Query 001173
Match_columns 1133
No_of_seqs 430 out of 2158
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 17:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 2E-187 4E-192 1792.2 92.1 1025 53-1133 1-1059(1204)
2 KOG1933 Cholesterol transport 100.0 1E-162 2E-167 1498.8 47.9 1006 51-1132 1-1029(1201)
3 TIGR00918 2A060602 The Eukaryo 100.0 2E-110 4E-115 1055.6 58.2 720 365-1133 38-976 (1145)
4 PF02460 Patched: Patched fami 100.0 1.4E-76 3.1E-81 752.5 54.0 635 400-1133 2-656 (798)
5 KOG1934 Predicted membrane pro 100.0 8.7E-75 1.9E-79 715.0 54.8 666 365-1133 4-688 (868)
6 KOG1935 Membrane protein Patch 100.0 2.6E-70 5.6E-75 634.4 34.7 727 365-1131 54-927 (1143)
7 COG1033 Predicted exporters of 100.0 7.3E-35 1.6E-39 354.1 50.1 448 374-919 2-452 (727)
8 TIGR00921 2A067 The (Largely A 100.0 2.4E-33 5.2E-38 354.8 52.3 445 383-917 2-451 (719)
9 TIGR00833 actII Transport prot 100.0 9.8E-27 2.1E-31 298.9 53.9 422 383-918 1-432 (910)
10 COG1033 Predicted exporters of 100.0 7E-27 1.5E-31 284.7 37.8 359 367-800 365-725 (727)
11 PF12349 Sterol-sensing: Stero 100.0 1.4E-28 3.1E-33 250.8 14.0 152 661-812 1-152 (153)
12 TIGR00920 2A060605 3-hydroxy-3 100.0 5.6E-29 1.2E-33 299.9 12.7 168 631-805 60-228 (886)
13 TIGR00921 2A067 The (Largely A 99.9 3.1E-23 6.6E-28 262.8 39.2 352 369-795 367-719 (719)
14 TIGR03480 HpnN hopanoid biosyn 99.9 1.8E-23 3.8E-28 268.8 36.5 254 608-903 246-501 (862)
15 TIGR00833 actII Transport prot 99.9 1.1E-20 2.4E-25 243.3 33.5 179 608-799 721-906 (910)
16 PF03176 MMPL: MMPL family; I 99.9 1.2E-20 2.6E-25 217.6 29.1 194 591-800 107-306 (333)
17 COG2409 Predicted drug exporte 99.8 2.5E-17 5.3E-22 211.9 32.6 428 374-916 3-441 (937)
18 TIGR03480 HpnN hopanoid biosyn 99.7 1.4E-16 3.1E-21 205.2 26.5 158 617-793 698-856 (862)
19 PF02460 Patched: Patched fami 99.7 1E-14 2.2E-19 186.7 37.9 373 371-796 422-797 (798)
20 PRK10614 multidrug efflux syst 99.5 1.4E-12 3.1E-17 170.5 29.1 245 608-889 312-574 (1025)
21 TIGR00918 2A060602 The Eukaryo 99.5 7.9E-12 1.7E-16 160.8 33.4 154 633-801 968-1122(1145)
22 KOG1934 Predicted membrane pro 99.5 2.4E-11 5.2E-16 152.6 34.6 374 372-800 456-834 (868)
23 PRK10555 aminoglycoside/multid 99.5 1.1E-11 2.3E-16 162.4 30.0 177 608-799 318-499 (1037)
24 PRK09579 multidrug efflux prot 99.5 1.5E-11 3.3E-16 160.6 30.4 174 608-798 311-490 (1017)
25 PRK13022 secF preprotein trans 99.5 5E-12 1.1E-16 142.3 22.3 165 619-800 119-286 (289)
26 TIGR00915 2A0602 The (Largely 99.5 1.4E-11 2.9E-16 161.5 29.6 174 608-798 318-498 (1044)
27 PRK10503 multidrug efflux syst 99.4 2.5E-11 5.5E-16 158.8 28.8 255 608-898 321-596 (1040)
28 PRK09577 multidrug efflux prot 99.4 2.9E-11 6.3E-16 158.3 28.6 174 608-798 317-497 (1032)
29 TIGR00916 2A0604s01 protein-ex 99.4 2.8E-12 6.1E-17 136.2 14.9 137 635-785 52-191 (192)
30 PRK13024 bifunctional preprote 99.4 5.7E-12 1.2E-16 158.4 20.0 153 633-800 269-422 (755)
31 PRK15127 multidrug efflux syst 99.4 5.9E-11 1.3E-15 155.5 29.6 174 608-798 318-498 (1049)
32 PRK13023 bifunctional preprote 99.4 1.4E-11 3.1E-16 152.6 18.5 150 635-799 283-433 (758)
33 COG0841 AcrB Cation/multidrug 99.3 6.4E-11 1.4E-15 152.3 24.7 255 608-897 309-580 (1009)
34 TIGR00914 2A0601 heavy metal e 99.3 1.5E-10 3.1E-15 152.5 27.3 227 608-877 321-564 (1051)
35 TIGR00917 2A060601 Niemann-Pic 99.3 6.4E-10 1.4E-14 146.3 33.0 151 632-796 1050-1203(1204)
36 PF00873 ACR_tran: AcrB/AcrD/A 99.3 9.6E-11 2.1E-15 154.3 25.2 257 608-900 311-589 (1021)
37 PRK14726 bifunctional preprote 99.3 4.7E-11 1E-15 149.8 19.1 149 636-799 378-527 (855)
38 PRK05812 secD preprotein trans 99.3 9.3E-11 2E-15 140.3 17.6 150 634-798 337-487 (498)
39 TIGR00966 3a0501s07 protein-ex 99.2 6.7E-10 1.4E-14 122.8 20.2 140 634-787 102-244 (246)
40 PRK08578 preprotein translocas 99.2 7.7E-10 1.7E-14 124.8 20.6 161 619-801 126-290 (292)
41 PRK12911 bifunctional preprote 99.2 3.1E-10 6.8E-15 143.1 18.7 131 669-800 934-1065(1403)
42 TIGR01129 secD protein-export 99.2 2.4E-10 5.1E-15 134.1 16.7 146 633-793 251-397 (397)
43 PRK12933 secD preprotein trans 99.1 1.3E-09 2.8E-14 131.1 18.4 163 619-799 432-596 (604)
44 TIGR00914 2A0601 heavy metal e 99.1 7.8E-10 1.7E-14 145.6 17.8 179 608-802 859-1041(1051)
45 PRK13024 bifunctional preprote 99.1 3.4E-09 7.5E-14 133.6 22.5 171 611-799 562-735 (755)
46 PF02355 SecD_SecF: Protein ex 99.0 1.1E-08 2.4E-13 108.3 19.2 163 619-798 23-188 (189)
47 TIGR00915 2A0602 The (Largely 99.0 8.2E-09 1.8E-13 135.7 21.5 181 608-804 851-1035(1044)
48 PRK13021 secF preprotein trans 99.0 1.4E-08 3.1E-13 114.2 18.9 162 619-797 118-282 (297)
49 PRK15127 multidrug efflux syst 99.0 2.1E-08 4.5E-13 131.9 22.6 177 608-800 852-1033(1049)
50 PRK14726 bifunctional preprote 98.9 2.5E-08 5.4E-13 125.6 19.5 165 619-800 664-831 (855)
51 PRK10503 multidrug efflux syst 98.9 3E-08 6.6E-13 130.2 19.9 175 608-798 845-1024(1040)
52 PRK09579 multidrug efflux prot 98.9 2E-08 4.2E-13 131.7 17.8 178 608-801 825-1007(1017)
53 PRK10555 aminoglycoside/multid 98.9 7.9E-08 1.7E-12 126.4 21.9 177 608-800 850-1030(1037)
54 COG0341 SecF Preprotein transl 98.8 3E-07 6.6E-12 103.4 21.4 174 612-803 120-296 (305)
55 PRK10614 multidrug efflux syst 98.8 1.2E-07 2.5E-12 124.8 19.4 175 608-798 831-1010(1025)
56 PRK09577 multidrug efflux prot 98.8 2.4E-07 5.1E-12 122.0 22.1 173 608-796 846-1022(1032)
57 PF00873 ACR_tran: AcrB/AcrD/A 98.8 1.7E-07 3.7E-12 123.9 20.8 174 607-796 842-1020(1021)
58 COG3696 Putative silver efflux 98.8 3.6E-07 7.7E-12 112.1 21.0 200 635-875 339-551 (1027)
59 COG4258 Predicted exporter [Ge 98.7 1.3E-06 2.7E-11 102.4 20.0 242 621-910 246-490 (788)
60 PRK08343 secD preprotein trans 98.6 8.7E-07 1.9E-11 104.5 18.9 170 608-793 240-410 (417)
61 PRK13023 bifunctional preprote 98.6 2.6E-06 5.6E-11 106.6 22.8 164 619-799 570-736 (758)
62 PRK12911 bifunctional preprote 98.6 1.5E-06 3.3E-11 110.6 19.4 168 619-803 1226-1401(1403)
63 COG0342 SecD Preprotein transl 98.6 9.4E-07 2E-11 106.3 16.7 151 636-801 349-500 (506)
64 COG4258 Predicted exporter [Ge 98.6 2.6E-07 5.7E-12 107.9 11.5 152 615-790 630-781 (788)
65 KOG3664 Predicted patched tran 98.4 3E-07 6.5E-12 114.2 7.0 181 608-800 303-503 (999)
66 COG0841 AcrB Cation/multidrug 98.2 1.3E-05 2.7E-10 104.2 13.7 174 608-797 830-1007(1009)
67 KOG1935 Membrane protein Patch 97.9 0.00045 9.8E-09 84.1 17.8 133 667-802 943-1076(1143)
68 COG3696 Putative silver efflux 97.8 0.00019 4.2E-09 88.8 14.1 177 607-800 841-1022(1027)
69 COG2409 Predicted drug exporte 97.6 0.0019 4.2E-08 84.6 19.2 176 610-798 736-918 (937)
70 PF03024 Folate_rec: Folate re 94.9 0.0071 1.5E-07 63.2 0.0 97 85-189 16-118 (167)
71 KOG1933 Cholesterol transport 91.2 0.055 1.2E-06 70.7 -0.4 171 615-799 1004-1177(1201)
72 TIGR00920 2A060605 3-hydroxy-3 54.9 6.7 0.00015 50.3 1.9 30 370-399 2-31 (886)
73 COG3301 NrfD Formate-dependent 50.3 4.4E+02 0.0095 30.1 15.4 100 672-773 139-239 (305)
74 PRK02935 hypothetical protein; 38.1 1.2E+02 0.0027 29.1 6.9 60 624-696 8-67 (110)
75 PF11023 DUF2614: Protein of u 37.8 96 0.0021 30.2 6.3 30 667-696 37-66 (114)
76 PF05393 Hum_adeno_E3A: Human 37.5 45 0.00097 30.8 3.8 31 296-326 40-70 (94)
77 PF03649 UPF0014: Uncharacteri 37.0 6.5E+02 0.014 28.3 13.7 55 687-743 113-182 (250)
78 PF09946 DUF2178: Predicted me 31.0 1.9E+02 0.0041 28.2 7.3 21 763-783 89-109 (111)
79 PTZ00370 STEVOR; Provisional 31.0 71 0.0015 36.1 4.9 14 750-763 243-256 (296)
80 PRK09471 oppB oligopeptide tra 30.4 8.8E+02 0.019 27.8 14.2 30 611-640 75-105 (306)
81 PF02754 CCG: Cysteine-rich do 28.0 78 0.0017 28.0 4.0 48 83-130 21-85 (85)
82 PF13323 HPIH: N-terminal doma 25.9 38 0.00083 35.0 1.6 38 368-405 2-39 (153)
83 COG0601 DppB ABC-type dipeptid 25.4 1.1E+03 0.024 27.4 14.7 75 697-772 180-273 (317)
84 PF04123 DUF373: Domain of unk 25.2 3.1E+02 0.0067 32.2 9.0 7 707-713 200-206 (344)
85 PRK10263 DNA translocase FtsK; 23.4 9E+02 0.019 33.6 13.6 12 642-653 32-43 (1355)
86 COG4987 CydC ABC-type transpor 22.1 4.3E+02 0.0092 32.9 9.5 29 770-798 156-184 (573)
87 PRK05771 V-type ATP synthase s 21.9 3.4E+02 0.0073 34.8 9.4 20 675-694 399-418 (646)
88 PF03030 H_PPase: Inorganic H+ 21.4 7.7E+02 0.017 31.7 11.9 66 674-743 298-369 (682)
89 PF05957 DUF883: Bacterial pro 21.3 1.6E+02 0.0035 27.6 4.7 39 365-403 53-91 (94)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=2.1e-187 Score=1792.20 Aligned_cols=1025 Identities=57% Similarity=0.958 Sum_probs=880.1
Q ss_pred eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 001173 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN 128 (1133)
Q Consensus 53 C~~~g~Cg~~~~~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N 128 (1133)
|+|||+||++++++++||++|++|++|+++.+++|+++||+++ +++|||++|+++|++||++|+++++|||||++|
T Consensus 1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N 80 (1204)
T TIGR00917 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN 80 (1204)
T ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence 9999999999999999999999999999999999999999854 479999999999999999999999999999999
Q ss_pred HhhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCCcCCCChhHHhhcCCC---CcCHHHH
Q 001173 129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW 205 (1133)
Q Consensus 129 f~~~~C~~tCsP~Qs~F~~vt~~~~~~~~~~V~~~~~~v~~~~~~~~ydSCk~v~~~~~~~~am~~~gg~---a~~~~~~ 205 (1133)
|+++||+||||||||+||+||++++.+++..|+|+||||+++||+++|||||||++|++|++|||+|||| +|||++|
T Consensus 81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w 160 (1204)
T TIGR00917 81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW 160 (1204)
T ss_pred HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence 9999999999999999999999976556667999999999999999999999999999999999999998 7899999
Q ss_pred HHhhhccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCCCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCceEe
Q 001173 206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK 280 (1133)
Q Consensus 206 l~flG~~~~~~~~~sPfqInf~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sCp~~~~~~~~~~~c~~~ 280 (1133)
|+||||++ ++||||||||+++... ..+++|||..+++|||. .++|||+||++ |||.++++++++++|+++
T Consensus 161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~ 235 (1204)
T TIGR00917 161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL 235 (1204)
T ss_pred HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence 99999984 3589999999987532 34899999999999986 48999999999 999877766668888886
Q ss_pred ecCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCccchhhhhccccCchhhhhccCCCccccc
Q 001173 281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNR 360 (1133)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1133)
. ++|++|+++++|++++++++.++++.+++++++..........++... +..+. +... +....+ +
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~-~~~~~~------~ 300 (1204)
T TIGR00917 236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEIN-SSNNQ---SDQN-TPQRNE------G 300 (1204)
T ss_pred c----CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccc-ccccc---cccc-cccccc------c
Confidence 4 679999999999887776665554444333221111110000000000 00000 0000 101111 1
Q ss_pred chhhhHHHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcce
Q 001173 361 IQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRI 440 (1133)
Q Consensus 361 ~~~~~~~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~ 440 (1133)
....++++|+++|++||.+++||||++|++++++++++++|+.++++++||++||+|+++++++|+++|+++|||++|+
T Consensus 301 -~~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~ 379 (1204)
T TIGR00917 301 -QLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRI 379 (1204)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccce
Confidence 1348999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCC-CCcccchhhhhhhcCCCCCCC
Q 001173 441 EELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDD 519 (1133)
Q Consensus 441 eqviI~~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~yf~~~~~~~~~ 519 (1133)
+|++|+++..+.....++++++++|+++++|+++|++++. ++++++|+|+||.+ ..|.++|+++||+++.+.+++
T Consensus 380 eqvii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~ 455 (1204)
T TIGR00917 380 EQLIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDP 455 (1204)
T ss_pred EEEEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCc
Confidence 9999887521110112469999999999999999998852 36899999999985 689999999999987554422
Q ss_pred c--------CcccchhhhccccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHH
Q 001173 520 F--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWE 591 (1133)
Q Consensus 520 ~--------~~~~~l~~~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE 591 (1133)
. ++.+++.+|... +.+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||
T Consensus 456 ~~~~~~~~~~~~~~~~~c~~~---p~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE 531 (1204)
T TIGR00917 456 ENYDDGFGVDYVKYCFECFTS---PESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWE 531 (1204)
T ss_pred ccccccccccHHHhhhccccC---cchhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHH
Confidence 1 245566677543 34699999999999999999988889999999999999986432 23457899999
Q ss_pred HHHHHHHHhhcccccCCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHH
Q 001173 592 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLS 671 (1133)
Q Consensus 592 ~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~ 671 (1133)
++|.+.++++..+. ...+++++|++++|+++|+++.+..|+++++++|++|++|+++++++++.+++++++||+++|++
T Consensus 532 ~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~ 610 (1204)
T TIGR00917 532 KAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGIS 610 (1204)
T ss_pred HHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHH
Confidence 99999998764221 12368999999999999999999999999999999999999999998766667889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhc--CC---------CHHHHHHHHHHH
Q 001173 672 GVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--EL---------PLETRISNALVE 740 (1133)
Q Consensus 672 gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~--~~---------~~~e~i~~al~~ 740 (1133)
|++++++|+++++|+++|+|+++++++++++|||+|||||||+|+++++|++... +. ++++|++++|++
T Consensus 611 gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~ 690 (1204)
T TIGR00917 611 GVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGE 690 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999998789999999999999999999999987532 22 789999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCC
Q 001173 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS 820 (1133)
Q Consensus 741 ~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~ 820 (1133)
+|+||++|++|+++||++|+++++|++|.||+++|+||+++|++|+|+|||+|++|.||++.+|+|++||++.++.....
T Consensus 691 ~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~ 770 (1204)
T TIGR00917 691 VGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISA 770 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875432111
Q ss_pred CCCCCCCCcchHHHHHHHHhhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCC
Q 001173 821 DKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI 900 (1133)
Q Consensus 821 ~~~~~~~~~~~l~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~ 900 (1133)
+....+.+++.+.+||+++|+|+|+++++|++|+++|++++++|+||+++|++|+||++++|+|||+++||+.+++||+.
T Consensus 771 ~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~ 850 (1204)
T TIGR00917 771 EKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEV 850 (1204)
T ss_pred ccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhcc
Confidence 11112345578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEe-cCCCCChhHhhhhhccccccCcchHHHHHHHhhcCCCCccccCCCcchHHHHHhhhccccccccc-ccCC
Q 001173 901 GPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTN 978 (1133)
Q Consensus 901 g~pvy~Vv~-~~dy~~~~~~q~~~c~~~~C~~~sl~~~l~~~~~~~~~s~i~~~~~sWlddf~~wl~~~~~~ccr-~~~~ 978 (1133)
|||||||++ ++||++++ +|+++||.++|+++||.+++ ++.+|+++|+++|||||++|++|. ++||| ...+
T Consensus 851 gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~------~~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~ 922 (1204)
T TIGR00917 851 GPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVF------NNLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTN 922 (1204)
T ss_pred CCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhh------cccchhcCCchHHHHHHHHHhCcc-ccceeecCCC
Confidence 999999999 59999986 57899999999999999854 466789999999999999999986 68999 4566
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhhHHhhhHHhhccCCCccccCCCCCCccccccccC
Q 001173 979 GSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG 1058 (1133)
Q Consensus 979 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~~fl~~~p~~~C~~gg~~~y~~~v~~~~ 1058 (1133)
+.+|++.+ +.|.+|+.-..-..++|++++|++||++||+++|+.+|++||+++|+++++++.
T Consensus 923 ~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~ 984 (1204)
T TIGR00917 923 GTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQG 984 (1204)
T ss_pred CCcCCCcc------------------ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeec
Confidence 78886332 356666642122257999999999999999999999999999999999999864
Q ss_pred CCCceEEEEEEEEeccCCCChHHHHHHHHHHHHHHHhhcccCCCceeeccccchhhhhHHHHHHHHHHHHHHHhC
Q 001173 1059 YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG 1133 (1133)
Q Consensus 1059 ~~~~~I~as~F~~~~~~l~~~~d~i~a~~~~r~ia~~~~~~~~~~vf~ys~~yvf~eQYl~I~~~t~~~l~~al~ 1133 (1133)
.+++.|.|||||+||++|++|+|+++||+++|+||++++++.+++|||||++|+|||||++|++++++++++|++
T Consensus 985 ~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~ 1059 (1204)
T TIGR00917 985 HANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLG 1059 (1204)
T ss_pred CCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999999999999999998767899999999999999999999999999999874
No 2
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=1e-162 Score=1498.80 Aligned_cols=1006 Identities=46% Similarity=0.803 Sum_probs=885.7
Q ss_pred cCeeecccCCCCCCCCcccCCCCCC-CCCCChhhHHHHHhhCCCCCC---CCCCCHHHHHHHHHHHHhhhhhccCChhHH
Q 001173 51 EFCAMYDICGARSDRKVLNCPYNIP-SVKPDDLLSSKVQSLCPTITG---NVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (1133)
Q Consensus 51 ~~C~~~g~Cg~~~~~~~~~C~~~~~-a~~~~~~~~~~l~~~Cp~~~~---~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (1133)
++|+|||.||+++.++.+||+++.| +++.......++++.||.+.. .+||++.|++.|++|+++|.++++|||+|.
T Consensus 1 ~~c~m~g~cg~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~lc~~~~~~~~~~Cct~~Q~~~L~~~l~~a~~~l~rcP~c~ 80 (1201)
T KOG1933|consen 1 AYCAMYGKCGKNSGNAVLNCPLNEPTARPIISNAYYKIQKLCPGLPTGDFTLCCTASQLELLKLSLQQAGPLLSRCPSCF 80 (1201)
T ss_pred CeeEEEcccccCCCCCccCCccCCCccccccccHHHHHHHhccccccCCceeeecHHHHHHHHhhhhhhhhhhccCCccc
Confidence 5799999999998888999999998 776667778889999999864 599999999999999999999999999999
Q ss_pred hhHhhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCCcCCCChhHHhhcC--CCCcCHHH
Q 001173 127 RNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIG--GGAQNFKD 204 (1133)
Q Consensus 127 ~Nf~~~~C~~tCsP~Qs~F~~vt~~~~~~~~~~V~~~~~~v~~~~~~~~ydSCk~v~~~~~~~~am~~~g--g~a~~~~~ 204 (1133)
+||.++||++|||||||.|++|+.+..- .|++++|+++.+|++++|+|||+|+|+++|++||++|+ +||+|+++
T Consensus 81 ~nf~~l~c~~tcspnqs~F~~v~~~~~~----~V~~ie~~~~~~fae~~y~sC~~v~~~~~~~~ai~~~~~g~~a~~~~~ 156 (1201)
T KOG1933|consen 81 DNFVNLFCHFTCSPNQSLFWNVTATAAY----KVQQIEYSLTDSFAEGLYESCKRVKFAAANGLAIRLMCLGKGAKNFEE 156 (1201)
T ss_pred ccchhhhhhcccCCCcCceEEeeccccc----eeeEEEEEEeehhhhhccccccccchhcccchhhhhhhcCCCchHHHH
Confidence 9999999999999999999999987532 29999999999999999999999999999999999885 36778999
Q ss_pred HHHhhhccCCCCCCCCceeEEecCCCCCCCCcccCCCCCCCCCCCC-CCccccCCCCCCCCCCCCCCCCCCCCceEeecC
Q 001173 205 WFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGS-LGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGS 283 (1133)
Q Consensus 205 ~l~flG~~~~~~~~~sPfqInf~~~~~~~~~~~~~~~~~~~C~~~~-~~CsC~dC~~~~sCp~~~~~~~~~~~c~~~~~~ 283 (1133)
|++|+|++++. .++||+|+|+.+.+.+..+.+||...++|++.. .+|+|+||++ +||...+++.+.. ++.+|+
T Consensus 157 ~~~f~g~~~~~--~~~Pl~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~--~c~~~~~~~~~~~--~~~v~~ 230 (1201)
T KOG1933|consen 157 WLEFIGDKNPG--QSSPLRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPE--TCPASLLLKSPTE--TFVVGG 230 (1201)
T ss_pred HHHHhcCCCcc--CCCcceeccccccCCccceeecccccccCCcccccccchhcchh--hcCccccCCCCcc--ceeecc
Confidence 99999998632 589999999988654445899999999999874 9999999999 9997655444444 466676
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCccchhhhhccccCchhhhhccCCCcccccchh
Q 001173 284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQL 363 (1133)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1133)
+..-+..+++.++|.+++++++.+......+.|++..+..... +.++.. .
