Query 001174
Match_columns 1132
No_of_seqs 218 out of 311
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2011 Sister chromatid cohes 100.0 2E-171 4E-176 1552.4 75.4 915 72-1024 78-1019(1048)
2 COG5537 IRR1 Cohesin [Cell div 100.0 5.2E-45 1.1E-49 417.6 47.4 506 74-625 83-653 (740)
3 PF08514 STAG: STAG domain ; 100.0 2.6E-29 5.6E-34 245.8 12.3 113 151-263 4-118 (118)
4 PF12717 Cnd1: non-SMC mitotic 97.1 0.0026 5.6E-08 67.2 9.7 93 291-390 1-93 (178)
5 KOG2011 Sister chromatid cohes 96.4 0.0095 2.1E-07 76.5 9.3 308 777-1104 726-1043(1048)
6 PF01602 Adaptin_N: Adaptin N 96.3 0.2 4.3E-06 61.0 20.1 298 289-627 125-441 (526)
7 COG5537 IRR1 Cohesin [Cell div 96.2 0.0069 1.5E-07 72.9 6.0 128 273-421 162-300 (740)
8 PF12717 Cnd1: non-SMC mitotic 96.0 0.17 3.6E-06 53.6 15.0 88 330-423 1-90 (178)
9 KOG2023 Nuclear transport rece 95.9 3 6.5E-05 51.8 25.8 101 287-391 183-287 (885)
10 PF12348 CLASP_N: CLASP N term 95.3 0.44 9.6E-06 51.7 15.4 107 282-390 98-207 (228)
11 PF13646 HEAT_2: HEAT repeats; 94.9 0.13 2.8E-06 46.9 8.3 77 288-384 10-87 (88)
12 PRK09687 putative lyase; Provi 94.5 0.15 3.3E-06 57.9 9.2 118 287-421 100-217 (280)
13 PRK13800 putative oxidoreducta 93.8 0.19 4.1E-06 66.0 9.5 117 284-422 748-864 (897)
14 PRK13800 putative oxidoreducta 93.8 0.31 6.8E-06 63.9 11.4 20 325-344 629-648 (897)
15 KOG1020 Sister chromatid cohes 93.7 0.23 5E-06 65.6 9.6 139 282-422 1231-1402(1692)
16 PRK09687 putative lyase; Provi 93.7 0.32 7E-06 55.3 9.9 119 289-421 65-184 (280)
17 KOG0414 Chromosome condensatio 93.2 0.36 7.8E-06 62.7 10.0 163 178-406 904-1074(1251)
18 PTZ00429 beta-adaptin; Provisi 92.9 0.23 5E-06 63.4 7.9 99 284-391 111-210 (746)
19 cd00020 ARM Armadillo/beta-cat 92.2 0.53 1.1E-05 44.7 7.7 97 290-388 19-119 (120)
20 PF12830 Nipped-B_C: Sister ch 91.6 0.47 1E-05 50.8 7.2 65 357-421 5-70 (187)
21 PF13646 HEAT_2: HEAT repeats; 90.7 0.49 1.1E-05 43.2 5.5 77 325-418 7-85 (88)
22 cd00020 ARM Armadillo/beta-cat 90.6 1.2 2.6E-05 42.2 8.4 107 313-421 3-116 (120)
23 KOG1059 Vesicle coat complex A 90.3 8.4 0.00018 48.4 16.7 94 270-390 273-366 (877)
24 PF12348 CLASP_N: CLASP N term 90.3 1.3 2.8E-05 48.1 9.2 60 288-347 141-207 (228)
25 PF10508 Proteasom_PSMB: Prote 89.9 2.5 5.3E-05 52.1 12.2 98 291-390 51-149 (503)
26 PF12719 Cnd3: Nuclear condens 87.5 3.5 7.6E-05 47.2 10.7 141 278-420 27-180 (298)
27 PF04826 Arm_2: Armadillo-like 87.4 2.9 6.2E-05 47.1 9.6 96 290-388 25-123 (254)
28 COG5218 YCG1 Chromosome conden 86.6 14 0.00031 45.6 15.0 189 166-382 65-293 (885)
29 KOG2025 Chromosome condensatio 86.5 19 0.00042 45.4 16.3 134 277-417 44-185 (892)
30 PLN03200 cellulose synthase-in 85.2 74 0.0016 45.6 22.6 126 288-422 498-635 (2102)
31 PF01602 Adaptin_N: Adaptin N 84.3 25 0.00054 42.9 16.4 96 289-389 426-524 (526)
32 KOG1240 Protein kinase contain 83.5 14 0.0003 49.0 13.8 217 182-422 501-722 (1431)
33 KOG1525 Sister chromatid cohes 83.4 31 0.00066 47.0 17.5 168 282-475 304-487 (1266)
34 KOG2259 Uncharacterized conser 82.7 1.9 4.2E-05 53.3 5.7 131 284-422 287-472 (823)
35 KOG1820 Microtubule-associated 82.1 25 0.00055 45.8 15.5 113 273-390 332-444 (815)
36 PF12333 Ipi1_N: Rix1 complex 82.0 2.5 5.5E-05 40.9 5.3 54 290-343 23-100 (102)
37 PF12755 Vac14_Fab1_bd: Vacuol 80.7 7.8 0.00017 37.3 8.0 88 298-389 9-96 (97)
38 PF10508 Proteasom_PSMB: Prote 80.0 8.8 0.00019 47.4 10.3 99 290-390 89-190 (503)
39 COG5096 Vesicle coat complex, 79.7 4.9 0.00011 51.4 8.1 99 283-390 97-196 (757)
40 TIGR02270 conserved hypothetic 78.3 9.6 0.00021 45.9 9.6 107 288-420 96-202 (410)
41 KOG2259 Uncharacterized conser 77.7 6.5 0.00014 49.0 7.9 143 273-425 368-530 (823)
42 PF13513 HEAT_EZ: HEAT-like re 76.7 7.7 0.00017 32.6 6.0 55 331-387 1-55 (55)
43 KOG2025 Chromosome condensatio 75.8 37 0.00081 43.0 13.5 209 164-396 58-301 (892)
44 KOG1077 Vesicle coat complex A 75.0 2.6E+02 0.0056 36.0 20.3 90 293-391 129-218 (938)
45 KOG1240 Protein kinase contain 74.0 20 0.00044 47.6 11.1 177 316-512 461-679 (1431)
46 KOG1949 Uncharacterized conser 73.7 22 0.00047 44.9 10.8 99 288-390 230-332 (1005)
47 PF13513 HEAT_EZ: HEAT-like re 71.2 4.4 9.6E-05 34.1 3.2 53 292-344 1-55 (55)
48 PF02985 HEAT: HEAT repeat; I 70.3 5.1 0.00011 30.1 3.0 27 320-346 3-29 (31)
49 KOG0414 Chromosome condensatio 68.6 9.3 0.0002 50.4 6.6 127 286-422 933-1061(1251)
50 PF12755 Vac14_Fab1_bd: Vacuol 68.5 9.5 0.00021 36.7 5.2 74 271-346 21-96 (97)
51 KOG1949 Uncharacterized conser 67.7 17 0.00037 45.8 8.2 116 188-347 216-332 (1005)
52 PF11935 DUF3453: Domain of un 67.6 11 0.00023 42.1 6.2 65 325-390 1-73 (239)
53 KOG2032 Uncharacterized conser 65.4 32 0.00069 42.0 9.7 134 284-418 264-409 (533)
54 KOG1061 Vesicle coat complex A 65.3 13 0.00029 47.1 6.8 105 277-391 85-191 (734)
55 PTZ00429 beta-adaptin; Provisi 64.8 4.4E+02 0.0095 34.6 36.4 158 253-422 33-205 (746)
56 PF14664 RICTOR_N: Rapamycin-i 64.4 26 0.00056 41.8 8.9 88 299-390 4-98 (371)
57 PF02985 HEAT: HEAT repeat; I 64.1 11 0.00023 28.4 3.7 28 363-390 3-30 (31)
58 COG5096 Vesicle coat complex, 63.5 65 0.0014 41.7 12.5 151 252-418 35-188 (757)
59 COG5218 YCG1 Chromosome conden 61.6 1E+02 0.0022 38.6 12.9 107 308-417 81-191 (885)
60 TIGR02270 conserved hypothetic 61.4 48 0.001 40.0 10.5 111 284-421 60-172 (410)
61 KOG1020 Sister chromatid cohes 61.2 91 0.002 42.9 13.4 99 283-387 860-958 (1692)
62 KOG1293 Proteins containing ar 61.0 36 0.00078 42.8 9.3 100 290-390 429-534 (678)
63 smart00229 RasGEFN Guanine nuc 59.6 15 0.00032 36.3 4.9 51 293-343 70-125 (127)
64 PF08389 Xpo1: Exportin 1-like 53.2 98 0.0021 30.7 9.7 49 291-341 99-148 (148)
65 KOG4653 Uncharacterized conser 51.1 73 0.0016 41.4 9.8 134 289-423 738-916 (982)
66 PF12765 Cohesin_HEAT: HEAT re 50.0 17 0.00037 29.7 2.9 41 301-341 2-42 (42)
67 KOG1060 Vesicle coat complex A 48.6 7.7E+02 0.017 32.5 19.5 117 291-417 84-201 (968)
68 KOG2149 Uncharacterized conser 47.9 83 0.0018 37.6 9.1 81 307-390 48-129 (393)
69 cd03572 ENTH_epsin_related ENT 47.7 21 0.00047 35.9 3.8 47 299-347 22-68 (122)
70 KOG1851 Uncharacterized conser 46.5 1.1E+02 0.0023 42.4 10.6 107 285-394 1495-1603(1710)
71 KOG1062 Vesicle coat complex A 46.4 1.4E+02 0.003 38.8 11.1 123 224-391 17-210 (866)
72 PF14584 DUF4446: Protein of u 45.7 1.5E+02 0.0033 31.1 9.7 61 228-288 19-89 (151)
73 KOG1242 Protein containing ada 44.5 5.4E+02 0.012 32.6 15.6 87 325-422 224-321 (569)
74 PF10363 DUF2435: Protein of u 42.4 83 0.0018 30.1 6.7 61 326-390 12-73 (92)
75 PF12719 Cnd3: Nuclear condens 40.8 6.1E+02 0.013 29.0 16.3 201 336-565 2-211 (298)
76 PF05402 PqqD: Coenzyme PQQ sy 40.2 47 0.001 29.1 4.5 43 74-117 19-61 (68)
77 smart00638 LPD_N Lipoprotein N 39.5 1.8E+02 0.0039 36.4 11.1 119 291-421 410-541 (574)
78 PF13251 DUF4042: Domain of un 38.4 97 0.0021 33.4 7.3 116 302-418 23-167 (182)
79 COG1413 FOG: HEAT repeat [Ener 37.8 1.2E+02 0.0027 34.8 8.7 109 289-421 85-205 (335)
80 PF14664 RICTOR_N: Rapamycin-i 35.7 3E+02 0.0065 32.9 11.5 131 290-424 120-268 (371)
81 KOG2160 Armadillo/beta-catenin 35.2 3.3E+02 0.0071 32.3 11.3 99 288-390 93-197 (342)
82 KOG4653 Uncharacterized conser 35.1 5.7E+02 0.012 33.9 14.0 166 216-387 788-962 (982)
83 COG5219 Uncharacterized conser 33.0 23 0.00049 45.9 1.6 92 288-385 56-151 (1525)
84 cd06224 REM Guanine nucleotide 32.7 25 0.00054 34.2 1.7 27 291-317 63-89 (122)
85 KOG1525 Sister chromatid cohes 32.6 44 0.00095 45.6 4.3 119 292-418 273-398 (1266)
86 PF12460 MMS19_C: RNAPII trans 32.5 9E+02 0.019 29.1 15.1 113 270-390 186-299 (415)
87 PF08064 UME: UME (NUC010) dom 30.4 1.6E+02 0.0035 28.7 6.8 86 312-406 3-98 (107)
88 KOG2160 Armadillo/beta-catenin 30.2 6.2E+02 0.013 30.1 12.4 135 288-424 134-281 (342)
89 PF05004 IFRD: Interferon-rela 29.9 9.4E+02 0.02 28.0 20.3 101 289-392 142-260 (309)
90 PF02178 AT_hook: AT hook moti 29.7 23 0.00049 22.2 0.5 10 1042-1051 2-11 (13)
91 smart00384 AT_hook DNA binding 29.6 29 0.00062 25.7 1.0 15 1041-1055 1-15 (26)
92 PF08767 CRM1_C: CRM1 C termin 29.5 2.3E+02 0.0049 33.1 9.0 85 291-375 133-229 (319)
93 KOG0943 Predicted ubiquitin-pr 28.3 95 0.0021 41.6 5.8 69 891-960 1525-1597(3015)
94 PLN03200 cellulose synthase-in 28.3 3.1E+02 0.0067 39.8 11.1 130 291-420 622-759 (2102)
95 KOG1060 Vesicle coat complex A 27.9 3.8E+02 0.0082 35.1 10.7 127 287-421 152-312 (968)
96 COG5098 Chromosome condensatio 27.2 1.2E+02 0.0027 38.6 6.4 66 319-389 348-415 (1128)
97 KOG1820 Microtubule-associated 27.1 1.8E+02 0.0039 38.3 8.2 158 252-419 269-437 (815)
98 PF11698 V-ATPase_H_C: V-ATPas 26.9 1.1E+02 0.0023 31.0 4.9 56 291-346 57-115 (119)
99 PF14500 MMS19_N: Dos2-interac 26.0 2.1E+02 0.0046 32.5 7.7 82 320-407 2-87 (262)
100 KOG2973 Uncharacterized conser 25.4 1.7E+02 0.0037 34.2 6.7 97 289-390 14-112 (353)
101 PF01347 Vitellogenin_N: Lipop 25.4 60 0.0013 40.8 3.6 116 291-421 448-585 (618)
102 PF11701 UNC45-central: Myosin 24.7 63 0.0014 33.7 3.0 97 288-388 15-116 (157)
103 KOG0946 ER-Golgi vesicle-tethe 24.3 2.4E+02 0.0053 36.7 8.2 51 370-420 132-190 (970)
104 COG5240 SEC21 Vesicle coat com 24.2 1.5E+02 0.0032 37.2 6.2 95 290-389 443-555 (898)
105 PF13251 DUF4042: Domain of un 23.4 4.6E+02 0.01 28.3 9.2 121 270-391 21-176 (182)
106 PF05531 NPV_P10: Nucleopolyhe 23.2 3.4E+02 0.0073 25.4 6.9 51 226-276 12-66 (75)
107 KOG1059 Vesicle coat complex A 23.0 1.5E+02 0.0032 38.2 6.0 63 322-390 149-211 (877)
108 KOG0211 Protein phosphatase 2A 22.0 2.5E+02 0.0055 36.7 8.1 132 285-420 486-620 (759)
109 PF05734 DUF832: Herpesvirus p 21.5 9E+02 0.02 27.2 11.2 98 554-657 16-117 (228)
110 KOG2023 Nuclear transport rece 21.2 3.6E+02 0.0079 34.6 8.7 107 308-421 169-281 (885)
111 PF05918 API5: Apoptosis inhib 20.9 1.8E+03 0.039 28.1 18.9 302 363-754 62-394 (556)
112 KOG0211 Protein phosphatase 2A 20.2 4.5E+02 0.0098 34.5 9.8 133 284-419 243-378 (759)
No 1
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-171 Score=1552.43 Aligned_cols=915 Identities=30% Similarity=0.483 Sum_probs=818.3
Q ss_pred cchhhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCeecCccccCCCChhHHHHHHHHHHhcCCcc
Q 001174 72 SIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE 151 (1132)
Q Consensus 72 ~~~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~a~Gc~~~It~~~~~~~d~~~ii~~l~e~~~~~~~~ 151 (1132)
.+.++||.+|+.++..++++|++|++.|++|++.||++||||||+||||++.||++|++++|+.+++..|++.|.++..+
T Consensus 78 ~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es~ 157 (1048)
T KOG2011|consen 78 FDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERESG 157 (1048)
T ss_pred cChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhhc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999986677
Q ss_pred ccc-ccccccchhHHHHHHHHHHHHHHhhcc-CCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 001174 152 DYQ-SSKRKELKNFKDNLVSFWDNLVVECQN-GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKM 229 (1132)
Q Consensus 152 dy~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~-~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~ 229 (1132)
||| .++||.||+||.|||.||.+||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||+||.+
T Consensus 158 DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~ 237 (1048)
T KOG2011|consen 158 DYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALN 237 (1048)
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886 567889999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHcccCC-CccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhh
Q 001174 230 LGAQRETTQRQLNAEKKKRVE-GPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILS 308 (1132)
Q Consensus 230 l~~~~~~~qRQleaEk~K~~~-~~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~ 308 (1132)
|+.+.+++|||||+|++|.+. +.|+++|..+++++|+++++|++||++||++|||||||||+|+||++||++||.||.+
T Consensus 238 Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~ 317 (1048)
T KOG2011|consen 238 LSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS 317 (1048)
T ss_pred HHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh
Confidence 999999999999999988654 4599999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHH
Q 001174 309 YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLL 388 (1132)
Q Consensus 309 yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~ 388 (1132)
||++|++++||||+||+|||++++||+.||++|++||.++++.++|++||+|||+|||||| |+|.+|+|.|++|+..+.
T Consensus 318 yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~~ 396 (1048)
T KOG2011|consen 318 YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCLL 396 (1048)
T ss_pred ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 888888888888877777
Q ss_pred h--cCCCCCCChhhHHhhhcCCChHHHHHHHHHHHHHHHHhhhcCcccCCCC-CCCCchhhHHhHHHHHHHhhcCCCchh
Q 001174 389 R--HQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKG-KDNDSSEVHLGRMLQILREFSADPILS 465 (1132)
Q Consensus 389 ~--~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~f~~~~~~~ 465 (1132)
. .|+|+++||..||.||||.+|++|+|||+|++.++++...+....+++. .....+...+..++.++.++ ..|.|+
T Consensus 397 ~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~-~l~~~~ 475 (1048)
T KOG2011|consen 397 LSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEES-ELHQHA 475 (1048)
T ss_pred HhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhh-hhhhhH
Confidence 7 6999999999999999999999999999999999998654331111111 11122233445556666654 346788
Q ss_pred hHHHHhhcc-ccccCCChHHHHHHHcCCCC--CCCCCchhhHHHHHHHHHHHHHH-hccCCCCCCCCCCccchhhhhhhh
Q 001174 466 IYVIDDVWE-YMKAMKDWKCIISMLLDENP--LIDLNDDDATNLIRLLSASVKKA-VGERIVPASDNRKPYYNKAQKEVF 541 (1132)
Q Consensus 466 ~ylVDsLwd-~~~~lkDWe~m~~lLL~D~~--~~~L~d~~e~~LieiL~asVrqa-~ge~~~~~~~~rk~~~~~~~k~~~ 541 (1132)
+|+||++|+ ....++||+||.++||.... +..+++.+++.|+|+|++++||+ .|++|+|+.+++|...+.++.+.+
T Consensus 476 ~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~~~~ 555 (1048)
T KOG2011|consen 476 AYLVDSLFDSLDFLLKDWACMTSLLLDKLLPQGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKEDADL 555 (1048)
T ss_pred HHHHHHHHHhhHHHhcccHHHHHhhcccccchhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHHHHH
Confidence 999999999 56789999999999998853 34789999999999999999975 599999998889988899999899
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 001174 542 ENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAI 621 (1132)
Q Consensus 542 ~~~~~~iT~~li~~LP~LL~Ky~aD~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al 621 (1132)
.+++.++|+++++.+|+|+.||.+|.+++++|++||+||+++.|+.+|++++|.++++++..++.+|.+.+||++|+++|
T Consensus 556 ~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~~~~ 635 (1048)
T KOG2011|consen 556 EEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCDKPY 635 (1048)
T ss_pred HHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchh--hHHHHHhhhHhHHHHHHHHHHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhh
Q 001174 622 KFCSAESQG--ELQDSARKNLKDVEDKLIAKLKSAIKA-VLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT 698 (1132)
Q Consensus 622 ~~L~~~~~~--~l~~~a~~~l~~L~d~lv~~l~~~~~~-~~~~~~~~~ll~~L~Rl~~l~~~~~l~~~~l~~~l~~ll~~ 698 (1132)
+++|.++.. ..+++++.++.++.++.++.....+.. ..++++.|+++++|+|++.|++.+++..|++|+.+...++.
