...+.|... +..||+.+||++++|+. +||+||+|+|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999765321 11 124668654 45799999999999983 89999999999987
No 10
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.83 E-value=4.5e-20 Score=192.06 Aligned_cols=126 Identities=22% Similarity=0.392 Sum_probs=101.6
Q ss_pred ccccEEEEEEccccccC-----CC--eeeCCceeec--CeEEEEEEEeCCCC--CCCeEEEEEEEecCCCC-CCCCeEEE
Q 001172 65 ELYGKYTWRIEKFSQIS-----KR--ELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtwkIdNFS~LK-----ge--~I~Sp~FsVG--GhkWRI~~YPnG~~--~~dyLSLYLeL~s~~sl-~p~WsV~A 132 (1133)
...|+|+|+|.|||.++ ++ .++|+.|++| ||+|+|++||+|.. .++||||||+|+.+..+ ...|.|.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 45799999999999875 34 7999999999 99999999999986 36799999999875422 23699999
Q ss_pred EEEEEEEeCCCCC-ce----e-cccceecc-cC---CCCcccccceeccccc-cCCccCCEEEEEEEEE
Q 001172 133 QFTIAVVNRDPKK-SK----Y-SDTLHRFW-KK---EHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQ 190 (1133)
Q Consensus 133 qFtf~LLNQdGk~-S~----s-kes~h~Fs-sk---esdWGfskFIkrsdLE-sGFLvDDsLTIeCdVt 190 (1133)
+|+|.|+||++.. .. . ....+.|. .. +..|||.+||++++|+ ++||+||+|+|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEe
Confidence 9999999997521 11 0 01235575 22 4579999999999999 6899999999999885
No 11
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.82 E-value=1.1e-19 Score=168.51 Aligned_cols=123 Identities=38% Similarity=0.694 Sum_probs=102.1
Q ss_pred cEEEEEEccccccCCCeeeCCceeecCeEEEEEEEeCCCCC-CCeEEEEEEEecCCCCCCCCeEEEEEEEEEEeCCCCCc
Q 001172 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDV-CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKS 146 (1133)
Q Consensus 68 GshtwkIdNFS~LKge~I~Sp~FsVGGhkWRI~~YPnG~~~-~dyLSLYLeL~s~~sl~p~WsV~AqFtf~LLNQdGk~S 146 (1133)
++|+|+|.+|+...++.+.|+.|.++|+.|+|++||+|... .+||||||+|.........|.+.|+|+|.|+|+++.+.
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 47999999999866788999999999999999999998643 57999999998665433469999999999999985444
Q ss_pred eecccceecc-cCCCCcccccceeccccccCC-ccCCEEEEEEEEE
Q 001172 147 KYSDTLHRFW-KKEHDWGWKKFMELSKVSDGF-KDGDTLIIKAQVQ 190 (1133)
Q Consensus 147 ~skes~h~Fs-skesdWGfskFIkrsdLEsGF-LvDDsLTIeCdVt 190 (1133)
......+.|. ....+|||.+||+|++|++.+ ++||+|+|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 81 LSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred ceEeccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 4444444553 456899999999999999655 9999999999984
No 12
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.81 E-value=1.1e-19 Score=182.90 Aligned_cols=122 Identities=25% Similarity=0.415 Sum_probs=98.8
Q ss_pred cEEEEEEccccccC-----C--CeeeCCceeec--CeEEEEEEEeCCCCC--CCeEEEEEEEecCCCC-CCCCeEEEEEE
Q 001172 68 GKYTWRIEKFSQIS-----K--RELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1133)
Q Consensus 68 GshtwkIdNFS~LK-----g--e~I~Sp~FsVG--GhkWRI~~YPnG~~~--~dyLSLYLeL~s~~sl-~p~WsV~AqFt 135 (1133)
|+|+|+|.||++.. + ..++|+.|+.+ ||+|+|++||||... ++||||||+|+....+ ...|.|.++|+
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 68999999999753 2 36999999986 999999999999863 6899999999865321 23699999999
Q ss_pred EEEEeCCCCCcee--ccc---ceecc----cCCCCcccccceecccccc---CCccCCEEEEEEEE
Q 001172 136 IAVVNRDPKKSKY--SDT---LHRFW----KKEHDWGWKKFMELSKVSD---GFKDGDTLIIKAQV 189 (1133)
Q Consensus 136 f~LLNQdGk~S~s--kes---~h~Fs----skesdWGfskFIkrsdLEs---GFLvDDsLTIeCdV 189 (1133)
|.|+||++.+... ... .+.|. ..+..|||.+||++++|+. +||+||+|+|+|+|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 9999998654321 111 36686 3345799999999999994 89999999999998
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.74 E-value=1.2e-17 Score=171.41 Aligned_cols=122 Identities=25% Similarity=0.508 Sum_probs=94.8
Q ss_pred cEEEEEEccccccC-----CCeeeCCce-eecCeEEEEEEEeCCCC-CCCeEEEEEEEecCCCC-CCCCe-EEEEEEEEE
Q 001172 68 GKYTWRIEKFSQIS-----KRELRSNAF-EVGGYKWYILIYPQGCD-VCNHLSLFLCVANHDKL-LPGWS-HFAQFTIAV 138 (1133)
Q Consensus 68 GshtwkIdNFS~LK-----ge~I~Sp~F-sVGGhkWRI~~YPnG~~-~~dyLSLYLeL~s~~sl-~p~Ws-V~AqFtf~L 138 (1133)
.+|+|+|.|||.++ +..++|+.| ++|||+|+|++||+|.. .++||||||+|+..... ...|. +.|+|+|+|
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~L 81 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTL 81 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEE
Confidence 47999999999985 358999999 99999999999999976 46799999999875432 34688 689999999
Q ss_pred EeCCCC----Cceec----c----c----ceeccc-----------------CCCCcccccceeccccc-cCCccCCEEE
Q 001172 139 VNRDPK----KSKYS----D----T----LHRFWK-----------------KEHDWGWKKFMELSKVS-DGFKDGDTLI 184 (1133)
Q Consensus 139 LNQdGk----~S~sk----e----s----~h~Fss-----------------kesdWGfskFIkrsdLE-sGFLvDDsLT 184 (1133)
+||++. .+.+. + . ...|.. .+.+|||..||++++|+ ..||+||+|.
T Consensus 82 lDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~dtl~ 161 (167)
T cd03771 82 LDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGDDLI 161 (167)
T ss_pred ECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCCEEE
Confidence 999631 11111 0 0 011211 23479999999999999 5799999999
Q ss_pred EEEEE
Q 001172 185 IKAQV 189 (1133)
Q Consensus 185 IeCdV 189 (1133)
|+++|
T Consensus 162 i~~~~ 166 (167)
T cd03771 162 ILLDF 166 (167)
T ss_pred EEEEe
Confidence 99986
No 14
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.73 E-value=7.4e-18 Score=157.35 Aligned_cols=115 Identities=29% Similarity=0.561 Sum_probs=94.7
Q ss_pred EccccccC-C-CeeeCCceeecCeEEEEEEEeCCCCCCCeEEEEEEEecCCCCC-CCCeEEEEEEEEEEeCCCCCceecc
Q 001172 74 IEKFSQIS-K-RELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLL-PGWSHFAQFTIAVVNRDPKKSKYSD 150 (1133)
Q Consensus 74 IdNFS~LK-g-e~I~Sp~FsVGGhkWRI~~YPnG~~~~dyLSLYLeL~s~~sl~-p~WsV~AqFtf~LLNQdGk~S~ske 150 (1133)
|+|||+++ + ..+.|+.|.+||++|+|.+||+|. .+||++||+|....... ..|+|.|+|+|.|+++.+.......
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~--~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 78 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN--GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRI 78 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES--TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC--cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeee
Confidence 78999997 3 345568999999999999999986 67999999999875442 4799999999999999876522222
Q ss_pred cceecccCCCCcccccceeccccccC-CccCCEEEEEEEEEE
Q 001172 151 TLHRFWKKEHDWGWKKFMELSKVSDG-FKDGDTLIIKAQVQV 191 (1133)
Q Consensus 151 s~h~FsskesdWGfskFIkrsdLEsG-FLvDDsLTIeCdVtV 191 (1133)
..+.|... .+|||.+||+|++|++. ||+||+|+|+|+|+|
T Consensus 79 ~~~~F~~~-~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 79 KSHSFNNP-SSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp ECEEECTT-SEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred eeeEEeee-cccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 25888764 88999999999999964 799999999999986
No 15
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.66 E-value=5.5e-16 Score=158.90 Aligned_cols=125 Identities=26% Similarity=0.422 Sum_probs=100.0
Q ss_pred ccccEEEEEEccccccC-----C--CeeeCCceee--cCeEEEEEEEeCCCCC--CCeEEEEEEEecCCCCC-CCCeEEE
Q 001172 65 ELYGKYTWRIEKFSQIS-----K--RELRSNAFEV--GGYKWYILIYPQGCDV--CNHLSLFLCVANHDKLL-PGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtwkIdNFS~LK-----g--e~I~Sp~FsV--GGhkWRI~~YPnG~~~--~dyLSLYLeL~s~~sl~-p~WsV~A 132 (1133)
...|+|+|+|.||+.+. + ..++|+.|+. +||+|+|++||+|+.. +.||||||+++.++.+. ..|.+..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 45799999999999875 2 3699999986 5899999999999864 67999999999887654 6899999
Q ss_pred EEEEEEEeCCCCCceec----c-cceecc----cCCCCcccccceeccccc--cCCccCCEEEEEEEE
Q 001172 133 QFTIAVVNRDPKKSKYS----D-TLHRFW----KKEHDWGWKKFMELSKVS--DGFKDGDTLIIKAQV 189 (1133)
Q Consensus 133 qFtf~LLNQdGk~S~sk----e-s~h~Fs----skesdWGfskFIkrsdLE--sGFLvDDsLTIeCdV 189 (1133)
+++|+|+||+....... + ....|. ..+..|||..||++++|+ .+||+||+|.|+|.|
T Consensus 96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence 99999999965332211 1 112342 234579999999999997 589999999999987
No 16
>smart00061 MATH meprin and TRAF homology.
Probab=99.60 E-value=5.2e-15 Score=132.75 Aligned_cols=93 Identities=26% Similarity=0.411 Sum_probs=79.2
Q ss_pred EEEEEccccccC-CCeeeCCceeecCeEEEEEEEeCCCCCCCeEEEEEEEecCCCCCCCCeEEEEEEEEEEeCCCCCcee
Q 001172 70 YTWRIEKFSQIS-KRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKY 148 (1133)
Q Consensus 70 htwkIdNFS~LK-ge~I~Sp~FsVGGhkWRI~~YPnG~~~~dyLSLYLeL~s~~sl~p~WsV~AqFtf~LLNQdGk~S~s 148 (1133)
++|+|.+|+.+. ++.+.|+.|.+|||.|+|++||+ .+||||||+|.........|.|.|+|+|+|+|++++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~----~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~-~ 76 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK----NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL-S 76 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc----CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE-e
Confidence 679999999984 68899999999999999999999 48999999998665443479999999999999987643 3
Q ss_pred cccceecccCCCCcccccce
Q 001172 149 SDTLHRFWKKEHDWGWKKFM 168 (1133)
Q Consensus 149 kes~h~FsskesdWGfskFI 168 (1133)
....+.|.. ..+|||.+||
T Consensus 77 ~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 77 KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred eeeeEEEcC-CCccceeeEC
Confidence 445788876 6889999986
No 17
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.33 E-value=5.3e-12 Score=129.93 Aligned_cols=121 Identities=29% Similarity=0.538 Sum_probs=93.6
Q ss_pred EEEEEEccccccC-----CCeeeCCceee-cCeEEEEEEEeCCCC---CCCeEEEEEEEecCCCC-CCCCeEE-EEEEEE
Q 001172 69 KYTWRIEKFSQIS-----KRELRSNAFEV-GGYKWYILIYPQGCD---VCNHLSLFLCVANHDKL-LPGWSHF-AQFTIA 137 (1133)
Q Consensus 69 shtwkIdNFS~LK-----ge~I~Sp~FsV-GGhkWRI~~YPnG~~---~~dyLSLYLeL~s~~sl-~p~WsV~-AqFtf~ 137 (1133)
.|+|+|.||+++. ...++|+.|+. .||+.+|++||+|.. .+.|||||++++.++.+ ...|.+. -+++|.
T Consensus 3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~ 82 (167)
T cd03783 3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIIT 82 (167)
T ss_pred ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEE
Confidence 5899999999864 35799999988 499999999999975 36799999999987654 3479964 589999
Q ss_pred EEeCCCC----Cce----ecc---c------ceeccc--------------CCCCcccccceeccccc-cCCccCCEEEE
Q 001172 138 VVNRDPK----KSK----YSD---T------LHRFWK--------------KEHDWGWKKFMELSKVS-DGFKDGDTLII 185 (1133)
Q Consensus 138 LLNQdGk----~S~----ske---s------~h~Fss--------------kesdWGfskFIkrsdLE-sGFLvDDsLTI 185 (1133)
|+||++. .+. ... . ...|.+ .+.+|||..||.++.|+ .+||+||+|.|
T Consensus 83 llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlfI 162 (167)
T cd03783 83 VLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLII 162 (167)
T ss_pred EEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEEE
Confidence 9999741 111 001 0 011332 23579999999999999 78999999999
Q ss_pred EEEE
Q 001172 186 KAQV 189 (1133)
Q Consensus 186 eCdV 189 (1133)
.+++
T Consensus 163 ~~~~ 166 (167)
T cd03783 163 FVDF 166 (167)
T ss_pred EEec
Confidence 9876
No 18
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.2e-12 Score=162.27 Aligned_cols=236 Identities=22% Similarity=0.244 Sum_probs=170.0
Q ss_pred cEEEEEEccccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCeEEEEEEEecCCCCCCCCeEEEEEEEEEEeC-CCCCc
Q 001172 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNR-DPKKS 146 (1133)
Q Consensus 68 GshtwkIdNFS~LKge~I~Sp~FsVGGhkWRI~~YPnG~~~~dyLSLYLeL~s~~sl~p~WsV~AqFtf~LLNQ-dGk~S 146 (1133)
..++|.+.+...+.. ...++.|..|+..|+|++.|+++ ....+++||.|...... ..|++++++.+.++|. +....
T Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~ 103 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVN-SLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLPD 103 (1093)
T ss_pred ccccccCcCcchhhh-HhcCccccccccceeeeeccccC-cccceeEEeeeccCCCC-cceEecchhhhccccCCCCchh
Confidence 334466655555444 67899999999999999999987 45789999999876654 4599999999999993 22222
Q ss_pred eecccceecccCCCCcccccceeccccc---cCCccCCEEEEEEEEEEeeccCCCCccccccccccceee-ecCCchHHH
Q 001172 147 KYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVR-VYLTNVEQI 222 (1133)
Q Consensus 147 ~skes~h~FsskesdWGfskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd~~~~~~r~ld~dskk~tI~-VPpSNLgaT 222 (1133)
......|.|.....+|||.+|+.+++|. .+|+++|++.+++.|.|...+... ..||.++.+++ |++.|+|+|
T Consensus 104 ~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~----~~~d~k~~tg~~vGL~N~GaT 179 (1093)
T KOG1863|consen 104 PEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLM----NPYDSKRLTGFPVGLKNLGAT 179 (1093)
T ss_pred hhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCccc----chhhhhhcCCCCccccCCCce
Confidence 3346789999889999999999999998 599999999999999998875431 36888899998 999999999
Q ss_pred HhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhhhhhHHHHHHhhccccccc
Q 001172 223 CRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEG 302 (1133)
Q Consensus 223 C~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ff~~keVtSplvmd~L~~glk~le~ 302 (1133)
| |++.|||+..-...||.-++.+.+... ...+. + .-++.|+.||.-|+.-..
T Consensus 180 C---------Y~NsllQ~lf~~~~FR~~Vy~~~~~~~---~~~~~--------------~--~v~~~lq~lF~~LQ~s~~ 231 (1093)
T KOG1863|consen 180 C---------YVNSLLQVLFLIPEFRRAVYSIPPFTG---HEDPR--------------R--SIPLALQRLFYELQMSKR 231 (1093)
T ss_pred e---------eehHHHHHHHccHHHHHHHhcCCCCCC---ccccc--------------c--hHHHHHHHHHHHHhhcCC
Confidence 9 999999998888888887777664111 11110 0 126678888888876522
Q ss_pred ccccccccccccccCCCCCCceEeecceee------ehhhHHHHHHHhhcC
Q 001172 303 QSKSKKTKAKLLDAEDTPPPIVHVENDMFV------LVDDVLLLLERAALE 347 (1133)
Q Consensus 303 ~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~------l~~Dll~~leR~al~ 347 (1133)
+.++|.++.....+...+.|. |..-++..||+...+
T Consensus 232 ---------k~Vdt~~~~~~~~~~~~~~~~QqDvqEf~~~l~d~LE~~~~~ 273 (1093)
T KOG1863|consen 232 ---------KYVDTSELTKSLGWDSNDSFEQQDVQEFLTKLLDWLEDSMID 273 (1093)
T ss_pred ---------CCcCchhhhhhhhcccccHHhhhhHHHHHHHHHHHHHhhccc
Confidence 356666664333322212222 333444566666433
No 19
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.27 E-value=1.8e-11 Score=125.74 Aligned_cols=122 Identities=20% Similarity=0.394 Sum_probs=94.8
Q ss_pred cEEEEEEccccccC-----CCeeeCCceee-cCeEEEEEEEeCCCCC-CCeEEEEEEEecCCCC-CCCCeEE-EEEEEEE
Q 001172 68 GKYTWRIEKFSQIS-----KRELRSNAFEV-GGYKWYILIYPQGCDV-CNHLSLFLCVANHDKL-LPGWSHF-AQFTIAV 138 (1133)
Q Consensus 68 GshtwkIdNFS~LK-----ge~I~Sp~FsV-GGhkWRI~~YPnG~~~-~dyLSLYLeL~s~~sl-~p~WsV~-AqFtf~L 138 (1133)
-.|+|+|.||+++. ...++|+.|+. .||+.+|.+||+|.+. +.|||||++|+.++.+ ...|.+. -+++|.|
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~L 81 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMML 81 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEE
Confidence 35899999999864 35799999975 7999999999999753 5799999999987654 3479999 8999999
Q ss_pred EeCCC---C-Cceec------c---c-ceec--ccC-----------------CCCcccccceeccccc-cCCccCCEEE
Q 001172 139 VNRDP---K-KSKYS------D---T-LHRF--WKK-----------------EHDWGWKKFMELSKVS-DGFKDGDTLI 184 (1133)
Q Consensus 139 LNQdG---k-~S~sk------e---s-~h~F--ssk-----------------esdWGfskFIkrsdLE-sGFLvDDsLT 184 (1133)
+||++ + .+... . . ...| ... +.+|||..||++++|+ ..||+||.|.
T Consensus 82 lDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~if 161 (167)
T cd03782 82 LDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDDVI 161 (167)
T ss_pred EcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCeEE
Confidence 99974 1 12111 0 0 1134 211 4689999999999999 6899999999
Q ss_pred EEEEE
Q 001172 185 IKAQV 189 (1133)
Q Consensus 185 IeCdV 189 (1133)
|-+++
T Consensus 162 i~~~~ 166 (167)
T cd03782 162 FLLTM 166 (167)
T ss_pred EEEec
Confidence 98775
No 20
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.67 E-value=0.00021 Score=78.65 Aligned_cols=116 Identities=32% Similarity=0.653 Sum_probs=88.9
Q ss_pred EEEEEccccccCCCeeeCCceeecCeEEEEEEEeCCCCCCCeEEEEEEEecCCCCCCCCeEEEEEEEEEEeCCCCCc-ee
Q 001172 70 YTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKS-KY 148 (1133)
Q Consensus 70 htwkIdNFS~LKge~I~Sp~FsVGGhkWRI~~YPnG~~~~dyLSLYLeL~s~~sl~p~WsV~AqFtf~LLNQdGk~S-~s 148 (1133)
+.|.|.+|+... -.++|..|..||..|++.+||.|+ |+++|+.+.... +|.+.+.|.|.+.|+..... ..
