Query 001174
Match_columns 1132
No_of_seqs 218 out of 311
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltm_A Alpha-REP4; protein eng 96.6 0.012 3.9E-07 60.7 11.7 110 288-422 60-169 (211)
2 3ltj_A Alpharep-4; protein eng 96.5 0.017 5.8E-07 59.0 12.0 110 288-422 55-164 (201)
3 4fdd_A Transportin-1; heat rep 96.4 0.99 3.4E-05 56.4 30.0 103 286-390 182-286 (852)
4 1b3u_A Protein (protein phosph 96.4 0.011 3.9E-07 69.5 11.2 131 287-421 411-544 (588)
5 3ltm_A Alpha-REP4; protein eng 96.3 0.017 5.8E-07 59.4 10.8 111 287-422 28-138 (211)
6 1oyz_A Hypothetical protein YI 96.2 0.021 7.2E-07 61.4 11.4 117 288-421 101-217 (280)
7 3ltj_A Alpharep-4; protein eng 96.2 0.017 5.9E-07 58.9 10.2 115 283-422 19-133 (201)
8 1b3u_A Protein (protein phosph 96.2 0.0071 2.4E-07 71.3 8.1 131 288-422 174-307 (588)
9 2qk2_A LP04448P; mini spindles 95.8 0.048 1.6E-06 57.7 11.8 134 285-422 22-159 (242)
10 4db6_A Armadillo repeat protei 95.7 0.04 1.4E-06 56.3 10.2 131 289-421 65-205 (210)
11 4hxt_A De novo protein OR329; 95.5 0.033 1.1E-06 58.0 8.7 132 289-422 55-196 (252)
12 2qk2_A LP04448P; mini spindles 95.4 0.062 2.1E-06 56.8 10.8 103 284-390 104-206 (242)
13 1oyz_A Hypothetical protein YI 95.2 0.066 2.2E-06 57.5 10.2 120 288-421 64-184 (280)
14 4db8_A Armadillo-repeat protei 95.1 0.21 7E-06 52.3 13.5 134 288-422 64-206 (252)
15 4hxt_A De novo protein OR329; 95.0 0.082 2.8E-06 54.9 10.2 133 288-422 12-154 (252)
16 4db6_A Armadillo repeat protei 95.0 0.081 2.8E-06 54.0 9.6 134 287-422 21-164 (210)
17 1te4_A Conserved protein MTH18 94.8 0.0072 2.5E-07 58.2 1.3 112 282-419 16-127 (131)
18 4db8_A Armadillo-repeat protei 94.7 0.058 2E-06 56.6 8.1 131 289-421 107-247 (252)
19 3gs3_A Symplekin, LD45768P; he 94.5 0.37 1.3E-05 52.7 13.8 130 252-389 31-173 (257)
20 2of3_A ZYG-9; multifunctional 94.3 2.2 7.5E-05 46.8 19.5 56 290-347 179-237 (266)
21 2vgl_B AP-2 complex subunit be 94.2 0.18 6.1E-06 60.9 11.8 96 283-391 91-191 (591)
22 3b2a_A TON_1937, putative unch 94.1 0.16 5.4E-06 54.8 9.5 104 315-420 31-139 (265)
23 1te4_A Conserved protein MTH18 94.0 0.0053 1.8E-07 59.2 -1.7 99 306-422 1-99 (131)
24 4ffb_C Protein STU2; tubulin f 93.1 0.39 1.3E-05 52.1 10.8 101 287-390 112-213 (278)
25 4fdd_A Transportin-1; heat rep 92.8 0.26 8.8E-06 61.8 10.1 142 273-421 215-384 (852)
26 2jdq_A Importin alpha-1 subuni 92.5 0.3 1E-05 55.4 9.3 133 288-422 244-387 (450)
27 1u6g_C TIP120 protein, CAND1; 92.5 0.42 1.4E-05 62.4 11.8 136 285-421 441-594 (1230)
28 2vgl_B AP-2 complex subunit be 92.4 0.23 8E-06 59.9 8.8 131 288-422 131-265 (591)
29 2jdq_A Importin alpha-1 subuni 92.3 0.46 1.6E-05 53.9 10.6 133 288-421 117-259 (450)
30 3o2t_A Symplekin; heat repeat, 91.9 0.97 3.3E-05 52.1 12.6 129 252-388 41-182 (386)
31 1ibr_B P95, importin beta-1 su 91.9 1.3 4.4E-05 50.1 13.6 130 291-422 143-285 (462)
32 1wa5_B Importin alpha subunit; 91.8 0.56 1.9E-05 55.3 10.8 131 290-421 185-324 (530)
33 2db0_A 253AA long hypothetical 91.5 0.66 2.3E-05 48.4 9.4 111 267-390 101-211 (253)
34 2qk1_A Protein STU2; STU2P, XM 91.3 0.89 3E-05 48.9 10.8 107 284-390 110-221 (249)
35 1qgr_A Protein (importin beta 90.9 37 0.0013 41.8 30.7 131 289-421 339-475 (876)
36 2bpt_A Importin beta-1 subunit 90.8 37 0.0013 41.6 42.8 101 288-390 189-296 (861)
37 2qk1_A Protein STU2; STU2P, XM 90.7 0.88 3E-05 48.9 10.1 139 283-423 21-173 (249)
38 1wa5_B Importin alpha subunit; 90.7 0.36 1.2E-05 56.9 7.6 139 284-422 347-507 (530)
39 1ibr_B P95, importin beta-1 su 90.4 1.2 4.1E-05 50.4 11.4 133 287-421 226-391 (462)
40 4ffb_C Protein STU2; tubulin f 89.6 3 0.0001 45.0 13.3 139 286-424 17-167 (278)
41 1xqr_A HSPBP1 protein; armadil 89.6 1.1 3.7E-05 49.7 9.9 133 288-422 92-235 (296)
42 3tjz_B Coatomer subunit gamma; 89.0 1.1 3.6E-05 51.3 9.4 95 287-391 113-207 (355)
43 4b8j_A Importin subunit alpha- 88.9 1 3.5E-05 52.8 9.6 133 288-422 170-312 (528)
44 2z6g_A B-catenin; FULL-length, 88.8 14 0.00047 46.2 20.1 134 283-422 120-260 (780)
45 2bpt_A Importin beta-1 subunit 87.6 4.3 0.00015 50.0 14.4 129 291-421 344-478 (861)
46 4b8j_A Importin subunit alpha- 87.2 2.7 9.2E-05 49.2 11.7 133 288-422 213-355 (528)
47 1qgr_A Protein (importin beta 86.8 2.4 8.1E-05 52.5 11.5 132 288-421 227-391 (876)
48 1lrv_A LRV, leucine-rich repea 86.4 0.61 2.1E-05 50.5 5.1 89 286-420 130-218 (244)
49 1w63_A Adapter-related protein 85.3 0.74 2.5E-05 56.0 5.7 92 288-390 117-209 (618)
50 2vgl_A Adaptor protein complex 83.6 1.4 4.6E-05 53.9 7.0 95 288-391 121-218 (621)
51 1xqr_A HSPBP1 protein; armadil 83.1 2.8 9.7E-05 46.4 8.7 100 289-390 136-239 (296)
52 3tpo_A Importin subunit alpha- 82.1 5 0.00017 47.4 11.0 135 288-423 303-447 (529)
53 3ul1_B Importin subunit alpha- 82.0 4.3 0.00015 47.8 10.3 135 288-423 284-428 (510)
54 3ul1_B Importin subunit alpha- 81.2 3.7 0.00013 48.4 9.4 144 280-425 318-477 (510)
55 1u6g_C TIP120 protein, CAND1; 81.1 3.6 0.00012 53.7 10.0 128 288-422 941-1091(1230)
56 3tpo_A Importin subunit alpha- 80.6 4.4 0.00015 47.8 9.8 143 282-426 339-497 (529)
57 1jdh_A Beta-catenin; beta-cate 80.5 2.6 8.8E-05 48.8 7.6 130 291-422 323-486 (529)
58 2z6h_A Catenin beta-1, beta-ca 79.0 4.7 0.00016 48.7 9.5 132 289-422 25-166 (644)
59 3m1i_C Exportin-1; heat repeat 79.0 1.1E+02 0.0039 39.1 22.8 130 291-422 208-370 (1049)
60 2of3_A ZYG-9; multifunctional 78.9 31 0.0011 37.7 15.0 129 286-422 95-233 (266)
61 1w63_A Adapter-related protein 78.1 4.6 0.00016 49.0 9.0 93 288-390 323-415 (618)
62 1jdh_A Beta-catenin; beta-cate 77.3 4.1 0.00014 47.1 8.0 131 289-421 28-168 (529)
63 1lrv_A LRV, leucine-rich repea 74.1 4.4 0.00015 43.7 6.5 93 282-420 102-194 (244)
64 2z6h_A Catenin beta-1, beta-ca 73.3 10 0.00036 45.7 10.3 129 292-422 321-483 (644)
65 2z6g_A B-catenin; FULL-length, 71.3 6.8 0.00023 48.9 8.3 131 289-421 161-301 (780)
66 1xm9_A Plakophilin 1; armadill 69.7 18 0.00061 42.0 10.9 129 291-422 297-446 (457)
67 3grl_A General vesicular trans 65.5 29 0.00099 42.5 11.6 132 291-422 35-192 (651)
68 2vgl_A Adaptor protein complex 58.4 18 0.00063 43.9 8.4 60 288-347 158-217 (621)
69 3ibv_A Exportin-T; karyopherin 58.0 21 0.00073 45.8 9.2 95 290-386 205-303 (980)
70 3gs3_A Symplekin, LD45768P; he 56.9 2.2E+02 0.0074 30.8 17.6 127 293-427 30-175 (257)
71 3l6x_A Catenin delta-1; cateni 56.1 52 0.0018 39.9 11.7 129 291-422 322-473 (584)
72 3o2t_A Symplekin; heat repeat, 52.7 64 0.0022 37.1 11.1 126 294-427 41-185 (386)
73 2x19_B Importin-13; nuclear tr 49.3 92 0.0032 39.1 13.0 132 291-422 698-843 (963)
74 4hat_C Exportin-1; heat repeat 48.6 5.5E+02 0.019 33.0 28.4 149 162-347 114-264 (1023)
75 1wa5_C Importin alpha RE-expor 48.1 25 0.00086 44.6 7.5 97 291-388 471-584 (960)
76 2x1g_F Cadmus; transport prote 43.0 52 0.0018 41.5 9.3 94 289-389 517-615 (971)
77 3now_A UNC-45 protein, SD10334 42.7 50 0.0017 41.6 8.8 141 281-422 498-649 (810)
78 4ady_A RPN2, 26S proteasome re 42.3 1.2E+02 0.0043 38.7 12.3 120 289-420 519-671 (963)
79 2rg8_A Programmed cell death p 40.3 31 0.0011 34.9 5.4 67 357-424 41-114 (165)
80 3m1i_C Exportin-1; heat repeat 38.2 23 0.0008 45.4 5.0 81 289-369 815-904 (1049)
81 4ady_A RPN2, 26S proteasome re 37.9 1.1E+02 0.0039 39.1 11.0 89 289-390 589-677 (963)
82 3oc3_A Helicase MOT1, MOT1; re 34.3 82 0.0028 38.3 8.2 108 283-406 228-340 (800)
83 2ion_A PDCD4, programmed cell 33.1 60 0.0021 32.3 6.0 66 356-421 39-112 (152)
84 2x19_B Importin-13; nuclear tr 33.0 54 0.0018 41.2 7.1 76 291-366 786-866 (963)
85 1xm9_A Plakophilin 1; armadill 32.9 1E+02 0.0035 35.5 8.9 102 320-422 5-113 (457)
86 3now_A UNC-45 protein, SD10334 30.0 84 0.0029 39.6 7.9 130 289-422 634-779 (810)
87 2nsz_A Programmed cell death p 29.4 76 0.0026 30.6 5.9 65 356-420 37-109 (129)
88 2x1g_F Cadmus; transport prote 27.8 1.9E+02 0.0066 36.3 10.9 95 293-390 204-326 (971)
89 2zu6_B Programmed cell death p 24.3 59 0.002 36.2 4.6 64 357-421 34-104 (307)
90 3eiq_C Programmed cell death p 24.3 59 0.002 37.0 4.6 66 358-424 86-158 (358)
91 3ibv_A Exportin-T; karyopherin 24.1 1.1E+02 0.0038 39.3 7.6 89 270-363 490-585 (980)
92 3l9t_A Putative uncharacterize 22.9 4.9E+02 0.017 27.9 11.1 104 299-419 57-162 (240)
93 3opb_A SWI5-dependent HO expre 22.9 1.5E+02 0.0051 37.2 8.1 115 293-422 596-725 (778)
94 3l6a_A Eukaryotic translation 22.6 90 0.0031 35.4 5.8 66 356-421 43-115 (364)
95 2xpp_A IWS1, ECU08_0440; trans 21.8 38 0.0013 33.8 2.1 82 182-307 55-136 (145)
No 1
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.60 E-value=0.012 Score=60.72 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=83.3
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.|-+|.+|..++..||..- ++..+..|--+|.|+++.||..++.+|..+-. + ...+.|++
T Consensus 60 ~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~~ 119 (211)
T 3ltm_A 60 KDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-E-----------RAVEPLIK 119 (211)
T ss_dssp TCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G-----------GGHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H-----------HHHHHHHH
Confidence 5678899999999998642 34567777788899999999999999887742 1 13456777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+..|.|..|+..|+..|..+- .++-+..+..++-|.++.||.+|..-+..
