BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001173
(1133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 599 bits (1545), Expect = e-170, Method: Compositional matrix adjust.
Identities = 393/1142 (34%), Positives = 599/1142 (52%), Gaps = 107/1142 (9%)
Query: 46 VKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-GNV--CCTE 102
V+ + C Y CG S K NC Y+ P + VQ LCP GNV CC
Sbjct: 18 VQVFSQSCVWYGECGIASGDKRYNCRYSGPPKPLPEDGYDLVQELCPGFFFGNVSLCCDV 77
Query: 103 DQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNNL 158
Q TL+ +Q + FL CP+C N +NLFCELTCSP QS F+NVT+ V V+N
Sbjct: 78 QQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQFLNVTATEDYVDPVTNQT 137
Query: 159 --TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRA 213
V ++YY+ +TF +Y +C+DV+ + N +AL + G A N +W ++ +
Sbjct: 138 KTNVKELEYYVGETFANAMYNACRDVEAPSSNEKALGLLCGREAQACNATNWIEYMFNKD 197
Query: 214 AANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC---ADGSLG-CSCGDCTSSPVCSSTAP 269
+P+TI S GM PMN + C D G CSC DC S VC
Sbjct: 198 NGQ---APFTITPIFSDLPTHGMEPMNNATKGCDESVDEVTGPCSCQDC--SIVCGPKPQ 252
Query: 270 PPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAM 329
PP + L + + Y+ + +FFG FF R R F + +
Sbjct: 253 PPPPPVPWRI----LGLDAMYVIMWSSYMAFLIVFFG-AFFAVWCYRKRYFVSE--YTPI 305
Query: 330 DGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVL 389
DG+ SV ++ LG R + + ++G + R+P V+
Sbjct: 306 DGNIAFSVN-SSDKGQAFCCDPLGAAFERG----------LRRLFAQWGAFCVRHPGCVV 354
Query: 390 SLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449
S+A ++ GL+ V T P LW PGS+A EK +FD+H PF+R+E+LI+
Sbjct: 355 FFSLAFIVACSSGLVFIRVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRMEQLIIRATN 414
Query: 450 DTTHGNLP----------SIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-- 497
+ +H P ++ + + ++Q I+ + A+Y+ ++L DIC+ PL
Sbjct: 415 NQSHIYHPYPAGADVPFGPPLSRDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSP 474
Query: 498 -GQDCATQSVLQYFKMDPKNFD----DFGGV-----EHVKYCFQHYTST-------ESCM 540
++C SVL YF+ D DF V H YC + S + C+
Sbjct: 475 YNKNCTILSVLNYFQNSHSVLDHQVGDFFFVYADYHTHFLYCVRAPASLNDASLLHDPCL 534
Query: 541 SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKD 600
F GP+ P LGG+ NY+ A+A V+T+PVNN + + + ++A AWE F+ K+
Sbjct: 535 GTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRAQAWESEFINFVKN 593
Query: 601 ELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSF 660
++ NLT++F +E SIE+EL RES +D TI+ISY +MF YIS+ LG S
Sbjct: 594 -----YKNPNLTISFMAERSIEDELNRESNSDLFTILISYAIMFLYISIALGHIKSCSRL 648
Query: 661 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHA 720
+ SK+ LG++G+++V+ SV S+G FS IGV TLI++EVIPFLVLAVGVDN+ ILV
Sbjct: 649 LVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQT 708
Query: 721 VKR-QQLE-LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
+R ++L+ L+ ++ L EV PS+ L+S SE +AF +G +PA FS+FA +AV
Sbjct: 709 YQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVHTFSLFAGMAV 768
Query: 779 LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG-QRKPGLLARYMK 837
L+DFLLQIT FV+L+ D R E R+D + C++ ++ G G Q L R+ K
Sbjct: 769 LIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQ------GAEDGAGVQASESCLFRFFK 822
Query: 838 EVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEH 897
+A +L ++ VI++FV SIA+ ++E GL+Q + +P DSY+ YF ++S +
Sbjct: 823 NSYAPLLLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVMDYFQSLSRY 882
Query: 898 LRIGPPLYFVV-KNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAAS 956
L GPP+YFVV + +NY+S Q N +C C+++SL+ +I A+ + + I +S
Sbjct: 883 LHAGPPVYFVVEEGHNYTSLKGQ-NMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSS 941
Query: 957 WLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDL 1016
W+DD+ WI P++ CCR + S C ++ V C C +
Sbjct: 942 WIDDYFDWIKPQS-SCCRVYN---------------STDQFCNASVVDPTCIRCRPLTSE 985
Query: 1017 LKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPL 1076
K RP F LP FL+ P+ C KGGH AY+++V++ G +G V A+ F TYHT L
Sbjct: 986 GKQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG-VGATYFMTYHTVL 1044
Query: 1077 NRQIDYVNSMRAAREFSSRVSDSLQME-----IFPYSVFYMYFEQYLDIWRTALINLAIA 1131
D++++M+ AR +S ++ ++ +E +FPYSVFY+++EQYL + + NL ++
Sbjct: 1045 QASADFIDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLTVIDDTIFNLGVS 1104
Query: 1132 IG 1133
+G
Sbjct: 1105 LG 1106
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 374/1145 (32%), Positives = 592/1145 (51%), Gaps = 127/1145 (11%)
Query: 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTI---TGNVCCTEDQFDTLR 109
C Y CG + K NC Y+ P VQ LCP + ++CC Q TL+
Sbjct: 25 CVWYGECGIATGDKRYNCKYSGPPKPLPKDGYDLVQELCPGLFFDNVSLCCDIQQLQTLK 84
Query: 110 TQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKV------SNNLTVDGI 163
+ +Q + FL CP+C N + LFCELTCSP+QS F+NVT+ N V +
Sbjct: 85 SNLQLPLQFLSRCPSCFYNLMTLFCELTCSPHQSQFLNVTATEDYFDPKTQENKTNVKEL 144
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDWFAFIGRRAAANLPGS 220
+Y++ +F +Y +C+DV+ + N +AL + G A N +W ++ + +
Sbjct: 145 EYFVGQSFANAMYNACRDVEAPSSNEKALGLLCGRDARACNATNWIEYMFNKDNGQ---A 201
Query: 221 PYTIKFWPSAPELSGMIPMNVSAYSC---ADGSLG-CSCGDCTSSPVCSSTAPPPHKSSS 276
P+TI S + GM PM + C D G CSC DC S VC
Sbjct: 202 PFTIIPVFSDLSILGMEPMRNATKGCNESVDEVTGPCSCQDC--SIVCGPKPQ--PPPPP 257
Query: 277 CSVKMGSLNAKCVDFALAILYIILVSLFFG-----WGFFHRKRERSRSF-----RMKPLV 326
++ L+A V + + Y+ + +FFG W HR+R + + V
Sbjct: 258 MPWRIWGLDAMYV--IMWVTYVAFLFVFFGALLAVWC--HRRRYFVSEYTPIDSNIAFSV 313
Query: 327 NAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPT 386
N+ D E + P+ R + K+G + RNPT
Sbjct: 314 NSSDKGEASCCD-------PLGAAFDDCLR---------------RMFTKWGAFCVRNPT 351
Query: 387 LVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILA 446
++ S+A + + GL+ +V T P +LW P S+A EK +FD H PF+R E+LI+
Sbjct: 352 CIIFFSLAFITVCSSGLVFVQVTTNPVELWSAPHSQARLEKEYFDKHFGPFFRTEQLIIQ 411
Query: 447 TIPDTTH--------GNLP--SIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKP 496
+ H ++P + + + + ++Q I+ + A+Y+ ++L DIC+ P
Sbjct: 412 APNTSVHIYEPYPAGADVPFGPPLNKEILHQVLDLQIAIESITASYNNETVTLQDICVAP 471
Query: 497 L---GQDCATQSVLQYFK-----MDPKNFDDF----GGVEHVKYCFQHYTSTES------ 538
L ++C SVL YF+ +D + DDF H YC + S
Sbjct: 472 LSPYNKNCTIMSVLNYFQNSHAVLDSQVGDDFYIYADYHTHFLYCVRAPASLNDTSLLHG 531
Query: 539 -CMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQL 597
C+ F GP+ P LGG+ NY+ A+A V+T+PVNN + + ++A AWEK F+
Sbjct: 532 PCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTERLQRAWAWEKEFISF 590
Query: 598 AKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHL 657
K+ ++ NLT++F++E SIE+EL RES +D T++ISY+VMF YISL LG
Sbjct: 591 VKN-----YKNPNLTISFTAERSIEDELNRESNSDVFTVIISYVVMFLYISLALGHIQSC 645
Query: 658 SSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCIL 717
S + SK+ LG++G+++V+ SV S+G FS +G+ TLI++EVIPFLVLAVGVDN+ IL
Sbjct: 646 SRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVIPFLVLAVGVDNIFIL 705
Query: 718 VHAVKRQQL--ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775
V +R + E L+ ++ L EV P++ L+S SE AF G+ MPA FS+FA
Sbjct: 706 VQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGALSSMPAVHTFSLFAG 765
Query: 776 LAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQR-KPGLLAR 834
+AVL+DFLLQIT FV+L+ D R E +D + C++ +D G G L R
Sbjct: 766 MAVLIDFLLQITCFVSLLGLDIKRQEKNHLDILCCVR------GADDGQGSHASESYLFR 819
Query: 835 YMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNI 894
+ K A +L ++ V+++FV S+A+ +++ GL+Q + +P DSY+ YF ++
Sbjct: 820 FFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVAVVNKVDIGLDQSLSMPNDSYVIDYFKSL 879
Query: 895 SEHLRIGPPLYFVV-KNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP 953
+++L GPP+YFV+ + YNYSS Q N +C CD++SL+ +I A+ + + +
Sbjct: 880 AQYLHSGPPVYFVLEEGYNYSSRKGQ-NMVCGGMGCDNDSLVQQIFNAAELDTYTRVGFA 938
Query: 954 AASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHH 1013
+SW+DD+ W+SP++ CCR + C ++ + C C
Sbjct: 939 PSSWIDDYFDWVSPQS-SCCRLYN---------------VTHQFCNASVMDPTCVRCRPL 982
Query: 1014 SDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYH 1073
+ K RP +F + LP FL+ P+ C KGGH AY ++V++ G ++ + A+ F TYH
Sbjct: 983 TPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVG-DDTYIGATYFMTYH 1041
Query: 1074 TPLNRQIDYVNSMRAAREFSSRVSDSLQ-----MEIFPYSVFYMYFEQYLDIWRTALINL 1128
T L DY ++M+ AR +S ++++++ +FPYSVFY+++EQYL I + NL
Sbjct: 1042 TILKTSADYTDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYLTIIDDTIFNL 1101
Query: 1129 AIAIG 1133
++++G
Sbjct: 1102 SVSLG 1106
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 585 bits (1508), Expect = e-166, Method: Compositional matrix adjust.