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~ 76 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN----YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLST 76 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC----EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeee
Confidence 338999998765 668899999999999999999984 899999886543 69999999999999966532 22
Q ss_pred c-ccceecccC--CCCcccccceeccccc---cCCccCCEEEEEEEEEEeec
Q 001172 149 S-DTLHRFWKK--EHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIRE 194 (1133)
Q Consensus 149 k-es~h~Fssk--esdWGfskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd 194 (1133)
. .....|... ...||+..++....+. .||+.++.++|-+.+.|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~ 128 (297)
T KOG1987|consen 77 VEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEA 128 (297)
T ss_pred eeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceee
Confidence 2 233344332 4689998888877776 58999988888777776654
No 21
>PHA03098 kelch-like protein; Provisional
Probab=96.66 E-value=0.00032 Score=83.16 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=93.4
Q ss_pred cccchhhhhh--hhhhhcchhhh---hhhHHHHHHhhccc--cccc--ccccccccccccccCCCCCCceEeecceeeeh
Q 001172 264 REKTDAILKV--VVKHFFIEKEV---TSTLVMDSLYSGLK--ALEG--QSKSKKTKAKLLDAEDTPPPIVHVENDMFVLV 334 (1133)
Q Consensus 264 ~e~sDVilkV--~~k~Ff~~keV---tSplvmd~L~~glk--~le~--~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~ 334 (1133)
++.+||+|.+ .+++|.+||.| +|++|..=+.++|+ .++- ....++.+++++|++++. +..+ -+
T Consensus 7 ~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~~~~~~~~~l~y~Ytg~~~-----i~~~---~~ 78 (534)
T PHA03098 7 QKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNIDYDSFNEVIKYIYTGKIN-----ITSN---NV 78 (534)
T ss_pred CCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecCCHHHHHHHHHHhcCCceE-----EcHH---HH
Confidence 4569999998 99999999987 66777654444553 1111 112377788999998863 2222 27
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Q 001172 335 DDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIEVAYQE 409 (1133)
Q Consensus 335 ~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E 409 (1133)
.|||.+++++.++.|.. .|.+.+.+. ++.++.. -+.++|.+|...|+++.. ++|. ++.-+|
T Consensus 79 ~~ll~~A~~l~~~~l~~---~C~~~l~~~------l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~---~v~~~~ 144 (534)
T PHA03098 79 KDILSIANYLIIDFLIN---LCINYIIKI------IDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIE---LIYNDP 144 (534)
T ss_pred HHHHHHHHHhCcHHHHH---HHHHHHHHh------CCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHH---HHhcCc
Confidence 89999999999999986 688888776 5555533 289999999999999976 5564 334445
Q ss_pred HHHHHHHHHH
Q 001172 410 AVALKRQEEL 419 (1133)
Q Consensus 410 ~~A~~rQ~~L 419 (1133)
.+..+-.+.|
T Consensus 145 ~f~~l~~~~l 154 (534)
T PHA03098 145 DFIYLSKNEL 154 (534)
T ss_pred hhhcCCHHHH
Confidence 5555544433
No 22
>PHA02713 hypothetical protein; Provisional
Probab=96.56 E-value=0.00078 Score=81.46 Aligned_cols=134 Identities=13% Similarity=0.009 Sum_probs=88.9
Q ss_pred cchhhhhhh-hhhhcchhhh---hhhHHHHHHhhccccc--------cccc-ccccccccccccCCCCCCceEeecceee
Q 001172 266 KTDAILKVV-VKHFFIEKEV---TSTLVMDSLYSGLKAL--------EGQS-KSKKTKAKLLDAEDTPPPIVHVENDMFV 332 (1133)
Q Consensus 266 ~sDVilkV~-~k~Ff~~keV---tSplvmd~L~~glk~l--------e~~t-~~~k~~~~~~~t~e~p~~~~~v~~d~~~ 332 (1133)
.+||+|.|. ++.|.+||.| .|++|..=+-++|+.- ..-+ ..++.++.++||..+. .+
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i~-------~~--- 94 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHIS-------SM--- 94 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCCC-------HH---
Confidence 589999998 8999999988 5566544333455421 1111 1256668899997642 11
Q ss_pred ehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHHHHH
Q 001172 333 LVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 333 l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~rv~~Ay 407 (1133)
-+.|||.+++.+.++.|.. .|.+.+.+. ++.++.- -+.+.|.+|..++.+|. .++|. +++-
T Consensus 95 nv~~ll~aA~~lqi~~l~~---~C~~~l~~~------l~~~NCl~i~~~~~~~~~~~L~~~a~~~i--~~~f~---~v~~ 160 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVT---DCESYIKDY------TNHDTCIYMYHRLYEMSHIPIVKYIKRML--MSNIP---TLIT 160 (557)
T ss_pred HHHHHHHHHHHHCHHHHHH---HHHHHHHhh------CCccchHHHHHHHHhccchHHHHHHHHHH--HHHHH---HHhC
Confidence 3799999999999999986 688888776 5544422 15566677776665554 47775 5555
Q ss_pred HHHHHHHHHHHHHHHH
Q 001172 408 QEAVALKRQEELIREE 423 (1133)
Q Consensus 408 ~E~~A~~rQ~~Ll~E~ 423 (1133)
+|.|..+..++|++=+
T Consensus 161 ~~ef~~L~~~~l~~lL 176 (557)
T PHA02713 161 TDAFKKTVFEILFDII 176 (557)
T ss_pred ChhhhhCCHHHHHHHh
Confidence 6777776666665433
No 23
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.012 Score=72.18 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 399 FSNKIEVAYQEAVA-LKRQEELIREEEAAWLAESEQKAK 436 (1133)
Q Consensus 399 F~~rv~~Ay~E~~A-~~rQ~~Ll~E~E~e~~~~~e~~~k 436 (1133)
|+.+-+.-|.-+.| ++|+.+.|+|.+..+|++.|+|+|
T Consensus 314 FEDKrkeNy~kGqaELerRRq~leeqqqreree~eqkEr 352 (1118)
T KOG1029|consen 314 FEDKRKENYEKGQAELERRRQALEEQQQREREEVEQKER 352 (1118)
T ss_pred hhhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444 334455555554444444444333
No 24
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.22 E-value=0.048 Score=65.42 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001172 416 QEELIREEEAAWLAESEQKAKRGA-AEKEKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 416 Q~~Ll~E~E~e~~~~~e~~~kk~~-k~kekk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
|.+-..|++++++.+.||++++.. .+++|+..++..+++|+.|+++||..||+
T Consensus 211 qi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ 264 (591)
T KOG2412|consen 211 QIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEER 264 (591)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444556666777777666654 55556666666777888888888844443
No 25
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.22 E-value=0.014 Score=70.85 Aligned_cols=7 Identities=29% Similarity=-0.054 Sum_probs=3.6
Q ss_pred CCCCCcc
Q 001172 499 EKPDVLE 505 (1133)
Q Consensus 499 ~k~d~~e 505 (1133)
.|+++.-
T Consensus 380 qk~~~k~ 386 (811)
T KOG4364|consen 380 QKIDNKF 386 (811)
T ss_pred ccccccc
Confidence 5555543
No 26
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=95.93 E-value=0.074 Score=64.96 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=7.3
Q ss_pred ccCCCCCCCCCccc
Q 001172 493 DAQPLPEKPDVLED 506 (1133)
Q Consensus 493 ~~~~~~~k~d~~e~ 506 (1133)
=.|.+-.|--+..+
T Consensus 378 ffqk~~~k~~~~~~ 391 (811)
T KOG4364|consen 378 FFQKIDNKFSTTCE 391 (811)
T ss_pred hhcccccccCCccc
Confidence 34566666534444
No 27
>PTZ00121 MAEBL; Provisional
Probab=95.93 E-value=0.043 Score=71.23 Aligned_cols=6 Identities=33% Similarity=1.165 Sum_probs=2.9
Q ss_pred hhhhcc
Q 001172 30 LAEWRS 35 (1133)
Q Consensus 30 l~~~~~ 35 (1133)
++.|.|
T Consensus 575 ~~~~~~ 580 (2084)
T PTZ00121 575 ISHWNS 580 (2084)
T ss_pred cccccc
Confidence 445554
No 28
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.81 E-value=0.1 Score=67.69 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=3.3
Q ss_pred CCchhhh
Q 001172 976 FPHLDII 982 (1133)
Q Consensus 976 FPHLDII 982 (1133)
.||..-|
T Consensus 868 ~~~~~~~ 874 (1021)
T PTZ00266 868 LPHMNAI 874 (1021)
T ss_pred ccccchh
Confidence 4555444
No 29
>PTZ00121 MAEBL; Provisional
Probab=95.57 E-value=0.077 Score=69.07 Aligned_cols=8 Identities=0% Similarity=-0.106 Sum_probs=3.3
Q ss_pred hhhhhhhc
Q 001172 272 KVVVKHFF 279 (1133)
Q Consensus 272 kV~~k~Ff 279 (1133)
.+.|+.|+
T Consensus 986 ~~~GkCyi 993 (2084)
T PTZ00121 986 IANGECYH 993 (2084)
T ss_pred hhcCeeEE
Confidence 33444443
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.17 E-value=0.087 Score=65.02 Aligned_cols=32 Identities=34% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001172 419 LIREEEAAWLAESEQKAKRGAAEKEKKAKKKL 450 (1133)
Q Consensus 419 Ll~E~E~e~~~~~e~~~kk~~k~kekk~~~k~ 450 (1133)
-|+|+-|.||+.+|-++|++.++.|||+.+.+
T Consensus 928 k~qE~~E~ER~rrEaeek~rre~ee~k~~k~e 959 (1259)
T KOG0163|consen 928 KIQELAEAERKRREAEEKRRREEEEKKRAKAE 959 (1259)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 35566666677777777777666666555444
No 31
>PHA02790 Kelch-like protein; Provisional
Probab=94.63 E-value=0.01 Score=70.66 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=87.0
Q ss_pred hccccchhhhhhhhhhhcchhhh---hhhHHHHHHhhccccc---------ccccccccccccccccCCCCCCceEeecc
Q 001172 262 MSREKTDAILKVVVKHFFIEKEV---TSTLVMDSLYSGLKAL---------EGQSKSKKTKAKLLDAEDTPPPIVHVEND 329 (1133)
Q Consensus 262 m~~e~sDVilkV~~k~Ff~~keV---tSplvmd~L~~glk~l---------e~~t~~~k~~~~~~~t~e~p~~~~~v~~d 329 (1133)
|-++..||++ +.|+.|.+||.| -||+|.+=+.++|+.= +......+.++.++||.++. +..+
T Consensus 18 ~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~-----it~~ 91 (480)
T PHA02790 18 MTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY-----IDSH 91 (480)
T ss_pred hhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEE-----Eecc
Confidence 3344466665 556699999988 5577765444567411 11111255567788987753 2222
Q ss_pred eeeehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHH
Q 001172 330 MFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIE 404 (1133)
Q Consensus 330 ~~~l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~rv~ 404 (1133)
=++|||.++....++.+.. .|.+.+.+. ++.++-- -+.|.|.+|.+++.+|.. ++|. +
T Consensus 92 ---nV~~ll~aA~~Lqi~~v~~---~C~~fL~~~------l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF~---~ 154 (480)
T PHA02790 92 ---NVVNLLRASILTSVEFIIY---TCINFILRD------FRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHFL---E 154 (480)
T ss_pred ---cHHHHHHHHHHhChHHHHH---HHHHHHHhh------CCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhHH---H
Confidence 2789999999999988765 588888887 6666622 289999999999887765 6664 2
Q ss_pred HHHH--HHHHHHHHHHHH
Q 001172 405 VAYQ--EAVALKRQEELI 420 (1133)
Q Consensus 405 ~Ay~--E~~A~~rQ~~Ll 420 (1133)
++-+ |.+..+-..+||
T Consensus 155 v~~~~~~ef~~L~~~~lL 172 (480)
T PHA02790 155 LEDDIIDNFDYLSMKLIL 172 (480)
T ss_pred HhcccchhhhhCCHHHhc
Confidence 2222 445444344555
No 32
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=94.15 E-value=0.19 Score=65.32 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=7.4
Q ss_pred ccCCcccccCCchh
Q 001172 967 QTQGVLVDEFPHLD 980 (1133)
Q Consensus 967 Q~qg~v~dEFPHLD 980 (1133)
|.-|-+.--|-||.
T Consensus 893 ~~~~~~~~~~~~~~ 906 (1021)
T PTZ00266 893 KKGGEVDRSYKHLE 906 (1021)
T ss_pred ccCcccchhhhhhh
Confidence 34445555566654
No 33
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=94.00 E-value=0.32 Score=57.90 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=5.6
Q ss_pred eecceeeehhhH
Q 001172 326 VENDMFVLVDDV 337 (1133)
Q Consensus 326 v~~d~~~l~~Dl 337 (1133)
+.++.|++.+-+
T Consensus 256 v~snlwtl~Qq~ 267 (429)
T PRK00247 256 VANNLWTLIQNI 267 (429)
T ss_pred HHhhHHHHHHHH
Confidence 445555544433
No 34
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=93.21 E-value=0.64 Score=56.29 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=7.5
Q ss_pred hhhHHHHHHhhcccc
Q 001172 285 TSTLVMDSLYSGLKA 299 (1133)
Q Consensus 285 tSplvmd~L~~glk~ 299 (1133)
.++++|+.+-..++.
T Consensus 65 ~~~~~e~e~~~~~~~ 79 (591)
T KOG2412|consen 65 VMHVSEDEMESDEGE 79 (591)
T ss_pred cchhHHHHHHhcccc
Confidence 345555555444433
No 35
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=0.37 Score=59.98 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 001172 834 GYIPQSYRN 842 (1133)
Q Consensus 834 sy~pqsYrN 842 (1133)
.+.|-||=.
T Consensus 857 GwFPksYVk 865 (1118)
T KOG1029|consen 857 GWFPKSYVK 865 (1118)
T ss_pred CcCcHHhhh
Confidence 477888865
No 36
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=92.40 E-value=0.85 Score=55.28 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=11.7
Q ss_pred hhHHHhhHHHHHhhhcc
Q 001172 227 VEERRGKLGRLIEDKAR 243 (1133)
Q Consensus 227 ved~~~hLG~LLqS~~~ 243 (1133)
|..+++=|..-|...++
T Consensus 81 I~nlrrIiagyl~~ayg 97 (489)
T PF05262_consen 81 INNLRRIIAGYLEAAYG 97 (489)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45566677777777765
No 37
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=92.37 E-value=0.15 Score=59.69 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=58.9
Q ss_pred cchhhhhhhhhhhcchhh---hhhhHHHHHHhhcccc-------cccc-cccccccccccccCCCCCCceEeecceeeeh
Q 001172 266 KTDAILKVVVKHFFIEKE---VTSTLVMDSLYSGLKA-------LEGQ-SKSKKTKAKLLDAEDTPPPIVHVENDMFVLV 334 (1133)
Q Consensus 266 ~sDVilkV~~k~Ff~~ke---VtSplvmd~L~~glk~-------le~~-t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~ 334 (1133)
-+||.|.|..++|.+|+. +||.+|-+-||+||+. |+.. .-.|+++++.|||..+--.. ++-| ..
T Consensus 44 y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~--~~ed---~l 118 (620)
T KOG4350|consen 44 YSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAG--VEED---IL 118 (620)
T ss_pred ccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceeccc--chHH---HH
Confidence 399999999999999994 4999999999999974 2222 33589999999987653111 2222 23
Q ss_pred hhHHHHHHHhhcCCC
Q 001172 335 DDVLLLLERAALEPL 349 (1133)
Q Consensus 335 ~Dll~~leR~al~~L 349 (1133)
=|+|.|+.||++.-|
T Consensus 119 ld~LslAh~Ygf~~L 133 (620)
T KOG4350|consen 119 LDYLSLAHRYGFIQL 133 (620)
T ss_pred HHHHHHHHhcCcHHH
Confidence 478889999987765
No 38
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=92.36 E-value=0.55 Score=56.81 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=6.5
Q ss_pred EEEEEEEeCCC
Q 001172 133 QFTIAVVNRDP 143 (1133)
Q Consensus 133 qFtf~LLNQdG 143 (1133)
.-++.++|-.|
T Consensus 8 ~~~i~F~Ny~g 18 (489)
T PF05262_consen 8 NMTIEFINYSG 18 (489)
T ss_pred cCceEEEecCC
Confidence 34566677654
No 39
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.27 E-value=1.6 Score=54.65 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=5.7
Q ss_pred hHHHHHhhhc
Q 001172 233 KLGRLIEDKA 242 (1133)
Q Consensus 233 hLG~LLqS~~ 242 (1133)
+|+.||+...
T Consensus 649 QL~~LldKL~ 658 (1259)
T KOG0163|consen 649 QLSELLDKLE 658 (1259)
T ss_pred HHHHHHHHHH
Confidence 5666665443
No 40
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.26 E-value=0.19 Score=59.93 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=14.2
Q ss_pred hHHHHHHHhhcCCCCC
Q 001172 336 DVLLLLERAALEPLPP 351 (1133)
Q Consensus 336 Dll~~leR~al~~Lp~ 351 (1133)
|+-.++.-|+|-+||-
T Consensus 436 d~~~lA~~YgLl~lP~ 451 (567)
T KOG0345|consen 436 DLGKLATLYGLLRLPK 451 (567)
T ss_pred cHHHHHHHHHHHhCCC
Confidence 7778999999999996
No 41
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=1.8 Score=54.76 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=10.9
Q ss_pred HHhhhHHHHHHHhhhhhHHHHH
Q 001172 384 ELGRRTVEIFVLAHIFSNKIEV 405 (1133)
Q Consensus 384 Elgrr~~~ifa~~k~F~~rv~~ 405 (1133)
..+.++-+|.--...|+++|+.
T Consensus 743 k~k~~l~rm~~d~~~f~e~vk~ 764 (988)
T KOG2072|consen 743 KDKKRLSRMYDDRDKFKEHVKG 764 (988)
T ss_pred HHHHHHHHHhhhHHHHHHHHhh
Confidence 3455555555545555544443
No 42
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.25 E-value=0.061 Score=65.87 Aligned_cols=137 Identities=17% Similarity=0.129 Sum_probs=84.9
Q ss_pred cccchhhhhhhhhhhcchhhh---hhhHHHHHHhhc-cccccccccc--------ccccccccccCCCCCCceEeeccee
Q 001172 264 REKTDAILKVVVKHFFIEKEV---TSTLVMDSLYSG-LKALEGQSKS--------KKTKAKLLDAEDTPPPIVHVENDMF 331 (1133)
Q Consensus 264 ~e~sDVilkV~~k~Ff~~keV---tSplvmd~L~~g-lk~le~~t~~--------~k~~~~~~~t~e~p~~~~~v~~d~~ 331 (1133)
++..||+|.|.++.|.+||.| .||+|. ++|.+ |+.-....-. ...++.++||..+. +..+
T Consensus 34 ~~lcDv~L~v~~~~~~aHR~VLAa~S~YFr-aMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~-----i~~~-- 105 (571)
T KOG4441|consen 34 GLLCDVTLLVGDREFPAHRVVLAACSPYFR-AMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLE-----ISED-- 105 (571)
T ss_pred CCCceEEEEECCeeechHHHHHHhccHHHH-HHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEE-----echH--
Confidence 446999999999999999977 567654 46663 3221111001 22234566665532 1111
Q ss_pred eehhhHHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHhhhhhHHHHHH
Q 001172 332 VLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIEVA 406 (1133)
Q Consensus 332 ~l~~Dll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~rv~~A 406 (1133)
=+++||.++..+.+..+-. .|..-+.+. +..++.. .|.+.|.||... .+.|+ -++|. ++.
T Consensus 106 -nVq~ll~aA~~lQi~~v~~---~C~~fL~~~------l~~~Nclgi~~~a~~~~~~~L~~~-a~~~i-~~~F~---~v~ 170 (571)
T KOG4441|consen 106 -NVQELLEAASLLQIPEVVD---ACCEFLESQ------LDPSNCLGIRRFAELHSCTELLEV-ADEYI-LQHFA---EVS 170 (571)
T ss_pred -hHHHHHHHHHHhhhHHHHH---HHHHHHHhc------CCHHHHHHHHHHHHhcCcHHHHHH-HHHHH-HHHHH---HHh
Confidence 2578888888877766543 576666665 4444432 278888877644 44455 45675 778
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001172 407 YQEAVALKRQEELIREE 423 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~ 423 (1133)
-+|.+-++-+++|+.=+
T Consensus 171 ~~eefl~L~~~~l~~ll 187 (571)
T KOG4441|consen 171 KTEEFLLLSLEELIGLL 187 (571)
T ss_pred ccHHhhCCCHHHHHhhc
Confidence 88888888888887644
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.08 E-value=1.5 Score=56.27 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=10.0
Q ss_pred HhhHHhhhHHHHHHH
Q 001172 381 RLTELGRRTVEIFVL 395 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa~ 395 (1133)
...|+++|.|+-+..
T Consensus 783 ~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 783 KELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHHHHh
Confidence 335778888886654
No 44
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.05 E-value=2.3 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhhhHHHHH-Hhhhhhhh
Q 001172 449 KLAKQKRNNRKGKEKKREE-RSSMALSD 475 (1133)
Q Consensus 449 k~ak~~e~~rk~~e~~~ee-~~~~~~~~ 475 (1133)
.+|+|+++++|++||...| ...+..+|
T Consensus 387 ieareerrkqkeeeklk~e~qkikelee 414 (445)
T KOG2891|consen 387 IEAREERRKQKEEEKLKAEEQKIKELEE 414 (445)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3477777777877776544 44444444
No 45
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=90.45 E-value=2.7 Score=53.32 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001172 406 AYQEAVALKRQEELIREEEA-AWLAESEQ 433 (1133)
Q Consensus 406 Ay~E~~A~~rQ~~Ll~E~E~-e~~~~~e~ 433 (1133)
.|.|.+--.||..+-+-+-+ +++++.||
T Consensus 757 ~f~e~vk~~rqs~~~e~~~~~ea~leaer 785 (988)
T KOG2072|consen 757 KFKEHVKGERQSEYEEKLKQFEARLEAER 785 (988)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 37777777788777665533 44556555
No 46
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=1.2 Score=49.68 Aligned_cols=38 Identities=29% Similarity=0.191 Sum_probs=19.8
Q ss_pred CCCCcCCCCcccCCCCccCCCCcCCCCccCCCcccccccccccC
Q 001172 531 SPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDD 574 (1133)
Q Consensus 531 s~v~w~~d~~e~~~~~~~~~~~~~~~~~~~n~~~~k~~~s~~~~ 574 (1133)
--|+-+.=||+++=-|..+.| -+||=+++.--+.+|||
T Consensus 213 KvV~ledLas~f~Lrtqd~in------riq~~l~eg~ltGVmDD 250 (299)
T KOG3054|consen 213 KVVPLEDLASEFGLRTQDSIN------RIQELLAEGLLTGVMDD 250 (299)
T ss_pred CeeeHHHHHHHhCccHHHHHH------HHHHHHHhhhheeeecC
Confidence 345555556666665554443 23444444444566666
No 47
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=89.70 E-value=1.4 Score=52.77 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=6.7
Q ss_pred hhhHHHHHHhhccccc
Q 001172 285 TSTLVMDSLYSGLKAL 300 (1133)
Q Consensus 285 tSplvmd~L~~glk~l 300 (1133)
..|+|+. ||..+..+
T Consensus 112 QiPIfig-Ly~vir~m 126 (429)
T PRK00247 112 QIPVFLG-LYQVLLRM 126 (429)
T ss_pred HHHHHHH-HHHHHHhc
Confidence 3454443 45444443
No 48
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.64 E-value=3.3 Score=42.80 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 410 AVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
++...|++++...+++.++.++|-++.+.+
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e 78 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQ 78 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888777766555554
No 49
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=89.43 E-value=0.23 Score=58.34 Aligned_cols=77 Identities=27% Similarity=0.444 Sum_probs=62.9
Q ss_pred ccccEEEEEEccccccC-------CCeeeCCceee--cCeEEEEEEEeCCCC--CCCeEEEEEEEecCCCC-CCCCeEEE
Q 001172 65 ELYGKYTWRIEKFSQIS-------KRELRSNAFEV--GGYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFA 132 (1133)
Q Consensus 65 ~~tGshtwkIdNFS~LK-------ge~I~Sp~FsV--GGhkWRI~~YPnG~~--~~dyLSLYLeL~s~~sl-~p~WsV~A 132 (1133)
...|+..|+|.+|...+ ...+.|+.|+. .||+-+.++|-+|+. .+-++|+|+.+..+..+ ...|.++-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 45799999999996544 24688999986 799999999988865 36799999999887654 34699999
Q ss_pred EEEEEEEeC
Q 001172 133 QFTIAVVNR 141 (1133)
Q Consensus 133 qFtf~LLNQ 141 (1133)
..+|.|+++
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999999
No 50
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=89.35 E-value=3 Score=46.13 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=27.6
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001172 387 RRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 387 rr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
-.+|.|++|--++. ++.---=-++...|++++...+++.++.++|-++.+
T Consensus 10 ~qiInFlil~~lL~-kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 59 (246)
T TIGR03321 10 AQLINFLILVWLLK-RFLYRPILDAMDAREKKIAGELADADTKKREAEQER 59 (246)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666544443 222222234556778888888877776665544333
No 51
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=89.11 E-value=2.5 Score=50.79 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=28.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001172 388 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 388 r~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
.+|.|+++--++. ++..----++..+||+++..++++.+..+++-++.+
T Consensus 7 qlInFlIl~~lL~-kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~ 55 (445)
T PRK13428 7 QLIGFAVIVFLVW-RFVVPPVRRLMAARQDTVRQQLAESATAADRLAEAD 55 (445)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444443 222222345567889999999988876655544433
No 52
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=88.95 E-value=1.5 Score=50.45 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=5.9
Q ss_pred CCEEEEEE
Q 001172 180 GDTLIIKA 187 (1133)
Q Consensus 180 DDsLTIeC 187 (1133)
.|.++|.+
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 67777777
No 53
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=88.67 E-value=0.048 Score=50.82 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=22.9
Q ss_pred ccchhhhhhh-hhhhcchhhh---hhhHHHHHHhhc
Q 001172 265 EKTDAILKVV-VKHFFIEKEV---TSTLVMDSLYSG 296 (1133)
Q Consensus 265 e~sDVilkV~-~k~Ff~~keV---tSplvmd~L~~g 296 (1133)
+.+|+++++. +++|++||.+ +||+|.+-+...
T Consensus 9 ~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~ 44 (111)
T PF00651_consen 9 EFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGS 44 (111)
T ss_dssp TS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT
T ss_pred CCCCEEEEECCCEEEeechhhhhccchhhhhccccc
Confidence 4699999999 8999999977 778776655444
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.36 E-value=7.1 Score=50.57 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=4.8
Q ss_pred eeecCCchH
Q 001172 212 VRVYLTNVE 220 (1133)
Q Consensus 212 I~VPpSNLg 220 (1133)
+.+-|+|+.
T Consensus 639 L~~dpkN~y 647 (1018)
T KOG2002|consen 639 LRNDPKNMY 647 (1018)
T ss_pred HhcCcchhh
Confidence 445566653
No 55
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=88.35 E-value=1 Score=51.65 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=6.8
Q ss_pred HHhhHHhhhHHHHHH
Q 001172 380 RRLTELGRRTVEIFV 394 (1133)
Q Consensus 380 ~~~~Elgrr~~~ifa 394 (1133)
..+..+.-.+++.++
T Consensus 234 ~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 234 EPLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344444444444444
No 56
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=87.67 E-value=4 Score=45.59 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=24.7
Q ss_pred hhHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 387 RRTVEIFVLAHIFSNKIEVAYQ--EAVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 387 rr~~~ifa~~k~F~~rv~~Ay~--E~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
-.+|.|++|--+++ +..|+ =++-.+|++++..++++++..++|-
T Consensus 10 ~qiInFlILv~lL~---~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA 55 (250)
T PRK14474 10 AQIINFLILVYLLR---RFLYKPIIQVMKKRQQRIANRWQDAEQRQQEA 55 (250)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544443 22322 2345677888888887766655443
No 57
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=87.52 E-value=5.3 Score=41.94 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=31.4
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
.-..+|.|++|--++. ++.---=-++-..|++++...+++.+...++-++.+.+
T Consensus 21 ~~~~~i~Flil~~lL~-~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e 74 (175)
T PRK14472 21 IFWTAVTFVIVLLILK-KIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRK 74 (175)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666544443 22222234455778888888888877766654444433
No 58
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=87.50 E-value=5.4 Score=41.32 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 410 AVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
++-.+|+..+-.++++.+..+++-++.+.
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 63 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQA 63 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888877766665544443
No 59
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=87.26 E-value=5.6 Score=41.84 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=28.4
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 386 GRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
...+|.|++|--++. ++.---=-++-..|++.+..++++.+....+-++.+.
T Consensus 22 ~~~iInFliL~~lL~-~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 73 (173)
T PRK13453 22 IVTVLTFIVLLALLK-KFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEE 73 (173)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444442 2222222344567888888888887776555444443
No 60
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=87.26 E-value=4.7 Score=43.84 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 384 ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 384 Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
.+-.-+|.|++|--++. |+..=-=-++..+||+++...+++.++.+.|-++.+.+
T Consensus 55 ~l~w~~I~FliL~~lL~-k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ 109 (204)
T PRK09174 55 QLLWLAITFGLFYLFMS-RVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAA 109 (204)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666544443 32222234566889999999998888877765555544
No 61
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=87.08 E-value=5.6 Score=43.19 Aligned_cols=51 Identities=12% Similarity=-0.050 Sum_probs=30.1
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAK 436 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~k 436 (1133)
+--.+|.|+++--+|. ++.-----++...|++.+..++++.+...+|-++.
T Consensus 51 ~i~qlInFlIlv~lL~-k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~ 101 (205)
T PRK06231 51 FIAHLIAFSILLLLGI-FLFWKPTQRFLNKRKELIEAEINQANELKQQAQQL 101 (205)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655554 22222234556778888888887776665554333
No 62
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=86.97 E-value=5 Score=42.61 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=28.6
Q ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 384 ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 384 Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
.+-.-+|-||+|--++. |+..-==-++..+|+.++-..+++.+..+.+-+..+.