T Consensus 120 ~l~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 120 ALKDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 778889999999998888773 23445677777878888999888876653
No 2
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.48 E-value=0.017 Score=59.01 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=82.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.|-+|.+|..++..||..- ++..+..|--+|.|+++.||..++.+|..+-. + ...+.|+.
T Consensus 55 ~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~~ 114 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-E-----------RAVEPLIK 114 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G-----------GGHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H-----------HHHHHHHH
Confidence 4668889999999888641 34567777778889999999999998888642 1 13456777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+..|.|+.|+..|+..|..+-. ++-+..+..++-|.++.||.+|..-+..
T Consensus 115 ~l~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 115 ALKDEDWFVRIAAAFALGEIGD-----ERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTC-----GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCC-----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7788888999999888877742 3455677777778888888888876653
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.43 E-value=0.99 Score=56.45 Aligned_cols=103 Identities=23% Similarity=0.281 Sum_probs=81.0
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 286 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
-..|.++++|..++..|+.++...|..+.. +.+++.+.-.+.|++..||..++.+|..|.+.. ...+..+...+-+
T Consensus 182 ~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~--~~~~~~~l~~l~~ 259 (852)
T 4fdd_A 182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR--MDRLLPHMHNIVE 259 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHH
Confidence 346889999999999999988777665433 467888888899999999999999999998642 1223334445556
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
-++....|.|.+|+..|+..+..+.+.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 667777899999999999999888765
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.36 E-value=0.011 Score=69.53 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=89.4
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
..|-++.+|..++..||.+....+..|+.+..+..+-..|.|++..||..++.+|..+...-. + ..+...+-+.|+
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~--~~~~~~llp~l~ 486 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG--K--EWAHATIIPKVL 486 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--H--HHHHHHTHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--c--hhHHHHHHHHHH
Confidence 357777888888888888887777777777777777777888888888888888887764310 1 123456777777
Q ss_pred hhcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~-~--~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
.+..|.++.||..|+..+..|.+. | ...+.=+..+..++-|.++.||.+|..-+.
T Consensus 487 ~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp HTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Confidence 777788888888888888777664 1 000111223444455777788877776654
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.29 E-value=0.017 Score=59.44 Aligned_cols=111 Identities=23% Similarity=0.171 Sum_probs=89.8
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
..|-+|.+|..++..||..- ++..+..|-..|.|+++.||..++.+|..+-. + ..-+.|+
T Consensus 28 L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~ 87 (211)
T 3ltm_A 28 LQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-E-----------RAVEPLI 87 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-G-----------GGHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-H-----------HHHHHHH
Confidence 35789999999999999641 24677888889999999999999999988742 1 1335677
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
++..|.|+.|+..|+..|..+-. ++-+..+..++-|.++.||.+|..-+..
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGD-----ERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC-----GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc-----HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77789999999999999887743 4456788888889999999999887754
No 6
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.21 E-value=0.021 Score=61.43 Aligned_cols=117 Identities=19% Similarity=0.114 Sum_probs=86.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.|-+|.+|..++..||..-...|. ..+..+..|-..|.|+++.||..++.+|..+-. ++ .-+.|+.
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~-----------~~~~L~~ 166 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KA-----------TIPLLIN 166 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----C-----------CHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HH-----------HHHHHHH
Confidence 478899999999999986544432 234567788888999999999999999987643 21 3456777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
+..|.|..|+..|+..|..+- .-+++-+..+..++-|.++.||.+|..-+.
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~---~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININK---YDNSDIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHT---CCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhc---cCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 778999999999999887762 123334556777778889999998887764
No 7
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.21 E-value=0.017 Score=58.91 Aligned_cols=115 Identities=22% Similarity=0.190 Sum_probs=92.2
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHH
Q 001174 283 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFS 362 (1132)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk 362 (1132)
++...+|-+|.+|..++..||..- ++..+..|--+|.|+++.||..++.+|..+-. + ...
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-~-----------~~~ 78 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-E-----------RAV 78 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G-----------GGH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-H-----------HHH
Confidence 566778899999999999999532 23567788888999999999999999988742 1 234
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+.|+++..|.|+.|+..|+..|..+- +++-+..+..++-|.++.||.+|..-+..
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56777788999999999999988764 33456788888889999999999887653
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.18 E-value=0.0071 Score=71.31 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=99.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.|-+|.+|..+++.||.+....+.....+..+.++--+++|.+..||..++.+|..+...-. -..+...+.+.+..
T Consensus 174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~ 249 (588)
T 1b3u_A 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQ 249 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC----HHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHH
Confidence 68899999999999999998887654445667788888999999999999999998875321 12355567777788
Q ss_pred hcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~-~--~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
++.|.++.||..|++.+..|... | ...++=+..+..++-|.++.||.+|+..+..
T Consensus 250 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88999999999999999988874 2 0011112345566668999999998876543
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.83 E-value=0.048 Score=57.73 Aligned_cols=134 Identities=9% Similarity=0.124 Sum_probs=105.3
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccc---hhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001174 285 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQD---LYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360 (1132)
Q Consensus 285 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d---~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~R 360 (1132)
....|-+...|...+..|+.-+...|. +..+ ..+.+|.-.|. |+++.||..++.+|..|-.. ....+..+...
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l~~~~~~~~~~ 98 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--LAKRFSNYASA 98 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HGGGGHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--HhhhHHHHHHH
Confidence 344588999999999999999888764 3333 34666666785 99999999999999999852 33456778888
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 361 FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 361 Fk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+-+-|++...|+...|+..|...+..+....-+ +.=+..+...+-+.++.||..+..++..
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-EAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999886311 1123455566668899999999999865
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.70 E-value=0.04 Score=56.29 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=101.7
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHH-HHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG-LFTERFSNR 364 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~-lFt~RFk~R 364 (1132)
+-+|++|..++..||.-....|. .+++...+..|-.+|.+.++.||..++.+|..|-...+ .... ......-+.
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAVIDAGALPA 142 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCcHHH
Confidence 45899999999999976544443 46777889999999999999999999999999975321 1221 233456788
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
|+.+..+.|..|+..|+..|..|...+ +.+..-+..+.+++-+.++.|+..|...+.
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999998889999999999999998752 223333557778888899999999988765
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.46 E-value=0.033 Score=57.97 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=101.0
Q ss_pred CCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lFt~RFk~R 364 (1132)
+-++++|..++..|+.-....| ..+.+...+..|-.+|.+.++.||..++.+|..|-. +++... .......-+.
T Consensus 55 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~ 132 (252)
T 4hxt_A 55 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK--AIVDAGGVEV 132 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH--HHHHCCCHHH
Confidence 4569999999999998775433 356777889999999999999999999999999984 332221 1222346778
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
|+.+..+.+..|+..|+..|..|.... +++..-+..+..++-+.++.++..|...+..
T Consensus 133 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 133 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 196 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999987641 2233334567777778888888888877664
No 12
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.43 E-value=0.062 Score=56.85 Aligned_cols=103 Identities=11% Similarity=0.180 Sum_probs=83.8
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
..+.+|-.+.+|..+...|..++...+- +..+..|.-.|.|+++.||..++..|..+...-........+...+-+
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p 179 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 3578899999999999999999987652 456677777899999999999999999987542111123455567888
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
-++.+..|.+.+||..|+..+..|.+.
T Consensus 180 ~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 180 SLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876
No 13
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.18 E-value=0.066 Score=57.53 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=84.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
.|-+|.+|..++..||..-. .+.. + +..+..+. ++++|+++.||..++.+|..+-... ..+...+-+.++
T Consensus 64 ~d~~~~vR~~A~~aL~~l~~-~~~~-~-~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~------~~~~~~~~~~L~ 134 (280)
T 1oyz_A 64 SDKNYIRRDIGAFILGQIKI-CKKC-E-DNVFNILNNMALNDKSACVRATAIESTAQRCKKN------PIYSPKIVEQSQ 134 (280)
T ss_dssp TCSSHHHHHHHHHHHHHSCC-CTTT-H-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcc-cccc-c-hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC------CcccHHHHHHHH
Confidence 57789999999999986421 1111 1 12334444 5689999999999999999886321 123345667788
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
.+..|.|+.|+..|+..|..+-. ++-+..+..++-|.++.||.+|..-+.
T Consensus 135 ~~l~d~~~~vR~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 135 ITAFDKSTNVRRATAFAISVIND-----KATIPLLINLLKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHTC--------CCHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88889999999999987765432 345678888888999999999887764
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.10 E-value=0.21 Score=52.35 Aligned_cols=134 Identities=11% Similarity=0.058 Sum_probs=103.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
++-+|++|..++..|+.-....| ..+++...+..|-.+|.+.++.||..|+.+|..|-..++.. .-...-...-+.
T Consensus 64 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~ 142 (252)
T 4db8_A 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPA 142 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHH
Confidence 34569999999999997765443 35667788999999999999999999999999997654322 011223336678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
|+.+..+.|..|+..|+..|..|.... +.+..-+..+..++-+.++.|+..|...+..
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999998899999999999999998742 2233445678888888999999999888764
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.05 E-value=0.082 Score=54.91 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=102.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSN 363 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~ 363 (1132)
++-+|++|..++..|+......| ..+.+...+..|--.|.+.+..||..++.+|..|-.. ++.. -.......-+
T Consensus 12 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~ 89 (252)
T 4hxt_A 12 TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI--KAIVDAGGVE 89 (252)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH--HHHHHCCCHH
Confidence 34459999999999999887766 3567778899999999999999999999999999764 2221 1222334567
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
.|+.+..+.|..|+..|+..|..|.... ++...-+..+.+++-+.++.++..|...+..
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8889998999999999999999998531 2223335577777878888888888877654
No 16
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.96 E-value=0.081 Score=53.96 Aligned_cols=134 Identities=12% Similarity=0.086 Sum_probs=101.8
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHHHHHHH
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLFTERFS 362 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lFt~RFk 362 (1132)
.++-++++|..++..|+.-....|. .+++..-+..|-..|.+.++.||..++.+|..|-. +++... ..+-.-.-
T Consensus 21 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 3567899999999999987755443 57777889999999999999999999999999964 322211 11222345
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+.|+.+..+.|..|+..|+..|..|.... +++..-+..+.+++-+.++.++..|...+..
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 78899998889999999999999998641 2233335577788888889999888887664
No 17
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.84 E-value=0.0072 Score=58.24 Aligned_cols=112 Identities=15% Similarity=0.055 Sum_probs=59.3
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001174 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 361 (1132)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 361 (1132)
.++.-..|-+|.+|..++..||..- .+ -+..|--.|.|+++.||..++.+|..+-. ...
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~--~~-------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a 74 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMG--DE-------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERA 74 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCS--ST-------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhC--ch-------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHH
Confidence 4445555666666666666666321 11 13445555667777777777766665531 112
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHH
Q 001174 362 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGEL 419 (1132)
Q Consensus 362 k~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~f 419 (1132)
.+.|+.+..|.|+.|+..|+..|..+- +++-+..+..++-|.++.||.+|..-
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~-----~~~a~~~L~~~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG-----GERVRAAMEKLAETGTGFARKVAVNY 127 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC-----SHHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344455555667777777766666553 12223445555556666666666543
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.74 E-value=0.058 Score=56.61 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=99.9
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHH-HHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG-LFTERFSNR 364 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~-lFt~RFk~R 364 (1132)
+-+|++|..|+..|+.-....+. .+.+...+..|--.|.+.++.||..++.+|..|-...+ .... ......-+.
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~ 184 (252)
T 4db8_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAVIDAGALPA 184 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh--HHHHHHHHCCCHHH
Confidence 45799999999999977665553 47778889999999999999999999999999975431 1121 223456778
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
|+++..+.|..|+..|+..|..|.... +++..-+..+..++-+.++.++..|...+.
T Consensus 185 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 185 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999998889999999999999987531 222233456777777888888888877654
No 19
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.50 E-value=0.37 Score=52.67 Aligned_cols=130 Identities=14% Similarity=0.202 Sum_probs=93.4
Q ss_pred ccHHHHHHHHH-HHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCC
Q 001174 252 PRVESLNKRLS-MTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKS 330 (1132)
Q Consensus 252 ~r~e~l~~~~~-e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~ 330 (1132)
.|++.|.+-.+ -++..-..+.+++..|+. |.+. -..++|.-|++-|+.=....| ++-...+--|-.+|.|.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~--~~~~---~~~~vrk~~~~Fi~e~~~~k~--~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLS--LAHD---SNMEVRKQVVAFVEQVCKVKV--ELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHG--GGGC---SCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHH--hccC---ChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCC
Confidence 45555544333 233345566777777776 5444 679999999999988887776 466667777777799999
Q ss_pred hhHHHHHHHHHHhhhh--------cCCC----cccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHh
Q 001174 331 ASVRKSSVLALQNLYE--------VDDN----VPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLR 389 (1132)
Q Consensus 331 ~~VR~~~L~aL~~Ly~--------~~~~----~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~ 389 (1132)
+.|-..++.+...+|. ++.. -.....++. ||.+|+.|-.....+|+..||+.+..+.-
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~-lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL-IKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH-HHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 9999999999999994 2221 123445555 99999999766677888888887777654
No 20
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.34 E-value=2.2 Score=46.80 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=51.2
Q ss_pred CChhHHHHHHHHHHHHHhhCccccccchhh---hhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001174 290 IDPNIRMSCIQSLGVWILSYPSFFLQDLYL---KYLGWTLNDKSASVRKSSVLALQNLYEV 347 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YL---KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 347 (1132)
-.+..|.+|+.+|+.-|..|-..+ ..+| +-++=.|+|+++.||.+|++.+..+|..