Identities = 388/1148 (33%), Positives = 583/1148 (50%), Gaps = 132/1148 (11%)
Query: 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-GNV--CCTEDQFDTLR 109
C Y CG K NC Y+ P VQ LCP GNV CC Q TL+
Sbjct: 25 CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSLCCDVRQLQTLK 84
Query: 110 TQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNN--LTVDGI 163
+Q + FL CP+C N LNLFCELTCSP QS F+NVT+ V V+N V +
Sbjct: 85 DNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKEL 144
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRAAANLPGS 220
YY+ +F +Y +C+DV+ + N +AL + G A N +W ++ + +
Sbjct: 145 QYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACNATNWIEYMFNKDNGQ---A 201
Query: 221 PYTIKFWPSAPELSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSS 276
P+TI S + GM PMN + C + + CSC DC S VC PP +
Sbjct: 202 PFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDC--SIVCGPKPQPPPPPAP 259
Query: 277 CSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSF--RMKPL-------VN 327
++ L + + I Y+ + +FFG FF R R F P+ VN
Sbjct: 260 WTI----LGLDAMYVIMWITYMAFLLVFFG-AFFAVWCYRKRYFVSEYTPIDSNIAFSVN 314
Query: 328 AMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTL 387
A D E + P+ +G + + ++G + RNP
Sbjct: 315 ASDKGEASCCD-------PVSAAF---------------EGCLRRLFTRWGSFCVRNPGC 352
Query: 388 VLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILAT 447
V+ S+ + GL+ V T P LW P S+A EK +FD H PF+R E+LI+
Sbjct: 353 VIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRA 412
Query: 448 IPDTTHGNLPSIVTES-------NIKLL---FEIQKKIDGLRANYSGSMISLTDICMKPL 497
H P +I++L ++Q I+ + A+Y ++L DIC+ PL
Sbjct: 413 PLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPL 472
Query: 498 ---GQDCATQSVLQYFK-----MDPKNFDDF----GGVEHVKYCFQHYTST-------ES 538
+C SVL YF+ +D K DDF H YC + S +
Sbjct: 473 SPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDP 532
Query: 539 CMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLA 598
C+ F GP+ P LGG+ NY+ A+A V+T+PVNN + + + ++A AWEK F+
Sbjct: 533 CLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRAQAWEKEFINFV 591
Query: 599 KDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLS 658
K+ ++ NLT++F++E SIE+EL RES +D T+VISY +MF YISL LG
Sbjct: 592 KN-----YKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCR 646
Query: 659 SFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV 718
+ SKV LG++G+++V+ SV S+G FS IG+ TLI++EVIPFLVLAVGVDN+ ILV
Sbjct: 647 RLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILV 706
Query: 719 HAVKR-QQLE-LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAAL 776
A +R ++L+ L+ ++ L EV PS+ L+S SE +AF +G+ MPA FS+FA L
Sbjct: 707 QAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGL 766
Query: 777 AVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYM 836
AV +DFLLQIT FV+L+ D R E R+D C++ D Q L R+
Sbjct: 767 AVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVR-----GAEDGTSVQASESCLFRFF 821
Query: 837 KEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISE 896
K ++ +L ++ VI++FV SIA+ +++ GL+Q + +P DSY+ YF +IS+
Sbjct: 822 KNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQ 881
Query: 897 HLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAAS 956
+L GPP+YFV++ + + S+ N +C C+++SL+ +I A+ + + I +S
Sbjct: 882 YLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSS 941
Query: 957 WLDDFLVWISPEAFGCCR------KFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTC 1010
W+DD+ W+ P++ CCR +F N S P C C
Sbjct: 942 WIDDYFDWVKPQS-SCCRVDNITDQFCNASVVDP---------------------ACVRC 979
Query: 1011 FHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFR 1070
+ K RP F LP FL+ P+ C KGGH AY+++V++ V A+ F
Sbjct: 980 RPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFM 1039
Query: 1071 TYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM-----EIFPYSVFYMYFEQYLDIWRTAL 1125
TYHT L D++++++ AR +S V++++ + +FPYSVFY+++EQYL I +
Sbjct: 1040 TYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTI 1099
Query: 1126 INLAIAIG 1133
NL +++G
Sbjct: 1100 FNLGVSLG 1107
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 378/1155 (32%), Positives = 568/1155 (49%), Gaps = 132/1155 (11%)
Query: 47 KHVEEFCAMYDICGARSDRK-------VLNCPYNIPSVKPDDLLSSKVQSLCPTI----- 94
KH C Y+ CG + ++C N P+ + +Q +CP +
Sbjct: 26 KHEAGVCTFYEECGKNPELSGGLTSLSNVSCLSNTPARHVTGEHLALLQRICPRLYNGPN 85
Query: 95 TGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSK- 153
T CC+ Q +L + + L CPAC NF++L C TCSP+QSLFINVT V +
Sbjct: 86 TTFACCSTKQLLSLESSMSITKALLTRCPACSDNFVSLHCHNTCSPDQSLFINVTRVVER 145
Query: 154 -VSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----GGGAQNFKDWFAF 208
V + + +F + YESC V+ + A+ + G N + W F
Sbjct: 146 GAGEPPAVVAYEAFYQRSFAEKAYESCSQVRIPAAASLAVGSMCGVYGSALCNAQRWLNF 205
Query: 209 IGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC----ADGSLGCSCGDCTSS-PV 263
G P P G+ P+N C D S CSC DC +S PV
Sbjct: 206 QGDTGNGLAPLDITFHLLEPGQALPDGIQPLNGKIAPCNESQGDDSAVCSCQDCAASCPV 265
Query: 264 CSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMK 323
PP ++ S MG + AL I++ + L R R S R K
Sbjct: 266 I-----PPPEALRPSFYMGRMPGW---LALIIIFTAVFVLLSAV----LVRLRVVSNRNK 313
Query: 324 PLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVAR 383
N +G Q+ LP + ++ +P T + F++ +G VA
Sbjct: 314 ---NKAEGP-------QEAPKLPHKHKL--SPHT-----------ILGRFFQNWGTRVAS 350
Query: 384 NPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEEL 443
P VL+LS +V+ L GL E+ T P +LW P S+A +EK F D H PF+R ++
Sbjct: 351 WPLTVLALSFIVVIALAAGLTFIELTTDPVELWSAPKSQARKEKSFHDEHFGPFFRTNQI 410
Query: 444 ILATIPDTTHG---------NLPSIVTESNIKLLFEIQKKIDGLR--ANYSGSMISLTDI 492
+ +++ N I++ + L E+Q+++ L+ + + ISL DI
Sbjct: 411 FVTARNRSSYKYDSLLLGSKNFSGILSLDFLLELLELQERLRHLQVWSPEAERNISLQDI 470
Query: 493 CMKPLG------QDCATQSVLQYFK------MDPKNFDDFGGV------EHVKYC----- 529
C PL DC S+LQYF+ M N G +H YC
Sbjct: 471 CYAPLNPYNTSLSDCCVNSLLQYFQNNRTLLMLTANQTLNGQTSLVDWKDHFLYCANAPL 530
Query: 530 -FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKA 587
F+ TS SCM+ + P+ P A+GG+ G +YSEA A ++T+ +NN + +A
Sbjct: 531 TFKDGTSLALSCMADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNN-YPADDPRMAQA 589
Query: 588 VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYI 647
WE+AF L + E S +AFS+E S+E+E+ R + D +SY+++F YI
Sbjct: 590 KLWEEAF--LKEMESFQRNTSDKFQVAFSAERSLEDEINRTTIQDLPVFAVSYIIVFLYI 647
Query: 648 SLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVL 707
SL LG S + SK LGL GV++V+ +VL ++GF+S +GV S+L+I++V+PFLVL
Sbjct: 648 SLALGSYSRCSRVAVESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVVPFLVL 707
Query: 708 AVGVDNMCILVHAVKRQQLELPLETR---ISNALVEVGPSITLASLSEVLAFAVGSFIPM 764
AVG DN+ I V +R +P E R I L V PS+ L SLSE + F +G+ PM
Sbjct: 708 AVGADNIFIFVLEYQRLP-RMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGALTPM 766
Query: 765 PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGI 824
PA R F++ + LA++LDFLLQ+TAFVAL+ D R E R D + C ++
Sbjct: 767 PAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDVLCC------FSTRKLPP 820
Query: 825 GQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRD 884
+ K GLL R+ ++++A L ++ V+ LF+ A++ L I GL+Q++ LP+D
Sbjct: 821 PKEKEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQELALPKD 880
Query: 885 SYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASL 943
SYL YF ++ +L +GPP+YFV + +N+SSE+ N CS + C S SL +I AS
Sbjct: 881 SYLIDYFLFLNRYLEVGPPVYFVTTSGFNFSSEAGM-NATCSSAGCKSFSLTQKIQYASE 939
Query: 944 IPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 1003
P SY+A A+SW+DDF+ W++P + CCR + G P D+ CPS +S
Sbjct: 940 FPDQSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRG---PHKDE--FCPSTDTSFNCLKN 993
Query: 1004 CKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGI 1063
C + T L RP+ QF + LPWFLN P+ C KGG AY SV+L +G
Sbjct: 994 CMNRT-------LGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGLAAYRTSVNLS--SDGQ 1044
Query: 1064 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ--------MEIFPYSVFYMYFE 1115
V AS F YH PL D+ ++RA+R ++ ++ L+ E+FPY++ ++++
Sbjct: 1045 VIASQFMAYHKPLRNSQDFTEALRASRLLAANITADLRKVPGTDPNFEVFPYTISNVFYQ 1104
Query: 1116 QYLDIWRTALINLAI 1130
QYL + + LA+
Sbjct: 1105 QYLTVLPEGIFTLAL 1119
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust.
