Query 001173
Match_columns 1133
No_of_seqs 430 out of 2158
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qnt_A Niemann-PICK C1-like pr 100.0 1.8E-68 6.1E-73 577.2 14.3 235 44-285 5-263 (265)
2 3gkj_A Niemann-PICK C1 protein 100.0 1.3E-66 4.6E-71 553.3 9.1 213 50-267 2-230 (232)
3 4dx5_A Acriflavine resistance 99.7 8.8E-15 3E-19 191.4 30.3 262 608-899 318-599 (1057)
4 2v50_A Multidrug resistance pr 99.7 4.5E-15 1.5E-19 193.8 25.5 261 608-898 318-598 (1052)
5 3aqp_A Probable secdf protein- 99.6 2.4E-14 8.3E-19 179.4 19.9 154 633-800 275-429 (741)
6 3ne5_A Cation efflux system pr 99.6 2.7E-14 9.2E-19 186.7 18.6 233 608-877 323-570 (1054)
7 3aqp_A Probable secdf protein- 99.4 1.2E-12 4.1E-17 164.1 20.4 174 609-800 551-727 (741)
8 4dx5_A Acriflavine resistance 99.4 2.3E-12 8E-17 168.6 21.9 177 608-800 852-1033(1057)
9 3ne5_A Cation efflux system pr 99.4 2.8E-12 9.6E-17 167.7 16.1 177 607-799 857-1048(1054)
10 2v50_A Multidrug resistance pr 99.3 5.8E-12 2E-16 164.6 15.5 175 608-799 851-1030(1052)
11 2kxh_B Peptide of FAR upstream 29.7 32 0.0011 24.3 2.3 21 1078-1098 6-26 (31)
No 1
>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens}
Probab=100.00 E-value=1.8e-68 Score=577.23 Aligned_cols=235 Identities=32% Similarity=0.623 Sum_probs=199.9
Q ss_pred CccCCCCcCeeecccCCCCCC-------CCcccCCCCCCCCCCChhhHHHHHhhCCCCC---CC-CCCCHHHHHHHHHHH
Q 001173 44 GEVKHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GN-VCCTEDQFDTLRTQV 112 (1133)
Q Consensus 44 ~~~~~~~~~C~~~g~Cg~~~~-------~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~---~~-~CC~~~Q~~~l~~~~ 112 (1133)
.+.+|++|+|+|||+||++++ |+++||+||++|++++++++++|+++||+++ +. +|||++|+++|++||
T Consensus 5 ~~~~~~~g~C~~yg~Cg~~~~~~~~~~~~~~l~C~~n~~a~~~~~~~~~~L~~~Cp~~~~~~~~~~CC~~~Ql~~L~~nl 84 (265)
T 3qnt_A 5 YTTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASL 84 (265)
T ss_dssp SCCCCCTTBCSEEEEEECCTTSCTTSCCCCCEEEECCCBCEECCHHHHHHHHHHSGGGCCSSSCEESCCHHHHHHHHHHH
T ss_pred ccCccCCCcceEecccCCCccccccccCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCCHHHHHHHHHHH
Confidence 345799999999999999886 8999999999999999999999999999976 24 999999999999999
Q ss_pred HhhhhhccCChhHHhhHhhhccccccCCCCCcceEEEeecccC--CCeeEEEEEEEEcchhchHHhhccccCCcCCCChh
Q 001173 113 QQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS--NNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTR 190 (1133)
Q Consensus 113 ~~~~~~~~~CpaC~~Nf~~~~C~~tCsP~Qs~F~~vt~~~~~~--~~~~V~~~~~~v~~~~~~~~ydSCk~v~~~~~~~~ 190 (1133)
++|+++|+|||||++||++|||+|||||+||+||+||++.+.+ ++..|+||+|||+++||+++|||||||+||+||++
T Consensus 85 ~~a~~il~rCPaC~~Nf~~lfC~~TCSP~QS~Fl~vt~t~~~~~~~~~~V~eldy~i~~~fa~~~YdSCKdV~~p~tn~~ 164 (265)
T 3qnt_A 85 SITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATL 164 (265)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHCTTGGGTEEEEEEECCSSSSCCEEEEEEEEEEHHHHHHHHHHHTTCBCTTSSCB
T ss_pred HHHHHHhCcChHHHHHHHHHhcCCCCCCCcccceeeEeecccCCCCcceEEEEEEEECHHHhhhHhhhhcCcccccccch