T Consensus 179 KN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 179 KNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999996664 6699 9999999999999999999999999963
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.25 E-value=0.18 Score=60.95 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=76.7
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhh----hhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHH
Q 001174 283 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKY----LGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLF 357 (1132)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKY----lGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lF 357 (1132)
|..-..|-+|.||...+..||.-. .+....| +--.|.|+++.||.+|+.+|.++|.. ++. +..
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~--------~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~- 158 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIR--------VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VED- 158 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCC--------SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHH-
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccc-
Confidence 445567889999999999998542 3344455 77789999999999999999999974 332 221
Q ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 358 TERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 358 t~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
..|-+++.++..|.|+.|+..|+.++..|.+..
T Consensus 159 -~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 159 -QGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp -HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred -ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 357778899999999999999999999998763
No 22
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.10 E-value=0.16 Score=54.76 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=85.0
Q ss_pred cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCC
Q 001174 315 QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLL 393 (1132)
Q Consensus 315 ~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l-Ft~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L 393 (1132)
+..+|--+--.|+|+++.|+..+|.+|..+.+.-+ ..+.. -++++-++||+++.++|..|++.|++++..|+...=|
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~--~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRAD--SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 34577778888999999999999999999997532 23433 5778999999999999999999999999999999989
Q ss_pred CCCChhhHH----hhhcCCChHHHHHHHHHH
Q 001174 394 PDDDLGPLY----DLLIDDPPEIRRAIGELV 420 (1132)
Q Consensus 394 ~~ed~~~V~----~Lvfd~~~~Vr~AAg~fv 420 (1132)
++++...+. .++=..++.++-.|++-+
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~L 139 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVL 139 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHh
Confidence 988887665 344467888888777754
No 23
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.04 E-value=0.0053 Score=59.17 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=62.2
Q ss_pred HhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHH
Q 001174 306 ILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVK 385 (1132)
Q Consensus 306 i~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~ 385 (1132)
|-.||.+...+.++..+-..|.|+++.||..++.+|..+-. + . + +.|+.+..|.|+.|+..|+..|.
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-~----~-------~-~~L~~~L~d~~~~vR~~A~~aL~ 67 (131)
T 1te4_A 1 MGSSHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-E----A-------F-EPLLESLSNEDWRIRGAAAWIIG 67 (131)
T ss_dssp --------------------CCSSCCCSSSSCCSSTTSCSS-T----T-------H-HHHHHGGGCSCHHHHHHHHHHHG
T ss_pred CCcccccccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-h----H-------H-HHHHHHHcCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999998876632 1 1 2 56778888999999999999876
Q ss_pred HHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 386 QLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 386 ~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
.+-. ++-+..+..++-|.++.||.+|+.-+-.
T Consensus 68 ~~~~-----~~a~~~L~~~L~d~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 68 NFQD-----ERAVEPLIKLLEDDSGFVRSGAARSLEQ 99 (131)
T ss_dssp GGCS-----HHHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred hcCC-----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6532 3345677778889999999999887653
No 24
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.39 Score=52.06 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=75.6
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC-CCcccHHHHHHHHHHHH
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD-DNVPTLGLFTERFSNRM 365 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~-~~~~~L~lFt~RFk~Rl 365 (1132)
.-|.-+.+|..+++.|-.|+..... ....+.++.-.|..|++.||.+|+..|..++..- -.......+...+.+-+
T Consensus 112 l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l 188 (278)
T 4ffb_C 112 LTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHV 188 (278)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGH
T ss_pred hcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHH
Confidence 4677899999999999999864321 1223566667789999999999999999997541 01122445555555566
Q ss_pred hhhcccCchhHHHHHHHHHHHHHhc
Q 001174 366 IELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 366 VeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
..+..|.|.+||..|++++..|++.
T Consensus 189 ~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 189 PQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 6666899999999999999999996
No 25
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.79 E-value=0.26 Score=61.77 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=95.6
Q ss_pred HHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC
Q 001174 273 DMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN 350 (1132)
Q Consensus 273 ~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~ 350 (1132)
+++..++. .-.|-++++|..+++.|+..+..+|..|.. +.-+.++--.+.|++..||..++..+..+.+.+..
T Consensus 215 ~~l~~l~~-----~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 215 SFIENLFA-----LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHH-----HHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence 44444443 356899999999999999999999986543 23455666677999999999999999998765422
Q ss_pred cccHHHHHHHHHHHHhhhc-----------cc-----------CchhHHHHHHHHHHHHHhcCCCCCCChh----hHHhh
Q 001174 351 VPTLGLFTERFSNRMIELA-----------DD-----------IDVSVAVCAIGLVKQLLRHQLLPDDDLG----PLYDL 404 (1132)
Q Consensus 351 ~~~L~lFt~RFk~RlVeM~-----------~D-----------~D~~Vav~AI~Ll~~l~~~~~L~~ed~~----~V~~L 404 (1132)
...+..+..+.-+-++.+. .| .+..|+..|...+..|.+.. .++-+. .+..+
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKEL 367 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 2223344445555555443 23 44568888888888877752 122222 33445
Q ss_pred hcCCChHHHHHHHHHHH
Q 001174 405 LIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 405 vfd~~~~Vr~AAg~fv~ 421 (1132)
+.+.++.+|.+|...+.
T Consensus 368 l~~~~~~~R~aa~~alg 384 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLG 384 (852)
T ss_dssp HTCSSHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH
Confidence 56888999998877654
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.48 E-value=0.3 Score=55.38 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=99.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSN 363 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt-~RFk~ 363 (1132)
+|-++++|..++..||.-....|. .+++...+..|--.|.+.++.||..++.+|..|-... ......+. ..+-+
T Consensus 244 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN--RAQIQTVIDANIFP 321 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHH
T ss_pred CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHH
Confidence 467899999999999987665553 3566778889999999999999999999999997421 11222222 35677
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC-------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRHQ-------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
.|+.+..|.+..|+..|+..+..|...+ +++..-+..+..++-+.++.|+..|...+..
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 387 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8888888889999999999999997653 1222234466677778889999888877654
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.47 E-value=0.42 Score=62.38 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=102.3
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCCh--hHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001174 285 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSA--SVRKSSVLALQNLYEVDDNVPTLGLFTER 360 (1132)
Q Consensus 285 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~--~VR~~~L~aL~~Ly~~~~~~~~L~lFt~R 360 (1132)
...+|-.+.+|..|+..||.|+...|..+-. +..+..+-..|.|+++ .||..++..+..+.+.-. ...+..|...
T Consensus 441 ~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~l~~ 519 (1230)
T 1u6g_C 441 KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS-PQVFHPHVQA 519 (1230)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC-GGGGHHHHTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC-HHHHHhHHHH
Confidence 3367999999999999999999998865432 4567788899999985 999999999999986421 1235667788
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhc-CCC---CCCCh----hhHHh----hh--cCCChHHHHHHHHHHH
Q 001174 361 FSNRMIELADDIDVSVAVCAIGLVKQLLRH-QLL---PDDDL----GPLYD----LL--IDDPPEIRRAIGELVY 421 (1132)
Q Consensus 361 Fk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~-~~L---~~ed~----~~V~~----Lv--fd~~~~Vr~AAg~fv~ 421 (1132)
+-+.++....|....|+..|+..+..+.+. |-. .+.++ +.++. .+ .|.++.||.+|..-+.
T Consensus 520 llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg 594 (1230)
T 1u6g_C 520 LVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMG 594 (1230)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 888999888999999999999999988875 421 11222 33333 34 6788999988875543
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.45 E-value=0.23 Score=59.91 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.|-+|.+|..++..|+.....+|+..-++.++..+.-+|+|+++.||..|+.+|..+.........+ .+....-.+|+.
T Consensus 131 ~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~-~l~~~~~~~Ll~ 209 (591)
T 2vgl_B 131 KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL-DLNPQNINKLLT 209 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC-CCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch-hccHHHHHHHHH
Confidence 4889999999999999999999998777778899999999999999999999999998653211001 112222335555
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCh----hhHHhhhcCCChHHHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDL----GPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~----~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
...|.++-+++..++++..+.. -++++. +.+..++-+.++.|+.+|+..+..
T Consensus 210 ~l~~~~~~~q~~il~~l~~l~~---~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 210 ALNECTEWGQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp HHHHCCHHHHHHHHHHHHTSCC---CSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 5557788787777775543321 122222 233334446777777777777653
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.34 E-value=0.46 Score=53.87 Aligned_cols=133 Identities=16% Similarity=0.070 Sum_probs=96.2
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
++-+|++|..++..||.-....| ..+++...+..|--.|.+ .+..||..++.+|..|....+.......+ ...-+
T Consensus 117 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~ 195 (450)
T 2jdq_A 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLN 195 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHH
Confidence 34589999999999998776544 346667788888888885 89999999999999998653111122222 45667
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
.|+.+..+.|..|+..|+..|..|.... +....-+..+..++-+.++.++.+|...+.
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 8888888899999999999998887642 111223456667777777777777766654
No 30
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.95 E-value=0.97 Score=52.11 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=87.2
Q ss_pred ccHHHHHHHHHH-HHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCC
Q 001174 252 PRVESLNKRLSM-THKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKS 330 (1132)
Q Consensus 252 ~r~e~l~~~~~e-~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~ 330 (1132)
.+++.|.+-.+- ++.....+.+++..|+. |.+ |-..+||.-|++-|+.=...+++.- ...+-.|--+|.|.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~--f~~---d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIA--FQA---DKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNMLLRDEN 113 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHG--GGG---CSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hcc---CCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCC
Confidence 456555443221 23334444455555552 333 6689999999999998888877763 667778888899999
Q ss_pred hhHHHHHHHHHHhhhh--------cCCCc----ccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHH
Q 001174 331 ASVRKSSVLALQNLYE--------VDDNV----PTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLL 388 (1132)
Q Consensus 331 ~~VR~~~L~aL~~Ly~--------~~~~~----~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~ 388 (1132)
+.|-..++.+...||. ++... .....++. ||.+|+.|......+|+..||+.+..+.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~-lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSA-MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 9999999999999993 22211 23445555 8888888875556677777777665544
No 31
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.88 E-value=1.3 Score=50.12 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHHHHHhhC-cccccc--chhhhhhhhhcCCC--ChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSY-PSFFLQ--DLYLKYLGWTLNDK--SASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~y-P~~FL~--d~YLKYlGW~L~Dk--~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~R 364 (1132)
+|.+|..++..|+.-...+ |..+-. +..+..+.-.|.|. ++.||..++++|..+..- ++.... ..|..-+-+-
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~l~~~ 221 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK-ESERHFIMQV 221 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Confidence 7899999999999988877 443221 34567778889998 899999999999986421 000000 1122223445
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC--CCCCCChh-hHHhhh----cCCChHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ--LLPDDDLG-PLYDLL----IDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~--~L~~ed~~-~V~~Lv----fd~~~~Vr~AAg~fv~~ 422 (1132)
+.+...|.|.+|+..+++.+..+.... .+.+ .+. .+..++ -+.++.||..|.+|+..
T Consensus 222 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT-TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 555667899999999999999998752 2221 222 444433 37889999999998653
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.79 E-value=0.56 Score=55.26 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=99.0
Q ss_pred CChhHHHHHHHHHHHHHhh---CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 290 IDPNIRMSCIQSLGVWILS---YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~---yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
-++++|..++..||.-... +...+++...+..|-..|.+.+..||..++.+|..|....+-... .......-+.|+
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~ 263 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD-WSVVSQALPTLA 263 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC-HHHHGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHhHHHHHH
Confidence 3789999999999987654 344567778999999999999999999999999999865421122 223355677889
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
.+..+.|..|+..|+..|..|.... +++..-+..+..++-+.++.|+.+|...+.
T Consensus 264 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 264 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 9998889999999999999888641 122233456677777778888877776654
No 33
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=91.53 E-value=0.66 Score=48.37 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001174 267 NITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE 346 (1132)
Q Consensus 267 ~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1132)
+-+.+..+.--+|. -||=-+|.||.----.||.-|..||..- +.-.|-+|.||.+|+..-|+.+|.-+..+=.
T Consensus 101 ~Pe~v~~vVp~lfa-----nyrigd~kikIn~~yaLeeIaranP~l~--~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 101 KPELVKSMIPVLFA-----NYRIGDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp CHHHHHHHHHHHHH-----HSCCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred CHHHHHhhHHHHHH-----HHhcCCccceecHHHHHHHHHHhChHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 44556666666663 5888899999999999999999999853 5577999999999999999999998888754
Q ss_pred cCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 347 VDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 347 ~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
| +++ ...=|-+||+.+..|.|.-||..|+.-|..+-..
T Consensus 174 n-----~~~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 174 N-----SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp T-----THH-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred c-----Ccc-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 3 222 2233888999999999999999999988776654
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.26 E-value=0.89 Score=48.93 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=84.2
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCcccccc---chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc-ccHHHHH-
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ---DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV-PTLGLFT- 358 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~---d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~-~~L~lFt- 358 (1132)
+.|+.|--+.+|.....+|-.|+...+..... +..|.-|.-.|..+++.||.+++..|..+...-... ..+....
T Consensus 110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 47899999999999999999999876332221 135666777889999999999999999999653221 2344455
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 359 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 359 ~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
..+-+.++.+..|.+.+||..|+..+..|.+.