Identities = 383/1179 (32%), Positives = 576/1179 (48%), Gaps = 153/1179 (12%)
Query: 48 HVEEFCAMYDICGARSDRK-------VLNCPYNIPSVKPDDLLSSKVQSLCPTI-TG--- 96
H +CA YD CG + ++C N P+ K +Q +CP + TG
Sbjct: 28 HQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNT 87
Query: 97 NVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSN 156
CC+ Q +L + L CPAC NF+NL C TCSPNQSLFINVT V+++
Sbjct: 88 QACCSAKQLVSLEASLSITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGA 147
Query: 157 NL--TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----GGGAQNFKDWFAFIG 210
V + + +F + Y+SC V+ T A+ + G N + W F G
Sbjct: 148 GQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNAQRWLNFQG 207
Query: 211 RRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC----ADGSLGCSCGDCTSSPVCSS 266
P P SG+ P+N C D CSC DC +S C +
Sbjct: 208 DTGNGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAAS--CPA 265
Query: 267 TAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLV 326
A P ++ + +G + V L IIL S+F FR+ P
Sbjct: 266 IARP--QALDSTFYLGQMPGSLV------LIIILCSVFAVVTILLV------GFRVAP-- 309
Query: 327 NAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPT 386
A D S++ V+ +K +L +++ S + F++ +G WVA P
Sbjct: 310 -ARDKSKM--VDPKKGTSL------------SDKLSFS-THTLLGQFFQGWGTWVASWPL 353
Query: 387 LVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILA 446
+L LS+ V+ L GL+ E+ T P +LW P S+A EK F D H PF+R ++IL
Sbjct: 354 TILVLSVIPVVALAAGLVFTELTTDPVELWSAPNSQARSEKAFHDQHFGPFFRTNQVIL- 412
Query: 447 TIPDTTH----------GNLPSIVTESNIKLLFEIQKKIDGLR--ANYSGSMISLTDICM 494
T P+ + N I+ + L E+Q+++ L+ + + ISL DIC
Sbjct: 413 TAPNRSSYRYDSLLLGPKNFSGILDLDLLLELLELQERLRHLQVWSPEAQRNISLQDICY 472
Query: 495 KPLGQD------CATQSVLQYFKMD------PKNFDDFGGV------EHVKYC------F 530
PL D C S+LQYF+ + N G +H YC F
Sbjct: 473 APLNPDNTSLYDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDWKDHFLYCANAPLTF 532
Query: 531 QHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVA 589
+ T+ SCM+ + P+ P A+GG+ G +YSEA A ++T+ +NN + +A
Sbjct: 533 KDGTALALSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMTFSLNNYPAGD-PRLAQAKL 591
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISL 649
WE+AF++ + M +T F +E S+E+E+ R + D SY+V+F YISL
Sbjct: 592 WEEAFLEEMRAFQRRMAGMFQVT--FMAERSLEDEINRTTAEDLPIFATSYIVIFLYISL 649
Query: 650 TLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAV 709
LG S + SK LGL GV +V+ +V+ ++GFFS +G++S+L+I++V+PFLVL+V
Sbjct: 650 ALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSV 709
Query: 710 GVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767
G DN+ I V +R ++ P E I AL V PS+ L SLSE + F +G+ PMPA
Sbjct: 710 GADNIFIFVLEYQRLPRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAV 769
Query: 768 RVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQR 827
R F++ + LAV+LDFLLQ++AFVAL+ D R E R+D C+K G G+
Sbjct: 770 RTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVKPQEL---PPPGQGE- 825
Query: 828 KPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYL 887
GLL + ++ +A L W + V+ LF+A S+ I GL+Q++ LP+DSYL
Sbjct: 826 --GLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDSYL 883
Query: 888 QGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQ 946
YF ++ + +G P+YFV YN+SSE+ N +CS + C++ S +I A+ P+
Sbjct: 884 LDYFLFLNRYFEVGAPVYFVTTLGYNFSSEAGM-NAICSSAGCNNFSFTQKIQYATEFPE 942
Query: 947 SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKD 1006
SY+A PA+SW+DDF+ W++P + CCR + +G P D+ CP S+ S K+
Sbjct: 943 QSYLAIPASSWVDDFIDWLTPSS--CCRLYISG---PNKDK--FCP---STVNSLNCLKN 992
Query: 1007 CTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG-------- 1058
C + S RPS QF + LPWFLN P+ C KGG AY+ SV+L
Sbjct: 993 CMSITMGS----VRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVNLTSDGQVLDTV 1048
Query: 1059 -------YENGIVQA----------SSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ 1101
+G + A S F YH PL DY ++RAARE ++ ++ L+
Sbjct: 1049 AILSPRLEYSGTISAHCNLYLLDSTSRFMAYHKPLKNSQDYTEALRAARELAANITADLR 1108
Query: 1102 --------MEIFPYSVFYMYFEQYLDIWRTALINLAIAI 1132
E+FPY++ +++EQYL I L L++ +
Sbjct: 1109 KVPGTDPAFEVFPYTITNVFYEQYLTILPEGLFMLSLCL 1147
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust.
Identities = 372/1168 (31%), Positives = 571/1168 (48%), Gaps = 141/1168 (12%)
Query: 40 NSVAGEV---KHVEEFCAMYDICGARSDRK-------VLNCPYNIPS--VKPDDLLSSKV 87
NS GE+ H FC Y+ CG + ++C N P+ V D L + +
Sbjct: 16 NSAQGELYTPTHKAGFCTFYEECGKNPELSGGLTSLSNISCLSNTPARHVTGDHL--ALL 73
Query: 88 QSLCPTITGN-----VCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQ 142
Q +CP + CC+ Q +L + + L CPAC NF+++ C TCSP+Q
Sbjct: 74 QRVCPRLYNGPNDTYACCSTKQLVSLDSSLSITKALLTRCPACSENFVSIHCHNTCSPDQ 133
Query: 143 SLFINVTSVSKVSNNL--TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----G 196
SLFINVT V + V + + +F + YESC V+ + A+ + G
Sbjct: 134 SLFINVTRVVQRDPGQLPAVVAYEAFYQRSFAEKAYESCSRVRIPAAASLAVGSMCGVYG 193
Query: 197 GGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC----ADGSLG 252
N + W F G P P GM P++ C + S
Sbjct: 194 SALCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQALADGMKPLDGKITPCNESQGEDSAA 253
Query: 253 CSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHR 312
CSC DC +S C PPP S MG + + II+ + F
Sbjct: 254 CSCQDCAAS--CPVIPPPPALRPS--FYMGRMPGW-------LALIIIFTAVFVLLSVVL 302
Query: 313 KRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSN 372
R S R K N GS Q+ NLP + + +P T +
Sbjct: 303 VYLRVASNRNK---NKTAGS-------QEAPNLPRKRRF--SPHT-----------VLGR 339
Query: 373 FYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDS 432
F+ +G VA P VL+LS +V+ L +GL E+ T P +LW P S+A +EK F D
Sbjct: 340 FFESWGTRVASWPLTVLALSFIVVIALSVGLTFIELTTDPVELWSAPKSQARKEKAFHDE 399
Query: 433 HLAPFYRIEELILATIPDTTHG---------NLPSIVTESNIKLLFEIQKKIDGLR--AN 481
H PF+R ++ + +++ N I++ ++ L E+Q+++ L+ ++
Sbjct: 400 HFGPFFRTNQIFVTAKNRSSYKYDSLLLGPKNFSGILSLDLLQELLELQERLRHLQVWSH 459
Query: 482 YSGSMISLTDICMKPLG------QDCATQSVLQYFKMD--------------PKNFDDFG 521
+ ISL DIC PL DC S+LQYF+ + + D+
Sbjct: 460 EAQRNISLQDICYAPLNPHNTSLTDCCVNSLLQYFQNNHTLLLLTANQTLNGQTSLVDWK 519
Query: 522 GVEHVKYC------FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVN 574
+H YC ++ T+ SC++ + P+ P A+GG+ G +YSEA A ++T+ +N
Sbjct: 520 --DHFLYCANAPLTYKDGTALALSCIADYGAPVFPFLAVGGYQGTDYSEAEALIITFSIN 577
Query: 575 NAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAI 634
N + A WE+AF L + + + +AFS+E S+E+E+ R + D
Sbjct: 578 N-YPADDPRMAHAKLWEEAF--LKEMQSFQRSTADKFQIAFSAERSLEDEINRTTIQDLP 634
Query: 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694
ISYL++F YISL LG S + SK LGL GV +V+ +V+ ++GF+S +GV S
Sbjct: 635 VFAISYLIVFLYISLALGSYSRWSRVAVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPS 694
Query: 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETR---ISNALVEVGPSITLASLS 751
+L+I++V+PFLVLAVG DN+ I V +R +P E R I L V PS+ L SLS
Sbjct: 695 SLVIIQVVPFLVLAVGADNIFIFVLEYQRLP-RMPGEQREAHIGRTLGSVAPSMLLCSLS 753
Query: 752 EVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
E + F +G+ MPA R F++ + LA++ DFLLQ+TAFVAL+ D R E R D + C
Sbjct: 754 EAICFFLGALTSMPAVRTFALTSGLAIIFDFLLQMTAFVALLSLDSKRQEASRPDVVCC- 812
Query: 812 KLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRI 871
++ + ++K GLL + ++++ L ++ V+ LF+ A++ L I
Sbjct: 813 -----FSSRNLPPPKQKEGLLLCFFRKIYTPFLLHRFIRPVVLLLFLVLFGANLYLMCNI 867
Query: 872 EPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYF-VVKNYNYSSESRQTNQLCSISQCD 930
GL+Q + LP+DSYL YF ++ +L +GPP+YF YN+S+E+ N +CS + C+
Sbjct: 868 SVGLDQDLALPKDSYLIDYFLFLNRYLEVGPPVYFDTTSGYNFSTEAGM-NAICSSAGCE 926
Query: 931 SNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPC 990
S SL +I AS P SY+A A+SW+DDF+ W++P + CCR +T G P D+
Sbjct: 927 SFSLTQKIQYASEFPNQSYVAIAASSWVDDFIDWLTPSS-SCCRIYTRG---PHKDE--F 980
Query: 991 CPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAY 1050
CPS +S C + T L RP+T QF + LPWFLN P+ C KGG AY
Sbjct: 981 CPSTDTSFNCLKNCMNRT-------LGPVRPTTEQFHKYLPWFLNDTPNIRCPKGGLAAY 1033
Query: 1051 TNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ--------M 1102
SV+L +G + AS F YH PL D+ ++RA+R ++ ++ L+
Sbjct: 1034 RTSVNLS--SDGQIIASQFMAYHKPLRNSQDFTEALRASRLLAANITAELRKVPGTDPNF 1091
Query: 1103 EIFPYSVFYMYFEQYLDIWRTALINLAI 1130
E+FPY++ ++++QYL + + LA+
Sbjct: 1092 EVFPYTISNVFYQQYLTVLPEGIFTLAL 1119
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 314/1088 (28%), Positives = 514/1088 (47%), Gaps = 139/1088 (12%)
Query: 53 CAMYDICGARSD-RKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGN-------VCCTEDQ 104
CAMY CG +S L CP +P +LS + L + G CCT+DQ
Sbjct: 23 CAMYGNCGKKSVFGNELPCP--VPRSFEPPVLSDETSKLLVEVCGEEWKEVRYACCTKDQ 80
Query: 105 FDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNL-TVDGI 163
LR +Q+A P + CPACL+NF NLFC TC+ +Q F+N+T V K + V +
Sbjct: 81 VVALRDNLQKAQPLISSCPACLKNFNNLFCHFTCAADQGRFVNITKVEKSKEDKDIVAEL 140
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYT 223
D ++ ++ Y+SCK++KF N A+D IGGGA+N+ + F+G A L GSP+
Sbjct: 141 DVFMNSSWASEFYDSCKNIKFSATNGYAMDLIGGGAKNYSQFLKFLGD-AKPMLGGSPFQ 199
Query: 224 IKF-WPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMG 282
I + + A E N Y+C D C+C DC S C P K C K+G
Sbjct: 200 INYKYDLANEEKEWQEFNDEVYACDDAQYKCACSDCQES--CPHLKP--LKDGVC--KVG 253
Query: 283 SLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSF---RMKPLVNAMDGSELHSVER 339
L C ++ I Y I F W + ++++ + P ++D SE + E
Sbjct: 254 PL--PCFSLSVLIFYTICALFAFMWYYLCKRKKNGAMIVDDDIVPESGSLDESETNVFES 311
Query: 340 QKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLL 399
E + G ++N + K G++ NP +L ++ + +
Sbjct: 312 FNNET-------------------NFFNGKLANLFTKVGQFSVENPYKILITTVFSIFVF 352