T Consensus 33 q~~~~lI~F~iL~~ll~-k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 86 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLT-RVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEK 86 (181)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445666666444443 2222222455677788887777776666554443333
No 63
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=86.68 E-value=5.8 Score=41.64 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=31.3
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 385 LGRRTVEIFVLAHIFSNKIEVAYQ--EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~rv~~Ay~--E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
+-..+|.|+++--++. +.+|+ -++-.+|++++..++++.+....+-+..+.+
T Consensus 25 ~~~~~inflil~~lL~---~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e 78 (167)
T PRK08475 25 IIERTINFLIFVGILW---YFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKED 78 (167)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677777655554 23332 3456788888888888777665554444433
No 64
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=86.32 E-value=7 Score=41.00 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=29.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001172 388 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 388 r~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
.+|.|+++--+|. ++.--.=-++...||+++...+++.+..+++-++..
T Consensus 25 ~iinflIl~~lL~-~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~ 73 (174)
T PRK07352 25 NLINLAIVIGLLY-YFGRGFLGKILEERREAILQALKEAEERLRQAAQAL 73 (174)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555544443 222223356678889999998888776655544333
No 65
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=86.22 E-value=2.6 Score=50.15 Aligned_cols=12 Identities=8% Similarity=0.111 Sum_probs=8.5
Q ss_pred hHHhhhHHHHHH
Q 001172 383 TELGRRTVEIFV 394 (1133)
Q Consensus 383 ~Elgrr~~~ifa 394 (1133)
+|+-..+||+++
T Consensus 101 pE~TNelLQ~~g 112 (583)
T KOG3809|consen 101 PEETNELLQMLG 112 (583)
T ss_pred HHHHHHHHHHHH
Confidence 566777777776
No 66
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=85.77 E-value=5.4 Score=42.21 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 389 TVEIFVLAHIFSNKIEVAYQ---EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 389 ~~~ifa~~k~F~~rv~~Ay~---E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
+|.|+++.-++. ..+|. -++-..||+++..++++.++.++|-+++..+
T Consensus 33 ~inflil~~iL~---~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e 83 (184)
T PRK13455 33 TLAFLLFIGILV---YFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLAS 83 (184)
T ss_pred HHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666555553 22321 4567889999999998887776665544443
No 67
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=85.61 E-value=8.7 Score=38.56 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 409 EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-++-..|+.++...+++.+....+-++...+
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~ 61 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQ 61 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888887777666655444443
No 68
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=85.11 E-value=9.6 Score=40.01 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=28.9
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
....+|.|++|--++. ++..--=-++-..|++++..++++.+....|-++.+.
T Consensus 19 ~~~~~i~Flil~~iL~-~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 71 (173)
T PRK13460 19 VVWTLVTFLVVVLVLK-KFAWDVILKALDERASGVQNDINKASELRLEAEALLK 71 (173)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666555444442 2222222445567888888888777766555444333
No 69
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=84.78 E-value=8.4 Score=40.29 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 409 EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-++-..|++++..+++++++.++|-++.+.+
T Consensus 36 ~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~ 66 (167)
T PRK14475 36 AGALDAYAAKIQAELDEAQRLREEAQALLAD 66 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999988887776555544
No 70
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=84.77 E-value=14 Score=39.03 Aligned_cols=58 Identities=16% Similarity=-0.024 Sum_probs=37.9
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001172 385 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKE 443 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~ke 443 (1133)
+=.-+|.|++|--+|+ |+..=-=.++...||.++-..++++++.+.|-++.+++-+++
T Consensus 13 ifw~iI~FlILy~ll~-kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~ 70 (155)
T PRK06569 13 IFWLIVTFGLLYIFVY-KFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEE 70 (155)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566665444443 333333466778899999999999988888776666653433
No 71
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=84.61 E-value=8.9 Score=40.65 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=28.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 388 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 388 r~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
.+|.|++|--++. ++.--.=-++-.+||..+...+++.++.+.+-+.+..
T Consensus 30 ~~Inflill~lL~-~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 79 (184)
T CHL00019 30 NLINLSVVLGVLI-YFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLE 79 (184)
T ss_pred HHHHHHHHHHHHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556555444443 2222223445577888888888877766555444333
No 72
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=84.35 E-value=11 Score=43.41 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=31.5
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001172 386 GRRTVEIFVLAHIFSNKIEVAYQEA--VALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~rv~~Ay~E~--~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
=.=+|++.| .|.++|-++..+.|- -++.+|.+..+++..+++.+-+|
T Consensus 130 V~PiLeVLV-gKtlEQAl~EV~EEeEL~~lr~~q~~fe~~R~aEl~e~qr 178 (291)
T PF06098_consen 130 VKPILEVLV-GKTLEQALMEVMEEEELAALRRQQRAFEELRNAELAEVQR 178 (291)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336778888 888887777776654 35566666777776666666554
No 73
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=84.06 E-value=9.4 Score=39.59 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 410 AVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
++-..|+.++...+++.+....+-++.+.
T Consensus 35 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~ 63 (164)
T PRK14473 35 NLLNERTRRIEESLRDAEKVREQLANAKR 63 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888877766655444433
No 74
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=4 Score=45.63 Aligned_cols=14 Identities=29% Similarity=0.174 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 001172 416 QEELIREEEAAWLA 429 (1133)
Q Consensus 416 Q~~Ll~E~E~e~~~ 429 (1133)
+.++.+|-|+.+|.
T Consensus 116 err~qRe~E~~eRE 129 (299)
T KOG3054|consen 116 ERRAQREAEEAERE 129 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544443
No 75
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=83.09 E-value=6.8 Score=46.57 Aligned_cols=9 Identities=33% Similarity=0.542 Sum_probs=4.1
Q ss_pred cccCCCCCC
Q 001172 507 VSDVSDSVD 515 (1133)
Q Consensus 507 ~sd~sd~~d 515 (1133)
+.|+-..++
T Consensus 259 ~dd~~~gl~ 267 (387)
T PRK09510 259 VDDLFGGLD 267 (387)
T ss_pred HHHHhhccc
Confidence 444444444
No 76
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.57 E-value=5.3 Score=45.32 Aligned_cols=19 Identities=32% Similarity=0.700 Sum_probs=9.6
Q ss_pred ecccCCCCcccccceeccccc
Q 001172 154 RFWKKEHDWGWKKFMELSKVS 174 (1133)
Q Consensus 154 ~FsskesdWGfskFIkrsdLE 174 (1133)
-|.. .++|- .-||...++.
T Consensus 123 dfps-rhdwd-d~fm~~kdmd 141 (445)
T KOG2891|consen 123 DFPS-RHDWD-DFFMDAKDMD 141 (445)
T ss_pred CCCc-ccchH-HHHhhhhhhh
Confidence 3443 36663 2366666554
No 77
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=82.51 E-value=14 Score=37.92 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 409 EAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
-++...|+++.-..+++.++.+.+-++.+.
T Consensus 33 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 62 (141)
T PRK08476 33 LKFMDNRNASIKNDLEKVKTNSSDVSEIEH 62 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777776666555444433
No 78
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=82.23 E-value=4.6 Score=46.56 Aligned_cols=11 Identities=18% Similarity=0.278 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 001172 417 EELIREEEAAW 427 (1133)
Q Consensus 417 ~~Ll~E~E~e~ 427 (1133)
++.|++||.+.
T Consensus 100 qErlkQle~er 110 (387)
T COG3064 100 QERLKQLEKER 110 (387)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 79
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=82.15 E-value=12 Score=40.85 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 379 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESE 432 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e 432 (1133)
+..|-+--+||++..+ -|..++.+.|.|||+|+|+-.+
T Consensus 90 ~~~qk~~q~Rm~~qL~----------------~aE~rhrr~i~eLe~EKrkh~~ 127 (192)
T PF09727_consen 90 MEHQKKMQRRMLEQLA----------------AAEKRHRRTIQELEEEKRKHAE 127 (192)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666655 2678899999999999887553
No 80
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=82.08 E-value=14 Score=38.14 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=25.0
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 386 GRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
...+|.|++|--++. ++.---=-++-..|+..+...+++.+....+-
T Consensus 9 ~~~~inF~il~~iL~-~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA 55 (159)
T PRK13461 9 IATIINFIILLLILK-HFFFDKIKAVIDSRQSEIDNKIEKADEDQKKA 55 (159)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655544443 22211123445677788777777766554443
No 81
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=81.93 E-value=12 Score=39.26 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=28.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 388 RTVEIFVLAHIFSNKIEVAYQ--EAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 388 r~~~ifa~~k~F~~rv~~Ay~--E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-+|-|++|--+|. +.+|+ -++-.+|+++.-.+++++++.++|-+.-+..
T Consensus 10 q~I~FlIll~ll~---kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e 60 (154)
T PRK06568 10 LAVSFVIFVYLIY---RPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQ 60 (154)
T ss_pred HHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444554 33333 2344667888888888888777765544443
No 82
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.70 E-value=11 Score=44.85 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=15.0
Q ss_pred ccceecccccc----CCc-cCCEEEEEEEEE
Q 001172 165 KKFMELSKVSD----GFK-DGDTLIIKAQVQ 190 (1133)
Q Consensus 165 skFIkrsdLEs----GFL-vDDsLTIeCdVt 190 (1133)
.++++|.+|.+ -++ ..|.++|++.+.
T Consensus 189 L~l~~RqDl~S~v~~~v~P~~D~vt~ev~l~ 219 (440)
T KOG2357|consen 189 LKLVKRQDLLSRVMNSVRPVGDQVTFEVTLN 219 (440)
T ss_pred hhhhhhccHHHHHHHhcccccceEEEEEecC
Confidence 35666766662 222 357777776653
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.86 E-value=67 Score=40.07 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=35.0
Q ss_pred hhhhhhHHHHHHhhhhhhhhhcccCCchhhhhhhhcccCCCCCCCCCccc---cccCCCCCCCCccc
Q 001172 457 NRKGKEKKREERSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLED---VSDVSDSVDGGAEV 520 (1133)
Q Consensus 457 ~rk~~e~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~d~~e~---~sd~sd~~d~~~e~ 520 (1133)
..||||+..+|+..-...-+++|..-.+- -+.+-++|--+.+-...... .+|+|||-|.+-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~~Le~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~de~p~~ 494 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIERLEQRLDKV-ADEKWKEAAALTEDATAASPPSCPADLSDSEDESPED 494 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccccccCccccccCCCCCcCCCCcccCCccc
Confidence 34677777777777666666666332222 23333344444443333322 27888888887774
No 84
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=79.85 E-value=6.6 Score=45.34 Aligned_cols=12 Identities=33% Similarity=0.260 Sum_probs=5.2
Q ss_pred HHHHHHhhhhhh
Q 001172 463 KKREERSSMALS 474 (1133)
Q Consensus 463 ~~~ee~~~~~~~ 474 (1133)
++++|+..++++
T Consensus 178 kA~eeAkaKAe~ 189 (387)
T COG3064 178 KAAEEAKAKAEA 189 (387)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 85
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=79.71 E-value=19 Score=36.48 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=19.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 393 FVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 393 fa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
|+|-+.|...|.. +-..|+.....++++.+....+-
T Consensus 10 ~il~~~~~~pi~~-----~l~~R~~~I~~~l~~A~~~~~ea 45 (147)
T TIGR01144 10 WFCMKYVWPPLAK-----AIETRQKKIADGLASAERAKKEA 45 (147)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 34567777777777766554443
No 86
>COG4499 Predicted membrane protein [Function unknown]
Probab=79.66 E-value=3.4 Score=48.72 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=12.2
Q ss_pred CCceeecC-----eEEEEEEEeCC
Q 001172 87 SNAFEVGG-----YKWYILIYPQG 105 (1133)
Q Consensus 87 Sp~FsVGG-----hkWRI~~YPnG 105 (1133)
+++|.+.. -.|.|.|-|..
T Consensus 48 ~~~f~~~eit~~~Ds~vIsy~i~~ 71 (434)
T COG4499 48 SPPFIVAEITEDNDSFVISYPIPE 71 (434)
T ss_pred CCCccceeecccCceeEEEecCcc
Confidence 66666543 46888877654
No 87
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.65 E-value=21 Score=43.07 Aligned_cols=18 Identities=33% Similarity=0.288 Sum_probs=10.6
Q ss_pred hhhHHHHHHhhccccccc
Q 001172 285 TSTLVMDSLYSGLKALEG 302 (1133)
Q Consensus 285 tSplvmd~L~~glk~le~ 302 (1133)
-+.++|..||+--|+...
T Consensus 10 i~a~~~S~~~~~nka~ad 27 (630)
T KOG0742|consen 10 ISALAMSWLFGINKAYAD 27 (630)
T ss_pred HHHHHHHHHhccchhhcc
Confidence 456666666666664433
No 88
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=77.95 E-value=23 Score=36.14 Aligned_cols=24 Identities=25% Similarity=0.125 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 410 AVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
++-..|+.++...+++.+....+-
T Consensus 31 ~~l~~R~~~I~~~l~~a~~~~~~a 54 (156)
T PRK05759 31 KALEERQKKIADGLAAAERAKKEL 54 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777776665554443
No 89
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=77.77 E-value=0.46 Score=41.30 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=46.9
Q ss_pred hhhhhhhhhhhcchhhh---hhhHHHHHHhhccc-----c--ccc-ccccccccccccccCCCCCCceEeecceeeehhh
Q 001172 268 DAILKVVVKHFFIEKEV---TSTLVMDSLYSGLK-----A--LEG-QSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDD 336 (1133)
Q Consensus 268 DVilkV~~k~Ff~~keV---tSplvmd~L~~glk-----~--le~-~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~D 336 (1133)
||++.+.++.|.+||.+ .|+.|..-+..+.. . +.. ....++..++++|++....+.. .+.+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~--------~~~~ 72 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE--------NVEE 72 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH--------HHHH
Confidence 67889999999999987 44655444333221 1 111 1123666778888876432221 4568
Q ss_pred HHHHHHHhhcCCCC
Q 001172 337 VLLLLERAALEPLP 350 (1133)
Q Consensus 337 ll~~leR~al~~Lp 350 (1133)
|+.+++.+.++.|-
T Consensus 73 l~~~a~~~~~~~l~ 86 (90)
T smart00225 73 LLELADYLQIPGLV 86 (90)
T ss_pred HHHHHHHHCcHHHH
Confidence 88888888877663
No 90
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=77.56 E-value=3.5 Score=48.04 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=5.2
Q ss_pred hHHHHHhhhc
Q 001172 233 KLGRLIEDKA 242 (1133)
Q Consensus 233 hLG~LLqS~~ 242 (1133)
-+-.|++.+.
T Consensus 207 ~vkkl~k~~~ 216 (405)
T KOG2963|consen 207 NVKKLVKAKK 216 (405)
T ss_pred HHHHHHhhhc
Confidence 4555555443
No 91
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=77.53 E-value=20 Score=39.05 Aligned_cols=17 Identities=47% Similarity=0.468 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001172 440 AEKEKKAKKKLAKQKRN 456 (1133)
Q Consensus 440 k~kekk~~~k~ak~~e~ 456 (1133)
||||.|+++|+||++++
T Consensus 198 kEkeekK~~KeaKrk~k 214 (225)
T KOG4848|consen 198 KEKEEKKAVKEAKRKEK 214 (225)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555554443
No 92
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=77.14 E-value=11 Score=44.14 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=11.7
Q ss_pred CCCcccCCCccceeeec
Q 001172 575 SSSTCSTDSVPSVVMYG 591 (1133)
Q Consensus 575 ~sstcs~ds~~~~~~~g 591 (1133)
-|--|-|+|.|---..|
T Consensus 316 msvfcqtesfpaerthg 332 (561)
T KOG1103|consen 316 MSVFCQTESFPAERTHG 332 (561)
T ss_pred hhhhhhcccCchhhccc
Confidence 36679999988554444
No 93
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.26 E-value=43 Score=36.13 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=28.6
Q ss_pred HHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 379 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEE 424 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E 424 (1133)
.-.|+|-|.=++.|+---.+.-.++..-|...++.-.++.|..|..
T Consensus 76 Ti~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~ 121 (189)
T PF10211_consen 76 TIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQG 121 (189)
T ss_pred HhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888866666655333333456666777777766776666543
No 94
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=75.46 E-value=22 Score=43.06 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001172 404 EVAYQEAVALKRQEEL 419 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~L 419 (1133)
++|..-+-++++|-++
T Consensus 513 kva~dnar~qekQiq~ 528 (641)
T KOG3915|consen 513 KVAIDNARAQEKQIQL 528 (641)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 95
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=75.41 E-value=0.96 Score=52.42 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=31.0
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001172 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 213 ~VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
+||+.|+|.|| ||++|||.......||.+++..+
T Consensus 1 PvGL~NlGNTC---------YmNSlLQ~L~~i~~lR~~i~~~~ 34 (343)
T cd02666 1 PAGLDNIGNTC---------YLNSLLQYFFTIKPLRDLVLNFD 34 (343)
T ss_pred CCCcccCCcee---------HHHHHHHHHHccHHHHHHHHcCC
Confidence 48999999999 99999999999999999888765
No 96
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=75.06 E-value=2.3 Score=52.95 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhh
Q 001172 401 NKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA---AEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRL 477 (1133)
Q Consensus 401 ~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~---k~kekk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~ 477 (1133)
.-+++|-+|--|+.-+.+=+.|+|+.-..++++++-+.. +|++.+.++.+.+++++.|++.++..+...+.+.+.++
T Consensus 673 ~~feAaSKELAaL~~RA~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 752 (1136)
T KOG4786|consen 673 YFFEAASKELAALKERAERLKKLEEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKEIMERKK 752 (1136)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccccchhhhhccchhhHHHHhhcccccccCcchhhhhhhhhHHHHHHHHhhhhh
Confidence 334789999999998888888888766666665555543 67777777777888888888777655444444444444
Q ss_pred cc
Q 001172 478 ED 479 (1133)
Q Consensus 478 ~~ 479 (1133)
+|
T Consensus 753 ~E 754 (1136)
T KOG4786|consen 753 RE 754 (1136)
T ss_pred hc
Confidence 44
No 97
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.60 E-value=3.7 Score=48.82 Aligned_cols=20 Identities=55% Similarity=0.727 Sum_probs=15.4
Q ss_pred CCccccccCCCCCCCCccccC
Q 001172 502 DVLEDVSDVSDSVDGGAEVLQ 522 (1133)
Q Consensus 502 d~~e~~sd~sd~~d~~~e~~~ 522 (1133)
-++-+|||++.+.|+ .|||-
T Consensus 68 ~~~~~v~dl~~~~~~-~~V~v 87 (533)
T KOG0556|consen 68 RELTDVSDLDESNDG-SEVLV 87 (533)
T ss_pred cceeehhhhhhhcCC-ceEEE
Confidence 455579999999999 66654
No 98
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=73.39 E-value=9.7 Score=48.43 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 001172 389 TVEIFVLAHIFSNKIEVAYQEAV 411 (1133)
Q Consensus 389 ~~~ifa~~k~F~~rv~~Ay~E~~ 411 (1133)
|=+||+-.++|+ .||.|++
T Consensus 975 mEEFFaDi~tFr----naf~ea~ 993 (1102)
T KOG1924|consen 975 MEEFFADIRTFR----NAFLEAV 993 (1102)
T ss_pred HHHHHHHHHHHH----HHHHHHH
Confidence 345888788884 5565555
No 99
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.13 E-value=19 Score=43.19 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=14.2
Q ss_pred CCCCCceE------eecceeeehhhHHHHHHHhh
Q 001172 318 DTPPPIVH------VENDMFVLVDDVLLLLERAA 345 (1133)
Q Consensus 318 e~p~~~~~------v~~d~~~l~~Dll~~leR~a 345 (1133)
.+|..++. |.++||. .-++..|..|+
T Consensus 262 ~lP~~~~vmSE~nEvs~~i~~--~~v~~~l~k~~ 293 (440)
T KOG2357|consen 262 NLPESFVVMSESNEVSGAIFE--DKVVSQLNKYG 293 (440)
T ss_pred CCCcceeeeecchhhhhhhhc--hHHHHHHHHHH
Confidence 55655544 4455554 35666666663
No 100
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.93 E-value=24 Score=38.56 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 001172 428 LAESEQKAKRGAAEKEKKAKKKL 450 (1133)
Q Consensus 428 ~~~~e~~~kk~~k~kekk~~~k~ 450 (1133)
++.++|+++-++++||++....+
T Consensus 122 ~~~~~R~~Rla~~~~E~~~~i~e 144 (227)
T KOG4691|consen 122 RLHELRIARLAQEEREQEQRIAE 144 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555665544433
No 101
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=72.67 E-value=18 Score=42.49 Aligned_cols=7 Identities=0% Similarity=0.140 Sum_probs=3.0
Q ss_pred hHHHHHH
Q 001172 400 SNKIEVA 406 (1133)
Q Consensus 400 ~~rv~~A 406 (1133)
++|....
T Consensus 95 ~~~~~~~ 101 (346)
T TIGR02794 95 EQRAAAE 101 (346)
T ss_pred HHHHHHH
Confidence 3444433
No 102
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=72.44 E-value=49 Score=37.17 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=10.4
Q ss_pred hHHHHHHHhhhhhHHHHHHH
Q 001172 388 RTVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 388 r~~~ifa~~k~F~~rv~~Ay 407 (1133)
=+|=+|+|-+.|..-|..++
T Consensus 15 FlILv~lL~~fl~kPi~~~l 34 (250)
T PRK14474 15 FLILVYLLRRFLYKPIIQVM 34 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666644444443
No 103
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.29 E-value=14 Score=40.56 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Q 001172 413 LKRQEELIREEEA-AWLAESEQKAK 436 (1133)
Q Consensus 413 ~~rQ~~Ll~E~E~-e~~~~~e~~~k 436 (1133)
...|+++|+|..+ ++++++|-++|
T Consensus 112 keeQ~~rl~ekD~~sek~k~Elrek 136 (216)
T KOG4031|consen 112 KEEQMKRLQEKDEASEKLKEELREK 136 (216)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3578899999855 44445554333
No 104
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=71.37 E-value=1.3 Score=47.73 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhHHHHHH
Q 001172 451 AKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 451 ak~~e~~rk~~e~~~ee~ 468 (1133)
.+++++++++++.+++|+
T Consensus 37 ~~ee~r~k~ee~~~~~E~ 54 (188)
T PF09756_consen 37 EREEERRKKEEEEEEEEE 54 (188)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 105
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=71.04 E-value=40 Score=34.82 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 409 EAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
-++-..|++++...+++.+..+++-++.+.
T Consensus 28 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 57 (159)
T PRK09173 28 ARSLDARADRIKNELAEARRLREEAQQLLA 57 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888887766665444443
No 106
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=70.11 E-value=25 Score=38.22 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=2.0
Q ss_pred HhhHHhhhHHHHHHHhhhhhHHHHHHH
Q 001172 381 RLTELGRRTVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa~~k~F~~rv~~Ay 407 (1133)
-+...|+=+|-++++..++-++|...|
T Consensus 32 ~L~~yGWyil~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 32 FLSSYGWYILFGCILLYLLWQKLSPSF 58 (190)
T ss_dssp ------------------------HHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 455678777776666666557777666
No 107
>PTZ00234 variable surface protein Vir12; Provisional
Probab=70.06 E-value=6.1 Score=47.57 Aligned_cols=27 Identities=19% Similarity=0.592 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCcc--------cccccccCCCCC
Q 001172 825 GPDLAPATHGYIPQS--------YRNVKMGNPVGS 851 (1133)
Q Consensus 825 g~dpS~~~~sy~pqs--------YrNAi~g~~~~~ 851 (1133)
+++|.+..|+.+--+ |||+|||-.+-+
T Consensus 341 ~~~~~~~~~~~l~~~~d~~dSn~~rniim~~ailG 375 (433)
T PTZ00234 341 APEVNPDTSNFLEKTFGILKSEYFRHSIVGASIIG 375 (433)
T ss_pred CCcCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 777777777766543 999999955433
No 108
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=69.86 E-value=21 Score=37.80 Aligned_cols=23 Identities=17% Similarity=0.061 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 001172 417 EELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
..+++|+++|.|+..|++.-+..
T Consensus 80 rr~~EE~~EE~Rl~rere~~q~~ 102 (157)
T PF15236_consen 80 RRRREEEEEEERLAREREELQRQ 102 (157)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445555666776666544443
No 109
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=69.85 E-value=31 Score=39.53 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCcccchhHHHHHHhhHHhhhHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 368 EDFNKDSIERDERRLTELGRRTVE-IFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWL 428 (1133)
Q Consensus 368 ~dvs~dtve~ee~~~~Elgrr~~~-ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~ 428 (1133)
+|+..|.-++|-.|..|-+.|--- -.-...+ -||....+=+.+...+-++++|.|.+..
T Consensus 184 ed~pdd~e~rD~kry~e~KNr~~r~k~K~~Dn--aRl~~LV~~A~~~DPRIK~fkEqeK~~k 243 (379)
T COG5269 184 EDYPDDMEERDRKRYSEAKNREKRAKLKNQDN--ARLKRLVQIAKKRDPRIKSFKEQEKEMK 243 (379)
T ss_pred hhcCcchhhhhhHHHHHhhhHHHHHhhhchhH--HHHHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 335444444565555554433211 0000111 2455555556666777788888766543
No 110
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.50 E-value=68 Score=35.10 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 001172 389 TVEIFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 389 ~~~ifa~~k~F~~rv~~Ay~E~ 410 (1133)
.|=+|+|.++|-.+|.....+.
