BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001176
         (1132 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
 pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
          Length = 577

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 29/268 (10%)

Query: 411 CVWG----PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
            VWG    PDG  +  A     V L+  N  G+L Q L    H   V  +AF+ P+ Q  
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVRGVAFS-PDGQ-T 235

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           I +  DDK +K+W+   G+   T  GH + V  V    +   Q I S + D  +K W  +
Sbjct: 236 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVA--FRPDGQTIASASDDKTVKLWNRN 292

Query: 527 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
             L   +   +   W   +A+S DG  + S    K     +  WN   G   +T +G   
Sbjct: 293 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKT----VKLWNR-NGQHLQTLTGHSS 345

Query: 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFNKEGSLL 644
              GV  F        +A D+  +K W+  N  +L T+    G  +S R + F+ +G  +
Sbjct: 346 SVWGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTI 400

Query: 645 AVTTSDNGIKILANSDGVRLLRMLEGRA 672
           A  + D  +K L N +G +LL+ L G +
Sbjct: 401 ASASDDKTVK-LWNRNG-QLLQTLTGHS 426



 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 21/235 (8%)

Query: 440 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 499
           +++   ++AH   V  +AF+ P+ Q  I +  DDK +K+W+   G+   T  GH + V+ 
Sbjct: 6   VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 62

Query: 500 VCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557
           V        Q I S + D  +K W  +   L +   + +       +A+S DG  + S  
Sbjct: 63  VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASAS 117

Query: 558 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 617
             K     +  WN   G + +T +G      GV  F        +A D+  +K W+  N 
Sbjct: 118 DDKT----VKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR-NG 170

Query: 618 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 672
            +L T+   G   +   + F+ +G  +A  + D  +K L N +G +LL+ L G +
Sbjct: 171 QLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNG-QLLQTLTGHS 221



 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 20/209 (9%)

Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
           SV    + PDG  +  A     V L+  N  G+L Q L    H   V  +AF+ P+ Q  
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVWGVAFS-PDDQ-T 440

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           I +  DDK +K+W+   G+   T  GH + V  V        Q I S + D  +K W  +
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 497

Query: 527 --YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 584
              L +   + +       +A+S DG  + S    K     +  WN   G + +T +G  
Sbjct: 498 GQLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLTGHS 549

Query: 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFWD 613
               GV  F        +A  +  +K W+
Sbjct: 550 SSVWGVA-FSPDGQTIASASSDKTVKLWN 577



 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 837 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 895
             S   +A S +   + SAS  K V L+N    +++        +   +AF P D   IA
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIA 524

Query: 896 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
              +D +V+++N R  ++   L GH + + G+AFSP    + S+ +D  + +W
Sbjct: 525 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576



 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 837 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 895
             S   +A S +   + SAS  K V L+N    +++        +   +AF P D   IA
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRP-DGQTIA 278

Query: 896 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
              +D +V+++N R  ++   L GH + + G+AFSP    + S+  D  + +W
Sbjct: 279 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330



 Score = 43.1 bits (100), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 837 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 895
             S   +A S +   + SAS  K V L+N    +++        +   +AF P D+  IA
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIA 442

Query: 896 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 955
              +D +V+++N R  ++   L GH + + G+AFSP    + S+  D  + +W+ +    
Sbjct: 443 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---- 497

Query: 956 LKSRFIQAPAGRQSPLVG 973
              + +Q   G  S + G
Sbjct: 498 --GQLLQTLTGHSSSVRG 513



 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 831 NESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 889
           N  +    S   +A S +   + SAS  K V L+N    +++        +   +AF P 
Sbjct: 10  NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP- 67

Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
           D   IA   +D +V+++N R  ++   L GH + + G+AFSP    + S+  D  + +W+
Sbjct: 68  DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126

Query: 950 IDKWEKLKSRFIQAPAGRQSPLVG 973
            +       + +Q   G  S + G
Sbjct: 127 RN------GQLLQTLTGHSSSVWG 144



 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 17/224 (7%)

Query: 843  IALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901
            +A S +   + SAS  K V L+N     + T+      +   +AF P D   IA   +D 
Sbjct: 309  VAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSVWGVAFSP-DGQTIASASDDK 366