Query: 400 CLGLIRF-EVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPS 458
+ ++ +ET P LWV S +EK +FD + PFYR E++ +
Sbjct: 353 SFIIFQYATLETDPINLWVSKNSEKFKEKEYFDDNFGPFYRTEQIFVV-------NETGP 405
Query: 459 IVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQD-CATQSVLQYFKMDPKNF 517
+++ + F+++ I S I D+C +P C +S QYF+ N
Sbjct: 406 VLSYETLHWWFDVENFIT--EELQSSENIGYQDLCFRPTEDSTCVIESFTQYFQGALPNK 463
Query: 518 DDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAV 577
D + ++ C + + C+ F+ PL + FS ++ A AFVVT + N
Sbjct: 464 DSWK--RELQECGKFPVN---CLPTFQQPLKTNLL---FSDDDILNAHAFVVTLLLTN-- 513
Query: 578 DREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIV 637
T+ A WE+ + D +P + L ++F++E S+E+EL + D T+
Sbjct: 514 -----HTQSANRWEERLEEYLLDLKVP----EGLRISFNTEISLEKELNNNN--DISTVA 562
Query: 638 ISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 697
ISYL+MF Y + L +++LLG+SG+++V+ S++ + GF + G+KSTLI
Sbjct: 563 ISYLMMFLYATWALRRKDG------KTRLLLGISGLLIVLASIVCAAGFLTLFGLKSTLI 616
Query: 698 IMEVIPFLVLAVGVDNMCILVHAVKR---QQLELPLETRISNALVEVGPSITLASLSEVL 754
I EVIPFL+LA+G+DN+ ++ H R Q+ E ++ +I +A+ + PSI ++ L +
Sbjct: 617 IAEVIPFLILAIGIDNIFLITHEYDRNCEQKPEYSIDQKIISAIGRMSPSILMSLLCQTG 676
Query: 755 AFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS 814
F + +F+ MPA F++++ ++V+ + +LQ+TA+V+++ R+ K++
Sbjct: 677 CFLIAAFVTMPAVHNFAIYSTVSVIFNGVLQLTAYVSILSLYEKRSNYKQI--------- 727
Query: 815 SSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPG 874
G + K L + + K +I +F A+ S+ I+ G
Sbjct: 728 -------TGNEETKESFLKTFY-------FKMLTQKRLIIIIFSAWFFTSLVFLPEIQFG 773
Query: 875 LEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSL 934
L+Q + +P+DSYL YF ++ L +GPP+Y VVKN + + Q + C+ +SL
Sbjct: 774 LDQTLAVPQDSYLVDYFKDVYSFLNVGPPVYMVVKNLDLTKRQNQQKICGKFTTCERDSL 833
Query: 935 LNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTNGSYCPPDDQPPCCPS 993
N + + S I +P A+WLDD+ ++++P+ CCR K CPP PS
Sbjct: 834 ANVLEQER---HRSTITEPLANWLDDYFMFLNPQNDQCCRLKKGTDEVCPPS-----FPS 885
Query: 994 GQSSCGSAGVCKDCTTCFHHSDL---LKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAY 1050
+ C TCF + P F E L ++NA PS C GG Y
Sbjct: 886 -----------RRCETCFQQGSWNYNMSGFPEGKDFMEYLSIWINA-PSDPCPLGGRAPY 933
Query: 1051 TNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL-QMEIFPYSV 1109
+ ++ Y V AS FRT H PL Q D++ + R+S S ++++F YS
Sbjct: 934 STAL---VYNETSVSASVFRTAHHPLRSQKDFIQAYSDG----VRISSSFPELDMFAYSP 986
Query: 1110 FYMYFEQY 1117
FY++F QY
Sbjct: 987 FYIFFVQY 994
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1
PE=1 SV=2
Length = 1383
Score = 332 bits (852), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 287/1171 (24%), Positives = 503/1171 (42%), Gaps = 133/1171 (11%)
Query: 47 KHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSS-----KVQSLCPTI-TGN--V 98
H + C M +C ++ C N +V+P + K+ CP + TG+ +
Sbjct: 16 HHGDAGCIMRGLCQKHTENAYGPCVTNDTNVEPTAFDKTHPAYEKMVEFCPHLLTGDNKL 75
Query: 99 CCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNN- 157
CCT Q + L Q+ QA L CP+C NF L+CE TCSPNQ F++++ + +
Sbjct: 76 CCTPSQAEGLTKQIAQARHILGRCPSCFDNFAKLWCEFTCSPNQQDFVSISEMKPIEKKE 135
Query: 158 ----------LTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQ-NFKDWF 206
V+ ++Y ++ F +G++ SCKDV FG AL + +W
Sbjct: 136 GFTPEYQPAEAYVNTVEYRLSTDFAEGMFSSCKDVTFG--GQPALRVMCTSTPCTLTNWL 193
Query: 207 AFIG-RRAAANLPGSPYTIKFWP-SAPELSGMIPMNVSAYSCAD----GSLGCSCGDCTS 260
FIG + N+P + + P P MNV+ C G CS +C
Sbjct: 194 EFIGTQNLDLNIPIHTKFLLYDPIKTPPSDRSTYMNVNFTGCDKSARVGWPACSTSECNK 253
Query: 261 SPVCSSTAPPPHKSS--SCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSR 318
+ K+S +C+V C++ + + +I +++ GF +
Sbjct: 254 EEYANLIDLDDGKTSGQTCNVH----GIACLNIFVMLAFIGSLAVLLCVGFVFTSYDE-- 307
Query: 319 SFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLS--IVQGYMSNFYRK 376
D + L + +E +P+ RNRI+ + + +M N R
Sbjct: 308 -----------DYTNLRQTQSGEE-----------SPK-RNRIKRTGAWIHNFMENNARD 344
Query: 377 YGKWVARNPTLVLSLSMALVLLLCL-GLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLA 435
G RNP + A VL+ CL G+I + T +W P SRA +E++ F+++
Sbjct: 345 IGMMAGRNPKSHFFIGCA-VLIFCLPGMIYHKESTNVVDMWSSPRSRARQEEMVFNANFG 403
Query: 436 PFYRIEELILATIPD-TTHGNLPSIVTESNI-KLLFEIQKKIDGLRANYS-GSMISLTDI 492
R ++++L + D + G L V +I + LF+I I + S G I+L D+
Sbjct: 404 RPQRYQQIMLLSHRDFQSSGKLYGPVFHKDIFEELFDILNAIKNISTQDSDGRTITLDDV 463
Query: 493 CMKPL--GQDCATQSVLQYFK-----------------MDPKNFDDFGG-------VEHV 526
C +P+ G DC S YF+ D FD F + H+
Sbjct: 464 CYRPMGPGYDCLIMSPTNYFQGNKEHLDMKSNKEETVSEDDDAFDYFSSEATTDEWMNHM 523
Query: 527 KYCF-----QHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREG 581
C Q S SCM + GP P+ G + N+ A++ ++T V R
Sbjct: 524 AACIDQPMSQKTKSGLSCMGTYGGPSAPNMVFGK-NSTNHQAANSIMMTILVTQ---RTE 579
Query: 582 NETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 641
E +KA WEK F++ K+ +S + +F +E SI +E++ ++ + +T+VI+
Sbjct: 580 PEIQKAELWEKEFLKFCKEY---REKSPKVIFSFMAERSITDEIENDAKDEIVTVVIALA 636
Query: 642 VMFAYISLTLGD----TPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 697
+ Y++ +LG L S + S++ LG+ V++ +LS S G FS G+
Sbjct: 637 FLIGYVTFSLGRYFVCENQLWSILVHSRICLGMLSVIINLLSSFCSWGIFSMFGIHPVKN 696
Query: 698 IMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETR------ISNALVEVGPSITLASLS 751
+ V F+V +GV ++V +Q++ +P + + + P++ +SL
Sbjct: 697 ALVVQFFVVTLLGVCRTFMVVKYYAQQRVSMPYMSPDQCPEIVGMVMAGTMPAMFSSSLG 756
Query: 752 EVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
+F +G F +PA R F ++A LAVL+D +L T F+AL V+D R + + +
Sbjct: 757 CAFSFFIGGFTDLPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDTQRELNGKPEFFFPY 816
Query: 812 KLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRI 871
++ G + + ++ A L +I +F+A + ++ L ++I
Sbjct: 817 QIKDLLGAYLIGRQRATDTFMTQFFHFQVAPFLMHRMTRIITGIIFIASFITTVILSSKI 876
Query: 872 EPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDS 931
G +Q + SY+ +F + + +GPP++F V N+ C+ C
Sbjct: 877 SVGFDQSMAFTEKSYISTHFRYLDKFFDVGPPVFFTVDGELDWHRPDVQNKFCTFPGCSD 936
Query: 932 NSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCC 991
S N ++ A + +Y++ +W+D++L WIS ++ CC+ + + D C
Sbjct: 937 TSFGNIMNYAVGHTEQTYLSGEMYNWIDNYLEWISRKS-PCCKVYVH------DPNTFCS 989
Query: 992 PSGQSSCGSAGVCKDC------TTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKG 1045
+ S C+ C + S ++ RPS F L FL P++ C G
Sbjct: 990 TNRNKSALDDKACRTCMDFDYVANSYPKSSIMYHRPSIEVFYRHLRHFLEDTPNSECVFG 1049
Query: 1046 GHGAYTNSVDLKGYENGIVQASSFRTYHTPL--NRQIDYVNSMRAAREFSSRVSDSLQ-- 1101
G ++ +++ G +QAS F T+H L + D++ +M AR S R+ S+
Sbjct: 1050 GRASFKDAISFT--SRGRIQASQFMTFHKKLSISNSSDFIKAMDTARMVSRRLERSIDDT 1107
Query: 1102 MEIFPYSVFYMYFEQYLDIWRTALINLAIAI 1132
+F YS + ++EQY I L I +
Sbjct: 1108 AHVFAYSKIFPFYEQYSTIMPILTTQLFITV 1138
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2
PE=3 SV=2
Length = 1274
Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 279/1083 (25%), Positives = 461/1083 (42%), Gaps = 145/1083 (13%)
Query: 96 GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS 155
VCCTE Q + ++ A L CP+C NF L+C+ TCSP+QS F+ V +
Sbjct: 83 AQVCCTELQLKGMTDRISNAATILGSCPSCFDNFAKLWCQFTCSPDQSKFMKVMETTGPK 142
Query: 156 NNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIG-GGAQNFKDWFAFIGRRAA 214
N V +++ + F +GLYESC+ F N AL + GG +F++++ F+G +
Sbjct: 143 N--VVVKMEFKVNRDFVEGLYESCRHTWFA--NGLALRLMSLGGKVSFENFYGFMGTKNL 198
Query: 215 ANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKS 274
A P +F S + + IP S C DC P + K
Sbjct: 199 AQ--SIPINTEFQFSRMKNAMNIPTTPCHKSAGPKVPACGAIDC---PTNAHQLVDISKV 253
Query: 275 SSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSEL 334
K+ + ++ L I + +++ + + RS A +G +
Sbjct: 254 EHLGTKVFHPHFPDFEWLLKICGCLALTVLLVFILKYSCHRRS----------APNGEDG 303
Query: 335 HSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMA 394
V+ K NL +Q + L +Y V ++P + +SL +
Sbjct: 304 CYVDLGKG-NLEVQFEGLCA---------------------RYANAVIKHPLIFVSLGLI 341
Query: 395 LVLLLCLGLIRFEVETRP-EKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTH 453
+ C G +F T +++ G EK F S P +RIE+ I +P TT
Sbjct: 342 VAAACCSGNFKFHSLTHSVDQVSAADGETRRNEKKFIHS-FGPNHRIEQ-IFINLPPTTK 399
Query: 454 G--NLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQD--CATQSVLQY 509
N+P + +F++ I L A Y S + L DIC KP+G++ CA S Y
Sbjct: 400 SMFNMPLF------EEMFQLVGNIQNLTACYGNSSVKLDDICYKPIGKNHGCAIMSPTNY 453
Query: 510 FKMDPKNFDDFG------------GVEHVKYCFQH-----YTSTESCMSAFKGPLDPSTA 552
F+ NF++ G EH+KYC ++ S SC F GP+DP
Sbjct: 454 FQNKWTNFENAGPPTIDDEIFDDQHWEHLKYCIRNPLTVSTYSEMSCFGEFSGPIDPILV 513
Query: 553 LGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLT 612
GG S + A + + V G E +A+AWE AF+ + + + K+
Sbjct: 514 FGG-SNESIKGAEMYYTARTIMITVLIRGPE-DQAIAWETAFLNM-----MSRYEMKHAN 566
Query: 613 LAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLG--DTPHLS--SFYISSKVLL 668
F +E+S+ EE+ D I VI+ + ++ LG P S S + K+L+
Sbjct: 567 FTFMTETSVAEEIHTAVETDKIVSVIACAAVLIWVITMLGINHWPESSILSALVHHKLLI 626
Query: 669 GLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--L 726
+S V++ ++SV S+G FS GV +T + V+ F++ +G++ + +++ +
Sbjct: 627 SISAVMISVISVWCSIGMFSLFGVHATDNAIVVLFFVITCLGINRIFVIIRTFQANGHCY 686
Query: 727 ELP------LETRISNALVEVGPSITLASL-SEVLAFAVGSFIP-----MPACRVFSMFA 774
LP + RISN + P + SL F G +P MPA VF+ A
Sbjct: 687 GLPNISYREMNHRISNVMRRSIPIVLTNSLICSTCLFLAGGVLPYVSVSMPAVEVFARHA 746
Query: 775 ALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYA-----DSDKGIGQRKP 829
LA+L+D + + L +D R + + P +LS+ ++ G R P
Sbjct: 747 GLAILMDTAFYLLVMLPLFQYDARREMSGKCEIWPWYELSNESKINLCMEAVDG-NLRSP 805