T Consensus 231 ~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~----~ 280 (1201)
T KOG1933|consen 231 IPGLSVFLILAFIFFAALLVFLGYSLKVLHRIRAKLGDDGTPV--------------------------DSSPTS----D 280 (1201)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHheeccccccccccCccc--------------------------cCCccc----c
Confidence 6433333366667777777777665443333332221110000 000000 1
Q ss_pred hhHHHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEE
Q 001173 364 SIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEEL 443 (1133)
Q Consensus 364 ~~~~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqv 443 (1133)
.+++..++.+|++||.|+++||..++.+++.+.+.++.|+.+.+++|||++||+.++|++|+|+++|+.|||||||+||+
T Consensus 281 ~~~~~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r~eqi 360 (1201)
T KOG1933|consen 281 FSTETFLEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYRTEQI 360 (1201)
T ss_pred hhHHHHHHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhhhhhh
Confidence 15889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCC--CcccchhhhhhhcCCCCCC---
Q 001173 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ--DCATQSVLQYFKMDPKNFD--- 518 (1133)
Q Consensus 444 iI~~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~--~C~v~S~~~yf~~~~~~~~--- 518 (1133)
++.+.+.++.. .+.++..+.|++++++|+.|.++.... ++++++|+|++|.++ .|.++|++|||+++++.++
T Consensus 361 ~l~~~~~~~~~-~~~i~~~~~l~~vldiq~~v~~~~~~~--~~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~ 437 (1201)
T KOG1933|consen 361 ILTAVNTSSEV-YPPILLVEGLELVLDIQNSVKELLTSS--DNISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKL 437 (1201)
T ss_pred eeeccCCcccc-CCchHHHHHHHHHHHHHHHHHHhccCC--CccchheeeeeeccCCcchhhhhhHhhhccChhhhhccc
Confidence 99886555432 234999999999999999999887543 278999999999874 5889999999998876432
Q ss_pred -----CcCcccchhhhccccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHH
Q 001173 519 -----DFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKA 593 (1133)
Q Consensus 519 -----~~~~~~~l~~~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~ 593 (1133)
-+.|.+|+.+|...|. .|+++||+|++|..++||+.++++..|+++++||.++|+..+... .+.+..||++
T Consensus 438 ~~~~~~~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg~~~~~~~~a~~~~vTf~v~n~~~~~~~-~~~a~~We~~ 513 (1201)
T KOG1933|consen 438 NDSFFMDFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGGFSGKGYSLANALVVTFLVTNYYLAPEL-TDQAVAWEKA 513 (1201)
T ss_pred cccchhhHHHHHHHHHhhCch---hhhcccCCCCCchhhhcCCCccchhhceeEEEEEEEEeeccCcch-hhHHHHHHHH
Confidence 1356789999987664 799999999999999999987668889999999999998764322 5889999999
Q ss_pred HHHHHHhhcccccCCCCeE-EEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHH
Q 001173 594 FVQLAKDELLPMVQSKNLT-LAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSG 672 (1133)
Q Consensus 594 f~~~v~~~~~~~~~~~~l~-v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~g 672 (1133)
|++.++++..+ .+. ++|++|+|+++||++.+..|+.+++++|.+|++|+.+++|+.+.+++.+++||+.+|+.|
T Consensus 514 f~~~~~~~~~~-----~~~~~sf~aErsi~~ei~~~s~~D~~t~~isy~~mf~yi~~~Lg~~~~~r~vlidSkv~lgi~G 588 (1201)
T KOG1933|consen 514 FVNFAKDYLLP-----HLLAISFMAERSIEDEINRESEGDVITVVISYLVMFLYINLALGHYRSCRRVLIDSKVLLGISG 588 (1201)
T ss_pred HHHHHHHHhhh-----ccchheeeccCccchhhccCCcCCceEEEeehHHHHHHHHHHhccCcccceeeeeceeeccccc
Confidence 99999987643 333 899999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHHHH
Q 001173 673 VVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASL 750 (1133)
Q Consensus 673 vl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~--~~~~~e~i~~al~~~g~si~ltsl 750 (1133)
++++++++..++|+++++|++.+.++.+|+||+++++|+|++|+++++|+|..+ +.+.+++|..++.++||+|+.+++
T Consensus 589 v~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~qr~~~~~~~~~~~~I~~~l~~~~Psil~~sl 668 (1201)
T KOG1933|consen 589 VLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQRDGRSKSEPLEQRIGSVLGEVGPSILLSSL 668 (1201)
T ss_pred eEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeecccccccCCCcccccchhhhccCcHHHHhHH
Confidence 999999999999999999999999999999999999999999999999998753 388999999999999999999999
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcc
Q 001173 751 SEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPG 830 (1133)
Q Consensus 751 t~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~ 830 (1133)
.+..+|+++++++||+||.|+++++++|++++++|+|.|.|++++|.||++.+|.|++||+|.++.. . .+..++
T Consensus 669 se~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~~~~r~d~~~~~~~~~~~-----~-~~~~~~ 742 (1201)
T KOG1933|consen 669 SENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRRLDNRIDIFCCVKPSEEE-----S-VRGNEG 742 (1201)
T ss_pred HhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhhhcCCcceEecccccccc-----c-ccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999976541 1 122337
Q ss_pred hHHHHHHHHhhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCCCCCEEEEEec
Q 001173 831 LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN 910 (1133)
Q Consensus 831 ~l~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~g~pvy~Vv~~ 910 (1133)
.+.+||+.+|+|+++++.+|+.++++|.+++.+++++..+|+.|+||+..+|+|||+.+||+.++++++.|||||+|+++
T Consensus 743 ~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Syl~dyF~~~~e~l~~GPPvyfv~k~ 822 (1201)
T KOG1933|consen 743 LLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSYLSDYFKNLNEFLNVGPPVYFVLKG 822 (1201)
T ss_pred hHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccchhhhHhhhhhhhcccCCCEEEEecC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCCChhHhhhhhccccccCcchHHHHHHHhhcCCCCccccCCCcchHHHHHhhhccccccccc-ccCCCCCCCCCCCC
Q 001173 911 -YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTNGSYCPPDDQP 988 (1133)
Q Consensus 911 -~dy~~~~~~q~~~c~~~~C~~~sl~~~l~~~~~~~~~s~i~~~~~sWlddf~~wl~~~~~~ccr-~~~~~~~c~~~~~~ 988 (1133)
+||+++. .||++|++.+|+++|+.|++..+++.+|.+|+++|..+|+|||++|+.|+. +||| +..++.|||+..++
T Consensus 823 ~~~~s~~~-~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~~~~~-~cCr~~~~~g~fc~~~~~~ 900 (1201)
T KOG1933|consen 823 GLDLSSPK-DQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWLSPQS-SCCRLKPDPGQFCPPSLND 900 (1201)
T ss_pred CCCCCChh-cccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheeecccC-CccccCCCCCCcCCCCccc
Confidence 8999886 569999999999999999999999999999999999999999999999975 4999 66778999987664
Q ss_pred CCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhhHHhhhHHhhccCCCccccCCCCCCccccccccCCCCceEEEEE
Q 001173 989 PCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASS 1068 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~~fl~~~p~~~C~~gg~~~y~~~v~~~~~~~~~I~as~ 1068 (1133)
..|.+|..+.+....||+.++|++||++|+++.|+.+|++||+|+|+.++++.....+.|+|++
T Consensus 901 ----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~gg~a~y~~av~l~~~~~~~iqas~ 964 (1201)
T KOG1933|consen 901 ----------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAKGGHAAYSSAVSLTFTHEGGIQASY 964 (1201)
T ss_pred ----------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCCCCceeeecceEEEecCcccchhhh
Confidence 4677787444433458999999999999999999999999999999999999765556799999
Q ss_pred EEEeccCCCChHHHHHHHHHHHHHHHhhcccC-CCceeeccccchhhhhHHHHHHHHHHHHHHHh
Q 001173 1069 FRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL-QMEIFPYSVFYMYFEQYLDIWRTALINLAIAI 1132 (1133)
Q Consensus 1069 F~~~~~~l~~~~d~i~a~~~~r~ia~~~~~~~-~~~vf~ys~~yvf~eQYl~I~~~t~~~l~~al 1132 (1133)
||+||++++++.||++|++++|+++.++++.+ +.++||||+||+|||||++||+.|+.++++++
T Consensus 965 F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~~~l~i~i 1029 (1201)
T KOG1933|consen 965 FMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTLTNLGIDI 1029 (1201)
T ss_pred hhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhhhhhhHHH
Confidence 99999999999999999999999999998653 58999999999999999999999999999876
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=2e-110 Score=1055.61 Aligned_cols=720 Identities=23% Similarity=0.365 Sum_probs=592.2
Q ss_pred hHHHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCC-cceEEE
Q 001173 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPF-YRIEEL 443 (1133)
Q Consensus 365 ~~~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~-~r~eqv 443 (1133)
+++.+++++|++||.+|+|||++||+++++++++|++|+.++++||||++||++++|++++|++||+++|||+ ||++|+
T Consensus 38 ~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~~~r~~Q~ 117 (1145)
T TIGR00918 38 WLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEEAMFTPQL 117 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEeccCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccC-------------C--CCccc-----
Q 001173 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-------------G--QDCAT----- 503 (1133)
Q Consensus 444 iI~~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~-------------~--~~C~v----- 503 (1133)
||+++++ +|.+||++|+|+++++++++++++++...+++++|+|+|+||. + ..|.+
T Consensus 118 ii~~~~~----~g~~vl~~~~L~~~~~~~~~i~~~~v~~~~~~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpld 193 (1145)
T TIGR00918 118 LIQTPHQ----EGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLD 193 (1145)
T ss_pred EEECCCC----CCCCcCCHHHHHHHHHHHHHHHHhhccccCCccchhhhccCCCCcccccchhhhcccCCCCcEEecccc
Confidence 9997532 3447999999999999999999997555578999999999998 2 46999
Q ss_pred --------chhhhhhhcCCC----CCCCcC--------------cccchhh-----------hccccCCccccccc----
Q 001173 504 --------QSVLQYFKMDPK----NFDDFG--------------GVEHVKY-----------CFQHYTSTESCMSA---- 542 (1133)
Q Consensus 504 --------~S~~~yf~~~~~----~~~~~~--------------~~~~l~~-----------~~~~~~~~~~cl~~---- 542 (1133)
+|+.+||+++++ ++++.. |.++++. |++.+ +.+|+++
T Consensus 194 cfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~y~~~pC~~~~--d~~C~~~apn~ 271 (1145)
T TIGR00918 194 CFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPA--DPDCPDTAPNK 271 (1145)
T ss_pred hhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccchHHHHHHHHHhcccccccCCCcCCCC--CCCCCCccccc
Confidence 777777776655 444322 5566666 87643 2579998
Q ss_pred -cCCCC--------------------CCCccCCCcC---CCcccceeEEEEEEEecc---------------cccccc-c
Q 001173 543 -FKGPL--------------------DPSTALGGFS---GNNYSEASAFVVTYPVNN---------------AVDREG-N 582 (1133)
Q Consensus 543 -~g~Pl--------------------~~~~~lGG~~---~~~~~~A~Alvlt~~l~n---------------~~~~~~-~ 582 (1133)
+|+|+ .+++++||++ ++++.+|+|+++||.|+| +.+.++ .
T Consensus 272 ~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 351 (1145)
T TIGR00918 272 NSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEK 351 (1145)
T ss_pred ccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCCEeeeeeEEEEEEecChHHHHHHhhccccccccCcchhH
Confidence 99999 8899999987 457899999999999987 221111 1
Q ss_pred chHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q 001173 583 ETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYI 662 (1133)
Q Consensus 583 ~~~~a~~WE~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v 662 (1133)
..+.+++||++|.+.+++... ...+..+.+.+++|+++|+++.++.+++.++++|++|++|++++++++ +++
T Consensus 352 a~~va~~We~~F~~~v~~~~~---~~~~~~~~~fss~SL~del~~~s~~~~~~~~is~~lm~~Ya~~~l~~~-----d~v 423 (1145)
T TIGR00918 352 AAAVLEAWQRNFSEEVQQSLP---KNSSQKILVFSSTTLDDILKKFSDVSAIRIVSGYLLMLAYACLTMLRW-----DCA 423 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cccCCceEEEecccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHh
Confidence 113489999999999987432 123334444445999999999999999999999999999999999886 479
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHh
Q 001173 663 SSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVG 742 (1133)
Q Consensus 663 ~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g 742 (1133)
+||++||++|++++++|+++++|+++++|+++|+++++|+|||+|||||||+|+|+|+|++..+..++++|++++++++|
T Consensus 424 ~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~~t~~~~~v~~r~~~~l~~~g 503 (1145)
T TIGR00918 424 KSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNIPFEERTGECLKRTG 503 (1145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHhhcCccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998789999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCC--------
Q 001173 743 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS-------- 814 (1133)
Q Consensus 743 ~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~-------- 814 (1133)
+||++||+|++++|++|++++||++|.||++++++|+++|++|+|+|||+|+||.||++++|+|++||.+.+
T Consensus 504 ~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~~R~D~~cC~~~p~~~~~~~~ 583 (1145)
T TIGR00918 504 ASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQI 583 (1145)
T ss_pred ceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997641
Q ss_pred -CC-------cc-------C-----------------------------CC---------CCCCC---------------
Q 001173 815 -SS-------YA-------D-----------------------------SD---------KGIGQ--------------- 826 (1133)
Q Consensus 815 -~~-------~~-------~-----------------------------~~---------~~~~~--------------- 826 (1133)
+. .. . .+ .+...
T Consensus 584 ~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 663 (1145)
T TIGR00918 584 EPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDIAGSTRDLLSQFEDSKAACLS 663 (1145)
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 00 0 00 00000
Q ss_pred --CCcchHHHHHHHHhhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCCCCCE
Q 001173 827 --RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPL 904 (1133)
Q Consensus 827 --~~~~~l~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~g~pv 904 (1133)
...+.+.+|++++|+|||+++++|++|+++|++++++|+||+++|+.|||+++++|+|||+.+||+.+++||+. +|+
T Consensus 664 ~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~DSyl~~yf~~~~~yF~~-~~v 742 (1145)
T TIGR00918 664 LPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRDTNEHDFLDAQFRYFSF-YNM 742 (1145)
T ss_pred ccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCCCcHHHHHHHHHHhcCc-Cce
Confidence 01146788999999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred EEEEec-CCCCChhHhhhhhccccccCcchHHHHHHHhhcCCCCccccCC-----CcchHHHHHhhhcc-cc--cccccc
Q 001173 905 YFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP-----AASWLDDFLVWISP-EA--FGCCRK 975 (1133)
Q Consensus 905 y~Vv~~-~dy~~~~~~q~~~c~~~~C~~~sl~~~l~~~~~~~~~s~i~~~-----~~sWlddf~~wl~~-~~--~~ccr~ 975 (1133)
|+|+++ +||++.+ +++ ++.++++++.+|+.++ +++|||||++||++ +. ++|||.
T Consensus 743 y~V~~~~~dy~~~q---~~l--------------~~l~~~f~~~~~i~~~~~~~~~~~WLddf~~wL~~lq~~~d~~~~~ 805 (1145)
T TIGR00918 743 YAVTQGNFDYPTQQ---QLL--------------YDLHQSFSSVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRD 805 (1145)
T ss_pred EEEeCCCCCchHHH---HHH--------------HHHHHHhccCceeecCCCCCccchHHHHHHHHHHHhhhhhhhhhhh
Confidence 999995 9996542 221 2334567788888876 47999999999997 32 578883
Q ss_pred --cCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCc---------------ccccCCC--CCCCCChhhHHhhhHHhhcc
Q 001173 976 --FTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT---------------CFHHSDL--LKDRPSTIQFKEKLPWFLNA 1036 (1133)
Q Consensus 976 --~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~---------------c~~~~~~--~~~~p~~~~F~~~L~~fl~~ 1036 (1133)
...+.||++++.. ..|.. |..+.+. .+|+|++++||+||+.|+++
T Consensus 806 g~~~~~~~~n~s~~~----------------~~~~~l~~qtg~~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~ 869 (1145)
T TIGR00918 806 GRITKENYRNGSDDA----------------VLAYKLLVQTGHRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSN 869 (1145)
T ss_pred cccccccccCCcccc----------------chhhhhcccccccCCccccccccccccccccCCCCHHHHHHHHHHHHcC
Confidence 2456677655321 11111 1111111 15799999999999999988
Q ss_pred CCCccccCCC-----CCCcccc-cccc-----CCCCceEEEEEEEEeccCCCChHHHHHHHHHHHHHHHhhcccCCCcee
Q 001173 1037 LPSASCAKGG-----HGAYTNS-VDLK-----GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIF 1105 (1133)
Q Consensus 1037 ~p~~~C~~gg-----~~~y~~~-v~~~-----~~~~~~I~as~F~~~~~~l~~~~d~i~a~~~~r~ia~~~~~~~~~~vf 1105 (1133)
+|...-...+ -..|..+ .++. ....+.+..++||+||++|++++|+++|++++|+|+++++ ..++++|
T Consensus 870 ~~~~y~~sq~~~~p~~~~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~-~~~~~vf 948 (1145)
T TIGR00918 870 DPVAYAASQANIYPHPPEWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYE-GFGLPSY 948 (1145)
T ss_pred CcchhhcccccccCCcchhcccccccccccccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhh-hcCceec
Confidence 7652211100 0111111 1211 0112334556999999999999999999999999999997 4689999
Q ss_pred eccccchhhhhHHHHHHHHHHHHHHHhC
Q 001173 1106 PYSVFYMYFEQYLDIWRTALINLAIAIG 1133 (1133)
Q Consensus 1106 ~ys~~yvf~eQYl~I~~~t~~~l~~al~ 1133 (1133)
||+.+|+|||||++|++.+++++++|++
T Consensus 949 ~~g~~fvf~eQy~~i~~~~~~~l~~al~ 976 (1145)
T TIGR00918 949 PSGYPFLFWEQYMGLRHWLLLSISVVLA 976 (1145)
T ss_pred cCCCceeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999763
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=1.4e-76 Score=752.49 Aligned_cols=635 Identities=31% Similarity=0.516 Sum_probs=515.1
Q ss_pred HhhccceEEeccCcccccCCCCHHHHHHHHhhhccC----CCcceEEEEEEeccCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 001173 400 CLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLA----PFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKI 475 (1133)
Q Consensus 400 ~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fg----p~~r~eqviI~~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I 475 (1133)
+.|+.++..+.|.. .|+|++++++.|....++-|+ +..+. +++.+. + .++|+|+++.|+++.+++++|
T Consensus 2 ~~~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~~~~~~--~~i~a~----~-~~~nlL~~~~l~ei~~l~~~I 73 (798)
T PF02460_consen 2 SSDIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGSPFRRF--VIIIAK----D-GGSNLLRPEYLDEILQLDDFI 73 (798)
T ss_pred CCCcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCCCceEE--EEEEEe----c-CCCCCcCHHHHHHHHHHHHHH
Confidence 45777787888866 899999999988765555443 33333 222221 1 234799999999999999999
Q ss_pred hc-ccccccCccccccccccccCCCCcccchhhhhhhc-CCCCCCCcCcccchhhhccccCCccccccccCCCCCCCccC
Q 001173 476 DG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKM-DPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTAL 553 (1133)
Q Consensus 476 ~~-i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~-~~~~~~~~~~~~~l~~~~~~~~~~~~cl~~~g~Pl~~~~~l 553 (1133)
.+ ++...++++++++|+|.++.+..|..++..++... +..+ ....+.+| ++..+|.|++.+..+
T Consensus 74 ~~~~~v~~~~~~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ltyP---------~~~~~~~~~~l~~~~ 139 (798)
T PF02460_consen 74 MNNITVEDDGETITYKDLCAKYCDLNCPVNSFLNFELESNRSN-----DNINLTYP---------IMNIFGQPIFLGPNF 139 (798)
T ss_pred HHhceeccCCeeeeccccCCCccCCCcchhHHHHHHHHhhccC-----CceeecCC---------ccCCCCcccccCcee
Confidence 87 56555667899999999986678888888775221 1111 01123332 334468889888999
Q ss_pred CCcCC----CcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHHhhh
Q 001173 554 GGFSG----NNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRES 629 (1133)
Q Consensus 554 GG~~~----~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s 629 (1133)
||++. +.+.+|++++++|.++... ++..+.+++||+++.+.+++.. ...++++++.+++++++|+.+.+
T Consensus 140 ggv~~~~~~~~i~~a~a~~l~y~l~~~~---~~~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~~ 212 (798)
T PF02460_consen 140 GGVTTDPDNGNIESAKAVVLTYMLNTDD---EEQEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRNS 212 (798)
T ss_pred cCccccCCcchhheeEEEEEEEEccccc---chhhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHHH
Confidence 99862 3578899999999987432 2456778999999999887643 23479999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhc
Q 001173 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAV 709 (1133)
Q Consensus 630 ~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgI 709 (1133)
..+++.+.+++++|++|+.+.+.+.+..+.++++||+++|++|++++++|+++++|++.++|+++++ ++.++|||+|||
T Consensus 213 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgI 291 (798)
T PF02460_consen 213 QTLVPLFAIGFALMFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGI 291 (798)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHH
Confidence 9999999999999999999887765545567899999999999999999999999999999999998 578999999999
Q ss_pred cccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 710 GVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 789 (1133)
Q Consensus 710 GvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~f 789 (1133)
||||+|+++++|++.....+++||++++++++|+||++||+|++++|++|+++++|+||.||+|+|++|+++|++|+|+|
T Consensus 292 GvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f 371 (798)
T PF02460_consen 292 GVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFF 371 (798)
T ss_pred HHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccccccccCCCCccC-CCCC-----CCCCCcchHHHHHHHHhhhhhcccceeehhHHHHHHHHHH
Q 001173 790 VALIVFDFLRAEDKRVDCIPCLKLSSSYAD-SDKG-----IGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLA 863 (1133)
Q Consensus 790 palL~l~~rR~~~~r~d~~~c~~~~~~~~~-~~~~-----~~~~~~~~l~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~ 863 (1133)
+|+|++++||++.+|++++||.+..+...+ .+++ ........+.++++++|+|++.++++|++|+++|++++++
T Consensus 372 ~a~l~l~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~ 451 (798)
T PF02460_consen 372 PAILVLDGRREAAGRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGV 451 (798)
T ss_pred HHHHHHHHHHHHhcccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999999999999999998543221110 0000 1112233678899999999999999999999999999999
Q ss_pred HHhhhcccCCCcccccCCCCCchHhHHHHHHHhhc-CCCCCEEEEEec-CCCCChhHhhhhhccccccCcchHHHHHHHh
Q 001173 864 SIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHL-RIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRA 941 (1133)
Q Consensus 864 si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f-~~g~pvy~Vv~~-~dy~~~~~~q~~~c~~~~C~~~sl~~~l~~~ 941 (1133)
|+||+.+++.|+|+++++|+|||+++|++..++|| +.|+|+++++++ .||+++++ |+++ .++.+++++.
T Consensus 452 siyG~~~i~~gld~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~-~~~l--------~~lv~~fe~~ 522 (798)
T PF02460_consen 452 SIYGCTQIKEGLDPEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPEN-QDRL--------NSLVQEFENS 522 (798)
T ss_pred HHHhhcccCCCCChhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchHH-HHHH--------HHHHHHHhcc
Confidence 99999999999999999999999999999998887 679999999997 79999865 4443 2566666532
Q ss_pred hcCCCCccccCCCcchHHHHHhhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCC
Q 001173 942 SLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRP 1021 (1133)
Q Consensus 942 ~~~~~~s~i~~~~~sWlddf~~wl~~~~~~ccr~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p 1021 (1133)
+ .+....++.+||+||.+|+++.. ...+ +. .
T Consensus 523 ---~-~~~~~~~t~~WL~~y~~~l~~~~---------~~~~----------------------------------~~--~ 553 (798)
T PF02460_consen 523 ---P-YSIGNNSTSFWLRDYLNFLNSIN---------SSFQ----------------------------------DD--N 553 (798)
T ss_pred ---c-cccccccchhhHHHHHHHHhhcc---------cccc----------------------------------cc--c
Confidence 1 22334567899999999997510 0000 00 0
Q ss_pred ChhhHHhhhHHhhccCCCccccCCCCCCcccccccc--CCCCceEEEEEEEEeccCCCChHHHHHHHHHHHHHHHhhccc
Q 001173 1022 STIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDS 1099 (1133)
Q Consensus 1022 ~~~~F~~~L~~fl~~~p~~~C~~gg~~~y~~~v~~~--~~~~~~I~as~F~~~~~~l~~~~d~i~a~~~~r~ia~~~~~~ 1099 (1133)
+++.|++.|++||+.++ ...|..++.++ ..+.+.|.++||+++++++.+++|.+++++++|+|+++++
T Consensus 554 ~~~~~~~~l~~FL~~~~--------~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~-- 623 (798)
T PF02460_consen 554 DKEFFYNLLPEFLNSPE--------YRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYS-- 623 (798)
T ss_pred cceeeeccchhhhcccc--------ccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcce--
Confidence 11458999999998743 34588888775 2345679999999999999999999999999999999885
Q ss_pred CCCceeeccccchhhhhHHHHHHHHHHHHHHHhC
Q 001173 1100 LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG 1133 (1133)
Q Consensus 1100 ~~~~vf~ys~~yvf~eQYl~I~~~t~~~l~~al~ 1133 (1133)
++++++|++.|+|||||++|++++++++++|++
T Consensus 624 -~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~ 656 (798)
T PF02460_consen 624 -DFNVFVFSPFFIFYDQYLSIVPETIQNIGIALV 656 (798)
T ss_pred -ecceEeeccchhhHhhhhhcchHHHHHHHHHHH
Confidence 489999999999999999999999999999874
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=8.7e-75 Score=715.04 Aligned_cols=666 Identities=23% Similarity=0.386 Sum_probs=548.1
Q ss_pred hHHHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCc---ceE
Q 001173 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFY---RIE 441 (1133)
Q Consensus 365 ~~~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~---r~e 441 (1133)
++++.+.++|+++|.+++||||.+++++++++++++.|+..++.+.|+.++|.|.++++|.|++.+.|.++-++ .+.
T Consensus 4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~~~~g~~~~ 83 (868)
T KOG1934|consen 4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPLFYPGRTIA 83 (868)
T ss_pred hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccccCCCceeE
Confidence 68899999999999999999999999999999999999888889999999999999999999999999987643 222
Q ss_pred EE-EEEeccCCCCCCCCCCCCHHHHHHHHHHHHHhhc-ccccccCccccccccccccCCCCcccchhhhhhhcCCCCCCC
Q 001173 442 EL-ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDD 519 (1133)
Q Consensus 442 qv-iI~~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~-i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~ 519 (1133)
+. ++... +++|+|++++++++.++.+.|.+ ++...++...+++|+|.+.-+..|..+-.....+.+...
T Consensus 84 ~~~~~~~~------~~gniL~~~~l~e~~~i~~~i~~n~~~~~~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~~~--- 154 (868)
T KOG1934|consen 84 IFRFIYLK------DGGNILRPEYLDEVLQIDDYISNNLTVDVDGRRITYKDFCMRNCDVNCFYNLLLILLKRLTIS--- 154 (868)
T ss_pred eEEEEEec------cCccccCHHHHHHHHHHHHHHHhheeeecCCceeehhhhhhcCCCcchhhHHHHHHhhcccCC---
Confidence 21 22221 35789999999999999999984 555556677899999998665667666665555432111
Q ss_pred cCcccchhhhccccCCccccccccCCCCCCCccCCCcC----CCcccceeEEEEEEEecccccccccchHHHHHHHHHHH
Q 001173 520 FGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFS----GNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFV 595 (1133)
Q Consensus 520 ~~~~~~l~~~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~----~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~ 595 (1133)
+..-.++|+. +..+|.+++.+..+||++ ++++.+|+|+++.|.++-.++ +..+.+.+||+++.
T Consensus 155 -~~~~~lTYP~---------~~~~~~~~~l~~~f~GV~~~~~~~~i~sakav~L~y~~~~~~~---~~~~~~~~wE~~~~ 221 (868)
T KOG1934|consen 155 -RPQFNLTYPI---------TEVFGDKIYLGPNFGGVKLGPEDGRIKSAKAVVLYYRLELKTD---ETEQVAKEWERSLE 221 (868)
T ss_pred -CCceEEecCc---------cccCCCceecccccccceecCCCCceeEEEEEEEEEEeecCCc---chHHHHHHHHHHHH
Confidence 0012344442 234567888888899975 346789999999999985432 45688999999999
Q ss_pred HHHHhhcccccCCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHH
Q 001173 596 QLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVL 675 (1133)
Q Consensus 596 ~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~ 675 (1133)
+.+.+.. ++..+++++.+...+++|+.|.+..-++.+.+++++|++|..+.... .+|++||++||++|+++
T Consensus 222 ~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f~il~~F~~~t~~~-----~~~v~SKp~lai~g~l~ 292 (868)
T KOG1934|consen 222 DYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGFAILVIFSILTSFM-----IDWVRSKPILAILGVLS 292 (868)
T ss_pred HHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHHHHHHHHHHHhhcc-----hhhhhhhHHHHHHHHHh
Confidence 8887653 34459999999999999999999999999999999999998877532 35799999999999999
Q ss_pred HHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001173 676 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLA 755 (1133)
Q Consensus 676 v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~ 755 (1133)
.++|+++++|++.|+|.+++. +..++|||+|||||||+|+|+++|+|+.+..+.++|++++|+++||||++||+|++++
T Consensus 293 p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SItITSlTn~ls 371 (868)
T KOG1934|consen 293 PVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSITITSLTNVLS 371 (868)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCeeeHHHHHHHHH
Confidence 999999999999999999998 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCC-----CCCCCCCCcc
Q 001173 756 FAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS-----DKGIGQRKPG 830 (1133)
Q Consensus 756 F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~-----~~~~~~~~~~ 830 (1133)
|++|+++++|+||.||+++++||+++|++|+|||.|+|++.++|+.+++++.+++...+...... .+.....++.