Confidence 9999999999999999999999999999999999999987643 45569999999999999999999999999999999
Q ss_pred HHhhcCC--CCc--CHHHHHHhhhccCCCCCCCCceeEEecCCCC---CCCCcccCCCCCCCCCCC----CCCccccCCC
Q 001173 191 ALDFIGG--GAQ--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAP---ELSGMIPMNVSAYSCADG----SLGCSCGDCT 259 (1133)
Q Consensus 191 am~~~gg--~a~--~~~~~l~flG~~~~~~~~~sPfqInf~~~~~---~~~~~~~~~~~~~~C~~~----~~~CsC~dC~ 259 (1133)
|||+||| ||+ ||++||+|||+++ +++|||||||++++. .+.+|+|||..+++|||. .++|||+||+
T Consensus 165 Am~l~cG~~gA~~Cn~~~wl~flG~~~---n~~sPFqInf~~~~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~ 241 (265)
T 3qnt_A 165 AVGTMCGVYGSALCNAQRWLNFQGDTG---NGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCA 241 (265)
T ss_dssp TTGGGSTTSCSSSCCHHHHHHHHTCTT---TTCCSSEEEEEEECHHHHTTSSCCCBCCCCCCTTSCCTTTCCCCCTTTCG
T ss_pred hhhhhcCCcCcCCCCHHHHHHHhcccc---CCCCCeEEEeeccCCCccCCCCceECCCCCcCCCCCCCCCCCCEecccch
Confidence 9999998 787 9999999999985 379999999997532 125899999999999975 4699999999
Q ss_pred CCCCCCCCCCCCCCCCCceEeecCCc
Q 001173 260 SSPVCSSTAPPPHKSSSCSVKMGSLN 285 (1133)
Q Consensus 260 ~~~sCp~~~~~~~~~~~c~~~~~~~~ 285 (1133)
+ |||.+|++|+.+.+ |+||||+
T Consensus 242 ~--sCp~~p~~p~~~~p--~~I~gld 263 (265)
T 3qnt_A 242 A--SCPAIARPQALDST--FYLGQMP 263 (265)
T ss_dssp G--GCCC-------------------
T ss_pred h--hcCCCCCCCCCCCC--cEEEeee
Confidence 9 99987777666665 7777775
No 2
>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A*
Probab=100.00 E-value=1.3e-66 Score=553.30 Aligned_cols=213 Identities=35% Similarity=0.720 Sum_probs=193.3
Q ss_pred CcCeeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC-C--CCCCCHHHHHHHHHHHHhhhhhccCChhHH
Q 001173 50 EEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-G--NVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (1133)
Q Consensus 50 ~~~C~~~g~Cg~~~~~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~-~--~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (1133)
.++|+|||+||++++|+++||+||++|++++++++++|+++||+++ + .+|||++|+++|++||++|+++|+|||||+
T Consensus 2 ~~~C~~yg~Cg~~~~~~~l~C~~~~~a~~~~~~~~~~L~~~Cp~~~~~~~~~CC~~~Ql~~L~~nl~~a~~il~rCPaC~ 81 (232)
T 3gkj_A 2 AQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCF 81 (232)
T ss_dssp -CCCSEEEEEEEEETTEEEEEECCSCCEECCGGGHHHHHHHCGGGCSTTCEESCCHHHHHHHHHTTHHHHHHHTTCHHHH
T ss_pred CCcceecCccCCCCCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCHHHHHHHHHHHHHHHHhcCcChHHH
Confidence 4699999999998899999999999999999999999999999986 2 499999999999999999999999999999
Q ss_pred hhHhhhccccccCCCCCcceEEEeecc----c--CCCeeEEEEEEEEcchhchHHhhccccCCcCCCChhHHhhc-CCCC
Q 001173 127 RNFLNLFCELTCSPNQSLFINVTSVSK----V--SNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI-GGGA 199 (1133)
Q Consensus 127 ~Nf~~~~C~~tCsP~Qs~F~~vt~~~~----~--~~~~~V~~~~~~v~~~~~~~~ydSCk~v~~~~~~~~am~~~-gg~a 199 (1133)
+||++|||+|||||+||+||+||++.+ . +++..|+||+|||+++||+++|||||||+||+||++|||+| ||||