Query: 830 GLLARYMKEVHATIL-----SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRD 884
+ K A +L +W +SL +A LC +E G Q +
Sbjct: 806 ---VDWFKLAIAPLLLKKICRIWIATFFFVSLIIA---CYCTLC--LEFGFNQVMAFSET 857
Query: 885 SYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLI 944
SYL +F N++E+L IGPPL+FVV+ + + N+ C+++ CD NS+ N+I +
Sbjct: 858 SYLTKHFQNMNENLNIGPPLWFVVEGDVKWHDPKMQNKFCTLAGCDDNSMGNKIRSLAYA 917
Query: 945 P--QSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAG 1002
+ +Y+ WLD +L ++ P G C K +C P + + S S+
Sbjct: 918 ENYKGNYLHGDVNIWLDSYLQFMHPR--GSCCKMDGKQFCDPSN------ATHCSSCSSS 969
Query: 1003 VCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENG 1062
TT + +F L FL PS CA GG +++L NG
Sbjct: 970 SVASLTT------------TEYEFYRNLHHFLETPPSIQCAHGGMALAKPAINLT--RNG 1015
Query: 1063 IVQASSFRTYHTPLN--RQIDYVNSMRAAREFSSRVSDSLQM---EIFPYSVFYMYFEQY 1117
+Q++ F T+ LN I ++ R A+ + + L++ +++ YS F+ Y+EQY
Sbjct: 1016 KIQSAYFSTFFKKLNLSDSIQLYDAWRFAKYLADDIERELEIPGVKVYVYSTFFPYYEQY 1075
Query: 1118 LDI 1120
L +
Sbjct: 1076 LTL 1078
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE + A AW++ +V++ + P S L F++ +++++ LK S I +
Sbjct: 374 NEDRAAAILEAWQRTYVEVVHQSVAP--NSTQKVLPFTT-TTLDDILKSFSDVSVIRVAS 430
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 431 GYLLMLAYACLTM-----LRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 485
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 756
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 486 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 545
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 546 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 600
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE K A AW++ +V++ + S L+F++ +++++ LK S I +
Sbjct: 388 NEDKAAAILEAWQRTYVEVVHQSV--AQNSTQKVLSFTT-TTLDDILKSFSDVSVIRVAS 444
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 445 GYLLMLAYACLTM-----LRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 499
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 756
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 500 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 559
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 560 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 614
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE K A AW++ +V++ + S L+F++ +++++ LK S I +
Sbjct: 388 NEDKAAAILEAWQRMYVEVVHQSVAQ--NSTQKVLSFTT-TTLDDILKSFSDVSVIRVAS 444
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 445 GYLLMLAYACLTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 499
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 756
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 500 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 559
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 560 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 614
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 8/222 (3%)
Query: 589 AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYIS 648
AW++ FVQLA+ E LP S+ + AFSS +++++ L+ S +V YL+M AY
Sbjct: 354 AWQRRFVQLAQ-EALPANASQQIH-AFSS-TTLDDILRAFSEVSTTRVVGGYLLMLAYAC 410
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+T+ L S+ +GL+GV+LV L+V +G + +G+ +V+PFL L
Sbjct: 411 VTM-----LRWDCAQSQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALG 465
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+GVD++ +L HA + + PL R+ L G S+ L S++ ++AF + + +P+PA R
Sbjct: 466 IGVDDIFLLAHAFTKAPPDTPLPERMGECLRSTGTSVALTSVNNMVAFFMAALVPIPALR 525
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPC 810
FS+ AA+ V +F + F A++ D R +R+D + C
Sbjct: 526 AFSLQAAIVVGCNFAAVMLVFPAILSLDLRRRHRQRLDVLCC 567
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%)
Query: 589 AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYIS 648
AW++ FVQLA+ E LP S+ + AFSS +++++ L S A +V YL+M AY
Sbjct: 354 AWQRRFVQLAQ-EALPENASQQIH-AFSS-TTLDDILHAFSEVSAARVVGGYLLMLAYAC 410
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+T+ L S+ +GL+GV+LV L+V +G + +G+ +V+PFL L
Sbjct: 411 VTM-----LRWDCAQSQGSVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALG 465
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+GVD++ +L HA PL+ R+ L G S+ L S++ + AF + + +P+PA R
Sbjct: 466 IGVDDVFLLAHAFTEALPGTPLQERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALR 525
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPC 810
FS+ AA+ V F+ + F A++ D R +R+D + C
Sbjct: 526 AFSLQAAIVVGCTFVAVMLVFPAILSLDLRRRHCQRLDVLCC 567
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 131/245 (53%), Gaps = 8/245 (3%)
Query: 567 FVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELK 626
F Y +++ E T +W++ FV++ + P S N+ AFS+ +++ + +K
Sbjct: 359 FKDDYEIHDINWNEDKATAILESWQRKFVEVVHGSI-PQNSSSNV-YAFST-TTLNDIMK 415
Query: 627 RESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686
S I + YL+M AY +T+ L S+ +GL+GV+LV LSV +G
Sbjct: 416 SFSDVSVIRVAGGYLLMLAYACVTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGL 470
Query: 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 746
S +G+ +V+P L L +GVD+M +L H+ + +P + R + L G S+
Sbjct: 471 CSLLGLSFNAATTQVLPSLALGIGVDDMFLLGHSFTETRSNIPFKERTGDCLRRTGTSVA 530
Query: 747 LASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVD 806
L S++ ++AF + + +P+PA R FS+ AA+ V+ +F + + F A++ D R EDKR+D
Sbjct: 531 LTSVNNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAMALLIFPAILSLDLHRREDKRLD 590
Query: 807 CIPCL 811
+ C
Sbjct: 591 ILCCF 595
>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1
SV=1
Length = 906
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 142/638 (22%), Positives = 264/638 (41%), Gaps = 89/638 (13%)
Query: 343 ENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLG 402
E LP Q PR R + ++ +S ++++G V NP L L L L G
Sbjct: 56 ERLPPLGQEAPPPR---RCHTNCLEAPLSRGFQRFGATVGANPWLFLLGPALLTASLGTG 112
Query: 403 LIRFEVETRP-EKLWVGPGSRAAEEKLFFDSHLAP--FYRIE------ELILATIPDTTH 453
LI E E+ + GS A E+ F H + YR E A+I +
Sbjct: 113 LIFLPKEKENLEEQYTPIGSPAKAERRFVQGHFSTNDTYRFSASRTSSETNFASILVVSL 172
Query: 454 GNLPSIVTESNIKLLFEIQKKIDGLRA-NYSGSMISLTDICMKPLGQDCATQSVLQYFKM 512
N S++ K + ++ + + L+ +G+ I ++C K C
Sbjct: 173 AN--SLLEPEIFKEVSKLDQAVQALKVVQENGTQILYQEVCAK-YKTLCV---------- 219
Query: 513 DPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTA--LGGFSGNN---------- 560
P N + + +QH +S F P+ L GF G N
Sbjct: 220 -PPN--------PLLFSWQHNSSLNLSDLTFPIHNTPTQLIYLAGFFGGNVLGQMTGKSQ 270
Query: 561 -YSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSES 619
E+ A + Y + + +++++ AW F+ D + + + FSS S
Sbjct: 271 RLVESRAMRLLYYLKT---EDPEDSERSQAWLTHFLDHFNDMKSSLTLEEIEVVYFSSLS 327
Query: 620 -SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVML 678
+E E ++ + +++FA +S + D I +K+ + + GV V +
Sbjct: 328 RQLEFEATSKTVIPLFHLAYILIILFAVVSCSRLDC-------IRNKMCVAVFGVFSVAM 380
Query: 679 SVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNAL 738
SV+ G +GV +I+ PFL+L VGVD+M I++ A ++ L + R+SN+
Sbjct: 381 SVVSGFGLMLHLGVPFVIIVANS-PFLILGVGVDDMFIMISAWQKTSLSESIRERLSNSY 439
Query: 739 VEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFD-- 796
+V SIT+ +++ VLAF G + + F ++ +L + IT F A++ D
Sbjct: 440 SKVAVSITITTITNVLAFYTGITSSFRSVQYFCIYTGTTLLFCYFYSITCFGAVMALDGK 499
Query: 797 -------FLRAEDKRVD------CIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATI 843
+L D++ C+P L + + + + + ++
Sbjct: 500 REVAWSRWLEKPDQKYSSLKKSCCVPFGSLIDKHGEDNHPMN--------LFFRDYFGPF 551
Query: 844 LSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGP 902
L+ K V+ L++ + ++SI C +++ GL+ + + DSY+ YFN ++ GP
Sbjct: 552 LTTSKAKFIVVLLYIFYIISSIYGCFQVQEGLDLRNLASDDSYITPYFNVEEDYFSDYGP 611
Query: 903 PLYFVVK---NYNYSSESRQTNQLCSISQCDSNSLLNE 937
+ +V NY + ++ RQ C ++Q + N +++
Sbjct: 612 RVMVIVTESVNY-WDNDVRQKLDKC-MTQFEENEYVDK 647
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 15/231 (6%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI + +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRV---DCIPCLK 812
F +FA + ++ DF LQ+ F ++ D R E +KR+ C+P K
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLPSAK 466
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 19/242 (7%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +ES + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLGSLRARLMLLHPSPNCSL--RAESLVHVHFKEEIGVAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCLKLSSSYADSDKGI 824
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL S K +
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACLP-------SAKPV 468
Query: 825 GQ 826
GQ
Sbjct: 469 GQ 470
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +ES + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLGSLRARLMLLHPSPNCSL--RAESLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCL 811
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL
Sbjct: 416 EFCLFAVVGLVSDFFLQMPFFTTVLSIDIRRMELADLNKRLPPEACL 462
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 15/246 (6%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRV---DCIPCLKLSSSYADSD 821
F +FA + ++ DF LQ+ F ++ D R E +KR+ C+P K A +
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLPSAKPVGRPARYE 475
Query: 822 KGIGQR 827
+ + R
Sbjct: 476 RQLAVR 481
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 172/397 (43%), Gaps = 42/397 (10%)
Query: 435 APFYRIEELILATIPDTTHGNLPSI-VTESNIKLLFEIQKKIDGLRANYSGSMISLTDIC 493
AP I+++ + + H NL ++ V S + F++ ++I S SL D+C
Sbjct: 88 APVAYIQQIFVKSSVSPWHKNLLAVDVFRSPLSRAFQLVEEIRNHVLKDSSGTRSLEDVC 147
Query: 494 MKPLG--------------QDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESC 539
++ C S +++ D + F + ++ QH T