T Consensus 190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 190 DEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66777888888999999999999999999886
No 35
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.92 E-value=37 Score=41.75 Aligned_cols=131 Identities=19% Similarity=0.138 Sum_probs=95.8
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM 368 (1132)
|-++.+|..+...|+.....+|+..+. ..+.++.-.|.|++..||..++.+|..+..... ...+..+...+-+.++.+
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~~~~l~~l~~~ 416 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIEL 416 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcHhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHH
Confidence 346789999999999888888865544 667788888999999999999999999875321 012445666677778888
Q ss_pred cccCchhHHHHHHHHHHHHHhcC---CCCCCChhhHHhhhc---CCChHHHHHHHHHHH
Q 001174 369 ADDIDVSVAVCAIGLVKQLLRHQ---LLPDDDLGPLYDLLI---DDPPEIRRAIGELVY 421 (1132)
Q Consensus 369 ~~D~D~~Vav~AI~Ll~~l~~~~---~L~~ed~~~V~~Lvf---d~~~~Vr~AAg~fv~ 421 (1132)
..|.+..|+..|+..+..+.+.- +........+...++ .+++.|+.+|...+.
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~ 475 (876)
T 1qgr_A 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999999998851 112233444443333 335889888877654
No 36
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=90.84 E-value=37 Score=41.64 Aligned_cols=101 Identities=8% Similarity=0.101 Sum_probs=71.9
Q ss_pred cCC--ChhHHHHHHHHHHHHHhhCcccccc----chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH-H
Q 001174 288 RDI--DPNIRMSCIQSLGVWILSYPSFFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE-R 360 (1132)
Q Consensus 288 RDv--~p~IR~~Ci~eLG~Wi~~yP~~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~-R 360 (1132)
.|- ++++|..+++.|+.|+...+..|-. +..+..+.-.+.|.+..+|..+++.|..+.+.. ...+..+.. .
T Consensus 189 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~ 266 (861)
T 2bpt_A 189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY--YTFMKPYMEQA 266 (861)
T ss_dssp STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH--GGGCHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 465 8999999999999998655544432 234666677789999999999999999887531 111222222 3
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 361 FSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 361 Fk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
+-+-++....|.|..|+..|+.++..+.+.
T Consensus 267 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 267 LYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 333444455799999999999999888765
No 37
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.69 E-value=0.88 Score=48.95 Aligned_cols=139 Identities=11% Similarity=0.125 Sum_probs=101.2
Q ss_pred EeccccCCChhHHHHHHHHHHH-HHhhCccccc-cc---hhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCCCc-ccHH
Q 001174 283 FVHRYRDIDPNIRMSCIQSLGV-WILSYPSFFL-QD---LYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDDNV-PTLG 355 (1132)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~-Wi~~yP~~FL-~d---~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~-~~L~ 355 (1132)
|..+..+-.+.-|..-+++|+. -+...|..-- .. ..++-|.-.| .|++..||..++++|..|-+ .+. +.+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~ 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFS 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hccccccc
Confidence 3444567788889999999998 7666665442 33 3355555567 89999999999999999973 233 3555
Q ss_pred -HHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC--CCC---CC-ChhhHHhhhcCCChHHHHHHHHHHHHH
Q 001174 356 -LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ--LLP---DD-DLGPLYDLLIDDPPEIRRAIGELVYDH 423 (1132)
Q Consensus 356 -lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~--~L~---~e-d~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 423 (1132)
.|...+-+-|++...|+...|+..|...+..+.++- ... .+ =++.+...+=+.++.+|.++..|+..-
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 788888889999999999999999999999999862 110 11 123445555567999999999998754
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=90.68 E-value=0.36 Score=56.91 Aligned_cols=139 Identities=8% Similarity=0.066 Sum_probs=100.2
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC-cccHHH-HH
Q 001174 284 VHRYRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN-VPTLGL-FT 358 (1132)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~-~~~L~l-Ft 358 (1132)
+.-..+-++.||..++..||......|. .+++...+..|--+|.+.+..||..++.+|..|-..... ...... ..
T Consensus 347 ~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~ 426 (530)
T 1wa5_B 347 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 426 (530)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3344566899999999999987765544 355677888888889999999999999999999753211 011112 22
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC-----------------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 359 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ-----------------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 359 ~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~-----------------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
...-+.|+.+..+.|..|+..|+..|..|...+ +.+..-++.+..|..+.++.|+..|...+.
T Consensus 427 ~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 427 QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345678888888889999999999998888742 111122456677788888888887777664
Q ss_pred H
Q 001174 422 D 422 (1132)
Q Consensus 422 ~ 422 (1132)
.
T Consensus 507 ~ 507 (530)
T 1wa5_B 507 T 507 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=90.45 E-value=1.2 Score=50.44 Aligned_cols=133 Identities=11% Similarity=-0.020 Sum_probs=86.7
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCcccccc---chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC---------------
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQ---DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD--------------- 348 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~---d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~--------------- 348 (1132)
..|.++++|..+++.|+.++..||..|-. ...+.++--.+.|.+..||..++..+..+-+..
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 46889999999999999999999986542 134445545678999999999999887775431
Q ss_pred ----CCcccHHHHHHHHHHHHhhhcc-------cCchhHHHHHHHHHHHHHhcCCCCCCChhhH----HhhhcCCChHHH
Q 001174 349 ----DNVPTLGLFTERFSNRMIELAD-------DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL----YDLLIDDPPEIR 413 (1132)
Q Consensus 349 ----~~~~~L~lFt~RFk~RlVeM~~-------D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V----~~Lvfd~~~~Vr 413 (1132)
....-++.+....-+-++.+.. |.++.++..|..+|..|...- .+.-+..+ ...+-+.+..+|
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~r 383 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYR 383 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHTTCSSHHHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCChHHH
Confidence 0111122334455555555442 234678988988888887751 22212222 234447778888
Q ss_pred HHHHHHHH
Q 001174 414 RAIGELVY 421 (1132)
Q Consensus 414 ~AAg~fv~ 421 (1132)
.+|...+-
T Consensus 384 ~aal~~l~ 391 (462)
T 1ibr_B 384 DAAVMAFG 391 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766654
No 40
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=89.64 E-value=3 Score=44.96 Aligned_cols=139 Identities=11% Similarity=0.111 Sum_probs=90.8
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCccccccch----hhhhhhh---hcCCCChhHHHHHHHHHHhhhhcCCCc----ccH
Q 001174 286 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDL----YLKYLGW---TLNDKSASVRKSSVLALQNLYEVDDNV----PTL 354 (1132)
Q Consensus 286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~----YLKYlGW---~L~Dk~~~VR~~~L~aL~~Ly~~~~~~----~~L 354 (1132)
|.-+-.=..|...+++|..++...|..-..+. |.++.++ .+.|+|..|-..++.+|..+...-... ...
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 44444557899999999999987765443332 4444432 578999999999999998886532111 123
Q ss_pred HHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHHHH
Q 001174 355 GLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHL 424 (1132)
Q Consensus 355 ~lFt~RFk~RlVeM~-~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l 424 (1132)
..+...+-+.|++=+ -|....++..|+..+..+.......+.-.+.+...+=+.+|+|+.++..++...+
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 334556667777765 6888999999999998887764222222234444444789999999999987644
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.58 E-value=1.1 Score=49.72 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=102.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHH-HHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTE-RFS 362 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~-RFk 362 (1132)
..-+|+||..++..||.=....|. .+++..-+.+|--+|. |++..||.+++.+|..|-.+. .+....|.+ -.-
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~--~~~~~~~~~~ggi 169 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ--EAGLLQFLRLDGF 169 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC--cHHHHHHHHCCCH
Confidence 456899999999999987777764 5888888999988887 678999999999999998643 233344443 455
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 363 ~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+-|+.+..+.|..|...|+.+|..|...+ +.+..-+..+..|+-+.++.|+..|...+..
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 67888888889999999999999987651 2233334567788888888888888877654
No 42
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.99 E-value=1.1 Score=51.29 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=76.8
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001174 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlV 366 (1132)
..|-.|-||..-+..||.- -....++ .-.+|+--+|.|+++-||..|+-+..+||... +.+ .++|-+.+-
T Consensus 113 l~~~N~~iR~lALRtL~~I---~~~~m~~-~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~---pe~---v~~~~~~l~ 182 (355)
T 3tjz_B 113 MTGKEDSYRGPAVRALCQI---TDSTMLQ-AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS---FDV---VKRWVNEAQ 182 (355)
T ss_dssp HHSSCHHHHHHHHHHHHHH---CCTTTHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC---HHH---HHTTHHHHH
T ss_pred cCCCcHhHHHHHHHHHhcC---CCHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC---HHH---HHHHHHHHH
Confidence 3678899999999999954 3333333 35689999999999999999999999999642 222 346777888
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcC
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
++..|.++.|...|+.++..|.+++
T Consensus 183 ~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 183 EAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCccHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998864
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=88.89 E-value=1 Score=52.80 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=98.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
++-++++|..|+..||.-....|. .+++...+..|-..| .+.+..||..++.+|..|....... .. ......-+
T Consensus 170 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~-~~~~~~l~ 247 (528)
T 4b8j_A 170 GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SF-EQTRPALP 247 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CH-HHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cH-HHHHHHHH
Confidence 346899999999999977655443 566667888888888 7899999999999999998764222 21 23355667
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
.|+.+..+.|.+|+..|+..|..|.... ++...-+..+..++-+.++.|+..|...+..
T Consensus 248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 8888988999999999999998887541 2222335567777777788887777766543
No 44
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=88.78 E-value=14 Score=46.18 Aligned_cols=134 Identities=13% Similarity=0.194 Sum_probs=86.9
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHH-HHHH
Q 001174 283 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLF-TERF 361 (1132)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lF-t~RF 361 (1132)
+|.+-.+-.+++|...+..|..= -..++...-+..|--+|.+.++.||..++.+|..|....+. +.... ....
T Consensus 120 lv~~L~~~~~~~r~~a~~~l~~~----~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~--~~~i~~~~~~ 193 (780)
T 2z6g_A 120 NVQRLAEPSQMLKHAVVNLINYQ----DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRSPQM 193 (780)
T ss_dssp ------CCSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH--HHHHTTCHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHhh----hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh--HHHHHhccCh
Confidence 55555566677777666666521 11233345556666677899999999999999999865422 11111 1235
Q ss_pred HHHHhhhc-ccCchhHHHHHHHHHHHHHhcC-----CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 362 SNRMIELA-DDIDVSVAVCAIGLVKQLLRHQ-----LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 362 k~RlVeM~-~D~D~~Vav~AI~Ll~~l~~~~-----~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
-+.||++. .+.|.+|+..|+..|..|.... +....-+..+..++-+.++.|+..|+..+..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66777777 4568999999999998876541 1222335577888888899999999988765
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=87.59 E-value=4.3 Score=50.01 Aligned_cols=129 Identities=14% Similarity=0.221 Sum_probs=96.3
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD 370 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~ 370 (1132)
.+.+|..+...|+.....+++..+ +..+.++.-.|.|++..+|..++.+|..+-+... ...+..+...+-+.++....
T Consensus 344 ~~~~r~~a~~~L~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~ 421 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQNCGNHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMN 421 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGG
T ss_pred cCcHHHHHHHHHHHHHHHccHhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999988886544 4677888888999999999999999999975321 12345566667777888888
Q ss_pred cCchhHHHHHHHHHHHHHhc---CCCCCCChhhHHhhhc---CCChHHHHHHHHHHH
Q 001174 371 DIDVSVAVCAIGLVKQLLRH---QLLPDDDLGPLYDLLI---DDPPEIRRAIGELVY 421 (1132)
Q Consensus 371 D~D~~Vav~AI~Ll~~l~~~---~~L~~ed~~~V~~Lvf---d~~~~Vr~AAg~fv~ 421 (1132)
|.+..|+..|+..+..+... .+........+...++ .+++.||.+|..-+.
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~ 478 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII 478 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 99999999999988888775 2334445555555443 344888888876654
No 46
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=87.17 E-value=2.7 Score=49.21 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=98.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc--cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYP--SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNR 364 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP--~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l-Ft~RFk~R 364 (1132)
.+-++.+|..|+..|+.-....| ........+..|--+|.+.++.||..++.+|..|-...+ ..... .....-++
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPR 290 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH--HHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCHHHH
Confidence 35689999999999998776543 334457788999999999999999999999999975432 22222 23346679
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCC-ChHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDD-PPEIRRAIGELVYD 422 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~-~~~Vr~AAg~fv~~ 422 (1132)
|+.+..+.+..|+..|+..|..|.... ++...-+..+..++-+. ++.|+++|...+..
T Consensus 291 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999998899999999999999887631 22323344566677777 78888887776553
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=86.75 E-value=2.4 Score=52.46 Aligned_cols=132 Identities=11% Similarity=-0.015 Sum_probs=88.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcccccc---chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC----------------
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQ---DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD---------------- 348 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~---d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~---------------- 348 (1132)
.|-++++|..|++.|+.++..||..|.. ...+.++--.+.|.+..||..++..+..+-+..
T Consensus 227 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 306 (876)
T 1qgr_A 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCC
Confidence 5788999999999999999999987542 234445544567899999999998887775421
Q ss_pred ---CCcccHHHHHHHHHHHHhhhcc-------cCchhHHHHHHHHHHHHHhcCCCCCCChhhH----HhhhcCCChHHHH
Q 001174 349 ---DNVPTLGLFTERFSNRMIELAD-------DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL----YDLLIDDPPEIRR 414 (1132)
Q Consensus 349 ---~~~~~L~lFt~RFk~RlVeM~~-------D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V----~~Lvfd~~~~Vr~ 414 (1132)
.....+......+-+-++.+.. |.++.|+..|..++..|...- .+.-+..+ ...+.+.++.+|.
T Consensus 307 ~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l~~l~~~l~~~~~~~r~ 384 (876)
T 1qgr_A 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC--cHhhHHHHHHHHHHHccCCChHHHH
Confidence 0111122233445555666542 456789999999888887751 12223333 3445588999999
Q ss_pred HHHHHHH
Q 001174 415 AIGELVY 421 (1132)
Q Consensus 415 AAg~fv~ 421 (1132)
+|...+.