T Consensus 82 ~Nf~~l~C~~TCSP~QS~Fl~vt~t~~~~d~~~~~~~~~V~ev~y~v~~~fa~~~YdSCkdV~~p~t~~~Am~l~CG~ga 161 (232)
T 3gkj_A 82 YNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDA 161 (232)
T ss_dssp HHHHHHHHHHHHCTTHHHHEEEEEEEEEECTTTCCEEEEEEEEEEEECHHHHHHHHHHHTTCBCTTSSSBTHHHHSSSCT
T ss_pred HHHHHHhcCCCCCCccccceeeEeccccccccccCCcceEEEEEEEECHHHHHHHhhhhhCcccccccchhHHhhcCCCC
Confidence 999999999999999999999999865 2 23356999999999999999999999999999999999999 5578
Q ss_pred c--CHHHHHHhhhccCCCCCCCCceeEEecCCCCCCCCcccCCCCCCCCCC----CCCCccccCCCCCCCCCCC
Q 001173 200 Q--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCAD----GSLGCSCGDCTSSPVCSST 267 (1133)
Q Consensus 200 ~--~~~~~l~flG~~~~~~~~~sPfqInf~~~~~~~~~~~~~~~~~~~C~~----~~~~CsC~dC~~~~sCp~~ 267 (1133)
+ ||++||+|||+++ ||+|||||||++++....||+|||..+++||+ ..++|||+||++ |||.+
T Consensus 162 ~~C~~~~wl~flG~~~---ng~sPfqInf~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~--sCp~~ 230 (232)
T 3gkj_A 162 DACQATNWIEYMFNKD---NGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSI--VCGPK 230 (232)
T ss_dssp TTCCHHHHHHHHTCGG---GSSSSSEEEEEECSSCBTTBCCBCCCCCCTTSCSBTTBCCCCGGGCGG--GC---
T ss_pred CCCCHHHHHHHhcccc---CCCCCeEEEeeccCCCCccceECCCCCcCCCCCCCCCCCCEECccchh--hcCCC
Confidence 7 9999999999985 36899999999876555789999999999985 457999999999 99953
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.66 E-value=8.8e-15 Score=191.38 Aligned_cols=262 Identities=15% Similarity=0.154 Sum_probs=185.3
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.++.+ +.+++....-...++++++++++++.+.+++++ .+++.++++.+++++++|++
T Consensus 318 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~------------~~li~~~~ip~~~~~~~~~l 383 (1057)
T 4dx5_A 318 PSGLKIVYPYDTT--PFVKISIHEVVKTLVEAIILVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFAVL 383 (1057)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5677777666543 222333233334567788888888888877642 36778889999999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-c-CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC--
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~-~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1133)
.++|+++|. ++.+...+++|++|||++|+++++++.. . +.+..+++.+++++.+.++++|++|++++|+.+++++
T Consensus 384 ~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~~g~ 462 (1057)
T 4dx5_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1057)
T ss_dssp HHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCHH
T ss_pred HHhCCcHHH-HHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999997 5667778899999999999999998863 3 8999999999999999999999999999999999887
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCc---chHHHHHHHH
Q 001173 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKP---GLLARYMKEV 839 (1133)
Q Consensus 764 -~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~---~~l~~f~~~~ 839 (1133)
.+.++.|++..++|+++++++.+|++|+++.+..++....++. +.. ........ ..+.+++++.