T Consensus 372 FgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 451 (868)
T KOG1934|consen 372 FGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLEKTEEQKSSSSSSSSSLHNP 451 (868)
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCccccccccccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999998766554332221110 0011123445
Q ss_pred hHHHHHHHHhhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcC-CCCCEEEEEe
Q 001173 831 LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFVVK 909 (1133)
Q Consensus 831 ~l~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~-~g~pvy~Vv~ 909 (1133)
...++++++|+|||+++++|+++++++++|+++++||+.+++.|+|+++++|+|||+.++++..++++. .|.++.++|.
T Consensus 452 ~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~ 531 (868)
T KOG1934|consen 452 ILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSLRLQEKYFWEYGQQVAVFVN 531 (868)
T ss_pred hHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHHHHHHHHhhccCceEEEEEc
Confidence 678899999999999999999999999999999999999999999999999999999999999999984 6899999999
Q ss_pred c-CCCCChhHhhhhhccccccCcchHHHHHHHhhcCCCCccccCCCcchHHHHHhhhcccccccccccCCCCCCCCCCCC
Q 001173 910 N-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP 988 (1133)
Q Consensus 910 ~-~dy~~~~~~q~~~c~~~~C~~~sl~~~l~~~~~~~~~s~i~~~~~sWlddf~~wl~~~~~~ccr~~~~~~~c~~~~~~ 988 (1133)
+ +|+++++++.+. +.+++.+| ..| .+...+.+.+||+||.+|+... +..
T Consensus 532 np~dl~~~~~~~~~---------~~~~~~fE---~~~-~~~G~~sT~~wlr~y~~~~~~~---------~~~-------- 581 (868)
T KOG1934|consen 532 NPPDLSNPENRDNL---------NELVSEFE---STP-YSMGRESTKFWLREYLNFLFEK---------NAE-------- 581 (868)
T ss_pred CCccCCCHHHHHHH---------HHHHHHHh---cCC-cccCcccchhHHHHHHHHHhhh---------ccc--------
Confidence 7 899998765432 23444443 332 2334455677999999984421 100
Q ss_pred CCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhhHHhhhH-HhhccCCCccccCCCCCCccccccccC--CCCceEE
Q 001173 989 PCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLP-WFLNALPSASCAKGGHGAYTNSVDLKG--YENGIVQ 1065 (1133)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~-~fl~~~p~~~C~~gg~~~y~~~v~~~~--~~~~~I~ 1065 (1133)
...++++|+..+. +|+.. ++...|..++.+++ .++..|.
T Consensus 582 ------------------------------~~~~~~~~~~~~~~~fl~~--------~~~~~~~~di~~~~~~~~~~~i~ 623 (868)
T KOG1934|consen 582 ------------------------------LEDNDDEFYDHLYESFLKS--------PEFSFWRNDIVFDNKSDEETIIF 623 (868)
T ss_pred ------------------------------ccCCCcchhhhhHHHHhcc--------cccccCccceEeccCCCCCceEE
Confidence 0012467777776 55555 23567888988863 3456799
Q ss_pred EEEEEEeccCCCChHHHHHHHHHHHHHHHhhcccCCCceeeccccchhhhhHHHHHHHHHHHHHHHhC
Q 001173 1066 ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG 1133 (1133)
Q Consensus 1066 as~F~~~~~~l~~~~d~i~a~~~~r~ia~~~~~~~~~~vf~ys~~yvf~eQYl~I~~~t~~~l~~al~ 1133 (1133)
+++|.+..+.+.+++|...+++.+|+||++++ ++++.+|++.++|.|||+++++++++++++|++
T Consensus 624 ~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~---~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i 688 (868)
T KOG1934|consen 624 AFRFTIGLTNLTKWNERTRLLETWRKIADEYS---DFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALI 688 (868)
T ss_pred EEEEEEEEeccCCHHHHHHHHHHHHHHHhhcc---CCCeEEecCchHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999984 699999999999999999999999999999863
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-70 Score=634.41 Aligned_cols=727 Identities=24% Similarity=0.362 Sum_probs=552.9
Q ss_pred hHHHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEEE
Q 001173 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELI 444 (1133)
Q Consensus 365 ~~~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqvi 444 (1133)
+....+++++.++|.+|.||-|.+|++++++..+|++|+....+|||.++||+..+++.-+|..|..+.-....-..|++
T Consensus 54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~~lgee~~~~~Q~l 133 (1143)
T KOG1935|consen 54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTPELGEENGLTGQLL 133 (1143)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhccccccchhcCCCceeE
Confidence 57888999999999999999999999999999999999999999999999999999999999998744332333345999
Q ss_pred EEeccCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCC---------------Ccccchhhhh
Q 001173 445 LATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ---------------DCATQSVLQY 509 (1133)
Q Consensus 445 I~~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~---------------~C~v~S~~~y 509 (1133)
|+++. .+|.|||+++.|...+++-.++....+..-++.+++.|+|+||..+ .|.+..|+++
T Consensus 134 IQTp~----~eg~niL~~eaLl~Hle~~~~as~v~V~ly~~~W~L~diC~kp~~ps~e~g~i~~ii~kliPCiiITPlDC 209 (1143)
T KOG1935|consen 134 IQTPS----FEGANILTPEALLQHLELMLEASTVEVSLYNETWTLSDICFKPGGPSFESGYIEQILDKLIPCIIITPLDC 209 (1143)
T ss_pred EECCC----cCCcccCChHHHHHHHHHHHhhheeEEEEecCcccHhHhhcCCCCCccccchHHHHHHHhcCeeEecchhh
Confidence 98753 2567899999999999999999887765558899999999998651 7999999988
Q ss_pred hhcCCC-----------------CCCCcCcccch------------------------hhhccccCCccccccc-----c
Q 001173 510 FKMDPK-----------------NFDDFGGVEHV------------------------KYCFQHYTSTESCMSA-----F 543 (1133)
Q Consensus 510 f~~~~~-----------------~~~~~~~~~~l------------------------~~~~~~~~~~~~cl~~-----~ 543 (1133)
|....+ ++++....+++ +.|++. .+++|.++ +
T Consensus 210 fWeGakllgp~a~~~g~p~l~Wtnl~P~~vi~e~~~~f~l~~~~~~~~rA~ig~gYmdrPCl~P--ldp~CP~sApn~~s 287 (1143)
T KOG1935|consen 210 FWEGAKLLGPNAYLPGLPPLRWTNLNPTSVIEELGTLFDLESIEEFFERAGIGHGYMDRPCLNP--LDPECPPSAPNKNS 287 (1143)
T ss_pred hcccccccCcceeccCCCCcccccCCHHHHHHHHhhhcCcchHHHHHHHhccCccccCCCCCCC--CCCCCCCCCccccC
Confidence 753221 11110000111 123221 12234332 1
Q ss_pred CCCCCC--------------------CccCCCcCC---CcccceeEEEEEEEeccc------------ccccccc----h
Q 001173 544 KGPLDP--------------------STALGGFSG---NNYSEASAFVVTYPVNNA------------VDREGNE----T 584 (1133)
Q Consensus 544 g~Pl~~--------------------~~~lGG~~~---~~~~~A~Alvlt~~l~n~------------~~~~~~~----~ 584 (1133)
.+|.+- .+++||... ++..+|+|++-+|.+... ....++. .
T Consensus 288 ~q~pd~a~~ltGGC~Gfa~k~mhWpEelIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a~ 367 (1143)
T KOG1935|consen 288 PQPPDYAAELTGGCHGFASKVMHWPEELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKAA 367 (1143)
T ss_pred CCCCCHHHHhcCCcchhhhhhcCCcHHHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHHH
Confidence 122221 145666543 346788888766554210 0001122 3
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCccccccc
Q 001173 585 KKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISS 664 (1133)
Q Consensus 585 ~~a~~WE~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~S 664 (1133)
+...+|++.|.+.+.+.+. ++.-+++-.++.++.|.+++.+.-....++++|++|++|..+++.||. +.++|
T Consensus 368 ~vl~awQrnf~~~~~~~~~----~~~~~ih~fsStsldDiL~~Fs~~s~~~iv~gy~lm~~ya~~t~lr~~----~~~~s 439 (1143)
T KOG1935|consen 368 EVLQAWQRNFTKRVYQHLA----NERRQIHPFSSTSLDDILEEFSQFSAISIVIGYLLMVAYACLTQLRWW----DAVQS 439 (1143)
T ss_pred HHHHHHHHHHHHHHHHHhh----hhcceecccccccHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhh----hhhcc
Confidence 4457899999998877653 256678877888999999999999999999999999999999988843 35899
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHH
Q 001173 665 KVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPS 744 (1133)
Q Consensus 665 k~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~s 744 (1133)
...+|++||+.|.+|+++++|+..++||.+|..++.|+|||.|||||||+|.+.|+|++..+. +++++..|+++|+|
T Consensus 440 q~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~---~~~~~~~lk~tG~S 516 (1143)
T KOG1935|consen 440 QGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL---HEEMGELLKETGMS 516 (1143)
T ss_pred ccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh---HHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999999999997654 89999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCC----
Q 001173 745 ITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS---- 820 (1133)
Q Consensus 745 i~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~---- 820 (1133)
|++||+.++++|+++++.|+|++|.||+.+|+-+.++|+..+++|||++++|.||++.+|.|++||....++....
T Consensus 517 vl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~~r~Di~cc~~~~p~~~~~~~~p 596 (1143)
T KOG1935|consen 517 VLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKAGRRDIFCCFRGNPEMATSQSVP 596 (1143)
T ss_pred hhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeEeccCCcccCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753321110
Q ss_pred -----C---------CC--------CCCCCcchHHHHHHHHhhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccc
Q 001173 821 -----D---------KG--------IGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK 878 (1133)
Q Consensus 821 -----~---------~~--------~~~~~~~~l~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~ 878 (1133)
. .+ .......-+..|.+++|+|||+|+.+|++|++.|.+++++|+||+++.+.|+|..
T Consensus 597 ~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg~~allg~slyg~t~~~~GLel~ 676 (1143)
T KOG1935|consen 597 SNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVGFLALLGASLYGMTRSTDGLELT 676 (1143)
T ss_pred cccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHHHHHHHHhhhhheeeecccchhh
Confidence 0 00 0011123478899999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHhHHHHHHHhhcCCCCCEEEEEec-CCCCChhHhhhhhccccccCcchHHHHHHHhhcCCCCccccCC----
Q 001173 879 IVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP---- 953 (1133)
Q Consensus 879 ~~lP~dSyl~~y~~~~~~~f~~g~pvy~Vv~~-~dy~~~~~~q~~~c~~~~C~~~sl~~~l~~~~~~~~~s~i~~~---- 953 (1133)
+.+|+++...++.++.++||+.+ |+|.|+++ .||.+.+++.. .+-+ .+.+..|+.++
T Consensus 677 DvvP~~t~~~~FL~Aq~kyFsfY-~m~aVtqg~~dyp~qQ~ll~-----------dyh~------sf~s~k~vik~~n~~ 738 (1143)
T KOG1935|consen 677 DVVPEHTAEAAFLRAQDKYFSFY-PMFAVTQGPFDYPHQQQLLD-----------DYHQ------SFGSSKYVIKNENEQ 738 (1143)
T ss_pred hcCCCCCcHHHHHHHHhhhcccc-hhheeecCCCCcccHHHHHH-----------HHHH------HhccCceeecCCCCC
Confidence 99999999999999999999864 99999997 99987643211 1222 23344555443
Q ss_pred -CcchHHHHHhhhccc--ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccc-----CCCcccccCCCC-CCCCChh
Q 001173 954 -AASWLDDFLVWISPE--AFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCK-----DCTTCFHHSDLL-KDRPSTI 1024 (1133)
Q Consensus 954 -~~sWlddf~~wl~~~--~~~ccr~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~-----~c~~c~~~~~~~-~~~p~~~ 1024 (1133)
...||.-|.+||..- .++- ...++.+-....-+ .+.+.+..+..+.|. +|..-..+.+++ .|+++++
T Consensus 739 l~~~Wl~~~r~WL~~lq~~fde--d~a~G~~~~~~~v~--n~S~d~~lA~kL~~qtG~~~~~~~~l~k~rlVd~giInp~ 814 (1143)
T KOG1935|consen 739 LPKYWLHLFRDWLQSLQRAFDE--DWAKGRFTLTSGVS--NGSEDARLAYKLLCQTGSLDNDAGRLGKIRLVDAGIINPE 814 (1143)
T ss_pred CchHHHHHHHHHHHHHHHHHHH--HHhcCccccccCCC--CCChHHHHHHHHHHhcCCccchhHhhhhhhhhhccccCHH
Confidence 268999999999861 1111 01112221100000 011112222222221 233333344443 5889999
Q ss_pred hHHhhhHHhhccCCCccccCCC-----CCCcccccccc--CCCCceEEEEEEEEeccCCCChHHHHHHHHHHHHHHHhhc
Q 001173 1025 QFKEKLPWFLNALPSASCAKGG-----HGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVS 1097 (1133)
Q Consensus 1025 ~F~~~L~~fl~~~p~~~C~~gg-----~~~y~~~v~~~--~~~~~~I~as~F~~~~~~l~~~~d~i~a~~~~r~ia~~~~ 1097 (1133)
.||+||..|++.+|-..-++++ +..|..+.+.. +....++..++|.+|.+.|.+..|+++++++.|.++++++
T Consensus 815 ~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~gL~dTa~Ivk~I~~iR~~c~~~~ 894 (1143)
T KOG1935|consen 815 AFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPFYLNGLTDTADIVKAIESIRASCEEYT 894 (1143)
T ss_pred HHHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCchHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 9999999999887765444432 22233332211 1234567888999999999999999999999999999998
Q ss_pred ccCCCceeeccccchhhhhHHHHHHHHHHHHHHH
Q 001173 1098 DSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIA 1131 (1133)
Q Consensus 1098 ~~~~~~vf~ys~~yvf~eQYl~I~~~t~~~l~~a 1131 (1133)
..|+..||-.+.|+|||||++...+.++.|.+-
T Consensus 895 -s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIi 927 (1143)
T KOG1935|consen 895 -SLGLPNYPSGIPFTFWEQYLTLRGNLLQAICII 927 (1143)
T ss_pred -cCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998887763
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=7.3e-35 Score=354.14 Aligned_cols=448 Identities=14% Similarity=0.244 Sum_probs=332.5
Q ss_pred HHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEEeccCCCC
Q 001173 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTH 453 (1133)
Q Consensus 374 F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~~~~~~~~ 453 (1133)
|+++++++.+||+.++++.+++++++++|+.+++++++.++ +.|++++..+.++.++++|| ...+.+.|..
T Consensus 2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~~~~-~~~~d~~~~k~y~~~~~~f~--~~~~~i~v~i------ 72 (727)
T COG1033 2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTET-FLPKDNEEYKNYDRLYKEFG--SGTSLIVVVI------ 72 (727)
T ss_pred hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCCccc-cCCCchHHHHHHHHHHHhhC--CCCceEEEEE------
Confidence 78999999999999999999999999999999999999554 57999999999999999998 2334455554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhcC-CCCCCCcCcccchhhhccc
Q 001173 454 GNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMD-PKNFDDFGGVEHVKYCFQH 532 (1133)
Q Consensus 454 ~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~-~~~~~~~~~~~~l~~~~~~ 532 (1133)
++.|+++++.++.++++++++++++.+. + +.||..++... ...+.+.. +....-..
T Consensus 73 -e~~dv~~~e~~~~~~~l~~~l~~i~gV~--~-----------------v~Spa~~~~~~~~g~iP~~~--~~i~~~~~- 129 (727)
T COG1033 73 -EGDDVFSPEVLEALDSLEERLEEIPGVS--S-----------------VFSPADLLRQVGYGRIPDSD--SKISEVIE- 129 (727)
T ss_pred -eCCCCCCHHHHHHHHHHHHHHhcCCCce--e-----------------ccCHHHHhhhccCCCCCCch--hhhHHHHh-
Confidence 2346999999999999999999986431 1 12444444332 11121100 01111000
Q ss_pred cCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccCCCCeE
Q 001173 533 YTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLT 612 (1133)
Q Consensus 533 ~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~~~~l~ 612 (1133)
. ...+ .. + ++.+ .++...+...+ +.. . ++..+..++......-+++..
T Consensus 130 ------------~---~~~l---~~-d---~~~~-~i~i~~~~~~~----~~~----~-~~i~~~~~~~~e~~~~~~~~~ 177 (727)
T COG1033 130 ------------S---NSLL---SP-D---NTHT-LIIIKLESDKN----DAQ----K-EEIYEEIERIIEIAKFPSGVK 177 (727)
T ss_pred ------------h---hccc---CC-c---ccce-EEEEecCcchh----hHH----H-HHHHHhhhhhhhhhcCCCCCe
Confidence 0 0000 00 1 1122 23444332111 000 0 111111111111011355888
Q ss_pred EEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001173 613 LAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (1133)
Q Consensus 613 v~f~~e~sl~dEl~~~s~~d~~~l-~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~G 691 (1133)
.+.+|+..+.+.+.+....|+..+ .++.++|++.+.+.+++++ -++++++++++|++|++|+|+|+|
T Consensus 178 ~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~~------------~~llpL~~~l~sv~~tlG~m~llG 245 (727)
T COG1033 178 LYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSVR------------RALLPLIIVLVSVLWTLGAMGLLG 245 (727)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888765 5677888888877777752 269999999999999999999999
Q ss_pred eeecchhhhHHHHHhhhccccceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHH
Q 001173 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVF 770 (1133)
Q Consensus 692 i~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F 770 (1133)
+|++. ++...|.+++|||+||++|++|+|.+++ .+.+.+||+.+|++++|++++++++||++||+++.++.+|++++|
T Consensus 246 ~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~ 324 (727)
T COG1033 246 IPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEF 324 (727)
T ss_pred CCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99997 7889999999999999999999999985 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhhhhccccee
Q 001173 771 SMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVK 850 (1133)
Q Consensus 771 ~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap~l~~~~~k 850 (1133)
|+.+.+||+++++..+++.|+++.+..+..+ ++. +.+ + .+.+.+...+.+ .+.+..+++
T Consensus 325 Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~-~~~------~~k----~-------~~~~~~~~~l~~-i~~~~~~~~-- 383 (727)
T COG1033 325 GILLSIGIILAFLSSLTVLPALLILIPKGRK-KRE------EKK----D-------SKKGKLEKRLSK-IAKIIARHP-- 383 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHhhh-hhh------hcc----c-------ccchhHHHHHHH-HHHHhHhhh--
Confidence 9999999999999999999998887655433 110 000 0 011222232332 245566654
Q ss_pred ehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCCCCCEEEEEecCCCCChhHh
Q 001173 851 IAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQ 919 (1133)
Q Consensus 851 ~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~g~pvy~Vv~~~dy~~~~~~ 919 (1133)
+.++++.+++.+++.||..+++.++|.++++|+|++..+.++.++++|++..+++++++.-|-.|++..
T Consensus 384 ~~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~~l 452 (727)
T COG1033 384 VTVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPEVL 452 (727)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChHHH
Confidence 456777788899999999999999999999999999999999999999988999999997666777644
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=2.4e-33 Score=354.77 Aligned_cols=445 Identities=15% Similarity=0.169 Sum_probs=318.5
Q ss_pred ccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEEeccCCCCCCCCCCCCH
Q 001173 383 RNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTE 462 (1133)
Q Consensus 383 r~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~~~~~~~~~~g~nvl~~ 462 (1133)
||||.++++.+++++++++|+.++++++|+++ |.|+|+|.++..+.++++||.. ..++.+... +++++++
T Consensus 2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~~-~~~~d~~~~~~~~~~~~~fg~~--~~~~~v~v~-------~~~~~~~ 71 (719)
T TIGR00921 2 RFRTAIILVFLALLILSAYGAQHLNVESDTEK-QLPKDFESYKWYHVLQREFGTS--TKTLLVVIE-------GDDVTRK 71 (719)
T ss_pred CCchhhHHHHHHHHHHHHHhcccceeccChhh-hCCCCCHHHHHHHHHHHHHCCC--CeEEEEEEE-------eCCCCCH
Confidence 79999999999999999999999999999875 5799999999999999999832 223333321 2469999
Q ss_pred HHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhcCCC--CCCCcCcccchhhhccccCCccccc
Q 001173 463 SNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPK--NFDDFGGVEHVKYCFQHYTSTESCM 540 (1133)
Q Consensus 463 e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~--~~~~~~~~~~l~~~~~~~~~~~~cl 540 (1133)
+.++++.++++++++++.. .+..+..| +...-.. .+.++ .+.++.-.+..
T Consensus 72 ~~l~~i~~l~~~l~~~~~V--~~v~s~~~-----------------~~~~~~~~~~~p~~--~~~~~~~~~~~------- 123 (719)
T TIGR00921 72 PVLDYMRRLEQRLREKPYV--TNVRSAAD-----------------IMRQIPGNFPLPVT--MPEVRPLMSEY------- 123 (719)
T ss_pred HHHHHHHHHHHHHhcCCCc--ceeecHHH-----------------HHHHhcCCCcCCCC--HHHHHHHHHhC-------
Confidence 9999999999999986532 22223322 2211000 01100 00111100000
Q ss_pred cccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchh
Q 001173 541 SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESS 620 (1133)
Q Consensus 541 ~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~~~~l~v~f~~e~s 620 (1133)
|..... +...+ .++..+...+++..+ .+.. +...+.+++.+.+...+++++++++|...
T Consensus 124 -----~~~~~~----~~s~d---~~~~~i~v~~~~~~~-----~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~G~~~ 182 (719)
T TIGR00921 124 -----PRSKEM----FLSKD---HTVAIIIVQLKSDAD-----YKQV----VPIYNDVERSLERTNPPSGKFLDVTGSPA 182 (719)
T ss_pred -----cHHHHh----ccCCC---CceEEEEEEecCCCC-----hHHH----HHHHHHHHHHHhccCCCCCcEEEecCcHH
Confidence 100000 11111 233444555543211 1111 11222222222111124578999999988
Q ss_pred HHHHHHhhhchhhHH-HHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhh
Q 001173 621 IEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIM 699 (1133)
Q Consensus 621 l~dEl~~~s~~d~~~-l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~ 699 (1133)
+..++.+....+... +.++++++++.+.+.+|++ ..++++++++++++++++|+++++|++++. ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs~------------~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~ 249 (719)
T TIGR00921 183 INYDIEREFGKDMGTTMAISGILVVLVLLLDFKRW------------WRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TT 249 (719)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HH
Confidence 888887777666554 5677777777777776653 347888999999999999999999999997 67
Q ss_pred hHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 001173 700 EVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778 (1133)
Q Consensus 700 ~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav 778 (1133)
.++|.+++|+|+||++|++++|+++ .++.+.++++.++++++|+++++|++|+++||+++.++++|.+|.||+++++|+
T Consensus 250 ~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv 329 (719)
T TIGR00921 250 LLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGL 329 (719)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 8889999999999999999999987 468899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhhhhcccceeehhHHHHH
Q 001173 779 LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFV 858 (1133)
Q Consensus 779 ~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap~l~~~~~k~~Vl~~f~ 858 (1133)
+++++.++|++||++.+..++.+..+.. ... ...+.+.+.+++.+. +.+..+++. .++++++
T Consensus 330 ~~~~l~~l~~lPall~~~~~~~~~~~~~------~~~---------~~~~~~~~~~~l~~~-~~~~~r~~~--~vl~v~l 391 (719)
T TIGR00921 330 ITAYLLTLLVLPALLQSIDIGREKVKKE------IIA---------IGGKSSEIEEELSKV-LSITVRHPV--PALVAAL 391 (719)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccc------ccc---------ccCcchHHHHHHHHH-HHHHHhCCc--HhHHHHH
Confidence 9999999999999998765543322110 000 001123455666553 566766653 3556677
Q ss_pred HHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCCC-CCEEEEEecCCCCChh
Q 001173 859 AFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKNYNYSSES 917 (1133)
Q Consensus 859 ~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~g-~pvy~Vv~~~dy~~~~ 917 (1133)
+++++++++..+++.+.|..+++|+|++.++.++.++++|++. .|+++|+++.|..+++
T Consensus 392 ll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~~ 451 (719)
T TIGR00921 392 IITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDPE 451 (719)
T ss_pred HHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCHH
Confidence 8888999999999999999999999999999999999999865 6899999876766664
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.97 E-value=9.8e-27 Score=298.94 Aligned_cols=422 Identities=15% Similarity=0.158 Sum_probs=295.7
Q ss_pred ccchHHHHHHHHHHHHHHhhccceEE-eccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEEeccCCCCCCCCCCCC
Q 001173 383 RNPTLVLSLSMALVLLLCLGLIRFEV-ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVT 461 (1133)
Q Consensus 383 r~P~~vlli~lll~~~l~~Gl~~l~~-etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~~~~~~~~~~g~nvl~ 461 (1133)
||||.++++++++++++......+.. ..+...-+.|+++++++..+.++++|++......++++... ++ .++
T Consensus 1 r~~~~vi~~W~~~~~~~~~~~p~l~~~~~~~~~~~~p~~~~s~~a~~~l~~~F~~~~~~~~~~vv~~~------~~-~~~ 73 (910)
T TIGR00833 1 RSAYGIIGVWIATAISLQLLAPLLEDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDPKIILVLES------NE-RLG 73 (910)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCHHHHhhhcCcCCCCCCcHHHHHHHHHHHhcCCCCCCCeEEEEEeC------CC-CCC
Confidence 79999999999998888766655432 12333457899999999999999999876544444444321 11 355
Q ss_pred HHHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCcCcccchhhhccccCCcccccc
Q 001173 462 ESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541 (1133)
Q Consensus 462 ~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~~~~~~~~~~~cl~ 541 (1133)
++..+.+.++.+++++.. .+ +.++..+|..
T Consensus 74 ~~~~~~~~~~~~~l~~~~----~~-----------------V~~v~~~~~~----------------------------- 103 (910)
T TIGR00833 74 DKDYATYDALIAKLRADI----MH-----------------VISVVDFWGP----------------------------- 103 (910)
T ss_pred HHHHHHHHHHHHHHhcCC----CC-----------------ceecccCCCC-----------------------------
Confidence 555566666666655431 00 1111111110
Q ss_pred ccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhH
Q 001173 542 AFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 621 (1133)
Q Consensus 542 ~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl 621 (1133)
|.... +...+ +.++..+...++...+ .....+--+++.+.+++. ..++++++++.|...+
T Consensus 104 ----p~~~~----~~~s~---d~~~~~i~V~~~~~~~-----~~~~~~~v~~v~~~i~~~----~~~~g~~v~vtG~~~~ 163 (910)
T TIGR00833 104 ----PEAAE----GLRSD---DGKATIIIVNLAGEKG-----QKEAQEAINAVRRIVEQT----NAPDGLTVHVTGPLAT 163 (910)
T ss_pred ----hhhHh----hccCC---CCCEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHhc----CCCCCeEEEEeChHHH
Confidence 00000 00001 1123334444432111 111111122333333332 1356899999999888
Q ss_pred HHHHHhhhchhhHH-HHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeee----cc
Q 001173 622 EEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS----TL 696 (1133)
Q Consensus 622 ~dEl~~~s~~d~~~-l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~----~~ 696 (1133)
..++.+....++.. ..++++++++.+.+.+|++ ...+++++.+++++++++|++.++|.+. +.