T Consensus 64 liL~~lL~k~~~~pI~~vLe~R 85 (204)
T PRK09174 64 GLFYLFMSRVILPRIGGIIETR 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655555554443
No 111
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=69.20 E-value=46 Score=39.66 Aligned_cols=73 Identities=26% Similarity=0.276 Sum_probs=38.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-hhhhhHHHHH
Q 001172 395 LAHIFSNKIEVAYQEAVALKRQEELIREE-----EAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNN-RKGKEKKREE 467 (1133)
Q Consensus 395 ~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~-----E~e~~~~~e~~~kk~~k~kekk~~~k~ak~~e~~-rk~~e~~~ee 467 (1133)
|++-+.-.|..+-+|---+.||+..++-- |+.++.++|-.++-++..-|--++.+.|-||+.+ ||+++-.+.|
T Consensus 286 lar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 286 LARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKE 364 (442)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777888888788887665543 4444444444343333333444444445444422 3444433333
No 112
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=68.75 E-value=51 Score=34.19 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=4.8
Q ss_pred HHHHhhcCCC
Q 001172 340 LLERAALEPL 349 (1133)
Q Consensus 340 ~leR~al~~L 349 (1133)
+|-++...||
T Consensus 38 lL~k~l~~Pi 47 (156)
T CHL00118 38 LLNIILYKPL 47 (156)
T ss_pred HHHHHHHHHH
Confidence 4445554444
No 113
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.18 E-value=69 Score=35.64 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=6.3
Q ss_pred HHHHHHHhhhhhH
Q 001172 389 TVEIFVLAHIFSN 401 (1133)
Q Consensus 389 ~~~ifa~~k~F~~ 401 (1133)
+|=+|+|-+.|..
T Consensus 16 lil~~lL~kfl~k 28 (246)
T TIGR03321 16 LILVWLLKRFLYR 28 (246)
T ss_pred HHHHHHHHHHhHH
Confidence 4445555555533
No 114
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=68.13 E-value=6 Score=50.78 Aligned_cols=14 Identities=57% Similarity=0.601 Sum_probs=8.2
Q ss_pred CCCCccccccCCCC
Q 001172 500 KPDVLEDVSDVSDS 513 (1133)
Q Consensus 500 k~d~~e~~sd~sd~ 513 (1133)
||-..++++|-+|+
T Consensus 782 ~p~~k~da~~~~ds 795 (975)
T KOG0112|consen 782 KPHRKGDASDESDS 795 (975)
T ss_pred CCCCcCcCccCccc
Confidence 66666666555443
No 115
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=67.96 E-value=85 Score=32.98 Aligned_cols=30 Identities=17% Similarity=0.006 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001172 408 QEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 408 ~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
-.++...|+.++=.++.+++++++|-++-.
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~ 60 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQALL 60 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777778877777766544433
No 116
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=66.93 E-value=37 Score=36.18 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=15.8
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001172 386 GRRTVEIFVLAHIFSNKIEVAYQEAV 411 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~rv~~Ay~E~~ 411 (1133)
--=.|=+|+|.++|-.+|.....+..
T Consensus 39 I~F~iL~~ll~k~l~~PI~~~l~~R~ 64 (181)
T PRK13454 39 VTLVAIYFVLTRVALPRIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566667776666766665553
No 117
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=66.83 E-value=27 Score=39.80 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=57.0
Q ss_pred chhhhhhhhcccccccccccccccccccCCCCcccccccc-CCCCCCCcccCccCCccccccCCcccccCccccccCCCC
Q 001172 978 HLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFS-FPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSV 1056 (1133)
Q Consensus 978 HLDIINDLL~eeq~~g~~~~~~~~~~~~~~~~~~f~~~fs-~~g~~~~~~d~~s~~~~~rf~~t~~y~d~g~~~~y~~~~ 1056 (1133)
-+.||=|||.|--.-|++.---..|.--.-+|-.|-.+|- .||+-+-.+--| .+--.=--..+.++|+.-+
T Consensus 183 ~i~~il~~i~e~pikgsa~py~p~fyd~t~dyggf~M~f~d~pg~pgpapqrg--------gqgpp~~~~sdlmay~r~G 254 (390)
T KOG2192|consen 183 CIKIILDLISESPIKGSAQPYDPNFYDETYDYGGFTMMFDDRPGRPGPAPQRG--------GQGPPPPRGSDLMAYDRRG 254 (390)
T ss_pred HHHHHHHHhhcCCcCCcCCcCCccccCcccccCCceeecCCCCCCCCCCCCCC--------CCCCCCCCccccceeccCC
Confidence 3677788888877777765433334333345666665554 444433211111 1111111122456666554
Q ss_pred ---CcccccccccCccCCCCCCCCccCCCCCCCCCCCC
Q 001172 1057 ---GHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPG 1091 (1133)
Q Consensus 1057 ---~~~~~~r~~~~~~~~~~Y~ng~~D~~~~~~W~~~~ 1091 (1133)
.-|+++=+|+++ --.+|-+|...|+-|+|+.
T Consensus 255 rpG~rydg~vdFs~d----etw~saidtw~~SewqmaY 288 (390)
T KOG2192|consen 255 RPGDRYDGMVDFSAD----ETWPSAIDTWSPSEWQMAY 288 (390)
T ss_pred CCCcccccccccccc----ccCCCcCCCcCcccccccc
Confidence 236666666554 3358899999999999953
No 118
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=66.07 E-value=18 Score=35.40 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 392 IFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAES 431 (1133)
Q Consensus 392 ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~ 431 (1133)
+|++.++|...|...+ ..|+.++..++++.+...+
T Consensus 13 ~~~l~~~~~~pi~~~l-----~~R~~~I~~~~~~a~~~~~ 47 (132)
T PF00430_consen 13 FFLLNKFLYKPIKKFL-----DERKAKIQSELEEAEELKE 47 (132)
T ss_dssp HHHHHHHTHHHHHHHC-----S--S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHH
Confidence 4444555554444433 3445555555554444433
No 119
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=65.61 E-value=38 Score=39.08 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001172 404 EVAYQEAVALKRQEELIRE 422 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~Ll~E 422 (1133)
+...++.|.+.|..+|.+.
T Consensus 158 lr~~q~~fe~~R~aEl~e~ 176 (291)
T PF06098_consen 158 LRRQQRAFEELRNAELAEV 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456667766666666543
No 120
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=64.92 E-value=44 Score=34.97 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001172 440 AEKEKKAKKKLAKQKRNNR 458 (1133)
Q Consensus 440 k~kekk~~~k~ak~~e~~r 458 (1133)
|+++|+.++|+++...+..
T Consensus 85 KkR~KR~KkK~kk~~~k~~ 103 (142)
T PF06658_consen 85 KKRAKRQKKKQKKKKKKKK 103 (142)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 4444444444444444433
No 121
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=64.57 E-value=1.1e+02 Score=32.34 Aligned_cols=25 Identities=24% Similarity=0.107 Sum_probs=13.8
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHH
Q 001172 386 GRRTVEIFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 386 grr~~~ifa~~k~F~~rv~~Ay~E~ 410 (1133)
-.=+|=+|+|-+.|...|...+.+.
T Consensus 24 i~Flil~~iL~~~~~kpi~~~l~~R 48 (173)
T PRK13460 24 VTFLVVVLVLKKFAWDVILKALDER 48 (173)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445566666677655555554433
No 122
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=64.18 E-value=27 Score=37.98 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 001172 402 KIEVAYQEAVALK 414 (1133)
Q Consensus 402 rv~~Ay~E~~A~~ 414 (1133)
-+.++.+|++..-
T Consensus 76 d~v~~rqEa~eaA 88 (190)
T PF06936_consen 76 DVVVRRQEAMEAA 88 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3344455554433
No 123
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=63.99 E-value=1.1e+02 Score=32.21 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=7.3
Q ss_pred HHHHHHhhhhhHHHHHH
Q 001172 390 VEIFVLAHIFSNKIEVA 406 (1133)
Q Consensus 390 ~~ifa~~k~F~~rv~~A 406 (1133)
|=+|+|-+.+...|...
T Consensus 30 il~~lL~~~l~kpi~~~ 46 (175)
T PRK14472 30 IVLLILKKIAWGPILSA 46 (175)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 44444444443333333
No 124
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=63.54 E-value=1.2e+02 Score=31.31 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=9.8
Q ss_pred HHHHHHHhhhhhHHHHHHHH
Q 001172 389 TVEIFVLAHIFSNKIEVAYQ 408 (1133)
Q Consensus 389 ~~~ifa~~k~F~~rv~~Ay~ 408 (1133)
+|=+|+|.+.+...|.....
T Consensus 16 ~il~~iL~~f~~kpi~~~l~ 35 (159)
T PRK13461 16 IILLLILKHFFFDKIKAVID 35 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 44455555555444444433
No 125
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=62.60 E-value=68 Score=39.15 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001172 417 EELIREEEAAWLAESE 432 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~e 432 (1133)
+++|||-|-.+.+|++
T Consensus 535 md~lrerelreslekq 550 (641)
T KOG3915|consen 535 MDFLRERELRESLEKQ 550 (641)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555554444443
No 126
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=77 Score=38.64 Aligned_cols=7 Identities=71% Similarity=0.624 Sum_probs=4.7
Q ss_pred HHHHHhh
Q 001172 339 LLLERAA 345 (1133)
Q Consensus 339 ~~leR~a 345 (1133)
.+|||+|
T Consensus 76 eaLERaA 82 (630)
T KOG0742|consen 76 EALERAA 82 (630)
T ss_pred HHHHHHH
Confidence 4777774
No 127
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=62.45 E-value=1.2e+02 Score=31.98 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=12.5
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHHH
Q 001172 385 LGRRTVEIFVLAHIFSNKIEVAYQ 408 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~rv~~Ay~ 408 (1133)
+-.=+|=+|+|-+.|...|.....
T Consensus 25 iInFliL~~lL~~~l~~pi~~~l~ 48 (173)
T PRK13453 25 VLTFIVLLALLKKFAWGPLKDVMD 48 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666544444433
No 128
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=62.11 E-value=14 Score=45.19 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=10.0
Q ss_pred CCeEEEEEEEecCC
Q 001172 109 CNHLSLFLCVANHD 122 (1133)
Q Consensus 109 ~dyLSLYLeL~s~~ 122 (1133)
+.+|+||-++....
T Consensus 177 ~~~l~vyr~~~~~~ 190 (591)
T KOG2505|consen 177 GSVLSVYRCILHVG 190 (591)
T ss_pred CceEEEeeeccccc
Confidence 57888887776544
No 129
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=61.96 E-value=16 Score=44.55 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=15.3
Q ss_pred CchHHHHhhhhhHHHhhHHHHHhhhcc
Q 001172 217 TNVEQICRRFVEERRGKLGRLIEDKAR 243 (1133)
Q Consensus 217 SNLgaTC~~fved~~~hLG~LLqS~~~ 243 (1133)
..|+. |.+-|+.+-.-|..|-+...+
T Consensus 190 eg~~e-y~~siekln~~ls~lqq~mqr 215 (708)
T KOG3654|consen 190 EGLGE-YNRSIEKLNAALSSLQQDMQR 215 (708)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33554 666777666666665555543
No 130
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.55 E-value=46 Score=43.07 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=8.3
Q ss_pred hHHHHHHhhccccccc
Q 001172 287 TLVMDSLYSGLKALEG 302 (1133)
Q Consensus 287 plvmd~L~~glk~le~ 302 (1133)
=+++|+++.|+...+.
T Consensus 410 LvLlDE~~~GtDp~eg 425 (782)
T PRK00409 410 LVLFDELGAGTDPDEG 425 (782)
T ss_pred EEEecCCCCCCCHHHH
Confidence 3455555555554444
No 131
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=61.37 E-value=10 Score=41.40 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001172 415 RQEELIREEEAAW 427 (1133)
Q Consensus 415 rQ~~Ll~E~E~e~ 427 (1133)
..+++++|.++++
T Consensus 160 ~~~~~~~~~~~~e 172 (196)
T PF08229_consen 160 KDAKELEEFEKEE 172 (196)
T ss_pred hhHHHHHHHHHHH
Confidence 3334444443333
No 132
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=15 Score=41.98 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001172 410 AVALKRQEEL 419 (1133)
Q Consensus 410 ~~A~~rQ~~L 419 (1133)
++.++.-+++
T Consensus 99 kik~k~~k~~ 108 (290)
T KOG2689|consen 99 KIKQKQIKRE 108 (290)
T ss_pred HhcchhHHHH
Confidence 3333333333
No 133
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=60.65 E-value=11 Score=46.70 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=15.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 393 FVLAHIFSNKIEVAYQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 393 fa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~ 425 (1133)
++.-+++..++..-|.=.=-..+|.++||+++.
T Consensus 408 iA~~R~es~k~~~ry~~~sDvr~QLrflEqldk 440 (563)
T KOG2341|consen 408 IAEHRVESEKSRERYEIISDVRRQLRFLEQLDK 440 (563)
T ss_pred HHHHHHHHhhccchheehHHHHHHHHHHHHHHH
Confidence 443444444444444433344555555555544
No 134
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.36 E-value=26 Score=36.13 Aligned_cols=45 Identities=27% Similarity=0.272 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 001172 413 LKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNN 457 (1133)
Q Consensus 413 ~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kekk~~~k~ak~~e~~ 457 (1133)
-+-|+.|-.+.|+.+...+.+...+++.+|+++.+.|++|.+++-
T Consensus 85 TkAQ~ALk~q~E~~K~~rk~~~k~~re~~k~~kf~lkq~K~k~KH 129 (132)
T PF11208_consen 85 TKAQQALKLQREQRKKERKKRSKEQREAEKERKFELKQQKRKEKH 129 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566655555544433333222333455566666666655543
No 135
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=60.23 E-value=1.7e+02 Score=32.84 Aligned_cols=14 Identities=64% Similarity=0.665 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 001172 440 AEKEKKAKKKLAKQ 453 (1133)
Q Consensus 440 k~kekk~~~k~ak~ 453 (1133)
++||.|+++|+||.
T Consensus 187 kEkeeKKk~K~aKk 200 (217)
T PF10147_consen 187 KEKEEKKKKKEAKK 200 (217)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 136
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=59.80 E-value=25 Score=42.91 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=5.9
Q ss_pred hHHHHHhhhcc
Q 001172 233 KLGRLIEDKAR 243 (1133)
Q Consensus 233 hLG~LLqS~~~ 243 (1133)
+|...+.+-++
T Consensus 146 ~f~~~f~~ry~ 156 (460)
T KOG1363|consen 146 TFVDNFGDRYG 156 (460)
T ss_pred HHHHHHHHhcC
Confidence 35555555554
No 137
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=59.72 E-value=7.6 Score=42.31 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001172 407 YQEAVALKRQEELIREE 423 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~ 423 (1133)
|.|..-.+.+++..+|+
T Consensus 156 YAe~~~~~~~~~~~~~e 172 (196)
T PF08229_consen 156 YAERKDAKELEEFEKEE 172 (196)
T ss_pred HHhhhhHHHHHHHHHHH
Confidence 33333333333333333
No 138
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=59.61 E-value=11 Score=41.65 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=6.8
Q ss_pred CCCCCCccc
Q 001172 498 PEKPDVLED 506 (1133)
Q Consensus 498 ~~k~d~~e~ 506 (1133)
+++|-|-||
T Consensus 156 am~PmTkEE 164 (225)
T PF10500_consen 156 AMAPMTKEE 164 (225)
T ss_pred hcCCCCHHH
Confidence 467888887
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=57.77 E-value=22 Score=46.76 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=12.0
Q ss_pred cccccCCchhhhhhhhc
Q 001172 971 VLVDEFPHLDIINDLLD 987 (1133)
Q Consensus 971 ~v~dEFPHLDIINDLL~ 987 (1133)
+||+-|-.|+..|++..
T Consensus 1279 ~vg~lf~~ls~v~sv~~ 1295 (1330)
T KOG0949|consen 1279 GVGELFKSLSVVNSVVL 1295 (1330)
T ss_pred ccchhhhhhhcchHHHH
Confidence 67777777777777543
No 140
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=57.14 E-value=32 Score=42.78 Aligned_cols=27 Identities=30% Similarity=0.173 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001172 418 ELIREEEAAWLAESEQKAKRGAAEKEK 444 (1133)
Q Consensus 418 ~Ll~E~E~e~~~~~e~~~kk~~k~kek 444 (1133)
.=|+++|.-.++|+||+..|+++++.+
T Consensus 430 ~QLrflEqldk~E~Erk~~~ere~l~r 456 (563)
T KOG2341|consen 430 RQLRFLEQLDKAEEERKESREREELLR 456 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666666666666655555444433
No 141
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=56.81 E-value=6.3 Score=50.33 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccccccCCCCCCcccchh----HH-HHHHhhHHhhhHHHHHH
Q 001172 337 VLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSI----ER-DERRLTELGRRTVEIFV 394 (1133)
Q Consensus 337 ll~~leR~al~~Lp~~d~~~~q~~~~~~~~~~dvs~dtv----e~-ee~~~~Elgrr~~~ifa 394 (1133)
+|.++|.+.+..|+. .|.+.+++. .+..+. |- -+|+|-||..+||+|..
T Consensus 791 il~iaDqlli~~Lk~---Ice~~ll~k------l~lk~~~~llefaamY~ak~L~~~C~dfic 844 (1267)
T KOG0783|consen 791 ILSIADQLLILELKS---ICEQSLLRK------LNLKTLPTLLEFAAMYHAKELYSRCIDFIC 844 (1267)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhH------hcccchHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445556666666654 466665554 333332 22 69999999999999876
No 142
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=56.39 E-value=22 Score=41.55 Aligned_cols=31 Identities=35% Similarity=0.279 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001172 420 IREEEAAWLAESEQKAKRGAAEKEKKAKKKL 450 (1133)
Q Consensus 420 l~E~E~e~~~~~e~~~kk~~k~kekk~~~k~ 450 (1133)
|.|.++.++.+.+|.++..++-|+|..+.+.
T Consensus 85 l~ey~~~~~~~rer~E~eL~eLkekq~~r~~ 115 (361)
T KOG3634|consen 85 LGEYEDFDRIEREREEKELKELKEKQEKRKL 115 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666655555555554
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=55.99 E-value=56 Score=40.65 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=10.1
Q ss_pred hhhhHHHHHHhhhhhhhhhcccCCch
Q 001172 459 KGKEKKREERSSMALSDRLEDENPSD 484 (1133)
Q Consensus 459 k~~e~~~ee~~~~~~~~~~~~~~~~~ 484 (1133)
-|.|+.+-|+ .+-+++++.+..++.
T Consensus 670 mErERLEreR-M~ve~eRr~eqeRih 694 (940)
T KOG4661|consen 670 MERERLERER-MKVEEERRDEQERIH 694 (940)
T ss_pred HHHHHHHHHH-HHHHHhhcchhhhhh
Confidence 3333333333 333344444444444
No 144
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.48 E-value=59 Score=42.14 Aligned_cols=15 Identities=0% Similarity=0.164 Sum_probs=7.7
Q ss_pred ceeecCeEEEEEEEe
Q 001172 89 AFEVGGYKWYILIYP 103 (1133)
Q Consensus 89 ~FsVGGhkWRI~~YP 103 (1133)
.++..+-.+.|-+-.
T Consensus 188 ~it~r~~r~~i~vk~ 202 (782)
T PRK00409 188 IITIRNDRYVLPVKA 202 (782)
T ss_pred eEEEECCEEEEEech
Confidence 344555556555543
No 145
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=55.40 E-value=1.2e+02 Score=31.99 Aligned_cols=10 Identities=40% Similarity=0.415 Sum_probs=3.9
Q ss_pred HHHHhhcCCC
Q 001172 340 LLERAALEPL 349 (1133)
Q Consensus 340 ~leR~al~~L 349 (1133)
+|-+++-.||
T Consensus 38 lL~~fl~kPi 47 (167)
T PRK08475 38 ILWYFAAKPL 47 (167)
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 146
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=55.19 E-value=18 Score=44.17 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=22.0
Q ss_pred HhhHHhhhHHHHHH---HhhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001172 381 RLTELGRRTVEIFV---LAHIFSNKIEVAYQEAVALK-RQEELIREEE 424 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa---~~k~F~~rv~~Ay~E~~A~~-rQ~~Ll~E~E 424 (1133)
.++|++..-+..|. -+-.|. +..|+++.-++ ||.+|..+.|
T Consensus 451 ~M~Elk~~~~~~~~~~~~~id~~---~ikykdkkrEk~Rq~~l~~~~~ 495 (567)
T KOG0345|consen 451 KMPELKQYKIGEFFFPKPAIDFS---EIKYKDKKREKQRQQKLKVRKE 495 (567)
T ss_pred CcHHHhhhhccceeccCCCcchh---hhcccchHHHHHHHHHHHHHHH
Confidence 34677776666542 234455 56677766554 4444443333
No 147
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=54.66 E-value=1.7e+02 Score=30.09 Aligned_cols=10 Identities=20% Similarity=0.188 Sum_probs=7.4
Q ss_pred HhhhHHHHHH
Q 001172 385 LGRRTVEIFV 394 (1133)
Q Consensus 385 lgrr~~~ifa 394 (1133)
=|||||..+.
T Consensus 8 RnRRmFG~Ll 17 (131)
T PF04696_consen 8 RNRRMFGGLL 17 (131)
T ss_pred hhhhHHHHHH
Confidence 3889998654
No 148
>COG4499 Predicted membrane protein [Function unknown]
Probab=54.28 E-value=12 Score=44.44 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 001172 414 KRQEELIREEEA 425 (1133)
Q Consensus 414 ~rQ~~Ll~E~E~ 425 (1133)
+...+||.|.++
T Consensus 365 ~~r~e~lk~~n~ 376 (434)
T COG4499 365 DKRQELLKEYNK 376 (434)
T ss_pred hHHHHHHHHHHH
Confidence 334455555544
No 149
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.99 E-value=72 Score=37.15 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001172 405 VAYQEAVALKRQEEL 419 (1133)
Q Consensus 405 ~Ay~E~~A~~rQ~~L 419 (1133)
+.++|.++.+|++-|
T Consensus 318 ~s~qet~eaKr~e~~ 332 (406)
T KOG3859|consen 318 FSLQETYEAKRNEFL 332 (406)
T ss_pred ccHHHHHHHHHHHHH
Confidence 347777777777654
No 150
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=53.78 E-value=88 Score=38.00 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 001172 389 TVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 389 ~~~ifa~~k~F~~rv~~Ay 407 (1133)
+|=+|+|-+.|...|....
T Consensus 12 lIl~~lL~kfl~~Pi~~~l 30 (445)
T PRK13428 12 AVIVFLVWRFVVPPVRRLM 30 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444443
No 151
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=53.59 E-value=1.6e+02 Score=34.07 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 001172 405 VAYQEAVALKRQ 416 (1133)
Q Consensus 405 ~Ay~E~~A~~rQ 416 (1133)
+=|++..+.+|.
T Consensus 109 aqY~D~LaRkR~ 120 (276)
T PF12037_consen 109 AQYEDELARKRY 120 (276)
T ss_pred HHHHHHHHHHHH
Confidence 335555554443
No 152
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=53.57 E-value=1e+02 Score=40.03 Aligned_cols=15 Identities=0% Similarity=0.113 Sum_probs=8.7
Q ss_pred ceeecCeEEEEEEEe
Q 001172 89 AFEVGGYKWYILIYP 103 (1133)
Q Consensus 89 ~FsVGGhkWRI~~YP 103 (1133)
.+++.+-.|.|-+-.
T Consensus 183 ~it~r~~r~vipvk~ 197 (771)
T TIGR01069 183 IVTIRNGRYVLPLKS 197 (771)
T ss_pred eEEEECCEEEEEeeH
Confidence 355556667665543
No 153
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=53.52 E-value=2.2e+02 Score=30.06 Aligned_cols=23 Identities=13% Similarity=-0.116 Sum_probs=12.8
Q ss_pred HhhhHHHHHHHhhhhhHHHHHHH
Q 001172 385 LGRRTVEIFVLAHIFSNKIEVAY 407 (1133)
Q Consensus 385 lgrr~~~ifa~~k~F~~rv~~Ay 407 (1133)
.-.=+|=||+|-+.+..-|..+.
T Consensus 26 iinflIl~~lL~~fl~kpI~~~l 48 (174)
T PRK07352 26 LINLAIVIGLLYYFGRGFLGKIL 48 (174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 45556666666666644444443
No 154
>PHA00451 protein kinase
Probab=53.31 E-value=32 Score=39.54 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=6.2
Q ss_pred HhhhhhHHHhhHHH
Q 001172 223 CRRFVEERRGKLGR 236 (1133)
Q Consensus 223 C~~fved~~~hLG~ 236 (1133)
|.++-.+.+.|+..
T Consensus 141 C~r~~nd~h~~ya~ 154 (362)
T PHA00451 141 CYRESNDVHHHYAA 154 (362)
T ss_pred cccccchHHHHHHH
Confidence 33344444445544
No 155
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=53.07 E-value=2.3e+02 Score=29.46 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 001172 389 TVEIFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 389 ~~~ifa~~k~F~~rv~~Ay~E~ 410 (1133)
++=+|+|-+.|...|..+..+.
T Consensus 19 lil~~lL~~fl~kpi~~~l~~R 40 (164)
T PRK14473 19 LLLIFLLRTFLYRPVLNLLNER 40 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666665555555443
No 156
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=53.07 E-value=1.4e+02 Score=31.14 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=11.7
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 001172 391 EIFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 391 ~ifa~~k~F~~rv~~Ay~E~ 410 (1133)
=+|+|.+.|-..|.....+.