T Consensus 463 ~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~y~~~ 530 (1057)
T 4dx5_A 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHG--------EGK----KGFFGWFNRMFEKSTHHYTDS 530 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCS--------TTC----CSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--------ccc----hhHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999999999999999877654321100 000 00000000 0112222221
Q ss_pred hhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccc---------cCCCCCchHhH---HHHHHHhhcC
Q 001173 840 HATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLR 899 (1133)
Q Consensus 840 yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~---------~~lP~dSyl~~---y~~~~~~~f~ 899 (1133)
..+.++++ ..+++++++++++++++..+++.++-+. .-+|.++.+.+ ..+.+++.+.
T Consensus 531 -l~~~lr~~--~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~ 599 (1057)
T 4dx5_A 531 -VGGILRST--GRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYL 599 (1057)
T ss_dssp -HHHHHHSC--THHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 33455553 4566667777888888888887776433 24666664433 3344444444
No 4
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.65 E-value=4.5e-15 Score=193.85 Aligned_cols=261 Identities=15% Similarity=0.150 Sum_probs=184.4
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.++.+ +++++....-...++++++++++.+.+.+++++ .+++.++++.+++++++|++
T Consensus 318 p~g~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~lv~lvl~~~~~s~~------------~~li~~~~ip~s~~~~~~~l 383 (1052)
T 2v50_A 318 PQGMKVVYPYDTT--PVVSASIHEVVKTLGEAILLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFGVL 383 (1052)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5688988877642 233333333333567788888888888887642 36778889999999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH--hcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCc-
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~--~~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~- 764 (1133)
.++|+++|. ++.+...+++|++|||++|++++|++. ..+.+..+++.++.++.+.++++|++|+++||+.+++++.
T Consensus 384 ~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~~ 462 (1052)
T 2v50_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGS 462 (1052)
T ss_dssp HHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCHH
T ss_pred HHhCCCHHH-HHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999997 567777889999999999999999875 3688999999999999999999999999999999999987
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcch---HHHHHHHH
Q 001173 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGL---LARYMKEV 839 (1133)
Q Consensus 765 --p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~---l~~f~~~~ 839 (1133)
+.++.||+..++|+++++++.+|+.|+++++..++....+.. .+.. ......... +.+++++
T Consensus 463 ~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~y~~- 529 (1052)
T 2v50_A 463 TGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHG-------EHKG-----GFFGWFNRMFLSTTHGYER- 529 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------------CHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccc-------cccc-----hhhhHHHHHHHHHHHHHHH-
Confidence 489999999999999999999999999998766542110000 0000 000000001 1122222
Q ss_pred hhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCccccc---------CCCCCchHh---HHHHHHHhhc
Q 001173 840 HATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQ---GYFNNISEHL 898 (1133)
Q Consensus 840 yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~---------~lP~dSyl~---~y~~~~~~~f 898 (1133)
...+.++++ ..+++++++++++++++..+++.++.+.. -+|+++.+. +..+.+++++
T Consensus 530 ~l~~~l~~~--~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t~~~~~~ie~~l 598 (1052)
T 2v50_A 530 GVASILKHR--APYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYL 598 (1052)
T ss_dssp HHHHHHHHC--SSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHCCCccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 133445554 34555567777778888888877765542 477776543 3334444444
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.58 E-value=2.4e-14 Score=179.41 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhcccc
Q 001173 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1133)
Q Consensus 633 ~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD 712 (1133)
...++++++++++++.+.+| + ..++..++.+.+++++++|++.++|.++|. ++.+.+.+++|++||
T Consensus 275 ~~a~~i~~~lv~l~l~l~~r-~------------~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD 340 (741)
T 3aqp_A 275 IRSALIGTLAIFLLIFAYYG-P------------HLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVD 340 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-h------------HHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHh
Confidence 34467788888888877764 2 247888899999999999999999999997 567788999999999
Q ss_pred ceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001173 713 NMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1133)
Q Consensus 713 ~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpa 791 (1133)
|.+|++++|+++. .+.+..+++.+++++++.+|+.|++|++++|+.+.+++.+.+|.||+.+++|++++++..+++.|+
T Consensus 341 ~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~ 420 (741)
T 3aqp_A 341 GNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRH 420 (741)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999874 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccc
Q 001173 792 LIVFDFLRA 800 (1133)
Q Consensus 792 lL~l~~rR~ 800 (1133)
++.+..+|.