T Consensus 164 ~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS~------------~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~ 231 (910)
T TIGR00833 164 IADILESGDKDMNRITATTGIIVLIILLLVYRSP------------ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNA 231 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 88887777777665 4567777777777776653 2467888899999999999999999863 33
Q ss_pred hhhhHHHHHhhhccccceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 001173 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1133)
Q Consensus 697 i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aa 775 (1133)
+...+++.+++|+|+||.+|++++|+++. ++.++++++.++++++|++|+++++|++++|+.+.++++|.+|.||+.++
T Consensus 232 ~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a 311 (910)
T TIGR00833 232 QTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALSLARLPSFKTLGVSCA 311 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 33344567889999999999999999974 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhhhhcccceeehhHH
Q 001173 776 LAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVIS 855 (1133)
Q Consensus 776 iav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap~l~~~~~k~~Vl~ 855 (1133)
+||+++++..+|++||++.+.+||.... .+ ......+++++ .+.++.|++. .+++
T Consensus 312 ~gvl~a~l~~ltllPall~l~g~~~~~~---------~~-------------~~~~~~~~~~~-l~~~v~r~p~--~vl~ 366 (910)
T TIGR00833 312 VGVLVALLNAVTLTPALLTLEGREGLMK---------PG-------------RKSKIRFIWRR-LGTAVVRRPW--PILV 366 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC---------Cc-------------ccchHhHHHHH-HHHHHHhccH--HHHH
Confidence 9999999999999999999987653110 00 00112234444 3667777754 4556
Q ss_pred HHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCCC--CCEEEEEec-CCCCChhH
Q 001173 856 LFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKN-YNYSSESR 918 (1133)
Q Consensus 856 ~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~g--~pvy~Vv~~-~dy~~~~~ 918 (1133)
++++++++++++..+++.+.|..+++|+|++.++.++.++++|+.+ .|++++++. .|+++++.
T Consensus 367 v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~~ 432 (910)
T TIGR00833 367 TTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPAL 432 (910)
T ss_pred HHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHHH
Confidence 6778889999999999999999999999999999999999999876 899999995 57777643
No 10
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.96 E-value=7e-27 Score=284.68 Aligned_cols=359 Identities=17% Similarity=0.269 Sum_probs=263.6
Q ss_pred HHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEE
Q 001173 367 QGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILA 446 (1133)
Q Consensus 367 ~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~ 446 (1133)
.+.+...+.+++...+|||+.++++.++++++..+|..+++.++|.++ +.|+|+|+.++.+.++++||+.+.+ .+++.
T Consensus 365 ~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs~~~-~i~~~ 442 (727)
T COG1033 365 KGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGSDPI-TIVLE 442 (727)
T ss_pred chhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCCceE-EEEEE
Confidence 456677899999999999999999999999999999999999999887 6899999999999999999987432 23333
Q ss_pred eccCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhcC-CCCCCCcCcccc
Q 001173 447 TIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMD-PKNFDDFGGVEH 525 (1133)
Q Consensus 447 ~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~-~~~~~~~~~~~~ 525 (1133)
+ .+..+|+.++++.++++++++.... ..+..++ +...-+..+.. +++. +
T Consensus 443 ~---------~d~~dp~~l~~md~l~~~l~~~~~~----V~s~~si----------v~~vk~~~~~~~p~~~------~- 492 (727)
T COG1033 443 A---------EDVRDPEVLRWMDELEEELEKGEEH----VFSASSI----------VDLVKQVNGGIIPDKS------K- 492 (727)
T ss_pred C---------CCCCChHHHHHHHHHHHHHHhccee----eeccchH----------HHHHHHHhcCCCCcch------h-
Confidence 2 2469999999999999999876431 1111111 00011111111 1110 0
Q ss_pred hhhhccccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccc
Q 001173 526 VKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPM 605 (1133)
Q Consensus 526 l~~~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~ 605 (1133)
++...+.. | ....+ ..++...-..+.+.+.... +..+.--+++.+.+++.
T Consensus 493 ~~~i~~~~------------~---~~~~~----~~~s~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~---- 542 (727)
T COG1033 493 IQIILEEL------------P---ESIKK----RYISGDQLNLLGYSLGDTQ-------GELEDVGREILRDIEKE---- 542 (727)
T ss_pred HHHHHHhc------------c---hhHhh----cccCCCceeeeecccccch-------hHHHHHHHHHHHHHHhh----
Confidence 11111100 0 00000 0111111112223222211 11122222333333332
Q ss_pred cCCCCeEEEEccchhHHHHHHhhhchhhH-HHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHH
Q 001173 606 VQSKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSV 684 (1133)
Q Consensus 606 ~~~~~l~v~f~~e~sl~dEl~~~s~~d~~-~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~ 684 (1133)
..+.+++++..|+..+..++++...++.. ..+++++++++.+.+.+|+. .-++.+++++++++.|++
T Consensus 543 ~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~------------~~~i~~iipi~~~v~~~~ 610 (727)
T COG1033 543 NIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSP------------LKAIIPLIPIAIVVGWNF 610 (727)
T ss_pred cCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhch------------HHhHHHHHHHHHHHHHHH
Confidence 24567889999999999999998765544 45778888888888887764 338999999999999999
Q ss_pred HHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCc
Q 001173 685 GFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1133)
Q Consensus 685 Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~ 764 (1133)
|+|+++|+++++ .+..+-.+++|+|+||++|+++||+++++...++|++.+++.++|++++.+++|++.||+++.+|++
T Consensus 611 ~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~ltt~~GF~aLi~S~f 689 (727)
T COG1033 611 GLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASALTTAIGFLALIFSPF 689 (727)
T ss_pred HHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998 6888999999999999999999999987443399999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 765 PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 765 p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
|.+++||+.++++++++++.+++++||+|.+..+|.
T Consensus 690 ~i~snfGll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 690 PIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 999999999999999999999999999999766554
No 11
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.96 E-value=1.4e-28 Score=250.84 Aligned_cols=152 Identities=50% Similarity=0.838 Sum_probs=148.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHH
Q 001173 661 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVE 740 (1133)
Q Consensus 661 ~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~ 740 (1133)
+|+||++|++.+++++++|+++++|++.++|++++++..+++||++++||+||+|+++++|++.+...+.++|+++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999988889999999999999999999999998888889999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 001173 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLK 812 (1133)
Q Consensus 741 ~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~ 812 (1133)
+|++++.+++|++++|++++++++|++|+||+++++++++++++++|+|||+|++|.||.+.+|.|++||+|
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsld~~r~~~~~~~~~~~~~ 152 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSLDLRRLLADRLDCFCCIR 152 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 12
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.96 E-value=5.6e-29 Score=299.85 Aligned_cols=168 Identities=22% Similarity=0.391 Sum_probs=158.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhcc
Q 001173 631 ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 710 (1133)
Q Consensus 631 ~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIG 710 (1133)
.|+.++.++|++||+|+++.|++++. ++||++||++|++++++|+++++|+++++|++++.| .+++|||+|+||
T Consensus 60 ~Dv~iv~isy~vmflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I-~eViPFLvLaIG 133 (886)
T TIGR00920 60 SDVIVMTITRCIAVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTGL-NEALPFFLLLID 133 (886)
T ss_pred cceEEeeHHHHHHHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHhHHHhhhc
Confidence 47888999999999999999999764 899999999999999999999999999999999995 899999999999
Q ss_pred ccceEehHHHHH-HHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 711 VDNMCILVHAVK-RQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 789 (1133)
Q Consensus 711 vD~~f~l~~~~~-~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~f 789 (1133)
+||+|+|.+. + +.....++++||+++|+++||+|++++++++++|++|++++||+||.||+|++++|+++|++|+|||
T Consensus 134 VDnifiLa~~-~~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF 212 (886)
T TIGR00920 134 LSKASALAKF-ALSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFF 212 (886)
T ss_pred hhhHHHHHhh-hhccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999544 5 4457889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccc
Q 001173 790 VALIVFDFLRAEDKRV 805 (1133)
Q Consensus 790 palL~l~~rR~~~~r~ 805 (1133)
+|+|+|..+|+..+|+
T Consensus 213 ~A~LsL~~~le~~~~h 228 (886)
T TIGR00920 213 PACLSLVLELSRSGRE 228 (886)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999877776
No 13
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.93 E-value=3.1e-23 Score=262.83 Aligned_cols=352 Identities=13% Similarity=0.174 Sum_probs=250.5
Q ss_pred HHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEEec
Q 001173 369 YMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 448 (1133)
Q Consensus 369 ~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~~~ 448 (1133)
.++++++++++++.|||+.++++++++++++.+|+.+++.+.|+.++ .|+++++++..+.++++||......++++.
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~-~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~-- 443 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEKF-IPQDLPSLQARKVIESHMGGSHDFATILVK-- 443 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhhc-CCCCcHHHHHHHHHHHHhCCCCcceEEEEE--
Confidence 45677899999999999999999999999999999999999998765 699999999999999999865222234443
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCcCcccchhh
Q 001173 449 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 528 (1133)
Q Consensus 449 ~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~ 528 (1133)
++++.+++.++++.++++++++.... ....+ ..|+.+++..-.....+.. ....
T Consensus 444 -------~~~~~~~~~l~~l~~l~~~l~~~~~v--~~v~~--------------~~si~~~~~~~~~~~~~~~---~~~~ 497 (719)
T TIGR00921 444 -------ADDVRDPELVRFMDELSRDIKATGVA--ARVFG--------------APSIIDLVKEVEGLPAPER---SALE 497 (719)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHhhcccc--CcccC--------------CCCHHHHHHHhcCCCCCCc---hHHH
Confidence 13488999999999999998875321 11110 1123333221100000000 0000
Q ss_pred hccccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccCC
Q 001173 529 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 608 (1133)
Q Consensus 529 ~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~~ 608 (1133)
. ++. ..... .+ .+++ ..+.+...+... ++..+..+ ++.+.+++ ...+
T Consensus 498 ~----------lp~---~~~~~-~i---~~~~------~~v~~~~~~~~~--~~~~~~~~----~~~~~~~~----~~~~ 544 (719)
T TIGR00921 498 P----------IPE---DEEGG-YI---SGGQ------IKVAVIQVQLKQ--GEPKVQGR----KILRDVQH----EHPP 544 (719)
T ss_pred h----------CCH---HHhcc-ee---cCCc------eEEEEEecCCcc--hhHHHHHH----HHHHHHhc----cCCC
Confidence 0 000 00000 00 1111 122222221111 11111112 22222222 1235
Q ss_pred CCeEEEEccchhHHHHHHhhhchhhHH-HHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 609 KNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 609 ~~l~v~f~~e~sl~dEl~~~s~~d~~~-l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
+++++..+|...+..++.+....+... +.++++++++.+.+.+|+. ..++.+++++++++++++|++
T Consensus 545 ~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~------------~~~l~~~i~~~~~~~~~~g~~ 612 (719)
T TIGR00921 545 PGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNP------------IKAVFPLIAIGSGILWAIGLM 612 (719)
T ss_pred CCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 678899999888888888777666544 4667777777777776553 457889999999999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhH
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~v 767 (1133)
+++|++++. .+.++..+++|+||||.+|++++|+++....+.++++.++++++|++++.+++|+++||++++++++|.+
T Consensus 613 ~~~gi~l~~-~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~~~~~ 691 (719)
T TIGR00921 613 GLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIM 691 (719)
T ss_pred HHHcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 999999997 5677888999999999999999999986447899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001173 768 RVFSMFAALAVLLDFLLQITAFVALIVF 795 (1133)
Q Consensus 768 r~F~l~aaiav~~~~l~~lt~fpalL~l 795 (1133)
|.||+.++++++++++..++++||+|.+
T Consensus 692 ~~~g~~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 692 RNFGLVQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999864
No 14
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.93 E-value=1.8e-23 Score=268.77 Aligned_cols=254 Identities=14% Similarity=0.167 Sum_probs=208.5
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l-~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
++++++.+.|...+..+..+....|+... .++++++++.+.+.+|+++ ..+..++++.+++++++|+
T Consensus 246 ~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~------------~~l~~l~~i~~s~~~~~~~ 313 (862)
T TIGR03480 246 DHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPR------------LVFAVLVTLIVGLILTAAF 313 (862)
T ss_pred CCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHH
Confidence 46899999999888888777777777764 6788888888888877642 3577788889999999999
Q ss_pred HhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCch
Q 001173 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1133)
Q Consensus 687 ~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p 765 (1133)
+.++|.+++. ++.+.+.+++|+||||++|++++|+++. .+.+..+++.+++++.|++++++++|+++||+.+.++++|
T Consensus 314 ~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~~ 392 (862)
T TIGR03480 314 ATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYK 392 (862)
T ss_pred HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999997 6788899999999999999999999874 6778999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhhhhc
Q 001173 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 845 (1133)
Q Consensus 766 ~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap~l~ 845 (1133)
.++.||+.+++|++++++..+|++|+++.+..++.+ +. .... +++++ .+.++.
T Consensus 393 ~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~--~~--------------------~~~~----~~~~~-~~~~~~ 445 (862)
T TIGR03480 393 GVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRR--RK--------------------PPGY----ATLAP-LDAFLR 445 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--cc--------------------Cccc----hhHHH-HHHHHH
Confidence 999999999999999999999999999997622211 00 0001 12222 244455
Q ss_pred ccceeehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCCCCC
Q 001173 846 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPP 903 (1133)
Q Consensus 846 ~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~g~p 903 (1133)
+++ ..+++++++++++++++..+++.+.|+.+++|+++...+.++.+.+.+..++.
T Consensus 446 ~~~--~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~ 501 (862)
T TIGR03480 446 RHR--RPVLGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPY 501 (862)
T ss_pred hcc--HHHHHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCC
Confidence 553 34556777888899999999999999999999999999999999888765543
No 15
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.88 E-value=1.1e-20 Score=243.29 Aligned_cols=179 Identities=22% Similarity=0.229 Sum_probs=151.1
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l-~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
.++.+++..|...+..++.+....|+..+ .++++++++.+.+.+|++ ...+..++.+++++.+++|+
T Consensus 721 ~~~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS~------------~~pl~~l~~v~ls~~~s~G~ 788 (910)
T TIGR00833 721 LEPAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRAP------------VAPIVLIGSVALSYLWALGL 788 (910)
T ss_pred CCCCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999888888875 567777777777776553 35788899999999999999
Q ss_pred HhhcCee-----ecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Q 001173 687 FSAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSF 761 (1133)
Q Consensus 687 ~~~~Gi~-----~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~ 761 (1133)
+.|++.+ ++..+..+++.+++|+|+||.+|+++||+++... ..++++.++++++|..|+.+++|++++|+++.+
T Consensus 789 ~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~-g~~~av~~a~~~tg~~I~~a~~~~~~~f~~l~~ 867 (910)
T TIGR00833 789 SVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPA-GNRTGIIRALGSTGGVITAAGLVFAGTMAALAS 867 (910)
T ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhc-CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 9876544 3333334567888999999999999999998633 346899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccc
Q 001173 762 IPMPACRVFSMFAALAVLLD-FLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 762 s~~p~vr~F~l~aaiav~~~-~l~~lt~fpalL~l~~rR 799 (1133)
+++|.++.||+.+++||+++ ++..++++||+|.+.+|+
T Consensus 868 s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~ 906 (910)
T TIGR00833 868 AQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRW 906 (910)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999995 666688999999998865
No 16
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.88 E-value=1.2e-20 Score=217.57 Aligned_cols=194 Identities=22% Similarity=0.379 Sum_probs=164.4
Q ss_pred HHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHhhcCCCCCcccccccchhhh
Q 001173 591 EKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLG 669 (1133)
Q Consensus 591 E~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l-~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lg 669 (1133)
-+++.+.+++.. ..++.+++..|...+..++.+....|...+ .++++++++.+.+.+|++ ..+
T Consensus 107 ~~~i~~~i~~~~----~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~------------~~~ 170 (333)
T PF03176_consen 107 VKAIRDIIKEAE----KPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSV------------RAA 170 (333)
T ss_pred HHHHHHHHHHhh----ccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHH------------HHH
Confidence 344555555432 467899999999999999998888887765 567777777777776653 457
Q ss_pred HHHHHHHHHHHHHHHHH----HhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHH
Q 001173 670 LSGVVLVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPS 744 (1133)
Q Consensus 670 l~gvl~v~lsv~~s~Gl----~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~s 744 (1133)
+.+++++++++++++|+ +.++|.+++.++..++..+++|+|+||.+|++++|+++. .+.+.++++.++++++|.+
T Consensus 171 l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~ 250 (333)
T PF03176_consen 171 LLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRA 250 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCch
Confidence 88999999999999999 345677887644555667889999999999999999974 6788999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 745 ITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 745 i~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
++++++|+++||+++.++++|++|.||+.+++|+++++++.+|++||+|.+.+++.
T Consensus 251 i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 251 ILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 99999999999999999999999999999999999999999999999999988764
No 17
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.79 E-value=2.5e-17 Score=211.89 Aligned_cols=428 Identities=14% Similarity=0.172 Sum_probs=284.0
Q ss_pred HHHHchhhhccchHHHHHHHHHHHHHHhhccceEE--eccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEEeccCC
Q 001173 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEV--ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDT 451 (1133)
Q Consensus 374 F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~--etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~~~~~~ 451 (1133)
+.++|++++||||.++++++++++++..-+..+.. ..+... =.|++.++....+...+.|....+-.-++++..
T Consensus 3 ~~~~~r~i~r~~~~vi~~Wi~~~~~~~~~~p~l~~~~~~~~~~-~~p~~~~s~~a~~~~~~~f~~~~~~~~~ivv~~--- 78 (937)
T COG2409 3 LFPIGRFIRRFAWAVILAWIALAVVLNLFAPTLEALGQDKSVA-LLPDDAPSLVAMKLIGQAFNESDSSSAAIVVLE--- 78 (937)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcccc-cCCCCchHHHHHHHHhhhccCCCCCceEEEEEc---
Confidence 34599999999999999999999998887776543 233332 358888888777766666665333333344431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCcCcccchhhhcc
Q 001173 452 THGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQ 531 (1133)
Q Consensus 452 ~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~~~~ 531 (1133)
++.-++++-.....++.+.+++.+. +...+.|.-..| .....
T Consensus 79 ----~~~~l~~~d~~~~~~~v~~L~~~~~----~~~~~~d~~~~~------------------~~~~~------------ 120 (937)
T COG2409 79 ----ADEGLTDADHALYDKLVDALRADTR----DVNVVQDFVSDP------------------LTAEL------------ 120 (937)
T ss_pred ----CCCCCChhHHHHHHHHHHHHhhccc----ccceecccCCCc------------------ccccc------------
Confidence 1224555555555566666666532 111222211000 00000
Q ss_pred ccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccCCCCe
Q 001173 532 HYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNL 611 (1133)
Q Consensus 532 ~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~~~~l 611 (1133)
..+ .++ ..+.+...+..-.+ ..+..+. .+...+.+++ ...++++
T Consensus 121 -~~s---------------------~d~--~a~~~~~~~~~~~~-------~~~~~es-~~~v~~~v~~----~~~~~~~ 164 (937)
T COG2409 121 -AQS---------------------KDG--KAAYAQLTLAGYLG-------VTQANES-VEAVRSIVRQ----LPAPDGL 164 (937)
T ss_pred -ccC---------------------cch--hhhhcceeeeeccC-------cchhHHH-HHHHHHHhcc----cCCCCce
Confidence 000 000 00000000100000 0111111 1222222222 1245678
Q ss_pred EEEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 001173 612 TLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 690 (1133)
Q Consensus 612 ~v~f~~e~sl~dEl~~~s~~d~~~l-~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~ 690 (1133)
+.+-.|.....+.+...+..+.... .++..++++++.+.+|+ +..++++++.+.+++..+.|+..++
T Consensus 165 ~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s------------~i~a~lpL~t~~~s~~~a~~iv~~l 232 (937)
T COG2409 165 TAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRS------------VITAFLPLITVGLSLLVAQGIVALL 232 (937)
T ss_pred EEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777666666666665555543 45555666665555544 3347889999999999999998854
Q ss_pred C----eeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCch
Q 001173 691 G----VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1133)
Q Consensus 691 G----i~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p 765 (1133)
. ..++.+...++..+.+|+|+||.+.++.||+++ +.+.+.+++++++++.+|..++.++.|.+++|..+.+.++|
T Consensus 233 ~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg~tV~~a~~~l~~a~~~ 312 (937)
T COG2409 233 AYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSGLTVAIALLGLSFARLP 312 (937)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhhhHHHHHHHHHHhcccc
Confidence 3 333334566777899999999999999999987 46689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhhhhc
Q 001173 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 845 (1133)
Q Consensus 766 ~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap~l~ 845 (1133)
..+.+++.++++|+++.+..+|+.||+|++.+||...... .. .. -.++|++ .+.++.
T Consensus 313 ~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~~----------~~--------~~----~~~~w~~-~~~~v~ 369 (937)
T COG2409 313 FLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPDP----------KR--------AS----ESRFWRR-VGTLVV 369 (937)
T ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCCc----------ch--------hh----hcchhhh-heeEEe
Confidence 9999999999999999999999999999999988632200 00 01 1234444 367788
Q ss_pred ccceeehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCCC--CCEEEEEec-CCCCCh
Q 001173 846 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKN-YNYSSE 916 (1133)
Q Consensus 846 ~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~g--~pvy~Vv~~-~dy~~~ 916 (1133)
++|..+ ++..++.+++.....+.++.|.+.+..+|.+.+.++.|+.+++||+.| .|++++++. .|.+++
T Consensus 370 ~~P~~~--l~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~~ 441 (937)
T COG2409 370 RRPLAI--LVASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRTP 441 (937)
T ss_pred eccHHH--HHHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcCh
Confidence 887544 344455566666778899999999999999999999999999999754 699999995 665544
No 18
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.74 E-value=1.4e-16 Score=205.19 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=127.3
Q ss_pred cchhHHHHHHhhhchhhH-HHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeec
Q 001173 617 SESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKST 695 (1133)
Q Consensus 617 ~e~sl~dEl~~~s~~d~~-~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~ 695 (1133)
|...+..+.......+.. .+.++++++++.+.+.+|++ ..++..++++++++++++|+|+++|++++
T Consensus 698 G~~~~~~~~~~~i~~~~~~~~~~a~~~i~lll~~~frs~------------~~~l~~l~P~~l~~~~~~g~m~~~gi~l~ 765 (862)
T TIGR03480 698 GAPVSILESGDTVVGAFLQAFIYALVAITVLLLLTLRRV------------RDVLLVLAPLLLAGLLTVAAMVLLGIPFN 765 (862)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH------------HHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 444443333333333333 35667777777777777664 24788899999999999999999999999
Q ss_pred chhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 001173 696 LIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1133)
Q Consensus 696 ~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aa 775 (1133)
. .+.++..|++||||||++|++++|+++..... ...+++|.+|++|++|+++||++++++++|++++||+.++
T Consensus 766 ~-~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~~------~~~~~~g~ai~~saltt~~gf~~l~~s~~~~~~~~G~~~~ 838 (862)
T TIGR03480 766 F-ANIIALPLLLGLGVDFGIYMVHRWRNGVDSGN------LLQSSTARAVFFSALTTATAFGSLAVSSHPGTASMGILLS 838 (862)
T ss_pred H-HHHHHHHHHHhhhhhhHHHHHHHHHHhccchh------HHHhhhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 7 56777778899999999999999988753111 1124689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001173 776 LAVLLDFLLQITAFVALI 793 (1133)
Q Consensus 776 iav~~~~l~~lt~fpalL 793 (1133)
+|++++++..++++||+|
T Consensus 839 ~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 839 LGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999988
No 19
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.72 E-value=1e-14 Score=186.73 Aligned_cols=373 Identities=17% Similarity=0.162 Sum_probs=231.6
Q ss_pred HHHHHHHchhhhccchHH--HHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEEec
Q 001173 371 SNFYRKYGKWVARNPTLV--LSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 448 (1133)
Q Consensus 371 ~~~F~~lG~~var~P~~v--lli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~~~ 448 (1133)
+.+..+++.++.+.+..+ +++.++..++..+|..+++..-|+.++ +|+||+..+-.+..++.|.+.+..-.+++..
T Consensus 422 ~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld~~~l-~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~- 499 (798)
T PF02460_consen 422 RFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLDPEKL-FPDDSYLQKFFRLQEKYFFSYGPPVYVVVNN- 499 (798)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCChhhc-cCCCChhHHHHHHHHHHhhccCceEEEEecC-
Confidence 344457888998886554 444455556677899999999999876 6999999887777778776654332333321
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCcCcccchhh
Q 001173 449 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 528 (1133)
Q Consensus 449 ~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~ 528 (1133)
.+|.-+++..+++.++.+++++.+...+.+. ...-+.+-.+|.+.......+++..+....
T Consensus 500 -------~~d~~~~~~~~~l~~lv~~fe~~~~~~~~~~------------t~~WL~~y~~~l~~~~~~~~~~~~~~~~~~ 560 (798)
T PF02460_consen 500 -------PPDYSDPENQDRLNSLVQEFENSPYSIGNNS------------TSFWLRDYLNFLNSINSSFQDDNDKEFFYN 560 (798)
T ss_pred -------CCCccchHHHHHHHHHHHHHhcccccccccc------------chhhHHHHHHHHhhccccccccccceeeec
Confidence 2468889999999999998887643211110 011122222333220011111000000000
Q ss_pred hccccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccCC
Q 001173 529 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 608 (1133)
Q Consensus 529 ~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~~ 608 (1133)
..+.... .+. +........+. -..++-..-.+.+++...++..+ .+...++-+++.+.+++ .
T Consensus 561 ~l~~FL~----~~~-~~~~~~di~~~-~~~~~~~~I~a~rf~~~~~~~~~-----~~~~~~~~~~~R~i~~~-------~ 622 (798)
T PF02460_consen 561 LLPEFLN----SPE-YRHYSNDIKFD-DSDNDTTQISAFRFTTQLKNLSD-----WSDRIEAMKDWRQIADK-------Y 622 (798)
T ss_pred cchhhhc----ccc-ccccccccccc-cccCCccceeeEEEEEEccCCCC-----HHHHHHHHHHHHHhhhc-------c
Confidence 0000000 000 00111111111 00112223355666665554321 11112222233222222 1
Q ss_pred CCeEEE-EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 609 KNLTLA-FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 609 ~~l~v~-f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
+.+++. |+..-...|.........+..++++.+.|++...+.+.+. ..++..++.++.-.+..+|+|
T Consensus 623 ~~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~------------~~~~~~~~~i~~i~~~v~G~m 690 (798)
T PF02460_consen 623 SDFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNP------------RSSLIVTLSILSIDVGVIGFM 690 (798)
T ss_pred eecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccc------------hhHHHHHHHHHHHHHHHHHhh
Confidence 223333 3333334445444444444556778888887766665543 235555566666666788999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhH
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~v 767 (1133)
.+.|+++++ ++.+.-.+.+|++||++.|+.++|.+.... ++.+|+.+||+++|.|++.++++|++|.+.+++++...+
T Consensus 691 ~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~ 768 (798)
T PF02460_consen 691 SLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIF 768 (798)
T ss_pred hccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999998 577777888899999999999999886543 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001173 768 RVFSMFAALAVLLDFLLQITAFVALIVFD 796 (1133)
Q Consensus 768 r~F~l~aaiav~~~~l~~lt~fpalL~l~ 796 (1133)
+.|.-...+.+++.++-.+.++|++|++.