T Consensus 636 ~~l~~~els~~~~~di~r~~~~dl~~~~~~~il~~f~~~~~~~~~~~~~l~~lk~~~~~q~~~~~~~~~l~~~l~~~l~e 715 (1048)
T KOG2011|consen 636 EFLCYEELSKITDKDIERSNLYDLFDTKYDKILDIFLLFIRDEDDEYAVLSRLKRLASFQNSIDLLKWDLFKALAESLHE 715 (1048)
T ss_pred HHHhhHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 999998443 447888887655555555444333322 33778899999999999999999999999999999999986
Q ss_pred --cCCCCHHHHHHHHHHHHHHHhhcccccccccCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhhhhhhHHH
Q 001174 699 --FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCT 776 (1132)
Q Consensus 699 --~~~l~~e~v~~al~~~~~~l~W~l~~l~~~~~~~~~~~~~L~~~r~~f~~~l~~~L~~~~~~~~~~~~~~~~~c~~~~ 776 (1132)
.+++|..++..+++++++.+.|.+..+..+..+.++.+..|+.+++.++..|..++.-....++ +++ +.
T Consensus 716 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~e~l~~f~~~~~~~~~l~~~~~~~~~~ev~--e~~-------~~ 786 (1048)
T KOG2011|consen 716 RINRDPQRCIILFKLQLLGNKLTYDLVKIKNGEVCGAEFLSELRSRSDSMFNLVDEYLEEVNMEVE--EQA-------VR 786 (1048)
T ss_pred hhccCchhhHHHHHHHHhhhhhhhhhhhhccCCCccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHH--HHH-------HH
Confidence 4678999999999999999999999996566778899999999999999999999976322222 344 44
Q ss_pred HHHHHHHHhhccCCCC--cccccCcccCCHHHHHHHHHHh-hHhcccCCCCchhhhhHHHHHH-hhcHHHHHHHHHHHhh
Q 001174 777 ILAEMWCLFRMTNFSS--TKLSRLGYCPDIPVLQKFWKLC-EQQLNISDETEDEDVNKEYIEE-TNRDAVMIAAAKLIAI 852 (1132)
Q Consensus 777 ~l~Dl~~lF~~~~~~~--~~l~~L~y~p~~~~~~~l~~~~-~~~~~~~d~~~d~~~~~e~ie~-~~RR~~La~~cKLi~~ 852 (1132)
..||++++|+.+...+ ..++|++|.|+..+++.+.+|+ .++|...++++ ++...+||. +++|+++|+|||||+|
T Consensus 787 ~~~~~Lii~~~~~~~~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~--~~~~~~Ie~~~~~r~~~a~~~~li~~ 864 (1048)
T KOG2011|consen 787 LGCDRLIIFKVQDMEGKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSEN--TNECLKIEQLHKKRKLLASLAKLILE 864 (1048)
T ss_pred HHhhHHHHhhhhhcccchhccccceechHHHHHHhhhhHHHHHhhhhhcccc--hHHHHHHHHHHHhhhHHhHHHHHHHc
Confidence 4666678888888764 3589999999999999997755 56665554433 223457887 5799999999999999
Q ss_pred CCCCCccccccccccccccCCChHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHhHHHH
Q 001174 853 DSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKD-EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKEL 931 (1132)
Q Consensus 853 ~vvp~~~~Aa~I~khY~k~y~d~gDIIK~tl~k~r~~~-~~~a~~l~~sL~~ly~~~~~~~~~~~~~~~~s~~f~~ikeL 931 (1132)
|++||+ +|++|||||++||++||||+|+|++++|+++ .+||+++.++|+++|. .++|+|
T Consensus 865 ~~~~~~-~a~~~fK~~~~~~~~~gd~~~~~l~k~r~i~~~~~~~~l~~~l~~~~~-------------------~~~~~l 924 (1048)
T KOG2011|consen 865 NKLPMM-EASDIFKMYEKFYNDYGDIIKETLSKAREIDKSEFAKTVDLSLETLFD-------------------TEIKEL 924 (1048)
T ss_pred ccccHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hHHHHH
Confidence 999995 9999999999999999999999999999996 9999999999999996 689999
Q ss_pred HHHhhcccCCcccccchHHHHHHHHhhccccccc-------cccccchHHhhHhhhccCCCcccHHHHHHHHHhhccCCC
Q 001174 932 SSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLD-------APKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVN 1004 (1132)
Q Consensus 932 ArRfaltf~G~d~~K~R~ai~~lHk~GI~FAf~~-------~P~nL~FLei~L~eFs~KLl~qDk~~v~~yl~~~~~~~~ 1004 (1132)
|+|||++| |+|++|+|+||++|||+||.|||.. +|||+.|||| ++|||+| +|||+++++||+++.++++
T Consensus 925 a~r~~~~~-~~~~~~~r~ai~~~~k~~~~~~~~~~~~~~~~~~p~~~flei-l~e~s~k--~Qdkk~~~~~~~k~~~~~~ 1000 (1048)
T KOG2011|consen 925 AKRLALTF-GLDQLKNRFAIAVLHKKGILFALFKKDDDPSMEPPNLAFLEI-LSEFSNK--TQDKKAVLSYLEKIETDHM 1000 (1048)
T ss_pred HHHHHhhc-CHHHHhhHHHHHHHHhhcccceeecCCCCccCCCCCchHHHH-HHHhcch--hhhhhhHhhHHHhhccccC
Confidence 99999999 9999999999999999999999962 7999999999 7999999 9999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHhh
Q 001174 1005 MDEDPSGWRPFKSFVETLRE 1024 (1132)
Q Consensus 1005 ~~~~~~~W~Pl~~Yr~sL~~ 1024 (1132)
+.++ +.|.|+.+|+|||.+
T Consensus 1001 ~~~~-~~~~p~~~~~~~l~~ 1019 (1048)
T KOG2011|consen 1001 PTSR-DPWIPLTSYLNSLEE 1019 (1048)
T ss_pred CCCC-CCCcccccccccccc
Confidence 8877 999999999999966
No 2
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.2e-45 Score=417.65 Aligned_cols=506 Identities=21% Similarity=0.254 Sum_probs=345.4
Q ss_pred hhhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCeecCccccCCCCh-hHHHHHHHHHHhcCCc-c
Q 001174 74 ELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDV-DDVVVALVNLARRGEV-E 151 (1132)
Q Consensus 74 ~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~a~Gc~~~It~~~~~~~d~-~~ii~~l~e~~~~~~~-~ 151 (1132)
++.+|--+...+..++.+...|.+-|.+|...++.+||||++.||||...|+..|+++.|. .+.+.+++--+..+.. +
T Consensus 83 ~~lff~~lldeDv~~e~lsvhwfedY~kn~~kfl~~lINf~L~ccGc~~rv~nfDVqd~dS~~eTLgqIqls~~r~k~fe 162 (740)
T COG5537 83 SRLFFYELLDEDVIREILSVHWFEDYMKNLSKFLNSLINFDLSCCGCLTRVGNFDVQDYDSTYETLGQIQLSILRGKGFE 162 (740)
T ss_pred hHHHHHHhccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHhcccce
Confidence 4445555566788899999999999999999999999999999999999999999986663 4666776654443322 2
Q ss_pred c--c-ccc--ccccchh---HHH--HHHHHHHHHHHhhccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHH
Q 001174 152 D--Y-QSS--KRKELKN---FKD--NLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVT 221 (1132)
Q Consensus 152 d--y-~~s--k~k~~K~---Fr~--n~~eF~~~Lv~~~~~~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~t 221 (1132)
. | +.. |.+..+. |+. .+.+|+..++. ...||.+.+|..+++|+.+||+|++|+||||||+++.-+|+
T Consensus 163 ~~lyly~eNfK~~~rd~~~~F~~~~llveFvs~~~v---~~~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~ 239 (740)
T COG5537 163 VVLYLYDENFKVRFRDVYQDFNIRALLVEFVSEWVV---SVGIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQK 239 (740)
T ss_pred eeeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hceeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHH
Confidence 2 2 222 1111111 222 23333333332 34688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHH
Q 001174 222 SFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQS 301 (1132)
Q Consensus 222 aLv~va~~l~~~~~~~qRQleaEk~K~~~~~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~e 301 (1132)
-||..|..++ ||+++.+..++..++.. .+.+++++|+++||||||+||+|.||.+|+.+
T Consensus 240 ~Lc~qa~~ls------------EKksR~ne~~l~~ln~s---------l~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~ 298 (740)
T COG5537 240 KLCVQAFSLS------------EKKSRMNELALYDLNPS---------LIRDEIKDICDSVFVSRYIDVDDVIRVLCSMS 298 (740)
T ss_pred HHHHHHHHHH------------HHhhhHHHHHHHhhcch---------HHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 9999887555 34444433334433333 38999999999999999999999999999999
Q ss_pred HHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-ccCchhHHHHH
Q 001174 302 LGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCA 380 (1132)
Q Consensus 302 LG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~-~D~D~~Vav~A 380 (1132)
||.|+..+|++|++..||||+||+|+|.+..||+.+++.|..|.....+...++.|.+|||.||+||+ .|+|. ||+.+
T Consensus 299 L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~s 377 (740)
T COG5537 299 LRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICS 377 (740)
T ss_pred HHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHH
Confidence 99999999999999999999999999999999999999999999887777899999999999999999 79999 99999
Q ss_pred HHHHHHHHhcCCCCCCChhhHHhhhcCCChH---HHHHHHHHHHHH---HHHhhhcCcc-------cCCCCCCCCc--hh
Q 001174 381 IGLVKQLLRHQLLPDDDLGPLYDLLIDDPPE---IRRAIGELVYDH---LIAQKFNSSQ-------SGLKGKDNDS--SE 445 (1132)
Q Consensus 381 I~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~---Vr~AAg~fv~~~---l~~~~~~~~~-------~~~~~~~~~~--~~ 445 (1132)
|++|+.|+..|+|++.++..|..++||..|. .+..+.+++++. .+.++.+... +...|-.... .+
T Consensus 378 ik~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~qgse~~f~v~~ 457 (740)
T COG5537 378 IKSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQGSERYFVVCE 457 (740)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHhhhhccchhHH
Confidence 9999999999999999999999999998888 555555555432 2222222110 0000000000 11
Q ss_pred hHHhHHHHHHH-----------------hhcCCCchhhHHHHhhcc---ccccCCCh--HHHHHHHcCCCCCC------C
Q 001174 446 VHLGRMLQILR-----------------EFSADPILSIYVIDDVWE---YMKAMKDW--KCIISMLLDENPLI------D 497 (1132)
Q Consensus 446 ~~l~~l~~~l~-----------------~f~~~~~~~~ylVDsLwd---~~~~lkDW--e~m~~lLL~D~~~~------~ 497 (1132)
.-..+++..+. .|....+...-.+.|+-. ......-| +-+..++|.|++.. .
T Consensus 458 ~iFsr~~~llk~v~ls~easvy~~t~iR~f~~ng~f~~pii~s~l~~~~i~si~~te~~Ediakl~l~dnsD~eDvn~~e 537 (740)
T COG5537 458 EIFSRFVHLLKKVELSFEASVYRITEIRRFFSNGEFTCPIIKSFLISEGIGSIHPTEVKEDIAKLRLMDNSDYEDVNGYE 537 (740)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCceechhHHHHHHHhhcccccchhHHHHHHHHHhhccCccccccccc
Confidence 11222322222 221111111122233222 22345889 88888999887531 1
Q ss_pred CCch----h-hHHHHHHHHHHHHHHhccCCCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHh----cCcc
Q 001174 498 LNDD----D-ATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFM----ADKA 568 (1132)
Q Consensus 498 L~d~----~-e~~LieiL~asVrqa~ge~~~~~~~~rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~----aD~e 568 (1132)
|.+. . .+.++=.=.++.--|. .+| .+ .+..+..+.-.+|.--||.|+.+|. .+|-
T Consensus 538 l~~t~np~~~~s~il~~~~~~~~~a~--------~n~-------p~-~r~~D~ve~~~~m~~~L~ali~s~~e~c~~~~~ 601 (740)
T COG5537 538 LKDTANPAVLCSFILFFREKCIEFAV--------LNR-------PV-ERASDQVECFKVMYDRLSALIHSEAERCFVDPK 601 (740)
T ss_pred cccccchHhhhhhHHHHHHHHHHHHh--------hCC-------ch-hhhhhhHHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 2111 0 0111111111111111 011 01 1123444677788888999999886 4667
Q ss_pred chhHHHhhhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Q 001174 569 KVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCS 625 (1132)
Q Consensus 569 kv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al~~L~ 625 (1132)
-+..++++|--.=..-|. .+-|+.+.+++-++|...++...---|.. +.|++
T Consensus 602 fi~~~~~~~de~ly~~e~----~kif~k~~ke~~difnS~~~~~~~i~~~~-f~h~~ 653 (740)
T COG5537 602 FIISLFKLVDEGLYTDES----NKIFKKCGKELIDIFNSRSKSRMNIVSGY-FRHLM 653 (740)
T ss_pred HHHHHHhhhHhhchhhHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHH
Confidence 777777777654333222 24567777777778888877665544443 33443
No 3
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=99.96 E-value=2.6e-29 Score=245.76 Aligned_cols=113 Identities=40% Similarity=0.659 Sum_probs=104.8
Q ss_pred cccc-ccccccchhHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 001174 151 EDYQ-SSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKM 229 (1132)
Q Consensus 151 ~dy~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~ 229 (1132)
++|| ++++|.||+||.||++||+.||..|+.++|||++||+++++||++||+|++||||||||++||+|+|+||+|+.+
T Consensus 4 ~~YPli~k~~~~k~Fr~~~~~F~~~lv~~~~~~~Lyd~~l~~~l~~wl~~lS~S~~R~fRhTaT~~~l~i~t~L~~v~~~ 83 (118)
T PF08514_consen 4 SDYPLISKGKKFKKFRKNFCEFFDQLVEQCHSSILYDDYLMDNLISWLTALSSSKVRPFRHTATLAALKIMTSLCDVAKS 83 (118)
T ss_pred ccCCCcCCCcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHHHHH
Confidence 4565 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHcccC-CCccHHHHHHHHHH
Q 001174 230 LGAQRETTQRQLNAEKKKRV-EGPRVESLNKRLSM 263 (1132)
Q Consensus 230 l~~~~~~~qRQleaEk~K~~-~~~r~e~l~~~~~e 263 (1132)
+..+++++||||++|++|++ ++.|+++|+++++|
T Consensus 84 l~~~~~~~~rQl~aE~~k~~~~~~r~~~l~~~i~~ 118 (118)
T PF08514_consen 84 LSEELEKTQRQLEAEKKKKRKNKSRLEELEQKIKE 118 (118)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcC
Confidence 99999999999999988765 44688888887653
No 4
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.07 E-value=0.0026 Score=67.19 Aligned_cols=93 Identities=29% Similarity=0.454 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD 370 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~ 370 (1132)
+|.||.-++..||.....||... +.|+.++.=.|+|+++.||..|+..|..|..+. .+.-=+.+.. +++....
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~k~~l~~----~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKVKGQLFS----RILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceeehhhhhH----HHHHHHc
Confidence 58999999999999999999765 679999999999999999999999999999753 2211122222 4455558
Q ss_pred cCchhHHHHHHHHHHHHHhc
Q 001174 371 DIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 371 D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
|.|++|+..|..++..+.+.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998887
No 5
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.0095 Score=76.49 Aligned_cols=308 Identities=18% Similarity=0.114 Sum_probs=174.0
Q ss_pred HHHHHHHHhhccCCCCcccccCcccCCHHHHHHHHHHhhHhcccCCCCchhhhhHHHHHHhhc--HHHHHHHHHHHhhCC
Q 001174 777 ILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNR--DAVMIAAAKLIAIDS 854 (1132)
Q Consensus 777 ~l~Dl~~lF~~~~~~~~~l~~L~y~p~~~~~~~l~~~~~~~~~~~d~~~d~~~~~e~ie~~~R--R~~La~~cKLi~~~v 854 (1132)
++..+++.|.........+.- .+.|....+.+|+..+...+...++.-.+ .+.+..|+..+ -.+| .|.++--..
T Consensus 726 ~l~~~~~~~~~~~~~~~~i~~-~~~~~~e~l~~f~~~~~~~~~l~~~~~~~-~~~ev~e~~~~~~~~~L--ii~~~~~~~ 801 (1048)
T KOG2011|consen 726 ILFKLQLLGNKLTYDLVKIKN-GEVCGAEFLSELRSRSDSMFNLVDEYLEE-VNMEVEEQAVRLGCDRL--IIFKVQDME 801 (1048)
T ss_pred HHHHHHHhhhhhhhhhhhhcc-CCCccHHHHHHHHHHhHHHHHHHHHHHHh-hhhHHHHHHHHHHhhHH--HHhhhhhcc
Confidence 344445555443333333333 88999999999988887666555432222 12334444322 2222 334444444
Q ss_pred CCCccccccccccccccCCChHHHHHHHHHHHhhc-c-hhHHHHHHHHHHHH----HHHHHHHhcc-CCCCccchhhhHh
Q 001174 855 VPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKK-D-EDVSTIFLEALKRA----YQRHAVEISR-SDDKSLTEKSFVE 927 (1132)
Q Consensus 855 vp~~~~Aa~I~khY~k~y~d~gDIIK~tl~k~r~~-~-~~~a~~l~~sL~~l----y~~~~~~~~~-~~~~~~~s~~f~~ 927 (1132)
.+....++.||++=.....-.+-++.......+.. + .++-.+-..+.+.. |.+...++.. -...+..-..+..
T Consensus 802 ~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~~~~~~~Ie~~~~~r~~~a~~~~li~~~~~~~~~a~~~fK~~~~ 881 (1048)
T KOG2011|consen 802 GKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSENTNECLKIEQLHKKRKLLASLAKLILENKLPMMEASDIFKMYEK 881 (1048)
T ss_pred cchhccccceechHHHHHHhhhhHHHHHhhhhhcccchHHHHHHHHHHHhhhHHhHHHHHHHcccccHHHHHHHHHHHHH
Confidence 45555678888766554444444444433333332 1 11111111111111 1111111000 0000001122222
Q ss_pred HHHHHHHh-hcccCCcccccchHHHHHHHHhhccccccccccccchHHhhHhhhccCCCcccHHHHHHHHHhhccCCCCC
Q 001174 928 CKELSSRL-SGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMD 1006 (1132)
Q Consensus 928 ikeLArRf-altf~G~d~~K~R~ai~~lHk~GI~FAf~~~P~nL~FLei~L~eFs~KLl~qDk~~v~~yl~~~~~~~~~~ 1006 (1132)
...+..=. ..|+ |.-....+--.++-...+..++|...|..|++..+++-.|--..-+-+...+++--..+.-... +
T Consensus 882 ~~~~~gd~~~~~l-~k~r~i~~~~~~~~l~~~l~~~~~~~~~~la~r~~~~~~~~~~~~r~ai~~~~k~~~~~~~~~~-~ 959 (1048)
T KOG2011|consen 882 FYNDYGDIIKETL-SKAREIDKSEFAKTVDLSLETLFDTEIKELAKRLALTFGLDQLKNRFAIAVLHKKGILFALFKK-D 959 (1048)
T ss_pred HHHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCHHHHhhHHHHHHHHhhcccceeecC-C
Confidence 22222222 3455 7777788888888888888888887788888888753333333334445555555444443334 5
Q ss_pred CCCCCcccHHHHHHHHhhhhcCCCCchhhhhcccccccCCCCCccccccccccccCCCCccccccccccccccccccccc
Q 001174 1007 EDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRLFDEHSSSEEEDSISASDQEVAQDEDDKQ 1086 (1132)
Q Consensus 1007 ~~~~~W~Pl~~Yr~sL~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1132)
.++..|.|=..|.+-|.+++.+ .|+++...++..+++|++++-.. +..+...+..+.-+++|+.+..
T Consensus 960 ~~~~~~~p~~~fleil~e~s~k---~Qdkk~~~~~~~k~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~--------- 1026 (1048)
T KOG2011|consen 960 DDPSMEPPNLAFLEILSEFSNK---TQDKKAVLSYLEKIETDHMPTSR-DPWIPLTSYLNSLEEGSQDDSM--------- 1026 (1048)
T ss_pred CCccCCCCCchHHHHHHHhcch---hhhhhhHhhHHHhhccccCCCCC-CCCcccccccccccccCCCCcc---------
Confidence 7889999999999999998888 88888888888999999988877 9999988887443333333222
Q ss_pred hhhhccccchhhhccchh
Q 001174 1087 EEEEEDEAPLIHSIRSSA 1104 (1132)
Q Consensus 1087 ~~~~~~~~~~~~~~~~~~ 1104 (1132)
...-+ ..|.+.+||+++
T Consensus 1027 ~~~~~-~~~~~~~~~~~~ 1043 (1048)
T KOG2011|consen 1027 SAPSG-HSTVVDTIRSAA 1043 (1048)
T ss_pred ccccC-Ccchhhhhcccc
Confidence 22233 889999999553
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.35 E-value=0.2 Score=61.02 Aligned_cols=298 Identities=18% Similarity=0.206 Sum_probs=167.7
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM 368 (1132)
|-.|.+|...+..+..-...+|+.+-.. ++..+..+|.|+++.|+..++..|..+ +.++.. ...+...+-.+|..+
T Consensus 125 ~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~--~~~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 125 DPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS--YKSLIPKLIRILCQL 200 (526)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH--HTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch--hhhhHHHHHHHhhhc
Confidence 6789999999999999999999988666 999999999999999999999999999 322111 115566666778888
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCC---CChhhHHhhhcCCChHHHHHHHHHHHHHHHHhhhcCcccCCCCCCCCchh
Q 001174 369 ADDIDVSVAVCAIGLVKQLLRHQLLPD---DDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSE 445 (1132)
Q Consensus 369 ~~D~D~~Vav~AI~Ll~~l~~~~~L~~---ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~~~~~~~~~ 445 (1132)
..+.++-+.+.+++++..+.....-.+ .-+..+..++.+.++.|.-+|..++.. +.. . .