T Consensus 421 l~~~~~~~~ 429 (741)
T 3aqp_A 421 LLERLADRG 429 (741)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHhhcC
Confidence 999877653
No 6
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.56 E-value=2.7e-14 Score=186.75 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=169.5
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.++.+ +.+++....-...++++++++++++.+.++++ ..+++.++++.+++++++|++
T Consensus 323 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~------------~~~li~~~~ip~~~~~~~~~l 388 (1054)
T 3ne5_A 323 PEGVEIVTTYDRS--QLIDRAIDNLSGKLLEEFIVVAVVCALFLWHV------------RSALVAIISLPLGLCIAFIVM 388 (1054)
T ss_dssp CTTEEEEEEEETH--HHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSH------------HHHHHHHTTTHHHHHHHHHHH
T ss_pred CCCeEEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------------HHHHHHHHHHHHHHHHHHHHH
Confidence 5678887766543 12222222233345667777777776666654 236788889999999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhc------------CCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL------------ELPLETRISNALVEVGPSITLASLSEVLA 755 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~------------~~~~~e~i~~al~~~g~si~ltslt~~~~ 755 (1133)
.++|+++|. ++.+...+++|++|||++++++++++... +.++.+++.++.++.+++++.|++|++++
T Consensus 389 ~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~s~ltt~~~ 467 (1054)
T 3ne5_A 389 HFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLS 467 (1054)
T ss_dssp HHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHHHHHHHHHT
T ss_pred HHhCCCHHH-HHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 56666778999999999999999987642 67789999999999999999999999999
Q ss_pred HHhhccCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCCCCCCCCCCcchH
Q 001173 756 FAVGSFIP---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLL 832 (1133)
Q Consensus 756 F~~~~~s~---~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l 832 (1133)
|+.+.+++ .+.++.|++..++|+++++++.+|+.|+++++..++....+.+ ......+
T Consensus 468 f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~-------------------~~~~~~~ 528 (1054)
T 3ne5_A 468 FIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESS-------------------NPLNRFL 528 (1054)
T ss_dssp TGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC-------------------------------CHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-------------------cHHHHHH
Confidence 99998887 6779999999999999999999999999999876653211100 0011223
Q ss_pred HHHHHHHhhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCccc
Q 001173 833 ARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ 877 (1133)
Q Consensus 833 ~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~ 877 (1133)
.+++++. ..+.++++ ..+++++++++++++++..+++.++-+
T Consensus 529 ~~~y~~~-~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~f~P 570 (1054)
T 3ne5_A 529 IRVYHPL-LLKVLHWP--KTTLLVAALSVLTVLWPLNKVGGEFLP 570 (1054)
T ss_dssp HHHHHHH-HHHHTSST--HHHHHHHHHHHHHTHHHHTTCCBCSSC
T ss_pred HHHHHHH-HHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCceECC
Confidence 3333332 34556654 445666777788888888888777543
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.45 E-value=1.2e-12 Score=164.07 Aligned_cols=174 Identities=16% Similarity=0.283 Sum_probs=143.0
Q ss_pred CCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHh
Q 001173 609 KNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFS 688 (1133)
Q Consensus 609 ~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~~ 688 (1133)
...++.+.|. .+.+|+.+ .-+..++++++++++|+.+.+ + +..++..++.+.+++++++|+++
T Consensus 551 ~~~~~~~vG~-~~~~~~~~---~~~~al~lali~i~l~l~~~F-s------------~~~~l~~l~~l~~~~~~~~g~l~ 613 (741)
T 3aqp_A 551 TVLASETVGP-AIGEELRR---NAVMAVLVGLGLILLYVAFRF-D------------WTFGVASILAVAHDVAIVAGMYS 613 (741)