T Consensus 769 ~~ff~~~~l~~~~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 769 RVFFKTVFLVIIFGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999863
No 20
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.53 E-value=1.4e-12 Score=170.54 Aligned_cols=245 Identities=15% Similarity=0.134 Sum_probs=170.2
Q ss_pred CCCeEEEEccch--hHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~v~f~~e~--sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
++++++.+.++. .+++.++.. ...+.++++++++.+.+.|++++ .+++..+++.++++++++
T Consensus 312 P~g~~~~~~~d~~~~i~~~~~~~----~~~~~~~~~lv~~vl~l~l~~~r------------~~li~~~~ip~s~~~~~~ 375 (1025)
T PRK10614 312 PAAIDLQIAQDRSPTIRASLEEV----EQTLAISVALVILVVFLFLRSGR------------ATLIPAVAVPVSLIGTFA 375 (1025)
T ss_pred CCCcEEEEeecCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 567777766543 333333332 22356666666666666676642 267777888999999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCc
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~ 764 (1133)
++.++|+++|. ++.....+.+|+.|||++++++.+++. ..+.++.+++.++.++++.+++.|++|++++|+-.++.+-
T Consensus 376 ~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~stltti~~f~Pl~~~~g 454 (1025)
T PRK10614 376 AMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGG 454 (1025)
T ss_pred HHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999997 566666778899999999999877665 4678899999999999999999999999999998877654
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhh
Q 001173 765 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 841 (1133)
Q Consensus 765 ---p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~ya 841 (1133)
..++.|++..++++++++++.+|+.|+++++..++....+. + .. ......+. .+.+.|.
T Consensus 455 ~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~--------~-~~--------~~~~~~~~-~l~~~Y~ 516 (1025)
T PRK10614 455 LPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQ--------K-RL--------RGFGRMLV-ALQQGYG 516 (1025)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc--------c-ch--------hhHHHHHH-HHHHHHH
Confidence 46999999999999999999999999999875442210000 0 00 00001111 1223343
Q ss_pred ---hhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccc---------cCCCCCchHhH
Q 001173 842 ---TILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG 889 (1133)
Q Consensus 842 ---p~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~---------~~lP~dSyl~~ 889 (1133)
.++++++ ..+++++++++++++++..++...+-+. -.+|.++.+.+
T Consensus 517 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~ 574 (1025)
T PRK10614 517 RSLKWVLNHT--RWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQA 574 (1025)
T ss_pred HHHHHHHhch--HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHH
Confidence 3555553 3456666777888888777666555442 23466665543
No 21
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.52 E-value=7.9e-12 Score=160.85 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhcccc
Q 001173 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1133)
Q Consensus 633 ~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD 712 (1133)
+..+.++.++||+.+++.+++. +.+++.++++++.++..+|+|++.|+++++ ++.+.-.+.+|+|||
T Consensus 968 ~~~l~~al~~~fvV~~lll~~~------------~~a~iv~l~v~~i~v~v~G~M~lwgI~Lna-VS~vnLimsIGisVe 1034 (1145)
T TIGR00918 968 LLSISVVLACTFLVCALLLLNP------------WTAGLIVLVLALMTVELFGMMGLLGIKLSA-IPVVILIASVGIGVE 1034 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHcch------------HHHHHHHHHHHHHHHHHHHHHHHHcCCccH-HHHHHHHHHHhhhhh
Confidence 3345566677777777776643 336667788888999999999999999997 677777888999999
Q ss_pred ceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 713 NMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP-ACRVFSMFAALAVLLDFLLQITAFVA 791 (1133)
Q Consensus 713 ~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p-~vr~F~l~aaiav~~~~l~~lt~fpa 791 (1133)
++.|+.++|... ..++++|+.+||+++|.+++.+++|+++|.++++++++. .++.|+.+.++.|+++++-.++++|.
T Consensus 1035 fsaHI~~~F~~~--~~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPV 1112 (1145)
T TIGR00918 1035 FTVHIALGFLTA--IGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPV 1112 (1145)
T ss_pred hhHHHHHHHHhc--CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999854 345799999999999999999999999999999999987 78999999999999999999999999
Q ss_pred HHhhhccccc
Q 001173 792 LIVFDFLRAE 801 (1133)
Q Consensus 792 lL~l~~rR~~ 801 (1133)
+|++.+.+.+
T Consensus 1113 LLS~~Gp~~~ 1122 (1145)
T TIGR00918 1113 LLSMFGPEPE 1122 (1145)
T ss_pred HHHhcCCccc
Confidence 9999887654
No 22
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.49 E-value=2.4e-11 Score=152.60 Aligned_cols=374 Identities=16% Similarity=0.166 Sum_probs=233.1
Q ss_pred HHHHHHchhhhccchHH--HHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcceEEEEEEecc
Q 001173 372 NFYRKYGKWVARNPTLV--LSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449 (1133)
Q Consensus 372 ~~F~~lG~~var~P~~v--lli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~eqviI~~~~ 449 (1133)
.+.++++.|+.+....+ +++.++-.+++.+|..+++..-||.+| ++.||+..+-.+..++.|-+.+..-+++|..
T Consensus 456 ~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl-~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~n-- 532 (868)
T KOG1934|consen 456 FFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKL-LPEDSPLVKSLRLQEKYFWEYGQQVAVFVNN-- 532 (868)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHc-ccccCcchHHHHHHHHHhhccCceEEEEEcC--
Confidence 55567788877654443 334444466788999999999999999 5889998887777777776654333455442
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCCCCcccchhhhhhhc-CCCCCC-CcCcccchh
Q 001173 450 DTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKM-DPKNFD-DFGGVEHVK 527 (1133)
Q Consensus 450 ~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~-~~~~~~-~~~~~~~l~ 527 (1133)
-+|+-+++.++.+.++-++.+..+... |+.. ..+-+.+-.+|... +....+ +..+..++.
T Consensus 533 ------p~dl~~~~~~~~~~~~~~~fE~~~~~~-G~~s-----------T~~wlr~y~~~~~~~~~~~~~~~~~~~~~~~ 594 (868)
T KOG1934|consen 533 ------PPDLSNPENRDNLNELVSEFESTPYSM-GRES-----------TKFWLREYLNFLFEKNAELEDNDDEFYDHLY 594 (868)
T ss_pred ------CccCCCHHHHHHHHHHHHHHhcCCccc-Cccc-----------chhHHHHHHHHHhhhcccccCCCcchhhhhH
Confidence 257888999999999999988775321 2111 11122222232111 111111 111111111
Q ss_pred hhccccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHHHHHHHHHHhhcccccC
Q 001173 528 YCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQ 607 (1133)
Q Consensus 528 ~~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE~~f~~~v~~~~~~~~~ 607 (1133)
.-+.. .+. ..+......++.-+ ++-..-.+.+.++..++..+- .+..+..+.|++.. ++
T Consensus 595 ~~fl~-------~~~-~~~~~~di~~~~~~-~~~~~i~~f~f~~~~~~~~~~-~~~~~~~~~~R~ia----~~------- 653 (868)
T KOG1934|consen 595 ESFLK-------SPE-FSFWRNDIVFDNKS-DEETIIFAFRFTIGLTNLTKW-NERTRLLETWRKIA----DE------- 653 (868)
T ss_pred HHHhc-------ccc-cccCccceEeccCC-CCCceEEEEEEEEEEeccCCH-HHHHHHHHHHHHHH----hh-------
Confidence 10000 000 11111222222111 111122455566666653221 11223334444322 22
Q ss_pred CCCeEEEEccc-hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSE-SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 608 ~~~l~v~f~~e-~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
.+.+.++...+ ....|.+.......+..++++++.|++...+.+.+. ...+...++++.--+..+|+
T Consensus 654 ~~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~~------------~~~~~it~si~SI~~GV~G~ 721 (868)
T KOG1934|consen 654 YSDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPNP------------LCVFWITLSIVSINIGVFGF 721 (868)
T ss_pred ccCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHhheeehHhhh
Confidence 23444443333 345666666655566677888888888777665542 11222222222222345688
Q ss_pred HhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchh
Q 001173 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (1133)
Q Consensus 687 ~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~ 766 (1133)
|++-|+++++ ++++.-.+-+|-.||+.-|+.-.|.+.+...++.+|+..+|+.+|.+++-++++|++|.+.+++++...
T Consensus 722 lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V~sYm 800 (868)
T KOG1934|consen 722 LSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFVPSYM 800 (868)
T ss_pred hHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhchHHH
Confidence 8999999998 566666677777799999998888776544699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 767 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 767 vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
++.|.-..-+.+.+.++=.+.++|++|++..+..
T Consensus 801 v~vF~KTv~LVv~~GllHGLv~LPviLs~f~~~~ 834 (868)
T KOG1934|consen 801 VQVFFKTVVLVVTLGLLHGLVFLPVILSLFPPIK 834 (868)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999999999999876543
No 23
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.47 E-value=1.1e-11 Score=162.41 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=141.1
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.++.+ +.+++..+.-...++++++++++.+.+.|++++ .+++.++.+.+++++++|++
T Consensus 318 p~g~~~~~~~d~~--~~i~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r------------~~li~~~~iP~si~~t~~~~ 383 (1037)
T PRK10555 318 PHGLEYKVAYETT--SFVKASIEDVVKTLLEAIALVFLVMYLFLQNFR------------ATLIPTIAVPVVLMGTFSVL 383 (1037)
T ss_pred CCCcEEEEeeccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH------------HHHHHHhhhHHHHHHHHHHH
Confidence 4577776665542 112222222233467788888888888887753 26777788899999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh--cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccC-Cc
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-PM 764 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s-~~ 764 (1133)
.++|+++|. ++.+.+.+.+|+.|||++|+++.+++.. .+.+..+++.++.++.+.+++.+++|++++|+-..+. ..
T Consensus 384 ~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~stltti~~flPl~~~~G~ 462 (1037)
T PRK10555 384 YAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGT 462 (1037)
T ss_pred HHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999997 5778888889999999999999998863 4789999999999999999999999999999976654 22
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001173 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 765 --p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR 799 (1133)
...+.|++..++++++++++.+|+.|+++++..++
T Consensus 463 ~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~~~~~~ 499 (1037)
T PRK10555 463 TGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKP 499 (1037)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34699999999999999999999999999876543
No 24
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.46 E-value=1.5e-11 Score=160.55 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=134.7
Q ss_pred CCCeEEEEccch--hHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~v~f~~e~--sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
++++++.+.++. .+++.++.. ...+..+++++++.+.+.|++++ .++...+++.++++++++
T Consensus 311 P~g~~~~~~~d~~~~i~~~~~~~----~~~l~~~~ilv~lvl~lfl~~~r------------~~l~~~~~IP~s~~~~~~ 374 (1017)
T PRK09579 311 PPNLKVSIAYDATLFIQASIDEV----VKTLGEAVLIVIVVVFLFLGALR------------SVLIPVVTIPLSMIGVLF 374 (1017)
T ss_pred CCCcEEEEEecCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 456666655443 333444332 22345566666666666666542 256667788899999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC-
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 763 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~- 763 (1133)
++.++|+++|. ++.+...+++|+.|||+++++..+++. ..+.++.+++.++.++.+.++++|++|++++|+-..+.+
T Consensus 375 ~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~stlTti~~f~Pl~f~~g 453 (1017)
T PRK09579 375 FMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTG 453 (1017)
T ss_pred HHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999997 455666677888899999999988775 467899999999999999999999999999999765543
Q ss_pred c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173 764 M--PACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 764 ~--p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~r 798 (1133)
. +.++.|++..++++++++++++|+.|++.++..+
T Consensus 454 ~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~~ 490 (1017)
T PRK09579 454 LTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLR 490 (1017)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 5689999999999999999999999999886543
No 25
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.46 E-value=5e-12 Score=142.34 Aligned_cols=165 Identities=11% Similarity=0.234 Sum_probs=143.0
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchh
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~ 698 (1133)
.++.+|+.+. -+..+++++++|++|+.+.++ + ..++..++.+..+++.++|++.++|++++. .
T Consensus 119 ~~vg~~~~~~---~~~a~~~al~~i~i~l~~~F~-~------------~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~ 181 (289)
T PRK13022 119 PQVGKELAQK---GLLALLVALVGILIYIAFRFE-W------------RFALGAIIALLHDVIITLGIFSLFQIEFDL-T 181 (289)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4676676664 344567888999999887653 2 247888999999999999999999999997 5
Q ss_pred hhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 001173 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1133)
Q Consensus 699 ~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aa 775 (1133)
+.+...+++|+++||.+++..++++.. ++.+.++++.+++.++..+++.|++|++++|+.+.+...+.++.|++...
T Consensus 182 siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~ 261 (289)
T PRK13022 182 VIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALYLFGGGTLHDFALALL 261 (289)
T ss_pred HHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 667777889999999999999999864 35789999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 776 LAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 776 iav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
+|++++.+.++++.|+++.+..+|.
T Consensus 262 ~Gli~~~~~sl~i~p~l~~~~~~~~ 286 (289)
T PRK13022 262 IGIIVGTYSSIFVASPLLLWLGVRR 286 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999876554
No 26
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.46 E-value=1.4e-11 Score=161.53 Aligned_cols=174 Identities=16% Similarity=0.235 Sum_probs=138.7
Q ss_pred CCCeEEEEccch--hHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~v~f~~e~--sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
++++++.+..+. .+++.++. ....++++++++++.+.+.|++++ .+++..+.+.++++.+++
T Consensus 318 P~g~~~~~~~d~~~~i~~~~~~----~~~~~~~a~~lv~lvl~l~l~s~r------------~~li~~~~iP~s~~~~~~ 381 (1044)
T TIGR00915 318 PQGMKYVYPYDTTPFVSASIEE----VVHTLIEAIVLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFA 381 (1044)
T ss_pred CCCCeEEEEEeccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH
Confidence 456777665443 23333333 344566777777777777777652 257777788899999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH--hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccC-
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI- 762 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~--~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s- 762 (1133)
++.++|+++|. ++.+...+.+|+.|||++++++.+++. .++.++.+++.++.++++++++.|++|++++|+-.++.
T Consensus 382 ~~~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~ttltti~~flPl~~~~ 460 (1044)
T TIGR00915 382 VLAAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1044)
T ss_pred HHHHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 556666777888899999999988775 35789999999999999999999999999999977664
Q ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173 763 --PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 763 --~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~r 798 (1133)
.-+.++.|++..+++++++++..+++.|++..+..+
T Consensus 461 G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~ 498 (1044)
T TIGR00915 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLK 498 (1044)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356689999999999999999999999999886543
No 27
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.42 E-value=2.5e-11 Score=158.81 Aligned_cols=255 Identities=13% Similarity=0.174 Sum_probs=171.2
Q ss_pred CCCeEEEEccc--hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSE--SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~v~f~~e--~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
++++++.+..+ ..+++.++.. ...++++++++++.+.+.|++++ .+++..+.+.++++++++
T Consensus 321 P~g~~~~~~~d~~~~i~~~i~~~----~~~l~~~~~lv~~vl~lfl~~~r------------~~~i~~~~ip~s~~~~~~ 384 (1040)
T PRK10503 321 PKSVKVTVLSDRTTNIRASVDDT----QFELMLAIALVVMIIYLFLRNIP------------ATIIPGVAVPLSLIGTFA 384 (1040)
T ss_pred CCCcEEEEEecCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcchH------------HHHHHHhhhHHHHHHHHH
Confidence 45666665443 3444444432 33455666666666666676652 266777888999999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCc
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~ 764 (1133)
++.++|+++|. ++.+...+++|+.|||+++++..+++. .++.++.+++.++.++++.+++.+++|++++|+-..+++-
T Consensus 385 ~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~tltti~~f~Pl~~~~g 463 (1040)
T PRK10503 385 VMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463 (1040)
T ss_pred HHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999997 455566677888899999999988776 4567888999999999999999999999999997777654
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhh
Q 001173 765 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 841 (1133)
Q Consensus 765 ---p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~ya 841 (1133)
..++.|++..++++++.+++.+|+.|++++...++...++.+ .. ....+..+.+ +++.|.
T Consensus 464 ~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~---------~~-------~~~~~~~~~~-l~~~y~ 526 (1040)
T PRK10503 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQN---------RF-------SRASERMFDR-VIAAYG 526 (1040)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc---------hH-------HHHHHHHHHH-HHHHHH
Confidence 678999999999999999999999999988654322100000 00 0000111222 233344
Q ss_pred h---hhcccceeehhHHHHHHHHHHHHhhhcccCCCcccc---------cCCCCCchHhH---HHHHHHhhc
Q 001173 842 T---ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHL 898 (1133)
Q Consensus 842 p---~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~---------~~lP~dSyl~~---y~~~~~~~f 898 (1133)
+ +.+++ |..++++++++++++++....+..++=+. .-+|.++.+.+ ..+.+++++
T Consensus 527 ~~l~~~l~~--~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l 596 (1040)
T PRK10503 527 RGLAKVLNH--PWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVI 596 (1040)
T ss_pred HHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4 34444 34455666667777777766666655332 24566665433 344455555
No 28
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.42 E-value=2.9e-11 Score=158.29 Aligned_cols=174 Identities=16% Similarity=0.200 Sum_probs=139.4
Q ss_pred CCCeEEEEccch--hHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~v~f~~e~--sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
++++++...++. .+++.++.. ...++++++++++.+.+.|++++ .++..++++.++++.+++
T Consensus 317 P~g~~~~~~~d~~~~i~~~i~~~----~~~l~~~~ilv~lvl~l~l~s~r------------~~liv~~~iP~s~~~~~~ 380 (1032)
T PRK09577 317 PPGVKYQIPYETSSFVRVSMNKV----VTTLIEAGVLVFLVMFLFMQNFR------------ATLIPTLVVPVALLGTFG 380 (1032)
T ss_pred CCCcEEEEEecCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH
Confidence 467776665443 333334332 23456677777777777777652 267778888999999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh--cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~ 763 (1133)
++.++|+++|. ++.+...+.+|+.|||++++++++++.. .+.++.+++.++.++++++++.+++|++++|+-+++.+
T Consensus 381 ~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~tlt~~~~flPl~~~~ 459 (1032)
T PRK09577 381 VMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459 (1032)
T ss_pred HHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 5777778889999999999999988753 57899999999999999999999999999999665543
Q ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173 764 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 764 ---~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~r 798 (1133)
-...+.|++..+++++++++..+|+.|+++.+..+
T Consensus 460 g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~~ 497 (1032)
T PRK09577 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLK 497 (1032)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34589999999999999999999999999887654
No 29
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.41 E-value=2.8e-12 Score=136.17 Aligned_cols=137 Identities=13% Similarity=0.176 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccce
Q 001173 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714 (1133)
Q Consensus 635 ~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~ 714 (1133)
.+.++++++++++.+.+| + ..++..++.+..++++++|+|+++|+++|. .+.+.+.+++|+++||.
T Consensus 52 ~l~~a~~lv~l~l~~~~r-~------------~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~a 117 (192)
T TIGR00916 52 ALLIGLVLVLLYMLLRYE-W------------RGAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDT 117 (192)
T ss_pred HHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCe
Confidence 356788888888777654 2 225666778888899999999999999997 67888888999999999
Q ss_pred EehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH
Q 001173 715 CILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 785 (1133)
Q Consensus 715 f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~ 785 (1133)
+|++++++++. ++.+.++++.++.++.+++++.|++|++++|+.+.+++.+.+|.|++...+|++++++..
T Consensus 118 Ivv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 118 VVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred EEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999998763 577999999999999999999999999999999998899999999999999999988764
No 30
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.40 E-value=5.7e-12 Score=158.45 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhcccc
Q 001173 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1133)
Q Consensus 633 ~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD 712 (1133)
+..++++++++++|+.+.++. .++..++.+.++++.++|++.++|+++++ ....-..+++|++||
T Consensus 269 ~~a~~ial~lV~i~l~~~fr~--------------~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd 333 (755)
T PRK13024 269 IIAGIIGFALIFLFMLVYYGL--------------PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVD 333 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHh
Confidence 334678888888888776532 37788889999999999999999999997 566777888999999
Q ss_pred ceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1133)
Q Consensus 713 ~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpa 791 (1133)
|.++++++++++ +.+.+..+++.++.++++.+++.|++|++++|+.+.+...+++|.|++..++|++++++..+++.|+
T Consensus 334 ~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~ 413 (755)
T PRK13024 334 ANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRL 413 (755)
T ss_pred CcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986 4678899999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHhhhcccc
Q 001173 792 LIVFDFLRA 800 (1133)
Q Consensus 792 lL~l~~rR~ 800 (1133)
++.+..++.
T Consensus 414 l~~~~~~~~ 422 (755)
T PRK13024 414 LLELLVKRG 422 (755)
T ss_pred HHHHhhccC
Confidence 999876654
No 31
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.40 E-value=5.9e-11 Score=155.52 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=138.4
Q ss_pred CCCeEEEEccchh--HHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~v~f~~e~s--l~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
++++++.+..+.+ +++.+.. -...++++++++++.+.+.|++++ .++...+.+.++++.+++
T Consensus 318 P~g~~i~~~~d~~~~i~~~~~~----~~~~l~~~~~lv~~vl~l~l~~~r------------~~li~~~~iP~sl~~~~~ 381 (1049)
T PRK15127 318 PSGLKIVYPYDTTPFVKISIHE----VVKTLVEAIILVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFA 381 (1049)
T ss_pred CCCceEEEEecchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 5677766654432 2323222 233456788888888888887753 256677788899999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh--cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccC-
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI- 762 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s- 762 (1133)
++.++|+++|. ++.+...+.+|+.|||++++++.+++.. .+.++.+++.++.++++++++.+++|++++|+-.++.
T Consensus 382 ~~~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~tltt~~~f~Pl~~~~ 460 (1049)
T PRK15127 382 VLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1049)
T ss_pred HHHHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999997 5666677788999999999999998753 5789999999999999999999999999999977663
Q ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173 763 --PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 763 --~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~r 798 (1133)
.-..++.|++..+.++++.++..+|+.|++.++..+
T Consensus 461 G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~~~l~ 498 (1049)
T PRK15127 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLK 498 (1049)
T ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 234479999999999999999999999999886544
No 32
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.35 E-value=1.4e-11 Score=152.61 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccce
Q 001173 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714 (1133)
Q Consensus 635 ~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~ 714 (1133)
-.+++++++++|+.+..+. .|+..++.+.+.++.++|++.++|.++|+ ....--.+++|++||+.
T Consensus 283 A~ii~~~lV~lfm~~~Y~~--------------~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD~~ 347 (758)
T PRK13023 283 AALLAALVVGLFMVLSYGI--------------LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVDAH 347 (758)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhccCc
Confidence 3467778888887765432 37788889999999999999999999997 55566678889999999
Q ss_pred EehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 715 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793 (1133)
Q Consensus 715 f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL 793 (1133)
+++.++++++ +.+.+..+++.++.++++.+|+.+++|++++|+.+.+...+++|.|++...+|++++++..+++.|+++
T Consensus 348 Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l~ 427 (758)
T PRK13023 348 ILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427 (758)
T ss_pred EEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 467899999999999999999999999999999988888899999999999999999999999999999
Q ss_pred hhhccc
Q 001173 794 VFDFLR 799 (1133)
Q Consensus 794 ~l~~rR 799 (1133)
.+..++
T Consensus 428 ~~~~~~ 433 (758)
T PRK13023 428 AQWVRT 433 (758)
T ss_pred HHHHhh
Confidence 876655
No 33
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.35 E-value=6.4e-11 Score=152.27 Aligned_cols=255 Identities=16% Similarity=0.224 Sum_probs=178.9
Q ss_pred CCCeE--EEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLT--LAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~--v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
+.+++ +.|.....++..+++ -+..++.+.++.++.+.+.|++++. ++++.+.+-+|++.+|+
T Consensus 309 P~gv~~~~~~D~t~~V~~si~~----v~~tL~~a~~lVv~Vi~lFL~~~ra------------tlI~~iaiPlsLlgtf~ 372 (1009)
T COG0841 309 PQGVDIAIPYDTTEFIKASIEE----VIKTLFEAIVLVVLVMYLFLGNLRA------------TLIPALAVPVSLLGTFA 372 (1009)
T ss_pred CCCcEEEEecCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcce------------eEEeeeechHHHHHHHH
Confidence 45554 455555555555544 3445777777777777777887642 46677788899999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-cCCc
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS-FIPM 764 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~-~s~~ 764 (1133)
+|.++|+.+|. ++..--.|.+|+=|||++++++.-+|...+.++.++..+++++++.+++.+++|.+++|+-.+ +..+
T Consensus 373 ~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~TlvliaVF~Pi~f~~G~ 451 (1009)
T COG0841 373 VMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAITLVLIAVFLPMAFMGGS 451 (1009)
T ss_pred HHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999997 444444555566689999998776653239999999999999999999999999999999544 4444
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhh
Q 001173 765 PA--CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHAT 842 (1133)
Q Consensus 765 p~--vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap 842 (1133)
.. .|.|++..++++++.++..+|+-|++-+...|+..... ...-+. .+..+.+.++.++.+ .
T Consensus 452 ~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~-~~~~~~--------------~~~~~~~~~~Y~~~l-~ 515 (1009)
T COG0841 452 TGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPK-GFFGWF--------------NRFFDRLEDRYQRGL-R 515 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-chhhhh--------------hhhhhHHHHHHHHHH-H
Confidence 43 79999999999999999999999999887665432211 000000 001112223333332 3
Q ss_pred hhcccceeehhHHHHHHHHHHHHhhhcccCCCcccc---------cCCCCCch---HhHHHHHHHhh
Q 001173 843 ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSY---LQGYFNNISEH 897 (1133)
Q Consensus 843 ~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~---------~~lP~dSy---l~~y~~~~~~~ 897 (1133)
+++++ |+.++++++++++.++|+...++.++=|. .-+|+++. ..+..+.++++
T Consensus 516 ~~L~~--~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~ 580 (1009)
T COG0841 516 WVLRR--RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDW 580 (1009)
T ss_pred HHHhh--HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45555 66778888899999999999999988655 24778753 34445555554
No 34
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.33 E-value=1.5e-10 Score=152.47 Aligned_cols=227 Identities=15% Similarity=0.145 Sum_probs=155.8
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++....+.+ +.+++..+.-...++++.+++++.+.+.|++++ .+++..+.+-++++.++.+|
T Consensus 321 P~g~~~~~~~d~s--~~i~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r------------~~liv~~~iP~s~~~~~~~m 386 (1051)
T TIGR00914 321 PEGVEIVTTYDRS--QLVDAAIATVKKNLLEGALLVIVILFLFLGNIR------------AALIAATVIPLSLLITFIGM 386 (1051)
T ss_pred CCCcEEEEecCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5677776554443 223332222233355666666666666677652 25677778889999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-c-----C-----CCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-----E-----LPLETRISNALVEVGPSITLASLSEVLAF 756 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~-----~-----~~~~e~i~~al~~~g~si~ltslt~~~~F 756 (1133)
.++|+++|.+ + +. .|++|+-|||+++++...++.. . + .++.+++.++.++++.+|+.|++|++++|
T Consensus 387 ~~~g~sln~~-s-l~-~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~stlTti~~f 463 (1051)
T TIGR00914 387 VFQGISANLM-S-LG-ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQLIITLVF 463 (1051)
T ss_pred HHhCCcHHHH-H-HH-HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999974 3 23 5677999999999987754321 1 2 56778999999999999999999999999
Q ss_pred HhhccCC-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHH
Q 001173 757 AVGSFIP-M--PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLA 833 (1133)
Q Consensus 757 ~~~~~s~-~--p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~ 833 (1133)
+-+++.+ . ..++.|++..++++++.++..+|+.|+++++..++.+..+ +.. +.