Sbjct: 148 LQVTDLLPGLRKLRNLLPEHGCLLLSPGNFWQNDRERF--HADPDIIRTIHQHEPKTLQT 205
Query: 540 MSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAK 599
+ K L G G YS S + V+ + T + F+ +
Sbjct: 206 SATLK------DLLFGVPGK-YSGVSLYTRKRLVSYTI------TLVFQHYHAKFLGSLR 252
Query: 600 DELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYISLTLGDTPHLS 658
L+ + S N +L +ES + K E A+ I +V +Y+++FAYI +
Sbjct: 253 ARLMLLHPSPNCSL--RAESLVHVHFKEEIGIAELIPLVTTYIILFAYIYFSTRKID--- 307
Query: 659 SFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV 718
+ SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L
Sbjct: 308 --MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLT 365
Query: 719 HAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
+V ++L ++ RI+ L SI +E+ +G F +PA + F +FA + +
Sbjct: 366 KSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIVLIGYFTLVPAIQEFCLFAVVGL 425
Query: 779 LLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCL 811
+ DF LQ+ F ++ D R E +KR+ CL
Sbjct: 426 VSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACL 462
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 15/246 (6%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRV---DCIPCLKLSSSYADSD 821
F +FA + ++ DF LQ+ F ++ D R E +KR+ C+P K A +
Sbjct: 416 EFCLFAVVGLVSDFFLQMFFFTTVLSIDIRRMELADLNKRLPPESCLPSAKPVGRPARYE 475
Query: 822 KGIGQR 827
+ + R
Sbjct: 476 RQLAVR 481
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 162/371 (43%), Gaps = 39/371 (10%)
Query: 589 AWEKAFVQLAKDELLPMVQSKN--LTLAFSSESSIEEELKRESTADAITIVISYLVMFAY 646
AW++ F + + + + N TL + +SI + L+ + I+ Y +M AY
Sbjct: 609 AWQRNFTKSLYNHKANVDEDGNERRTLHPLASTSIADMLEEFCQFNYTIILAGYALMLAY 668
Query: 647 ISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLV 706
+T + S + L L+GV++V + + +G + G++ +++PFL
Sbjct: 669 AIVTQARFDNCLP-ATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLT 727
Query: 707 LAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766
L +GVDNM +L+H + ++ + E G SI S++ +L+F G+ +P+PA
Sbjct: 728 LGIGVDNMFMLLHNYRDVVKLAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPA 787
Query: 767 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL--------------- 811
R F +++ + +F+ +T + A+I D R + +R D + CL
Sbjct: 788 LRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLVCCLYGDTREESYSMISKP 847
Query: 812 KLSSSY---ADSDKGIGQRKPGL---------------LARYMKEVHATILSLWGVKIAV 853
K+ S A S+ I Q+ G+ L +++ + +S K+A+
Sbjct: 848 KIQSKRIIGAPSEASIMQQFDGITQAQMASSDDPAPWSLHSFIRYYYIPFISKPASKVAI 907
Query: 854 ISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVK--NY 911
I A AS + GLE VLP + + ++ P++ V+K N
Sbjct: 908 IVGCCALLGASFIGMRQSTLGLELGDVLPEHTAPAQFLRARDKYFSFY-PMFAVIKGPNI 966
Query: 912 NYSSESRQTNQ 922
+Y+ + RQ +
Sbjct: 967 DYAHQQRQIDN 977
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 162/367 (44%), Gaps = 71/367 (19%)
Query: 574 NNAVDREGNETKKAV----AWEKAFVQLAKDELLPMVQSK---NLTLAFSSESSIEEELK 626
N V G +KA AW++ F + + E L QS+ N + S +++++ L
Sbjct: 365 NYKVHHLGWTQEKAAEVLNAWQRNFSR--EVEQLLRKQSRIATNYDIYVFSSAALDDILA 422
Query: 627 RESTADAITIVI--SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSV 684
+ S A++IVI + V++A+ +L P + + +G++GV+L+ S +
Sbjct: 423 KFSHPSALSIVIGVAVTVLYAFCTLLRWRDP------VRGQSSVGVAGVLLMCFSTAAGL 476
Query: 685 GFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV----KRQQLELPLETRISNALVE 740
G + +G+ +V+PFL L +GVD++ +L A +R+Q +L L+ +
Sbjct: 477 GLSALLGIVFNAASTQVVPFLALGLGVDHIFMLTAAYAESNRREQTKLILK--------K 528
Query: 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800
VGPSI ++ S +F +FIP+PA +VF + AA+ + + + F A+I D R
Sbjct: 529 VGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIVMCSNLAAALLVFPAMISLDLRRR 588
Query: 801 EDKRVD----CIPCLKLSSSYA------DSDKGIGQRKPG-------------------- 830
R D C P K A +++ G G R P
Sbjct: 589 TAGRADIFCCCFPVWKEQPKVAPPVLPLNNNNGRGARHPKSCNNNRVPLPAQNPLLEQRA 648
Query: 831 ------------LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK 878
LA + + + L VK + F+A ++S+ TR++ GL+
Sbjct: 649 DIPGSSHSLASFSLATFAFQHYTPFLMRSWVKFLTVMGFLAALISSLYASTRLQDGLDII 708
Query: 879 IVLPRDS 885
++P+DS
Sbjct: 709 DLVPKDS 715
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 13/212 (6%)
Query: 616 SSESSIEEELKRE-STADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVV 674
+S+ + K E A+ I +V +Y+++FAYI + + SK L L+ VV
Sbjct: 265 ASQHIVHVHFKEEIGIAELIPLVTTYIILFAYIYFSTRKID-----LVKSKWGLALAAVV 319
Query: 675 LVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRI 734
V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V ++L ++ RI
Sbjct: 320 TVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSVVSTPVDLEVKLRI 379
Query: 735 SNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIV 794
+ L I +E+ +G F +PA + F +FA + ++ DF LQ+ F ++
Sbjct: 380 AQGLRNESWFIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQMFFFTTVLS 439
Query: 795 FDFLRAE----DKRVD---CIPCLKLSSSYAD 819
D R E +KR+ CIP K + D
Sbjct: 440 IDIRRMELADLNKRIPAEACIPPPKPGAKRYD 471
>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1
SV=3
Length = 767
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 134/607 (22%), Positives = 232/607 (38%), Gaps = 72/607 (11%)
Query: 356 RTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRF--EVETRPE 413
R R+R ++G +S ++ G V +P + L + L L G + + E E
Sbjct: 109 RHRHRCHTDCLEGLLSRTFQWLGWQVGAHPWIFLLAPLMLTAALGTGFLYLPKDEEEDLE 168
Query: 414 KLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLL----- 468
+ + GS A E+ F H F + + +T N S++ S L
Sbjct: 169 EHYTPVGSPAKAERRFVQGH---FTTNDSYRFSASRRSTEANFVSLLVVSYSDSLLDPAT 225
Query: 469 FEIQKKIDG----LR-ANYSGSMISLTDICMK------PLGQDCATQSVLQYFKMDPKNF 517
F K+DG LR A GS I +C + P V + + +F
Sbjct: 226 FAEVSKLDGAVQDLRVAREKGSQIQYQQVCARYRALCVPPNPILYAWQVNKTLNLSSISF 285
Query: 518 DDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAV 577
+ H Y ++ F G +LG G A A + Y +
Sbjct: 286 PAYNHGRHPLY-----------LTGFFGGYILGGSLG--MGQLLLRAKAMRLLYYLKTE- 331
Query: 578 DREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIV 637
D E + K Q L KN+ E L R+ +A ++
Sbjct: 332 DPEYDVQSK---------QWLTHLLDQFTNIKNILALKKIEVVHFTSLSRQLEFEATSVT 382
Query: 638 ISYLVMFAYISLTLGDTPHLSSFY-ISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696
+ + AYI + L F I +K+ + GV+ L+V+ G IGV +
Sbjct: 383 VIPVFHLAYILIILFAVTSCFRFDCIRNKMCVAAFGVISAFLAVVSGFGLLLHIGVPFVI 442
Query: 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAF 756
I+ PFL+L VGVD+M I++ A + L + R+SN + SIT+ +++ +LA
Sbjct: 443 IVANS-PFLILGVGVDDMFIMISAWHKTNLADDIRERMSNVYSKAAVSITITTITNILAL 501
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFD---------FLRAED----- 802
G + + F ++ + +L + IT F A + D +L+ D
Sbjct: 502 YTGIMSSFRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKREVVCLCWLKKADPKWPS 561
Query: 803 -KRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFT 861
K+ C P + + I + + ++ L+ K V+ ++V +
Sbjct: 562 FKKFCCFPFGSVPDEHGTDIHPI--------SLFFRDYFGPFLTRSESKYFVVFIYVLYI 613
Query: 862 LASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFVV-KNYNY-SSESR 918
++SI C ++ GL+ + + DSY+ YFN + GP + +V K +Y + R
Sbjct: 614 ISSIYGCFHVQEGLDLRNLASDDSYITPYFNVEENYFSDYGPRVMVIVTKKVDYWDKDVR 673
Query: 919 QTNQLCS 925
Q + C+
Sbjct: 674 QKLENCT 680
>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis elegans GN=ptr-9 PE=3
SV=2
Length = 844
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 16/196 (8%)
Query: 603 LPMVQSKNLTLAFSSESSIEEELKREST-----ADAITIVISYLVMFAYISLTLGDTPHL 657
+P + N T+ +SS S+ +E++R ++V+ MFA SL +
Sbjct: 235 IPRYKETNSTIFWSSSKSLAKEMERNGELLIPWMPWTSLVLVVFCMFACSSLNI------ 288
Query: 658 SSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCIL 717
+ S+ +G + ++ + S + L ++ ++PFLV+++G DNM ++
Sbjct: 289 ----VKSQPFIGFFAMFNATMATIASTSLLLYLQYP-FLPLVFIMPFLVVSIGTDNMFLM 343
Query: 718 VHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALA 777
+ + + + E R +AL E S+ L SL++ L+FA+GS A RVF + A+A
Sbjct: 344 LKSWRMTKKSSNEEQRYIHALTESAASLFLTSLTDGLSFAIGSISDFHAVRVFCTYCAMA 403
Query: 778 VLLDFLLQITAFVALI 793
+L FL Q+T F A++
Sbjct: 404 ILFMFLFQVTFFNAVM 419
>sp|B9EKX1|PTHD4_MOUSE Patched domain-containing protein 4 OS=Mus musculus GN=Ptchd4 PE=2
SV=2
Length = 904
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 131/616 (21%), Positives = 254/616 (41%), Gaps = 81/616 (13%)
Query: 360 RIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCL-GLIRFEVETRPEKLWVG 418
R+ +++ + +F + G V+R+P L++ L + L L RF+ E E+L V
Sbjct: 17 RMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDLERL-VA 75
Query: 419 PGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTES----NIKL----LFE 470
P A+ + S L P + + + + + T G ++ S NI L + +
Sbjct: 76 PSHSLAKIERSLASSLFPLDQSKSQLYSDLH--TPGRYGRVILLSSPGDNILLQAEGILQ 133
Query: 471 IQKKIDGLRANYSGSMISLTDIC-MKPLGQDCATQ---SVLQYFKMDPKNFDDFGGVEHV 526
+ + ++ N+ G + + +C ++ + C SVL+ + + V+ V
Sbjct: 134 THRAVMEMKVNHKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDLRQAAVSNKTTARVQ-V 192
Query: 527 KYCFQHYTSTESCMSAFKGPLDPSTALGGF------SGNNYSEASAFVVTYPVNNAVDRE 580
+Y T + ++F G LGG A A +TY +
Sbjct: 193 RYP---NTKLKDGRNSFIGH-----QLGGVVEVPNSKDQRVKSARAIQITYYLQTY---- 240
Query: 581 GNETKKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
G+ T+ + WE F +L + + ++L L + S+ + + S +++
Sbjct: 241 GSATQDLIGEKWENEFCKLMRK---LQEEHQDLQLYSLASFSLWRDFHKTSILTRSKVLV 297
Query: 639 SYLVMF--AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696
S +++ A +S ++ D + SK LGL GV+ V +S+ + G F K
Sbjct: 298 SLVLILTTATLSSSMKDC-------LRSKPFLGLLGVLTVCISIATAAGIFFITDGKYNS 350
Query: 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAF 756