Query: 902  SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 961
            +V+++N R  ++   L GH + + G+AFSP    + S+  D  + +W+ +       + +
Sbjct: 367  TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLL 419

Query: 962  QAPAGRQSPLVGETKVQFH-NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSA 1020
            Q   G  S + G   V F  +DQT      +  + +++   +  ++ +      + +   
Sbjct: 420  QTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH---SSSVRGV 473

Query: 1021 IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1064
             +S DG  + +   D  + +++      +   G S+ +   A S
Sbjct: 474  AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 517



 Score = 42.0 bits (97), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 843 IALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901
           +A S +   + SAS  K V L+N    +++        +   +AF P D   IA   +D 
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDK 202

Query: 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
           +V+++N R  ++   L GH + + G+AFSP    + S+  D  + +W
Sbjct: 203 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248


>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
 pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
          Length = 334

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)

Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
           +V+   + P+G  L  + +  ++ ++  Y+  G+  +   I  H  G++D+A++  +  L
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 102

Query: 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 525
             V+  DDK +K+WDV +G+   T +GH   V+  C +       I S + D  ++ W  
Sbjct: 103 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 158

Query: 526 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
                     A  +  + + ++ DG+ + S  +S +G   +  W+ + G   +T      
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 214

Query: 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645
             +  V+F       LAA  +  +K WD      L T              F+  G    
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274

Query: 646 VTTSDNGIKILANSDGVRLLRMLEGR 671
           V+ S++ +  + N     +++ L+G 
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGH 300



 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 196 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 312

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 313 ENIIASAALENDKTIKLWKSD 333



 Score = 40.4 bits (93), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 98   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VVHESQISVYDSKL-ECSRSW 1007
            +   + LK+     PA    P+   + V F+ D + ++   ++    ++D+   +C ++ 
Sbjct: 158  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209

Query: 1008 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
               D    P+S   +S +G  + A   D  + ++D
Sbjct: 210  IDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 242



 Score = 40.0 bits (92), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 53/226 (23%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
             +  H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V   
Sbjct: 39  FTLAGHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--- 93

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
                                                    A+S+D   L S    K   
Sbjct: 94  -----------------------------------------AWSSDSNLLVSASDDKT-- 110

Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623
             L  W+ S G   +T  G          F+   N  ++   +  ++ WD+     L T+
Sbjct: 111 --LKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167

Query: 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
            A    P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 168 PAHSD-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211



 Score = 38.9 bits (89), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 28/172 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 47   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 106  SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 153

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFD 1042
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D
Sbjct: 154  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199



 Score = 34.3 bits (77), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)

Query: 336 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 383
            ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P           
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179

Query: 384 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428
                           ++WD   AS      L++D    V+   + P+G  +  A   + 
Sbjct: 180 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 476
           + L+ Y+    L+ +                H N++ CI            V+  +D ++
Sbjct: 238 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283

Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
            +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 333



 Score = 30.0 bits (66), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 22/168 (13%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 37   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 88

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 89   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 141

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T +   +  P+   P  AV  N    L+++
Sbjct: 142  NLIVSGSFDESVRIWDVKTGKCL-KTLPAHSDPVSAVHFNRDGSLIVS 188


>pdb|2GNQ|A Chain A, Structure Of Wdr5
          Length = 336

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)

Query: 407 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 465
           +V+   + P+G  L  + +  ++ ++  Y+  G+  +   I  H  G++D+A++  +  L
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 104

Query: 466 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 525
             V+  DDK +K+WDV +G+   T +GH   V+  C +       I S + D  ++ W  
Sbjct: 105 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 160

Query: 526 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
                     A  +  + + ++ DG+ + S  +S +G   +  W+ + G   +T      
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 216

Query: 586 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 645
             +  V+F       LAA  +  +K WD      L T              F+  G    
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276

Query: 646 VTTSDNGIKILANSDGVRLLRMLEGR 671
           V+ S++ +  + N     +++ L+G 
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGH 302



 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 198 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 314

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 315 ENIIASAALENDKTIKLWKSD 335