T Consensus 21 l~~ll~~~l~~pi~~~l~~R 40 (164)
T PRK14471 21 LLLLLAKFAWKPILGAVKER 40 (164)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34455666666666665544
No 157
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=52.38 E-value=26 Score=42.86 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=7.7
Q ss_pred HHHhhhhhhhHHHHH
Q 001172 453 QKRNNRKGKEKKREE 467 (1133)
Q Consensus 453 ~~e~~rk~~e~~~ee 467 (1133)
|||+.+||+|+++.|
T Consensus 430 eeer~~keee~arre 444 (708)
T KOG3654|consen 430 EEERAPKEEEVARRE 444 (708)
T ss_pred HhhhcchhhhhhHHH
Confidence 344555555555543
No 158
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.29 E-value=1.3e+02 Score=32.85 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=10.0
Q ss_pred HHHHHHHhhcCCCC
Q 001172 337 VLLLLERAALEPLP 350 (1133)
Q Consensus 337 ll~~leR~al~~Lp 350 (1133)
|+.+|-++.-.|+.
T Consensus 61 lv~lL~k~l~kPi~ 74 (205)
T PRK06231 61 LLLLGIFLFWKPTQ 74 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 34578888888874
No 159
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=51.65 E-value=36 Score=37.59 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHH--HHHhhhhhhhHHHHHHhhhhhh-hhhcccC
Q 001172 440 AEKEKKAKKKLAK--QKRNNRKGKEKKREERSSMALS-DRLEDEN 481 (1133)
Q Consensus 440 k~kekk~~~k~ak--~~e~~rk~~e~~~ee~~~~~~~-~~~~~~~ 481 (1133)
.+.|+|+++.+++ +|+++.+++|-+++|+..++.| ++.-||.
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEEs 212 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEAEEKRKREREWQKNFEES 212 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777666644 4444446666677765555444 3333443
No 160
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.55 E-value=79 Score=36.43 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 406 AYQEAVALKRQEELIREEEAAWLAESE 432 (1133)
Q Consensus 406 Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e 432 (1133)
-...+.....+.+|+|-++.++++.++
T Consensus 99 kik~k~~k~~e~e~~E~~~~~k~~~ks 125 (290)
T KOG2689|consen 99 KIKQKQIKREELELREALEREKQRRKS 125 (290)
T ss_pred HhcchhHHHHHHHHHHhhhhHHhhhhc
Confidence 344555566777777777766666554
No 161
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=51.39 E-value=48 Score=40.53 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=3.8
Q ss_pred chhhhccCH
Q 001172 248 CAFWLGIDQ 256 (1133)
Q Consensus 248 Raf~~a~~~ 256 (1133)
-+|+.|.+.
T Consensus 169 ~a~~~A~~~ 177 (460)
T KOG1363|consen 169 NAFLEAFDR 177 (460)
T ss_pred HHHHHHHhh
Confidence 344444443
No 162
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=50.83 E-value=20 Score=39.65 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 001172 415 RQEELIREEEAAWL 428 (1133)
Q Consensus 415 rQ~~Ll~E~E~e~~ 428 (1133)
+|.+.|+|.+++++
T Consensus 120 ~~~~~i~ekD~~e~ 133 (225)
T PF01086_consen 120 ERDKRIEEKDAEEE 133 (225)
T ss_dssp HHTTTSTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445544444333
No 163
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=49.96 E-value=2.9e+02 Score=27.99 Aligned_cols=6 Identities=17% Similarity=0.219 Sum_probs=2.3
Q ss_pred hhhhhH
Q 001172 396 AHIFSN 401 (1133)
Q Consensus 396 ~k~F~~ 401 (1133)
.+++.+
T Consensus 21 ~~~l~~ 26 (147)
T TIGR01144 21 AKAIET 26 (147)
T ss_pred HHHHHH
Confidence 344433
No 164
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=49.91 E-value=1.1e+02 Score=34.00 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHhhhh
Q 001172 404 EVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRK-GKEKKREERSSMA 472 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kekk~~~k~ak~~e~~rk-~~e~~~ee~~~~~ 472 (1133)
.+.|.-.||-=+++.|..|.|.+....+=+..+-.+++-|.+-.+..+|.+--.++ +++.+-||++-+.
T Consensus 166 qtlyeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~e 235 (259)
T KOG4001|consen 166 QTLYESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKE 235 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56677888888999998888766544443333333444454444444444333332 3333334444333
No 165
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=49.86 E-value=1.9e+02 Score=29.13 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=9.0
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 001172 392 IFVLAHIFSNKIEVAYQE 409 (1133)
Q Consensus 392 ifa~~k~F~~rv~~Ay~E 409 (1133)
+|+|.++|-..|.....+
T Consensus 19 ~~ll~~~l~~pi~~~l~~ 36 (140)
T PRK07353 19 TFILNALFYKPVGKVVEE 36 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555444443
No 166
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.78 E-value=1.3e+02 Score=33.56 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 001172 396 AHIFSNKIEVAYQEAVALKRQEE 418 (1133)
Q Consensus 396 ~k~F~~rv~~Ay~E~~A~~rQ~~ 418 (1133)
+-++ .|+....++-+.+..+++
T Consensus 110 ~lvI-~R~~~ll~~l~~l~~~~~ 131 (216)
T KOG1962|consen 110 SLVI-RRLHTLLRELATLRANEK 131 (216)
T ss_pred HHHH-HHHHHHHHHHHHHHhhHH
Confidence 4444 566666666665555533
No 167
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=49.73 E-value=1.8e+02 Score=29.88 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=6.3
Q ss_pred HHHHhhhhhHHHHHH
Q 001172 392 IFVLAHIFSNKIEVA 406 (1133)
Q Consensus 392 ifa~~k~F~~rv~~A 406 (1133)
+|+|.+.|-..|...
T Consensus 21 ~~~l~kfl~kPi~~~ 35 (141)
T PRK08476 21 IVILNSWLYKPLLKF 35 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 168
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.62 E-value=71 Score=39.55 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001172 391 EIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 391 ~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
+|..+.--+...++..|.+.+-...+.-|++-+-.|+ .-+++++|.
T Consensus 491 ~iL~l~d~lR~~~l~~~g~~led~~g~~lvk~v~~e~-~l~~~eek~ 536 (586)
T KOG2007|consen 491 EILELCDTLRDSDLLELGVRLEDRKGSTLVKAVDREE-LLQEREEKT 536 (586)
T ss_pred HHHHHhHHHHHhhHHHhhhHHHhCCchHHHHHhhhHH-HHHHHHHHh
Confidence 6666666665556666666665555555665555554 333444443
No 169
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=49.52 E-value=86 Score=36.71 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCCccccccCCCCCCCCccccCCCCCCCCCCCCCcCCCCcccCCC
Q 001172 501 PDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDASEVIPP 545 (1133)
Q Consensus 501 ~d~~e~~sd~sd~~d~~~e~~~~d~edr~~s~v~w~~d~~e~~~~ 545 (1133)
+.-+|+.+.+.-+ .+--..+.+|.++--.+|.+-.-|+..+
T Consensus 343 ~~~~ee~tespa~----g~eptstp~a~es~t~~~t~~~~~~p~~ 383 (410)
T KOG4715|consen 343 ETHLEESTESPAN----GEEPTSTPEAKESGTTGTTTENKEKPEE 383 (410)
T ss_pred cccccccccCCCC----CCCCCCCccccccccccCccccccCcch
Confidence 3445555444332 2333456788888888998876665443
No 170
>PF08243 SPT2: SPT2 chromatin protein; InterPro: IPR013256 This entry includes the Saccharomyces cerevisiae (Baker's yeast) protein SPT2 which is a chromatin protein involved in transcriptional regulation []. These proteins shows conservation of several domains across numerous species, including having a cluster of positively charged amino acids. This cluster probably functions in the binding properties of the proteins []. Sin1p/Spt2p probably modulates the local chromatin structure by binding two strands of double-stranded DNA at their crossover point. Sin1p/Spt2p has sequence similarity to HMG1 and serves as a negative transcriptional regulator of a small family of genes that are activated by the SWI/SNF chromatin-remodelling complex. It is also involved in maintaining the integrity of chromatin during transcription elongation. Sin1p/Spt2 is required for, and is directly involved in, the efficient recruitment of the mRNA cleavage/polyadenylation complex []. Spt2 is also involved in regulating levels of histone H3 over transcribed regions [].
Probab=49.26 E-value=24 Score=35.54 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001172 402 KIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA 439 (1133)
Q Consensus 402 rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~ 439 (1133)
-+++.|.+....+.+-..|..+|.++.++.|++.++.|
T Consensus 73 dMEA~~~~I~~EE~rS~r~A~~ED~~e~~~e~~~~~~K 110 (116)
T PF08243_consen 73 DMEASFADIEKEEKRSARIARLEDEREERREEEEEREK 110 (116)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35667888777777777777777766555555554444
No 171
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=49.15 E-value=44 Score=41.81 Aligned_cols=6 Identities=17% Similarity=0.074 Sum_probs=3.1
Q ss_pred CeEEEE
Q 001172 110 NHLSLF 115 (1133)
Q Consensus 110 dyLSLY 115 (1133)
.|||++
T Consensus 272 ~~vsvh 277 (758)
T KOG0343|consen 272 VYVSVH 277 (758)
T ss_pred cEEEEe
Confidence 455555
No 172
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.92 E-value=2e+02 Score=37.54 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=7.4
Q ss_pred hHHHHHHhhccccccc
Q 001172 287 TLVMDSLYSGLKALEG 302 (1133)
Q Consensus 287 plvmd~L~~glk~le~ 302 (1133)
=+++|+++.|+...|.
T Consensus 405 LvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 405 LVLFDELGAGTDPDEG 420 (771)
T ss_pred EEEecCCCCCCCHHHH
Confidence 3444555555544433
No 173
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=48.05 E-value=3.2e+02 Score=27.92 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.2
Q ss_pred HHHHhhhhhHHHHHHHHHH
Q 001172 392 IFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 392 ifa~~k~F~~rv~~Ay~E~ 410 (1133)
+|+|-+++...|.....+.
T Consensus 18 ~~il~~~~~~pi~~~l~~R 36 (156)
T PRK05759 18 VWFIMKFVWPPIMKALEER 36 (156)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3444555555555554433
No 174
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=47.99 E-value=14 Score=45.37 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=9.5
Q ss_pred hhhHHHhhHHHHHhhh
Q 001172 226 FVEERRGKLGRLIEDK 241 (1133)
Q Consensus 226 fved~~~hLG~LLqS~ 241 (1133)
|...+..||-.+|..+
T Consensus 126 F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 126 FKERLDEYLRPQLRKG 141 (517)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4445566777777553
No 175
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=47.96 E-value=77 Score=37.30 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 001172 608 SRGKNQR 614 (1133)
Q Consensus 608 ~rg~~~~ 614 (1133)
++||-|.
T Consensus 203 ~mtKeQq 209 (361)
T KOG3634|consen 203 GMTKEQQ 209 (361)
T ss_pred cccHHHH
Confidence 4455443
No 176
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=47.67 E-value=35 Score=41.56 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001172 406 AYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLA 451 (1133)
Q Consensus 406 Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kekk~~~k~a 451 (1133)
.|+-.|++++|+.+-+=+..|+++++-+..-+.+|.-||+-+++.+
T Consensus 496 ~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~lt 541 (807)
T KOG0066|consen 496 LFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLT 541 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 3556677777655444333344444444333444555555555543
No 177
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.44 E-value=22 Score=40.97 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=14.1
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhh
Q 001172 450 LAKQKRNNRKGKEKKREERSSMA 472 (1133)
Q Consensus 450 ~ak~~e~~rk~~e~~~ee~~~~~ 472 (1133)
++||||.+|||+|-.|.|++...
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Confidence 45666777777766666655443
No 178
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=47.23 E-value=48 Score=35.26 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=12.2
Q ss_pred HHHhhHHhhhHHHHHHHhhhh
Q 001172 379 ERRLTELGRRTVEIFVLAHIF 399 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F 399 (1133)
++|++--||.+.+.-+ -..|
T Consensus 88 DKRlaadgr~l~~~~I-Nd~F 107 (158)
T PF02731_consen 88 DKRLAADGRGLQDVEI-NDKF 107 (158)
T ss_pred HHHHhhcccccCCccc-cHHH
Confidence 5666656777666655 4555
No 179
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=46.84 E-value=1.8e+02 Score=35.74 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhh
Q 001172 439 AAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRL 477 (1133)
Q Consensus 439 ~k~kekk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~ 477 (1133)
++|||.+.++=++-++|-.|.+++..+|....|...+|.
T Consensus 484 krEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKL 522 (527)
T PF15066_consen 484 KREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKL 522 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 367777777777999999999999888887777665543
No 180
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=46.79 E-value=57 Score=32.75 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHH
Q 001172 441 EKEKKAKKKLAKQKRNNRKGKEKKR 465 (1133)
Q Consensus 441 ~kekk~~~k~ak~~e~~rk~~e~~~ 465 (1133)
.|-|-++-||||+|-...-++=+..
T Consensus 26 Rk~K~~RLKQAKeEA~~Eie~yr~q 50 (108)
T KOG1772|consen 26 RKRKLRRLKQAKEEAEKEIEEYRSQ 50 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655544433333
No 181
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=46.44 E-value=10 Score=43.10 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=28.9
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCH
Q 001172 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQ 256 (1133)
Q Consensus 215 PpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~ 256 (1133)
|+.|+|.|| ||+.+||...+...||.+++...+
T Consensus 1 GL~NlGnTC---------Y~NS~LQ~L~~~~~fr~~ll~~~~ 33 (327)
T cd02664 1 GLINLGNTC---------YMNSVLQALFMAKDFRRQVLSLNL 33 (327)
T ss_pred CCcCCcccH---------HHHHHHHHHHCcHHHHHHHHcCCc
Confidence 578999999 999999999998899998777653
No 182
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=46.34 E-value=31 Score=42.82 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 001172 399 FSNKIEVAYQEAVALKRQEE 418 (1133)
Q Consensus 399 F~~rv~~Ay~E~~A~~rQ~~ 418 (1133)
++|||+-|-.++...-|+++
T Consensus 351 ~~qr~lkas~dar~rar~ek 370 (645)
T KOG0681|consen 351 KKQRILKASTDARLRARVEK 370 (645)
T ss_pred HHHHHHHhhhhhhccccccc
Confidence 45788888888876667666
No 183
>COG5644 Uncharacterized conserved protein [Function unknown]
Probab=46.26 E-value=55 Score=40.80 Aligned_cols=32 Identities=41% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001172 409 EAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEK 444 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kek 444 (1133)
|---.-+|.+|.+||.= .+||||||.+|-|-|
T Consensus 370 e~~~rt~qlr~mrelmf----reerkakr~~kiksk 401 (869)
T COG5644 370 EVAERTRQLRFMRELMF----REERKAKRVAKIKSK 401 (869)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHH
Confidence 33345578888888743 456778877655544
No 184
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.91 E-value=98 Score=36.21 Aligned_cols=8 Identities=38% Similarity=0.401 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 001172 335 DDVLLLLE 342 (1133)
Q Consensus 335 ~Dll~~le 342 (1133)
.|-|...|
T Consensus 96 NdYLE~vE 103 (309)
T TIGR00570 96 NDYLEEVE 103 (309)
T ss_pred HHHHHHHH
Confidence 34444333
No 185
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.98 E-value=50 Score=40.07 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=20.5
Q ss_pred HhhhHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 385 LGRRTVE-IFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLA 429 (1133)
Q Consensus 385 lgrr~~~-ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 429 (1133)
.-+.+|+ |||.+.+. --.|+|-+-+--=+..++.+-.||+.
T Consensus 102 I~~~~FelifAFDEiv----sLGyre~v~laQikty~eMdSHEEKi 143 (512)
T KOG2635|consen 102 ILENAFELIFAFDEIV----SLGYRENVNLAQIKTYLEMDSHEEKI 143 (512)
T ss_pred HHHhhhhhhhccchhh----hhcccccccHHHhhhhhccccHHHHH
Confidence 3345666 45544443 34488887554444444444344433
No 186
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=44.92 E-value=2.5e+02 Score=33.08 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=23.8
Q ss_pred HhhhHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 385 LGRRTVEIFV-LAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAE 430 (1133)
Q Consensus 385 lgrr~~~ifa-~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~ 430 (1133)
-+||||-.+. .-.-|++ ..-+..-++.+|.++.+-+|+..+.+
T Consensus 140 RNRRmFG~LlGTL~KFkq---E~kr~t~rq~KraEieqKlEeq~~eE 183 (340)
T KOG3756|consen 140 RNRRMFGLLLGTLQKFKQ---ESKRATERQVKRAEIEQKLEEQAEEE 183 (340)
T ss_pred HhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998433 4455763 22222225666777766665544433
No 187
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.90 E-value=2.1e+02 Score=33.98 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 401 NKIEVAYQEAVALKRQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 401 ~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
.|+-.+|+--||..+|.+=-.+-|+|.|+-+|+
T Consensus 115 dr~C~~F~~yia~~k~~kde~lkE~e~r~~ee~ 147 (469)
T KOG3878|consen 115 DRMCSAFRPYIAAVKQDKDETLKEKELRLMEEK 147 (469)
T ss_pred HhcchhhhhHHHHhhhhhhhHHHHHHHHHHHhh
Confidence 455556666666666655333333344443333
No 188
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=44.63 E-value=8.5 Score=43.27 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=29.9
Q ss_pred eeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001172 212 VRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 212 I~VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
++||+.|+|.|| ||+.+||...+...||.+++..
T Consensus 1 g~~GL~N~GntC---------Y~NsvLQ~L~~~~~f~~~~l~~ 34 (334)
T cd02659 1 GYVGLKNQGATC---------YMNSLLQQLYMTPEFRNAVYSI 34 (334)
T ss_pred CCCCcccCCcch---------HHHHHHHHHhcCHHHHHHHHcC
Confidence 468999999999 9999999999888888876664
No 189
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=44.40 E-value=69 Score=38.44 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=11.8
Q ss_pred HHHhhHHhhhHHHHHHHhhhh
Q 001172 379 ERRLTELGRRTVEIFVLAHIF 399 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F 399 (1133)
+++|+-.||-+-++-+ -.+|
T Consensus 261 dkRlaadgrglq~v~I-NdnF 280 (506)
T KOG2441|consen 261 DKRLAADGRGLQDVHI-NDNF 280 (506)
T ss_pred hhhhhhccCCccccee-cccH
Confidence 5667767776655533 4444
No 190
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.34 E-value=2.2e+02 Score=30.31 Aligned_cols=11 Identities=18% Similarity=-0.167 Sum_probs=6.6
Q ss_pred HHHHHhhcCCC
Q 001172 339 LLLERAALEPL 349 (1133)
Q Consensus 339 ~~leR~al~~L 349 (1133)
.+|-+++-.|+
T Consensus 39 ~lL~~fl~kPI 49 (184)
T CHL00019 39 GVLIYFGKGVL 49 (184)
T ss_pred HHHHHHhHhHH
Confidence 45666666665
No 191
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=44.21 E-value=3.9e+02 Score=28.51 Aligned_cols=16 Identities=44% Similarity=0.337 Sum_probs=6.2
Q ss_pred HHHHhhhhhhhhhccc
Q 001172 465 REERSSMALSDRLEDE 480 (1133)
Q Consensus 465 ~ee~~~~~~~~~~~~~ 480 (1133)
++|+..+..+..+..+
T Consensus 100 aeEr~~~~Eer~~~~e 115 (149)
T PF15346_consen 100 AEERLRMEEERRRELE 115 (149)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444333333333
No 192
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=43.95 E-value=1e+02 Score=35.85 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 001172 407 YQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRK 459 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kekk~~~k~ak~~e~~rk 459 (1133)
|+++. ..-++.|+-|++..+++.+|.|.+-..-+||=+..|+.-.|.-++|+
T Consensus 242 YRqKk-Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r~ 293 (294)
T KOG4571|consen 242 YRQKK-RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKRV 293 (294)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88886 45567788888888888888888777788888888888766666553
No 193
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=43.78 E-value=19 Score=47.01 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhh
Q 001172 419 LIREEEAAWLAESEQKAKRGA-------------AEKEKKAKKKLAKQKRNNRKGKEKKREERSSMA 472 (1133)
Q Consensus 419 Ll~E~E~e~~~~~e~~~kk~~-------------k~kekk~~~k~ak~~e~~rk~~e~~~ee~~~~~ 472 (1133)
+=-|.|++++++.|+++|+.. |+|-+|+.+|..|..+..+.-.+++++|++++.
T Consensus 549 se~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~keT~~a~k~EkeRrk 615 (1567)
T KOG1015|consen 549 SESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKETQNALKEEKERRK 615 (1567)
T ss_pred ccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchhHHHHHHHHHHHHH
Confidence 445666666667777777752 444456666666666555544444455544433
No 194
>PRK12704 phosphodiesterase; Provisional
Probab=43.56 E-value=62 Score=40.08 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=12.0
Q ss_pred cccccCCCCcccCCCcccee
Q 001172 569 ASVMDDSSSTCSTDSVPSVV 588 (1133)
Q Consensus 569 ~s~~~~~sstcs~ds~~~~~ 588 (1133)
..+|.=-++-|.++...|||
T Consensus 195 ~~a~qr~a~~~~~e~~~~~v 214 (520)
T PRK12704 195 AQAIQRCAADHVAETTVSVV 214 (520)
T ss_pred HHHHHhhcchhhhhhceeee
Confidence 34555566666666666555
No 195
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.91 E-value=1.9e+02 Score=40.46 Aligned_cols=40 Identities=13% Similarity=0.387 Sum_probs=29.5
Q ss_pred HHHHHhhHHhhhHHH--HHHHhhhhhHHHHHHHHHHHHHHHH
Q 001172 377 RDERRLTELGRRTVE--IFVLAHIFSNKIEVAYQEAVALKRQ 416 (1133)
Q Consensus 377 ~ee~~~~Elgrr~~~--ifa~~k~F~~rv~~Ay~E~~A~~rQ 416 (1133)
+.++..++...+-+. +|+|+.+...|-..+|.+++-.+..
T Consensus 941 r~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~ 982 (1486)
T PRK04863 941 KQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAK 982 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhc
Confidence 355555555555543 8999999999999999999885543
No 196
>smart00784 SPT2 SPT2 chromatin protein. This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation PUBMED:15563464.
Probab=42.69 E-value=41 Score=33.91 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 403 IEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 403 v~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
+++.|.+....+.+-..|..+|.++.++.|+++|+.
T Consensus 69 MEa~~~~i~~EE~~s~r~a~~ED~~e~~~e~~~~~~ 104 (111)
T smart00784 69 MEAGGADIQEEERRSARLARLEDREEERLEKEEERE 104 (111)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 556666666666666666665555554444444433
No 197
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.49 E-value=4.4e+02 Score=29.94 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 001172 402 KIEVAYQEAVAL-KRQEELIREEEAAW-LAESEQKAKRGAAEKEKKAKKKLAKQKRN 456 (1133)
Q Consensus 402 rv~~Ay~E~~A~-~rQ~~Ll~E~E~e~-~~~~e~~~kk~~k~kekk~~~k~ak~~e~ 456 (1133)
+++..++|..++ .++.+|++|.+++. +.+.|-+++++ |-|.-++.+|-+++|+
T Consensus 62 ~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~--elEvl~~n~Q~lkeE~ 116 (246)
T KOG4657|consen 62 NLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS--ELEVLRRNLQLLKEEK 116 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 334455555544 36777777766544 33445555554 3444344444333333
No 198
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=42.12 E-value=58 Score=33.17 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001172 409 EAVALKRQEELIREEEA 425 (1133)
Q Consensus 409 E~~A~~rQ~~Ll~E~E~ 425 (1133)
+++|..+=.=+|-|..+
T Consensus 75 d~IA~~rVqPvLdeI~e 91 (126)
T PF12757_consen 75 DAIARKRVQPVLDEIDE 91 (126)
T ss_pred HHHHHHhcCCchHHHHH
Confidence 44444444555555544
No 199
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=41.07 E-value=45 Score=36.08 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=2.7
Q ss_pred HHHHhhh
Q 001172 433 QKAKRGA 439 (1133)
Q Consensus 433 ~~~kk~~ 439 (1133)
+|+|+.+
T Consensus 15 kkakka~ 21 (177)
T PF09831_consen 15 KKAKKAK 21 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 200
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=41.01 E-value=3.5e+02 Score=28.86 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=4.7
Q ss_pred hhhhhHHHHHHH
Q 001172 396 AHIFSNKIEVAY 407 (1133)
Q Consensus 396 ~k~F~~rv~~Ay 407 (1133)
.+.|-.+|...+
T Consensus 28 ~kf~~ppI~~iL 39 (155)
T PRK06569 28 YKFITPKAEEIF 39 (155)
T ss_pred HHHhHHHHHHHH
Confidence 444333443333
No 201
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.68 E-value=5.4e+02 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=19.7
Q ss_pred HhhHHhhhHHHHHHHhhhhhHHHHHHHH
Q 001172 381 RLTELGRRTVEIFVLAHIFSNKIEVAYQ 408 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa~~k~F~~rv~~Ay~ 408 (1133)
++.++.-++.++...-..++.+|..+..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666676777777766777777777766
No 202
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=40.63 E-value=1.2e+02 Score=36.69 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=8.0
Q ss_pred hhhhhhcccCCCCC
Q 001172 486 KKEFIVEDAQPLPE 499 (1133)
Q Consensus 486 ~~~~~~~~~~~~~~ 499 (1133)
++..++.++.++++
T Consensus 118 ~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 118 EMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555556666665
No 203
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=40.37 E-value=1.5e+02 Score=31.66 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=12.7
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhHHHHH
Q 001172 419 LIREEEAAWLA-ESEQKAKRGAAEKEK 444 (1133)
Q Consensus 419 Ll~E~E~e~~~-~~e~~~kk~~k~kek 444 (1133)
.++++|.+.++ +++.++.|..++++.