T ss_dssp CCCEEEEECH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHS-C------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777775 34444433 223445677777777776654 3 33578889999999999999999
Q ss_pred hcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhc---CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCch
Q 001173 689 AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL---ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1133)
Q Consensus 689 ~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~---~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~p 765 (1133)
++|++++. .+.+...+++|+++||.+|++++|+++.+ +.+.++++.+++++.+.+++.|++|++++|+.+++++.+
T Consensus 614 l~g~~l~~-~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Tsltt~~g~~~L~~~g~~ 692 (741)
T 3aqp_A 614 LLGLEFSI-PTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGS 692 (741)
T ss_dssp HHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHhcCccH-HHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999997 44445556799999999999999998742 569999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 766 ~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
.++.||+..++|++++.+..+++.|+++.+..+|+
T Consensus 693 ~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~ 727 (741)
T 3aqp_A 693 VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRR 727 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999876654
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.43 E-value=2.3e-12 Score=168.55 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=149.6
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl~ 687 (1133)
++++++.+.|+ .++..+....-...+.++++++++++.+.+++++ .++..++.+.++++.++|.+
T Consensus 852 p~g~~~~~~G~---~~~~~~~~~~~~~~~~~a~~~i~l~L~~~f~s~~------------~~l~~l~~i~~~~~~~~~~l 916 (1057)
T 4dx5_A 852 PTGVGYDWTGM---SYQERLSGNQAPSLYAISLIVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALLAA 916 (1057)
T ss_dssp CTTEEEEECHH---HHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTCSS------------THHHHHTTHHHHHHHHHHHH
T ss_pred CCCCEEEecCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 67899999886 2233333233344567788888888888887763 36777888899999999999
Q ss_pred hhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH-h-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCC--
Q 001173 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-Q-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1133)
Q Consensus 688 ~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~-~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1133)
.++|.+++. .+.+...+++|++|||.+++++++++. + .+.+..+++.++..+.+.+|++|++|+++||+.++++.
T Consensus 917 ~~~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~~g~ 995 (1057)
T 4dx5_A 917 TFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGA 995 (1057)
T ss_dssp HHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCST
T ss_pred HHHCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999997 566666788899999999999999887 4 68899999999999999999999999999999998884
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001173 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1133)
Q Consensus 764 -~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~ 800 (1133)
.+.++.||+..++|+++++++.+++.|+++.+..++.
T Consensus 996 g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~ 1033 (1057)
T 4dx5_A 996 GSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1057)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999877654
No 9
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.36 E-value=2.8e-12 Score=167.74 Aligned_cols=177 Identities=10% Similarity=0.074 Sum_probs=146.0
Q ss_pred CCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 607 ~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
.++++++.+.|+.....+.. ..-...+.++++++++++.+.++++ ..++..++++.+++++++|.