 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 100  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VVHESQISVYDSKL-ECSRSW 1007
            +   + LK+     PA    P+   + V F+ D + ++   ++    ++D+   +C ++ 
Sbjct: 160  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211

Query: 1008 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
               D    P+S   +S +G  + A   D  + ++D
Sbjct: 212  IDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 244



 Score = 40.0 bits (92), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 53/226 (23%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
             +  H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V   
Sbjct: 41  FTLAGHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--- 95

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
                                                    A+S+D   L S    K   
Sbjct: 96  -----------------------------------------AWSSDSNLLVSASDDKT-- 112

Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623
             L  W+ S G   +T  G          F+   N  ++   +  ++ WD+     L T+
Sbjct: 113 --LKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169

Query: 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
            A    P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 170 PAHSD-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213



 Score = 38.9 bits (89), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 28/172 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 49   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 108  SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 155

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFD 1042
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D
Sbjct: 156  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201



 Score = 34.3 bits (77), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)

Query: 336 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 383
            ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P           
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181

Query: 384 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428
                           ++WD   AS      L++D    V+   + P+G  +  A   + 
Sbjct: 182 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 476
           + L+ Y+    L+ +                H N++ CI            V+  +D ++
Sbjct: 240 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285

Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
            +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 335



 Score = 29.6 bits (65), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 22/168 (13%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 39   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 90

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 91   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 143

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T +   +  P+   P  AV  N    L+++
Sbjct: 144  NLIVSGSFDESVRIWDVKTGKCL-KTLPAHSDPVSAVHFNRDGSLIVS 190


>pdb|2H9L|A Chain A, Wdr5delta23
 pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
          Length = 329

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH   V+  C +  
Sbjct: 78  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 133

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 191

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 192 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 249

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671
                      F+  G    V+ S++ +  + N     +++ L+G 
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295



 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 191 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 307

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 308 ENIIASAALENDKTIKLWKSD 328



 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 25/209 (11%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 93   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V   ++    ++D+   +C +
Sbjct: 153  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 202

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1065
            +    D    P+S   +S +G  + A   D  + ++D    + +C       + TY    
Sbjct: 203  TLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYS--KGKC-------LKTYTGHK 251

Query: 1066 NTAHPLVIAPHPSEPNQIALGMSDGAVHV 1094
            N  + +      +    I  G  D  V++
Sbjct: 252  NEKYCIFANFSVTGGKWIVSGSEDNLVYI 280



 Score = 39.3 bits (90), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 53/226 (23%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
             +  H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V   
Sbjct: 34  FTLAGHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--- 88

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
                                                    A+S+D   L S    K   
Sbjct: 89  -----------------------------------------AWSSDSNLLVSASDDKT-- 105

Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623
             L  W+ S G   +T  G     +    F+   N  ++   +  ++ WD+     L T+
Sbjct: 106 --LKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162

Query: 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
            A    P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 163 PAHSD-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206



 Score = 38.1 bits (87), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 42   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 101  SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 148

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 149  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197



 Score = 33.5 bits (75), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)

Query: 336 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 383
            ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P           
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174

Query: 384 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428
                           ++WD   AS      L++D    V+   + P+G  +  A   + 
Sbjct: 175 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 476
           + L+ Y+    L+ +                H N++ CI            V+  +D ++
Sbjct: 233 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278

Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
            +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328



 Score = 29.6 bits (65), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 22/168 (13%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 32   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 83

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 84   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 136

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T +   +  P+   P  AV  N    L+++
Sbjct: 137  NLIVSGSFDESVRIWDVKTGKCL-KTLPAHSDPVSAVHFNRDGSLIVS 183


>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll2
 pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll3
 pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll4
 pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1b
          Length = 318

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH   V+  C +  
Sbjct: 67  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 122

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671
                      F+  G    V+ S++ +  + N     +++ L+G 
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284



 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317



 Score = 40.0 bits (92), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%)

Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
           D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141

Query: 950 IDKWEKLKS 958
           +   + LK+
Sbjct: 142 VKTGKCLKT 150



 Score = 39.3 bits (90), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 53/226 (23%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
             +  H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V   
Sbjct: 23  FTLAGHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--- 77