T Consensus 464 lPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~~~-----------------------~~~-~~ 519 (1051)
T TIGR00914 464 LPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEK-----------------------ENR-LM 519 (1051)
T ss_pred HHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc-----------------------cCh-HH
Confidence 9765433 2 4589999999999999999999999999887543211000 001 11
Q ss_pred HHHHHHhhh---hhcccceeehhHHHHHHHHHHHHhhhcccCCCccc
Q 001173 834 RYMKEVHAT---ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ 877 (1133)
Q Consensus 834 ~f~~~~yap---~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~ 877 (1133)
+.+++.|.+ +.+++ |+.+++++++++++++++..+++..+-+
T Consensus 520 ~~~~~~Y~~~l~~~l~~--~~~~i~~~~~ll~~~~~~~~~l~~~f~P 564 (1051)
T TIGR00914 520 RVLKRRYEPLLERVLAW--PAVVLGAAAVSIVLVVWIASRVGGEFIP 564 (1051)
T ss_pred HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCcCcCC
Confidence 123333433 34444 3456667777788888887777766644
No 35
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.33 E-value=6.4e-10 Score=146.25 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhc-CCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhcc
Q 001173 632 DAITIVISYLVMFAYISLTLG-DTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 710 (1133)
Q Consensus 632 d~~~l~is~llmf~y~~~~l~-~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIG 710 (1133)
-+..++++.++|++.+++.+| +. ..++..++.+.++++..+|+|.+.|+++|. ++.+.-.+.+|++
T Consensus 1050 ~~~~l~~a~~~v~~V~~l~l~l~~------------~~aliv~l~I~~i~~~~~g~M~~~gisLN~-vSlv~Li~avGis 1116 (1204)
T TIGR00917 1050 ALINLGISLGAIFIVTLVLLGLNA------------LSAVNVVISVGMIVVNLVGIMHLWNISLNA-VSVVNLVMAKGIS 1116 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc------------hhHHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHhhhH
Confidence 334466777777777766653 32 226677788899999999999999999998 5667777788999
Q ss_pred ccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhhccCCchhHHHHHHHHHHHH-HHHHHHHHHH
Q 001173 711 VDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLA-SLSEVLAFAVGSFIPMPACRVFSMFAALAV-LLDFLLQITA 788 (1133)
Q Consensus 711 vD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~lt-slt~~~~F~~~~~s~~p~vr~F~l~aaiav-~~~~l~~lt~ 788 (1133)
|+..-|+.++|.+.. ..++.+|+.++++++|.+++.. ++|+++||+.+++++...++.|-.-+-+++ ++.++=.+.+
T Consensus 1117 V~f~~hI~~~f~~~~-~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvf 1195 (1204)
T TIGR00917 1117 IEFCSHINAQFSTSK-HFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVF 1195 (1204)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987642 4578899999999999999998 689999999999999999998766665544 7788888999
Q ss_pred HHHHHhhh
Q 001173 789 FVALIVFD 796 (1133)
Q Consensus 789 fpalL~l~ 796 (1133)
+|.+|++.
T Consensus 1196 LPVlLS~~ 1203 (1204)
T TIGR00917 1196 LPVLLSYI 1203 (1204)
T ss_pred HHHHHHhc
Confidence 99999875
No 36
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.32 E-value=9.6e-11 Score=154.27 Aligned_cols=257 Identities=16% Similarity=0.198 Sum_probs=170.1
Q ss_pred CCCeEEE--EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLA--FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1133)
Q Consensus 608 ~~~l~v~--f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~G 685 (1133)
++++++. +.....+++.++.. ...++++.++.++.+.+.||+|+ .++...+.+-+|++.++.
T Consensus 311 p~~~~~~~~~d~s~~i~~~i~~l----~~~~~~g~~lv~~vl~lfl~~~r------------~~liv~~~IPisi~~t~~ 374 (1021)
T PF00873_consen 311 PEGLEITIVYDQSEYIEESINNL----ISNLLIGIILVVLVLLLFLRNWR------------SALIVALSIPISILGTFI 374 (1021)
T ss_dssp STTEEEEEEEESHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTSHH------------HHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEechHHHHHHHHHH----HHHHHHHhHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHHHHH
Confidence 4566554 44444455555543 33456677777777777777753 266677788899999999
Q ss_pred HHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hc-CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC
Q 001173 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (1133)
Q Consensus 686 l~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~-~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~ 763 (1133)
+|.++|+++|. ++..--.+.+|+=|||++++++..++. .. +.++.+++.++.++++++++.+++|++++|+-..+.+
T Consensus 375 ~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~vF~Pl~f~~ 453 (1021)
T PF00873_consen 375 FMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAVFLPLLFMP 453 (1021)
T ss_dssp HHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGSB
T ss_pred HHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999997 333333344455589999999887665 44 8999999999999999999999999999999776654
Q ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHh
Q 001173 764 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVH 840 (1133)
Q Consensus 764 ---~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~y 840 (1133)
-..++.|++..++++++.++..+|+.|++.++..|+....+...+ ....+....++++.|
T Consensus 454 G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~-----------------~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 454 GIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRF-----------------FSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCH-----------------HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccc-----------------cccccccccccccch
Confidence 234899999999999999999999999999876655433221000 000011112233445
Q ss_pred hh---hhcccceeehhHHHHHHHHHHHHhhhcccCCCcccc---------cCCCCCchHhH---HHHHHHhhcCC
Q 001173 841 AT---ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRI 900 (1133)
Q Consensus 841 ap---~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~---------~~lP~dSyl~~---y~~~~~~~f~~ 900 (1133)
.+ +.+++ |..++++++++++++++...+++..+=+. --+|+++.+.+ ..+.+++++..
T Consensus 517 ~~lL~~~L~~--~~~~l~i~l~l~i~s~~l~~~l~~ef~P~~d~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~ 589 (1021)
T PF00873_consen 517 RRLLRWALRH--PKLVLLIALLLLILSLFLFPFLPKEFFPPSDRGEFYVSVELPPGTSLEETDAIVKQVEDILKE 589 (1021)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHHHHHHHCTSEBESS----TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhc--ccchhhhhhhhhhhhhcccccCCcccCCcccCCceEEEEeeccCchHHHHHHHHHHHHHHHHh
Confidence 55 34444 34456667777888888888776555332 24667765443 34444555543
No 37
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.30 E-value=4.7e-11 Score=149.78 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceE
Q 001173 636 IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC 715 (1133)
Q Consensus 636 l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f 715 (1133)
++++++++++|+.+.+|. .|+...+.+.+.++.++|++.++|.++|+ +...--.+.+|++||+.+
T Consensus 378 liig~ilV~l~m~lfyr~--------------~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~I 442 (855)
T PRK14726 378 GLIAAILVAALMIGFYGF--------------LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSNV 442 (855)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCceE
Confidence 456777777776665431 37778888899999999999999999997 333444566788899999
Q ss_pred ehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001173 716 ILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIV 794 (1133)
Q Consensus 716 ~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~ 794 (1133)
++.++.+++ +.+.+..+++..+.++++.+|+.+++|++++|+.+.+..-.++|.|++..++|+++.++..+++.|+++.
T Consensus 443 VI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~~ 522 (855)
T PRK14726 443 LIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVA 522 (855)
T ss_pred EeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 4677899999999999999999999999999999988888889999999999999999999999999998
Q ss_pred hhccc
Q 001173 795 FDFLR 799 (1133)
Q Consensus 795 l~~rR 799 (1133)
+..++
T Consensus 523 ~~l~~ 527 (855)
T PRK14726 523 VWLRR 527 (855)
T ss_pred HHhcc
Confidence 76543
No 38
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.26 E-value=9.3e-11 Score=140.34 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccc
Q 001173 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1133)
Q Consensus 634 ~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~ 713 (1133)
.-++++++++++|+.+.++. .|+..++.+.++++.++|++.++|+++|+ ....--.+++|++||+
T Consensus 337 ~A~lig~ilV~i~m~~~yr~--------------~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD~ 401 (498)
T PRK05812 337 IAGLIGLALVLLFMILYYRL--------------FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVDA 401 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEec
Confidence 34677888888888877653 37888899999999999999999999997 4555566788999999
Q ss_pred eEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 714 MCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 792 (1133)
Q Consensus 714 ~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpal 792 (1133)
.+++.++++++ +.+.+..+++.++.++++.+|+.|++|++++|+.+.+...+.++.|++...+|++++++..+++.|++
T Consensus 402 ~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~l 481 (498)
T PRK05812 402 NVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRAL 481 (498)
T ss_pred eEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 56788999999999999999999999999999988876667899999999999999999999999999
Q ss_pred Hhhhcc
Q 001173 793 IVFDFL 798 (1133)
Q Consensus 793 L~l~~r 798 (1133)
+.+..+
T Consensus 482 ~~~~~~ 487 (498)
T PRK05812 482 VNLLYG 487 (498)
T ss_pred HHHHHh
Confidence 985443
No 39
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.21 E-value=6.7e-10 Score=122.75 Aligned_cols=140 Identities=14% Similarity=0.257 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccc
Q 001173 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1133)
Q Consensus 634 ~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~ 713 (1133)
..++++.+++++|+.+.++ | ..++..++.+.++++.++|++.++|+++|. .+.+-..+++|+.+||
T Consensus 102 ~~~~la~i~i~l~l~~~f~-~------------r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd 167 (246)
T TIGR00966 102 LALLAALVLILIYITVRFE-W------------RFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSIND 167 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccC
Confidence 3456677777777766543 2 247888899999999999999999999997 5667777889999999
Q ss_pred eEehHHHHHHH-h--cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001173 714 MCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQIT 787 (1133)
Q Consensus 714 ~f~l~~~~~~~-~--~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt 787 (1133)
.+++.+++++. + ++.+..+++.++.++...+++.|++|++++|+.+.+.+-+.+|.|++...+|+++..+.++.
T Consensus 168 ~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 168 TVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred eEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 2 36789999999999999999999999999999888877799999999999999999887765
No 40
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.20 E-value=7.7e-10 Score=124.85 Aligned_cols=161 Identities=11% Similarity=0.181 Sum_probs=128.1
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchh
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~ 698 (1133)
.++.+|+.+. -...++++.++|++|+.+.+++ +..++..++.++..++.++|++.++|++++..
T Consensus 126 p~~g~~~~~~---~~~al~~alilI~i~l~l~F~s------------~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~- 189 (292)
T PRK08578 126 PTFGSQFQEQ---ALKAVGFAFIGMAVVVFLIFRT------------PVPSLAVILSAFSDIIIALALMNLFGIELSLA- 189 (292)
T ss_pred cchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHCccccHH-
Confidence 4455555553 2344678889999998887654 23478888889999999999999999999974
Q ss_pred hhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccC----CchhHHHHHHHH
Q 001173 699 MEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI----PMPACRVFSMFA 774 (1133)
Q Consensus 699 ~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s----~~p~vr~F~l~a 774 (1133)
+...-.+++|+++||.+++.+++++.. .+..+++.+++++. +.+++|++++|+.+.+. ..+.+|.|++..
T Consensus 190 ~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~----i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l 263 (292)
T PRK08578 190 TVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG----ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVL 263 (292)
T ss_pred HHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 333334678999999999999997653 57889999988543 35679999999876543 578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc
Q 001173 775 ALAVLLDFLLQITAFVALIVFDFLRAE 801 (1133)
Q Consensus 775 aiav~~~~l~~lt~fpalL~l~~rR~~ 801 (1133)
.+|++++++.++++.++++.+..+|+.
T Consensus 264 ~~Gli~s~~~tl~~~~~~l~~~~~~~~ 290 (292)
T PRK08578 264 IFGLLADLMNTWLLNAGILRWYKTEGK 290 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999998766653
No 41
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.20 E-value=3.1e-10 Score=143.09 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHH
Q 001173 669 GLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITL 747 (1133)
Q Consensus 669 gl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~l 747 (1133)
|+...+.+++.++.++|++.++|+++++ ....--.+++|++||+.+++..+.+++ +.+.+..+++..+..++..+|+.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 6667777788889999999999999997 445555678899999999999999887 46789999999999999999999
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 748 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 748 tslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
|++|++++++.+.+...++++.|++..++|+++.++..+++.|+++.+..+|.
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~l~l~~~ 1065 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFMIWMNKT 1065 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998877777779999999999999999999999999998766543
No 42
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.20 E-value=2.4e-10 Score=134.05 Aligned_cols=146 Identities=14% Similarity=0.217 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhcccc
Q 001173 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1133)
Q Consensus 633 ~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD 712 (1133)
+..++++++++++|+.+.+++ .|+..++.+.+.++.++|++.++|+++++ ...+--.+++|++||
T Consensus 251 ~~a~~ig~ilV~l~~~~~yr~--------------~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD 315 (397)
T TIGR01129 251 IKAGLIGLVLVLVFMILYYRL--------------FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVD 315 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeee
Confidence 344678888899998887653 37888888999999999999999999997 455666788899999
Q ss_pred ceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1133)
Q Consensus 713 ~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpa 791 (1133)
+.+++.++++++ +.+.+..+++.++.++++.+++.|++|++++|+.+.+...+.+|.|++...+|+++.++..+++...
T Consensus 316 ~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~ 395 (397)
T TIGR01129 316 ANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRL 395 (397)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999986 4677899999999999999999999999999998887677789999999999999999999998776
Q ss_pred HH
Q 001173 792 LI 793 (1133)
Q Consensus 792 lL 793 (1133)
++
T Consensus 396 ~~ 397 (397)
T TIGR01129 396 LL 397 (397)
T ss_pred hC
Confidence 53
No 43
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.12 E-value=1.3e-09 Score=131.14 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=131.8
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhc-Ceeecch
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-GVKSTLI 697 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~-Gi~~~~i 697 (1133)
.++..|..+. -+.-++++++++++|+.+.+++ .|+...+.+.+.++.++|+|+++ |.++|+
T Consensus 432 psLG~~~i~~---gl~A~iig~vlV~lFm~~~Yr~--------------~glva~iAL~~~l~l~l~vmsll~G~tLtL- 493 (604)
T PRK12933 432 PSLGAENIEN---GFAALALGMGITLLFMALWYRR--------------LGWVANVALIANMVCLFGLLALIPGAVLTL- 493 (604)
T ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhCCcccH-
Confidence 4454444432 2333566777777777654433 27778888999999999999998 999997
Q ss_pred hhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 001173 698 IMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAAL 776 (1133)
Q Consensus 698 ~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aai 776 (1133)
....--.|.+|+.||+.+++.++.+++ +.+.+..+++.....++..+|+.+++|++++|+.+.+..-.++|.|++...+
T Consensus 494 pgIAGiILtIGmaVDanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~i 573 (604)
T PRK12933 494 PGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGL 573 (604)
T ss_pred HHHHHHHHHHHhhccCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 444444567789999999999999887 4677899999999999999999999999999998877666779999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 001173 777 AVLLDFLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 777 av~~~~l~~lt~fpalL~l~~rR 799 (1133)
|++..++..+++-|+++.+..+|
T Consensus 574 GIl~S~ftAi~vtr~l~~~~~~~ 596 (604)
T PRK12933 574 GLLTSMFTGIFASRALINLVYGR 596 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998865444
No 44
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.12 E-value=7.8e-10 Score=145.65 Aligned_cols=179 Identities=13% Similarity=0.167 Sum_probs=140.6
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. +++++....-...++++++++++.+++.|++++ .+++.++++-++++.++..+
T Consensus 859 P~g~~~~~~g~~---~~~~~~~~~l~~~~~~a~~li~lvL~~~f~s~~------------~~lii~~~iPl~~~g~~~~l 923 (1051)
T TIGR00914 859 PPGYWITWGGQF---EQLQSATKRLQIVVPVTLLLIFVLLYAAFGNVK------------DALLVFTGIPFALTGGVFAL 923 (1051)
T ss_pred CCceEEEecchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 578999988863 333333222233356677777777777777652 25666677778888888778
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC---
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP--- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~--- 763 (1133)
.++|.+++. .+.+-..+++||.|||++++++.+++. .++.+..+++.++..+...+|++|++|+++||+-+++..
T Consensus 924 ~~~g~~l~~-~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl~ttltti~g~lPl~~~~g~~ 1002 (1051)
T TIGR00914 924 WLRGIPLSI-SAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATGTG 1002 (1051)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 899999996 555666677899999999999999876 467899999999999999999999999999999776653
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 001173 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAED 802 (1133)
Q Consensus 764 ~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~ 802 (1133)
.+..+.+++..+.|+++++++.+++.|+++.+..++++.
T Consensus 1003 ~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~~~~~~~~~ 1041 (1051)
T TIGR00914 1003 AEVQRPLATVVIGGIITATLLTLFVLPALYRLVHRRRHK 1041 (1051)
T ss_pred hhhhcCceEEEEchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 355788999999999999999999999999987766543
No 45
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.11 E-value=3.4e-09 Score=133.62 Aligned_cols=171 Identities=15% Similarity=0.232 Sum_probs=142.8
Q ss_pred eEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 001173 611 LTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 690 (1133)
Q Consensus 611 l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~ 690 (1133)
.+...-| .++.+|+.+. -+.-+++++++|++|+.+-+ + +..++.+++..+.-++.++|+++++
T Consensus 562 ~~~~~Vg-p~~g~~~~~~---~~~a~~~a~~~i~iyi~~rF-~------------~~~~~~aiial~~dvii~~g~~~l~ 624 (755)
T PRK13024 562 PSSETVG-PTVGKELARN---AIIAVLIALIGILLYILIRF-E------------WTFSLGAILALLHDVLIVIGFFSLF 624 (755)
T ss_pred eEEEEEC-HhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444433 5677777765 34457788999999988755 2 3358889999999999999999999
Q ss_pred CeeecchhhhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhH
Q 001173 691 GVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (1133)
Q Consensus 691 Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~v 767 (1133)
|+++++ .....-..++|.++||.+++.+|++|+. ++.+.++.+..++.+++...+.|++|++++++++.+...+.+
T Consensus 625 ~~~~~~-~~iaall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~tl~rti~ts~tt~~~~~~L~~~g~~~i 703 (755)
T PRK13024 625 RLEVDL-TFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSL 703 (755)
T ss_pred cceEcH-HHHHHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 999997 3444455778999999999999999963 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001173 768 RVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 768 r~F~l~aaiav~~~~l~~lt~fpalL~l~~rR 799 (1133)
|.|++.+.+|++++..-++.+-++++.+..+|
T Consensus 704 ~~fa~~l~iGii~g~~ssifia~~l~~~~~~~ 735 (755)
T PRK13024 704 RNFSLALLVGLIVGTYSSIFIAAPLWLDLEKR 735 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998887777655444
No 46
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.04 E-value=1.1e-08 Score=108.32 Aligned_cols=163 Identities=17% Similarity=0.267 Sum_probs=132.0
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchh
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~ 698 (1133)
.++.+|+.+. -+.-+.++++++++|+.+.++ ...++..++..+..++.++|+++++|+++++ .
T Consensus 23 p~~g~~~~~~---~~~a~~~al~~i~iyi~~rf~-------------~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~ 85 (189)
T PF02355_consen 23 PTLGSDLLKS---ALIALIIALIAILIYIFLRFR-------------WRFALAAIIALIHDVLITLGIFSLFGIELTL-P 85 (189)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-H
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4566666553 344567788888888876542 2247888888888899999999999999997 4
Q ss_pred hhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 001173 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1133)
Q Consensus 699 ~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aa 775 (1133)
....-.+++|.++|+.+++.+|.+|+. ++.+.++++.++++++...++.|++|++++.+.+.+..-.+++.|++...
T Consensus 86 ~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~ 165 (189)
T PF02355_consen 86 SIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLI 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455557888999999999999999983 47889999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 001173 776 LAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 776 iav~~~~l~~lt~fpalL~l~~r 798 (1133)
+|++.+.+..+.+-++++.+..+
T Consensus 166 iGvi~~~~ss~~ia~~l~~~l~~ 188 (189)
T PF02355_consen 166 IGVIIGTYSSLFIARPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999886543
No 47
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.03 E-value=8.2e-09 Score=135.68 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=143.0
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. +|..+....-...++++++++++.+.+.+++++ .+++-++++-++++.++-.+
T Consensus 851 P~g~~~~~~G~~---~~~~~~~~~~~~~~~~al~li~lvl~~~F~S~~------------~pliI~~~iPlsl~G~~~~l 915 (1044)
T TIGR00915 851 PPGFGFSWTGMS---YEERLSGSQAPALYALSLLVVFLCLAALYESWS------------IPVSVMLVVPLGIIGALLAT 915 (1044)
T ss_pred CCCceEeeccHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 568899988763 222232222333466778888888877777652 25666677788888888888
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC---
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP--- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~--- 763 (1133)
.++|.+++. ++.+--.+++||-|+|++++++.+++.+ ++.+..+++.++.++-..+|++|++|+++||+-+++..
T Consensus 916 ~~~g~~l~~-~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlmTtltti~gllPla~~~g~g 994 (1044)
T TIGR00915 916 SLRGLSNDV-YFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILMTSLAFILGVVPLAISTGAG 994 (1044)
T ss_pred HHHCCCccH-HHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhcCCC
Confidence 889999996 4556667888999999999999998754 67899999999999999999999999999999776652
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 001173 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKR 804 (1133)
Q Consensus 764 ~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r 804 (1133)
-+..+.+++....|++++.++++++.|++..+..|+.+..+
T Consensus 995 ~~~~~plai~vigGL~~st~ltL~vvP~ly~~~~~~~~~~~ 1035 (1044)
T TIGR00915 995 SGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVRRLFKRKS 1035 (1044)
T ss_pred hHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 35688999999999999999999999999998777755444
No 48
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.00 E-value=1.4e-08 Score=114.24 Aligned_cols=162 Identities=13% Similarity=0.191 Sum_probs=137.3
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchh
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~ 698 (1133)
.++.+|+.+. -...+.++.++|++|+.+-++ | ..++..++.+...++.++|++.++|.+++. .
T Consensus 118 p~~g~~~~~~---~~~a~~~ali~I~lyl~~rF~-~------------~~~l~al~al~~dv~~~l~~l~l~g~~l~~-~ 180 (297)
T PRK13021 118 PQVGQELAEQ---GGLALLVAMLCILGYLSYRFE-W------------RLASGALFALVHDVIFVLAFFALTQMEFNL-T 180 (297)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCCccH-H
Confidence 5777787765 345567888899999877653 3 346778889999999999999999999996 4
Q ss_pred hhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 001173 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1133)
Q Consensus 699 ~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aa 775 (1133)
..+--..++|+.++|.++++.+.++.. ++.+..+++.++..+.-.++++|++|++++.+.+.+..-+.+|.|++...
T Consensus 181 ~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~lrr~l~TslTt~l~llpL~l~G~~~~~~fA~~li 260 (297)
T PRK13021 181 VLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMF 260 (297)
T ss_pred HHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555556788999999999999999764 46789999999999999999999999999999888878899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 001173 776 LAVLLDFLLQITAFVALIVFDF 797 (1133)
Q Consensus 776 iav~~~~l~~lt~fpalL~l~~ 797 (1133)
+|+++..+.++.+-++++.+..
T Consensus 261 ~Gli~gt~sslfva~pl~~~~~ 282 (297)
T PRK13021 261 IGILTGTFSSISVGTSLPELLG 282 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999888877554
No 49
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=98.98 E-value=2.1e-08 Score=131.89 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=137.5
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. .+...........+.++++++++.+.+.|++++ ..++-++.+-+|++.++..+
T Consensus 852 P~g~~~~~~G~~---~~~~~~~~~~~~~~~~ai~lv~lvL~~~f~s~~------------~pliI~~~IPls~~Ga~~~l 916 (1049)
T PRK15127 852 PTGVGYDWTGMS---YQERLSGNQAPALYAISLIVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALLAA 916 (1049)
T ss_pred CCCcEEEeccHH---HHHHhccccHHHHHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHHHH
Confidence 568899998752 222222222223345566666666777777753 25666777888999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH--hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC--
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~--~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1133)
.++|.+++. .+.+--.+++||-|||+++++...++. ..+.+..+++.++.++-..+|++|++|+++||+-+++..
T Consensus 917 ~~~g~~l~~-~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIlmTtlTti~gllPl~l~~G~ 995 (1049)
T PRK15127 917 TFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGA 995 (1049)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 999999996 445555677899999999999998864 358899999999999999999999999999999776653
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 764 -~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
-+..+-+++....|++++.++++++.|+++.+..||.
T Consensus 996 g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~~~~~~ 1033 (1049)
T PRK15127 996 GSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1049)
T ss_pred CHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457789999999999999999999999999876654
No 50
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=98.93 E-value=2.5e-08 Score=125.65 Aligned_cols=165 Identities=14% Similarity=0.252 Sum_probs=136.0
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchh
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~ 698 (1133)
.++.+|+.+. -+.-+++++++|++|+++-+. +..|+.+++..+.-+++++|++.++|++++. .
T Consensus 664 p~vG~el~~~---ai~Al~iAli~IliYI~~RF~-------------~~fa~~avial~hDv~i~~g~~~l~g~~ls~-~ 726 (855)
T PRK14726 664 PAVSGELTMA---ATLGVLAALAAILIYIWIRFE-------------WQFAVGAIIATLHDVILTLGLFVLTGIEFNL-T 726 (855)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHHHHCCCccH-H
Confidence 4677777754 345578899999999876542 2247888999999999999999999999997 4
Q ss_pred hhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 001173 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1133)
Q Consensus 699 ~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aa 775 (1133)
..+.-..++|++++|.+++.+++++.. ++.+..+.+..++.++..-+++|++|++++++.+++...+.++.|++...
T Consensus 727 ~iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~tl~Rii~TslTTll~llpL~l~G~~~i~~fai~li 806 (855)
T PRK14726 727 SIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAML 806 (855)
T ss_pred HHHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 555556788999999999999999753 35566666666777776779999999999999888878899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 776 LAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 776 iav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
+|+++..+.++++-++++.+..+|+
T Consensus 807 ~Gli~gt~sSifvAspll~~~~~~~ 831 (855)
T PRK14726 807 FGVAVGTFSSIYIAAPVLIVFKLRP 831 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999988765443
No 51
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=98.91 E-value=3e-08 Score=130.22 Aligned_cols=175 Identities=10% Similarity=0.094 Sum_probs=136.1
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.|.|+. +++++....-...++++++++++++...+.++ ...++-++++-++++.++..+
T Consensus 845 P~g~~~~~~g~~---~~~~~~~~~l~~~~~iai~li~l~L~~~f~S~------------~~pliI~~tIPls~~G~~~~l 909 (1040)
T PRK10503 845 PADITTQFQGST---LAFQSALGSTVWLIVAAVVAMYIVLGVLYESF------------IHPITILSTLPTAGVGALLAL 909 (1040)
T ss_pred CCCeEEEeccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch------------hhHHHHHHHHHHHHHHHHHHH
Confidence 578999888763 23444333334446677777777777666554 224555667777877777777
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHH--HhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC--
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~--~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1133)
.++|.+++. ++.+--.+++||-|||++++++...+ ..++.++.+++.++.++-..+|++|++|+++||+-+++..