T Consensus 857 ~p~g~~~~~~G~~~~~~~~~---~~~~~~~~~al~li~l~L~~~f~S~------------~~~l~il~~ip~~~~g~~~~ 921 (1054)
T 3ne5_A 857 LKPGTSVAFSGQFELLERAN---HKLKLMVPMTLMIIFVLLYLAFRRV------------GEALLIISSVPFALVGGIWL 921 (1054)
T ss_dssp CCTTCEEEEEEHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHTCCH------------HHHHHHHTTSHHHHHHHHHH
T ss_pred CCCCcEEEeCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCH------------HHHHHHHHHHHHHHHHHHHH
Confidence 35789999988643333322 2223346778888888887777664 34677888899999999999
Q ss_pred HhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhc------------CCCHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001173 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL------------ELPLETRISNALVEVGPSITLASLSEVL 754 (1133)
Q Consensus 687 ~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~------------~~~~~e~i~~al~~~g~si~ltslt~~~ 754 (1133)
+.++|.+++. .+.+...+++|++|||.+++++++++... +.+..+++.++..+.+.+|++|++|+++
T Consensus 922 l~l~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltti~ 1000 (1054)
T 3ne5_A 922 LWWMGFHLSV-ATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIA 1000 (1054)
T ss_dssp HHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCccH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCCCCHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999997 56666778899999999999988877643 5678899999999999999999999999
Q ss_pred HHHhhccC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001173 755 AFAVGSFI---PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 755 ~F~~~~~s---~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR 799 (1133)
||+.++++ ..+.++.||+..++|+++++++.+++.|+++.+..+|
T Consensus 1001 g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~ 1048 (1054)
T 3ne5_A 1001 GLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLH 1048 (1054)
T ss_dssp HHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTTT
T ss_pred HHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888 4788999999999999999999999999999987554
No 10
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.32 E-value=5.8e-12 Score=164.61 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=143.9
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhH-HHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 001173 608 SKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1133)
Q Consensus 608 ~~~l~v~f~~e~sl~dEl~~~s~~d~~-~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~gvl~v~lsv~~s~Gl 686 (1133)
++++++.+.|+.. +..+. ..++. .+.++++++++++.+.+++++ .++..++.+.++++.++|.
T Consensus 851 p~g~~~~~~G~~~---~~~~~-~~~~~~~~~~a~~~i~l~l~~~f~s~~------------~~l~il~~ip~~~~g~~~~ 914 (1052)
T 2v50_A 851 PKGVGYSWTGLSY---EERLS-GSQAPALYALSLLVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALLA 914 (1052)
T ss_dssp CTTEEEEECTHHH---HTTTT-CCCSHHHHHHHHHHHHHHHHHHTTCSS------------TTHHHHTHHHHHHTTHHHH
T ss_pred CCCcEEEecchHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcchH------------HHHHHHHHHHHHHHHHHHH
Confidence 5789999988632 22222 23443 567888888888888888763 2456677888889999999
Q ss_pred HhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHh-cCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCc-
Q 001173 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (1133)
Q Consensus 687 ~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~ltslt~~~~F~~~~~s~~- 764 (1133)
+.++|.+++. .+.+...+++|++|||.+|+++++++.. .+.+..+++.++.++.+.+|++|++|+++||+.++++..
T Consensus 915 ~~~~g~~l~~-~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~~~ 993 (1052)
T 2v50_A 915 TSMRGLSNDV-FFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGA 993 (1052)
T ss_dssp HHHTTCCBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCCST
T ss_pred HHHHCCCccH-HHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999996 5666677889999999999999999864 578999999999999999999999999999999998877
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001173 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1133)
Q Consensus 765 --p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR 799 (1133)
+.++.||+..++|++++.++.+++.|+++.+..++
T Consensus 994 g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 994 GSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred ChhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999876653
No 11
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=29.67 E-value=32 Score=24.33 Aligned_cols=21 Identities=10% Similarity=0.371 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHHHHhhcc
Q 001173 1078 RQIDYVNSMRAAREFSSRVSD 1098 (1133)
Q Consensus 1078 ~~~d~i~a~~~~r~ia~~~~~ 1098 (1133)
..+.|.+|++.+|+||.+|..
T Consensus 6 ~~daFadA~~RaRQIaAKig~ 26 (31)
T 2kxh_B 6 VNDAFKDALQRARQIAAKIGG 26 (31)
T ss_dssp CSSHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999853
Done!