T Consensus 201 l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~--l~~----~------------~ 262 (526)
T PF01602_consen 201 LSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK--LSP----S------------P 262 (526)
T ss_dssp HTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSS----S------------H
T ss_pred ccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH--hhc----c------------h
Confidence 788898999999998876655432222 123466666778888888888887663 110 0 0
Q ss_pred hHHhHHHHHHHhhcCCCch-hhH-HHHhhcc---cc-ccCCChHHHHHHHcCCCCCCCCCchhhHHHHHHHHHHHHHHhc
Q 001174 446 VHLGRMLQILREFSADPIL-SIY-VIDDVWE---YM-KAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVG 519 (1132)
Q Consensus 446 ~~l~~l~~~l~~f~~~~~~-~~y-lVDsLwd---~~-~~lkDWe~m~~lLL~D~~~~~L~d~~e~~LieiL~asVrqa~g 519 (1132)
.-+...+..|..|-..+.. ..| .+++|-. .. +.+........+|..+.. ..=...-+++|...+...--
T Consensus 263 ~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d-----~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 263 ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDD-----PSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSS-----HHHHHHHHHHHHHH--HHHH
T ss_pred HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCC-----hhHHHHHHHHHhhcccccch
Confidence 0123333444443333222 233 3455443 22 445677777888874431 11122334444443332210
Q ss_pred cCCCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHhcCccchh----HHHhhh-hhcchhhhhcc-----c
Q 001174 520 ERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVP----SLIDIV-MHMKLELYSLK-----R 589 (1132)
Q Consensus 520 e~~~~~~~~rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~aD~ekv~----~LL~ip-~~~dLe~Y~~~-----r 589 (1132)
..+.+ .-.+-.....-.++...++..|-.+-.||..+++... .++... .+..-++.... +
T Consensus 338 ~~Il~----------eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 338 KEILD----------ELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp HHHHH----------HHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred hhHHH----------HHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence 00000 0000010111234666677777778888866654332 222221 11111111110 1
Q ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc
Q 001174 590 DEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAE 627 (1132)
Q Consensus 590 ~e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al~~L~~~ 627 (1132)
.....+..+..+.+.+..-.+++++..++ |+++|
T Consensus 408 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~----wilGE 441 (526)
T PF01602_consen 408 NPELREKILKKLIELLEDISSPEALAAAI----WILGE 441 (526)
T ss_dssp STTTHHHHHHHHHHHHTSSSSHHHHHHHH----HHHHH
T ss_pred ChhhhHHHHHHHHHHHHHhhHHHHHHHHH----hhhcc
Confidence 11223445566666666666777655543 55554
No 7
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=96.19 E-value=0.0069 Score=72.86 Aligned_cols=128 Identities=26% Similarity=0.462 Sum_probs=83.8
Q ss_pred HHHHHhhcceEeccccCC--ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHH--HHHHHHHHhhhhcC
Q 001174 273 DMMRKIFTGLFVHRYRDI--DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVR--KSSVLALQNLYEVD 348 (1132)
Q Consensus 273 ~~l~~iF~~VFvhRyRDv--~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR--~~~L~aL~~Ly~~~ 348 (1132)
++...+++..|-.|.||+ +-.||..|++-...|-..- ..|=+.-||.|+||.+++++..+| --.......++-.
T Consensus 162 e~~lyly~eNfK~~~rd~~~~F~~~~llveFvs~~~v~~-~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~- 239 (740)
T COG5537 162 EVVLYLYDENFKVRFRDVYQDFNIRALLVEFVSEWVVSV-GIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQK- 239 (740)
T ss_pred eeeeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-eeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHH-
Confidence 345567777888888888 5689999999999998776 444456789999999999999998 1111111122110
Q ss_pred CCcccHHHH-HHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc-----CCChHHHHHHHHHHH
Q 001174 349 DNVPTLGLF-TERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI-----DDPPEIRRAIGELVY 421 (1132)
Q Consensus 349 ~~~~~L~lF-t~RFk~RlVeM~-~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvf-----d~~~~Vr~AAg~fv~ 421 (1132)
. --...| .+++|.|+.+.+ .|-.++. ++ +.++.++..+| |-.+.||..+..-++
T Consensus 240 -~-Lc~qa~~lsEKksR~ne~~l~~ln~sl-------~~----------d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~ 300 (740)
T COG5537 240 -K-LCVQAFSLSEKKSRMNELALYDLNPSL-------IR----------DEIKDICDSVFVSRYIDVDDVIRVLCSMSLR 300 (740)
T ss_pred -H-HHHHHHHHHHHhhhHHHHHHHhhcchH-------HH----------HHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 0 022345 788999999999 5666665 11 11233444444 667777777765443
No 8
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.02 E-value=0.17 Score=53.57 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCCh--hhHHhhhcC
Q 001174 330 SASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDL--GPLYDLLID 407 (1132)
Q Consensus 330 ~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~--~~V~~Lvfd 407 (1132)
++.||..++-+|..|.-. -..+.+++-+.|..+-.|.++.||..|+.+++.|...|++..++. ..+..++-|
T Consensus 1 ~~~vR~n~i~~l~DL~~r------~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR------YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHh------CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC
Confidence 578999999999988642 224556677788888899999999999999999999998877654 577788899
Q ss_pred CChHHHHHHHHHHHHH
Q 001174 408 DPPEIRRAIGELVYDH 423 (1132)
Q Consensus 408 ~~~~Vr~AAg~fv~~~ 423 (1132)
+++.||..|..|+.+-
T Consensus 75 ~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 75 ENPEIRSLARSFFSEL 90 (178)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998763
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=3 Score=51.75 Aligned_cols=101 Identities=29% Similarity=0.365 Sum_probs=85.1
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccc--cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc--CCCcccHHHHHHHHH
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFL--QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV--DDNVPTLGLFTERFS 362 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL--~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~--~~~~~~L~lFt~RFk 362 (1132)
|+--.|.||+..|..+...|..-++.|. =|+||--+.-.=+|.+++||..+-++|.-|.+. +.+.+.|+.-.+
T Consensus 183 ~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Ive--- 259 (885)
T KOG2023|consen 183 FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVE--- 259 (885)
T ss_pred HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHH---
Confidence 4445999999999999999988888665 489999999999999999999999999999865 345566776665
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
=|+..+.|.|.+|+.+|......+-+..
T Consensus 260 -yML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 260 -YMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred -HHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 4666778999999999999998888765
No 10
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.31 E-value=0.44 Score=51.72 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=78.4
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC-CcccH--HHHH
Q 001174 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD-NVPTL--GLFT 358 (1132)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L--~lFt 358 (1132)
..+.|.-|.-.-||..+...|-.++..+| +...-.+.++.-.+.+|++.||..|+.-|..+...-. ..+.+ ..++
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 45577788888999999999999999888 3333347889999999999999999999999876432 22333 3356
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 359 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 359 ~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
..+.+-|+.+..|.+++||..|-+++..+.++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 77888888888999999999999999999876
No 11
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.89 E-value=0.13 Score=46.94 Aligned_cols=77 Identities=26% Similarity=0.258 Sum_probs=61.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.|-+|.+|..++..|| .+-++.-+.+|-.+|.|+++.||..++.+|..+- +.+-.+.|++
T Consensus 10 ~~~~~~vr~~a~~~L~--------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~ 69 (88)
T PF13646_consen 10 NDPDPQVRAEAARALG--------ELGDPEAIPALIELLKDEDPMVRRAAARALGRIG------------DPEAIPALIK 69 (88)
T ss_dssp TSSSHHHHHHHHHHHH--------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHH
Confidence 6889999999999999 2234467899999999999999999999999872 3445667788
Q ss_pred hc-ccCchhHHHHHHHHH
Q 001174 368 LA-DDIDVSVAVCAIGLV 384 (1132)
Q Consensus 368 M~-~D~D~~Vav~AI~Ll 384 (1132)
|. .|.+..|+..|+.-|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 88 567777898888755
No 12
>PRK09687 putative lyase; Provisional
Probab=94.46 E-value=0.15 Score=57.91 Aligned_cols=118 Identities=20% Similarity=0.116 Sum_probs=83.3
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
..|-+|.+|..++..||.- ....... ....+.-+.-+++|+++.||..++.+|..+ ++++ =-+-|+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~-~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-~~~~-----------ai~~L~ 165 (280)
T PRK09687 100 LEDKSACVRASAINATGHR-CKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVI-NDEA-----------AIPLLI 165 (280)
T ss_pred hcCCCHHHHHHHHHHHhcc-ccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhcc-CCHH-----------HHHHHH
Confidence 4789999999999999952 1111001 223344566678999999999999999655 2222 224567
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
.+..|.|+.|+..|+.-|..+ +.=++.=.+.+..++-|.+..||.+|+..+-
T Consensus 166 ~~L~d~~~~VR~~A~~aLg~~---~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 166 NLLKDPNGDVRNWAAFALNSN---KYDNPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 777899999999999888877 2113444567788888999999999987764
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.85 E-value=0.19 Score=65.95 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=86.4
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
...-.|-+|+||......||.==...+ .-+..|.-+|.|.++.||..++.+|..+...+... .
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~-----------~ 810 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDV-----------A 810 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhH-----------H
Confidence 456889999999999999983211111 12455667789999999999999999886432211 3
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
.++.+..|.|+.||..|++.|..+- +++-...+..++-|+++.||++|+.-|-.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~-----~~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA-----ADVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc-----ccchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4666678899999999999886542 33445788888889999999999987644
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.78 E-value=0.31 Score=63.90 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=9.9
Q ss_pred hcCCCChhHHHHHHHHHHhh
Q 001174 325 TLNDKSASVRKSSVLALQNL 344 (1132)
Q Consensus 325 ~L~Dk~~~VR~~~L~aL~~L 344 (1132)
.|.|+++.||..++++|..+
T Consensus 629 ~L~D~d~~VR~~Av~~L~~~ 648 (897)
T PRK13800 629 YLADPDPGVRRTAVAVLTET 648 (897)
T ss_pred HhcCCCHHHHHHHHHHHhhh
Confidence 34455555555555555443
No 15
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.71 E-value=0.23 Score=65.59 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=108.1
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhH--HHHHHHHHHhhhh-------c--CC-
Q 001174 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASV--RKSSVLALQNLYE-------V--DD- 349 (1132)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~V--R~~~L~aL~~Ly~-------~--~~- 349 (1132)
.|..|+.| -+||.--+..||.....+|.+|....-++-+--.|+|.+..+ +..|++.+.-..- + .+
T Consensus 1231 ~~f~k~~~--~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w 1308 (1692)
T KOG1020|consen 1231 MYFSKDKD--GELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNW 1308 (1692)
T ss_pred HHHHHhhh--hHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 35667777 899999999999999999999999999999999999976665 5666666554320 0 00
Q ss_pred --------------C------cccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhh-HHhhhcCC
Q 001174 350 --------------N------VPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGP-LYDLLIDD 408 (1132)
Q Consensus 350 --------------~------~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~-V~~Lvfd~ 408 (1132)
. .+...--.++|-+.|++-|.|.|..|+..||+++..+++.|+..|-.|-+ +..|--|.
T Consensus 1309 ~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp 1388 (1692)
T KOG1020|consen 1309 TKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDP 1388 (1692)
T ss_pred hhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCCh
Confidence 0 01123367799999999999999999999999999999999999987753 34444477
Q ss_pred ChHHHHHHHHHHHH
Q 001174 409 PPEIRRAIGELVYD 422 (1132)
Q Consensus 409 ~~~Vr~AAg~fv~~ 422 (1132)
...+|+-|-.++.+
T Consensus 1389 ~~~~r~~Ad~LL~e 1402 (1692)
T KOG1020|consen 1389 SQAIRHVADELLKE 1402 (1692)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888777543
No 16
>PRK09687 putative lyase; Provisional
Probab=93.68 E-value=0.32 Score=55.29 Aligned_cols=119 Identities=19% Similarity=0.125 Sum_probs=71.8
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
|-+|.+|...+..||. |..-+.. .+..+..|. +.++|+++.||..++.+|-.+.... ... ..++..-+..
T Consensus 65 ~~d~~vR~~A~~aLg~-lg~~~~~--~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~-----~~~a~~~l~~ 135 (280)
T PRK09687 65 SKNPIERDIGADILSQ-LGMAKRC--QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLY-----SPKIVEQSQI 135 (280)
T ss_pred CCCHHHHHHHHHHHHh-cCCCccc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-ccc-----chHHHHHHHH
Confidence 5677888888877775 2111110 233455555 4578888888888888877764221 111 2234444556
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
+..|.|..||..|+.-|..+- +++-++.+..++-|.++.||.+|+.-+-
T Consensus 136 ~~~D~~~~VR~~a~~aLg~~~-----~~~ai~~L~~~L~d~~~~VR~~A~~aLg 184 (280)
T PRK09687 136 TAFDKSTNVRFAVAFALSVIN-----DEAAIPLLINLLKDPNGDVRNWAAFALN 184 (280)
T ss_pred HhhCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 667778888887777664321 2334556677777777788877776654
No 17
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=0.36 Score=62.66 Aligned_cols=163 Identities=24% Similarity=0.375 Sum_probs=119.7
Q ss_pred hhccCCccc-hHhHHHHHHHhHhcCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCc
Q 001174 178 ECQNGPLFD-KVLFDKCMDYIIALSCTPPR----VYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGP 252 (1132)
Q Consensus 178 ~~~~~~LyD-~~Lmd~l~~wL~~LS~S~vR----~fRHTATlaaL~l~taLv~va~~l~~~~~~~qRQleaEk~K~~~~~ 252 (1132)
.|..-.||. ..+|..+..++.-.+..+.+ -++|+||++--++|.- +..
T Consensus 904 icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i--------Sa~------------------- 956 (1251)
T KOG0414|consen 904 ICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI--------SAE------------------- 956 (1251)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh--------hHH-------------------
Confidence 355567776 67999999999877754444 3899999998888731 110
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChh
Q 001174 253 RVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSAS 332 (1132)
Q Consensus 253 r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~ 332 (1132)
=++.+...+-.+|+. =-.|-||+-|+-+||.....||..+ +.+--||.-.|.|.++.
T Consensus 957 ----------fces~l~llftimek-----------sp~p~IRsN~VvalgDlav~fpnli--e~~T~~Ly~rL~D~~~~ 1013 (1251)
T KOG0414|consen 957 ----------FCESHLPLLFTIMEK-----------SPSPRIRSNLVVALGDLAVRFPNLI--EPWTEHLYRRLRDESPS 1013 (1251)
T ss_pred ----------HHHHHHHHHHHHHhc-----------CCCceeeecchheccchhhhccccc--chhhHHHHHHhcCccHH
Confidence 001111222222221 1368899999999999999999876 45778999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc---ccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc
Q 001174 333 VRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA---DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI 406 (1132)
Q Consensus 333 VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~---~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvf 406 (1132)
||..|+..|..|.-++ .+ |-|..+-+|| .|-+.+++-.|=.....|...| +.||.|+.
T Consensus 1014 vRkta~lvlshLILnd-mi--------KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-------n~iynlLP 1074 (1251)
T KOG0414|consen 1014 VRKTALLVLSHLILND-MI--------KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-------NTIYNLLP 1074 (1251)
T ss_pred HHHHHHHHHHHHHHhh-hh--------HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-------cchhhhch
Confidence 9999999999998653 21 3677888998 4999999999998888888876 25565554
No 18
>PTZ00429 beta-adaptin; Provisional
Probab=92.88 E-value=0.23 Score=63.45 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=75.9
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHH
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFS 362 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk 362 (1132)
.+-..|-+|-||+..+..||.- ..|+ +-+.-+..+.-.|.|+++-||.+|+-++.+||.. ++... -.+|.
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~I--r~~~--i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-----~~~~~ 181 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCI--RVSS--VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-----QQDFK 181 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcC--CcHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-----ccchH
Confidence 3445688999999999999952 1222 1223346668889999999999999999999974 33221 12366
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
++|.+|..|.|+.|...|+.++..|.+.+
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 78888889999999999999999998764
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.22 E-value=0.53 Score=44.71 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHHHhh---CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHHHH
Q 001174 290 IDPNIRMSCIQSLGVWILS---YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSNRM 365 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~---yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt-~RFk~Rl 365 (1132)
-++++|..++..|+.-... +...|++...+.++--.|+|+++.||..++.+|..|-.+.. .....+. .-+-+.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~l~~l 96 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIVLEAGGVPKL 96 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHHHHCCChHHH
Confidence 3489999999999986643 45678888999999999999999999999999999976542 2222222 2367788
Q ss_pred hhhcccCchhHHHHHHHHHHHHH
Q 001174 366 IELADDIDVSVAVCAIGLVKQLL 388 (1132)
Q Consensus 366 VeM~~D~D~~Vav~AI~Ll~~l~ 388 (1132)
++...+.|..|+..|+.++..|.
T Consensus 97 ~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 97 VNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888889999999999988764
No 20
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.64 E-value=0.47 Score=50.76 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChh-hHHhhhcCCChHHHHHHHHHHH
Q 001174 357 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLG-PLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 357 Ft~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~-~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
-.+||-++|+++|.+.|..||..|++++..+.+.|+..|.+|- .+..|.-|.++.||+.|-..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~ 70 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLK 70 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999885 5667888999999999987653
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.69 E-value=0.49 Score=43.15 Aligned_cols=77 Identities=30% Similarity=0.317 Sum_probs=58.5
Q ss_pred hc-CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHh
Q 001174 325 TL-NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYD 403 (1132)
Q Consensus 325 ~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~ 403 (1132)
.| +|+++.||..++..|..+-. .+.-+.|++++.|.|+.|+..|+.-|..|- +++-++.+.+
T Consensus 7 ~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----~~~~~~~L~~ 69 (88)
T PF13646_consen 7 LLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIG-----DPEAIPALIK 69 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----HHHTHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----CHHHHHHHHH
Confidence 34 89999999999999995532 145778888999999999999999888663 3445667777
Q ss_pred hhcCC-ChHHHHHHHH
Q 001174 404 LLIDD-PPEIRRAIGE 418 (1132)
Q Consensus 404 Lvfd~-~~~Vr~AAg~ 418 (1132)
++.++ +..||.+|..
T Consensus 70 ~l~~~~~~~vr~~a~~ 85 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAE 85 (88)
T ss_dssp HHTC-SSHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHh
Confidence 77764 5566777764
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.63 E-value=1.2 Score=42.18 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=78.2
Q ss_pred cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH-HHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 313 FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE-RFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 313 FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~-RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
|.+...+.++--.|.|.+..+|..++.+|..+....+ .....|.+ .+-+.++.+..|.|+.|+..|+..+..|...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4455677888888999999999999999999987521 22233333 67788888888899999999999999998764
Q ss_pred ------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 392 ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 392 ------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
+....-+..+.+++-+.+..++..|..++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 112223445566666677777777776654
No 23
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=8.4 Score=48.44 Aligned_cols=94 Identities=22% Similarity=0.353 Sum_probs=64.7
Q ss_pred HHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC
Q 001174 270 DLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD 349 (1132)
Q Consensus 270 ~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~ 349 (1132)
-+-+-+|.+..+-...=--|-...| .+|++-|+..|.. +|+.|||||- .++.++.+..
T Consensus 273 LlYECvNTVVa~s~s~g~~d~~asi-qLCvqKLr~fied------sDqNLKYlgL--------------lam~KI~ktH- 330 (877)
T KOG1059|consen 273 LLYECVNTVVAVSMSSGMSDHSASI-QLCVQKLRIFIED------SDQNLKYLGL--------------LAMSKILKTH- 330 (877)
T ss_pred HHHHHHHHheeehhccCCCCcHHHH-HHHHHHHhhhhhc------CCccHHHHHH--------------HHHHHHhhhC-
Confidence 3444455555442223334556666 5799999965543 5789999994 4555554321
Q ss_pred CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 350 NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 350 ~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
--|.+++|+=|+....|+|.++|..|+.||..|...