T Consensus 72 r~k~~E~err~~EE~~EE~Rl~rere~ 98 (157)
T PF15236_consen 72 RQKQEEEERRRREEEEEEERLAREREE 98 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444433 445555566555553
No 204
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=39.75 E-value=1.2e+02 Score=33.19 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---HH-----HHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhcc
Q 001172 412 ALKRQEELIREEEAAWLAESEQKAKRGA---AE-----KEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 479 (1133)
Q Consensus 412 A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~---k~-----kekk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~~~ 479 (1133)
...++..+++|+=+++-...-+.-+... .- |.-+..+..+|..|...|.-|+..|-++.++.++.+.+
T Consensus 116 ~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk 191 (192)
T COG5374 116 VVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191 (192)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 4567888888876665332211111111 11 11122223355555556666666666666666555443
No 205
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.40 E-value=5.6e+02 Score=31.44 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.8
Q ss_pred hhHHHHHHHhhcCC
Q 001172 335 DDVLLLLERAALEP 348 (1133)
Q Consensus 335 ~Dll~~leR~al~~ 348 (1133)
--+|.++-|.+..|
T Consensus 118 a~~L~A~~r~g~~p 131 (420)
T COG4942 118 AEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHhccCCC
Confidence 44667778877776
No 206
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=39.34 E-value=14 Score=44.30 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=32.6
Q ss_pred ceeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001172 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 210 ~tI~VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
..+.||+.|+|.|| +|+.+||...+...||.+++...
T Consensus 116 ~~G~vGL~NlGnTC---------YmNsvLQ~L~~~p~lr~~~l~~~ 152 (440)
T cd02669 116 LPGFVGLNNIKNND---------YANVIIQALSHVKPIRNFFLLYE 152 (440)
T ss_pred cCCccCccCCCCch---------HHHHHHHHHHCCHHHHHHHhhcc
Confidence 35789999999999 99999999999999999877543
No 207
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=39.16 E-value=94 Score=30.46 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 001172 403 IEVAYQEAVALKRQ 416 (1133)
Q Consensus 403 v~~Ay~E~~A~~rQ 416 (1133)
|.....+....+.+
T Consensus 35 I~~~~~~a~~~~~e 48 (132)
T PF00430_consen 35 IQSELEEAEELKEE 48 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 44444444433333
No 208
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=39.10 E-value=28 Score=45.07 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=14.7
Q ss_pred CCCCCCccc-cccCCCCCCC
Q 001172 498 PEKPDVLED-VSDVSDSVDG 516 (1133)
Q Consensus 498 ~~k~d~~e~-~sd~sd~~d~ 516 (1133)
..|-|..++ +||+.|-++=
T Consensus 784 ~~k~da~~~~dsd~~~~~sl 803 (975)
T KOG0112|consen 784 HRKGDASDESDSDSNDKLSL 803 (975)
T ss_pred CCcCcCccCccccccCcccc
Confidence 357788888 8999998763
No 209
>PHA03247 large tegument protein UL36; Provisional
Probab=38.99 E-value=1.2e+03 Score=35.24 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.5
Q ss_pred HHHHHhhcccc
Q 001172 289 VMDSLYSGLKA 299 (1133)
Q Consensus 289 vmd~L~~glk~ 299 (1133)
...+|+..|+-
T Consensus 2226 aLaalWs~L~P 2236 (3151)
T PHA03247 2226 ALAALWSCMFP 2236 (3151)
T ss_pred HHHHHHHhhCc
Confidence 34455555543
No 210
>PRK11637 AmiB activator; Provisional
Probab=38.29 E-value=3.3e+02 Score=32.72 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=4.9
Q ss_pred CCCCCCCcC
Q 001172 528 RDTSPVNWD 536 (1133)
Q Consensus 528 r~~s~v~w~ 536 (1133)
+.+++..|-
T Consensus 314 ~i~~~fg~~ 322 (428)
T PRK11637 314 PTLHRFGEQ 322 (428)
T ss_pred CccCCCCCC
Confidence 555555554
No 211
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=37.95 E-value=3.9e+02 Score=27.08 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001172 404 EVAYQEAVALKRQEELIREEEAA 426 (1133)
Q Consensus 404 ~~Ay~E~~A~~rQ~~Ll~E~E~e 426 (1133)
...|.....+..+++.|.+.|.|
T Consensus 30 ~tSwekr~~~R~~~~~~K~~ekE 52 (108)
T PF03879_consen 30 RTSWEKRMEKRLELKAIKEKEKE 52 (108)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 212
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=37.81 E-value=28 Score=41.95 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001172 408 QEAVALKRQEE 418 (1133)
Q Consensus 408 ~E~~A~~rQ~~ 418 (1133)
++..-+++-++
T Consensus 204 tk~leqkr~Ek 214 (506)
T KOG2507|consen 204 TKNLEQKRVEK 214 (506)
T ss_pred Hhhccccchhh
Confidence 33333333333
No 213
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.95 E-value=6.4e+02 Score=31.39 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=15.6
Q ss_pred hHHHHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Q 001172 375 IERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAV 411 (1133)
Q Consensus 375 ve~ee~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~ 411 (1133)
|..=..+...|.+++-++-. .++.+|+.+..+..
T Consensus 253 i~~a~~~i~~L~~~l~~l~~---~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 253 IAHAKERIDALQKELAELKE---EEEEELERALEEQR 286 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44333344455665555333 33345555544444
No 214
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.89 E-value=1.2e+02 Score=35.53 Aligned_cols=8 Identities=25% Similarity=0.297 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001172 429 AESEQKAK 436 (1133)
Q Consensus 429 ~~~e~~~k 436 (1133)
++.|++++
T Consensus 151 ~~~E~~~~ 158 (309)
T TIGR00570 151 LEFEKEEE 158 (309)
T ss_pred HHHHHHHH
Confidence 33333333
No 215
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=36.42 E-value=2.4e+02 Score=37.43 Aligned_cols=119 Identities=24% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCcccchhHHHHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001172 367 GEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKA 446 (1133)
Q Consensus 367 ~~dvs~dtve~ee~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kekk~ 446 (1133)
+.|...-..+-..++-.||-+-|=+-.. ...+.-..-++-|-.||+++ ..+....+.|+-|..-+||+|.
T Consensus 1024 ~~d~~~r~~el~~rq~~el~~~~~~~~~---------~e~e~k~~hl~~~~~~l~kl-~~eaq~~Q~k~LK~~~e~e~kE 1093 (1189)
T KOG1265|consen 1024 NSDNAGRVRELVNRQTQELLEMRREQYE---------EEFELKEEHLKEQISLLRKL-LSEAQTNQTKALKESLEKETKE 1093 (1189)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhh-----hhHHHHHHhhhh----------hhhhhcccCCchhhhhhhhcccC
Q 001172 447 KKKLAKQKRNNRKG-----KEKKREERSSMA----------LSDRLEDENPSDEKKEFIVEDAQ 495 (1133)
Q Consensus 447 ~~k~ak~~e~~rk~-----~e~~~ee~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 495 (1133)
.+|...++..++-. ++|++.|+..+. ++-|++++...+..+..++++.+
T Consensus 1094 lk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~ 1157 (1189)
T KOG1265|consen 1094 LKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLE 1157 (1189)
T ss_pred HHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 216
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=36.41 E-value=69 Score=36.15 Aligned_cols=7 Identities=57% Similarity=0.757 Sum_probs=3.8
Q ss_pred HHHHHHH
Q 001172 418 ELIREEE 424 (1133)
Q Consensus 418 ~Ll~E~E 424 (1133)
.||+|||
T Consensus 150 ~Ll~ELe 156 (244)
T PF04889_consen 150 ALLRELE 156 (244)
T ss_pred HHHHHHH
Confidence 4555664
No 217
>PLN02316 synthase/transferase
Probab=36.31 E-value=78 Score=42.41 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=15.3
Q ss_pred cCCCCcccCCCccceeeecCccCCCccc
Q 001172 573 DDSSSTCSTDSVPSVVMYGPYKGNSLAN 600 (1133)
Q Consensus 573 ~~~sstcs~ds~~~~~~~g~~~~~~~~~ 600 (1133)
=+-++++.+.+ +.|.+.|.| |+|++
T Consensus 335 YN~~~~~L~~~-~~v~i~gg~--N~W~~ 359 (1036)
T PLN02316 335 YNRSSGPLAHS-TEIWIHGGY--NNWID 359 (1036)
T ss_pred ECCCCCCCCCC-CcEEEEEeE--cCCCC
Confidence 34455666653 667788854 66654
No 218
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=35.80 E-value=81 Score=33.40 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=7.1
Q ss_pred eeehhhHHHHHHHh
Q 001172 331 FVLVDDVLLLLERA 344 (1133)
Q Consensus 331 ~~l~~Dll~~leR~ 344 (1133)
|+-++|.+.+|-.+
T Consensus 30 Fi~s~dpi~~L~~~ 43 (159)
T PF11861_consen 30 FIKSEDPIDLLGSA 43 (159)
T ss_pred HhcCCcHHHHHHHc
Confidence 33345555555554
No 219
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=35.78 E-value=44 Score=36.63 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 001172 407 YQEAVALKRQEEL 419 (1133)
Q Consensus 407 y~E~~A~~rQ~~L 419 (1133)
|-|..-.+.+++.
T Consensus 156 YAer~~~~~~~~~ 168 (196)
T smart00786 156 YAERKDAKQKEEF 168 (196)
T ss_pred HHHHhHHHHHHHH
Confidence 4444433333333
No 220
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=35.24 E-value=2e+02 Score=31.34 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=15.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 001172 430 ESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGK 461 (1133)
Q Consensus 430 ~~e~~~kk~~k~kekk~~~k~ak~~e~~rk~~ 461 (1133)
+.|+++.+.+.+-++++.+.+|+.+..++..+
T Consensus 176 e~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~ 207 (242)
T cd03405 176 EGEEEAERIRADADRERTVILAEAYREAQEIR 207 (242)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555554433
No 221
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=35.23 E-value=23 Score=38.79 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=29.4
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001172 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 213 ~VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
+||+.|+|.|| +|+.+||...+...||.+++...
T Consensus 1 ~~GL~N~gntC---------Y~NsvLQ~L~~~~~~~~~~~~~~ 34 (304)
T cd02661 1 GAGLQNLGNTC---------FLNSVLQCLTHTPPLANYLLSRE 34 (304)
T ss_pred CCCccccCchh---------HHHHHHHHhhCCHHHHHHHhcch
Confidence 37899999999 99999999998888988776544
No 222
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.07 E-value=2.4e+02 Score=34.40 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=4.6
Q ss_pred CCCCCCCcC
Q 001172 528 RDTSPVNWD 536 (1133)
Q Consensus 528 r~~s~v~w~ 536 (1133)
+..-||+..
T Consensus 298 ~l~~PV~G~ 306 (420)
T COG4942 298 QLAWPVTGR 306 (420)
T ss_pred CcCCCCCCc
Confidence 445566554
No 223
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=34.99 E-value=2.2e+02 Score=32.34 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.4
Q ss_pred hhhHHHHHHHhh
Q 001172 386 GRRTVEIFVLAH 397 (1133)
Q Consensus 386 grr~~~ifa~~k 397 (1133)
..-.++-+.+.|
T Consensus 85 ~~~aye~Wl~~K 96 (264)
T PF13904_consen 85 SLSAYEEWLSAK 96 (264)
T ss_pred ccchHHHHHHHH
Confidence 334555554333
No 224
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=34.56 E-value=1e+02 Score=38.13 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=13.7
Q ss_pred cccccCCCCcccCCCcccee
Q 001172 569 ASVMDDSSSTCSTDSVPSVV 588 (1133)
Q Consensus 569 ~s~~~~~sstcs~ds~~~~~ 588 (1133)
..+|.=-++-|.++...+||
T Consensus 189 ~~aiqr~a~~~~~e~~~~~v 208 (514)
T TIGR03319 189 ATAIQRYAGDHVAETTVSVV 208 (514)
T ss_pred HHHHHhccchhhhhheeeeE
Confidence 45566667777777777666
No 225
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=34.04 E-value=1.5e+02 Score=38.14 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001172 401 NKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 437 (1133)
Q Consensus 401 ~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk 437 (1133)
.+|-++++|.=|+.+|.+=|+++-+....+.|.++|.
T Consensus 416 kKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkd 452 (961)
T KOG4673|consen 416 KKVQALTKERDALRREQKSLKKELAAALLKDELAEKD 452 (961)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567889999999999998888888777766655554
No 226
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=33.87 E-value=2.6e+02 Score=32.50 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=5.0
Q ss_pred hhHHHHHH
Q 001172 387 RRTVEIFV 394 (1133)
Q Consensus 387 rr~~~ifa 394 (1133)
+|++|+..
T Consensus 219 ~~LV~~A~ 226 (379)
T COG5269 219 KRLVQIAK 226 (379)
T ss_pred HHHHHHHH
Confidence 46666665
No 227
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=33.62 E-value=1.7e+02 Score=33.55 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 408 QEAVALKRQEELIREEEAAWLAESE 432 (1133)
Q Consensus 408 ~E~~A~~rQ~~Ll~E~E~e~~~~~e 432 (1133)
.+....+...+||.|.+.-+..|+.
T Consensus 116 SD~HM~KVr~kLl~~~~~ie~~E~~ 140 (271)
T PF05890_consen 116 SDEHMEKVRQKLLKEQKRIEASEEA 140 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777776554444443
No 228
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.24 E-value=3.7e+02 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001172 410 AVALKRQEELIREEEA 425 (1133)
Q Consensus 410 ~~A~~rQ~~Ll~E~E~ 425 (1133)
.+|...|+++++-|+.
T Consensus 196 q~ak~eyNe~Vr~lv~ 211 (508)
T KOG0717|consen 196 QYARQEYNETVRNLVG 211 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666776666654
No 229
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.17 E-value=1.9e+02 Score=34.45 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHh
Q 001172 458 RKGKEKKREERS 469 (1133)
Q Consensus 458 rk~~e~~~ee~~ 469 (1133)
+|.++.++.|++
T Consensus 223 ~k~eee~aaERe 234 (561)
T KOG1103|consen 223 KKGEEEAAAERE 234 (561)
T ss_pred CCChHHHHHHHh
Confidence 345555555544
No 230
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=33.02 E-value=31 Score=41.29 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=5.7
Q ss_pred HHHhhHHHHHhhh
Q 001172 229 ERRGKLGRLIEDK 241 (1133)
Q Consensus 229 d~~~hLG~LLqS~ 241 (1133)
+-++.|..-|.++
T Consensus 278 eyRk~L~~YL~~K 290 (498)
T KOG2573|consen 278 EYRKQLSDYLKDK 290 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 231
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=32.99 E-value=1.7e+02 Score=36.41 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=4.4
Q ss_pred cCCCccc
Q 001172 594 KGNSLAN 600 (1133)
Q Consensus 594 ~~~~~~~ 600 (1133)
|||.|+.
T Consensus 429 ~g~v~~~ 435 (492)
T PF02029_consen 429 KGNVFSS 435 (492)
T ss_pred cCCcccC
Confidence 6676644
No 232
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.87 E-value=4.1e+02 Score=29.94 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=11.8
Q ss_pred HHHhhHHhhhHHHHHHHhhh
Q 001172 379 ERRLTELGRRTVEIFVLAHI 398 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~ 398 (1133)
|+...||-+|+++|=--.+.
T Consensus 4 Er~k~Ele~rL~q~eee~~~ 23 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRR 23 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44556677777776653333
No 233
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.81 E-value=16 Score=46.57 Aligned_cols=18 Identities=44% Similarity=0.427 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001172 440 AEKEKKAKKKLAKQKRNN 457 (1133)
Q Consensus 440 k~kekk~~~k~ak~~e~~ 457 (1133)
..|.|++.++.+||++.+
T Consensus 793 t~kakar~k~~~~ek~~~ 810 (929)
T KOG2062|consen 793 TAKAKARAKKEAKEKEPN 810 (929)
T ss_pred hhhhhhhhhhhhhhcccc
Confidence 555666666666665433
No 234
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.65 E-value=3.6e+02 Score=30.62 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.9
Q ss_pred ccccccccCC
Q 001172 598 LANYQNQKSP 607 (1133)
Q Consensus 598 ~~~~~~~~s~ 607 (1133)
|+-.++.+.|
T Consensus 220 F~~~~~~~~~ 229 (233)
T KOG4739|consen 220 FSPVRVHKLP 229 (233)
T ss_pred cchhhhcccc
Confidence 3333444433
No 235
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=32.57 E-value=1.2e+02 Score=33.47 Aligned_cols=11 Identities=0% Similarity=0.253 Sum_probs=4.9
Q ss_pred HHHHhhHHhhh
Q 001172 378 DERRLTELGRR 388 (1133)
Q Consensus 378 ee~~~~Elgrr 388 (1133)
++|+....+++
T Consensus 108 ~~~~k~~~~~~ 118 (197)
T PRK12585 108 RSVKKDDIKKK 118 (197)
T ss_pred HHHHhhhhhhc
Confidence 44554444433
No 236
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=32.53 E-value=4.8e+02 Score=29.16 Aligned_cols=24 Identities=17% Similarity=0.251 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 401 NKIEVAYQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 401 ~rv~~Ay~E~~A~~rQ~~Ll~E~E~ 425 (1133)
+|-+..| |.++.+.|-+-|.+.+.
T Consensus 24 ~Rpeily-e~l~kL~pwq~latk~d 47 (231)
T COG5493 24 QRPEILY-EVLAKLTPWQQLATKQD 47 (231)
T ss_pred hChHHHH-HHHHhhchHHHHHHHHH
Confidence 5666666 45555555544444333
No 237
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=32.49 E-value=64 Score=30.46 Aligned_cols=14 Identities=14% Similarity=-0.044 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 001172 417 EELIREEEAAWLAE 430 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~ 430 (1133)
-+|..|+|.+|+++
T Consensus 42 wkLaK~ie~~ere~ 55 (74)
T PF15086_consen 42 WKLAKAIEKEEREK 55 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777776665543
No 238
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=32.34 E-value=1.6e+02 Score=32.60 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=10.4
Q ss_pred CccCCEEEEEEEEEEee
Q 001172 177 FKDGDTLIIKAQVQVIR 193 (1133)
Q Consensus 177 FLvDDsLTIeCdVtVIk 193 (1133)
++..|...|.+++.|.-
T Consensus 80 v~T~D~~~v~vd~~v~y 96 (266)
T cd03404 80 MLTGDENIVDVEFAVQY 96 (266)
T ss_pred eEeCCCCEEEEEEEEEE
Confidence 34556667777766643
No 239
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=32.33 E-value=13 Score=42.82 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=29.3
Q ss_pred ceeeecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhh
Q 001172 210 ELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWL 252 (1133)
Q Consensus 210 ~tI~VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~ 252 (1133)
....||+.|+|.|| ||+.+||...+...||..+.
T Consensus 21 ~~~~~GL~NlGnTC---------YmNSvLQ~L~~~p~fr~~l~ 54 (332)
T cd02671 21 LLPFVGLNNLGNTC---------YLNSVLQVLYFCPGFKHGLK 54 (332)
T ss_pred CCCCcceeccCceE---------eHHHHHHHHHcChHHHHHHH
Confidence 46789999999999 99999999998778876543
No 240
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=32.13 E-value=2.5e+02 Score=31.10 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=8.5
Q ss_pred ccCCEEEEEEEEEEe
Q 001172 178 KDGDTLIIKAQVQVI 192 (1133)
Q Consensus 178 LvDDsLTIeCdVtVI 192 (1133)
+..|...|.+++.|.
T Consensus 54 ~T~D~~~v~vd~~v~ 68 (261)
T TIGR01933 54 LTGDENIVNVEMNVQ 68 (261)
T ss_pred EeCCCCEEEEEEEEE
Confidence 445555666666554
No 241
>PRK12704 phosphodiesterase; Provisional
Probab=31.82 E-value=2.5e+02 Score=34.97 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=3.0
Q ss_pred ccceeeec
Q 001172 584 VPSVVMYG 591 (1133)
Q Consensus 584 ~~~~~~~g 591 (1133)
+|+-=|.|
T Consensus 216 lp~d~mkg 223 (520)
T PRK12704 216 LPNDEMKG 223 (520)
T ss_pred cCCchhhc
Confidence 44333433
No 242
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=31.80 E-value=81 Score=38.98 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=9.5
Q ss_pred CCccC-CEEEEEEEE
Q 001172 176 GFKDG-DTLIIKAQV 189 (1133)
Q Consensus 176 GFLvD-DsLTIeCdV 189 (1133)
.||.. |+|.|+|--
T Consensus 289 ~~Le~~~~IFiRA~~ 303 (591)
T KOG2505|consen 289 KYLEKADLIFIRAPA 303 (591)
T ss_pred HHHccCCeEEEEccc
Confidence 46654 888888753
No 243
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=31.79 E-value=1.3e+02 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=12.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 396 AHIFSNKIEVAYQEAVALKRQEELIREEE 424 (1133)
Q Consensus 396 ~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E 424 (1133)
+.||= -=|--+++.+.|.+=++++.
T Consensus 26 gYiLl----RPY~~kl~~k~~~kq~eke~ 50 (140)
T PF07543_consen 26 GYILL----RPYFRKLAAKDQKKQLEKEK 50 (140)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 66663 23334555555555444443
No 244
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=31.75 E-value=4.8e+02 Score=27.38 Aligned_cols=9 Identities=33% Similarity=0.124 Sum_probs=5.8
Q ss_pred HHHHhhhhh
Q 001172 392 IFVLAHIFS 400 (1133)
Q Consensus 392 ifa~~k~F~ 400 (1133)
=++||+.++
T Consensus 26 DgaLA~~LQ 34 (132)
T PF15295_consen 26 DGALAHRLQ 34 (132)
T ss_pred hHHHHHHHH
Confidence 346677776
No 245
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=31.74 E-value=30 Score=46.01 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.4
Q ss_pred cccCCchhhhhhhhcccccccccccccc
Q 001172 973 VDEFPHLDIINDLLDDEHGVGMAAGAST 1000 (1133)
Q Consensus 973 ~dEFPHLDIINDLL~eeq~~g~~~~~~~ 1000 (1133)
.-|||||- --|||--|-+.|-|+..++
T Consensus 1931 s~~y~~~~-~~~l~h~e~~~g~~~~~~s 1957 (2131)
T KOG4369|consen 1931 SNLYNHLA-AQLLTHQESSTGAPGPTSS 1957 (2131)
T ss_pred cccchhHH-HHHHHhhhccCCCCCCCCC
Confidence 35889985 4688888888887777555
No 246
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=31.50 E-value=1.9e+02 Score=34.81 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=10.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 001172 390 VEIFVLAHIFSNKIEVAYQEAVAL 413 (1133)
Q Consensus 390 ~~ifa~~k~F~~rv~~Ay~E~~A~ 413 (1133)
|-.|.|+-.|-.-|-.--+|.||-
T Consensus 34 frqwlltavlpnsind~r~e~fas 57 (510)
T PF04747_consen 34 FRQWLLTAVLPNSINDKRKEAFAS 57 (510)
T ss_pred HHHHHHHHhccccccHHHHHHhhh
Confidence 333444444444444444555553
No 247
>KOG2484 consensus GTPase [General function prediction only]
Probab=31.38 E-value=41 Score=40.47 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=10.1
Q ss_pred CCCcccCCCccceeeecCc
Q 001172 575 SSSTCSTDSVPSVVMYGPY 593 (1133)
Q Consensus 575 ~sstcs~ds~~~~~~~g~~ 593 (1133)
.+|.|.+-+.-+- +.|.|
T Consensus 226 ~~s~c~gae~l~~-~lgny 243 (435)
T KOG2484|consen 226 QSSVCFGAETLMK-VLGNY 243 (435)
T ss_pred ccchhhhHHHHHH-HhcCc
Confidence 4677776664422 45555
No 248
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=31.07 E-value=1.2e+02 Score=30.57 Aligned_cols=37 Identities=41% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHH
Q 001172 417 EELIREEEAAWLAESEQKAKR--GAAEKEKKAKKKLAKQ 453 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~e~~~kk--~~k~kekk~~~k~ak~ 453 (1133)
++++.++++.-+++.+++|.| +|..+|=||+++-|.+
T Consensus 17 ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~ 55 (109)
T PHA02571 17 EELLSELQARNEAEAEKKAAKILKKNRREIKRLKKHAEE 55 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 249
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=30.84 E-value=58 Score=40.77 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001172 440 AEKEKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 440 k~kekk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
++||++.-++.||+||-.+||+|++...+
T Consensus 1030 ~~ke~~~s~~r~k~~~i~k~e~er~qr~r 1058 (1077)
T COG5192 1030 EEKERMESLQRAKEEEIGKKEKEREQRIR 1058 (1077)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56666666666677776666666554443
No 250
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=30.66 E-value=25 Score=39.12 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.2
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCH
Q 001172 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQ 256 (1133)
Q Consensus 215 PpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~ 256 (1133)
|+.|+|.|| ||+.+||...+...||.+++....