T Consensus 385 ~a~~~l~ 391 (876)
T 1qgr_A 385 AAVMAFG 391 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 48
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.39 E-value=0.61 Score=50.48 Aligned_cols=89 Identities=22% Similarity=0.144 Sum_probs=46.2
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHH
Q 001174 286 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRM 365 (1132)
Q Consensus 286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rl 365 (1132)
=..|-++.+|..-...+ |. . .+.-++.|.++.||..++..+. . +-+
T Consensus 130 L~~D~d~~VR~~aA~~l-------~~-----~---~l~~l~~D~d~~VR~~aa~~l~---------~----------~ll 175 (244)
T 1lrv_A 130 MAADRDYLVRAYVVQRI-------PP-----G---RLFRFMRDEDRQVRKLVAKRLP---------E----------ESL 175 (244)
T ss_dssp GTTCSSHHHHHHHHHHS-------CG-----G---GGGGTTTCSCHHHHHHHHHHSC---------G----------GGG
T ss_pred HHcCCCHHHHHHHHHhc-------CH-----H---HHHHHHcCCCHHHHHHHHHcCC---------H----------HHH
Confidence 35666666666655532 11 1 2233456666666666665410 0 123
Q ss_pred hhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001174 366 IELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1132)
Q Consensus 366 VeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1132)
..|+.|.|+.|+..|+.-+ . .+.+..|+-|.+..||.+|+.-+
T Consensus 176 ~~ll~D~d~~VR~aaa~~l---------~---~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 176 GLMTQDPEPEVRRIVASRL---------R---GDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp GGSTTCSSHHHHHHHHHHC---------C---GGGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHcCCCHHHHHHHHHhC---------C---HHHHHHHHcCCCHHHHHHHHHcC
Confidence 3445666666666666531 1 23455555666666666666543
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.27 E-value=0.74 Score=55.96 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=72.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHHHh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNRMI 366 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~RlV 366 (1132)
.|-.|.||...+..||.-. -|+ .. ..-+..+.-.|.|+++.||.+|+.+|.++|.. ++.. +.|-+++.
T Consensus 117 ~~~n~~vr~lAL~~L~~i~--~~~-~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-------~~~~~~l~ 185 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMG--SSE-MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-------EMFLPATK 185 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHC--CHH-HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-------GGGGGGTT
T ss_pred CCCCHhHHHHHHHHHHhcC--CHH-HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-------HHHHHHHH
Confidence 5789999999999999643 232 22 23356677778999999999999999999974 3332 25777888
Q ss_pred hhcccCchhHHHHHHHHHHHHHhc
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
++..|.|+.|...|+.++..|...
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHh
Confidence 888999999999999999998654
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=83.58 E-value=1.4 Score=53.86 Aligned_cols=95 Identities=21% Similarity=0.350 Sum_probs=74.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc--CCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL--NDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L--~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~R 364 (1132)
.|-.|.||..-+..||.- .-|+ +-...+..+.-.| .|+++-||.+|+-++.++|+. ++..+. +.|-++
T Consensus 121 ~~~n~~ir~lALr~L~~i--~~~e--~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-----~~~~~~ 191 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANV--GSRE--MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-----GDWTSR 191 (621)
T ss_dssp HSCCHHHHHHHHHHHHHH--CCHH--HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-----CSCHHH
T ss_pred CCCCHHHHHHHHHHhhcc--CCHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-----hhHHHH
Confidence 467899999999999964 2344 2235667777888 999999999999999999974 333321 235567
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~ 391 (1132)
+.+|..|.|+.|...|+.++..|.+..
T Consensus 192 l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 192 VVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 778889999999999999999998763
No 51
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=83.07 E-value=2.8 Score=46.35 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=82.0
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~R 364 (1132)
|..+.+|..++-+|+.-...+|. .|.+..-+..|--+|.+.+..||.++..+|..|-.. ++....+ .-.-+-++
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v--v~~g~i~~ 213 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL--CSMGMVQQ 213 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH--HHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH--HHcCCHHH
Confidence 34689999999999998887764 688888899999999999999999999999999754 2222222 22346679
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhc
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
|++|....|..|+..|...|..|.+.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999888999999999999988875
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=82.10 E-value=5 Score=47.40 Aligned_cols=135 Identities=11% Similarity=0.130 Sum_probs=101.7
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
++-++.++..|+..||.-....+. ..++..-+.+|--+|.+++..||.++..+|..|-...... .-...-.-.-+.
T Consensus 303 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~-~~~v~~~g~i~~ 381 (529)
T 3tpo_A 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVPF 381 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTHHHH
T ss_pred cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHH-HHHHHhcCcHHH
Confidence 567899999999999987654443 4567778899999999999999999999999997543111 111222346678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC-------CCCCCChhhHHhhhcCCChHHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ-------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYDH 423 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 423 (1132)
|+.+..+.+..|+..|+..|..+...+ +.+..-+..+..|+-+.++.|+..+.+.+..-
T Consensus 382 Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 382 LVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 899998999999999999888776643 22333456788899999999999888876653
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=82.00 E-value=4.3 Score=47.85 Aligned_cols=135 Identities=11% Similarity=0.125 Sum_probs=101.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
++-.+.++..|+..||.-....+. ..++..-+..|--+|.+++..||..+..+|..|-..... ..-..+-...-+.
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v~~~g~i~~ 362 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPF 362 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHH
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHhcCCHHH
Confidence 456889999999999976544433 356777888888899999999999999999999754311 1111233346678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC-------CCCCCChhhHHhhhcCCChHHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ-------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYDH 423 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 423 (1132)
|+.+..+.|..|+.+|...|..+...+ +.+..-+..+..|+-+.++.|+..+.+.+..-
T Consensus 363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999998999999999999888877643 22334456888999999999999998877653
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=81.23 E-value=3.7 Score=48.40 Aligned_cols=144 Identities=10% Similarity=0.106 Sum_probs=103.3
Q ss_pred cceEeccccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH
Q 001174 280 TGLFVHRYRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL 356 (1132)
Q Consensus 280 ~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l 356 (1132)
=.+++.=.++-.++||..+...|+.-....+. ...+...+..+-..|.+.+..||.+|..+|..|-...+. ..+..
T Consensus 318 l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~ 396 (510)
T 3ul1_B 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVY 396 (510)
T ss_dssp GGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHH
Confidence 34567777888999999999988876544443 355677888999999999999999999999999653221 12222
Q ss_pred H-HHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC-CCC-----------CCChhhHHhhhcCCChHHHHHHHHHHHHH
Q 001174 357 F-TERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ-LLP-----------DDDLGPLYDLLIDDPPEIRRAIGELVYDH 423 (1132)
Q Consensus 357 F-t~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~-~L~-----------~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 423 (1132)
+ -.-.-+-|++|....|..|...++..|..|++.+ -+. -.-++.|-.|..+++..|++.|..++..
T Consensus 397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~- 475 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK- 475 (510)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH-
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 2 2223456788888899999999999988888752 111 1124567778889999999988888643
Q ss_pred HH
Q 001174 424 LI 425 (1132)
Q Consensus 424 l~ 425 (1132)
+|
T Consensus 476 yf 477 (510)
T 3ul1_B 476 YF 477 (510)
T ss_dssp HC
T ss_pred HC
Confidence 44
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=81.15 E-value=3.6 Score=53.67 Aligned_cols=128 Identities=21% Similarity=0.182 Sum_probs=89.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
-|.+..+|..+-+.||.-+...|.. ++-.|--.|.|.++.+|..|+.+|..+.... .+....+...|-+.++.
T Consensus 941 ~~~~~~~r~~~a~~lg~l~~~~~~~-----l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~--~~~~~~~l~~~~~~ll~ 1013 (1230)
T 1u6g_C 941 ECAEEGTRNVVAECLGKLTLIDPET-----LLPRLKGYLISGSSYARSSVVTAVKFTISDH--PQPIDPLLKNCIGDFLK 1013 (1230)
T ss_dssp CCSSTTHHHHHHHHHHHHHHSSGGG-----THHHHTTTSSSSCHHHHHHHHHHTGGGCCSS--CCTHHHHHHHHSTTTHH
T ss_pred cCcchhhHHHHHHHHhhhhccChHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHccC--chhhHHHHHHHHHHHHH
Confidence 3467789988888888888887754 4445555678999999999999988887542 23344555556667777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcC-CCCCCChhhHHhhhcC----------------------CChHHHHHHHHHHHH
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRHQ-LLPDDDLGPLYDLLID----------------------DPPEIRRAIGELVYD 422 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~~-~L~~ed~~~V~~Lvfd----------------------~~~~Vr~AAg~fv~~ 422 (1132)
+..|.|.+|+..|+..+..+.+++ -+-.+.+..+...+|. +.-.+|++|-+.++.
T Consensus 1014 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ 1091 (1230)
T 1u6g_C 1014 TLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYT 1091 (1230)
T ss_dssp HHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHH
Confidence 778999999999999999888763 2222344445544442 223677777777665
No 56
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=80.55 E-value=4.4 Score=47.85 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=102.7
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH
Q 001174 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT 358 (1132)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt 358 (1132)
++++=.++-.++||..++-.|+.-....+. ...+...+..|-.+|.+.+.+||.+|..+|..|-...+. ..+..+.
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~~~~l~ 417 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQIVYLV 417 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HHHHHHH
Confidence 455556778899999999998875544443 356777888999999999999999999999999653221 1222222
Q ss_pred -HHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC-C----------C-CCCChhhHHhhhcCCChHHHHHHHHHHHHHHH
Q 001174 359 -ERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ-L----------L-PDDDLGPLYDLLIDDPPEIRRAIGELVYDHLI 425 (1132)
Q Consensus 359 -~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~-~----------L-~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~ 425 (1132)
.-.-+-|++|....|..|...++..|..|++.+ - + +-.-++.|-.|..+++..|++.|...+- ++|
T Consensus 418 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie-~yf 496 (529)
T 3tpo_A 418 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE-KYF 496 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH-HHC
T ss_pred HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH-HHC
Confidence 223456888888899999999999888888642 1 1 1223567778888999999999888764 445
Q ss_pred H
Q 001174 426 A 426 (1132)
Q Consensus 426 ~ 426 (1132)
.
T Consensus 497 ~ 497 (529)
T 3tpo_A 497 S 497 (529)
T ss_dssp -
T ss_pred C
Confidence 4
No 57
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=80.48 E-value=2.6 Score=48.84 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHHHHhhCcc------ccccchhhhhhhhhcCCCC-hhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSYPS------FFLQDLYLKYLGWTLNDKS-ASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~------~FL~d~YLKYlGW~L~Dk~-~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
.+++|..++..|+.-....|+ .+.+...+..|--.|.+.. ..||..++.+|..+-..++... ...-..+-+
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~~i~ 400 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA--PLREQGAIP 400 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH--HHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhH--HHHHcCCHH
Confidence 489999999999987655454 5666677888888898887 5999999999999986554332 122234567
Q ss_pred HHhhhcccCchhHHHHHH----------------------HHHHHHHhc-----CCCCCCChhhHHhhhcCCChHHHHHH
Q 001174 364 RMIELADDIDVSVAVCAI----------------------GLVKQLLRH-----QLLPDDDLGPLYDLLIDDPPEIRRAI 416 (1132)
Q Consensus 364 RlVeM~~D~D~~Vav~AI----------------------~Ll~~l~~~-----~~L~~ed~~~V~~Lvfd~~~~Vr~AA 416 (1132)
.|+++..+.+.+|+.+|+ ..+..|... .+.+..-+..+..++.+.++.|+++|
T Consensus 401 ~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a 480 (529)
T 1jdh_A 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 480 (529)
T ss_dssp HHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHH
Confidence 788887777777765444 333332211 01112223467777778888888877
Q ss_pred HHHHHH
Q 001174 417 GELVYD 422 (1132)
Q Consensus 417 g~fv~~ 422 (1132)
+..+..
T Consensus 481 ~~~l~~ 486 (529)
T 1jdh_A 481 AGVLCE 486 (529)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 58
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=79.03 E-value=4.7 Score=48.74 Aligned_cols=132 Identities=15% Similarity=0.106 Sum_probs=93.7
Q ss_pred CCChhHHHHHHHHHHHHHhhCccc--cc-cchhhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSF--FL-QDLYLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~--FL-~d~YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
+-+|.+|..|+..|+......+.. .+ ....+..|--.|.+ .++++|..++.+|..|-..+++ +...+..-.-+.
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~--~~~i~~~g~i~~ 102 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LLAIFKSGGIPA 102 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH--HHHHHTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHHcCCHHH
Confidence 568999999999999887655432 22 33566666666664 5899999999999988765432 222233345678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
|+++..+.|..|+..|+..|..|.... +....-+..+..++-+.++.++.++...+..
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 899998889999999999999997652 1122334566777777888887777666543
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=79.00 E-value=1.1e+02 Score=39.09 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHHHHhhCccc-cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC--CC----cccH-HHH---HH
Q 001174 291 DPNIRMSCIQSLGVWILSYPSF-FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD--DN----VPTL-GLF---TE 359 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~-FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~--~~----~~~L-~lF---t~ 359 (1132)
.+++|..+++.++.|+.-.|.. ++++..+.++.-.+. .++++|..++..|..+.... +. ..++ ..| .+
T Consensus 208 ~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHH
Confidence 5889999999999998877643 456666665552221 27999999999999998762 21 0111 111 11
Q ss_pred HHHH-----------HHhhhcccCchhHHHHHHHHHHHHHhc--CCCCCC-----ChhhHHhh----hcCCChHHHHHHH
Q 001174 360 RFSN-----------RMIELADDIDVSVAVCAIGLVKQLLRH--QLLPDD-----DLGPLYDL----LIDDPPEIRRAIG 417 (1132)
Q Consensus 360 RFk~-----------RlVeM~~D~D~~Vav~AI~Ll~~l~~~--~~L~~e-----d~~~V~~L----vfd~~~~Vr~AAg 417 (1132)
.++. ++. .+.|.|.++.....+++..+.+. .++... .+..+..+ ....+..|+..+-
T Consensus 287 ~l~~si~p~~~~l~~~~~-~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~l 365 (1049)
T 3m1i_C 287 QIATSVMPVTADLKATYA-NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTL 365 (1049)
T ss_dssp HHHHHTCCTTSCHHHHHH-HTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHhhCCCcccHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 1111 111 13466777766666666665543 222111 12223333 3356778888888
Q ss_pred HHHHH
Q 001174 418 ELVYD 422 (1132)
Q Consensus 418 ~fv~~ 422 (1132)
+|...