T Consensus 331 -----p~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 331 -----PKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred -----HHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 147888998888877999999999999999887764
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.30 E-value=1.3 Score=48.12 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=46.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---ccccc----chhhhhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYP---SFFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQNLYEV 347 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 347 (1132)
.+=.|.+|..|++.|..++..+| ..+-. +.+.+.+.-+|+|.+++||..+-+.+..+|+.
T Consensus 141 ~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 141 KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999 33333 45889999999999999999999999999853
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.93 E-value=2.5 Score=52.13 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=80.1
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHHHHhhhc
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSNRMIELA 369 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt-~RFk~RlVeM~ 369 (1132)
.++.=..|+.-|+.++...+-..+.+.|..+|--.|.-+++.||.-|+++|.++-.+.+. ....+. .-.-+.++...
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~--~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG--AAQLLVDNELLPLIIQCL 128 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--HHHHhcCccHHHHHHHHH
Confidence 556667888999999999988888999999999999999999999999999998765432 222221 12344677777
Q ss_pred ccCchhHHHHHHHHHHHHHhc
Q 001174 370 DDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 370 ~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
.|.|.+|+..|+++|..|.++
T Consensus 129 ~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 129 RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred cCCcHHHHHHHHHHHHHHhCC
Confidence 899999999999999999986
No 26
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.55 E-value=3.5 Score=47.18 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=92.6
Q ss_pred hhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhh---hcCCCcccH
Q 001174 278 IFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLY---EVDDNVPTL 354 (1132)
Q Consensus 278 iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly---~~~~~~~~L 354 (1132)
+++++.+.=.+=.+|.||...++.||......+..- ..|+..|.-.+......||..|+++|-.+. +.+-+...-
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 333444444555788999999999998887777443 447788888886669999999999998885 322111111
Q ss_pred ----HHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCC-CCh-hhHHhhhcC----CChHHHHHHHHHH
Q 001174 355 ----GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPD-DDL-GPLYDLLID----DPPEIRRAIGELV 420 (1132)
Q Consensus 355 ----~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~-ed~-~~V~~Lvfd----~~~~Vr~AAg~fv 420 (1132)
......+-+-+.....+.+.+|+..|+.-+..|+=+|.+.+ .++ ..+.-+.|+ ++.++|+.-+-|+
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 12333344444555545588899999999999998998887 332 344444442 3456666666664
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=87.40 E-value=2.9 Score=47.13 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=74.4
Q ss_pred CChhHHHHHHHHHHHHHhhCccc---cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 290 IDPNIRMSCIQSLGVWILSYPSF---FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~~---FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
-||.|+..++-.||. ...||.. .-+-.=+.-+|-+|+|+++.||..++.+|..+-.+.++...++.+...-...++
T Consensus 25 ~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 25 EDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 479999999999998 5666642 334567889999999999999999999999998777777777776554333333
Q ss_pred hhcccCchhHHHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLL 388 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~ 388 (1132)
+ ...|..|...++++|+.|.
T Consensus 104 s--~~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 104 S--SPLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred c--CCCCCHHHHHHHHHHHccC
Confidence 3 3567888899999888874
No 28
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.64 E-value=14 Score=45.56 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhh-ccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHH------H
Q 001174 166 DNLVSFWDNLVVEC-QNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETT------Q 238 (1132)
Q Consensus 166 ~n~~eF~~~Lv~~~-~~~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~l~~~~~~~------q 238 (1132)
..+..|+.+++.-- +..+ -...+.+.++-.+.--.+|+-...|.-+ ++|..-++++...+...+-|. .
T Consensus 65 dRil~fl~~f~~Y~~~~dp-eg~~~V~~~~~h~lRg~eskdk~VR~r~----lqila~~~d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 65 DRILSFLKRFFEYDMPDDP-EGEELVAGTFYHLLRGTESKDKKVRKRS----LQILALLSDVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred HHHHHHHHHHHHhcCCCCh-hhhHHHHHHHHHHHhcccCcchhHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34566666666521 1111 0024666666777777788888777654 667777777777777666552 3
Q ss_pred HHHHHHHcccCCCccHHHHH--HHHHHHHh-hHHHHHHH------------------HHHhh----cceEeccccCCChh
Q 001174 239 RQLNAEKKKRVEGPRVESLN--KRLSMTHK-NITDLEDM------------------MRKIF----TGLFVHRYRDIDPN 293 (1132)
Q Consensus 239 RQleaEk~K~~~~~r~e~l~--~~~~e~~~-~~~~i~~~------------------l~~iF----~~VFvhRyRDv~p~ 293 (1132)
|-++.|+. -|.+++. .+.++.+. ....+.++ +|-.. -+..+.|-|||+.-
T Consensus 140 R~~DRE~~-----VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~a 214 (885)
T COG5218 140 RLFDREKA-----VRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGA 214 (885)
T ss_pred HHhcchHH-----HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHH
Confidence 44444432 2344331 11112111 11112222 22222 25678999999999
Q ss_pred HHHHHH----HHHHHHHhhCccccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001174 294 IRMSCI----QSLGVWILSYPSFFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1132)
Q Consensus 294 IR~~Ci----~eLG~Wi~~yP~~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM 368 (1132)
+|...- -.+|.. .|+ .+.....+-|.|.|..-+||.+|..+|..-|.++.-. |+|++
T Consensus 215 nRr~vY~r~Lp~iGd~------~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~------------~lveL 276 (885)
T COG5218 215 NRRMVYERCLPRIGDL------KSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDL------------RLVEL 276 (885)
T ss_pred HHHHHHHHHhhhhcch------hhccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccc------------cHHHH
Confidence 998744 444421 344 3556668999999999999999999999999876443 45554
Q ss_pred c--ccC-chhHHHHHHH
Q 001174 369 A--DDI-DVSVAVCAIG 382 (1132)
Q Consensus 369 ~--~D~-D~~Vav~AI~ 382 (1132)
. +|+ ...|.|.||+
T Consensus 277 le~lDvSr~sv~v~aik 293 (885)
T COG5218 277 LEFLDVSRRSVLVAAIK 293 (885)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 4 343 2347888877
No 29
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.47 E-value=19 Score=45.40 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=90.1
Q ss_pred HhhcceEeccccCCChhHHHHHHHHHHHHHhhCcccccc----chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc
Q 001174 277 KIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP 352 (1132)
Q Consensus 277 ~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~ 352 (1132)
...+.+.+---|-..|+ | .++-+..++..+|+.=.. +..++|+--.+--|+..||..|++.|..|-.+. ..
T Consensus 44 r~vn~il~vkKresi~d-R--Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~--~e 118 (892)
T KOG2025|consen 44 RVVNYILLVKKRESIPD-R--ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN--AE 118 (892)
T ss_pred HHHHHheeeccCCCcHH-H--HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc--cc
Confidence 33343444445555554 2 345566666666665444 345677777888899999999999999998632 11
Q ss_pred cHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhh----cCCChHHHHHHH
Q 001174 353 TLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLL----IDDPPEIRRAIG 417 (1132)
Q Consensus 353 ~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lv----fd~~~~Vr~AAg 417 (1132)
-=+...+.....|.+-..|.++.||.+|+-.|+.+.... -+++|.-+--++ .|.++.||+||-
T Consensus 119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~--~dee~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP--KDEECPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCCcHHHHHHHH
Confidence 112344556677777778999999999999999887643 344554332222 299999999986
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=85.21 E-value=74 Score=45.58 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=95.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhC---ccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSY---PSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~y---P~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
+.-+++||..++..||.-...- .....+..-+..|-+.|.+.+..++..++.+|..|-...+. ..+ +.
T Consensus 498 ~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I--------~~ 568 (2102)
T PLN03200 498 ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATI--------SQ 568 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHH--------HH
Confidence 3446899999888888654422 22344668899999999999999999999999999755432 122 56
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhc---------CCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRH---------QLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~---------~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+++|-...|..+...+++.+..|+.. +..+..-++.+.+|+-+.++.+++.|+..+..
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsn 635 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLAD 635 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888667778888899988777653 23345667899999999999999999976543
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=84.31 E-value=25 Score=42.90 Aligned_cols=96 Identities=18% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
--.|+++..|+--||.+....+. . .-..+++++.+.+.+.++.||...+.++.++|....... . .....+.+..
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~-~---~~~i~~~~~~ 500 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENE-V---QNEILQFLLS 500 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTT-H---HHHHHHHHHC
T ss_pred hhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchh-h---HHHHHHHHHH
Confidence 56788999999999988777765 4 445789999999999999999999999999996542111 1 1134455666
Q ss_pred hcc--cCchhHHHHHHHHHHHHHh
Q 001174 368 LAD--DIDVSVAVCAIGLVKQLLR 389 (1132)
Q Consensus 368 M~~--D~D~~Vav~AI~Ll~~l~~ 389 (1132)
++. |.|++|+..|...+..|..
T Consensus 501 ~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 501 LATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHcc
Confidence 776 7899999999998887754
No 32
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.48 E-value=14 Score=49.02 Aligned_cols=217 Identities=19% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCc-cHHHHHHH
Q 001174 182 GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGP-RVESLNKR 260 (1132)
Q Consensus 182 ~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~l~~~~~~~qRQleaEk~K~~~~~-r~e~l~~~ 260 (1132)
..+|-+|+++.+..++.--+.+-+| +...+.|-..|.+...=++-+|++-.+---.-.+++ ..+.. -
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vR----------iayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~--~ 568 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVR----------IAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQN--Y 568 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceeh----------hhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccc--c
Confidence 4578889999998887754444444 333455555555555444445554443100000000 00000 0
Q ss_pred HHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHH
Q 001174 261 LSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLA 340 (1132)
Q Consensus 261 ~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~a 340 (1132)
=.+.+.-...++++...+ .-|-.|-+|..=|+.|+.--.-+-..=-||--|..|---||||+..-|-.-...
T Consensus 569 ~~~~~~L~~~V~~~v~sL--------lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 569 NTELQALHHTVEQMVSSL--------LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred chHHHHHHHHHHHHHHHH--------HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 012333333444443333 347778999988888775544343444478899999999999999999888877
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCC----hhhHHhhhcCCChHHHHHH
Q 001174 341 LQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDD----LGPLYDLLIDDPPEIRRAI 416 (1132)
Q Consensus 341 L~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed----~~~V~~Lvfd~~~~Vr~AA 416 (1132)
|..+-- ++ +-+.-.+-..+=|..-..|.+.-|-|.|++-++.|.+.|+|.-.- ++.|+.|+-+.+.=||+++
T Consensus 641 I~gvsi---~V-G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 641 IVGVSI---FV-GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred ccceEE---EE-eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHH
Confidence 765521 01 111123334444444458999999999999999999999998543 3466777889999999999
Q ss_pred HHHHHH
Q 001174 417 GELVYD 422 (1132)
Q Consensus 417 g~fv~~ 422 (1132)
-.|++.
T Consensus 717 ~~iI~~ 722 (1431)
T KOG1240|consen 717 LGIIAA 722 (1431)
T ss_pred HHHHHH
Confidence 999875
No 33
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.43 E-value=31 Score=46.98 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=99.9
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001174 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 361 (1132)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 361 (1132)
.|..|+-|..+++|..|++...+-+.+.|+.=-+-.-+-++---+.|.+-.||..++ +..+ ...-|.--+
T Consensus 304 ~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~--i~~~--------~v~~~~l~~ 373 (1266)
T KOG1525|consen 304 AFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVV--IVAC--------DVMKFKLVY 373 (1266)
T ss_pred HHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEE--EEEe--------ehhHhhhhh
Confidence 578999999999999999999999988888776655555555445554444444332 1111 011121112
Q ss_pred HH----HHhhhcccCchhHHHHHHHHHHHHHhc--CC-------CCCC-C--hhhHHhhhcCCChHHHHHHHHHHHHHHH
Q 001174 362 SN----RMIELADDIDVSVAVCAIGLVKQLLRH--QL-------LPDD-D--LGPLYDLLIDDPPEIRRAIGELVYDHLI 425 (1132)
Q Consensus 362 k~----RlVeM~~D~D~~Vav~AI~Ll~~l~~~--~~-------L~~e-d--~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~ 425 (1132)
-+ =+-|-++|+=..||.+||+=|+.++++ .. +++. + -+.++.++|...-..| ++.+.++
T Consensus 374 ~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r-----~~vE~il 448 (1266)
T KOG1525|consen 374 IPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR-----LLVERIL 448 (1266)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH-----HHHHHHH
Confidence 22 223334699999999999999999995 11 1111 1 2478888888776666 3333333
Q ss_pred HhhhcCcccCCCCCCCCchhhHHhHHHHHHHhhcCCCchhhHHHHhhccc
Q 001174 426 AQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEY 475 (1132)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~f~~~~~~~~ylVDsLwd~ 475 (1132)
+.-. .+. ..+.+..++++++.|..|... +.-.++.+|..
T Consensus 449 ~~~L-~P~-------~l~~q~Rmk~l~~~l~~~D~~---a~kaf~~i~~~ 487 (1266)
T KOG1525|consen 449 AEYL-VPY-------PLSTQERMKHLYQLLAGLDLN---AHKAFNEILKR 487 (1266)
T ss_pred HHhh-CCC-------CCCHHHHHHHHHHHHhcccHh---hhhHHHHHHHH
Confidence 3211 110 112244677888888776532 12335555554
No 34
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.68 E-value=1.9 Score=53.34 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=102.4
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccc----hhhh----------------hhh-------h------------
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQD----LYLK----------------YLG-------W------------ 324 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d----~YLK----------------YlG-------W------------ 324 (1132)
.+=.||..=.||...-+.||.. ..-.+.|+.- .-+. -=| |
T Consensus 287 C~~v~D~sl~VRV~AaK~lG~~-~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~ 365 (823)
T KOG2259|consen 287 CRAVRDRSLSVRVEAAKALGEF-EQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEE 365 (823)
T ss_pred HHHHhcCceeeeehHHHHhchH-HHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccc
Confidence 3456888889999999999864 4555555531 1111 122 3
Q ss_pred ---------------hcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHH
Q 001174 325 ---------------TLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLL 388 (1132)
Q Consensus 325 ---------------~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~ 388 (1132)
.|-|.--+||.+++-++..|--+ |.+. .+=-+=||.|-.|-...||..||.-|+.|.
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-------~~aldfLvDMfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-------VRALDFLVDMFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999643 4433 334445889999999999999999999999
Q ss_pred hcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 389 RHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 389 ~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
.++.|.++.++.+..-+=|.++.||.++-+++..
T Consensus 439 ~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 439 VHLAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988764
No 35
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.11 E-value=25 Score=45.77 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=87.2
Q ss_pred HHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc
Q 001174 273 DMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP 352 (1132)
Q Consensus 273 ~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~ 352 (1132)
.+...+|. .|.+|..|.-++.|-.-+..+-.|..+||-.+ +.++++-+|.++++..|.+|...|.+.+..-+...
T Consensus 332 ~~~~~v~p-~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~----~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 332 KYAKNVFP-SLLDRLKEKKSELRDALLKALDAILNSTPLSK----MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHHhhcc-hHHHHhhhccHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 33333443 46689999999999988888888888777654 67999999999999999999999999997543211
Q ss_pred cHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 353 TLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 353 ~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
--+.=...-++=++.+..|.|.+||..|.+.+..+.++
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 11222334556677788899999999999999998886
No 36
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=82.00 E-value=2.5 Score=40.92 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHHHhhCcccccc-------chhhhhhhhhcCC-----------------CChhHHHHHHHHHHh
Q 001174 290 IDPNIRMSCIQSLGVWILSYPSFFLQ-------DLYLKYLGWTLND-----------------KSASVRKSSVLALQN 343 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~~FL~-------d~YLKYlGW~L~D-----------------k~~~VR~~~L~aL~~ 343 (1132)
+.|+||...+.-|..++..||+..+. +.|+.++||.... ++...|...|.+|.+
T Consensus 23 i~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~~~~~~~s~s~~~~~~~~~~~~~~k~r~~~L~~L~~ 100 (102)
T PF12333_consen 23 ISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWSTQSSNRSSSVASSSSSSSKKKSKKWRLKVLQRLAK 100 (102)
T ss_pred CCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCCccCCCcceeeeccccccccccCHHHHHHHHHHHHH
Confidence 56999999999999999999999332 6899999999422 566677777776665
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=80.66 E-value=7.8 Score=37.34 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHH
Q 001174 298 CIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVA 377 (1132)
Q Consensus 298 Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Va 377 (1132)
|+.+.+.-+......+++ .-++-+--.+.|++..||..+..+|..+-+.-. ..-+..|.+ .-+-|...+.|.|.+|+
T Consensus 9 ~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~-IF~~L~kl~~D~d~~Vr 85 (97)
T PF12755_consen 9 GLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNE-IFDALCKLSADPDENVR 85 (97)
T ss_pred HHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHcCCchhHH
Confidence 444444333333333332 345666678999999999999999999975421 122445555 33467777789999999
Q ss_pred HHHHHHHHHHHh
Q 001174 378 VCAIGLVKQLLR 389 (1132)
Q Consensus 378 v~AI~Ll~~l~~ 389 (1132)
..| .+|..++|
T Consensus 86 ~~a-~~Ld~llk 96 (97)
T PF12755_consen 86 SAA-ELLDRLLK 96 (97)
T ss_pred HHH-HHHHHHhc
Confidence 888 66766654
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.01 E-value=8.8 Score=47.35 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=77.0
Q ss_pred CChhHHHHHHHHHHHHHhhC---ccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 290 IDPNIRMSCIQSLGVWILSY---PSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~y---P~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
-+|.||..|+.+||.-...- -....+..-+..+.-.|.|++..|-..|+++|..|-+.+.... .+|..-+..-|.
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~--~l~~~~~~~~L~ 166 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE--QLFDSNLLSKLK 166 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH--HHhCcchHHHHH
Confidence 67999999999999866443 2346788899999999999999999999999999987653322 245555566666
Q ss_pred hhcccCchhHHHHHHHHHHHHHhc
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
.+..-.+..||..+..++..|.++
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc
Confidence 766444668898888888888776
No 39
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=79.73 E-value=4.9 Score=51.35 Aligned_cols=99 Identities=24% Similarity=0.264 Sum_probs=72.3
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHH
Q 001174 283 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERF 361 (1132)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RF 361 (1132)
|.+-..|-.|.||...|..|| ..+..=|-+.++.-+--.|+|+++-||..|.-++.++|+- ++....++ +
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls----~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g-----~ 167 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLS----LLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG-----L 167 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc-----H
Confidence 445556888999999888887 4455555667778888889999999999999999999953 33333322 3
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 362 SNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 362 k~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
-.-+.+++.|.|+.|-..|..-+..+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 33566778899999988888877776654
No 40
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.27 E-value=9.6 Score=45.91 Aligned_cols=107 Identities=21% Similarity=0.143 Sum_probs=70.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.|.++.+|..+.++|| |+. .+.-...|-=+|.|.++.||..++.+|.. -. .+- -+.++.
T Consensus 96 ~d~~~~vr~aaa~ALg-~i~-------~~~a~~~L~~~L~~~~p~vR~aal~al~~-r~-~~~-----------~~~L~~ 154 (410)
T TIGR02270 96 QAGPEGLCAGIQAALG-WLG-------GRQAEPWLEPLLAASEPPGRAIGLAALGA-HR-HDP-----------GPALEA 154 (410)
T ss_pred cCCCHHHHHHHHHHHh-cCC-------chHHHHHHHHHhcCCChHHHHHHHHHHHh-hc-cCh-----------HHHHHH
Confidence 3777888888888888 221 11122334445688888888888855544 11 111 124555
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1132)
...|.|+.|+..|++.+..|-....++ .+...+-|.++.||.+|..=+
T Consensus 155 ~L~d~d~~Vra~A~raLG~l~~~~a~~-----~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 155 ALTHEDALVRAAALRALGELPRRLSES-----TLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HhcCCCHHHHHHHHHHHHhhccccchH-----HHHHHHcCCCHHHHHHHHHHH
Confidence 556999999999999888877654433 456667789999998887654
No 41
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.69 E-value=6.5 Score=49.00 Aligned_cols=143 Identities=21% Similarity=0.173 Sum_probs=99.0
Q ss_pred HHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc-
Q 001174 273 DMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV- 351 (1132)
Q Consensus 273 ~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~- 351 (1132)
++|-.--=|+|||=.-|-.-++|..-+..++.--.+-|.+ -..-|-||-=|+||....||+.|+.+|..+-.+=...