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
                                                    A+S+D   L S    K   
Sbjct: 78  -----------------------------------------AWSSDSNLLVSASDDKT-- 94

Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623
             L  W+ S G   +T  G          F+   N  ++   +  ++ WD+     L T+
Sbjct: 95  --LKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151

Query: 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
            A    P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 152 PAHSD-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195



 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 31   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 90   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 138  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186



 Score = 33.5 bits (75), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)

Query: 336 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 383
            ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P           
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163

Query: 384 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428
                           ++WD   AS      L++D    V+   + P+G  +  A   + 
Sbjct: 164 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 476
           + L+ Y+    L+ +                H N++ CI            V+  +D ++
Sbjct: 222 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267

Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
            +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317



 Score = 29.6 bits (65), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 22/168 (13%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 21   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 72

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 73   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 125

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T +   +  P+   P  AV  N    L+++
Sbjct: 126  NLIVSGSFDESVRIWDVKTGKCL-KTLPAHSDPVSAVHFNRDGSLIVS 172


>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
          Length = 315

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH   V+  C +  
Sbjct: 64  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG 235

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671
                      F+  G    V+ S++ +  + N     +++ L+G 
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281



 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314



 Score = 39.3 bits (90), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
           D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138

Query: 950 I 950
           +
Sbjct: 139 V 139



 Score = 38.9 bits (89), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 24  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 82  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 127

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 187 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTYTGHKNEK 240



 Score = 38.5 bits (88), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 28/187 (14%)

Query: 868  FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 927
            + +M        A + + F P +   +A    D  ++I+     + +  + GH+  I+ +
Sbjct: 16   YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74

Query: 928  AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQT 984
            A+S   N LVS+  D  L +W +   + LK+            L G +   F    N Q+
Sbjct: 75   AWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQS 122

Query: 985  HLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1038
            +L+V    +  + ++D K   C ++      LPA   P+S+  ++ DG L+ +   DG  
Sbjct: 123  NLIVSGSFDESVRIWDVKTGMCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176

Query: 1039 GVFDAET 1045
             ++D  +
Sbjct: 177  RIWDTAS 183



 Score = 32.7 bits (73), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)

Query: 336 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 383
            ++TL   SN V   +F+PQ   +++ G+    + +W+V +   L   P           
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160

Query: 384 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428
                           ++WD   AS      L++D    V+   + P+G  +  A   + 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 476
           + L+ Y+    L+ +                H N++ CI            V+  +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264

Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
            +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314


>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
           Angstrom
 pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
          Length = 315

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH   V+  C +  
Sbjct: 64  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671
                      F+  G    V+ S++ +  + N     +++ L+G 
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281



 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314



 Score = 39.3 bits (90), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 890 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
           D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138

Query: 950 I 950
           +
Sbjct: 139 V 139



 Score = 38.9 bits (89), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 53/226 (23%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
             +  H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V   
Sbjct: 20  FTLAGHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--- 74

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
                                                    A+S+D   L S    K   
Sbjct: 75  -----------------------------------------AWSSDSNLLVSASDDKT-- 91

Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 623
             L  W+ S G   +T  G     +    F+   N  ++   +  ++ WD+     L T+
Sbjct: 92  --LKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148

Query: 624 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
            A    P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 149 PAHSD-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192



 Score = 38.5 bits (88), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 28/187 (14%)

Query: 868  FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 927
            + +M        A + + F P +   +A    D  ++I+     + +  + GH+  I+ +
Sbjct: 16   YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74

Query: 928  AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQT 984
            A+S   N LVS+  D  L +W +   + LK+            L G +   F    N Q+
Sbjct: 75   AWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQS 122

Query: 985  HLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1038
            +L+V    +  + ++D K   C ++      LPA   P+S+  ++ DG L+ +   DG  
Sbjct: 123  NLIVSGSFDESVRIWDVKTGMCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176

Query: 1039 GVFDAET 1045
             ++D  +
Sbjct: 177  RIWDTAS 183



 Score = 33.5 bits (75), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)

Query: 336 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 383
            ++TL   SN V   +F+PQ   +++ G+    + +W+V +   L   P           
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160