T Consensus 366 efw~~ 370 (1049)
T 3m1i_C 366 DYWHN 370 (1049)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 60
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=78.92 E-value=31 Score=37.68 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=96.0
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCcc--cccc----chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH
Q 001174 286 RYRDIDPNIRMSCIQSLGVWILSYPS--FFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE 359 (1132)
Q Consensus 286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~--~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~ 359 (1132)
|.-|..+.+=.-|++.|..-+...-+ +.+. ...|-||--=|-|....||..+-..|..++.. .+. +
T Consensus 95 r~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v---~~~-----~ 166 (266)
T 2of3_A 95 RFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV---VGP-----L 166 (266)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH---HCH-----H
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH---CCH-----H
Confidence 66799999999999999887655433 2222 56778888888999999999988888777642 111 1
Q ss_pred HHHHHHhhhcccCchhHHHHHHHHHHHHHhc-CCCCCCCh---hhHHhhhcCCChHHHHHHHHHHHH
Q 001174 360 RFSNRMIELADDIDVSVAVCAIGLVKQLLRH-QLLPDDDL---GPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 360 RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~-~~L~~ed~---~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
++-+++++-...+...++++++..+..+... |+=...-+ ..|..++=|.+..||.||-.-+.+
T Consensus 167 ~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 167 KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233 (266)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2334677755789999999999999888875 76444455 667888889999999999876544
No 61
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=78.07 E-value=4.6 Score=48.95 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=73.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe 367 (1132)
.+-+|+||..++..|+.-...+|..|-. |+.-+--.|+|.+..||..++..|..+-.. +++..+ . +.|++
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-~nv~~i---v----~eL~~ 392 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNG-NNIRGM---M----KELLY 392 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-SSTHHH---H----HHHHH
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHH--HHHHHHHHccCCChhHHHHHHHHHHHHccc-ccHHHH---H----HHHHH
Confidence 4678999999999999999999988754 777888889999999999999999998753 333222 1 23444
Q ss_pred hcccCchhHHHHHHHHHHHHHhc
Q 001174 368 LADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 368 M~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
...+.|.+++..++..+..+-..
T Consensus 393 ~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 393 FLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHH
Confidence 44568899999999988888664
No 62
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=77.27 E-value=4.1 Score=47.12 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=93.2
Q ss_pred CCChhHHHHHHHHHHHHHhhCccc--cc-cchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSF--FL-QDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~--FL-~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
+-+|.+|..++..|+......+.. .+ ....+..+--.|. +.++.+|..++.+|..|-..+++ +-..+....-+.
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~~~g~i~~ 105 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LLAIFKSGGIPA 105 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH--HHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh--HHHHHHcCCHHH
Confidence 568999999999999876544321 22 3456777766675 45899999999999999765442 222333456678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
|+++..+.|.+|+..|+..|..|.... +.+..-+..+..++-+.++.++..+...+.
T Consensus 106 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 899998889999999999999987652 111222446677777888888877766554
No 63
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=74.14 E-value=4.4 Score=43.75 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=62.3
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001174 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 361 (1132)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 361 (1132)
.+..--.|-++.+|......| |. .. +--+++|+++.||..+...+ +
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l-------~~-----~~---L~~L~~D~d~~VR~~aA~~l------~------------- 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL-------PL-----EQ---LEQMAADRDYLVRAYVVQRI------P------------- 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CT-----GG---GGGGTTCSSHHHHHHHHHHS------C-------------
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CH-----HH---HHHHHcCCCHHHHHHHHHhc------C-------------
Confidence 455567788899998877743 21 22 33448899999999888742 0
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001174 362 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1132)
Q Consensus 362 k~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1132)
.+-+..++.|.|..|+..+++- +.+ .-+..++-|.++.||.+|+.-+
T Consensus 148 ~~~l~~l~~D~d~~VR~~aa~~---------l~~---~ll~~ll~D~d~~VR~aaa~~l 194 (244)
T 1lrv_A 148 PGRLFRFMRDEDRQVRKLVAKR---------LPE---ESLGLMTQDPEPEVRRIVASRL 194 (244)
T ss_dssp GGGGGGTTTCSCHHHHHHHHHH---------SCG---GGGGGSTTCSSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHc---------CCH---HHHHHHHcCCCHHHHHHHHHhC
Confidence 0133456679999998888874 221 2344567788999999888764
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=73.28 E-value=10 Score=45.73 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHhhCcc------ccccchhhhhhhhhcCCCC-hhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 292 PNIRMSCIQSLGVWILSYPS------FFLQDLYLKYLGWTLNDKS-ASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 292 p~IR~~Ci~eLG~Wi~~yP~------~FL~d~YLKYlGW~L~Dk~-~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
+++|..|+..||......|+ .+++...+..|--.|.+.+ ..||.+++.+|.+|...++.... ......-+.
T Consensus 321 ~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~--i~~~~~i~~ 398 (644)
T 2z6h_A 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP--LREQGAIPR 398 (644)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHH--HHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHH--HHHcCCHHH
Confidence 79999999999988654453 2555667788888888775 69999999999999876544321 123334556
Q ss_pred HhhhcccC----------------------chhHHHHHHHHHHHHHhcC-----CCCCCChhhHHhhhcCCChHHHHHHH
Q 001174 365 MIELADDI----------------------DVSVAVCAIGLVKQLLRHQ-----LLPDDDLGPLYDLLIDDPPEIRRAIG 417 (1132)
Q Consensus 365 lVeM~~D~----------------------D~~Vav~AI~Ll~~l~~~~-----~L~~ed~~~V~~Lvfd~~~~Vr~AAg 417 (1132)
|+++..+. +.+|...|++.|..|.... +....-+..+..++.+.++.|+++|.
T Consensus 399 Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~ 478 (644)
T 2z6h_A 399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 478 (644)
T ss_dssp HHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHH
Confidence 66665443 3456667777776444320 11222345888899999999999988
Q ss_pred HHHHH
Q 001174 418 ELVYD 422 (1132)
Q Consensus 418 ~fv~~ 422 (1132)
..+..
T Consensus 479 ~aL~~ 483 (644)
T 2z6h_A 479 GVLCE 483 (644)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 65
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=71.34 E-value=6.8 Score=48.92 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=93.2
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc--ccc-cchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPS--FFL-QDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~--~FL-~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 364 (1132)
+-++.+|..++..|+......+. ... .+..+..|-..|. +.++.+|..++.+|..|-..+++.. ..+..-.-+.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~--~i~~~g~I~~ 238 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL--AIFKSGGIPA 238 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH--HHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH--HHHHcCCHHH
Confidence 45899999999999987553321 122 3467888888886 4599999999999999876544322 2223345678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001174 365 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1132)
Q Consensus 365 lVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1132)
|+++..+.+..|+..|+..|..|.... +....-+..+..++-+.+..++..|...+.
T Consensus 239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 239 LVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999998889999999999999997652 111223446667777788888777766654
No 66
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=69.73 E-value=18 Score=41.97 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=95.0
Q ss_pred ChhHHHHHHHHHHHHHhhCcc--------ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSYPS--------FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFS 362 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~--------~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk 362 (1132)
.|+++..+.-.|+.-....+. .+.+..-+..|--+|.+.+..||.++..+|..|-.++.+.. ......-
T Consensus 297 ~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~---~i~~~~i 373 (457)
T 1xm9_A 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR---VMGNQVF 373 (457)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHH---HHHHHTH
T ss_pred CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHH---HHHHhhh
Confidence 478888888888765432211 23356678899999999999999999999999987654433 2334567
Q ss_pred HHHhhhcccCc------hhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCC-ChHHHHHHHHHHHH
Q 001174 363 NRMIELADDID------VSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDD-PPEIRRAIGELVYD 422 (1132)
Q Consensus 363 ~RlVeM~~D~D------~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~-~~~Vr~AAg~fv~~ 422 (1132)
+.||++....| .+|...|+..+..|...+ +.+..-++.+..|.-+. +..|+++|...+..
T Consensus 374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~ 446 (457)
T 1xm9_A 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446 (457)
T ss_dssp HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 78999985543 468888888888887653 33444456788888888 89999999988764
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=65.50 E-value=29 Score=42.50 Aligned_cols=132 Identities=21% Similarity=0.222 Sum_probs=99.0
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCc----------ccHHH-HH
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNV----------PTLGL-FT 358 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~----------~~L~l-Ft 358 (1132)
.++=|...+.+|-.+-+.||..+-...--.+++.+=.| .+.+.=..+|..|..++...+.- ..++. |+
T Consensus 35 l~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (651)
T 3grl_A 35 LLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFT 114 (651)
T ss_dssp SHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHH
Confidence 56778889999999999999888776666666766666 46666667888888888543221 12332 56
Q ss_pred HHH------HHHHhhhcccCchhHHHHHHHHHHHHHhcC-------CC-CCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 359 ERF------SNRMIELADDIDVSVAVCAIGLVKQLLRHQ-------LL-PDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 359 ~RF------k~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~-------~L-~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
+-| -.-|++|....|..|+..|+++|..|..+. +| .+.-+..+..++=|.+..||.+|..++.+
T Consensus 115 d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~ 192 (651)
T 3grl_A 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQA 192 (651)
T ss_dssp HHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 555 345788888899999999999999999762 55 56778888899999999999999887643
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=58.41 E-value=18 Score=43.85 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=55.2
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001174 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV 347 (1132)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 347 (1132)
.|.+|.||.-.+-.+......+|+..-.+.++..+.-+|.|+++.|...++.+|..+...
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 688999999999999999999999887778999999999999999999999999998753
No 69
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=58.01 E-value=21 Score=45.84 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=62.7
Q ss_pred CChhHHHHHHHHHHHHHhhCc-cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc-ccHHHHHH-HHHHHHh
Q 001174 290 IDPNIRMSCIQSLGVWILSYP-SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV-PTLGLFTE-RFSNRMI 366 (1132)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP-~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~-~~L~lFt~-RFk~RlV 366 (1132)
..|+++..|++.|+.|+.--| ..+.++.++..+.-.|+| +++|..|+..|..++...... .++.+.-. ...+.+-
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~ 282 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFS 282 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHH
Confidence 578999999999999998654 456689999999999987 899999999999999765332 12222111 1222332
Q ss_pred hhcc-cCchhHHHHHHHHHHH
Q 001174 367 ELAD-DIDVSVAVCAIGLVKQ 386 (1132)
Q Consensus 367 eM~~-D~D~~Vav~AI~Ll~~ 386 (1132)
.+.. +.|.++...-.+++..
T Consensus 283 ~l~~~~~D~d~~~~la~L~~~ 303 (980)
T 3ibv_A 283 KSQEQSTDPNFDEHVAKLINA 303 (980)
T ss_dssp C-----CCHHHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHH
Confidence 3332 5666665544444443
No 70
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=56.86 E-value=2.2e+02 Score=30.80 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHH-HhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccc
Q 001174 293 NIRMSCIQSLGVW-ILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADD 371 (1132)
Q Consensus 293 ~IR~~Ci~eLG~W-i~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D 371 (1132)
+-+..++.....- |...|. |+ +++|..+--.-+|++.+||.-++.-|...+..+. .+..+--+.|..|..|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~------~l~~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV------ELLPHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHh-HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcC
Confidence 4667777777763 445676 33 7788888888899999999999999999985431 2334455677788889
Q ss_pred CchhHHHHHHHHHHHHHhcC---CC-CCC---Chh-----------hHHhhhcCCChHHHHHHHHHHHHHHHHh
Q 001174 372 IDVSVAVCAIGLVKQLLRHQ---LL-PDD---DLG-----------PLYDLLIDDPPEIRRAIGELVYDHLIAQ 427 (1132)
Q Consensus 372 ~D~~Vav~AI~Ll~~l~~~~---~L-~~e---d~~-----------~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~ 427 (1132)
.|+.|.-.||...+.+++.- +. ++. +++ .|..++-+.+..||-.|.+|+-.-...+
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 99999999999999999851 11 221 123 4556655789999999999986544444
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=56.12 E-value=52 Score=39.86 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=95.1
Q ss_pred ChhHHHHHHHHHHHHHhhC---cc----ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSY---PS----FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~y---P~----~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 363 (1132)
.+.++.-++.+|....... +. .+-+..=+..|--+|...+..|+..+..+|..|-..+.+... +-...-+
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~---I~~g~ip 398 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL---IGKHAIP 398 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHH---HHhCCHH
Confidence 5788888888886664321 21 233445589999999999999999999999999876655433 3567889
Q ss_pred HHhhhcccC--------chhHHHHHHHHHHHHHhc------CCCCCCChhhHHhhhcCC--ChHHHHHHHHHHHH
Q 001174 364 RMIELADDI--------DVSVAVCAIGLVKQLLRH------QLLPDDDLGPLYDLLIDD--PPEIRRAIGELVYD 422 (1132)
Q Consensus 364 RlVeM~~D~--------D~~Vav~AI~Ll~~l~~~------~~L~~ed~~~V~~Lvfd~--~~~Vr~AAg~fv~~ 422 (1132)
+||.+.... ..++.+.|+..|..|... -+++..-+..+..|+.+. .+.+.++|+..++.