T Consensus 368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~e 445 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIRE 445 (823)
T ss_pred ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecH
Confidence 4444444589999999999999999999999988888874 3457889999999999999999999999997541111
Q ss_pred ccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc----------CCC-----CCCChhhHHhhhcC---CChHHH
Q 001174 352 PTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH----------QLL-----PDDDLGPLYDLLID---DPPEIR 413 (1132)
Q Consensus 352 ~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~----------~~L-----~~ed~~~V~~Lvfd---~~~~Vr 413 (1132)
..|..|.+ -..|...+||+..-.||....=. ++| =|.|.+.||..+++ .|+..-
T Consensus 446 eql~~il~--------~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv 517 (823)
T KOG2259|consen 446 EQLRQILE--------SLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRLV 517 (823)
T ss_pred HHHHHHHH--------HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhhH
Confidence 22333333 22567777777666554432110 122 26778888888873 566655
Q ss_pred HHH-HHHHHHHHH
Q 001174 414 RAI-GELVYDHLI 425 (1132)
Q Consensus 414 ~AA-g~fv~~~l~ 425 (1132)
.+. +.|++.+.+
T Consensus 518 ~s~m~rfl~kh~~ 530 (823)
T KOG2259|consen 518 LSNMGRFLEKHTS 530 (823)
T ss_pred HHHHHHHHHhccc
Confidence 554 456665544
No 42
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=76.69 E-value=7.7 Score=32.59 Aligned_cols=55 Identities=27% Similarity=0.222 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHH
Q 001174 331 ASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQL 387 (1132)
Q Consensus 331 ~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l 387 (1132)
+.||..++.+|-.+-... ...+..+....-+.|+.+..|.+..||..|+.-|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~--~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC--PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT--HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 479999999998864322 3457778888888999999888889999999877644
No 43
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.77 E-value=37 Score=43.03 Aligned_cols=209 Identities=19% Similarity=0.144 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHhhccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHH----HHHHHHHHhHHHHHH
Q 001174 164 FKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFI----SVAKMLGAQRETTQR 239 (1132)
Q Consensus 164 Fr~n~~eF~~~Lv~~~~~~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv----~va~~l~~~~~~~qR 239 (1132)
--..+..|...+|...+....=++ |.+.+..+|.--..|+--..|.-...+--.++..-. +|...|...+ ..|
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~D-lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l--~~R 134 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEED-LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL--LIR 134 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhh-HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH--HHH
Confidence 345678899888887775433333 888888888888889888888766444333333111 1222222211 123
Q ss_pred HHHHHHcccCCCccHHHHHHHHHHHHh----hHHHHHHHHHH------------------h----hcceEeccccCCChh
Q 001174 240 QLNAEKKKRVEGPRVESLNKRLSMTHK----NITDLEDMMRK------------------I----FTGLFVHRYRDIDPN 293 (1132)
Q Consensus 240 QleaEk~K~~~~~r~e~l~~~~~e~~~----~~~~i~~~l~~------------------i----F~~VFvhRyRDv~p~ 293 (1132)
-++.|+. -|++++.. +..+|. ..-.+.+.+.. . .-+..|.|-|||..-
T Consensus 135 l~Drep~-----VRiqAv~a-LsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~a 208 (892)
T KOG2025|consen 135 LKDREPN-----VRIQAVLA-LSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGA 208 (892)
T ss_pred HhccCch-----HHHHHHHH-HHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHH
Confidence 3332221 24444321 222220 00111111111 1 125689999999999
Q ss_pred HHHHHHHHHHHHHhhCccccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc--c
Q 001174 294 IRMSCIQSLGVWILSYPSFFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA--D 370 (1132)
Q Consensus 294 IR~~Ci~eLG~Wi~~yP~~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~--~ 370 (1132)
+|...-+.+--=| .-.|+ .+.....+-|.|+|..-+||.+|.++|..=+= .|. -.+|+|+. .
T Consensus 209 nRrlvY~r~lpki---d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl---------~~~---dgni~ElL~~l 273 (892)
T KOG2025|consen 209 NRRLVYERCLPKI---DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWL---------RFS---DGNILELLERL 273 (892)
T ss_pred HHHHHHHHhhhhh---hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh---------hhc---cccHHHHHHHh
Confidence 9998877776554 23344 35778899999999999999999998865321 111 12566666 4
Q ss_pred cCch--hHHHHHHHHHHHHHhcCCCCCC
Q 001174 371 DIDV--SVAVCAIGLVKQLLRHQLLPDD 396 (1132)
Q Consensus 371 D~D~--~Vav~AI~Ll~~l~~~~~L~~e 396 (1132)
|+.. +|+|.||+-+-.+.+-.++...
T Consensus 274 dvsnss~vavk~lealf~~v~e~v~~~k 301 (892)
T KOG2025|consen 274 DVSNSSEVAVKALEALFSGVREDVGSCK 301 (892)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 6654 5999999987776555544533
No 44
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.00 E-value=2.6e+02 Score=36.05 Aligned_cols=90 Identities=22% Similarity=0.428 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccC
Q 001174 293 NIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDI 372 (1132)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~ 372 (1132)
..=.-||.-+|. +..-..|-+|-+ |.|- =.+...-||.++-..|.+||++....-..+..++ |||.+..|.
T Consensus 129 ~LAL~~I~niG~--re~~ea~~~DI~-KlLv--S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~----riv~LL~D~ 199 (938)
T KOG1077|consen 129 CLALHCIANIGS--REMAEAFADDIP-KLLV--SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ----RIVHLLDDQ 199 (938)
T ss_pred HHHHHHHHhhcc--HhHHHHhhhhhH-HHHh--CCcchHHHHHHHHHHHHHHHhcCccccChhhHHH----HHHHHhCcc
Confidence 344556666664 233445555555 4432 3567888999999999999986433345566665 899999999
Q ss_pred chhHHHHHHHHHHHHHhcC
Q 001174 373 DVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 373 D~~Vav~AI~Ll~~l~~~~ 391 (1132)
|.+|...|+.|+..|.+..
T Consensus 200 ~~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 200 HMGVVTAATSLIEALVKKN 218 (938)
T ss_pred ccceeeehHHHHHHHHHcC
Confidence 9999999999999999974
No 45
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=73.96 E-value=20 Score=47.58 Aligned_cols=177 Identities=23% Similarity=0.353 Sum_probs=105.2
Q ss_pred chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCccc--HHHHHHHHHHHHhhhcccC-chhH-----------HHHHH
Q 001174 316 DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPT--LGLFTERFSNRMIELADDI-DVSV-----------AVCAI 381 (1132)
Q Consensus 316 d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~--L~lFt~RFk~RlVeM~~D~-D~~V-----------av~AI 381 (1132)
|.-|-|+--.+.|+.+.||..+|..|..+...=..++. -..|-+..-++|-.|+.|. ...| |..|.
T Consensus 461 DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 461 DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 46789999999999999999999999999864222333 4569999999999999884 3333 33444
Q ss_pred HHHHH---HHhcCCCCCCChh--------------------hHHhhhcCCChHHHHHHHHHHHH--HHHHhhhcCcccCC
Q 001174 382 GLVKQ---LLRHQLLPDDDLG--------------------PLYDLLIDDPPEIRRAIGELVYD--HLIAQKFNSSQSGL 436 (1132)
Q Consensus 382 ~Ll~~---l~~~~~L~~ed~~--------------------~V~~Lvfd~~~~Vr~AAg~fv~~--~l~~~~~~~~~~~~ 436 (1132)
+.+.. +..+|++++.+-+ .|..|+-|+.+-|+++.-+=+.. .+| +.
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF---------Gk 611 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF---------GK 611 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh---------hh
Confidence 44332 3335777655432 23455556666666666553221 112 11
Q ss_pred CCCCCCchhhHHhHHHHHHHhhcCCCchhhHHHHhhccccc---cCCChHHHHHHHcCCCCCCCCCchhhHHHHHHHHH
Q 001174 437 KGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMK---AMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSA 512 (1132)
Q Consensus 437 ~~~~~~~~~~~l~~l~~~l~~f~~~~~~~~ylVDsLwd~~~---~lkDWe~m~~lLL~D~~~~~L~d~~e~~LieiL~a 512 (1132)
++.+ ..-|.-|+.||-+ .+.. |=-|+||... ..--|...-+|||- --++.|+|.||.+++..|-|
T Consensus 612 ~ksN----D~iLshLiTfLND--kDw~----LR~aFfdsI~gvsi~VG~rs~seyllP-Ll~Q~ltD~EE~Viv~aL~~ 679 (1431)
T KOG1240|consen 612 EKSN----DVILSHLITFLND--KDWR----LRGAFFDSIVGVSIFVGWRSVSEYLLP-LLQQGLTDGEEAVIVSALGS 679 (1431)
T ss_pred cccc----cchHHHHHHHhcC--ccHH----HHHHHHhhccceEEEEeeeeHHHHHHH-HHHHhccCcchhhHHHHHHH
Confidence 1111 1122223333322 1211 2235666654 55778766666652 11237899999998877754
No 46
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.69 E-value=22 Score=44.92 Aligned_cols=99 Identities=20% Similarity=0.140 Sum_probs=75.9
Q ss_pred cCCChhHHHHHHHHHHHHHhh----CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILS----YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~----yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
+|=.|.||+.-+..+..-+-. -|..-+.+--=|.++-+=+|++.+||..+++.|.-+..||-.-+-++.-. +
T Consensus 230 ~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~L----p 305 (1005)
T KOG1949|consen 230 EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLL----P 305 (1005)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHH----H
Confidence 788999999999888743333 36666666555667888899999999999999999998875444443333 3
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
++=-.-.|+-..|||.++.++..|..+
T Consensus 306 al~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 306 ALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred hcchhhhccchhHHHHHHHHHHHHHhh
Confidence 444444799999999999999999886
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=71.19 E-value=4.4 Score=34.06 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHhhCcccc--ccchhhhhhhhhcCCCChhHHHHHHHHHHhh
Q 001174 292 PNIRMSCIQSLGVWILSYPSFF--LQDLYLKYLGWTLNDKSASVRKSSVLALQNL 344 (1132)
Q Consensus 292 p~IR~~Ci~eLG~Wi~~yP~~F--L~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~L 344 (1132)
|.+|..++..||.=....|... ..+.-+..|.=+|.|.+..||..+..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999998333333332 2356678888999999999999999998764
No 48
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=70.34 E-value=5.1 Score=30.15 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=21.5
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001174 320 KYLGWTLNDKSASVRKSSVLALQNLYE 346 (1132)
Q Consensus 320 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1132)
-++--+|+|++++||..++.+|..+.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 345567899999999999999998865
No 49
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.57 E-value=9.3 Score=50.42 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=94.8
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 286 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
+|-| |+|++.-.-+||..|..- ..|++. .|..|.-+|. -+++-+|-.++-+|..|-=. +..-++.||+ -
T Consensus 933 ~~sd--p~Lq~AAtLaL~klM~iS-a~fces-~l~llftimeksp~p~IRsN~VvalgDlav~--fpnlie~~T~----~ 1002 (1251)
T KOG0414|consen 933 LFSD--PELQAAATLALGKLMCIS-AEFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVR--FPNLIEPWTE----H 1002 (1251)
T ss_pred cCCC--HHHHHHHHHHHHHHhhhh-HHHHHH-HHHHHHHHHhcCCCceeeecchheccchhhh--cccccchhhH----H
Confidence 4555 999999999999998654 455554 4566666666 89999999999888877311 1122344555 5
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcCCCCCC-ChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQLLPDD-DLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~e-d~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
|-.+..|.+..||..|+-+|+-|.-+|++--+ .+.....++-|.++.|+.-|-.|..+
T Consensus 1003 Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 1003 LYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 56677899999999999999998888766543 34466677889999999988888664
No 50
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=68.48 E-value=9.5 Score=36.75 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=56.6
Q ss_pred HHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001174 271 LEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYE 346 (1132)
Q Consensus 271 i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1132)
+.++++.|.+.|+ .=+-|-++.+|-.+.++|+.-.+..+..++. +.-+.+|.-.+.|.++.||..| ..|-+|.+
T Consensus 21 ~~~~l~~Il~pVL-~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 21 ISKYLDEILPPVL-KCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 4455555555554 5578999999999999999999888887765 2335677888899999999988 66666654
No 51
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.69 E-value=17 Score=45.76 Aligned_cols=116 Identities=27% Similarity=0.298 Sum_probs=87.1
Q ss_pred HhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhh
Q 001174 188 VLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKN 267 (1132)
Q Consensus 188 ~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~l~~~~~~~qRQleaEk~K~~~~~r~e~l~~~~~e~~~~ 267 (1132)
.+|++=...|..|=.+++-.+|-|||.-.+++.+-+=.++ .
T Consensus 216 ~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i---P------------------------------------ 256 (1005)
T KOG1949|consen 216 SIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI---P------------------------------------ 256 (1005)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc---C------------------------------------
Confidence 3566667788999999999999999998888876664431 1
Q ss_pred HHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccc-cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001174 268 ITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSF-FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE 346 (1132)
Q Consensus 268 ~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~-FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1132)
...+.++|..||+.+= .|...++|...++.|-. |.-.|.. =+=-.-|+-+|.+|+|++..||.+.++.|.++-.
T Consensus 257 ~~i~~~ll~kI~d~~a----~dt~s~VR~svf~gl~~-~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELA----FDTSSDVRCSVFKGLPM-ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHhh----hccchheehhHhcCcHH-HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 1257778888888763 58888999999888763 3444443 2223347788999999999999999999998854
Q ss_pred c
Q 001174 347 V 347 (1132)
Q Consensus 347 ~ 347 (1132)
.
T Consensus 332 v 332 (1005)
T KOG1949|consen 332 V 332 (1005)
T ss_pred h
Confidence 3
No 52
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=67.61 E-value=11 Score=42.10 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=47.0
Q ss_pred hcCCCChhHHHHHHHHHHhhhhc--------CCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 325 TLNDKSASVRKSSVLALQNLYEV--------DDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 325 ~L~Dk~~~VR~~~L~aL~~Ly~~--------~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
+|+|.++.|-..|+.+...+|.. +........++. ||.+|+.|-.+..++|+..||+.+..+.-.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~-lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNE-LKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHH-HHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 48999999999999999999952 111122344555 999999997666777888888877666554
No 53
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.38 E-value=32 Score=41.98 Aligned_cols=134 Identities=19% Similarity=0.104 Sum_probs=95.7
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~R 360 (1132)
-.|-+|-+..+|..|+..||.--..-|+.-.. ..-|--+-..|+ |-+.+|-+++++.|..+-+...+ -.++.|.--
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~-~~l~~~~l~ 342 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN-DDLESYLLN 342 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh-cchhhhchh
Confidence 36899999999999999999765544654332 122222333444 46689999999999999865443 345555444
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhc--CCCCCCChhhH-------HhhhcCCChHHHHHHHH
Q 001174 361 FSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPDDDLGPL-------YDLLIDDPPEIRRAIGE 418 (1132)
Q Consensus 361 Fk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~--~~L~~ed~~~V-------~~Lvfd~~~~Vr~AAg~ 418 (1132)
.-.|+..|-.|-+.++|+.||.|...|.+- |=-++.+.+.| .-.+.|.+|.|++|.+.
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 777888999999999999999999999884 32233333333 34567999999999875
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.26 E-value=13 Score=47.11 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=80.4
Q ss_pred HhhcceEeccccCCChhHHHHHHHHHH-HHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC-CCcccH
Q 001174 277 KIFTGLFVHRYRDIDPNIRMSCIQSLG-VWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD-DNVPTL 354 (1132)
Q Consensus 277 ~iF~~VFvhRyRDv~p~IR~~Ci~eLG-~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~-~~~~~L 354 (1132)
.++-..|++-|-|=+|.||..-+..+| .|+... ...+..-+.-.|.|.++-||..+.-...++|..+ +.....
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i-----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~ 159 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKI-----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDS 159 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHH-----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcccc
Confidence 345568999999999999999999888 222222 2334566788999999999999999999999643 222111
Q ss_pred HHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 355 GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 355 ~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
+ |-+-+-+|..|.|+.|.+.|+..|..|.+..
T Consensus 160 g-----l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 160 G-----LVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred c-----hhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 1 4456777888999999999999999999863
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=64.76 E-value=4.4e+02 Score=34.62 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=104.3
Q ss_pred cHHHHHHHHHH--HHhhHHHHHHHHHHhhcceEeccc--------cCCChhHHHHHHHHHHHHHhhCcc-ccc-cchhhh
Q 001174 253 RVESLNKRLSM--THKNITDLEDMMRKIFTGLFVHRY--------RDIDPNIRMSCIQSLGVWILSYPS-FFL-QDLYLK 320 (1132)
Q Consensus 253 r~e~l~~~~~e--~~~~~~~i~~~l~~iF~~VFvhRy--------RDv~p~IR~~Ci~eLG~Wi~~yP~-~FL-~d~YLK 320 (1132)
.+..|.+.+.. ..++++.++.++..+-.|.=|..+ -=-+.++|.+|--.|...-...|+ .+| -++..|
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~K 112 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQ 112 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHH
Confidence 45566666543 345677777777777666211111 011567888888888877777787 444 233444
Q ss_pred hhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc--CCCCC-CC
Q 001174 321 YLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPD-DD 397 (1132)
Q Consensus 321 YlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~--~~L~~-ed 397 (1132)
-|.|+++-+|--+|+.|..+=. + . +.+-.-.-+.....|.++-||-.|+--+..|++. ++..+ .-
T Consensus 113 ----Dl~d~Np~IRaLALRtLs~Ir~-~----~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~ 180 (746)
T PTZ00429 113 ----DTTNSSPVVRALAVRTMMCIRV-S----S---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDF 180 (746)
T ss_pred ----HcCCCCHHHHHHHHHHHHcCCc-H----H---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccch
Confidence 5789999999999999988732 2 2 2222222233334799999999998888888875 33332 34
Q ss_pred hhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 398 LGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 398 ~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
++.+..++-|.++.|...|...+++
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCE 205 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHH
Confidence 5788999999999998888777665
No 56
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=64.43 E-value=26 Score=41.75 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=57.3
Q ss_pred HHHHHHHHhhCc----cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCc-
Q 001174 299 IQSLGVWILSYP----SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDID- 373 (1132)
Q Consensus 299 i~eLG~Wi~~yP----~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D- 373 (1132)
.-.|..-.+.+| +..+.....+-...+|+|. .+||..+++.+..+..+++... .|.+-=-+-+|-++.|+|
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~---~~~~l~id~~ii~SL~~~~ 79 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQ---ILLKLHIDIFIIRSLDRDN 79 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHH---HHHHcCCchhhHhhhcccC
Confidence 344455556677 4444444444444566666 9999999999999998765433 333322334555554444
Q ss_pred -hhH-HHHHHHHHHHHHhc
Q 001174 374 -VSV-AVCAIGLVKQLLRH 390 (1132)
Q Consensus 374 -~~V-av~AI~Ll~~l~~~ 390 (1132)
.++ +++|++++..+...