T Consensus 1 Gl~N~GntC---------y~NsvLQ~L~~~~~f~~~~~~~~~ 33 (305)
T cd02657 1 GLTNLGNTC---------YLNSTLQCLRSVPELRDALKNYNP 33 (305)
T ss_pred Ccccccchh---------HHHHHHHHHhCCHHHHHHHHhccc
Confidence 467999999 999999999998889888766543
No 251
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=30.52 E-value=2.7e+02 Score=33.64 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=7.2
Q ss_pred cccCCCCCCCCCCC
Q 001172 603 NQKSPSRGKNQRGK 616 (1133)
Q Consensus 603 ~~~s~~rg~~~~~~ 616 (1133)
-|--|-.-||..+|
T Consensus 250 q~a~p~~kk~kk~k 263 (510)
T PF04747_consen 250 QQAAPQEKKNKKNK 263 (510)
T ss_pred hhcCcchhhccccc
Confidence 34445555565554
No 252
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=30.45 E-value=3.2e+02 Score=27.72 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001172 413 LKRQEELIREEEAAWLA 429 (1133)
Q Consensus 413 ~~rQ~~Ll~E~E~e~~~ 429 (1133)
.+.|+++|.|-.++.++
T Consensus 27 kEe~~~~i~eAr~eare 43 (108)
T COG2811 27 KEEAEQIIKEAREEARE 43 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555544444333
No 253
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=30.25 E-value=3.8e+02 Score=32.81 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHH-HH
Q 001172 383 TELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA---------AEKEKKAKKKL-AK 452 (1133)
Q Consensus 383 ~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~---------k~kekk~~~k~-ak 452 (1133)
.|.-.+--++++-..-.++|+..--.|- +.||++.|.|-|.=.-..+.-+++|+. ++.|-...+|| ++
T Consensus 334 Lea~NKRhdlLaK~~e~Eekl~E~nee~--~~r~ee~~a~dea~~e~~~a~eAekqa~~eE~L~k~~eqEa~ienkq~~~ 411 (672)
T KOG4722|consen 334 LEADNKRHDLLAKDAEVEEKLLEKNEEF--LNRFEEFLAEDEAFFEIFEAFEAEKQAFFEEFLDKFFEQEACIENKQLAD 411 (672)
T ss_pred HHHhhhHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhHHHHHHhhhhhhhhhccc
Q 001172 453 QKRNNRKGKEKKREERSSMALSDRLEDE 480 (1133)
Q Consensus 453 ~~e~~rk~~e~~~ee~~~~~~~~~~~~~ 480 (1133)
|+.+.-+.+||+++..++.|+.-..+.|
T Consensus 412 EkARedaa~EkA~dkeEq~AA~TAaq~e 439 (672)
T KOG4722|consen 412 EKAREDAAEEKAADKEEQEAAATAAQAE 439 (672)
T ss_pred HHhhhhHHHHHhhhhHHHHHHHHHHHHH
No 254
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=29.98 E-value=2.6e+02 Score=34.88 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=16.4
Q ss_pred cCCCCCCCCCcc-ccccCCCCCCCCccccC
Q 001172 494 AQPLPEKPDVLE-DVSDVSDSVDGGAEVLQ 522 (1133)
Q Consensus 494 ~~~~~~k~d~~e-~~sd~sd~~d~~~e~~~ 522 (1133)
+|..+.|.--+- -||-|.|-|.--+-.++
T Consensus 369 ~~k~~~k~~~~~~~vskid~rleqyt~a~~ 398 (492)
T PF02029_consen 369 IQKSSVKKSHPPAVVSKIDDRLEQYTSAIE 398 (492)
T ss_pred HhhcCCcccCCCcccccchhhHHHHHHHhh
Confidence 444444543333 57777777766665555
No 255
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=29.87 E-value=21 Score=45.96 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=39.1
Q ss_pred cchhhhhhhhhhhcchh---hhhhhHHHHHHhhcccc-------cccccc-------------cccccccccccCCCCCC
Q 001172 266 KTDAILKVVVKHFFIEK---EVTSTLVMDSLYSGLKA-------LEGQSK-------------SKKTKAKLLDAEDTPPP 322 (1133)
Q Consensus 266 ~sDVilkV~~k~Ff~~k---eVtSplvmd~L~~glk~-------le~~t~-------------~~k~~~~~~~t~e~p~~ 322 (1133)
..||+|.|++..|.+|| ++||+.|-+-|....+. +|+.+. -|.-++.+||||-+-.|
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P 637 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSP 637 (1267)
T ss_pred cceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCC
Confidence 38999999999999999 66999777655554444 222221 13445778899865444
No 256
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=29.82 E-value=2.3e+02 Score=30.08 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001172 442 KEKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 442 kekk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
+||++-++++++-+++.|+.|+++|+.
T Consensus 80 ~~~~~~~~e~~~l~~~A~~~e~~~d~~ 106 (157)
T PF14235_consen 80 KEKARYKSEAEELEAKAKEAEAESDHA 106 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444555555555555555544
No 257
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=29.71 E-value=48 Score=39.65 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=13.3
Q ss_pred cccCCcccccCCchhhhhhhh
Q 001172 966 RQTQGVLVDEFPHLDIINDLL 986 (1133)
Q Consensus 966 ~Q~qg~v~dEFPHLDIINDLL 986 (1133)
+|--|-+.+-|-|+-.--|.|
T Consensus 443 ~~~~G~~~htfshi~~ts~V~ 463 (555)
T KOG2457|consen 443 DLFKGQAKHTFSHICVTSDVL 463 (555)
T ss_pred hhcccchhhhhhhhhhHHHHH
Confidence 555666667777766665554
No 258
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.66 E-value=5.2e+02 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=7.4
Q ss_pred HhhHHhhhHHHHHHHhhh
Q 001172 381 RLTELGRRTVEIFVLAHI 398 (1133)
Q Consensus 381 ~~~Elgrr~~~ifa~~k~ 398 (1133)
++-||+++..+.=..++.
T Consensus 1627 ~~e~lk~~~~qns~~A~~ 1644 (1758)
T KOG0994|consen 1627 RMEELKHKAAQNSAEAKQ 1644 (1758)
T ss_pred HHHHHHHHHHhccHHHHH
Confidence 333444444444433333
No 259
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=29.66 E-value=3.6e+02 Score=31.77 Aligned_cols=7 Identities=0% Similarity=0.040 Sum_probs=3.2
Q ss_pred HHHhhhc
Q 001172 236 RLIEDKA 242 (1133)
Q Consensus 236 ~LLqS~~ 242 (1133)
++|.++.
T Consensus 13 sVL~cGk 19 (357)
T PTZ00436 13 DILRCGR 19 (357)
T ss_pred HHhCCCC
Confidence 4444444
No 260
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.66 E-value=1.9e+02 Score=31.45 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=17.5
Q ss_pred HHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001172 379 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIRE 422 (1133)
Q Consensus 379 e~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E 422 (1133)
.-.|.|+|+...... +.....|++++.. +++||++
T Consensus 116 ~N~C~e~~~~~~~~~-------~~~~~~~~~G~~~--r~~~i~~ 150 (176)
T PF12999_consen 116 PNTCAELGKEYREEL-------EEEEEIYKEGLKI--RQELIEE 150 (176)
T ss_pred ccHHHHHHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHH
Confidence 456777775544332 2334556666532 3355543
No 261
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=29.48 E-value=2.1e+02 Score=34.30 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=18.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHhhhhh
Q 001172 433 QKAKRGAAEKEKKAKKKLAKQKRN-NRKGKEKKREERSSMAL 473 (1133)
Q Consensus 433 ~~~kk~~k~kekk~~~k~ak~~e~-~rk~~e~~~ee~~~~~~ 473 (1133)
|..|=++.+|++--+++||..+.- .++++|.-+-|+..+++
T Consensus 293 r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akae 334 (428)
T KOG2668|consen 293 RETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAE 334 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhH
Confidence 344444455555555555544432 23444444444444443
No 262
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=29.31 E-value=21 Score=39.91 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=25.6
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhc
Q 001172 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLG 253 (1133)
Q Consensus 215 PpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a 253 (1133)
|+.|+|.|| ||+.+||...+...||.+++.
T Consensus 1 GL~NlGNTC---------Y~NsvLQ~L~~~~~f~~~l~~ 30 (311)
T cd02658 1 GLRNLGNSC---------YLNSVLQVLFSIPSFQWRYDD 30 (311)
T ss_pred CcccCCcch---------HHHHHHHHHHCCHHHHHHHhh
Confidence 578999999 999999999988888876543
No 263
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=28.99 E-value=40 Score=40.73 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=7.8
Q ss_pred CCEEEEEEEEEEee
Q 001172 180 GDTLIIKAQVQVIR 193 (1133)
Q Consensus 180 DDsLTIeCdVtVIk 193 (1133)
---+.++-+|-|+.
T Consensus 231 PePIlLk~hVLVM~ 244 (520)
T KOG2270|consen 231 PEPILLKNHVLVME 244 (520)
T ss_pred CCceeeecceEeee
Confidence 34555666666654
No 264
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=28.88 E-value=57 Score=41.30 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhh
Q 001172 441 EKEKKAKKKLAKQKRNNRKGKEKKREERSSMA 472 (1133)
Q Consensus 441 ~kekk~~~k~ak~~e~~rk~~e~~~ee~~~~~ 472 (1133)
+.+||.++|+.|+++|+.|+++++.++....+
T Consensus 584 ~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~ 615 (700)
T KOG1156|consen 584 DEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEA 615 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44666777777777777777776665544433
No 265
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=28.72 E-value=6.4e+02 Score=25.68 Aligned_cols=14 Identities=0% Similarity=0.081 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 001172 402 KIEVAYQEAVALKR 415 (1133)
Q Consensus 402 rv~~Ay~E~~A~~r 415 (1133)
.....+.+.+....
T Consensus 71 ~fl~~L~~~i~~q~ 84 (146)
T PRK07720 71 QFVTNLERTIDHYQ 84 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554443
No 266
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=28.55 E-value=20 Score=39.43 Aligned_cols=89 Identities=18% Similarity=0.085 Sum_probs=52.5
Q ss_pred cchhhhhhh---hhhhcchhhh---hhhHHHHHHhh----ccccccccc-ccccccccccccCCCCCCceEeecceeeeh
Q 001172 266 KTDAILKVV---VKHFFIEKEV---TSTLVMDSLYS----GLKALEGQS-KSKKTKAKLLDAEDTPPPIVHVENDMFVLV 334 (1133)
Q Consensus 266 ~sDVilkV~---~k~Ff~~keV---tSplvmd~L~~----glk~le~~t-~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~ 334 (1133)
.+|+.||++ .|+--+||=| |+-..-=+--+ ...++..+. .-+..++|.|||||+.-.+ .|.| .
T Consensus 66 fSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~----dD~~--L 139 (280)
T KOG4591|consen 66 FSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKE----DDEF--L 139 (280)
T ss_pred ccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccCHHHHHHhheeeecccccccc----chHH--H
Confidence 589999999 6888889955 44311100000 111222221 0155678999999975222 2222 3
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCcccccc
Q 001172 335 DDVLLLLERAALEPLPPKDEKGPQNRTKE 363 (1133)
Q Consensus 335 ~Dll~~leR~al~~Lp~~d~~~~q~~~~~ 363 (1133)
-.|+.++.|+.|+-|+. -|.+.+-.-
T Consensus 140 ~el~e~An~FqLe~Lke---~C~k~l~a~ 165 (280)
T KOG4591|consen 140 LELCELANRFQLELLKE---RCEKGLGAL 165 (280)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhH
Confidence 46778999999999976 466655443
No 267
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.53 E-value=2.5e+02 Score=31.46 Aligned_cols=8 Identities=38% Similarity=0.293 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 001172 336 DVLLLLER 343 (1133)
Q Consensus 336 Dll~~leR 343 (1133)
+++.++=|
T Consensus 88 ~~~~~l~r 95 (216)
T KOG1962|consen 88 HLLEALFR 95 (216)
T ss_pred HHHHHHHH
Confidence 33333333
No 268
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=7.3e+02 Score=28.30 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=4.9
Q ss_pred cCCCCccCCCcc
Q 001172 553 VCNLSSVPNGVT 564 (1133)
Q Consensus 553 ~~~~~~~~n~~~ 564 (1133)
+.++-+..|.+.
T Consensus 207 L~gl~~a~s~vr 218 (246)
T KOG4657|consen 207 LQGLTSAISAVR 218 (246)
T ss_pred cccHHHHHHHhh
Confidence 344444444433
No 269
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=28.11 E-value=2.4e+02 Score=28.66 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001172 443 EKKAKKKLAKQKRNNRKGKEKKREER 468 (1133)
Q Consensus 443 ekk~~~k~ak~~e~~rk~~e~~~ee~ 468 (1133)
.|-++-||||++-.+.-++=++..|+
T Consensus 28 ~r~~RLKqAK~EA~~EI~~yr~~kE~ 53 (113)
T TIGR01147 28 RKTKRLKQAKEEAQKEVEKYKQQREK 53 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666555544443333333
No 270
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=27.69 E-value=3.6e+02 Score=34.10 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=3.4
Q ss_pred hhcccCCch
Q 001172 476 RLEDENPSD 484 (1133)
Q Consensus 476 ~~~~~~~~~ 484 (1133)
-+.++.+.+
T Consensus 680 M~ve~eRr~ 688 (940)
T KOG4661|consen 680 MKVEEERRD 688 (940)
T ss_pred HHHHHhhcc
Confidence 333333333
No 271
>PLN02850 aspartate-tRNA ligase
Probab=27.45 E-value=52 Score=40.81 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=12.7
Q ss_pred CCCC-CCCCCcccccccchh
Q 001172 889 RIDP-NSVQSAFPFSMVTRD 907 (1133)
Q Consensus 889 r~~~-~s~~~gf~~g~~~~e 907 (1133)
|++. ...+|=-.|-|.-.|
T Consensus 302 RaE~s~t~RHl~EFt~Le~E 321 (530)
T PLN02850 302 RAEDSFTHRHLCEFTGLDLE 321 (530)
T ss_pred ccCCCCCCccchhhccchhh
Confidence 7776 466776677766665
No 272
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=27.41 E-value=1e+02 Score=38.88 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=7.1
Q ss_pred CCCCCccccCCCCCC
Q 001172 513 SVDGGAEVLQPDSED 527 (1133)
Q Consensus 513 ~~d~~~e~~~~d~ed 527 (1133)
.-||..|+-..+.||
T Consensus 733 ~~~g~k~~~~~~~eD 747 (758)
T KOG0343|consen 733 AADGIKEVSNSSVED 747 (758)
T ss_pred ccccccccCCcchhh
Confidence 345666663333333
No 273
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=27.38 E-value=20 Score=40.61 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=27.7
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccC
Q 001172 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGID 255 (1133)
Q Consensus 215 PpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~ 255 (1133)
|+.|+|.|| ||+.+||...+...||.+++...
T Consensus 1 GL~NlGnTC---------Y~NsvLQ~L~~~~~fr~~~l~~~ 32 (324)
T cd02668 1 GLKNLGATC---------YVNSFLQLWFMNLEFRKAVYECN 32 (324)
T ss_pred CcccCCcee---------HHHHHHHHHHCCHHHHHHHHccC
Confidence 568999999 99999999999889988776554
No 274
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=27.34 E-value=1.2e+02 Score=32.27 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 001172 417 EELIREE 423 (1133)
Q Consensus 417 ~~Ll~E~ 423 (1133)
+++|+|-
T Consensus 20 ~~il~~A 26 (198)
T PRK03963 20 EYILEEA 26 (198)
T ss_pred HHHHHHH
Confidence 3344333
No 275
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.26 E-value=1.1e+02 Score=38.14 Aligned_cols=6 Identities=50% Similarity=1.303 Sum_probs=3.5
Q ss_pred eEEEEE
Q 001172 95 YKWYIL 100 (1133)
Q Consensus 95 hkWRI~ 100 (1133)
..|+++
T Consensus 56 v~wY~C 61 (586)
T KOG2007|consen 56 VTWYIC 61 (586)
T ss_pred EEEEEe
Confidence 566654
No 276
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=3.9e+02 Score=29.51 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.4
Q ss_pred HHHHHH
Q 001172 404 EVAYQE 409 (1133)
Q Consensus 404 ~~Ay~E 409 (1133)
.++|+-
T Consensus 109 daefq~ 114 (213)
T KOG4055|consen 109 DAEFQI 114 (213)
T ss_pred HHHHHH
Confidence 334443
No 277
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=27.18 E-value=2.9e+02 Score=27.93 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 399 FSNKIEVAYQEAVALKRQEELIREEEAAWL 428 (1133)
Q Consensus 399 F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~ 428 (1133)
|+.|.+.--........+.+|-+|-|++..
T Consensus 33 wekr~~~R~~~~~~K~~ekElKeEKe~er~ 62 (108)
T PF03879_consen 33 WEKRMEKRLELKAIKEKEKELKEEKEAERQ 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333344444444455554444433
No 278
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=26.71 E-value=70 Score=38.57 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=5.7
Q ss_pred ccEEEEEEccc
Q 001172 67 YGKYTWRIEKF 77 (1133)
Q Consensus 67 tGshtwkIdNF 77 (1133)
.|+..|++.++
T Consensus 11 ~GY~lf~~~~~ 21 (498)
T KOG2573|consen 11 TGYGLFKVKEQ 21 (498)
T ss_pred CceeEEEEech
Confidence 45555555553
No 279
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=26.53 E-value=4.7e+02 Score=24.97 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=5.9
Q ss_pred hHHhhhHHHHHH
Q 001172 383 TELGRRTVEIFV 394 (1133)
Q Consensus 383 ~Elgrr~~~ifa 394 (1133)
.-+||...-++.
T Consensus 12 IkfGRysaL~lG 23 (81)
T KOG4326|consen 12 IKFGRYSALSLG 23 (81)
T ss_pred HHhhHHHHHHHH
Confidence 345665544443
No 280
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.50 E-value=56 Score=36.02 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhcc
Q 001172 442 KEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 479 (1133)
Q Consensus 442 kekk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~~~ 479 (1133)
++=++.||++||=.++.+|+.|+.++++-+..++++.|
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qme 109 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 281
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=26.23 E-value=1.6e+02 Score=30.82 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 001172 401 NKIEVAY 407 (1133)
Q Consensus 401 ~rv~~Ay 407 (1133)
+||..||
T Consensus 87 ~rIirAF 93 (135)
T PTZ00074 87 DRIVRAF 93 (135)
T ss_pred HHHHHHH
Confidence 4555444
No 282
>PHA01750 hypothetical protein
Probab=26.22 E-value=2.6e+02 Score=26.25 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=22.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001172 391 EIFVLAHIFSNKIEVAYQEAVALKRQEEL 419 (1133)
Q Consensus 391 ~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~L 419 (1133)
-+|+...++- +|+.++++++-.-.|.+|
T Consensus 17 tlFaIiqlYl-KIKq~lkdAvkeIV~~EL 44 (75)
T PHA01750 17 TLFAIIQLYL-KIKQALKDAVKEIVNSEL 44 (75)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3677777774 899999999988888776
No 283
>PRK00106 hypothetical protein; Provisional
Probab=26.17 E-value=3.1e+02 Score=34.48 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=10.5
Q ss_pred CCCCCC-CcccCCCcccccccCCCCC
Q 001172 610 GKNQRG-KSTYDGNVWATETENQPSR 634 (1133)
Q Consensus 610 g~~~~~-~~~~~~~~~~~~~~~~ps~ 634 (1133)
||.-|| |....-|+..--.|+-|..
T Consensus 242 GreGrNir~~E~~tGvdliiddtp~~ 267 (535)
T PRK00106 242 GREGRNIRTLESLTGIDVIIDDTPEV 267 (535)
T ss_pred CCCcchHHHHHHHhCceEEEcCCCCe
Confidence 444444 3333333333335555543
No 284
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.12 E-value=4.3e+02 Score=28.24 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=6.7
Q ss_pred hhhHHHHHHHhhhh
Q 001172 386 GRRTVEIFVLAHIF 399 (1133)
Q Consensus 386 grr~~~ifa~~k~F 399 (1133)
|--+|=.|++.+++
T Consensus 108 Gf~LfL~l~I~r~~ 121 (192)
T PF05529_consen 108 GFALFLSLVIRRVH 121 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 54555555544444
No 285
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=25.68 E-value=6.6e+02 Score=24.85 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 001172 402 KIEVAYQEAV 411 (1133)
Q Consensus 402 rv~~Ay~E~~ 411 (1133)
+......+.+
T Consensus 68 ~f~~~l~~~i 77 (141)
T TIGR02473 68 RFIRQLDQRI 77 (141)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 286
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=56 Score=40.54 Aligned_cols=43 Identities=28% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 390 VEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQK 434 (1133)
Q Consensus 390 ~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~ 434 (1133)
|.|-++..-|.+ ++..-.|++ ..||.+|+-+.|+|+..++|++
T Consensus 568 lg~d~~~~~f~~-~le~~~e~~-~~rqr~l~~~~eaee~~~~e~~ 610 (633)
T KOG2385|consen 568 LGIDVLSEEFRQ-TLEVQEEKY-ESRQRTLYSQKEAEEEIEQEVL 610 (633)
T ss_pred hCccccCHHHHH-HhhcCChHH-HHHHHHHHhHHhHHHHHHHHHH
Confidence 666666666743 344444554 7889999999999888877776
No 287
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.55 E-value=4.4e+02 Score=28.17 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.5
Q ss_pred HHHHHH
Q 001172 389 TVEIFV 394 (1133)
Q Consensus 389 ~~~ifa 394 (1133)
-|--|+
T Consensus 105 YIsGf~ 110 (192)
T PF05529_consen 105 YISGFA 110 (192)
T ss_pred HHHHHH
Confidence 344444
No 288
>PTZ00491 major vault protein; Provisional
Probab=25.38 E-value=2.6e+02 Score=36.85 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=37.8
Q ss_pred cccchhHH-HHHHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001172 370 FNKDSIER-DERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKA 446 (1133)
Q Consensus 370 vs~dtve~-ee~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kekk~ 446 (1133)
|++-+||+ |.+-+. .=.|-+++.+ +...+--.|.-+|+....|-|+..++|.+|-.-+.+.|+.+|.
T Consensus 633 VDvqsvEpvD~~tr~-~LqkSVqlAi---------EItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~ 700 (850)
T PTZ00491 633 VDVQSVEPVDERTRD-SLQKSVQLAI---------EITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTK 700 (850)
T ss_pred EeeeeeeecCHHHHH-HHHHHHHHhh---------hhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHH
Confidence 55666776 554433 2234444444 5555555566677777777777777766665555554444443
No 289
>PF03538 VRP1: Salmonella virulence plasmid 28.1kDa A protein; InterPro: IPR018003 This entry included insecticidal toxin complex proteins (TcaA, TccA, TcbA, TcdA) from Photorhabdus luminescens subsp. laumondii and Xenorhabdus nematophilus (Achromobacter nematophilus) [], and virulence proteins from Salmonella typhimurium that are encoded on a 90kb plasmid. P. luminescens and X. nematophilus are Gram-negative bacteria that form entomopathogenic symbioses with soil nematodes. The bacteria are found in the gut of entomopathogenic nematodes that invade and kill insects. When the nematode invades an insect host the bacteria are released into the insect haemocoel (the open circulatory system), both the bacteria and the nematode undergo multiple rounds of replication which kills the insect host. Mapping of the insecticidal toxin loci and studies on knockout mutants in P. luminescens showed that deletion of either tca or tcd loci dramatically reduced toxicity, while the double mutant tca/tcd abolished toxicity []. However the biology of toxin action is unclear as is the species range of insects the toxins are active against. S. typhimurium contains a 90kb plasmid that is associated with virulence. This plasmid encodes at least 6 genes needed by the bacterium for invading host macrophages during infection. These include the 70kDa mkaA protein [], a recognised virulence factor, and more recently described, four spv genes under the control of a regulator []. Deletion studies on the virulence plasmid have shown that an open reading frame encoding a 28kDa protein was needed for successful invasion of the host. This protein, designated mkfA [], VRP4 [] or VirA [] by different groups, is utilised by the microbe upon entry into macrophages, although the exact mechanism is unclear.
Probab=25.13 E-value=26 Score=40.92 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=32.1
Q ss_pred cccccCCchhhhhhhhccc--cc---ccccccccccccccCCCCccccccccCCC
Q 001172 971 VLVDEFPHLDIINDLLDDE--HG---VGMAAGASTVLQSLSNGPHTLNRQFSFPR 1020 (1133)
Q Consensus 971 ~v~dEFPHLDIINDLL~ee--q~---~g~~~~~~~~~~~~~~~~~~f~~~fs~~g 1020 (1133)
-|-.|-|.|||+|++|+.- .- .|.. .-.+.+.|..-+..|.+||.+|-
T Consensus 171 n~~~~vp~L~ivNevL~~~i~~~~~~~~~~--~~~v~~~La~~~~p~~LPY~~~~ 223 (325)
T PF03538_consen 171 NMNTEVPTLDIVNEVLESAIKAYLDQTGDT--RKSVYQALATARYPFTLPYHDPH 223 (325)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHhcccCCcc--hhHHHHHHHhccCCCCCCCccHH
Confidence 4677889999999999741 00 1211 11456667667777888887765
No 290
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=25.09 E-value=29 Score=36.30 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.6
Q ss_pred eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhcc
Q 001172 213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGI 254 (1133)
Q Consensus 213 ~VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~ 254 (1133)
+||+.|+|.|| ||+..||...+...||.++...