T Consensus 399 ~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~n 473 (584)
T 3l6x_A 399 NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473 (584)
T ss_dssp HHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 999998533 357888999988777643 133444456888888875 88999999988765
No 72
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=52.68 E-value=64 Score=37.07 Aligned_cols=126 Identities=20% Similarity=0.189 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHH-HhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccC
Q 001174 294 IRMSCIQSLGVW-ILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDI 372 (1132)
Q Consensus 294 IR~~Ci~eLG~W-i~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~ 372 (1132)
.+..++..+..- +...|+.+ +.||.++.=.-+|++.+||.-++.-|...+.. +.++ ..+--+.|..|..|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----~~el-~~~~l~~L~~LL~d~ 112 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----DIEL-LLKLIANLNMLLRDE 112 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGG-HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhccCHHHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHcCC
Confidence 466666666664 33567533 77999999889999999999999999999863 2222 244555677777899
Q ss_pred chhHHHHHHHHHHHHHhcC---CCC-C---CChh-----------hHHhhhcCCChHHHHHHHHHHHHHHHHh
Q 001174 373 DVSVAVCAIGLVKQLLRHQ---LLP-D---DDLG-----------PLYDLLIDDPPEIRRAIGELVYDHLIAQ 427 (1132)
Q Consensus 373 D~~Vav~AI~Ll~~l~~~~---~L~-~---ed~~-----------~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~ 427 (1132)
|..|.-.+|...+.|++.- +.. + +.++ .|..++-..+..||-.|.+|+-.-...+
T Consensus 113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999988741 111 1 1122 4556555678899999999975544443
No 73
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=49.32 E-value=92 Score=39.08 Aligned_cols=132 Identities=10% Similarity=0.087 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHhh
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD-NVPTLGLFTERFSNRMIE 367 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L~lFt~RFk~RlVe 367 (1132)
++.++..+...++..+..++..|.. +..+.++-|.+.-..-..=+..+.++...|+..+ ..+.+..+.+.+-..+++
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~ 777 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLT 777 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 3566666667888888888877654 4556677776654222223344555655565543 334566666777778777
Q ss_pred hcc-c--CchhHHHHHHHHHHHHHhc---CCCCCCC-hhhHHh----hhcCCChHHHHHHHHHHHH
Q 001174 368 LAD-D--IDVSVAVCAIGLVKQLLRH---QLLPDDD-LGPLYD----LLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 368 M~~-D--~D~~Vav~AI~Ll~~l~~~---~~L~~ed-~~~V~~----Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
|.. | .+++|+...+.++..+.++ .++++.. +..|.. .+-+.++.+.+++..|+.+
T Consensus 778 ~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~ 843 (963)
T 2x19_B 778 LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTE 843 (963)
T ss_dssp HHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 763 3 4699999999999999986 3554444 554433 3336788888888888764
No 74
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=48.56 E-value=5.5e+02 Score=33.04 Aligned_cols=149 Identities=9% Similarity=0.108 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001174 162 KNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQL 241 (1132)
Q Consensus 162 K~Fr~n~~eF~~~Lv~~~~~~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~l~~~~~~~qRQl 241 (1132)
+.++..++.-+..++...- ..-+ +.+++.+++.+ .+. .+.+..+|.+.+.|.+-....+. .++
T Consensus 114 ~~i~nKLa~~la~I~~~~~-p~~W-p~~l~dL~~~l----~~~-----~~~~~~~L~iL~~L~EEV~~~~~------~~l 176 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEW-PQNW-PEFIPELIGSS----SSS-----VNVCENNMIVLKLLSEEVFDFSA------EQM 176 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTTC-TTHHHHHHHHT----TTC-----HHHHHHHHHHHHHHHHHHHTSCT------TTS
T ss_pred HHHHHHHHHHHHHHHHHhC-hhhc-hHHHHHHHHHh----cCC-----HHHHHHHHHHHHHHHHHHHHhhh------ccc
Confidence 3455556666666554431 1111 23555555444 222 13467778888777663222110 001
Q ss_pred HHHHcccCCCccHHHHHHHHHHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHhhCcc-ccccchhhh
Q 001174 242 NAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPS-FFLQDLYLK 320 (1132)
Q Consensus 242 eaEk~K~~~~~r~e~l~~~~~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~-~FL~d~YLK 320 (1132)
.. .|-..+++ .+..+...+-+++..+... ...|++...|++.|+.|+.--|- .+.++..+.
T Consensus 177 ~~--------~r~~~lk~---~l~~~~~~I~~ll~~iL~~-------~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~ 238 (1023)
T 4hat_C 177 TQ--------AKALHLKN---SMSKEFEQIFKLCFQVLEQ-------GASSSLIVATLESLLRYLHWIPYRYIYETNILE 238 (1023)
T ss_dssp CH--------HHHHHHHH---HHHHHHHHHHHHHHHHHHH-------CSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHH
T ss_pred hH--------HHHHHHHH---HHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHH
Confidence 11 11222222 2334455666666666653 35788999999999999987664 456777777
Q ss_pred hhh-hhcCCCChhHHHHHHHHHHhhhhc
Q 001174 321 YLG-WTLNDKSASVRKSSVLALQNLYEV 347 (1132)
Q Consensus 321 YlG-W~L~Dk~~~VR~~~L~aL~~Ly~~ 347 (1132)
.+. -.|+ +++.|..|+..|..+.+.
T Consensus 239 ~l~~~~L~--~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 239 LLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp HHHTHHHH--SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHcc
Confidence 776 6664 678999999999999863
No 75
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=48.10 E-value=25 Score=44.63 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC--------C-cccHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD--------N-VPTLGLFTERF 361 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~--------~-~~~L~lFt~RF 361 (1132)
.|-+|..++..||.|-...+..++.+ .|..+-=.|.|.+..||..|..+|..+.+..+ . ...+..+....
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~-~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l 549 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIE-LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL 549 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHH-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH
Confidence 89999999999998877655444443 34455556789999999999999999886422 1 23355566666
Q ss_pred HHHHhhhcccC--------chhHHHHHHHHHHHHH
Q 001174 362 SNRMIELADDI--------DVSVAVCAIGLVKQLL 388 (1132)
Q Consensus 362 k~RlVeM~~D~--------D~~Vav~AI~Ll~~l~ 388 (1132)
-.+|+.+.... +.+....||.-+..-.
T Consensus 550 l~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 550 LKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp HHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence 66666666322 4555566665444434
No 76
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=43.02 E-value=52 Score=41.54 Aligned_cols=94 Identities=15% Similarity=0.286 Sum_probs=63.4
Q ss_pred CCChhHHHHHHHHHH---HHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHH
Q 001174 289 DIDPNIRMSCIQSLG---VWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRM 365 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG---~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rl 365 (1132)
|..|.+|..++..|| .|+...|. |+. .-|.+|--.| | +.|+..|..+|.+|-+. ....|..+..-+-..+
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNAC 589 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHH
Confidence 778999999998888 67776663 443 3456666666 4 78999999999999853 2345666666666677
Q ss_pred hhhcc--cCchhHHHHHHHHHHHHHh
Q 001174 366 IELAD--DIDVSVAVCAIGLVKQLLR 389 (1132)
Q Consensus 366 VeM~~--D~D~~Vav~AI~Ll~~l~~ 389 (1132)
.++.. +.+..+...+++-+..+..
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 77663 2566677666666666554
No 77
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=42.70 E-value=50 Score=41.57 Aligned_cols=141 Identities=10% Similarity=0.049 Sum_probs=100.0
Q ss_pred ceEeccccCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHH-H
Q 001174 281 GLFVHRYRDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG-L 356 (1132)
Q Consensus 281 ~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~-l 356 (1132)
..||+=-+.-+|+||..++..|+.-- ..+ ...++..-++.|-.+|.+....+|..+..+|.+|-...+...... .
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 45666666778999999999999775 333 346677889999999999999999999999999864322110000 0
Q ss_pred HHHHHHHHHhhhcc-cCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001174 357 FTERFSNRMIELAD-DIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1132)
Q Consensus 357 Ft~RFk~RlVeM~~-D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1132)
-..-.-+.|+++.. |.+......|+..|..|.... +++..-+..+..|+++.++.|+++|...+.+
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 01125678888874 545455567777777776642 2333346688889999999999999998875
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=42.34 E-value=1.2e+02 Score=38.73 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=77.3
Q ss_pred CCChhHHHHHHHHHHHHHhhCcccc---------ccchhhhhhhh----------------------hcCCCChhHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFF---------LQDLYLKYLGW----------------------TLNDKSASVRKSS 337 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~F---------L~d~YLKYlGW----------------------~L~Dk~~~VR~~~ 337 (1132)
|...+||..+...||.-+..-|+.. .++.++||-+- +.+|.+..||..+
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHH
Confidence 5677899998889995444334321 24667777531 2457888888888
Q ss_pred HHHHHhh-hhcCCCcccHHHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHH
Q 001174 338 VLALQNL-YEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRA 415 (1132)
Q Consensus 338 L~aL~~L-y~~~~~~~~L~lFt~RFk~RlVeM~-~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~~~~Vr~A 415 (1132)
+-+|.-+ +++++.+ +|++++. .+.|+.||-.|+-.+..+.- |-=.++=++.+-.+.-|.+.-||++
T Consensus 599 ViaLGlI~~g~~e~v-----------~rlv~~L~~~~d~~VR~gAalALGli~a-Gn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 599 VIALGFVLLRDYTTV-----------PRIVQLLSKSHNAHVRCGTAFALGIACA-GKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HHHHHHHTSSSCSSH-----------HHHTTTGGGCSCHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhhccCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHccCCCHHHHHH
Confidence 8888765 4554432 3666644 57788888887777766653 2112233556677777888888887
Q ss_pred HHHHH
Q 001174 416 IGELV 420 (1132)
Q Consensus 416 Ag~fv 420 (1132)
|..-+
T Consensus 667 Ai~AL 671 (963)
T 4ady_A 667 AMIAL 671 (963)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 79
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.31 E-value=31 Score=34.85 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHHHHH
Q 001174 357 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVYDHL 424 (1132)
Q Consensus 357 Ft~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~~~l 424 (1132)
|-..|-.++|++++|.....+..+..||..|.. ++|+.+++..=+..++. +-|.+-.-.|+|+...+
T Consensus 41 ~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav 114 (165)
T 2rg8_A 41 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 114 (165)
T ss_dssp GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHH
Confidence 555677799999999999999999999999965 99999988655544442 45666677778865433
No 80
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=38.15 E-value=23 Score=45.42 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCcccccc------chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC---cccHHHHHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQ------DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN---VPTLGLFTE 359 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~------d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~---~~~L~lFt~ 359 (1132)
+-.|++|..++.-|+.-+..+|..|+. ...+....|++.-+.+.+...+++.|..|+.+-.. ......|.+
T Consensus 815 ~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~ 894 (1049)
T 3m1i_C 815 TEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHK 894 (1049)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 448999999999999999999999874 34677899999999999999999999999865221 123455666
Q ss_pred HHHHHHhhhc
Q 001174 360 RFSNRMIELA 369 (1132)
Q Consensus 360 RFk~RlVeM~ 369 (1132)
.|-..|+...
T Consensus 895 ~~~~~l~~~~ 904 (1049)
T 3m1i_C 895 NYFFIFVSET 904 (1049)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=37.91 E-value=1.1e+02 Score=39.06 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM 368 (1132)
|.+.++|...+.+||.-...-| ....+.++-++.+.++.||..+.-+|-.+..-......+ +-|..|
T Consensus 589 d~~d~VRraAViaLGlI~~g~~-----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ai--------d~L~~L 655 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDY-----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI--------DVLDPL 655 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSC-----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHH--------HHHHHH
T ss_pred CCcHHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHH--------HHHHHH
Confidence 6788999999999995444444 346788888889999999999999999887432221111 133445
Q ss_pred cccCchhHHHHHHHHHHHHHhc
Q 001174 369 ADDIDVSVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 369 ~~D~D~~Vav~AI~Ll~~l~~~ 390 (1132)
..|.|..||..||--|..+..-
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTT
T ss_pred ccCCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999888877654
No 82
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=34.29 E-value=82 Score=38.26 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=70.3
Q ss_pred EeccccC-----CChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHH
Q 001174 283 FVHRYRD-----IDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLF 357 (1132)
Q Consensus 283 FvhRyRD-----v~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lF 357 (1132)
-.-|+-| |.+=||-.|-+.||.- .-.|+.| .-|..+--.+..+.=+||...|-+|.-+ .++...
T Consensus 228 ALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~---~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~---- 296 (800)
T 3oc3_A 228 VTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN---DIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED---- 296 (800)
T ss_dssp HHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC---CHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC----
T ss_pred HhccccccccCeeeeehHHHHHHHHHHH-HhCChhH---HHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH----
Confidence 3455555 5556999999999986 6666651 1222222234777788999999999877 344443
Q ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc
Q 001174 358 TERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI 406 (1132)
Q Consensus 358 t~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvf 406 (1132)
..++.+-++.--.|.|.+|+..|...|.-+. .++.++.|...+|
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-----~p~~l~~LL~iLW 340 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-----ITDSLDLVLEKCW 340 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-----CSSTHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-----chhhHHHHHHHHH
Confidence 3444444444446999999888888776666 4556666666655
No 83
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.14 E-value=60 Score=32.34 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhcccC-chhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHH
Q 001174 356 LFTERFSNRMIELADDI-DVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVY 421 (1132)
Q Consensus 356 lFt~RFk~RlVeM~~D~-D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~ 421 (1132)
.|-..|-.+.|.|++|+ +...+....+||..|.+.++|+.+++..=+.-|++ +-|....-.|.|+.