T Consensus 80 ~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEI 98 (371)
T ss_pred CChHHHHHHHHHHHHHHHh
Confidence 333 88999999999987
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=64.14 E-value=11 Score=28.40 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
+.++++..|.+++||..|+.-+..|.++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 5678888999999999999988888764
No 58
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=63.53 E-value=65 Score=41.68 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCCh
Q 001174 252 PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSA 331 (1132)
Q Consensus 252 ~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~ 331 (1132)
.|++++++-+.....=.. +-.++.++.+-|= -| +++++.+|--.|-..-...|+.-+- -..-+---|.|+++
T Consensus 35 ~kidAmK~iIa~M~~G~d-mssLf~dViK~~~---tr--d~ElKrL~ylYl~~yak~~P~~~lL--avNti~kDl~d~N~ 106 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED-MSSLFPDVIKNVA---TR--DVELKRLLYLYLERYAKLKPELALL--AVNTIQKDLQDPNE 106 (757)
T ss_pred HHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH---hc--CHHHHHHHHHHHHHHhccCHHHHHH--HHHHHHhhccCCCH
Confidence 466666666655532222 5555555555443 33 5688888888888777777753221 12233345789999
Q ss_pred hHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc--CCCCCC-ChhhHHhhhcCC
Q 001174 332 SVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPDD-DLGPLYDLLIDD 408 (1132)
Q Consensus 332 ~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~--~~L~~e-d~~~V~~Lvfd~ 408 (1132)
.+|..+|+.|..|= ...+..-+-+-|.....|...-||-.|+=-+..|++. .+..+. -++..-.|++|+
T Consensus 107 ~iR~~AlR~ls~l~--------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 107 EIRGFALRTLSLLR--------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence 99999999998772 2233444556777888899999999999999999875 355555 566667788899
Q ss_pred ChHHHHHHHH
Q 001174 409 PPEIRRAIGE 418 (1132)
Q Consensus 409 ~~~Vr~AAg~ 418 (1132)
+|.|-.+|--
T Consensus 179 dP~Vi~nAl~ 188 (757)
T COG5096 179 DPIVIANALA 188 (757)
T ss_pred CchHHHHHHH
Confidence 9887665543
No 59
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.57 E-value=1e+02 Score=38.60 Aligned_cols=107 Identities=21% Similarity=0.142 Sum_probs=73.2
Q ss_pred hCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccH-HHHHHHHHHHHhhhcccCchhHHHHHHHHHH
Q 001174 308 SYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTL-GLFTERFSNRMIELADDIDVSVAVCAIGLVK 385 (1132)
Q Consensus 308 ~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L-~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~ 385 (1132)
..|. .=+=+..++|+--.+--|...||..|++.|..+-.+ +..+ +...+-.+..|.+-..|.+..||.+|+..|+
T Consensus 81 ~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~---v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~ 157 (885)
T COG5218 81 DDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV---VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLC 157 (885)
T ss_pred CChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4455 334456789999999999999999999999988753 2221 1122224555666668999999999999999
Q ss_pred HHHhcCCCCCCChhhHHhhh--cCCChHHHHHHH
Q 001174 386 QLLRHQLLPDDDLGPLYDLL--IDDPPEIRRAIG 417 (1132)
Q Consensus 386 ~l~~~~~L~~ed~~~V~~Lv--fd~~~~Vr~AAg 417 (1132)
.+.+...=++.++..+...+ .|....||++|-
T Consensus 158 ~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 158 YYQEMELNEENRIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 88865422222333332222 278889999886
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=61.39 E-value=48 Score=40.04 Aligned_cols=111 Identities=13% Similarity=-0.015 Sum_probs=83.2
Q ss_pred eccc-cCCChhHHHHHHHHHHHHHhhCccccccchh-hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001174 284 VHRY-RDIDPNIRMSCIQSLGVWILSYPSFFLQDLY-LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 361 (1132)
Q Consensus 284 vhRy-RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 361 (1132)
+..+ .|-+++.|..|+-.|+.| ++.- +.-+-=.|-|.++.||..+.++|..+.... -
T Consensus 60 ~~aL~~d~~~ev~~~aa~al~~~---------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------------a 118 (410)
T TIGR02270 60 VSALAEADEPGRVACAALALLAQ---------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------------A 118 (410)
T ss_pred HHHHhhCCChhHHHHHHHHHhcc---------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------------H
Confidence 3344 377799999998888766 2223 677777899999999999999998775321 4
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 362 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 362 k~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
...|+.+..|.|+.|+..++.++..... + =...+..++=|.++.||.+|..-+-
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~-~-----~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH-D-----PGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-C-----hHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4578888889999999999877766221 1 1346667777999999999988764
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=61.20 E-value=91 Score=42.87 Aligned_cols=99 Identities=20% Similarity=0.349 Sum_probs=75.2
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHH
Q 001174 283 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFS 362 (1132)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk 362 (1132)
...|.-|....+|-..++-+|.++..+|+...+ |.--+.--..|+...||..+|+.|..+|... +.+.-+++ -.
T Consensus 860 Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q--yY~~i~erIlDtgvsVRKRvIKIlrdic~e~---pdf~~i~~-~c 933 (1692)
T KOG1020|consen 860 VHGRLNDSSASVREAALDLVGRFVLSIPELIFQ--YYDQIIERILDTGVSVRKRVIKILRDICEET---PDFSKIVD-MC 933 (1692)
T ss_pred HHHhhccchhHHHHHHHHHHhhhhhccHHHHHH--HHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---CChhhHHH-HH
Confidence 356889999999999999999999999997654 6666777789999999999999999999643 33444554 33
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHH
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQL 387 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l 387 (1132)
-||+.-..|-+-+|.-.+...+..+
T Consensus 934 akmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 934 AKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHH
Confidence 3555555677766766665544443
No 62
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=60.98 E-value=36 Score=42.77 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=78.4
Q ss_pred CChhHHHH--HHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 290 IDPNIRMS--CIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 290 v~p~IR~~--Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
.+|+||.. .+.+|..-...|. +.|+.....+-+--++.|+.+.+|...+..|..+-=+.+. ..-..|..||..|
T Consensus 429 ~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de-~~k~~~~~ki~a~ 507 (678)
T KOG1293|consen 429 MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE-EEKFQLLAKIPAN 507 (678)
T ss_pred hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH-HHHHHHHHHhhHH
Confidence 57777765 4556667777664 4699999999999999999999999999999999433322 2345677888888
Q ss_pred Hhhhc-ccCchhHHHHHHHHHHHHHhc
Q 001174 365 MIELA-DDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 365 lVeM~-~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
.+-|- .|.|+.|.+++.+|+..+.-.
T Consensus 508 ~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 508 LILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 77766 899999999999988877643
No 63
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=59.62 E-value=15 Score=36.35 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHhhCccccccchh-----hhhhhhhcCCCChhHHHHHHHHHHh
Q 001174 293 NIRMSCIQSLGVWILSYPSFFLQDLY-----LKYLGWTLNDKSASVRKSSVLALQN 343 (1132)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-----LKYlGW~L~Dk~~~VR~~~L~aL~~ 343 (1132)
.||.-++.-|..|+..||..|-++.. ..++.+.-.++.+..+..+...+.+
T Consensus 70 ~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~~~~~ 125 (127)
T smart00229 70 RVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQELLQR 125 (127)
T ss_pred HHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHHh
Confidence 38888999999999999998888753 2455555555566665555544443
No 64
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=53.22 E-value=98 Score=30.67 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHHHhhCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLAL 341 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL 341 (1132)
.+++...|++.++.|+.-.|. .+.+..++..+.-.|++. ..|..|+..|
T Consensus 99 ~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 99 NEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 699999999999999997755 455667899988888444 4477766543
No 65
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.10 E-value=73 Score=41.39 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=94.6
Q ss_pred CCChhHHHHHHHHHHHHHhhC-ccc-cccchhhhhhhhhcCCCChhHHHHHHH---HHHhhhh------------cC---
Q 001174 289 DIDPNIRMSCIQSLGVWILSY-PSF-FLQDLYLKYLGWTLNDKSASVRKSSVL---ALQNLYE------------VD--- 348 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~y-P~~-FL~d~YLKYlGW~L~Dk~~~VR~~~L~---aL~~Ly~------------~~--- 348 (1132)
|=-+-||.--+..|..|+... +.. -..-.-|+.+-=+|-|.++=|=+.|++ .|..+|. +.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k 817 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKK 817 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccC
Confidence 445679999999999999843 332 223455777778899999999999999 4444442 11
Q ss_pred ---CCc-----------ccHHHHHHHHHHHHhhhc----ccCchhHHHHHHHHHHHHHhc--CCCCCCChhhHHhhhc--
Q 001174 349 ---DNV-----------PTLGLFTERFSNRMIELA----DDIDVSVAVCAIGLVKQLLRH--QLLPDDDLGPLYDLLI-- 406 (1132)
Q Consensus 349 ---~~~-----------~~L~lFt~RFk~RlVeM~----~D~D~~Vav~AI~Ll~~l~~~--~~L~~ed~~~V~~Lvf-- 406 (1132)
+.+ ..++....+|+.+|+.-+ +|.|..-|..++..+..+.+. +.+++ ....|...|.
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l 896 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSL 896 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHH
Confidence 111 123445777888888755 588888899999988888885 34454 5555555554
Q ss_pred ---CCChHHHHHHHHHHHHH
Q 001174 407 ---DDPPEIRRAIGELVYDH 423 (1132)
Q Consensus 407 ---d~~~~Vr~AAg~fv~~~ 423 (1132)
|..+.+|+||+..+..-
T Consensus 897 ~~~d~s~~vRRaAv~li~~l 916 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAEL 916 (982)
T ss_pred HccCCchhhHHHHHHHHHHH
Confidence 88999999999988753
No 66
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=49.99 E-value=17 Score=29.66 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHH
Q 001174 301 SLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLAL 341 (1132)
Q Consensus 301 eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL 341 (1132)
.|+.-+...|...-.+.-++-+.--|.|.++.||..++..|
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35666677888888888899999999999999999998753
No 67
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.60 E-value=7.7e+02 Score=32.46 Aligned_cols=117 Identities=18% Similarity=0.164 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD 370 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~ 370 (1132)
+++|+.+.--.|-.+-..-|+.=|= -..||--+|.|+++.+|--+|+.|..+ +.+-..+-+-+= |-+.+.
T Consensus 84 n~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN~LiRasALRvlSsI-Rvp~IaPI~llA-------Ik~~~~ 153 (968)
T KOG1060|consen 84 NIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPNQLIRASALRVLSSI-RVPMIAPIMLLA-------IKKAVT 153 (968)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCcHHHHHHHHHHHHhc-chhhHHHHHHHH-------HHHHhc
Confidence 6789999888888888777876442 246788999999999999999999877 233233322222 223457
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCh-hhHHhhhcCCChHHHHHHH
Q 001174 371 DIDVSVAVCAIGLVKQLLRHQLLPDDDL-GPLYDLLIDDPPEIRRAIG 417 (1132)
Q Consensus 371 D~D~~Vav~AI~Ll~~l~~~~~L~~ed~-~~V~~Lvfd~~~~Vr~AAg 417 (1132)
|--+-||-.|-..+..|+..+-=.-+++ +-|-.|+-|..|.|.-+|+
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv 201 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAV 201 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHH
Confidence 8888999999988888888752111233 3445566677777665554
No 68
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.86 E-value=83 Score=37.64 Aligned_cols=81 Identities=25% Similarity=0.171 Sum_probs=64.9
Q ss_pred hhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHH-HHHHHHHHHHhhhcccCchhHHHHHHHHHH
Q 001174 307 LSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG-LFTERFSNRMIELADDIDVSVAVCAIGLVK 385 (1132)
Q Consensus 307 ~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~-lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~ 385 (1132)
..++..+-..-+||-+--.+.--++.||..++..|..+..+ ....+. +-+. .-+.+.+|..|.|..||-..++++.
T Consensus 48 ~~~~~t~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s--~p~~l~~~~~~-ll~~~~~~i~D~~~~vR~~~~qll~ 124 (393)
T KOG2149|consen 48 DSGLATSKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKS--HPAELQSHLYA-LLQKLRELILDDDSLVRDALYQLLD 124 (393)
T ss_pred ccCCccccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHh--ChHHHHHHHHH-HHHHhhhhhcCccccHHHHHHHHHH
Confidence 46778888889999999999999999999999999999876 222332 3333 3347889999999999999999998
Q ss_pred HHHhc
Q 001174 386 QLLRH 390 (1132)
Q Consensus 386 ~l~~~ 390 (1132)
.+.-+
T Consensus 125 ~~i~~ 129 (393)
T KOG2149|consen 125 SLILP 129 (393)
T ss_pred HHHhh
Confidence 86554
No 69
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=47.66 E-value=21 Score=35.92 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001174 299 IQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV 347 (1132)
Q Consensus 299 i~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 347 (1132)
++||..|...-|..|.+ -+-||.-=|+|+++.|.++||+.|..|...
T Consensus 22 ~~Eia~~t~~s~~~~~e--i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~ 68 (122)
T cd03572 22 YEEIAKLTRKSVGSCQE--LLEYLLKRLKRSSPHVKLKVLKIIKHLCEK 68 (122)
T ss_pred HHHHHHHHHcCHHHHHH--HHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence 57888888887777764 788999999999999999999999999754
No 70
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.47 E-value=1.1e+02 Score=42.45 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=82.0
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhh-hhcCCCcccHHHHHHHHH
Q 001174 285 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNL-YEVDDNVPTLGLFTERFS 362 (1132)
Q Consensus 285 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~L-y~~~~~~~~L~lFt~RFk 362 (1132)
.=|||++--+++.-+...-.| ..++..=+.+.+++-|+ -+..+..-+||.++|+-++-. |.+. ++ ..+.=-+...
T Consensus 1495 ~~y~~~d~a~~~a~~~~~lm~-~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~-Fv-~~~~~r~dI~ 1571 (1710)
T KOG1851|consen 1495 NTYRDVDLAKNSALLCHSLMS-LSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI-FV-SQELRRDDIR 1571 (1710)
T ss_pred cccccchHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-hc-ccchhHHHHH
Confidence 348999999988877777777 57888889999999999 566677889999999988865 5432 21 2222223455
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQLLP 394 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~ 394 (1132)
.++.+...|.+.+|+.+|..+|..|.+.+.+.
T Consensus 1572 ~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1572 KLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 57777778999999999999999999986554
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=1.4e+02 Score=38.77 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccC--CChhHHHHHHHH
Q 001174 224 ISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRD--IDPNIRMSCIQS 301 (1132)
Q Consensus 224 v~va~~l~~~~~~~qRQleaEk~K~~~~~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRD--v~p~IR~~Ci~e 301 (1132)
|.-|++..+++...+++....|+ ++|+ .++.-|..||.-
T Consensus 17 IraakT~AEEr~vI~kE~a~IRa---------------------------------------~ire~~~d~~~r~rniaK 57 (866)
T KOG1062|consen 17 IRAAKTAAEERAVIQKECAAIRA---------------------------------------SIREPTNDPRKRHRNIAK 57 (866)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH---------------------------------------HhcCCCCCHHHHHHHHHH
Q ss_pred HH-HHHhhCcccccc-------------chhhhhhhhhc-----------------------------------------
Q 001174 302 LG-VWILSYPSFFLQ-------------DLYLKYLGWTL----------------------------------------- 326 (1132)
Q Consensus 302 LG-~Wi~~yP~~FL~-------------d~YLKYlGW~L----------------------------------------- 326 (1132)
|- .-|.-||.+|=+ +.-+-|||-||
T Consensus 58 LlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~ 137 (866)
T KOG1062|consen 58 LLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP 137 (866)
T ss_pred HHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH
Q ss_pred --------------CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 327 --------------NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 327 --------------~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
.-.++-||.+|+..+.++..+. ...+++|...|+.+|-+ ++.+|=..++.++..|.+.+
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~~~~~lL~e----k~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVIAFRKLLCE----KHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhHHHHHHHhh----cCCceeeeHHHHHHHHHhcC
No 72
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=45.72 E-value=1.5e+02 Score=31.06 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=46.8
Q ss_pred HHHHHhHHHHHHHHHHHHcccCCC----------ccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEecccc
Q 001174 228 KMLGAQRETTQRQLNAEKKKRVEG----------PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYR 288 (1132)
Q Consensus 228 ~~l~~~~~~~qRQleaEk~K~~~~----------~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyR 288 (1132)
..+...+.+.+|+|+.-.+.+.+. ..++.+++..++.+++++.+++.+..-+..|=++||.
T Consensus 19 ~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYn 89 (151)
T PF14584_consen 19 IILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYN 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEcc
Confidence 344566777888888775543321 3466778888888899999999999999999999995
No 73
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=44.47 E-value=5.4e+02 Score=32.55 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=54.8
Q ss_pred hcCCCChhHHHHHHHHHHhhhh------cCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc-----CCC
Q 001174 325 TLNDKSASVRKSSVLALQNLYE------VDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-----QLL 393 (1132)
Q Consensus 325 ~L~Dk~~~VR~~~L~aL~~Ly~------~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~-----~~L 393 (1132)
..+|+.+.||..+..+...+-. .+.+.+.+ |..|- +.-+.--+.+++++..|..+ .+.
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsl----------l~~l~-~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSL----------LGSLL-EAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhh----------HHHHH-HHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 3789999999998887776643 33332221 11111 12445566677777777665 122
Q ss_pred CCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 394 PDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 394 ~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
-++=+-.+.+-++|.++.||+|+-+-+..
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 23334466788899999999999887653
No 74
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=42.36 E-value=83 Score=30.11 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=47.2
Q ss_pred cCCCChhHHHHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 326 LNDKSASVRKSSVLALQNLYEVDD-NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 326 L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
|+|+.+.||..+|..|.+|.+.++ .... ..+.-.=+.++..|.|+=|=..||+.+..|...
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~~~~~~----~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKSEPVID----IPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCCcchhh----HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 799999999999999999998876 2222 222233344556799999999999999888775
No 75
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=40.77 E-value=6.1e+02 Score=29.04 Aligned_cols=201 Identities=16% Similarity=0.179 Sum_probs=100.9
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCC-CCCCChhhHHhhhcCCChHHH
Q 001174 336 SSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQL-LPDDDLGPLYDLLIDDPPEIR 413 (1132)
Q Consensus 336 ~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~-~D~D~~Vav~AI~Ll~~l~~~~~-L~~ed~~~V~~Lvfd~~~~Vr 413 (1132)
+||..++.+.++-...-.=.....-.-+.||-=+ .-.|..||..|++.+....=.+. +..+-+.-++..+-.++..|+
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 5677777776553311000112122334555434 66777898888876665543321 111112122222324599999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCCCCCCCCchhhHHhHHHHHHHhhcC--CCchhhHHHHhhcc--ccccCCChHH-HHHH
Q 001174 414 RAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSA--DPILSIYVIDDVWE--YMKAMKDWKC-IISM 488 (1132)
Q Consensus 414 ~AAg~fv~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~f~~--~~~~~~ylVDsLwd--~~~~lkDWe~-m~~l 488 (1132)
..|.+-+++-+..-.... .......+ .......++++|..+-. .++..+.+++++-. -.+.+.+|.. +..+
T Consensus 82 ~~al~~l~Dll~~~g~~~--~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L 157 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDI--FDSESDND--ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL 157 (298)
T ss_pred HHHHHHHHHHHHHcCchh--ccchhccC--ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999998888665422111 11111100 11122334444443322 33455666777655 3456677444 4444
Q ss_pred Hc--CCCCCCCCCchhhHHHHHHHHHHHHHHhccCCCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHhc
Q 001174 489 LL--DENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMA 565 (1132)
Q Consensus 489 LL--~D~~~~~L~d~~e~~LieiL~asVrqa~ge~~~~~~~~rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~a 565 (1132)
++ .++.. .+...|-++|.-...--+.. . .+.++.+.+.++|.+-.+...+..
T Consensus 158 ll~yF~p~t-----~~~~~LrQ~L~~Ffp~y~~s--------------~------~~~Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 158 LLLYFNPST-----EDNQRLRQCLSVFFPVYASS--------------S------PENQERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHcCccc-----CCcHHHHHHHHHHHHHHHcC--------------C------HHHHHHHHHHHHHHHHHHHhCccc
Confidence 44 24321 12234555555555433210 0 135678999999999998888876
No 76
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=40.22 E-value=47 Score=29.13 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=32.3
Q ss_pred hhhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHh
Q 001174 74 ELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEA 117 (1132)
Q Consensus 74 ~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~a 117 (1132)
...+++.+ +++.+++++++...+.|..+++.+-.++..|+-+.
T Consensus 19 a~~Iw~~~-~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L 61 (68)
T PF05402_consen 19 AAFIWELL-DGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQL 61 (68)
T ss_dssp HHHHHHH---SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45688888 57789999999999999999998888888887554
No 77
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.47 E-value=1.8e+02 Score=36.42 Aligned_cols=119 Identities=22% Similarity=0.331 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHHHhhC----cc--ccccchhhhhhh----hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSY----PS--FFLQDLYLKYLG----WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~y----P~--~FL~d~YLKYlG----W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~R 360 (1132)
.|.+|..|+-.+|.=+..+ |. .++-..|++||. ....+++...+.-+|++|.++= .+..+..+..|.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-~~~~i~~l~~~l-- 486 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-HPSSIKVLEPYL-- 486 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-ChhHHHHHHHhc--
Confidence 5689999999999877644 22 233345666655 5556778888999999998773 232232222222
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhH-Hhhhc--CCChHHHHHHHHHHH
Q 001174 361 FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL-YDLLI--DDPPEIRRAIGELVY 421 (1132)
Q Consensus 361 Fk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V-~~Lvf--d~~~~Vr~AAg~fv~ 421 (1132)
.-..+....+|+.||.-+..+.+. .++.+..+ ++++. ..++.||.||.-.+.