T Consensus 910 ~l~g~~l~~-~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTtltti~gllPlal~~G~ 988 (1040)
T PRK10503 910 MIAGSELDV-IAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTGV 988 (1040)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 889999996 55566667789999999999987664 3468899999999999999999999999999999776642
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 764 -~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~r 798 (1133)
-...+-+++....|++++.++++++.|++..+..+
T Consensus 989 g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~~ 1024 (1040)
T PRK10503 989 GAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLFDR 1024 (1040)
T ss_pred ChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24589999999999999999999999999987643
No 52
>PRK09579 multidrug efflux protein; Reviewed
Probab=98.90 E-value=2e-08 Score=131.71 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=138.4
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. +|..+....-...++++++++++.+.+.+++++ ..++-++++.++++.++..+
T Consensus 825 P~g~~~~~~G~~---~~~~~~~~~l~~~~~~ai~li~lil~~~f~S~~------------~pliI~~~iPla~~G~~~~L 889 (1017)
T PRK09579 825 PEGFAFDYAGAS---RQYVQEGSALWVTFGLALAIIFLVLAAQFESFR------------DPLVILVTVPLSICGALIPL 889 (1017)
T ss_pred CCCcEEEeechH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 678999999874 232232333344567788888888888777752 24555666777777777667
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh--cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC--
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1133)
.++|.+++. .+.+--.+++||-|+|++++++.+++.+ ++.+..+++.++..+-..+|++|++|+++||+-+++..
T Consensus 890 ~i~~~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTtlTti~gllPla~~~g~ 968 (1017)
T PRK09579 890 FLGVSSMNI-YTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGA 968 (1017)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 788999996 4555556788999999999999987643 48899999999999999999999999999999766542
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 001173 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 801 (1133)
Q Consensus 764 -~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~ 801 (1133)
-...+-+++....|++++.++++++.|+++.+..++.+
T Consensus 969 g~~~~~plA~~iigGL~~st~ltL~~iP~ly~l~~~~~~ 1007 (1017)
T PRK09579 969 GAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAKPDA 1007 (1017)
T ss_pred ChHHhCCceeeeehHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 24456789999999999999999999999998766543
No 53
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=98.87 E-value=7.9e-08 Score=126.43 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=138.0
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. .|.+.........+.++++++++.+.+.|++++ ..++-++++-++++.++..+
T Consensus 850 P~g~~~~~~G~~---~~~~~~~~~~~~~~~~al~lv~~il~~~f~s~~------------~pliI~~~IPlal~G~l~~L 914 (1037)
T PRK10555 850 PNGFGLEWTAMS---YQERLSGAQAPALYAISLLVVFLCLAALYESWS------------VPFSVMLVVPLGVIGALLAT 914 (1037)
T ss_pred CCCcEEEecChH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhH------------hHHHHHHHHHHHHHHHHHHH
Confidence 678999999863 222222122223345666667777777777652 25666677888888888888
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccC---C
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI---P 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s---~ 763 (1133)
.++|.+++. .+.+--.+++||-|+|+++++...++. +.+.+..+++.++-++-..+|++|++|+++||+-+++. .
T Consensus 915 ~i~g~~l~~-~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlmTtltti~gllPlal~~g~g 993 (1037)
T PRK10555 915 WMRGLENDV-YFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGAG 993 (1037)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999996 455555677899999999999998865 46789999999999999999999999999999976654 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 764 ~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
-+..+-+++....|++++.++++++.|++..+..+|.
T Consensus 994 ~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~~~~ 1030 (1037)
T PRK10555 994 SGSQHAVGTGVMGGMISATILAIFFVPLFFVLVRRRF 1030 (1037)
T ss_pred hHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3568899999999999999999999999999866654
No 54
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.82 E-value=3e-07 Score=103.39 Aligned_cols=174 Identities=14% Similarity=0.267 Sum_probs=140.6
Q ss_pred EEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001173 612 TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (1133)
Q Consensus 612 ~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~G 691 (1133)
++.+-| ..+.+|+.+. -+.-++++++.|++|+.+-+ ++..++++++..+-=++.++|+++++|
T Consensus 120 ~~~~Vg-p~vg~eL~~~---~~~Al~~alv~I~iYV~~RF-------------e~~~a~aaI~al~hDvii~~g~~slfg 182 (305)
T COG0341 120 SVEFVG-PTVGKELARQ---GLLALLLALVGILIYVFFRF-------------EWRFALAAILALLHDVIITLGFFSLFG 182 (305)
T ss_pred eeeEEC-cchHHHHHHH---HHHHHHHHHHHHHHhhheee-------------ehHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444 4678888875 34556778888999887532 233489999999999999999999999
Q ss_pred eeecchhhhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHH
Q 001173 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768 (1133)
Q Consensus 692 i~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr 768 (1133)
+++++ .+...-..++|-.++|.+++..|.+|.. +..+..|.+..++..+-.-...|++|++++.+++.+..=+.++
T Consensus 183 iE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~~~~l~~fgg~~l~ 261 (305)
T COG0341 183 IEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSLK 261 (305)
T ss_pred eeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 99997 3444445677888999999999999853 4567778999999988888899999999887777665669999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001173 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDK 803 (1133)
Q Consensus 769 ~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~ 803 (1133)
+|++..-+|++.+..-++.+-+++|.+..+|++..
T Consensus 262 ~fa~~llvGii~gtySSifiA~pll~~~~~~~~~~ 296 (305)
T COG0341 262 DFALALLVGIIAGTYSSIFIAAPLLLLLGKRREKK 296 (305)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhc
Confidence 99999999999999999999999999887766544
No 55
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=98.79 E-value=1.2e-07 Score=124.83 Aligned_cols=175 Identities=10% Similarity=0.085 Sum_probs=137.5
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. ++.++....-...++++.++|++.+.+.++++. ..++-++++-++++.++..+
T Consensus 831 P~g~~~~~~G~~---~~~~~~~~~l~~~~~~al~li~liL~~~F~S~~------------~pliI~~tIPlal~G~~~~L 895 (1025)
T PRK10614 831 PSTVRGSFAGTA---QVFQETMNSQLILILAAIATVYIVLGILYESYV------------HPLTILSTLPSAGVGALLAL 895 (1025)
T ss_pred CCCeEEEeccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 678999999863 334444333444567778888888877776652 24555667778888888778
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hc-CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC--
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~-~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1133)
.++|.+++. .+.+--.+++||-|+|+++++..+.+. ++ +.+..+++.++-.+-..+|++|++|+++|++-+++..
T Consensus 896 ~l~g~~l~~-~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTtlTti~GllPlal~~g~ 974 (1025)
T PRK10614 896 ELFNAPFSL-IALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGD 974 (1025)
T ss_pred HHHCCCccH-HHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 888999996 455555678899999999999888754 34 7889999999998888999999999999999776642
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 764 -~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~r 798 (1133)
-...+-+|+....|++++.+++++++|++..+..+
T Consensus 975 g~~~~~pmAi~iigGL~~sT~ltL~vvP~lY~~~~~ 1010 (1025)
T PRK10614 975 GAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDR 1010 (1025)
T ss_pred CHHHhCCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 24688999999999999999999999999998644
No 56
>PRK09577 multidrug efflux protein; Reviewed
Probab=98.79 E-value=2.4e-07 Score=121.96 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=135.7
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. ++..+....-...+.++++++++.+.+.|++|+ ..++.++++-++++.++..+
T Consensus 846 P~g~~~~~~G~~---~~~~~~~~~l~~~~~~ai~li~lvl~~~F~S~~------------~plii~~~iPl~l~G~~~~l 910 (1032)
T PRK09577 846 PAGIGYAWSGQS---FEERLSGAQAPMLFALSVLVVFLALAALYESWS------------IPFAVMLVVPLGVIGAVLGV 910 (1032)
T ss_pred CCCcEEEeccHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhhHHHHHHHHHH
Confidence 678999999863 233333222233456777788877777777752 25566667777777777777
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC---
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP--- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~--- 763 (1133)
.++|.+++. ...+--.+++||-|+|+++++...++. .++.+..+++.++.++-..+|++|++|+++||+-+++..
T Consensus 911 ~l~g~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlmTtltti~gllPla~~~g~g 989 (1032)
T PRK09577 911 TLRGMPNDI-YFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAA 989 (1032)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHccCCC
Confidence 888999996 445555688899999999999998864 468899999999999999999999999999999776652
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001173 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFD 796 (1133)
Q Consensus 764 ~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~ 796 (1133)
-...+-+++....|++++.++++++.|++..+.
T Consensus 990 ~~~~~pla~~iigGL~~sT~lTL~vvP~ly~l~ 1022 (1032)
T PRK09577 990 SGAQIAIGTGVLGGVITATVLAVFLVPLFFVVV 1022 (1032)
T ss_pred hHHhcCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345677999999999999999999999999875
No 57
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=98.78 E-value=1.7e-07 Score=123.86 Aligned_cols=174 Identities=15% Similarity=0.212 Sum_probs=140.0
Q ss_pred CCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 607 ~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
-++++++.+.|+. ++.++....-...+++++++|++.+.+.++++. . .++-++++-++++.++-.
T Consensus 842 lp~g~~~~~~G~~---~~~~e~~~~l~~~~~~al~liyliL~~~F~S~~---------~---PliIm~~IPla~~G~~~~ 906 (1021)
T PF00873_consen 842 LPPGYTIEFGGEA---EEMQESFSSLGFALILALLLIYLILAAQFESFR---------Q---PLIIMLTIPLALIGVLLG 906 (1021)
T ss_dssp SSTTEEEEEECHH---HHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSSS---------T---HHHHHTTHHHHHHHHHHH
T ss_pred CCCCCcccCCchH---HHHHhhhcchhhhHHHHHHHHHHHHHHHhccee---------e---eEEEEeccchhhHHHHHH
Confidence 3689999999974 344444444455577888899998888888763 2 344455666677777766
Q ss_pred HhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh--cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC-
Q 001173 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 763 (1133)
Q Consensus 687 ~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~- 763 (1133)
+.++|.+++. ...+--.+++||-|.|+++++..+++.+ .+.+..+++.++-++=..+|++|++|+++|++-+++..
T Consensus 907 l~i~g~~l~~-~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlmTtlTti~G~lPla~~~g 985 (1021)
T PF00873_consen 907 LFITGQPLSF-MSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILMTTLTTILGMLPLALGIG 985 (1021)
T ss_dssp HHHTTBEBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhccccccc-cceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhhhhccccccccccC
Confidence 7889999996 5555666788999999999999998864 58889999999999999999999999999999777754
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001173 764 --MPACRVFSMFAALAVLLDFLLQITAFVALIVFD 796 (1133)
Q Consensus 764 --~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~ 796 (1133)
-+..+-+++....|++++.+++++++|++..+.
T Consensus 986 ~g~~~~~pla~~iigGL~~stllTL~vvP~ly~l~ 1020 (1021)
T PF00873_consen 986 EGAEFWQPLAIVIIGGLLFSTLLTLIVVPVLYSLF 1020 (1021)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999998763
No 58
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=98.77 E-value=3.6e-07 Score=112.10 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhcc--cc
Q 001173 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG--VD 712 (1133)
Q Consensus 635 ~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIG--vD 712 (1133)
.++=+.+++.+.+.+.|+++| | +++-++++-+|++.+|-+|..+|+..|.. -+-=|.++|| ||
T Consensus 339 ~LiEg~vlV~iVl~lFLgn~R--------s----Ali~~~~lPLS~li~f~~M~~~gi~~NlM---SLGGlAIaiG~~VD 403 (1027)
T COG3696 339 TLIEGSVLVIIVLALFLGNFR--------S----ALIVIISLPLSLLIAFIVMNFFGISANLM---SLGGLAIAIGAMVD 403 (1027)
T ss_pred HHHhhhHHHHHHHHHHhccHH--------H----HHHHHHHHHHHHHHHHHHHHHcCCcchhh---cccchheeeeeeec
Confidence 455566666666666778764 2 67778888899999999999999999862 3333344455 79
Q ss_pred ceEehHH-HHHHHh----cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hhccCCchh--HHHHHHHHHHHHHHHHHH
Q 001173 713 NMCILVH-AVKRQQ----LELPLETRISNALVEVGPSITLASLSEVLAFA-VGSFIPMPA--CRVFSMFAALAVLLDFLL 784 (1133)
Q Consensus 713 ~~f~l~~-~~~~~~----~~~~~~e~i~~al~~~g~si~ltslt~~~~F~-~~~~s~~p~--vr~F~l~aaiav~~~~l~ 784 (1133)
.+++++. +|++-. .+..+-+.+.++.++++++++++.+..++.|+ +++++.+.. .+-+++.-.++++.+.++
T Consensus 404 ~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~lII~vvf~PIFtL~GvEGklF~Pma~t~~~al~~a~ll 483 (1027)
T COG3696 404 AAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPIFTLTGVEGKLFAPLAFTKTYALLAALLL 483 (1027)
T ss_pred ceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhhhhheeehhhhheeccccccccchHHHHHHHHHHHHHHH
Confidence 9888875 455532 24556677888999999999999999999998 555555433 566677788888999999
Q ss_pred HHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhhhhc---ccceeehhHHHHHHHH
Q 001173 785 QITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS---LWGVKIAVISLFVAFT 861 (1133)
Q Consensus 785 ~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap~l~---~~~~k~~Vl~~f~~~l 861 (1133)
++|+.|++.++.-|- +. ++++.++.+|+++.|.|.|- +++ ..++++.++.+
T Consensus 484 siT~iPal~~~~i~~----~~--------------------~e~en~l~r~~~r~Y~plL~~~l~~p--~~vl~~A~~~~ 537 (1027)
T COG3696 484 SITFIPALMAYLIRG----IL--------------------PESENPLMRFLIRVYAPLLEFVLKLP--KLVLLGAVLSL 537 (1027)
T ss_pred HHHHHHHHHHHHhcC----CC--------------------cccccHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHH
Confidence 999999999987653 11 13456899999999999543 343 34555666667
Q ss_pred HHHHhhhcccCCCc
Q 001173 862 LASIALCTRIEPGL 875 (1133)
Q Consensus 862 ~~si~g~~~i~~gl 875 (1133)
+++.+..+++--.+
T Consensus 538 ~~s~~l~~~lG~eF 551 (1027)
T COG3696 538 VASLVLLPKLGREF 551 (1027)
T ss_pred HHHHHHHHhcchhc
Confidence 77777766554333
No 59
>COG4258 Predicted exporter [General function prediction only]
Probab=98.66 E-value=1.3e-06 Score=102.36 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=149.9
Q ss_pred HHHHHHhhhchhhHHHHH-HHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH-HhhcCeeecchh
Q 001173 621 IEEELKRESTADAITIVI-SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF-FSAIGVKSTLII 698 (1133)
Q Consensus 621 l~dEl~~~s~~d~~~l~i-s~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl-~~~~Gi~~~~i~ 698 (1133)
..++....++.|+.++.+ +.+.+++.+.+.+|+++ + -+.|+++++.+.++++.- +..|| ++.. +
T Consensus 246 yA~~ar~~~~~d~~~lg~as~~giilLll~vfRS~R----------v--llLgvls~gig~laglvAt~laFg-~lH~-l 311 (788)
T COG4258 246 YADYARQQAKQDISTLGVASLLGIILLLLAVFRSLR----------V--LLLGVLSIGIGALAGLVATLLAFG-ELHL-L 311 (788)
T ss_pred eeHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHhchh----------H--HHHHHHHhhHHHHHHHHHHHHHHh-hHhH-H
Confidence 356777777788887754 45555555666677763 1 244555555555544432 23344 2333 4
Q ss_pred hhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 001173 699 MEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778 (1133)
Q Consensus 699 ~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav 778 (1133)
+.++-+-++|+.+||.+++....++--...++ .+..+|+-|.+++.-+|++++|+.+.++++|.+|.+++|+.+|+
T Consensus 312 Tl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp----~rsaaev~paL~lallTtvlayatmlfs~fpgLrQLa~faivGL 387 (788)
T COG4258 312 TLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDP----WRSAAEVRPALLLALLTTVLAYATMLFSPFPGLRQLAIFAIVGL 387 (788)
T ss_pred HHHhhhhheeecccceeeehhhccCCCCCCCh----hHHHHHhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 66777888999999999986544332111233 23378899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchHHHHHHHHhhhhhcccceeehhHHHHH
Q 001173 779 LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFV 858 (1133)
Q Consensus 779 ~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~f~~~~yap~l~~~~~k~~Vl~~f~ 858 (1133)
..+++....+.|.+.- + ...| ....+.+..+..-+-.-.||.. ..+.+.+
T Consensus 388 ~aAaltvrfllP~L~~----~-a~~r-----------------------pv~~~arlarwlaa~~~~~w~l--a~llVal 437 (788)
T COG4258 388 LAAALTVRFLLPWLCR----G-APVR-----------------------PVPAMARLARWLAAWRRNKWLL--AGLLVAL 437 (788)
T ss_pred HHHHHHHHHhhhhhcC----C-CCCC-----------------------CchHHHHHHHHHHhcccccchh--hhHHHHH
Confidence 9999999999998742 1 1111 0012233222111111111211 1222222
Q ss_pred HHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCC-CCCEEEEEec
Q 001173 859 AFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI-GPPLYFVVKN 910 (1133)
Q Consensus 859 ~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~-g~pvy~Vv~~ 910 (1133)
++......|....+.+-|...+-|-+-.+..--..+....+. +..-.||+.+
T Consensus 438 ~~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~Gapdvry~fvv~g 490 (788)
T COG4258 438 ALASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALTGAPDVRYWFVVYG 490 (788)
T ss_pred HHHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 333333667788888888888888877666555556666543 2233455555
No 60
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.65 E-value=8.7e-07 Score=104.52 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=119.4
Q ss_pred CCCeEEEEccchhHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKREST-ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~-~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
+.++++...+. +...+.+... .-+...+++++++++|+.+.++.+ .+++...+...+.++..+|+
T Consensus 240 P~~~~i~~~~~--v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~------------~~i~~iaL~~~~~v~~~lg~ 305 (417)
T PRK08343 240 PVKLDIEGSGS--VSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREP------------RIALPMVITSLSEVIIILGF 305 (417)
T ss_pred CCCeEEEEccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 44666666543 3333333322 223344566677777766654432 22222223335667788999
Q ss_pred HhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchh
Q 001173 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (1133)
Q Consensus 687 ~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~ 766 (1133)
+.++|.++++ ....--.+++|++||+.+++.++.+++.. .+.++++...++++..+|+.|++|++++|+.+.+.....
T Consensus 306 l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~lpL~~~g~g~ 383 (417)
T PRK08343 306 AALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGD 383 (417)
T ss_pred HHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999997 55566678889999999999987765422 267888999999999999999999999999887767778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 767 CRVFSMFAALAVLLDFLLQITAFVALI 793 (1133)
Q Consensus 767 vr~F~l~aaiav~~~~l~~lt~fpalL 793 (1133)
+|.|++...+|+++..+++=.++--++
T Consensus 384 ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 384 LKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987666655544443
No 61
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.62 E-value=2.6e-06 Score=106.62 Aligned_cols=164 Identities=16% Similarity=0.250 Sum_probs=135.4
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchh
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~ 698 (1133)
.++.+|+.+. -+.-+++++++|++|+++-++ +..|+.+++..+-=++.++|+++++|+++++ .
T Consensus 570 p~vg~el~~~---ai~Av~ia~i~IliYI~~RF~-------------~~fav~AviALiHDvlivlg~fsl~~~e~~l-~ 632 (758)
T PRK13023 570 PTVSEQLSRA---GVLAVILSLIGIFIYVWFRFR-------------WQLALGAVLSTLHDVVILSGMFIVFRMEFNL-W 632 (758)
T ss_pred cchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHHhCceecH-H
Confidence 4677777764 345578899999999987542 2247888888899999999999999999997 3
Q ss_pred hhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHH
Q 001173 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1133)
Q Consensus 699 ~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aa 775 (1133)
....-..++|-+++|.+++..|.||.. +..+.++.+..++.++-.-.+.||+|++++.+++.+..-+.+|.|++.+.
T Consensus 633 ~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqTl~RTI~TS~TTll~~l~L~ifGg~~i~~Fal~ll 712 (758)
T PRK13023 633 SVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALS 712 (758)
T ss_pred HHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 334445677889999999999999863 35678889999999988888999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 001173 776 LAVLLDFLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 776 iav~~~~l~~lt~fpalL~l~~rR 799 (1133)
+||++...-++.+-.+++.+...+
T Consensus 713 iGiv~GtySSIfIAspl~~~~~~~ 736 (758)
T PRK13023 713 VGIIVASYSSIFIAAPLLVQFGLK 736 (758)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcc
Confidence 999999999998888887765433
No 62
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.58 E-value=1.5e-06 Score=110.61 Aligned_cols=168 Identities=15% Similarity=0.264 Sum_probs=134.5
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhc-----Cee
Q 001173 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-----GVK 693 (1133)
Q Consensus 619 ~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~-----Gi~ 693 (1133)
.++.+|+.+. -+.-++++.++|++|+++-+ ++-.|+++++..+-=++.++|+++++ |++
T Consensus 1226 PsVG~EL~~~---AIiALliALi~ILIYI~~RF-------------EW~FAvgAVIALlHDVLItLGifsl~~f~lfgiE 1289 (1403)
T PRK12911 1226 GQLSNKMRTQ---AVIALFGALGIILLYVSLRF-------------EWRYAFSAICALIHDLLATCAVLVALHFFLQKIQ 1289 (1403)
T ss_pred chhHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeE
Confidence 5778888875 35567889999999998754 22347788888887788888877654 999
Q ss_pred ecchhhhHHHHHhhhccccceEehHHHHHHHh---cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHH
Q 001173 694 STLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVF 770 (1133)
Q Consensus 694 ~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F 770 (1133)
+++. ....-.-++|-.+.|++++..|.||.. +..+.++-+-.++.++-.=-+.||+|++++.+++.+..-+.++.|
T Consensus 1290 fdlt-fIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~SINQTLsRTI~TSlTTLLallaLllFGG~sI~~F 1368 (1403)
T PRK12911 1290 IDLQ-AIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNF 1368 (1403)
T ss_pred EcHH-HHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcchhHHHH
Confidence 9973 333334567888999999999999863 456777778888887777778999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001173 771 SMFAALAVLLDFLLQITAFVALIVFDFLRAEDK 803 (1133)
Q Consensus 771 ~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~ 803 (1133)
++.+.+||++...-++.+-++++.+..+|++.+
T Consensus 1369 AlALLIGIIvGTYSSIFIASPLll~l~~~~~~~ 1401 (1403)
T PRK12911 1369 AFIMTIGILLGTLSSLYIAPPLLLFMVRKEERN 1401 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhc
Confidence 999999999999999999999988777766543
No 63
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.57 E-value=9.4e-07 Score=106.26 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceE
Q 001173 636 IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC 715 (1133)
Q Consensus 636 l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f 715 (1133)
-+++++++++|+.+..| ..|+++.+..++.++..+|+++++|.++++ ....--.|.+|++||.-+
T Consensus 349 gl~g~~~V~vfm~~~Yr--------------~~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaNV 413 (506)
T COG0342 349 GLIGLALVAVFMLLYYR--------------LAGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDANV 413 (506)
T ss_pred HHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhcccccE
Confidence 45677777777766543 237888888888999999999999999997 444444677788899999
Q ss_pred ehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001173 716 ILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIV 794 (1133)
Q Consensus 716 ~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~ 794 (1133)
++..|-+++ +.+.+...++...++++..+|+=+.+||+++-+++......+||-|++..++||++.++..+++.=.++.
T Consensus 414 lI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~ 493 (506)
T COG0342 414 LIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLN 493 (506)
T ss_pred EeeHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999987 5689999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhccccc
Q 001173 795 FDFLRAE 801 (1133)
Q Consensus 795 l~~rR~~ 801 (1133)
+..++..
T Consensus 494 ~~~~~~~ 500 (506)
T COG0342 494 LLVGRRR 500 (506)
T ss_pred HHhcccc
Confidence 7655543
No 64
>COG4258 Predicted exporter [General function prediction only]
Probab=98.57 E-value=2.6e-07 Score=107.87 Aligned_cols=152 Identities=20% Similarity=0.249 Sum_probs=113.0
Q ss_pred EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeee
Q 001173 615 FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694 (1133)
Q Consensus 615 f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~ 694 (1133)
|..-.|-.|++-..=..++..+..+.+.++..+.++++.|+. |+..++.+.+++.+.+....+.|+++
T Consensus 630 fvD~ks~~drLfaaYr~~la~~laga~alvl~la~a~rgwRr------------glrvllP~v~a~~~~~A~~a~aGvpl 697 (788)
T COG4258 630 FVDRKSTFDRLFAAYRYVLAGLLAGALALVLCLAVARRGWRR------------GLRVLLPSVLALGCGLAVLAMAGVPL 697 (788)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 444344444544433334444555555666666677776642 67778889999999999999999999
Q ss_pred cchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 001173 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 774 (1133)
Q Consensus 695 ~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~a 774 (1133)
|+ ..-+.-.|++|||++|..++-++- .+..|-+ .+-.++.++++||.+.|.++.+|.+|.++.||+..
T Consensus 698 nL-fhllal~LvlgvG~nYalFfs~~~------~~~ae~l-----ttl~alala~ltTlltfgLLa~Sa~pvLssfG~tl 765 (788)
T COG4258 698 NL-FHLLALVLVLGVGINYALFFSNAG------DPRAEPL-----TTLLALALAMLTTLLTFGLLAFSATPVLSSFGITL 765 (788)
T ss_pred hH-HHHHHHHHHHHcccchhhhhhccc------CCCCchH-----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHhhHHH
Confidence 97 567777899999999998874332 1111111 25567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001173 775 ALAVLLDFLLQITAFV 790 (1133)
Q Consensus 775 aiav~~~~l~~lt~fp 790 (1133)
+.||+++|++..+..|
T Consensus 766 asGiila~vlApL~mp 781 (788)
T COG4258 766 ASGIILAFVLAPLAMP 781 (788)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999988766554
No 65
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.42 E-value=3e-07 Score=114.19 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=144.0
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
.+.+++.+..--.-.+++++....|.+...++-..|+..+.+.. +.+++.+++++.+.++...++++.