T Consensus 39 ~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 39 HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHH
Confidence 56677888999999988 57889999999999999999999887654444442 34555566666654
No 84
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=32.98 E-value=54 Score=41.20 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=58.0
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchh-----hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHH
Q 001174 291 DPNIRMSCIQSLGVWILSYPSFFLQDLY-----LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRM 365 (1132)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-----LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rl 365 (1132)
.|++|..++.-|+.-+..+|..|+.+.. +..+.|.|...+..|-..|+..|..+.......+.+..|...|-..|
T Consensus 786 ~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l 865 (963)
T 2x19_B 786 HPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRML 865 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHH
T ss_pred CchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 7999999999999999999999986554 44679999999999999999999999865322233444433333333
Q ss_pred h
Q 001174 366 I 366 (1132)
Q Consensus 366 V 366 (1132)
+
T Consensus 866 ~ 866 (963)
T 2x19_B 866 L 866 (963)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=32.93 E-value=1e+02 Score=35.50 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=73.3
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC------CC
Q 001174 320 KYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ------LL 393 (1132)
Q Consensus 320 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L 393 (1132)
.-+-++|...+++++..++.+|..|-...+.. +......-.-+.||.+....+.+|...|+..|..|.... +.
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34556677788999999999999986433221 222233445678999998888999999999999887641 22
Q ss_pred CCCChhhHHhhhc-CCChHHHHHHHHHHHH
Q 001174 394 PDDDLGPLYDLLI-DDPPEIRRAIGELVYD 422 (1132)
Q Consensus 394 ~~ed~~~V~~Lvf-d~~~~Vr~AAg~fv~~ 422 (1132)
+..-+..+.+++- +.++.++..|+..+..
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~n 113 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWN 113 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3334557778887 7788988888877654
No 86
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=30.00 E-value=84 Score=39.58 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---cccc-chhhhhhhhhcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHHH--HHH
Q 001174 289 DIDPNIRMSCIQSLGVWILSYPS---FFLQ-DLYLKYLGWTLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLFT--ERF 361 (1132)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~-d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lFt--~RF 361 (1132)
+-.+.||..+.+.|+.-+. .|+ .|.+ ..-+++|--+|...+..+|.++..+|..|-. +++ ....+. ..+
T Consensus 634 s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~---~~~~ii~~~g~ 709 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK---CCEKILAIASW 709 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH---HHHHHHTSTTH
T ss_pred CCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH---HHHHHHHHcCC
Confidence 4568999999999997553 333 3554 5678898888999999999999999999976 332 223333 467
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCC---ChHHHHHHHHHHHH
Q 001174 362 SNRMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDD---PPEIRRAIGELVYD 422 (1132)
Q Consensus 362 k~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~------~L~~ed~~~V~~Lvfd~---~~~Vr~AAg~fv~~ 422 (1132)
-+.|+.|+...|.+|+..|+..+..|..++ +.+..-++.+..++-.. ++.|...|.+-+..
T Consensus 710 I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 889999999999999999999999988753 22333334555554333 57777777766543
No 87
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.40 E-value=76 Score=30.59 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhcccCc-hhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHH
Q 001174 356 LFTERFSNRMIELADDID-VSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELV 420 (1132)
Q Consensus 356 lFt~RFk~RlVeM~~D~D-~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv 420 (1132)
.|-..|-.+.|.|+.|+. ...+....+||..+.+.|+++.+++..=+.-+++ +-|....-.|+|+
T Consensus 37 ~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v 109 (129)
T 2nsz_A 37 HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 109 (129)
T ss_dssp GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHH
Confidence 466677789999999886 4789999999999999999998887544433332 2344444455554
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=27.79 E-value=1.9e+02 Score=36.32 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHh--hCccccccchhhhhhhhhc----------------CCCChhHHHHHHHHHHhhhhcCCCcccH
Q 001174 293 NIRMSCIQSLGVWIL--SYPSFFLQDLYLKYLGWTL----------------NDKSASVRKSSVLALQNLYEVDDNVPTL 354 (1132)
Q Consensus 293 ~IR~~Ci~eLG~Wi~--~yP~~FL~d~YLKYlGW~L----------------~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L 354 (1132)
+++..+++.++.|+. ..|.. .++..+.++.- | ++.++++|..++..|..+...++....+
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred hHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 799999999999998 46777 66667766554 4 2467899999999999999764422223
Q ss_pred HHHHHHHHHHHhhh------c-ccCch---hHHHHHHHHHHHHHhc
Q 001174 355 GLFTERFSNRMIEL------A-DDIDV---SVAVCAIGLVKQLLRH 390 (1132)
Q Consensus 355 ~lFt~RFk~RlVeM------~-~D~D~---~Vav~AI~Ll~~l~~~ 390 (1132)
..+. .+-+.++++ + .+.|. +++....+++..+.+.
T Consensus 282 ~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 282 KTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 3332 233444442 2 44554 7777778887777643
No 89
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.28 E-value=59 Score=36.16 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHH
Q 001174 357 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVY 421 (1132)
Q Consensus 357 Ft~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~ 421 (1132)
|-..|-.++|++++|....-+..+..||..|. .++|+.+++..=+..++. +-|.+..-.|.|+.
T Consensus 34 ~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~ldDl~lD~P~a~~~la~fla 104 (307)
T 2zu6_B 34 MKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIA 104 (307)
T ss_dssp GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhHhcccccchHHHHHHHHH
Confidence 55556779999999999999999999999998 489998887654444431 23444444555543
No 90
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.28 E-value=59 Score=37.01 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHHHHH
Q 001174 358 TERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVYDHL 424 (1132)
Q Consensus 358 t~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~~~l 424 (1132)
...|-.++|++++|....-+..+..||..|.. ++|+.+++..=+..++. +-|.+-.-.|.|+...+
T Consensus 86 ~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV 158 (358)
T 3eiq_C 86 KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 158 (358)
T ss_dssp GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHH
Confidence 45577799999999999999999999999995 99999988766655553 24555566666665433
No 91
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=24.09 E-value=1.1e+02 Score=39.26 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcceEeccccCCChhHHHHHHHHHHH---HHhhCccccccchhhhhhhh--hcCCCChhHHHHHHHHHHhh
Q 001174 270 DLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGV---WILSYPSFFLQDLYLKYLGW--TLNDKSASVRKSSVLALQNL 344 (1132)
Q Consensus 270 ~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~---Wi~~yP~~FL~d~YLKYlGW--~L~Dk~~~VR~~~L~aL~~L 344 (1132)
.+.+++..+.++- + -.|-.|.||..|++-+|. |+..+|+++ +.-|.||-- .++|++..||..|-.++.++
T Consensus 490 ~l~~ll~~ll~s~-i--~~~~hp~V~~~~~~~l~rys~~~~~~~~~l--~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 490 VLSQILALVTTSQ-V--CRHPHPLVQLLYMEILVRYASFFDYESAAI--PALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp HHHHHHHHHHHSS-T--TTCCCHHHHHHHHHHHHHTGGGGGTCCTTH--HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-C--CCCCCHHHHHHHHHHHHHHHHHHhcCchhH--HHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 3556666655531 1 136789999999999995 888887533 345777777 88899999999999999999
Q ss_pred hhc--CCCcccHHHHHHHHHH
Q 001174 345 YEV--DDNVPTLGLFTERFSN 363 (1132)
Q Consensus 345 y~~--~~~~~~L~lFt~RFk~ 363 (1132)
.+. +.+.+-+..+.+.+.+
T Consensus 565 ~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 565 VKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp HHHTTTTCSSSHHHHHHHTTG
T ss_pred HHHhhHHhhhHHHHHHHHHHH
Confidence 863 2344555666665554
No 92
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=22.92 E-value=4.9e+02 Score=27.89 Aligned_cols=104 Identities=15% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh-hcccCchhHH
Q 001174 299 IQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE-LADDIDVSVA 377 (1132)
Q Consensus 299 i~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlVe-M~~D~D~~Va 377 (1132)
...--.|+..++ .+..+..+-=+..|.+-+||.-++..|..+ . -..-.-+-|.+ .+.|....|+
T Consensus 57 ~~~a~~~~~~~~----~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----------~~~~~L~~ir~~va~D~~WrVr 121 (240)
T 3l9t_A 57 EQRALTDYKSND----GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----------KDKEILIFMRDEVSKDNNWRVQ 121 (240)
T ss_dssp HHHHHHHHHHSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----------TSHHHHHHHHHTGGGCSCHHHH
T ss_pred HHHHHHHHHhCC----HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----------CcHHHHHHHHHHhCCCCCccHH
Q ss_pred HHHHHHHHHHHh-cCCCCCCChhhHHhhhcCCChHHHHHHHHH
Q 001174 378 VCAIGLVKQLLR-HQLLPDDDLGPLYDLLIDDPPEIRRAIGEL 419 (1132)
Q Consensus 378 v~AI~Ll~~l~~-~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~f 419 (1132)
..+-..+..+.. .+ .+.-+..+-...-|+++-||++|.+.
T Consensus 122 e~lA~a~~~~~~~~~--pe~~l~~~~~W~~d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 122 EVLAKAFDEFCKKIE--YKKALPIIDEWLKSSNLHTRRAATEG 162 (240)
T ss_dssp HHHHHHHHHHHHHHC--TTTTHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHhcCCCHHHHHHHHHh
No 93
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=22.87 E-value=1.5e+02 Score=37.18 Aligned_cols=115 Identities=13% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc-ccHHHHH--H---HHHHHHh
Q 001174 293 NIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV-PTLGLFT--E---RFSNRMI 366 (1132)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~-~~L~lFt--~---RFk~RlV 366 (1132)
++|..-+.+-|.| ..|--.|.+.+..||.++...|..|-.+++.+ .++..+. . ||+ -||
T Consensus 596 ~~r~~Ii~~~ga~--------------~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~-lLV 660 (778)
T 3opb_A 596 EVCKHIVSTKVYW--------------STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFN-ILV 660 (778)
T ss_dssp HHHHHHHHSHHHH--------------HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHH-HHH
T ss_pred HHHHHHHHhcCHH--------------HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHH-HHH
Q ss_pred hhcccCchhHHHHHHHHHHHHHhc------CCCCC-CChhhHHhhhcC--CChHHHHHHHHHHHH
Q 001174 367 ELADDIDVSVAVCAIGLVKQLLRH------QLLPD-DDLGPLYDLLID--DPPEIRRAIGELVYD 422 (1132)
Q Consensus 367 eM~~D~D~~Vav~AI~Ll~~l~~~------~~L~~-ed~~~V~~Lvfd--~~~~Vr~AAg~fv~~ 422 (1132)
.++...|.+++..|...+..+-.. .+++. +-++.+..++-+ +++.+++-++-+++.
T Consensus 661 ~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 661 KLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725 (778)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHH
No 94
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.58 E-value=90 Score=35.44 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCC-------ChHHHHHHHHHHH
Q 001174 356 LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDD-------PPEIRRAIGELVY 421 (1132)
Q Consensus 356 lFt~RFk~RlVeM~~D~D~~Vav~AI~Ll~~l~~~~~L~~ed~~~V~~Lvfd~-------~~~Vr~AAg~fv~ 421 (1132)
+|-..|-.++|+|++|.....+..+.+||..|.+.++|+.+++..=+..+++. -|.+-.-.|+|+.
T Consensus 43 ~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~a 115 (364)
T 3l6a_A 43 HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAA 115 (364)
T ss_dssp GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhccccccHHHHHHHHHH
Confidence 34445777899999999999999999999999999999999887666655532 4444455555553
No 95
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=21.84 E-value=38 Score=33.79 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=57.6
Q ss_pred CCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 001174 182 GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRL 261 (1132)
Q Consensus 182 ~~LyD~~Lmd~l~~wL~~LS~S~vR~fRHTATlaaL~l~taLv~va~~l~~~~~~~qRQleaEk~K~~~~~r~e~l~~~~ 261 (1132)
..+.|..++.-+..||-.|.+-..- ++.|-+++..+...+..+.+ .|...
T Consensus 55 ~~~ld~giL~~l~~WL~PLpDgsLP---------~~~Ir~~lL~~L~~lPI~~e--------------------~Lk~S- 104 (145)
T 2xpp_A 55 ESLLDEGILDEIKGWLEPLPDKSMP---------NIKIRKRLLDVLKTMKIHKE--------------------HLVTS- 104 (145)
T ss_dssp HHHHHTTHHHHHHHHHSCCTTSCCC---------CHHHHHHHHHHHHTSCCCHH--------------------HHHHH-
T ss_pred HHHHHcCHHHHHHHHhCcCCCCCCC---------CHHHHHHHHHHHHHCCCCHH--------------------HhhcC-
Confidence 4456888999999999999987655 46677777776555543211 11100
Q ss_pred HHHHhhHHHHHHHHHHhhcceEeccccCCChhHHHHHHHHHHHHHh
Q 001174 262 SMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWIL 307 (1132)
Q Consensus 262 ~e~~~~~~~i~~~l~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~ 307 (1132)
-|-..+ +|..+..+.-|+||..|-.-++.|.+
T Consensus 105 --------glGkvv------~~l~k~~~et~~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 105 --------GVGKIV------YFYSINPKESKEVRASAKALVQKWTN 136 (145)
T ss_dssp --------CHHHHH------HHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------CCCcch------hhhhcCCccCHHHHHHHHHHHHHHHH
Confidence 111111 68899999999999999999999965
Done!