T Consensus 487 ------~~~~~~~~~iR~~Av~Alr~~a~~---~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 487 ------EGAEPLSTFIRLAAILALRNLAKR---DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 212466788999999988877653 23444444 34443 578889988876655
No 78
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=38.42 E-value=97 Score=33.39 Aligned_cols=116 Identities=24% Similarity=0.306 Sum_probs=72.0
Q ss_pred HHHHHhhCccccccc--hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC--------CCcccHHHHHHHHHHHHhhh---
Q 001174 302 LGVWILSYPSFFLQD--LYLKYLGWTLNDKSASVRKSSVLALQNLYEVD--------DNVPTLGLFTERFSNRMIEL--- 368 (1132)
Q Consensus 302 LG~Wi~~yP~~FL~d--~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~--------~~~~~L~lFt~RFk~RlVeM--- 368 (1132)
.|.|-..+|+..+.+ .----+--.|.|+++.||..++..|..|.... +...+-..||. |-.++-.|
T Consensus 23 ~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFts-lS~tLa~~i~~ 101 (182)
T PF13251_consen 23 FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTS-LSSTLASMIME 101 (182)
T ss_pred HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCccc-HHHHHHHHHHH
Confidence 467777777773221 11233456688999999999999999987431 11122333544 44333332
Q ss_pred --------c-ccCchhHHHHHHHHHHHHHhc---CCCCC----CChhhHHhhhcCCChHHHHHHHH
Q 001174 369 --------A-DDIDVSVAVCAIGLVKQLLRH---QLLPD----DDLGPLYDLLIDDPPEIRRAIGE 418 (1132)
Q Consensus 369 --------~-~D~D~~Vav~AI~Ll~~l~~~---~~L~~----ed~~~V~~Lvfd~~~~Vr~AAg~ 418 (1132)
. ...+..+-.+.++.+..+..+ .-|.. +-+..|..++.+.++.|+.++.-
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~ 167 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALS 167 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 2 466777888888888888886 22332 22346667777777777776643
No 79
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=37.84 E-value=1.2e+02 Score=34.80 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=69.2
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM 368 (1132)
|-+|.+|..++..|| .......+--.+++.-+|.+..||..|..+|.++..... -.-++++
T Consensus 85 d~~~~vr~~a~~aLg-------~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a------------~~~l~~~ 145 (335)
T COG1413 85 DEDPRVRDAAADALG-------ELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERA------------LDPLLEA 145 (335)
T ss_pred CCCHHHHHHHHHHHH-------ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh------------hHHHHHH
Confidence 445589999999988 333333344444444449999999999999999874321 1134444
Q ss_pred cccCc------------hhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 369 ADDID------------VSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 369 ~~D~D------------~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
..|.+ ..|+..|+..+..+ | ++..+..+-.++-+....||.+|+.-+.
T Consensus 146 l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---~--~~~~~~~l~~~l~~~~~~vr~~Aa~aL~ 205 (335)
T COG1413 146 LQDEDSGSAAAALDAALLDVRAAAAEALGEL---G--DPEAIPLLIELLEDEDADVRRAAASALG 205 (335)
T ss_pred hccchhhhhhhhccchHHHHHHHHHHHHHHc---C--ChhhhHHHHHHHhCchHHHHHHHHHHHH
Confidence 44433 24566665543332 2 4555667777777888888888886554
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=35.72 E-value=3e+02 Score=32.94 Aligned_cols=131 Identities=28% Similarity=0.298 Sum_probs=95.6
Q ss_pred CChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc----c------HHHHHH
Q 001174 290 IDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP----T------LGLFTE 359 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~----~------L~lFt~ 359 (1132)
.+..-|.+|++.|..-....|+......=++.+--.+.|...+.-..++.++..+...|.... . +..||+
T Consensus 120 ~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 120 EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTD 199 (371)
T ss_pred CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhh
Confidence 677899999999999999999999988888999999999888888899999999998875432 1 222555
Q ss_pred HHHHHHhhhcccCc-hhHHHHHHHHHHHHHhc--CCC--CCC---ChhhHHhhhcCCChHHHHHHHHHHHHHH
Q 001174 360 RFSNRMIELADDID-VSVAVCAIGLVKQLLRH--QLL--PDD---DLGPLYDLLIDDPPEIRRAIGELVYDHL 424 (1132)
Q Consensus 360 RFk~RlVeM~~D~D-~~Vav~AI~Ll~~l~~~--~~L--~~e---d~~~V~~Lvfd~~~~Vr~AAg~fv~~~l 424 (1132)
= -.+ ...+.. .+.-..+..++..+++. |++ ... -+..+...+.-.++.+|+++-+.+++-+
T Consensus 200 ~-~~~---~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 200 F-HYR---KIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred h-hcc---ccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 111 122222 23455566667777775 765 333 3556666666788999999999988744
No 81
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.24 E-value=3.3e+02 Score=32.34 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=74.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc--ccccchhh-hhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc--ccHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPS--FFLQDLYL-KYLGWTLNDKSASVRKSSVLALQNLYEVDDNV--PTLGLFTERFS 362 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~--~FL~d~YL-KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~--~~L~lFt~RFk 362 (1132)
--++++=|..|+..|-.-+..+-. .|.+-.-| --+| .|.++++.+|..+...|.....|.-.. .-++.+ |.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~---~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG---AL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc---cH
Confidence 346777788888888877776643 45554443 3445 799999999999999999999764222 113444 78
Q ss_pred HHHhhhc-ccCchhHHHHHHHHHHHHHhc
Q 001174 363 NRMIELA-DDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 363 ~RlVeM~-~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
.-|+.+. .|.+.+|++.|.--+..+.++
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRN 197 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhc
Confidence 8888888 799999999999999988887
No 82
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.12 E-value=5.7e+02 Score=33.85 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccH---HHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCCh
Q 001174 216 GLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRV---ESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDP 292 (1132)
Q Consensus 216 aL~l~taLv~va~~l~~~~~~~qRQleaEk~K~~~~~r~---e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p 292 (1132)
|++.+++||++ .=.+-+..+.-+|+.+++|.....|+ |++-+-+...- +-+..+.. ..-..|..=.||-+.
T Consensus 788 aI~gv~~Lcev--y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G---el~~~y~~-~Li~tfl~gvrepd~ 861 (982)
T KOG4653|consen 788 AIRGVVSLCEV--YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG---ELVFKYKA-VLINTFLSGVREPDH 861 (982)
T ss_pred HHHHHHHHHHh--cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc---cHHHHHHH-HHHHHHHHhcCCchH
Confidence 55666788887 22334566777898888775333333 22322222111 11111111 111233444455555
Q ss_pred hHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh-c-CCCcccHHH-HHHHHHHHHh
Q 001174 293 NIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE-V-DDNVPTLGL-FTERFSNRMI 366 (1132)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~-~~~~~~L~l-Ft~RFk~RlV 366 (1132)
.-|+..+..||.-+.... +.|+-...-..+.-.--|.+.-||-+|+.-|..|.. . .+..+-++. -.+..+.-.=
T Consensus 862 ~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~ 941 (982)
T KOG4653|consen 862 EFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLS 941 (982)
T ss_pred HHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 559999999998888765 345555555666666779999999999999988864 2 233333322 3355554444
Q ss_pred hhcccCchhHHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQL 387 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l 387 (1132)
-|+.+.|..+...|-.-+..|
T Consensus 942 ~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 942 YVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHhcCchhHHHHHHHHHHHHH
Confidence 456677777766654444333
No 83
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.98 E-value=23 Score=45.90 Aligned_cols=92 Identities=25% Similarity=0.196 Sum_probs=71.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc----CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL----NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L----~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
||+...=|+. .-|.+|+ -|..|.++.+|--+.-.. -.-...+|++.++--..||+. +..+++.|...|.+
T Consensus 56 RDivTK~rAL--qDLiq~n--D~sQF~NeqFLna~avlfprLsIev~~~~rl~~~qf~s~L~~~--l~KKi~k~lk~~i~ 129 (1525)
T COG5219 56 RDIVTKCRAL--QDLIQWN--DPSQFDNEQFLNALAVLFPRLSIEVEMNPRLEGLQFDSRLYEI--LSKKIGKRLKKTIL 129 (1525)
T ss_pred hhHHHHHHHH--HHHHhcc--CHhhhcHHHHHHHHHHHhhheeeeeeeccchhhhhhHHHHHHH--HHHHHHHHHHhhhh
Confidence 6777777765 8899998 899999999986544322 123457899999999999963 33579999999999
Q ss_pred HHhhhcccCchhHHHHHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAIGLVK 385 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~ 385 (1132)
|.+=-..|.|..|.+.|-.=+.
T Consensus 130 ~~llg~~d~d~sVsv~a~~~~~ 151 (1525)
T COG5219 130 RGLLGLKDVDDTVSVEANIDTL 151 (1525)
T ss_pred HHHHhhcchhhhcccccchHHH
Confidence 9998889999999998855333
No 84
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=32.75 E-value=25 Score=34.16 Aligned_cols=27 Identities=30% Similarity=0.642 Sum_probs=22.5
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccch
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDL 317 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~ 317 (1132)
...||.-++.-|..|+..||..|.+|.
T Consensus 63 ~~~~~~~v~~~l~~Wv~~~~~df~~d~ 89 (122)
T cd06224 63 SKPIRLRVLNVLRTWVENYPYDFFDDE 89 (122)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccH
Confidence 345888999999999999999996543
No 85
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.62 E-value=44 Score=45.59 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHhhCccccc---cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001174 292 PNIRMSCIQSLGVWILSYPSFFL---QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1132)
Q Consensus 292 p~IR~~Ci~eLG~Wi~~yP~~FL---~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM 368 (1132)
.+-|...+..+|.-...+-..+. ++.|.. +-|-++|++.+||.+|++.....|-+...+.+= ..-+..+
T Consensus 273 ~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~-fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~-------~~~~~~l 344 (1266)
T KOG1525|consen 273 EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSA-FLGRFNDISVEVRMECVESIKQCLLNNPSIAKA-------STILLAL 344 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcccchHHHHH-HHHHhccCChhhhhhHHHHhHHHHhcCchhhhH-------HHHHHHH
Confidence 35677788888866555555444 233444 445699999999999999888877553222211 1122223
Q ss_pred c-ccCchhHHHHHHHHHHHHHhc---CCCCCCChhhHHhhhcCCChHHHHHHHH
Q 001174 369 A-DDIDVSVAVCAIGLVKQLLRH---QLLPDDDLGPLYDLLIDDPPEIRRAIGE 418 (1132)
Q Consensus 369 ~-~D~D~~Vav~AI~Ll~~l~~~---~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~ 418 (1132)
+ .|.|++|++..+-++...-.. -.+.+.-+..|.+.+-|....||+.|-.
T Consensus 345 ~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~ 398 (1266)
T KOG1525|consen 345 RERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMN 398 (1266)
T ss_pred HhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3 477777766544333222221 1122224567788888999999999965
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=32.50 E-value=9e+02 Score=29.11 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcC
Q 001174 270 DLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVD 348 (1132)
Q Consensus 270 ~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~ 348 (1132)
...++++.+.+-...... +.+|..|.+.|+.-+++||..=.=+..|..+...+ +......|..++..+.=+-+
T Consensus 186 ~~~~ll~~l~~~~~~~~~----~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-- 259 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSED----EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITK-- 259 (415)
T ss_pred CHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH--
Confidence 344566666655554444 89999999999999999866433335556666556 67788888888887755543
Q ss_pred CCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 349 DNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 349 ~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
-++.+-......+-++++++..| .+++..|-+.+..|...
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d 299 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSD 299 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcC
Confidence 11222233455566678888766 66777777777777765
No 87
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=30.42 E-value=1.6e+02 Score=28.74 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=64.2
Q ss_pred ccccchhh---hhhhhhcCC----CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc---ccCchhHHHHHH
Q 001174 312 FFLQDLYL---KYLGWTLND----KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA---DDIDVSVAVCAI 381 (1132)
Q Consensus 312 ~FL~d~YL---KYlGW~L~D----k~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~---~D~D~~Vav~AI 381 (1132)
.||++.+| -+|.-.|+| +...-|..++++|..+.+ ..+..+..|++.|..+- .+.+ +++..|+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~~pQI~a~L~sal~~~-~l~~~al 75 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSARPQIMACLQSALEIP-ELREEAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHhCCh-hhHHHHH
Confidence 46666554 566667888 777889999999999974 35567777888887766 3555 8999999
Q ss_pred HHHHHHHhcCCCCCCChhhHHhhhc
Q 001174 382 GLVKQLLRHQLLPDDDLGPLYDLLI 406 (1132)
Q Consensus 382 ~Ll~~l~~~~~L~~ed~~~V~~Lvf 406 (1132)
+....+.+. |+++|+.++...++
T Consensus 76 ~~W~~fi~~--L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 76 SCWNCFIKT--LDEEDLGPLLDQIF 98 (107)
T ss_pred HHHHHHHHH--CCHHHHHHHHHHHH
Confidence 999999886 46677776654443
No 88
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.22 E-value=6.2e+02 Score=30.11 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=91.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccc---cccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH-H
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSF---FLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF-S 362 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~---FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF-k 362 (1132)
-+.++.+|.....-||.-....|.. +++...|+-|--.| +|...+||.++|-|+..|.++. .+....|..=- -
T Consensus 134 ~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 134 ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNGY 211 (342)
T ss_pred cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCCH
Confidence 5789999999999999999999974 66777776655444 6788899999999999999864 34444442210 0
Q ss_pred HHHhhhcc--cCchhHHHHHHHHHHHHHhcCCCCCCCh------hhHHhhhcCCChHHHHHHHHHHHHHH
Q 001174 363 NRMIELAD--DIDVSVAVCAIGLVKQLLRHQLLPDDDL------GPLYDLLIDDPPEIRRAIGELVYDHL 424 (1132)
Q Consensus 363 ~RlVeM~~--D~D~~Vav~AI~Ll~~l~~~~~L~~ed~------~~V~~Lvfd~~~~Vr~AAg~fv~~~l 424 (1132)
.-|+..-. +.+....+.|+-|+..|.+...-..++. ..+-.++..-+-.++.+|-..+...+
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 12333333 4788889999999999998743222211 12334555666777777766655543
No 89
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=29.86 E-value=9.4e+02 Score=27.98 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=69.9
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhh---hhhh--hhcC----CC---------ChhHHHHHHHHHHhhhhcCCC
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYL---KYLG--WTLN----DK---------SASVRKSSVLALQNLYEVDDN 350 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YL---KYlG--W~L~----Dk---------~~~VR~~~L~aL~~Ly~~~~~ 350 (1132)
...+.+|+.|+..||.-- |=..-=.+.+. .-+. |.+. |. ++.|-..+|.+-.=|...-+
T Consensus 142 s~~~~~R~~~~~aLai~~--fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~- 218 (309)
T PF05004_consen 142 SASPKARAACLEALAICT--FVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLP- 218 (309)
T ss_pred ccchHHHHHHHHHHHHHH--HhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCC-
Confidence 445789999999999531 11111112333 5666 6543 22 35799999998888875322
Q ss_pred cccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCC
Q 001174 351 VPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQL 392 (1132)
Q Consensus 351 ~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~ 392 (1132)
...+..+.++.-++|+++..-.|.+||+.|=..+..|++.+.
T Consensus 219 ~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 219 DSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 134667888888999999977799999999999888888754
No 90
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=29.70 E-value=23 Score=22.22 Aligned_cols=10 Identities=70% Similarity=1.301 Sum_probs=3.4
Q ss_pred cccCCCCCcc
Q 001174 1042 RRRGRPRKKR 1051 (1132)
Q Consensus 1042 ~~r~r~~~~~ 1051 (1132)
|+||||+|..
T Consensus 2 r~RGRP~k~~ 11 (13)
T PF02178_consen 2 RKRGRPRKNA 11 (13)
T ss_dssp --SS--TT--
T ss_pred CcCCCCcccc
Confidence 6789988753
No 91
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=29.60 E-value=29 Score=25.74 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=11.1
Q ss_pred ccccCCCCCcccccc
Q 001174 1041 VRRRGRPRKKRNIEG 1055 (1132)
Q Consensus 1041 ~~~r~r~~~~~~~~~ 1055 (1132)
.|+||||||......
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 378999998876543
No 92
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.45 E-value=2.3e+02 Score=33.14 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHHHhhCcccccc--c----hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC--cccHHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQ--D----LYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN--VPTLGLFTERFS 362 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~--d----~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~--~~~L~lFt~RFk 362 (1132)
.|++|.....-|..-+..+|..|++ + ..+..+-|++...+.+|-..||++|..|..+-.. .+....|.+.|-
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6999999999999888888888764 2 5678889999999999999999999999865322 234555666665
Q ss_pred HHHh----hhcccCchh
Q 001174 363 NRMI----ELADDIDVS 375 (1132)
Q Consensus 363 ~RlV----eM~~D~D~~ 375 (1132)
-.++ .+..|.+..
T Consensus 213 ~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHK 229 (319)
T ss_dssp HHHHHHHHHHHHSTT-G
T ss_pred HHHHHHHHHHHHCcccH
Confidence 4444 344577754
No 93
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=28.28 E-value=95 Score=41.56 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHhHHHHHHHhh---cccCCcccc-cchHHHHHHHHhhcc
Q 001174 891 EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLS---GTYVGAARN-KHRSDILKTVKEGID 960 (1132)
Q Consensus 891 ~~~a~~l~~sL~~ly~~~~~~~~~~~~~~~~s~~f~~ikeLArRfa---ltf~G~d~~-K~R~ai~~lHk~GI~ 960 (1132)
+.--+.++.+.-|+|.-+..+...+......+..|-.+.-=.+||= ++| ...++ -.-++|-.=+|+||.
T Consensus 1525 ~adr~Rf~qat~qVFhaL~iekaeSsk~kekna~f~amI~k~~qffQaL~~f-AV~eLaiaAdaifePVRdGi~ 1597 (3015)
T KOG0943|consen 1525 IADRMRFLQATAQVFHALSIEKAESSKKKEKNAFFPAMIGKCKQFFQALLPF-AVEELAIAADAIFEPVRDGIA 1597 (3015)
T ss_pred HHHHHHHHHHHHHHHhheeeehhhhhhhhhcccccHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhhhhhhccc
Confidence 4455778888889997665444333333333456666666677773 234 32222 234566677888884
No 94
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=28.26 E-value=3.1e+02 Score=39.84 Aligned_cols=130 Identities=19% Similarity=0.153 Sum_probs=96.3
Q ss_pred ChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 291 DPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.++|+......|+.-....|+ ...+..=+--+-.+|+..+.+||.++-.+|..|+..-....+...-..---+-|++
T Consensus 622 s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~ 701 (2102)
T PLN03200 622 KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK 701 (2102)
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH
Confidence 456666666666655544444 45566667788889999999999999999999996432222222222223445999
Q ss_pred hcccCchhHHHHHHHHHHHHHhcC-----CCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQ-----LLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~-----~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1132)
|..+.|.+|...|...|..|.+.+ ++...-+..+.+++-+.++..|+-|+.-+
T Consensus 702 LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 702 LAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred HHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 999999999999999999999974 55666688899999999999999888654
No 95
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.93 E-value=3.8e+02 Score=35.08 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=99.0
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
-+|-.|-+|...-.+|-.--..-|+..- .-+-.++-+|+|+++.|=-+++-+-..+|- .++++--.-|| |+.
T Consensus 152 ~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCP-----erldLIHknyr-klC 223 (968)
T KOG1060|consen 152 VTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCP-----ERLDLIHKNYR-KLC 223 (968)
T ss_pred hcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhch-----hHHHHhhHHHH-HHH
Confidence 4799999999888887754444455543 678899999999999999999999999884 45666666666 888
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCC------------------------------Chh----hHHhhhcCCChHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRHQLLPDD------------------------------DLG----PLYDLLIDDPPEI 412 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~~~L~~e------------------------------d~~----~V~~Lvfd~~~~V 412 (1132)
.+..|+|.==.+-.|+.|+.--++++.+|. |.+ ..-.|+|+.++.|
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV 303 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV 303 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence 888899988899999999999999887761 221 2336788888888
Q ss_pred HHHHHHHHH
Q 001174 413 RRAIGELVY 421 (1132)
Q Consensus 413 r~AAg~fv~ 421 (1132)
--|+++..|
T Consensus 304 VmA~aql~y 312 (968)
T KOG1060|consen 304 VMAVAQLFY 312 (968)
T ss_pred HHHHHhHHH
Confidence 888887765
No 96
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=27.24 E-value=1.2e+02 Score=38.62 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=49.7
Q ss_pred hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHh
Q 001174 319 LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLR 389 (1132)
Q Consensus 319 LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l-Ft~RFk~RlVeM~-~D~D~~Vav~AI~Ll~~l~~ 389 (1132)
.-.+---|+|.+|-+|-++|+.+.++|.-+...++=++ |+ |+|--+ .|.-.-||-.||+|+..|+-
T Consensus 348 v~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~-----~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 348 VGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVI-----RLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHH-----HHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 34455668999999999999999999965543333332 33 344445 79999999999999988765
No 97
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=27.07 E-value=1.8e+02 Score=38.29 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=94.1
Q ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCC---
Q 001174 252 PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLND--- 328 (1132)
Q Consensus 252 ~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~D--- 328 (1132)
.|.|+|+.=+.-+++...++..-...+....--+|-.|+.-.+=+.-...|+.--...+.-|.. |-+-++=.|.|
T Consensus 269 ~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 269 DRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YAKNVFPSLLDRLK 346 (815)
T ss_pred HHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HHHhhcchHHHHhh
Confidence 4666666555555554433333334444455677888887776655555555544555555544 44444544544
Q ss_pred -CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhH---
Q 001174 329 -KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPL--- 401 (1132)
Q Consensus 329 -k~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~-~--~L~~ed~~~V--- 401 (1132)
+.+.+|-+.++++....+ ...+. +.-+-|+++..++.+.++.++-.++...++. + ..+.+.++.+
T Consensus 347 ekk~~l~d~l~~~~d~~~n----s~~l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~ 418 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILN----STPLS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPH 418 (815)
T ss_pred hccHHHHHHHHHHHHHHHh----cccHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHH
Confidence 555555555555554443 11221 1223567778899999999998888887775 3 2334444544
Q ss_pred -HhhhcCCChHHHHHHHHH
Q 001174 402 -YDLLIDDPPEIRRAIGEL 419 (1132)
Q Consensus 402 -~~Lvfd~~~~Vr~AAg~f 419 (1132)
+..+=|....||.||-+-
T Consensus 419 ~~~~~~D~~~~VR~Aa~e~ 437 (815)
T KOG1820|consen 419 LIKHINDTDKDVRKAALEA 437 (815)
T ss_pred HhhhccCCcHHHHHHHHHH
Confidence 444559999999999764
No 98
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=26.89 E-value=1.1e+02 Score=30.96 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=41.4
Q ss_pred ChhHHHHHHHHHHHHHhhCccc--cccc-hhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001174 291 DPNIRMSCIQSLGVWILSYPSF--FLQD-LYLKYLGWTLNDKSASVRKSSVLALQNLYE 346 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~--FL~d-~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1132)
+|..=+++..-||..++.||.- ++++ .+=--+--+++.++++||-+||+++++|-.