Query: 384 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428
                           ++WD   AS      L++D    V+   + P+G  +  A   + 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 476
           + L+ Y+    L+ +                H N++ CI            V+  +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264

Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
            +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314


>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
           ALLOSTERIC Inhibitor Scf-I2
 pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
           ALLOSTERIC Inhibitor Scf-I2
 pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
 pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
          Length = 464

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 29/213 (13%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
           L++  H GGV  + +AH      +V+   D+ ++VWD+  G   + FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 542
             ++I++I + + D  +  W      S  D    +D P                 G+  +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272

Query: 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 602
           +   S  G  +     S   ++ L+ W+ ++       SG   R    + +D  R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCIS 327

Query: 603 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 635
           A  +  I+ WD++N  ++ T+     L    RL
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360



 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           +  H   +    + H  K+ CI +   D  I++WD+  G   YT +GH A V  +    +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359

Query: 506 ESIQFIFSTAIDGKIKAW 523
            S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377


>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
          Length = 315

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 13/258 (5%)

Query: 415 PDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 473
           P+G  L  + +  ++ ++  Y+  G+  +   I  H  G++D+A++  +  L  V+  DD
Sbjct: 36  PNGEWLAASSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL--VSASDD 89

Query: 474 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 533
           K +K+WDV +G+   T +GH   V+  C +       I S + D  ++ W          
Sbjct: 90  KTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 147

Query: 534 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 593
             A  +  + + ++ DG+ + S  +S +G   +  W+ + G   +T        +  V+F
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNPPVSFVKF 203

Query: 594 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 653
                  LAA  +  +K WD      L T              F+  G    V+ S++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263

Query: 654 KILANSDGVRLLRMLEGR 671
             + N     +++ L+G 
Sbjct: 264 VYIWNLQTKEIVQKLQGH 281



 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314



 Score = 40.0 bits (92), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 25/217 (11%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V   ++    ++D+   +C +
Sbjct: 139  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 188

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1065
            +    D    P+S   +S +G  + A   D  + ++D    + +C       + TY    
Sbjct: 189  TLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYS--KGKC-------LKTYTGHK 237

Query: 1066 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1102
            N  + +      +    I  G  D  V++      E+
Sbjct: 238  NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274



 Score = 38.9 bits (89), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)

Query: 858  GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917
            G+ S F    + +         A + + F P +   +A    D  ++I+     + +  +
Sbjct: 6    GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTI 64

Query: 918  KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977
             GH+  I+ +A+S   N LVS+  D  L +W +   + LK+            L G +  
Sbjct: 65   SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112

Query: 978  QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1028
             F    N Q++L+V    +  + ++D K  +C ++      LPA   P+S+  ++ DG L
Sbjct: 113  VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166

Query: 1029 VYAGFCDGAIGVFDAET 1045
            + +   DG   ++D  +
Sbjct: 167  IVSSSYDGLCRIWDTAS 183



 Score = 38.1 bits (87), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 53/222 (23%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  +     DK+IK+W    G+ + T  GH+  +  V       
Sbjct: 24  GHTKAVSSVKFS-PNGEW-LAASSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567
                                                A+S+D   L S    K     L 
Sbjct: 75  -------------------------------------AWSSDSNLLVSASDDKT----LK 93

Query: 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627
            W+ S G   +T  G          F+   N  ++   +  ++ WD+     L T+ A  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152

Query: 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
             P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192



 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)

Query: 336 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 383
            ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P           
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160

Query: 384 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 428
                           ++WD   AS      L++D    V+   + P+G  +  A   + 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 476
           + L+ Y+    L+ +                H N++ CI            V+  +D ++
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264

Query: 477 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
            +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314


>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
 pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
          Length = 464

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 29/213 (13%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
           L++  H GGV  + +AH      +V+   D+ ++VWD+  G   + FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 542
             ++I++I + + D  +  W      S  D    +D P                 G+  +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272

Query: 543 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 602
           +   S  G  +     S   ++ L+ W+ ++       SG   R    + +D  R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCIS 327

Query: 603 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 635
           A  +  I+ WD++N  +  T+     L    RL
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360