++ IPF + G + L+ +R + LP + R+++A +V + T+ S + F
Sbjct: 351 TLLG-IPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITF 409
Query: 757 AVGS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKL- 813
+G+ F + A ++F +++LL++ + F + +VF + E R I C K+
Sbjct: 410 GMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVFAG-QLEQNRYHSIFCCKIP 468
Query: 814 SSSYAD-----------------SDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISL 856
S+ Y D S + + +++E + ++ VK V+ L
Sbjct: 469 SAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFVVIL 528
Query: 857 FVAFTLASIALCTRIEPGLEQKIVLPRDS-------YLQGYFNNISEHLRIGPPLYFVVK 909
++ + S C +I G +L DS Q YF+N S IG +Y ++
Sbjct: 529 YLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFSNYSP--VIGFYVYEPLE 586
Query: 910 NYNYSSESRQTNQLCS 925
+N SS +LCS
Sbjct: 587 YWN-SSVQEDLQRLCS 601
>sp|Q6ZW05|PTHD4_HUMAN Patched domain-containing protein 4 OS=Homo sapiens GN=PTCHD4 PE=2
SV=3
Length = 846
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/436 (22%), Positives = 181/436 (41%), Gaps = 68/436 (15%)
Query: 564 ASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 621
A A +TY + G+ T+ + WE F +L + + + L L + S+
Sbjct: 170 ARAIQITYYLQTY----GSATQDLIGEKWENEFCKLIRKL---QEEHQELQLYSLASFSL 222
Query: 622 EEELKRESTADAITIVISYLVMF--AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLS 679
+ + S +++S +++ A +S ++ D + SK LGL GV+ V +S
Sbjct: 223 WRDFHKTSILARSKVLVSLVLILTTATLSSSMKDC-------LRSKPFLGLLGVLTVCIS 275
Query: 680 VLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALV 739
++ + G F K ++ IPF + G + L+ +R + LP + RI++A
Sbjct: 276 IITAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGWRRTKENLPFKDRIADAYS 334
Query: 740 EVGPSITLASLSEVLAFAVGS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDF 797
+V + T+ S + F +G+ F + A +VF +++LL++ + F + +VF
Sbjct: 335 DVMVTYTMTSSLYFITFGMGASPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAG 394
Query: 798 LRAEDKRVDCIPCLKL-SSSYAD-----------------SDKGIGQRKPGLLARYMKEV 839
+ E R I C K+ S+ Y D S + + +++E
Sbjct: 395 -QLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREH 453
Query: 840 HATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDS-------YLQGYFN 892
+ ++ VK V+ L++ + S C +I G +L DS Q YF+
Sbjct: 454 YNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGANIINLLASDSPSVSYAMVQQKYFS 513
Query: 893 NISEHLRIGPPLYFVVKNYNYSSES---------------RQTNQLCSISQCDSNSLLNE 937
N S IG +Y ++ +N S + Q Q +S +N+ +
Sbjct: 514 NYSP--VIGFYVYEPLEYWNSSVQDDLRRLCSGFTAVSWVEQYYQFLKVSNVSANNKSDF 571
Query: 938 ISRASLIPQSSYIAKP 953
IS + QSS++ KP
Sbjct: 572 IS----VLQSSFLKKP 583
>sp|Q14B62|PTHD1_MOUSE Patched domain-containing protein 1 OS=Mus musculus GN=Ptchd1 PE=2
SV=2
Length = 888
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/443 (19%), Positives = 180/443 (40%), Gaps = 50/443 (11%)
Query: 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSH 433
+ + G ++A +P S + + +LL R++VE E L S A E+ +S
Sbjct: 14 FSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNLVNS- 72
Query: 434 LAPFYRIEELILATIPD--------TTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGS 485
L P R + + + + T +++ + + L+ ++ + ++ G
Sbjct: 73 LFPVNRSKHRLYSDLQTPGRYGRVIVTSYQKANMLDQHHTDLILKLHTAVTKIQVPRPGF 132
Query: 486 MISLTDICMKPLGQDCATQSVLQYFK----MDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541
+ IC+ + C ++ + N +F + Y H + +
Sbjct: 133 NYTFAHICVLNNDKTCIVDDIVHVLEELKNARATNRTNFA----ITYPITHLKDGRAVYN 188
Query: 542 AFKGPLDPSTALGG---FSGNNYSEASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQ 596
+ LGG S + A A +TY + + N VA WE +F
Sbjct: 189 GHQ--------LGGVTVHSKDRVKSAEAIQLTYYLQSI-----NSLNDMVAERWESSFCD 235
Query: 597 LAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL--VMFAYISLTLGDT 654
K L SK ++S SS+ E+ ++ S +V S + V A + ++ D
Sbjct: 236 TVK--LFQKSNSKVKIYPYTS-SSLREDFQKTSRVSERYLVTSLILVVTMAILCCSMQDC 292
Query: 655 PHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714
+ SK LGL G+V + L+ L + G + G K + V PF++L G+
Sbjct: 293 -------VRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGV-PFVMLGHGLYGT 344
Query: 715 CILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS--FIPMPACRVFSM 772
++ + ++ + + ++ R + + S +L + ++ F +G+ F + A R+F
Sbjct: 345 FEMLSSWRKTREDQHVKERTAEVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCC 404
Query: 773 FAALAVLLDFLLQITAFVALIVF 795
+ +A+L ++L ++ + + +VF
Sbjct: 405 NSCIAILFNYLYVLSFYGSSLVF 427
>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3
SV=1
Length = 897
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 110/505 (21%), Positives = 205/505 (40%), Gaps = 68/505 (13%)
Query: 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLL-CLGLIRFEVETRPEKLWVGPGSRA 423
I +G ++FY G +V+R+P L++ L ++ L RF+ ET E L V P
Sbjct: 6 IHRGLKASFYW-LGLFVSRHPVFFLTVPAVLTIIFGSTVLSRFKPETDLEIL-VAPTHSL 63
Query: 424 AE----------------EKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKL 467
A+ KL+ D H R LIL + GN+ + +
Sbjct: 64 AKIERSLANSLFPIDQSKHKLYSDLHTPG--RYGRLILLA---RSGGNILELAEQ----- 113
Query: 468 LFEIQKKIDGLRANYSGSMISLTDIC-MKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHV 526
+ ++ KK+ +R NY G + +C ++ + C ++ F+ V
Sbjct: 114 VLQVHKKVLDMRVNYKGFNYTFAHLCVLRHRDKRCLLDDIITIFEDIRLAVLSNSTFSKV 173
Query: 527 KYCFQHYTSTESCMSAFKGPLDPSTALGGFS--GNNYSEASAFVVTYPVNNAVDREGNET 584
+ + T + +S F G LGG + NN + F + + G
Sbjct: 174 PVSYPNTTLKDGRVS-FIGH-----QLGGVALPANNRDQQVKFARAIQITYYLRNLGPVV 227
Query: 585 KKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKREST--ADAITIVISY 640
+ +A WE F +L S+ L + + S+ + + + + +
Sbjct: 228 QDIIAEKWETEFCKLVHQL---ATDSQELHIQSLTSFSLWRDFHKTGVLAKSEVLVSLVL 284
Query: 641 LVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG-FFSAIG-VKSTLII 698
+++ A IS ++ D + K LGL GV+ + ++ + + G FF + G STL+
Sbjct: 285 VLLAATISSSMRDC-------LRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLL- 336
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAV 758
IPF + G + L+ +R + LP + R+++A +V T+ S ++ F +
Sbjct: 337 --GIPFFAMGHGTKGVFELLAGWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGM 394
Query: 759 GS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSS- 815
G+ F + + +VF +AVL+++ + + + +VF + E R + C K+ S
Sbjct: 395 GASPFTNIESVKVFCQSMCVAVLVNYFYVFSFYGSCLVFAG-QLEQNRYHSVFCCKIPSV 453
Query: 816 SYADSDKGIGQRKPGLLARYMKEVH 840
Y D R+P M + H
Sbjct: 454 EYLD-------RQPTWFKTMMSDGH 471
>sp|Q96NR3|PTHD1_HUMAN Patched domain-containing protein 1 OS=Homo sapiens GN=PTCHD1 PE=2
SV=2
Length = 888
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/443 (19%), Positives = 179/443 (40%), Gaps = 50/443 (11%)
Query: 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSH 433
+ + G ++A +P S + + +LL R++VE E L S A E+ +S
Sbjct: 14 FSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNLVNS- 72
Query: 434 LAPFYRIEELILATIPD--------TTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGS 485
L P R + + + + T +++ + + L+ ++ + ++ G
Sbjct: 73 LFPVNRSKHRLYSDLQTPGRYGRVIVTSFQKANMLDQHHTDLILKLHAAVTKIQVPRPGF 132
Query: 486 MISLTDICMKPLGQDCATQSVLQYFK----MDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541
+ IC+ + C ++ + N +F + Y H + +
Sbjct: 133 NYTFAHICILNNDKTCIVDDIVHVLEELKNARATNRTNFA----ITYPITHLKDGRAVYN 188
Query: 542 AFKGPLDPSTALGG---FSGNNYSEASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQ 596
+ LGG S + A A +TY + + N VA WE +F
Sbjct: 189 GHQ--------LGGVTVHSKDRVKSAEAIQLTYYLQSI-----NSLNDMVAERWESSFCD 235
Query: 597 LAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL--VMFAYISLTLGDT 654
+ L SK ++S SS+ E+ ++ S +V S + V A + ++ D
Sbjct: 236 TVR--LFQKSNSKVKMYPYTS-SSLREDFQKTSRVSERYLVTSLILVVTMAILCCSMQDC 292
Query: 655 PHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714
+ SK LGL G+V + L+ L + G + G K + V PF++L G+
Sbjct: 293 -------VRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGV-PFVMLGHGLYGT 344
Query: 715 CILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS--FIPMPACRVFSM 772
++ + ++ + + ++ R + + S +L + ++ F +G+ F + A R+F
Sbjct: 345 FEMLSSWRKTREDQHVKERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCC 404
Query: 773 FAALAVLLDFLLQITAFVALIVF 795
+ +A+ ++L ++ + + +VF
Sbjct: 405 NSCIAIFFNYLYVLSFYGSSLVF 427
>sp|Q9Y7D2|HMDH_ASPTE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus
terreus PE=3 SV=2
Length = 1048
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 166/446 (37%), Gaps = 106/446 (23%)
Query: 616 SSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSS-FYISSKVLLGLSGVV 674
SS S + T D + I +SYL M + HL S F++++ VLL
Sbjct: 206 SSWLSFLHRVHHAETVDLVIIGLSYLAMNMTVVSLFRVMRHLGSRFWLAASVLLS----- 260
Query: 675 LVMLSVLGSVGFFSAIGVKST-------LIIMEVIPFLVLAVGVDNMCILVHAV------ 721
G+ F +G+ +T L++ E IP+LVL VG + L AV
Sbjct: 261 -------GAFAFVLGLGITTTCDVPVDMLLLFEGIPYLVLTVGFEKPIQLTRAVLCVSEE 313
Query: 722 -----------------KRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-P 763
RQ +P I A+ G I + L E+ A A+G+ + P
Sbjct: 314 LWGGGQRQVPNGASSDDSRQNQLIP--NIIQLAVDREGWYIVRSYLLEIGALALGAVLRP 371
Query: 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG 823
+ F AA +L+D +L T + ++ C+KL + S G
Sbjct: 372 KDSLGHFCFLAAWTLLIDAVLLFTFYATIL----------------CVKLEITRIRSPGG 415
Query: 824 IGQ---RKP-GLLARYMKEVHATILSLWGVKIAVISLFVAFT----------LASIAL-C 868
+GQ + P G+ +K + T L V V+ F+ + +A+ L
Sbjct: 416 LGQVNAKHPSGIFGHKVKSTNITWWKLLTVGGFVLCHFLQLSPFFYRVMGEYMANGTLPP 475
Query: 869 TRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN--YNYSSESRQT------ 920
T + P E L + YL + + PPL +V+++ +N S+ R T