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7788888888889999888873 4433 222345567889999999999999999864
No 99
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=25.96 E-value=2.1e+02 Score=32.53 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=60.2
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhhc-C-C--CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 001174 320 KYLGWTLNDKSASVRKSSVLALQNLYEV-D-D--NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPD 395 (1132)
Q Consensus 320 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~-~--~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ 395 (1132)
+-+|--|.+.++.+|.+++.-|..+.+. + + .......+++-|.+|+ .|......|++-+..|.+..-++.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl------~D~~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL------DDHACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh------ccHhhHHHHHHHHHHHHhCcCCCh
Confidence 3478889999999999999999988754 2 1 1234566666666666 466777777888888888877777
Q ss_pred CChhhHHhhhcC
Q 001174 396 DDLGPLYDLLID 407 (1132)
Q Consensus 396 ed~~~V~~Lvfd 407 (1132)
+....+.+-+|.
T Consensus 76 ~~~~~i~~~l~~ 87 (262)
T PF14500_consen 76 ESAVKILRSLFQ 87 (262)
T ss_pred hhHHHHHHHHHH
Confidence 777777777764
No 100
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.44 E-value=1.7e+02 Score=34.18 Aligned_cols=97 Identities=19% Similarity=0.118 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchh--hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLY--LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y--LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
|-.|.+|.+.|+.+-...-.--..|+.++| +|-+.-++.|+.+ -..+..+|-++..++....+|-.- |-.+++
T Consensus 14 ~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~---~~k~l~ 88 (353)
T KOG2973|consen 14 SLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD---LLKVLM 88 (353)
T ss_pred cCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH---HHHHHH
Confidence 678999999998887776664456777777 7888899999988 556778999999887666554332 778999
Q ss_pred hhcccCchhHHHHHHHHHHHHHhc
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
.|+.|-....+-....||..+.+.
T Consensus 89 ~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 89 DMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHhcCcccchHHHHHHHHHHhccC
Confidence 999999899999888888888775
No 101
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=25.43 E-value=60 Score=40.85 Aligned_cols=116 Identities=20% Similarity=0.357 Sum_probs=68.3
Q ss_pred ChhHHHHHHHHHHHHHhhCccc------------cccchhhhhh----hhhcCCCChhHHHHHHHHHHhhhhcCCCcccH
Q 001174 291 DPNIRMSCIQSLGVWILSYPSF------------FLQDLYLKYL----GWTLNDKSASVRKSSVLALQNLYEVDDNVPTL 354 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~------------FL~d~YLKYl----GW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L 354 (1132)
.|.+|..|+-.+|.=+..+=.. .+-..|.+|| +.+....+...+..+|++|.++= .+..++
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-~~~~i~-- 524 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-HPESIP-- 524 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--GGGHH--
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-CchhhH--
Confidence 3578888888888766655222 3444555554 45556778899999999999883 222222
Q ss_pred HHHHHHHHHHHhhhcc---cCchhHHHHHHHHHHHHHhcCCCCCCChhhH-Hhhhc--CCChHHHHHHHHHHH
Q 001174 355 GLFTERFSNRMIELAD---DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL-YDLLI--DDPPEIRRAIGELVY 421 (1132)
Q Consensus 355 ~lFt~RFk~RlVeM~~---D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V-~~Lvf--d~~~~Vr~AAg~fv~ 421 (1132)
.+...+. +....+|+.||.-+..+... .++.+..+ ++++. .+++.||.||.-.+.
T Consensus 525 ---------~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~---~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 525 ---------VLLPYIEGKEEVPHFIRVAAIQALRRLAKH---CPEKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp ---------HHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred ---------HHHhHhhhccccchHHHHHHHHHHHHHhhc---CcHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 3333442 56889999999977655333 23333333 34444 467889999966554
No 102
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=24.71 E-value=63 Score=33.65 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=73.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccH--HHH-HHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTL--GLF-TERFSNR 364 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L--~lF-t~RFk~R 364 (1132)
+-+-+++|..+.-.+..-+..+++.| .+...+|+.-.+.+...+....++.+|..||-.+ +.+ ..| ++.|.+-
T Consensus 15 ~~~~~~~r~~a~v~l~k~l~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~---~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 15 LRQPEEVRSHALVILSKLLDAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGP---PDVGSELFLSEGFLES 90 (157)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT---HHHHHHHCCTTTHHHH
T ss_pred cCCCHhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC---HHHHHHHHhhhhHHHH
Confidence 67788999888888888888888887 4456688888888888889999999999999543 222 223 5678888
Q ss_pred Hhhhcc--cCchhHHHHHHHHHHHHH
Q 001174 365 MIELAD--DIDVSVAVCAIGLVKQLL 388 (1132)
Q Consensus 365 lVeM~~--D~D~~Vav~AI~Ll~~l~ 388 (1132)
|+.|+. -.|..+...+++++..-.
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHHT
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 888886 778888888888766543
No 103
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.32 E-value=2.4e+02 Score=36.69 Aligned_cols=51 Identities=31% Similarity=0.405 Sum_probs=43.6
Q ss_pred ccCchhHHHHHHHHHHHHHhc-C-------CCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001174 370 DDIDVSVAVCAIGLVKQLLRH-Q-------LLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1132)
Q Consensus 370 ~D~D~~Vav~AI~Ll~~l~~~-~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1132)
--.|..||..||+|++.++++ | +-.|.-+-.+..++-|++.+||.+|--|+
T Consensus 132 e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 132 EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 467999999999999999997 2 33577788899999999999999998664
No 104
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=24.19 E-value=1.5e+02 Score=37.17 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=65.0
Q ss_pred CChhHHHHHHHHHHHHHhh--Ccccccc---------------chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc
Q 001174 290 IDPNIRMSCIQSLGVWILS--YPSFFLQ---------------DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP 352 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~--yP~~FL~---------------d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~ 352 (1132)
-+|+-|--.++.|+.+|.- ||..-+. ..|.||+.--+-=.++-||..++.+|.+.--+.+.
T Consensus 443 ~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-- 520 (898)
T COG5240 443 NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD-- 520 (898)
T ss_pred hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--
Confidence 4677777778888888753 4554332 46888888777778999999999999887322211
Q ss_pred cHHHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHh
Q 001174 353 TLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLR 389 (1132)
Q Consensus 353 ~L~lFt~RFk~RlVeM~-~D~D~~Vav~AI~Ll~~l~~ 389 (1132)
.|..+=-..++.-| .|.|.+||-.|-=+|..|..
T Consensus 521 ---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 521 ---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 12222222334445 79999999999888877763
No 105
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=23.40 E-value=4.6e+02 Score=28.32 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcceEecc-----------ccCCChhHHHHHHHHHHHHHhhCccccccchh--------------------
Q 001174 270 DLEDMMRKIFTGLFVHR-----------YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLY-------------------- 318 (1132)
Q Consensus 270 ~i~~~l~~iF~~VFvhR-----------yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-------------------- 318 (1132)
.+-.+|..+|=.....+ -+|-+|.+|+.-+..|..-+...-.+|.....
T Consensus 21 ~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~ 100 (182)
T PF13251_consen 21 SLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIM 100 (182)
T ss_pred eeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Confidence 46777777776551111 36899999999999999877765444433221
Q ss_pred --hhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCcccH-HHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 319 --LKYLGWTLND-KSASVRKSSVLALQNLYEVDDNVPTL-GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 319 --LKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~~~L-~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
=+.|.|.|.. +++.+=..++|.|.-|-.+--. .+| ..+..++-..+-......|.+|++.+.-++..+....
T Consensus 101 ~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY-~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 101 ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY-HRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh-hhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 2457777765 4778888888888888655322 122 1234445555555555699999999999999888764
No 106
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.17 E-value=3.4e+02 Score=25.38 Aligned_cols=51 Identities=10% Similarity=0.290 Sum_probs=36.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHcccCC----CccHHHHHHHHHHHHhhHHHHHHHHH
Q 001174 226 VAKMLGAQRETTQRQLNAEKKKRVE----GPRVESLNKRLSMTHKNITDLEDMMR 276 (1132)
Q Consensus 226 va~~l~~~~~~~qRQleaEk~K~~~----~~r~e~l~~~~~e~~~~~~~i~~~l~ 276 (1132)
-++.+....+..|.|++.-+.+-.. ++|++++..++..++.+.+.|.++++
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456778888889999776654332 35677777777777777777777776
No 107
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.96 E-value=1.5e+02 Score=38.17 Aligned_cols=63 Identities=27% Similarity=0.310 Sum_probs=49.2
Q ss_pred hhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 322 LGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 322 lGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
+.-+|+-..+=||.+++..|.++|-. .-..|+.=.- |++|=.-|.|++|...|+++++.|-+.
T Consensus 149 v~tLL~sskpYvRKkAIl~lykvFLk--YPeAlr~~Fp----rL~EkLeDpDp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 149 VFTLLNSSKPYVRKKAILLLYKVFLK--YPEALRPCFP----RLVEKLEDPDPSVVSAAVSVICELARK 211 (877)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHh--hhHhHhhhHH----HHHHhccCCCchHHHHHHHHHHHHHhh
Confidence 34568889999999999999999853 1123444333 666667899999999999999999986
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=22.00 E-value=2.5e+02 Score=36.73 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=63.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 285 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 285 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
..-.|..-.+|..-++.+-.=....-..|+++.|-.++---|.|++.++|..|.+.|..|-..- + ..--+..--++
T Consensus 486 el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~---G-~~w~~~~~i~k 561 (759)
T KOG0211|consen 486 ELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF---G-SEWARLEEIPK 561 (759)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh---C-cchhHHHhhHH
Confidence 3445556666666666655554444466666666666544466777777766666666553210 0 11112223334
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHh---cCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLR---HQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~---~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1132)
++.|..+..+-+|.....-+..|.. ..+-..+-...++.++=|..|.||--|+.++
T Consensus 562 ~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 562 LLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred HHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 4555543344444333333333332 2222222222455555555555555555554
No 109
>PF05734 DUF832: Herpesvirus protein of unknown function (DUF832); InterPro: IPR008550 This entry contains BRRF2 from Epstein-Barr virus. This protein family is restricted to the gammaherpesvirus's; it's function is not known. The protein is phosphorylated and is associated with the viral tegument [].
Probab=21.55 E-value=9e+02 Score=27.18 Aligned_cols=98 Identities=8% Similarity=0.109 Sum_probs=44.7
Q ss_pred HHhHHHHHHHhcCccchhHHHhhhhhcchhhhhcccchhHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHhhcchh
Q 001174 554 KNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDA---FFKHGEKEALRSCVKAIKFCSAESQG 630 (1132)
Q Consensus 554 ~~LP~LL~Ky~aD~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~---f~kHsd~~VL~~~a~al~~L~~~~~~ 630 (1132)
...+.++.-|...+.....+=-+-+.|+ ..+.-..+.+|+-.-+.+ --.-+..++++.+..+. +++-.-+.
T Consensus 16 ~~w~~i~~~F~~~~~v~~~~~~l~r~f~-----~~~~~~~lasL~iL~~~l~~~~~~~~k~~li~~l~~~~-~~a~~ly~ 89 (228)
T PF05734_consen 16 EEWRNILSNFSTHGNVSATLRSLRRIFK-----GENHPGFLASLVILKNKLPTSHKTNEKENLIEVLQQVR-FLAQYLYK 89 (228)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhc-----CCCCcchhhHHHHHHHHcCChhhhhhhhcHHHHHHHHH-HHHHHHHH
Confidence 5566666677776666666666666665 111112333333322211 11111223333333322 22221111
Q ss_pred hH-HHHHhhhHhHHHHHHHHHHHHHHHH
Q 001174 631 EL-QDSARKNLKDVEDKLIAKLKSAIKA 657 (1132)
Q Consensus 631 ~l-~~~a~~~l~~L~d~lv~~l~~~~~~ 657 (1132)
.+ ......-..+++.+.+++|...+..
T Consensus 90 ~~~~~e~~~~~e~mf~~ck~rL~llle~ 117 (228)
T PF05734_consen 90 HIFPQETPSDPEEMFRDCKTRLALLLED 117 (228)
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11 0111223667888889988888754
No 110
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.17 E-value=3.6e+02 Score=34.59 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=75.3
Q ss_pred hCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHH
Q 001174 308 SYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQL 387 (1132)
Q Consensus 308 ~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l 387 (1132)
+-|-.++=+.+|.|+-- .+|..|..++.-+....=.. ...+-.=.++|-.-+-.++.|.|++||-+-.+-+..|
T Consensus 169 ~rpl~~mipkfl~f~~h----~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~L 242 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKH----PSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFL 242 (885)
T ss_pred cCchHHhHHHHHHHHhC----CChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 56777777888888765 49999999888776554211 2334455666777888999999999999999988888
Q ss_pred Hhc--CCCCCCChhhHH----hhhcCCChHHHHHHHHHHH
Q 001174 388 LRH--QLLPDDDLGPLY----DLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 388 ~~~--~~L~~ed~~~V~----~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
++. +-|-+ ....|. +..-|.+..|+-.|-+|..
T Consensus 243 levr~dkl~p-hl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 243 LEVRPDKLVP-HLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred HHhcHHhccc-chHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 875 22221 233443 3344888889999999943
No 111
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.90 E-value=1.8e+03 Score=28.14 Aligned_cols=302 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhc-CCCCCCChhhHHhhhcCCChHHHHHHHHHHHHHHHHhhhcCcccCCCCCCC
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRH-QLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDN 441 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~-~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~~~~~ 441 (1132)
+.++.+|-|-|..||++||+-|-.+.+. .-+-..=.|-+.+|+-.+++.-..++=.-+...+-.+
T Consensus 62 ~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------------- 127 (556)
T PF05918_consen 62 NAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------------- 127 (556)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC--------------
Q ss_pred CchhhHHhHHHHHHHhhcCCCchhhHHHHhhccccccCCChHHHHHHHcCCCCCCCCCchhhHHHHHHHHHHHHHHhccC
Q 001174 442 DSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGER 521 (1132)
Q Consensus 442 ~~~~~~l~~l~~~l~~f~~~~~~~~ylVDsLwd~~~~lkDWe~m~~lLL~D~~~~~L~d~~e~~LieiL~asVrqa~ge~ 521 (1132)
....+..+..-+..-... ++.-..-+|..|..-|+..-.+.
T Consensus 128 --~k~tL~~lf~~i~~~~~~-------------------------------------de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSG-------------------------------------DEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp --HHHHHHHHHHHHH---HS--------------------------------------HHHHHHHHHHHHHHGGGS-TTT
T ss_pred --cHHHHHHHHHHHHhcccC-------------------------------------chHHHHHHHHHHHHHHhhCcHHH
Q ss_pred CCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhhcccchhHHHHHHHHH
Q 001174 522 IVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLV 601 (1132)
Q Consensus 522 ~~~~~~~rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~aD~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i 601 (1132)
..|. +++-+.++..+=.+|.-..+ +-...++.|-.. |.+|....-.+....|++.|
T Consensus 169 ~~p~--------------------~E~e~~i~~~ikkvL~DVTa--eEF~l~m~lL~~--lk~~~~~~t~~g~qeLv~ii 224 (556)
T PF05918_consen 169 LTPQ--------------------KEMEEFIVDEIKKVLQDVTA--EEFELFMSLLKS--LKIYGGKQTIEGRQELVDII 224 (556)
T ss_dssp S-----------------------HHHHHHHHHHHHHHCTT--H--HHHHHHHHHHHT--SGG---GSSHHHHHHHHHHH
T ss_pred hhch--------------------HHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHh--CccccccCChHHHHHHHHHH
Q ss_pred HHHH-----HhcCcHHHHHHHHHHHHH---HhhcchhhHHHHHhhhHhHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Q 001174 602 NDAF-----FKHGEKEALRSCVKAIKF---CSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKR 673 (1132)
Q Consensus 602 ~~~f-----~kHsd~~VL~~~a~al~~---L~~~~~~~l~~~a~~~l~~L~d~lv~~l~~~~~~~~~~~~~~~ll~~L~R 673 (1132)
-++. +..+|++.++....-+.. +++.+..+- .++.=+..++-..+.++ .++.-.++|..|-=
T Consensus 225 ~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Ss---------kfv~y~~~kvlP~l~~l-~e~~kl~lLk~lAE 294 (556)
T PF05918_consen 225 EEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSS---------KFVNYMCEKVLPKLSDL-PEDRKLDLLKLLAE 294 (556)
T ss_dssp HHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--H---------HHHHHHHHHTCCCTT------HHHHHHHHHHH
T ss_pred HHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChH---------HHHHHHHHHhcCChhhC-ChHHHHHHHHHHHH
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHHHhhcccccccc-------------------cCc
Q 001174 674 LYELQLSKAVPIESLYEDLVMILH---TFRNLDNEVVSFLLLNLYLYLAWSLHSIINA-------------------ETV 731 (1132)
Q Consensus 674 l~~l~~~~~l~~~~l~~~l~~ll~---~~~~l~~e~v~~al~~~~~~l~W~l~~l~~~-------------------~~~ 731 (1132)
++.+....+ ...+.+.++.+|. ....-++++=-..+.|+.|.|. .|.+-.-+ +.-
T Consensus 295 ~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh-~La~k~p~~~~~lCgyk~vtgQpsd~~~~~ 371 (556)
T PF05918_consen 295 LSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFH-QLARKSPNSLNFLCGYKIVTGQPSDRYGED 371 (556)
T ss_dssp HHTT----T--HHHHHHHHHHHHHTTS----------HHHHHHHHHHHH-HHHTT-THHHH-------------------
T ss_pred HcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHH-HHhhhCcchhhhHhhhcccccccccccccc
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 001174 732 SEASLASLLLKRNTLFEELEYFL 754 (1132)
Q Consensus 732 ~~~~~~~L~~~r~~f~~~l~~~L 754 (1132)
..+.....+.+..-|.+.++.|+
T Consensus 372 ~~~~~kdf~~RL~yl~~~~q~yi 394 (556)
T PF05918_consen 372 DAEKLKDFRERLQYLARGTQAYI 394 (556)
T ss_dssp --TTTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
No 112
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=20.24 E-value=4.5e+02 Score=34.51 Aligned_cols=133 Identities=21% Similarity=0.208 Sum_probs=100.3
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
-+=..|+.|..|...-+-+|.-....|.....+.++--+-=++.|..-.||+.++.++..+.+.=+--. .-...|-+
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~ 319 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTE 319 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhH
Confidence 344679999999999999999999999999999999999999999999999999998887754211110 22333455
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhHHhhhcCCChHHHHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLYDLLIDDPPEIRRAIGEL 419 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~-~--~L~~ed~~~V~~Lvfd~~~~Vr~AAg~f 419 (1132)
-+++...|....|+-........+... | ....+-..++..++=|..-.+|.|+|.=
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKK 378 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcc
Confidence 778888999999999998888888775 2 2233334455556667777777777754
Done!