 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           +  H   +    + H  K+ CI +   D  I++WD+  G   YT +GH A V  +    +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359

Query: 506 ESIQFIFSTAIDGKIKAW 523
            S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377


>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH   V+  C +  
Sbjct: 64  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671
                      F+  G    V+ S++ +  + N     +++ L+G 
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281



 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293

Query: 933 LNALVSS 939
            N + S+
Sbjct: 294 ENIIASA 300



 Score = 40.0 bits (92), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 25/209 (11%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V   ++    ++D+   +C +
Sbjct: 139  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 188

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1065
            +    D    P+S   +S +G  + A   D  + ++D    + +C       + TY    
Sbjct: 189  TLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYS--KGKC-------LKTYTGHK 237

Query: 1066 NTAHPLVIAPHPSEPNQIALGMSDGAVHV 1094
            N  + +      +    I  G  D  V++
Sbjct: 238  NEKYCIFANFSVTGGKWIVSGSEDNLVYI 266



 Score = 38.5 bits (88), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V       
Sbjct: 24  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567
                                                A+S+D   L S    K     L 
Sbjct: 75  -------------------------------------AWSSDSNLLVSASDDKT----LK 93

Query: 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627
            W+ S G   +T  G          F+   N  ++   +  ++ WD+     L T+ A  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152

Query: 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
             P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192



 Score = 38.1 bits (87), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)

Query: 858  GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917
            G+ S F    + +         A + + F P +   +A    D  ++I+     + +  +
Sbjct: 6    GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64

Query: 918  KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977
             GH+  I+ +A+S   N LVS+  D  L +W +   + LK+            L G +  
Sbjct: 65   SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112

Query: 978  QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1028
             F    N Q++L+V    +  + ++D K  +C ++      LPA   P+S+  ++ DG L
Sbjct: 113  VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166

Query: 1029 VYAGFCDGAIGVFDAET 1045
            + +   DG   ++D  +
Sbjct: 167  IVSSSYDGLCRIWDTAS 183


>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH   V+  C +  
Sbjct: 64  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 671
                      F+  G    V+ S++ +  + N     +++ L+G 
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281



 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233

Query: 875 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293

Query: 933 LNALVSS 939
            N + S+
Sbjct: 294 ENIIASA 300



 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 25/209 (11%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V   ++    ++D+   +C +
Sbjct: 139  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 188

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1065
            +    D    P+S   +S +G  + A   D  + ++D    + +C       + TY    
Sbjct: 189  TLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYS--KGKC-------LKTYTGHK 237

Query: 1066 NTAHPLVIAPHPSEPNQIALGMSDGAVHV 1094
            N  + +      +    I  G  D  V++
Sbjct: 238  NEKYCIFANFSVTGGKWIVSGSEDNLVYI 266



 Score = 38.5 bits (88), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V       
Sbjct: 24  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 567
                                                A+S+D   L S    K     L 
Sbjct: 75  -------------------------------------AWSSDSNLLVSASDDKT----LK 93

Query: 568 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 627
            W+ S G   +T  G          F+   N  ++   +  ++ WD+     L T+ A  
Sbjct: 94  IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152

Query: 628 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 669
             P S  + FN++GSL+  ++ D   +I   + G  L  +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192



 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)

Query: 858  GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 917
            G+ S F    + +         A + + F P +   +A    D  ++I+     + +  +
Sbjct: 6    GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64

Query: 918  KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 977
             GH+  I+ +A+S   N LVS+  D  L +W +   + LK+            L G +  
Sbjct: 65   SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112

Query: 978  QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1028
             F    N Q++L+V    +  + ++D K  +C ++      LPA   P+S+  ++ DG L
Sbjct: 113  VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166

Query: 1029 VYAGFCDGAIGVFDAET 1045
            + +   DG   ++D  +
Sbjct: 167  IVSSSYDGLCRIWDTAS 183


>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
           Murine Apaf-1
          Length = 1256

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 834 KPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 892
           K  E+   C A S +DSY+ + S  K V +++  T K++  +           F  + N+
Sbjct: 661 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH 720