Sbjct: 476 TAVSPFKEAANGL-NEIYLTARVEGFETRVTVLPPLQYVLESAGFNISATKRSTFDGVLD 534
Query: 921 ------NQLCSISQCDSNSLLN----EISRASLIPQSSYIAKPAASWLDDFLVWISPEAF 970
+LC + + +LN +R PQ+ A P S+L +PE
Sbjct: 535 GLESPLGRLCLMGALVVSLVLNNHLIHAARWHAWPQARESAVPDGSYLSVPCSATAPEV- 593
Query: 971 GCCRKFTNGSYCPPDDQPPCCPSGQS 996
C R PP++ S Q+
Sbjct: 594 -CTR--------PPEETEALLKSNQA 610
>sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Drosophila
melanogaster GN=Hmgcr PE=2 SV=2
Length = 920
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 629 STADAI--TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686
+ AD I TIV V++ Y S + SK +LG++G+ V S + +
Sbjct: 103 NAADVILMTIVRCTAVLYCYYQFC-------SLHRLGSKYVLGIAGLFTVFSSFIFTTAI 155
Query: 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 746
+G + + + + FL+L + + N L + + I+ L +GP+I+
Sbjct: 156 IKFLGSDISEL-KDALFFLLLVIDLSNSGRLAQLALSGSNQAEVTQNIARGLELLGPAIS 214
Query: 747 LASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL--IVFDFLRA 800
L ++ EVL VG+ + V MFA L+VL+++++ +T + A ++FD R+
Sbjct: 215 LDTIVEVLLVGVGTLSGVQRLEVLCMFAVLSVLVNYVVFMTFYPACLSLIFDLSRS 270
>sp|A3KFU9|PTHD2_MOUSE Patched domain-containing protein 2 OS=Mus musculus GN=Ptchd2 PE=2
SV=1
Length = 1347
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 602 LLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFY 661
+L + + + + + E++R D + IS + A + + + LS F
Sbjct: 387 MLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFG 446
Query: 662 ISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV 721
I+S +GLS +V + L + G++ I+ V F+++ +GVD++ + ++
Sbjct: 447 IAS---IGLSCLVALFL-------YHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTY 496
Query: 722 KR-QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
++ LE P + R+ + + G + SL+ A+A F +PA F +F +L V
Sbjct: 497 RQATHLEDP-QLRMIHTIQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV 553
>sp|O42335|PTC1_CYNPY Protein patched homolog 1 (Fragment) OS=Cynops pyrrhogaster GN=PTC1
PE=2 SV=1
Length = 257
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE K A AW++ +V++ + P S L+F++ +++++ LK S I +
Sbjct: 151 NEDKAAAILEAWQRMYVEVVHQSV-PQ-NSTQKVLSFTT-TTLDDILKSFSDISVIRVAS 207
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGV 692
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 208 GYLLMLAYACLTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGI 256
>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2
SV=2
Length = 1392
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 602 LLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFY 661
+L + + + + + E++R D + IS + A + + + LS F
Sbjct: 432 MLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFG 491
Query: 662 ISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV 721
I+S +GLS +V + L + G++ I+ V F+++ +GVD++ + ++
Sbjct: 492 IAS---IGLSCLVALFL-------YHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTY 541
Query: 722 KR-QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
++ LE P + R+ + + G + SL+ A+A F +PA F +F +L V
Sbjct: 542 RQATHLEDP-QLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV 598
>sp|Q0C8L9|HMDH_ASPTN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_09965
PE=3 SV=1
Length = 1048
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 165/446 (36%), Gaps = 106/446 (23%)
Query: 616 SSESSIEEELKRESTADAITIVISYLVM-FAYISLTLGDTPHLSSFYISSKVLLGLSGVV 674
SS S +K T D + I +SYL M +SL S F++++ VLL
Sbjct: 206 SSWLSFLHRVKHAETVDLVIIGLSYLAMNMTVVSLFRVMRQLGSRFWLATSVLLS----- 260
Query: 675 LVMLSVLGSVGFFSAIGVKST-------LIIMEVIPFLVLAVGVDNMCILVHAV------ 721
G+ F +G+ +T L++ E IP+LVL VG + L AV
Sbjct: 261 -------GAFAFVLGLGITTTCDVPVDMLLLFEGIPYLVLTVGFEKPIQLTRAVLCVSEE 313
Query: 722 -----------------KRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-P 763
RQ +P I A+ G I + L E+ A A+G+ + P
Sbjct: 314 LRGGWQRPVPNGASSDDSRQSQLIP--NIIQLAVDREGWYIVRSYLLEIGALALGAVLRP 371
Query: 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG 823
+ F AA +L+D +L T + ++ C+KL + S G
Sbjct: 372 NDSLGHFCFLAAWTLLIDAILLFTFYATIL----------------CVKLEITRIRSPGG 415
Query: 824 IGQ---RKP-GLLARYMKEVHATILSLWGVKIAVISLFVAFT----------LASIAL-C 868
+GQ + P G+ +K + T L V V+ F+ + +A+ L
Sbjct: 416 LGQVNAKHPSGIFGHKVKSTNITWWKLLTVGGFVLCHFLQLSPFFYRVMGEYMANGTLPP 475
Query: 869 TRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN--YNYSSESRQT------ 920
T + P E L + YL + + PPL + +++ +N S+ R T
Sbjct: 476 TAVSPFKEAANGL-NEIYLTARVEGFETRVTVLPPLQYALESAGFNISATKRSTFDGVLD 534
Query: 921 ------NQLCSISQCDSNSLLN----EISRASLIPQSSYIAKPAASWLDDFLVWISPEAF 970
+LC + + +LN +R PQ+ A P S L +PE
Sbjct: 535 GLESPLGRLCLMGALVVSLVLNNHLIHAARWHAWPQARESAVPDGSSLSVPCSATAPEV- 593
Query: 971 GCCRKFTNGSYCPPDDQPPCCPSGQS 996
C R PP++ S Q+
Sbjct: 594 -CTR--------PPEETEALLKSNQA 610
>sp|A7Z064|HMDH_BOVIN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Bos taurus
GN=HMGCR PE=2 SV=2
Length = 888
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L V + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLVDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|O42334|PTC2_CYNPY Protein patched homolog 2 (Fragment) OS=Cynops pyrrhogaster GN=PTC2
PE=2 SV=1
Length = 255
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISL 649
W++ FV+LA+ S + AFS+ +++ + +K S I + YL+M AY +
Sbjct: 160 WQRKFVELAQQSAPE--NSSQIIHAFST-TTLNDIMKSFSDVSVIRVAGGYLLMLAYACV 216
Query: 650 TLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGV 692
T+ L S+ +GL+GV+LV LSV +G S +G+
Sbjct: 217 TM-----LRWDCTKSQGAVGLAGVLLVALSVASGLGLCSLLGI 254
>sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens
GN=HMGCR PE=1 SV=1
Length = 888
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKR 804
TL +L E L VG+ + + F ++VL ++ + +T F A + + + R
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESR 227
>sp|Q29512|HMDH_RABIT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Oryctolagus
cuniculus GN=HMGCR PE=3 SV=1
Length = 888
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q5R6N3|HMDH_PONAB 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pongo abelii
GN=HMGCR PE=2 SV=1
Length = 888
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|P09610|HMDH_MESAU 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mesocricetus
auratus GN=HMGCR PE=1 SV=1
Length = 887
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKR 804
TL +L E L VG+ + + F ++VL ++ + +T F A + + + R
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESR 227
>sp|Q12649|HMDH_PHYB8 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Phycomyces
blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC
33097 / NRRL 1555) GN=hmgA PE=3 SV=2
Length = 1176
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 17/192 (8%)
Query: 621 IEEELKRESTADAITIVISYLVMFA-YISLTLGDTPHLSSFYISSKVLL-GLSGVVLVML 678
++E + D I I++ Y++M A +ISL + S + +++ V+ G +L +L
Sbjct: 290 VKELIDLADNIDIIVILVGYIMMIATFISLYVNMRAMGSRYTLATAVVFNGFFSFMLALL 349
Query: 679 SVLGSVGFFSAIGVKS-TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPL-----ET 732
+V A+GV +++ E IPFL + +G + L V + E PL T
Sbjct: 350 TV-------RALGVDVYPVVLAEAIPFLAVTIGFERPFKLTKRVFQFSKETPLTKQEIRT 402
Query: 733 RISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 792
I A+ V I E++ +G+ + F + +A+ + DF++ T + A+
Sbjct: 403 TIMRAVDTVALPIARDCFMEIIVLVLGAKSGISGLEEFCLLSAILLAYDFIIMFTWYTAV 462
Query: 793 IV--FDFLRAED 802
+ + LR +
Sbjct: 463 LALKLELLRIRE 474
>sp|Q01237|HMDH_MOUSE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mus musculus
GN=Hmgcr PE=2 SV=3
Length = 887
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|P00347|HMDH_CRIGR 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus
griseus GN=HMGCR PE=1 SV=1
Length = 887
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKR 804
TL +L E L VG+ + + F ++VL ++ + +T F A + + + R
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESR 227
>sp|P51639|HMDH_RAT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Rattus
norvegicus GN=Hmgcr PE=1 SV=2
Length = 887
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKR 804
TL +L E L VG+ + + F ++VL ++ + +T F A + + + R
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESR 227
>sp|Q1W675|HMDH_PIG 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Sus scrofa
GN=HMGCR PE=2 SV=1
Length = 885
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL + + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLATYFVFMTFFPACV 216
>sp|P20715|HMDH_XENLA 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Xenopus laevis
GN=hmgcr PE=2 SV=1
Length = 883
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + S
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFVFSTVVIHF 113
Query: 690 IGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLAS 749
+ K + E +PF +L + + L + + I+ + +GP+ TL +
Sbjct: 114 LD-KELTGLNEALPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTFTLEA 172
Query: 750 LSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
L E L VG+ + + F ++VL ++ +T F A +
Sbjct: 173 LVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFAFMTFFPACV 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,277,711
Number of Sequences: 539616
Number of extensions: 16469224
Number of successful extensions: 40300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 40083
Number of HSP's gapped (non-prelim): 112
length of query: 1133
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1005
effective length of database: 122,498,611
effective search space: 123111104055
effective search space used: 123111104055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)