T Consensus 1 ~~Gl~N~gntC---------ylNs~lQ~L~~~~~~~~~l~~~ 33 (269)
T PF00443_consen 1 PVGLQNIGNTC---------YLNSVLQCLFHIPPFRNYLLSY 33 (269)
T ss_dssp --EESBSSSTH---------HHHHHHHHHHTSHHHHHHHHTT
T ss_pred CCCcEeCCCch---------HHhHHHHhhhhhhhhhhhhhhc
Confidence 37889999999 9999999998887888766543
No 291
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=24.93 E-value=1.8e+02 Score=33.00 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.7
Q ss_pred ccccccccCC
Q 001172 309 TKAKLLDAED 318 (1133)
Q Consensus 309 ~~~~~~~t~e 318 (1133)
++|-..|+|.
T Consensus 43 ~kL~iYDaDG 52 (243)
T PF05279_consen 43 GKLGIYDADG 52 (243)
T ss_pred hhheeeeccC
Confidence 4454445443
No 292
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.77 E-value=85 Score=38.93 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhhhhH
Q 001172 444 KKAKKKLAKQKRNNRKGKEK 463 (1133)
Q Consensus 444 kk~~~k~ak~~e~~rk~~e~ 463 (1133)
||.++|+.|+++|+++++++
T Consensus 413 Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 413 KKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 44445555554444444333
No 293
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=24.68 E-value=58 Score=40.67 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=10.8
Q ss_pred CCCCCC-CCCcccccccchh
Q 001172 889 RIDPNS-VQSAFPFSMVTRD 907 (1133)
Q Consensus 889 r~~~~s-~~~gf~~g~~~~e 907 (1133)
|++... .+|=-.|-|.-.|
T Consensus 290 RaE~s~T~RHl~EFt~Le~E 309 (550)
T PTZ00401 290 RSENSNTHRHLTEFVGLDVE 309 (550)
T ss_pred eCCCCCCCCCccchhhhhhh
Confidence 666553 4666566555554
No 294
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=24.59 E-value=7e+02 Score=25.31 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 001172 440 AEKEKKAKKKL 450 (1133)
Q Consensus 440 k~kekk~~~k~ 450 (1133)
+-|||+.....
T Consensus 113 kL~ek~~~~~~ 123 (147)
T PRK05689 113 TLQERYQTEAR 123 (147)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 295
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.45 E-value=4.5e+02 Score=32.79 Aligned_cols=6 Identities=17% Similarity=0.673 Sum_probs=2.7
Q ss_pred ccCCCC
Q 001172 628 TENQPS 633 (1133)
Q Consensus 628 ~~~~ps 633 (1133)
.|+-|.
T Consensus 240 iddtp~ 245 (514)
T TIGR03319 240 IDDTPE 245 (514)
T ss_pred EcCCCC
Confidence 444443
No 296
>KOG4043 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.45 E-value=49 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=7.6
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 001172 436 KRGAAEKEKKAKKKLAKQKR 455 (1133)
Q Consensus 436 kk~~k~kekk~~~k~ak~~e 455 (1133)
||.++.||+|+++++.+..|
T Consensus 179 KkhedDKeRKK~KeEk~~~e 198 (214)
T KOG4043|consen 179 KKHEDDKERKKEKEEKGDAE 198 (214)
T ss_pred hhhhhhHHHHHHHHHhhhhh
Confidence 33333444443333333333
No 297
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.39 E-value=6.9e+02 Score=26.80 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=24.2
Q ss_pred HHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 393 FVLAHIF----SNKIEVAYQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 393 fa~~k~F----~~rv~~Ay~E~~A~~rQ~~Ll~E~E~ 425 (1133)
.-+.++| +.-|+.||.++.-...+..+++|.|.
T Consensus 65 ~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 65 AEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3358888 67899999998766666666666554
No 298
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=24.36 E-value=2.1e+02 Score=29.94 Aligned_cols=6 Identities=33% Similarity=0.734 Sum_probs=2.4
Q ss_pred ccCCCC
Q 001172 315 DAEDTP 320 (1133)
Q Consensus 315 ~t~e~p 320 (1133)
|...||
T Consensus 7 d~~~lP 12 (132)
T PF15295_consen 7 DQSNLP 12 (132)
T ss_pred ccccCC
Confidence 333444
No 299
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=24.23 E-value=9.7e+02 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=16.3
Q ss_pred HHHHhhHHhhhHHHHHHH-hhhhhHHHHHHHHHH
Q 001172 378 DERRLTELGRRTVEIFVL-AHIFSNKIEVAYQEA 410 (1133)
Q Consensus 378 ee~~~~Elgrr~~~ifa~-~k~F~~rv~~Ay~E~ 410 (1133)
|+-+..|+..++-++-+. +.+=-+|+.+.+.|.
T Consensus 61 E~TkQ~E~~ak~~e~ea~~~q~~~e~~rv~~EE~ 94 (276)
T PF12037_consen 61 EETKQAELQAKIAEYEAAQAQAEIERQRVEAEER 94 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665442 222224455544443
No 300
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=24.12 E-value=34 Score=38.06 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=26.7
Q ss_pred cCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhc
Q 001172 215 YLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLG 253 (1133)
Q Consensus 215 PpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a 253 (1133)
|+.|+|.|| ||+..||...+...||.+++.
T Consensus 1 Gl~N~GntC---------y~NsvLQ~L~~~~~~~~~~l~ 30 (279)
T cd02667 1 GLSNLGNTC---------FFNAVMQNLSQTPALRELLSE 30 (279)
T ss_pred CCcCCCCch---------HHHHHHHHHhcCHHHHHHHHH
Confidence 567999999 999999999998889887766
No 301
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=23.93 E-value=74 Score=31.91 Aligned_cols=6 Identities=33% Similarity=0.590 Sum_probs=2.2
Q ss_pred HHhhhh
Q 001172 454 KRNNRK 459 (1133)
Q Consensus 454 ~e~~rk 459 (1133)
+|++||
T Consensus 94 ~E~~rk 99 (105)
T PF11214_consen 94 EERKRK 99 (105)
T ss_pred HHHHHH
Confidence 333333
No 302
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.83 E-value=9.6e+02 Score=26.09 Aligned_cols=19 Identities=37% Similarity=0.343 Sum_probs=8.6
Q ss_pred HHHHhhhhhHHHHHHHHHH
Q 001172 392 IFVLAHIFSNKIEVAYQEA 410 (1133)
Q Consensus 392 ifa~~k~F~~rv~~Ay~E~ 410 (1133)
+|+..+++..++..|-.++
T Consensus 18 ~~~~~~~~~~~~~~A~~~A 36 (201)
T PF12072_consen 18 YLVRKKINRKKLEQAEKEA 36 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3443444445555444443
No 303
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=23.81 E-value=4.4e+02 Score=30.15 Aligned_cols=51 Identities=25% Similarity=0.263 Sum_probs=30.7
Q ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001172 382 LTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 438 (1133)
Q Consensus 382 ~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~ 438 (1133)
+-+++=|.+.+--|..++ .+++++-++-= +.||.+|.-...++=||+.|-.
T Consensus 163 ~~~e~L~~LS~seL~~ll-~e~E~~Ir~yS-----EeLV~qLA~RDELefEKEvKN~ 213 (244)
T PF07763_consen 163 SYEEGLRQLSLSELNELL-EEMETAIREYS-----EELVQQLALRDELEFEKEVKNT 213 (244)
T ss_pred CcHHHHHhcCHHHHHHHH-HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666 46777655544 4455556555556666666553
No 304
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=23.75 E-value=1.8e+02 Score=31.55 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001172 415 RQEELIREEEAAWLAESEQ 433 (1133)
Q Consensus 415 rQ~~Ll~E~E~e~~~~~e~ 433 (1133)
||..+..|-|+.+++++|.
T Consensus 33 RlAReQkErEE~ER~ekEE 51 (171)
T PF05672_consen 33 RLAREQKEREEQERLEKEE 51 (171)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 6677777777777665543
No 305
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=23.72 E-value=8.6e+02 Score=27.90 Aligned_cols=6 Identities=17% Similarity=0.861 Sum_probs=3.0
Q ss_pred CeEEEE
Q 001172 110 NHLSLF 115 (1133)
Q Consensus 110 dyLSLY 115 (1133)
+|+++|
T Consensus 29 GHvgvY 34 (322)
T KOG2962|consen 29 GHVGVY 34 (322)
T ss_pred CceEEE
Confidence 455554
No 306
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=23.46 E-value=9.8e+02 Score=26.21 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=6.0
Q ss_pred hhHHHHHHHhhc
Q 001172 335 DDVLLLLERAAL 346 (1133)
Q Consensus 335 ~Dll~~leR~al 346 (1133)
..|...|.+++-
T Consensus 48 ~~l~~~~~~i~~ 59 (212)
T cd08045 48 SPLAKKIRKIAK 59 (212)
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 307
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=23.46 E-value=1.7e+02 Score=35.91 Aligned_cols=8 Identities=25% Similarity=0.434 Sum_probs=3.4
Q ss_pred ccccCCCC
Q 001172 518 AEVLQPDS 525 (1133)
Q Consensus 518 ~e~~~~d~ 525 (1133)
.|.+++|.
T Consensus 356 v~~i~LDi 363 (586)
T KOG2223|consen 356 VELIKLDI 363 (586)
T ss_pred hhheeech
Confidence 34444443
No 308
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.36 E-value=3e+02 Score=35.65 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=40.8
Q ss_pred CCcCCCCCCCCCCC--CCC---CC--Cccceeeccc-hhhhhhc-cccccCCCCCCCCCCCCCccccc
Q 001172 784 PNMSRPSSAPLVPG--PRP---TA--PVVSVVHTAP-LLARSVS-AAGRLGPDLAPATHGYIPQSYRN 842 (1133)
Q Consensus 784 ~~~sRPsSAP~~p~--pr~---t~--p~~s~vqt~p-lLsRS~s-a~gr~g~dpS~~~~sy~pqsYrN 842 (1133)
+.-.|++|+|+-|. |.+ |. |++.+-|+++ +-+|.+= -.+|..|-+++-+|.|+-+.-||
T Consensus 498 t~~~rtssspvmpv~lp~~s~~ty~~~~v~a~~~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~ 565 (825)
T KOG0267|consen 498 TVPERTSSSPVMPVILPQASMSTYPEPPVGASSTARTSSARILPVTFNQANNISSEEAPVTLRRQRRN 565 (825)
T ss_pred ccccccccCCccccccCCCcccccCCCCccccCcccccccccccccccccccccCcCCccccccccCC
Confidence 35679999998776 222 22 3455556644 4456666 36788888888899999888887
No 309
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=23.21 E-value=4.1e+02 Score=29.40 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHHH
Q 001172 396 AHIFSNKIEVAYQE 409 (1133)
Q Consensus 396 ~k~F~~rv~~Ay~E 409 (1133)
.+|.++.+..|=.|
T Consensus 15 dki~~eiL~eA~~e 28 (207)
T PRK01005 15 DALREETLKPAEEE 28 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 310
>PLN02381 valyl-tRNA synthetase
Probab=23.08 E-value=94 Score=41.77 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhcccCCchhhhhhh
Q 001172 429 AESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLEDENPSDEKKEFI 490 (1133)
Q Consensus 429 ~~~e~~~kk~~k~kekk~~~k~ak~~e~~rk~~e~~~ee~~~~~~~~~~~~~~~~~~~~~~~ 490 (1133)
++-|||.||.+|.|||..++-.|.+++.+.|.+.+.+. ...+...|..+.+++.+-++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (1066)
T PLN02381 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQAS--DGTNVPKKSEKKSRKRDVEDEN 75 (1066)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcccchhhhhhhhhhhcc
No 311
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=23.06 E-value=5.1e+02 Score=30.61 Aligned_cols=6 Identities=50% Similarity=0.219 Sum_probs=2.3
Q ss_pred HHHHhh
Q 001172 433 QKAKRG 438 (1133)
Q Consensus 433 ~~~kk~ 438 (1133)
.+++|.
T Consensus 159 ~eArR~ 164 (357)
T PTZ00436 159 LAAKRL 164 (357)
T ss_pred HHHHHH
Confidence 334433
No 312
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=23.01 E-value=2.7e+02 Score=37.50 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001172 407 YQEAVALKRQEELIREEEA 425 (1133)
Q Consensus 407 y~E~~A~~rQ~~Ll~E~E~ 425 (1133)
+.|+.|.++-.+|-+-|+|
T Consensus 862 fcekla~kv~~~Le~~e~E 880 (1330)
T KOG0949|consen 862 FCEKLALKVHRQLESMEME 880 (1330)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4477777777777655555
No 313
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=22.78 E-value=1.1e+03 Score=26.36 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=9.9
Q ss_pred ehhhHHHHH-HHhhcC
Q 001172 333 LVDDVLLLL-ERAALE 347 (1133)
Q Consensus 333 l~~Dll~~l-eR~al~ 347 (1133)
++.||+..+ ||+.++
T Consensus 20 ~ckel~~f~kERa~IE 35 (239)
T cd07658 20 FCKELATVLQERAELE 35 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 567777655 777666
No 314
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=22.76 E-value=4.1e+02 Score=28.32 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=5.9
Q ss_pred HHhhhHHHHHH
Q 001172 384 ELGRRTVEIFV 394 (1133)
Q Consensus 384 Elgrr~~~ifa 394 (1133)
++.++||+-|=
T Consensus 75 ~kRr~mme~~E 85 (154)
T PF14738_consen 75 EKRRKMMEEME 85 (154)
T ss_pred HHHHHHHHHHH
Confidence 45556665443
No 315
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=22.56 E-value=30 Score=41.49 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=6.0
Q ss_pred hhhhhhhcchh
Q 001172 272 KVVVKHFFIEK 282 (1133)
Q Consensus 272 kV~~k~Ff~~k 282 (1133)
..+|-+|-+|.
T Consensus 290 ElVGaRlIsha 300 (498)
T KOG2572|consen 290 ELVGARLISHA 300 (498)
T ss_pred HHHHHHHHHhh
Confidence 34455665665
No 316
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=22.55 E-value=2.7e+02 Score=30.46 Aligned_cols=6 Identities=17% Similarity=-0.130 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001172 424 EAAWLA 429 (1133)
Q Consensus 424 E~e~~~ 429 (1133)
|++.+.
T Consensus 126 e~err~ 131 (212)
T cd08045 126 EEEKRD 131 (212)
T ss_pred HHHhHH
Confidence 333333
No 317
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=22.53 E-value=98 Score=37.34 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCCCCCCCccc--cccCCCCC
Q 001172 496 PLPEKPDVLED--VSDVSDSV 514 (1133)
Q Consensus 496 ~~~~k~d~~e~--~sd~sd~~ 514 (1133)
++--|.-++|| +-|++|-+
T Consensus 524 k~kkk~~~leegF~~D~~DpR 544 (622)
T COG5638 524 KLKKKASNLEEGFVFDPKDPR 544 (622)
T ss_pred hhhhhhhccccccccCCCCcc
Confidence 45567889998 78888765
No 318
>PF08701 GN3L_Grn1: GNL3L/Grn1 putative GTPase; InterPro: IPR014813 Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA []. This family contains a potential nuclear localisation signal.
Probab=22.41 E-value=1.9e+02 Score=27.71 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001172 417 EELIREEEAAWLAESE 432 (1133)
Q Consensus 417 ~~Ll~E~E~e~~~~~e 432 (1133)
++||.|.|+..+..+|
T Consensus 45 e~iL~eie~~k~~~ee 60 (79)
T PF08701_consen 45 EEILKEIEEKKERAEE 60 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777665544433
No 319
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.27 E-value=6.4e+02 Score=30.28 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001172 403 IEVAYQEAVALKRQEE---LIREEEAAWLAESEQKAKRGAAEKEKKAKKKL 450 (1133)
Q Consensus 403 v~~Ay~E~~A~~rQ~~---Ll~E~E~e~~~~~e~~~kk~~k~kekk~~~k~ 450 (1133)
|..|+.|++-..++++ |..|.|.=+|.++|-+.=+++=+.++.++++|
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq 261 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQ 261 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH
Confidence 4555666654444432 34444554555555544444433333333333
No 320
>PTZ00491 major vault protein; Provisional
Probab=22.15 E-value=1.5e+03 Score=30.39 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=19.9
Q ss_pred hhhHHHhhHHHHHhhhccccccchhhhc
Q 001172 226 FVEERRGKLGRLIEDKARWSSFCAFWLG 253 (1133)
Q Consensus 226 fved~~~hLG~LLqS~~~~ssFRaf~~a 253 (1133)
|+.|.|++|++.+.....-..|-.|-.+
T Consensus 571 FvGd~Ck~iaSrIR~aVA~~~Fd~FHkn 598 (850)
T PTZ00491 571 FVGDACKTIASRVRAAVASEPFDEFHKN 598 (850)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHhcc
Confidence 7788999999988766655566555333
No 321
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.06 E-value=2.8e+02 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 396 AHIFSNKIEVAYQEAVALKRQEELIREE 423 (1133)
Q Consensus 396 ~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~ 423 (1133)
...| .+-+.|-.|-|+.+.|.+-|+.|
T Consensus 51 g~~f-~krE~A~E~~Y~r~~EkEqL~~L 77 (100)
T PF04568_consen 51 GGAF-GKREAAQEEQYFRKKEKEQLKKL 77 (100)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-chHHHhhHHHHHHHHHHHHHHHH
Confidence 4556 35566666666666665555544
No 322
>PLN03188 kinesin-12 family protein; Provisional
Probab=22.00 E-value=7.6e+02 Score=34.32 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=17.5
Q ss_pred HHHHhhHHhhhHHHHHHH--hhhhhH
Q 001172 378 DERRLTELGRRTVEIFVL--AHIFSN 401 (1133)
Q Consensus 378 ee~~~~Elgrr~~~ifa~--~k~F~~ 401 (1133)
-|+.|.|+=.-.+|..++ ++|++|
T Consensus 1090 ~eK~c~eel~~a~q~am~ghar~~e~ 1115 (1320)
T PLN03188 1090 TEKRCAEELKEAMQMAMEGHARMLEQ 1115 (1320)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888887775 445543
No 323
>PLN03237 DNA topoisomerase 2; Provisional
Probab=21.88 E-value=1.9e+02 Score=40.25 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=13.7
Q ss_pred hhHHHHHHHhhcCCCCC
Q 001172 335 DDVLLLLERAALEPLPP 351 (1133)
Q Consensus 335 ~Dll~~leR~al~~Lp~ 351 (1133)
.+|+..|+....++.|.
T Consensus 1060 ~~l~~~L~~~gf~~~~~ 1076 (1465)
T PLN03237 1060 ADLVEELRQKGFTPFPK 1076 (1465)
T ss_pred HHHHHHHHHcCCCccch
Confidence 48888999988888764
No 324
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.75 E-value=7.9e+02 Score=30.63 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.8
Q ss_pred HhhHHHHHh
Q 001172 231 RGKLGRLIE 239 (1133)
Q Consensus 231 ~~hLG~LLq 239 (1133)
..++..++.
T Consensus 119 ~~~~e~~~~ 127 (582)
T PF09731_consen 119 EEALEEAAK 127 (582)
T ss_pred hhhhhhhhh
Confidence 334444443
No 325
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.32 E-value=3e+02 Score=30.59 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=5.9
Q ss_pred CCCCCCccccCCCC
Q 001172 512 DSVDGGAEVLQPDS 525 (1133)
Q Consensus 512 d~~d~~~e~~~~d~ 525 (1133)
|.--+.+-+|.++.
T Consensus 121 ~~esS~~p~l~te~ 134 (217)
T KOG4709|consen 121 DLESSGAPLLGTEP 134 (217)
T ss_pred cccccccccccccC
Confidence 43334444554443
No 326
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=21.29 E-value=8.7e+02 Score=24.64 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhh
Q 001172 402 KIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSS 470 (1133)
Q Consensus 402 rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~~~e~~~kk~~k~kekk~~~k~ak~~e~~rk~~e~~~ee~~~ 470 (1133)
.+...+.+++....+.--.-+.+-+...+.=.++.+..|.=||=+.++.++......|.+.|.-+|-+.
T Consensus 71 ~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~r~EQk~~DE~a~ 139 (147)
T PRK05689 71 QFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAENKREQKQMDEFAQ 139 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444444433333322233333333333344444445555555555555555555566666666443
No 327
>PRK04654 sec-independent translocase; Provisional
Probab=21.14 E-value=6e+02 Score=28.59 Aligned_cols=38 Identities=26% Similarity=0.103 Sum_probs=22.5
Q ss_pred HHhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001172 380 RRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLA 429 (1133)
Q Consensus 380 ~~~~Elgrr~~~ifa~~k~F~~rv~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 429 (1133)
++|++++|.+-.++. +++ ..+...+++|.+|++.++.+
T Consensus 23 erLPe~aRtlGk~ir-------k~R-----~~~~~vk~El~~El~~~ELr 60 (214)
T PRK04654 23 ERLPKAARFAGLWVR-------RAR-----MQWDSVKQELERELEAEELK 60 (214)
T ss_pred hHHHHHHHHHHHHHH-------HHH-----HHHHHHHHHHHHhhhHHHHH
Confidence 466777777665544 222 12456677777777765543
No 328
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=21.05 E-value=1.8e+02 Score=36.18 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHh
Q 001172 440 AEKEKKAKKKLAKQKRNNRKGKEKKREERS 469 (1133)
Q Consensus 440 k~kekk~~~k~ak~~e~~rk~~e~~~ee~~ 469 (1133)
+.|+|+.=+|..-.+.++++++++.++.+.
T Consensus 535 s~k~~~ly~k~~~~~~rk~~e~~~l~~kkk 564 (570)
T KOG2481|consen 535 SKKERKLYQKMKFSKSRKEQEALKLKKKKK 564 (570)
T ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 777777777777666666666666665443
No 329
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=20.90 E-value=5.5e+02 Score=28.14 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=7.6
Q ss_pred cCCCCCCCCccccCCCCCC
Q 001172 509 DVSDSVDGGAEVLQPDSED 527 (1133)
Q Consensus 509 d~sd~~d~~~e~~~~d~ed 527 (1133)
.+.+.+.|.--+..+.-.|
T Consensus 112 ~~~~~~~~~~~iV~~~e~d 130 (194)
T COG1390 112 EALEKLLGGELVVYLNEKD 130 (194)
T ss_pred HHHHhcCCCCeEEEeCccc
Confidence 3444444433334433333
No 330
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=6.8e+02 Score=33.77 Aligned_cols=29 Identities=28% Similarity=0.165 Sum_probs=24.0
Q ss_pred hhhhhccccccCCCCCCCCCCCCCccccc
Q 001172 814 LARSVSAAGRLGPDLAPATHGYIPQSYRN 842 (1133)
Q Consensus 814 LsRS~sa~gr~g~dpS~~~~sy~pqsYrN 842 (1133)
..+..+++.|+|+.+-.++|-+.||+--+
T Consensus 1015 ~~~~a~~a~~~~~~~~~~~P~~~~~s~~~ 1043 (1080)
T KOG0566|consen 1015 MPSPASAATLSGPWYVISKPLAPPQSNNG 1043 (1080)
T ss_pred CCCccchhccCCCcccccCCccchhhccc
Confidence 67778888899998888899999988654
No 331
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=20.27 E-value=36 Score=38.26 Aligned_cols=48 Identities=31% Similarity=0.300 Sum_probs=29.5
Q ss_pred ccCCchhhhhhhhccccccccccccccccc--------ccCCCCccccccccCCCC
Q 001172 974 DEFPHLDIINDLLDDEHGVGMAAGASTVLQ--------SLSNGPHTLNRQFSFPRD 1021 (1133)
Q Consensus 974 dEFPHLDIINDLL~eeq~~g~~~~~~~~~~--------~~~~~~~~f~~~fs~~g~ 1021 (1133)
+-.|+||||||.|.||--+=+-+=...-+| +++++.+.+.+-|+-.+.
T Consensus 49 ~h~~YLdiIN~il~~eSeN~Kyayeg~nYHwvITdFdIsIdNsS~~lk~~fs~~k~ 104 (249)
T PF11675_consen 49 KHTKYLDIINDILRDESENIKYAYEGGNYHWVITDFDISIDNSSRYLKKKFSKNKI 104 (249)
T ss_pred cchhHHHHHHHHHhccccccceeeeCCceEEEEEeeeEEecCCCHHHHhhhcccch
Confidence 457999999999999765422221111111 356666666666766664
No 332
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.20 E-value=9.3e+02 Score=24.52 Aligned_cols=12 Identities=33% Similarity=0.166 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHH
Q 001172 439 AAEKEKKAKKKL 450 (1133)
Q Consensus 439 ~k~kekk~~~k~ 450 (1133)
.|-|||+...-.
T Consensus 112 ekLker~~~~~~ 123 (146)
T PRK07720 112 EKMKEKKQEMFA 123 (146)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 333
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=20.12 E-value=6.2e+02 Score=25.41 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=6.3
Q ss_pred ccCCCCCCCCCcc
Q 001172 493 DAQPLPEKPDVLE 505 (1133)
Q Consensus 493 ~~~~~~~k~d~~e 505 (1133)
-++.++-|+|-||
T Consensus 104 svgklahkvdlle 116 (121)
T PF10669_consen 104 SVGKLAHKVDLLE 116 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
Done!