Query: 893 II-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
           ++ A G  D  ++++++   E +  + GH N +    FSP    L S  AD  L +W +
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779



 Score = 42.0 bits (97), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)

Query: 416  DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475
            DG  L  +    ++ ++ +  TG+   ++ + AH   V D      ++   +++   D  
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQ-TGD---YVFLQAHQETVKDFRLLQDSR---LLSWSFDGT 1073

Query: 476  IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535
            +KVW+V+ GR +  F  H+  V S C    ++ +F  ST+ D   K W +D L    +  
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLHELK 1131

Query: 536  APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576
                     A+S DG  L +      GE  +  WN S+G +
Sbjct: 1132 GHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1168



 Score = 39.7 bits (91), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496
           TGE  + L+I AH   V   AF+  +    I TC  DK +K+WD   G+  +T++ H   
Sbjct: 653 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 708

Query: 497 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555
           V + C    +S   + +T + D  +K W  +    R       N      +S D   L S
Sbjct: 709 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 767

Query: 556 C 556
           C
Sbjct: 768 C 768



 Score = 38.1 bits (87), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMED 900
           C + S +   ++ A+  KV LF++ T  ++  +         +  F P D+ +  I +  
Sbjct: 810 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQ 868

Query: 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
             V+++N+         +GH + + G+ FSP  ++ +++  D  + +W   K
Sbjct: 869 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920



 Score = 37.4 bits (85), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 863 FNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921
            N  T K ++ + + P   A + A   QD   IA    D ++Q++     E    +K H+
Sbjct: 605 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 664

Query: 922 NRITGLAFSPTLNALVSSGADAQLCMW 948
           + +   AFS   + + +  AD ++ +W
Sbjct: 665 DEVLCCAFSSDDSYIATCSADKKVKIW 691



 Score = 35.8 bits (81), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
           L +  H   V    F+   ++  I +CG DK ++V+    G K    + HE  V  +C  
Sbjct: 616 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 671

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
                 +I + + D K+K W                                        
Sbjct: 672 FSSDDSYIATCSADKKVKIW---------------------------------------- 691

Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 621
                 + + G +  TY    ++ +    F    N  L A   ++F +K WD++      
Sbjct: 692 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744

Query: 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655
           T+   G   +    RF+ +  LLA  ++D  +++
Sbjct: 745 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 776



 Score = 32.3 bits (72), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 894  IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 953
            +A G ED +++I  +  + V +   GH+  +  + F+     L+SS  D+ + +W+   W
Sbjct: 983  VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039

Query: 954  EKLKSRFIQA 963
            +     F+QA
Sbjct: 1040 QTGDYVFLQA 1049



 Score = 30.8 bits (68), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 889  QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
            QD+ +++    D +V+++NV    ++     HQ  +   A S       S+ AD    +W
Sbjct: 1061 QDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119

Query: 949  SID 951
            S D
Sbjct: 1120 SFD 1122


>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
          Length = 1249

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 834 KPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 892
           K  E+   C A S +DSY+ + S  K V +++  T K++  +           F  + N+
Sbjct: 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH 713

Query: 893 II-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
           ++ A G  D  ++++++   E +  + GH N +    FSP    L S  AD  L +W +
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772



 Score = 42.0 bits (97), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)

Query: 416  DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 475
            DG  L  +    ++ ++ +  TG+   ++ + AH   V D      ++   +++   D  
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQ-TGD---YVFLQAHQETVKDFRLLQDSR---LLSWSFDGT 1066

Query: 476  IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 535
            +KVW+V+ GR +  F  H+  V S C    ++ +F  ST+ D   K W +D L    +  
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLHELK 1124

Query: 536  APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576
                     A+S DG  L +      GE  +  WN S+G +
Sbjct: 1125 GHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1161



 Score = 39.7 bits (91), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496
           TGE  + L+I AH   V   AF+  +    I TC  DK +K+WD   G+  +T++ H   
Sbjct: 646 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 701

Query: 497 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555
           V + C    +S   + +T + D  +K W  +    R       N      +S D   L S
Sbjct: 702 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760