T Consensus 303 ~~kv~~~~~~~~~~~~~~~~~~l~ds~la~l~~~~v~~~v~i~t------------~s~f~tf~~~~~i~ls~~~a~f~y 370 (999)
T KOG3664|consen 303 NEKVRVVGIDLDLKNELFNELILTDSLLASLSALLVMASVWIYT------------GSAFITFMSIVAICLSLGVALFFY 370 (999)
T ss_pred ccceeeeehhhhhHHHHHHHHhccchHHHHhccccceeEEEEec------------CcHHHHHHHHHHHHHHhhHHHhhh
Confidence 45566766665555678888888888877766555555443322 245678889999999999998887
Q ss_pred h-hcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-------------------cCCCHHHHHHHHHHHHhHHHHH
Q 001173 688 S-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-------------------LELPLETRISNALVEVGPSITL 747 (1133)
Q Consensus 688 ~-~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-------------------~~~~~~e~i~~al~~~g~si~l 747 (1133)
. .+|+.+-+++..+.-++++|||.||.|.+...|+|.. .....+..+...+.+...+|++
T Consensus 371 ~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l~~~~~ll~~~~~l~~~h~~~smfv 450 (999)
T KOG3664|consen 371 AVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLELSDHTELLENVFALTLRHASFSMFV 450 (999)
T ss_pred eeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccccccccchhHHHHHHhhhhhhhhHHHHH
Confidence 4 4678887777788888999999999999999994421 0123556777788999999999
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 748 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 748 tslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
|++|++.+|++...++.+.+|-|+++|+..+.+++..+++++||..++..++-
T Consensus 451 t~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~SI~~~~~ 503 (999)
T KOG3664|consen 451 TSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASVSIALRLF 503 (999)
T ss_pred HHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999877766543
No 66
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=98.16 E-value=1.3e-05 Score=104.18 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=137.4
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+. ++..+....-...+.+++++|++.+...+.+|. ..+.-++++-++++.++.-+
T Consensus 830 p~g~~~~~~G~~---~~~~~s~~~~~~~~~lai~~v~lvL~~qfeS~~------------~P~~Il~tvPla~iGa~~~L 894 (1009)
T COG0841 830 PSGYTYEWSGES---EQEKEAGGQALLLFALALLVVFLVLAAQYESFS------------IPFIVMLTVPLGLLGALLAL 894 (1009)
T ss_pred CCceEEEecchH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhh------------hhhHHHhhhhHHHHHHHHHH
Confidence 569999999963 344444444555677888888888887777652 24555667778888888888
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCch-
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP- 765 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p- 765 (1133)
.+.|.+++. ...+--.+++||-+.|+++|+....+.+ ++.++.|++.++-..=..+|++|+++.++|++-+++....
T Consensus 895 ~l~g~~~~i-~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMTtla~ilG~iPLal~~g~G 973 (1009)
T COG0841 895 LLTGLPLDV-YAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTSLAAILGVLPLALSTGAG 973 (1009)
T ss_pred HHhCCCCcH-HHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhccccc
Confidence 889999986 5566667888999999999999887764 6899999999999999999999999999999866554333
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001173 766 --ACRVFSMFAALAVLLDFLLQITAFVALIVFDF 797 (1133)
Q Consensus 766 --~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~ 797 (1133)
.-+.+|+....|++++-++++.+.|.+..+..
T Consensus 974 a~~r~~lgi~vigGl~~sT~LtL~~vPv~Y~~~~ 1007 (1009)
T COG0841 974 AESRQPLGIAVVGGLLVATVLTLFVVPVFYVLVE 1007 (1009)
T ss_pred ccccCcceEEEechhHHHHHHHHhhhhhhheeee
Confidence 45677888888999999999999999987654
No 67
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=97.85 E-value=0.00045 Score=84.09 Aligned_cols=133 Identities=19% Similarity=0.166 Sum_probs=114.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHH
Q 001173 667 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 746 (1133)
Q Consensus 667 ~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ 746 (1133)
|-+.+.+.++.+..+.-+|+|++.||+++. +-.|+-...+|||+.-.+|..-.|--.- .++..|...++.++..++.
T Consensus 943 WaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~-i~aViLi~sVGigveFtvhv~l~FlTs~--G~rs~R~s~al~~~F~Pv~ 1019 (1143)
T KOG1935|consen 943 WAAGLIVCSLAIMTVELFGFMGLLGIKLSA-IPAVILIASVGIGVEFTVHVALGFLTAL--GTRSQRASSALQHMFVPVS 1019 (1143)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhceeecc-chhHHHHHHhhhchhhhHHHHHHHHHhh--ccchhHhHHhhhhcchhhh
Confidence 345666777777777888999999999998 5688888889999999999888876542 3567788999999999999
Q ss_pred HHHHHHHHHHHhhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 001173 747 LASLSEVLAFAVGSFIPMPA-CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAED 802 (1133)
Q Consensus 747 ltslt~~~~F~~~~~s~~p~-vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~ 802 (1133)
.-++++.++-+.++++++-- ||.|+..+.+-+.+..+-.+.++|.+|++.+.+.|-
T Consensus 1020 hG~lST~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP~pEl 1076 (1143)
T KOG1935|consen 1020 HGALSTLLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGPKPEL 1076 (1143)
T ss_pred hhHHHHHhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCccc
Confidence 99999999999999998876 699999999999999999999999999998877654
No 68
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00019 Score=88.84 Aligned_cols=177 Identities=15% Similarity=0.199 Sum_probs=133.7
Q ss_pred CCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 607 ~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
-+++..+.|+|+- +.+++.++.-...+.++.+++|+.+.+++++.+ -+++-+..+-+|++.++=.
T Consensus 841 LP~GY~i~~gGQF---E~~qrA~~~L~vvvP~~lllIfvLl~~~f~sv~------------~alli~~~lP~Al~GGv~~ 905 (1027)
T COG3696 841 LPPGYYIEWGGQF---ENLQRANKRLKVVVPVSLLLIFVLLYFAFKSVG------------EALLIFSNLPFALIGGVIA 905 (1027)
T ss_pred CCCceEEEecchh---HHHHHHhhcceehHHHHHHHHHHHHHHHHccch------------HhHHHHhcCcHHHhhhHHH
Confidence 3678999999962 223333333333456788888888888887753 2455555666777777777
Q ss_pred HhhcCeeecchhhhHHHHH-hhhccccceEehHHHHHHH-hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc---
Q 001173 687 FSAIGVKSTLIIMEVIPFL-VLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSF--- 761 (1133)
Q Consensus 687 ~~~~Gi~~~~i~~~viPfL-vLgIGvD~~f~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~--- 761 (1133)
+.+.|..++. ..+++|+ +.|+.+-|.++++..+++. .++.+.+|++.+.-.+--.++++|+++.++|+.-.++
T Consensus 906 l~l~G~~lSv--as~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~lMTa~~~~lGlvPi~~~~g 983 (1027)
T COG3696 906 LALRGFNLSV--AAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKLMTALVILLGLLPILWATG 983 (1027)
T ss_pred hhhcCceEee--hhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHHHHHHHHHHhhhhhhhhcC
Confidence 7888999984 4566665 5689999999999999886 4788899999886555566799999999999985544
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 762 IPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 762 s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
+.-...|-.++..-.|++-+-++++..+||+..+..++.
T Consensus 984 ~GsEV~~plA~vviGGl~tst~LtL~vlPaly~~~~~~~ 1022 (1027)
T COG3696 984 AGSEVMRPLAIVVIGGLVTSTALTLLVLPALYALFGKRR 1022 (1027)
T ss_pred CchHhhccchheeEcceeHHHHHHHHHHHHHHHHHHHhh
Confidence 344557888888899999999999999999999877654
No 69
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=97.58 E-value=0.0019 Score=84.56 Aligned_cols=176 Identities=20% Similarity=0.174 Sum_probs=130.4
Q ss_pred CeEEEEccchhHHHHHHhhhchhhHHHHH-HHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHh
Q 001173 610 NLTLAFSSESSIEEELKRESTADAITIVI-SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFS 688 (1133)
Q Consensus 610 ~l~v~f~~e~sl~dEl~~~s~~d~~~l~i-s~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~ 688 (1133)
...++..|.........+....|...+.+ +..++|+.+.+.++. ...++..+..+.++..+++|+-.
T Consensus 736 ~a~~~l~G~~a~~~d~~~~~~~d~~~~~i~~~~~i~ii~~i~~rs------------~~~~~~li~~v~~s~~~a~~l~~ 803 (937)
T COG2409 736 PAKIYLGGTAAWWLDIRDWLTHDLPLVVIITLCLIFIILLILLRS------------VVAPAVLVGTVLLSYGAALGLSV 803 (937)
T ss_pred CCEEEEechHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHhhhhh
Confidence 34677778777777777777778776644 455666655554433 22345556677788888888743
Q ss_pred -----hcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC
Q 001173 689 -----AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (1133)
Q Consensus 689 -----~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~ 763 (1133)
.+|.++....-.+...+++++|+||.+.++.|++|+......++ +.++++.+|.-++-.++.-+.+|+.+.+++
T Consensus 804 ~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~li~r~ree~~~g~~~~-ii~a~~~tg~Vit~ag~i~~~t~~~l~~s~ 882 (937)
T COG2409 804 LIWQHILGIELHWLVPALSFVVLLAVGSDYNILLISRLREEIGAGLRTG-IIRAMRGTGGVITAAGLIFAATMASLVFSD 882 (937)
T ss_pred hhhhhhcCcceeeehHHHHHHHHHHcCchHHHHHHHHHHHHhccccchh-hhhhhccCCchHHHHHHHHHHHHHHHHHhh
Confidence 35666544222333347889999999999999999864333555 999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcc
Q 001173 764 MPACRVFSMFAALAVLLDFLLQITAFV-ALIVFDFL 798 (1133)
Q Consensus 764 ~p~vr~F~l~aaiav~~~~l~~lt~fp-alL~l~~r 798 (1133)
+..+.+-|...++|++++-++.-++++ |+.++.+|
T Consensus 883 ~~~l~qig~~i~~g~l~dt~v~r~~~vPa~~~l~~~ 918 (937)
T COG2409 883 LRVLGQIGTTIGLGLLLDTLVVRPFMVPAIAALLGR 918 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 999999999999999999888876665 55666554
No 70
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=94.91 E-value=0.0071 Score=63.18 Aligned_cols=97 Identities=26% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCCCCCCCHHHHHHHHHHHH-hhhhh-ccC----ChhHHhhHhhhccccccCCCCCcceEEEeecccCCCe
Q 001173 85 SKVQSLCPTITGNVCCTEDQFDTLRTQVQ-QAIPF-LVG----CPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNL 158 (1133)
Q Consensus 85 ~~l~~~Cp~~~~~~CC~~~Q~~~l~~~~~-~~~~~-~~~----CpaC~~Nf~~~~C~~tCsP~Qs~F~~vt~~~~~~~~~ 158 (1133)
..|...|..+....||+.++...+..... .+..+ ..+ =+.|.+=|.++.|-+-|||++..+ .. . ..+.
T Consensus 16 ~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~~~-~~--~---~~~~ 89 (167)
T PF03024_consen 16 PDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAGHW-QA--E---DRKT 89 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccccc-cc--C---CcCC
Confidence 45677899998899999999999998877 33322 122 379999999999999999999999 21 1 1112
Q ss_pred eEEEEEEEEcchhchHHhhccccCCcCCCCh
Q 001173 159 TVDGIDYYITDTFGQGLYESCKDVKFGTMNT 189 (1133)
Q Consensus 159 ~V~~~~~~v~~~~~~~~ydSCk~v~~~~~~~ 189 (1133)
.+..+- |=++|=+..|+.||+..+...+-
T Consensus 90 ~~~~~P--LC~~~Cd~wf~aCk~d~tc~~~~ 118 (167)
T PF03024_consen 90 RIRGVP--LCASFCDDWFEACKDDYTCGSNW 118 (167)
T ss_dssp -------------------------------
T ss_pred ccCCCC--cCHHHHHHHHHHhhhHHhccCcc
Confidence 355555 88999999999999988765443
No 71
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=91.23 E-value=0.055 Score=70.67 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=111.1
Q ss_pred EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeee
Q 001173 615 FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694 (1133)
Q Consensus 615 f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~ 694 (1133)
|+.--+..+............+.++.+.+|+...+.++-- ++| +++-++...+.++--+|+|.++|+.+
T Consensus 1004 ys~fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~-------~~s----s~i~~~~~~~~~v~l~g~m~~~~I~~ 1072 (1201)
T KOG1933|consen 1004 YSVFYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLD-------VDS----SLIMVLVDEMILVNLVGFMYLWGISL 1072 (1201)
T ss_pred eeeehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccc-------ccc----ceeeeeehhhhhhhHHHHHHhhceee
Confidence 3333334444444333333345566666666655544321 333 33445667778888889999999999
Q ss_pred cchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhhccC--CchhHHHHH
Q 001173 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITL-ASLSEVLAFAVGSFI--PMPACRVFS 771 (1133)
Q Consensus 695 ~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~l-tslt~~~~F~~~~~s--~~p~vr~F~ 771 (1133)
|. ...+--.+-+||+|+...||+|.+.... +.+..+|..+++...|.+++- .++|...+-.++.+. .+-.+..|.
T Consensus 1073 Na-vS~vNlvm~vgi~vef~~hi~~sf~~s~-~~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i~~~~~f~ 1150 (1201)
T KOG1933|consen 1073 NA-VSLVNLVMSVGIAVEFCVHITHSFATSS-GPDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQIFQVFYFR 1150 (1201)
T ss_pred hh-hhhhhhhhhcchhhhHHHHhhcceeecc-CCchhHHHHHHHhccCcceecceeehhcCceEEEeeccccEEEEEeeh
Confidence 97 4555567788999999999999987643 337899999999999987532 234444444444444 444456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001173 772 MFAALAVLLDFLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 772 l~aaiav~~~~l~~lt~fpalL~l~~rR 799 (1133)
++.++.++-+.-- +.|+|.+|++.++-
T Consensus 1151 ~~l~~~l~~a~hG-liflpvlls~~g~~ 1177 (1201)
T KOG1933|consen 1151 MYLGIVLVGALHG-LIFLPVLLSLLGPE 1177 (1201)
T ss_pred HHHHHHHHHheee-eeehhhHHHhcCCc
Confidence 7776666554444 88999999987743
No 72
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=54.91 E-value=6.7 Score=50.25 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=27.0
Q ss_pred HHHHHHHHchhhhccchHHHHHHHHHHHHH
Q 001173 370 MSNFYRKYGKWVARNPTLVLSLSMALVLLL 399 (1133)
Q Consensus 370 L~~~F~~lG~~var~P~~vlli~lll~~~l 399 (1133)
+.|+|+..|+||++|||=||+..+.+++.+
T Consensus 2 ~~rlf~~hg~fcashpweviv~~~tlt~c~ 31 (886)
T TIGR00920 2 LSRLFRAHGQFCASHPWEVIVATLTLTICM 31 (886)
T ss_pred chhHhhhhcchhcCCCceehhhHHHHHHHH
Confidence 568999999999999999999988888765
No 73
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=50.29 E-value=4.4e+02 Score=30.09 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHHHHH
Q 001173 672 GVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLS 751 (1133)
Q Consensus 672 gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ltslt 751 (1133)
.++.+.++.-+++=+-...|+|+=. ..++|.|-|.-|+.-..-..---..-..+++.++.-.+.+.+...++..+-+-
T Consensus 139 ~i~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~~~~~~~~~~~~~r~~~~v~~~ell 216 (305)
T COG3301 139 AILGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTRENPHSTESKFLHRFEIPVVVTELL 216 (305)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHH
Confidence 3444445555555555778999843 56888877777665332211111111122344555667788888999888888
Q ss_pred HHHHHHhh-ccCCchhHHHHHHH
Q 001173 752 EVLAFAVG-SFIPMPACRVFSMF 773 (1133)
Q Consensus 752 ~~~~F~~~-~~s~~p~vr~F~l~ 773 (1133)
...+|+.+ .+-+--+.|.+.-.
T Consensus 217 ~la~f~~l~~~G~~a~~~a~~~a 239 (305)
T COG3301 217 LLAAFFVLLSLGGVAAARALATA 239 (305)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHH
Confidence 88888866 45566666655533
No 74
>PRK02935 hypothetical protein; Provisional
Probab=38.07 E-value=1.2e+02 Score=29.13 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=35.5
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecc
Q 001173 624 ELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696 (1133)
Q Consensus 624 El~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~ 696 (1133)
.+|+.-...+..+.+++++|.+-+. + |...++....++.-++++++|.++..|.|.-.+-
T Consensus 8 KINkiRt~aL~lvfiG~~vMy~Gif--f-----------~~~~~~m~ifm~~G~l~~l~S~vvYFwiGmlStk 67 (110)
T PRK02935 8 KINKIRTFALSLVFIGFIVMYLGIF--F-----------RESIIIMTIFMLLGFLAVIASTVVYFWIGMLSTK 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--h-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3444333334445566666655432 2 2223444455667778888999999999976554
No 75
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=37.79 E-value=96 Score=30.20 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCeeecc
Q 001173 667 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696 (1133)
Q Consensus 667 ~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~ 696 (1133)
++....++.-+++++++.++..|+|.-.+-
T Consensus 37 ~im~ifmllG~L~~l~S~~VYfwIGmlStk 66 (114)
T PF11023_consen 37 IIMVIFMLLGLLAILASTAVYFWIGMLSTK 66 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 344555666688999999999999976554
No 76
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=37.53 E-value=45 Score=30.84 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccccc
Q 001173 296 LYIILVSLFFGWGFFHRKRERSRSFRMKPLV 326 (1133)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1133)
+..+++++++.|+..+.+|+|++.+.+++..
T Consensus 40 I~~iFil~VilwfvCC~kRkrsRrPIYrPvI 70 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCKKRKRSRRPIYRPVI 70 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcccccc
Confidence 3344556666677777777777777776543
No 77
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=37.00 E-value=6.5e+02 Score=28.26 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=28.2
Q ss_pred HhhcCe-eecchhhhHHHHHh--hhccccceEehHHHHHHHh------------cCCCHHHHHHHHHHHHhH
Q 001173 687 FSAIGV-KSTLIIMEVIPFLV--LAVGVDNMCILVHAVKRQQ------------LELPLETRISNALVEVGP 743 (1133)
Q Consensus 687 ~~~~Gi-~~~~i~~~viPfLv--LgIGvD~~f~l~~~~~~~~------------~~~~~~e~i~~al~~~g~ 743 (1133)
+.+.|. +++ ...++|..- +|=...-.-+-.++|.++- -|.++.|+....++++-.
T Consensus 113 lvl~~~~~~~--~r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r~ai~ 182 (250)
T PF03649_consen 113 LVLRGAPWFD--PRYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGATPREAVRPFIRRAIR 182 (250)
T ss_pred HHHcCCCCCC--hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 333344 444 467888743 3333444444455655431 256778876555444433
No 78
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=31.00 E-value=1.9e+02 Score=28.25 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 001173 763 PMPACRVFSMFAALAVLLDFL 783 (1133)
Q Consensus 763 ~~p~vr~F~l~aaiav~~~~l 783 (1133)
..|..+..++..+.++.+..+
T Consensus 89 ~~p~~~~a~~~l~~~~~~~l~ 109 (111)
T PF09946_consen 89 SYPEYTDAGFVLAFSLAFMLI 109 (111)
T ss_pred cChhHhHHHHHHHHHHHHHHH
Confidence 677787777776666655443
No 79
>PTZ00370 STEVOR; Provisional
Probab=30.96 E-value=71 Score=36.10 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=8.1
Q ss_pred HHHHHHHHhhccCC
Q 001173 750 LSEVLAFAVGSFIP 763 (1133)
Q Consensus 750 lt~~~~F~~~~~s~ 763 (1133)
.++++++++++|-|
T Consensus 243 agtAAtaAsaaF~P 256 (296)
T PTZ00370 243 AGTAASAASSAFYP 256 (296)
T ss_pred cchHHHHHHHhhcc
Confidence 34456666666655
No 80
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=30.40 E-value=8.8e+02 Score=27.80 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=16.0
Q ss_pred eEEEEcc-chhHHHHHHhhhchhhHHHHHHH
Q 001173 611 LTLAFSS-ESSIEEELKRESTADAITIVISY 640 (1133)
Q Consensus 611 l~v~f~~-e~sl~dEl~~~s~~d~~~l~is~ 640 (1133)
+-.++.. ++++.+++.+.....+...++++
T Consensus 75 ~G~S~~~~~~~V~~~i~~~l~~Tl~l~~~a~ 105 (306)
T PRK09471 75 FGPSFKYKDYSVNDLVASSFPVSAKLGAAAF 105 (306)
T ss_pred CccCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 35788888776554444444333
No 81
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=28.00 E-value=78 Score=27.96 Aligned_cols=48 Identities=15% Similarity=0.474 Sum_probs=28.7
Q ss_pred hHHHHHhhCCCCC---CCCCCCHHHH---------HHHHHHHHhhh-----hhccCChhHHhhHh
Q 001173 83 LSSKVQSLCPTIT---GNVCCTEDQF---------DTLRTQVQQAI-----PFLVGCPACLRNFL 130 (1133)
Q Consensus 83 ~~~~l~~~Cp~~~---~~~CC~~~Q~---------~~l~~~~~~~~-----~~~~~CpaC~~Nf~ 130 (1133)
....+...--++. +..||-.... +..+.+++.+. .++.-||+|..+|+
T Consensus 21 ~~~l~~~~g~~~~~~~~~~CCG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~C~~~lr 85 (85)
T PF02754_consen 21 LRKLLNKLGIEVVIPENQQCCGAPGYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCPSCYMQLR 85 (85)
T ss_pred HHHHHHHcCceeeecCCCCCCChHHHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeChhHHHhhC
Confidence 3444454444432 4689977654 33334444443 47789999998875
No 82
>PF13323 HPIH: N-terminal domain with HPIH motif
Probab=25.94 E-value=38 Score=34.99 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=33.1
Q ss_pred HHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccc
Q 001173 368 GYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIR 405 (1133)
Q Consensus 368 ~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~ 405 (1133)
+.+.+.+..++++.++||.-+|++.+++....-+|++.
T Consensus 2 k~vt~~l~~lsr~aa~hPIHtIvv~aLLAS~aYlsvle 39 (153)
T PF13323_consen 2 KQVTKPLQALSRFAARHPIHTIVVTALLASTAYLSVLE 39 (153)
T ss_pred ccccHHHHHHHHHHccCCCeehHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999998888888774
No 83
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=25.42 E-value=1.1e+03 Score=27.35 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=37.0
Q ss_pred hhhhHHHHHhhhccc-cceEehHHH---------HHHH--hcCCCHH-HHHHHHHHHHhHHHHHHHHHHHHHHHhh-c--
Q 001173 697 IIMEVIPFLVLAVGV-DNMCILVHA---------VKRQ--QLELPLE-TRISNALVEVGPSITLASLSEVLAFAVG-S-- 760 (1133)
Q Consensus 697 i~~~viPfLvLgIGv-D~~f~l~~~---------~~~~--~~~~~~~-e~i~~al~~~g~si~ltslt~~~~F~~~-~-- 760 (1133)
+-..++|.+.|++.- .....++.+ |-+. .+|.+.. --.+++++.+..++. |.+...++++++ +
T Consensus 180 ~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~~H~lrNaliP~i-t~~~~~~~~ll~Gavi 258 (317)
T COG0601 180 LKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVI-TVLGLQLGGLLGGAVV 258 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCCcceehHHhhhHhhHHHHH-HHHHHHHHHHHhCHhH
Confidence 356789999888653 222222211 2221 1355544 334578887777664 444333444332 2
Q ss_pred ---cCCchhHHHHHH
Q 001173 761 ---FIPMPACRVFSM 772 (1133)
Q Consensus 761 ---~s~~p~vr~F~l 772 (1133)
+-..|.+-.+-+
T Consensus 259 vE~iF~~PGiG~l~~ 273 (317)
T COG0601 259 VETVFSWPGLGRLLV 273 (317)
T ss_pred hhhhcCCCChHHHHH
Confidence 345555544443
No 84
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=25.24 E-value=3.1e+02 Score=32.24 Aligned_cols=7 Identities=29% Similarity=0.658 Sum_probs=3.5
Q ss_pred hhccccc
Q 001173 707 LAVGVDN 713 (1133)
Q Consensus 707 LgIGvD~ 713 (1133)
=|.|+|+
T Consensus 200 kGfgld~ 206 (344)
T PF04123_consen 200 KGFGLDD 206 (344)
T ss_pred HhcCcHH
Confidence 3555554
No 85
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.38 E-value=9e+02 Score=33.55 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=4.6
Q ss_pred HHHHHHHHhhcC
Q 001173 642 VMFAYISLTLGD 653 (1133)
Q Consensus 642 lmf~y~~~~l~~ 653 (1133)
++.+|++++|.+
T Consensus 32 llAlfL~lALiS 43 (1355)
T PRK10263 32 LFAVWLMAALLS 43 (1355)
T ss_pred HHHHHHHHHHHh
Confidence 333333334433
No 86
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=22.10 E-value=4.3e+02 Score=32.89 Aligned_cols=29 Identities=28% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173 770 FSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1133)
Q Consensus 770 F~l~aaiav~~~~l~~lt~fpalL~l~~r 798 (1133)
|.+-.|+.+....++.+.++|.+....+|
T Consensus 156 ~~~~~Alll~~~ll~~lli~P~~~~~~~~ 184 (573)
T COG4987 156 FSIPLALLLGLILLLLLLIIPTLFYRAGR 184 (573)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666677777788888766544
No 87
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.92 E-value=3.4e+02 Score=34.75 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhcCeee
Q 001173 675 LVMLSVLGSVGFFSAIGVKS 694 (1133)
Q Consensus 675 ~v~lsv~~s~Gl~~~~Gi~~ 694 (1133)
..+.++++++=.-++||...
T Consensus 399 ~gi~sii~G~lyG~fFG~~~ 418 (646)
T PRK05771 399 LGISTIIWGLLTGSFFGFSL 418 (646)
T ss_pred HHHHHHHHHHHHHhHhcCcc
Confidence 33444555443346777554
No 88
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=21.43 E-value=7.7e+02 Score=31.71 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhcC------eeecchhhhHHHHHhhhccccceEehHHHHHHHhcCCCHHHHHHHHHHHHhH
Q 001173 674 VLVMLSVLGSVGFFSAIG------VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGP 743 (1133)
Q Consensus 674 l~v~lsv~~s~Gl~~~~G------i~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~~~~~~e~i~~al~~~g~ 743 (1133)
++.+++++..+.+..++. .+.. -..+.--.++|+-+.-.+.++.+|.-.. +..+-++++++ +++|+
T Consensus 298 vs~~l~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iGl~~g~lI~~~TeYyTs~-~~~PVr~IA~a-s~tG~ 369 (682)
T PF03030_consen 298 VSSILSIILFFFLTYWLLGFSFFGSGIS--WWGLFGCVLIGLVAGVLIGFITEYYTSY-SYRPVREIAEA-SETGP 369 (682)
T ss_dssp HHHHHHHHHHHHHHHHHSEETTEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHH-T-TSHHHHHHHHH-GGG-H
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCchHHHHHHH-hCcCh
Confidence 344455555555544443 1222 1233334555666666666777776433 33344455544 44444
No 89
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.25 E-value=1.6e+02 Score=27.56 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhc
Q 001173 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGL 403 (1133)
Q Consensus 365 ~~~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl 403 (1133)
......++.-.....+|..|||..+++.+.+.+++++-+
T Consensus 53 ~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 53 QAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 456667777788889999999999999888777776543
Done!