Query: 556 C 556
           C
Sbjct: 761 C 761



 Score = 38.5 bits (88), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 842 CIALSKNDSYVMSASGGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMED 900
           C + S +   ++ A+  KV LF++ T  ++  +         +  F P D+ +  I +  
Sbjct: 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQ 861

Query: 901 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
             V+++N+         +GH + + G+ FSP  ++ +++  D  + +W   K
Sbjct: 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913



 Score = 37.4 bits (85), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 863 FNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 921
            N  T K ++ + + P   A + A   QD   IA    D ++Q++     E    +K H+
Sbjct: 598 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 657

Query: 922 NRITGLAFSPTLNALVSSGADAQLCMW 948
           + +   AFS   + + +  AD ++ +W
Sbjct: 658 DEVLCCAFSSDDSYIATCSADKKVKIW 684



 Score = 35.8 bits (81), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
           L +  H   V    F+   ++  I +CG DK ++V+    G K    + HE  V  +C  
Sbjct: 609 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 664

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 563
                 +I + + D K+K W                                        
Sbjct: 665 FSSDDSYIATCSADKKVKIW---------------------------------------- 684

Query: 564 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 621
                 + + G +  TY    ++ +    F    N  L A   ++F +K WD++      
Sbjct: 685 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737

Query: 622 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655
           T+   G   +    RF+ +  LLA  ++D  +++
Sbjct: 738 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 769



 Score = 32.3 bits (72), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 894  IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 953
            +A G ED +++I  +  + V +   GH+  +  + F+     L+SS  D+ + +W+   W
Sbjct: 976  VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032

Query: 954  EKLKSRFIQA 963
            +     F+QA
Sbjct: 1033 QTGDYVFLQA 1042



 Score = 30.8 bits (68), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 889  QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
            QD+ +++    D +V+++NV    ++     HQ  +   A S       S+ AD    +W
Sbjct: 1054 QDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112

Query: 949  SID 951
            S D
Sbjct: 1113 SFD 1115


>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 311

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 60  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 115

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 173

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 174 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 231

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 173 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 289

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 290 ENIIASAALENDKTIKLWKSD 310



 Score = 42.0 bits (97), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 75   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 135  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 184

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 185  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 219



 Score = 38.9 bits (89), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 24   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 83   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 130

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 131  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179



 Score = 38.1 bits (87), Expect = 0.031,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 20  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 78  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 123

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 183 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 236



 Score = 31.2 bits (69), Expect = 3.4,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)

Query: 337 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 384
           ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P            
Sbjct: 99  LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157

Query: 385 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429
                          ++WD   AS      L++D    V+   + P+G  +  A   + +
Sbjct: 158 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 215

Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 477
            L+ Y+    L+ +                H N++ CI            V+  +D ++ 
Sbjct: 216 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261

Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310



 Score = 29.6 bits (65), Expect = 9.3,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 14   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 65

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 66   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 118

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRC-RIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T   +C +  P+   P  AV  N    L+++
Sbjct: 119  NLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVS 165


>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
           With 2-
           Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
           5- Nitrophenyl]benzamide
          Length = 312

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 61  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 116

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 174 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 291 ENIIASAALENDKTIKLWKSD 311



 Score = 42.0 bits (97), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 136  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 185

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 186  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 220



 Score = 38.9 bits (89), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 25   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 84   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 132  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180



 Score = 38.1 bits (87), Expect = 0.032,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 21  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 79  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 124

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 184 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237



 Score = 31.2 bits (69), Expect = 3.6,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)

Query: 337 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 384
           ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P            
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158

Query: 385 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429
                          ++WD   AS      L++D    V+   + P+G  +  A   + +
Sbjct: 159 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216

Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 477
            L+ Y+    L+ +                H N++ CI            V+  +D ++ 
Sbjct: 217 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262

Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311



 Score = 29.6 bits (65), Expect = 9.8,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 15   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 66

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 67   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 119

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRC-RIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T   +C +  P+   P  AV  N    L+++
Sbjct: 120  NLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVS 166


>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
 pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 308

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 57  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 112

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 170

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 171 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 228

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 170 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 286

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 287 ENIIASAALENDKTIKLWKSD 307



 Score = 42.0 bits (97), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 72   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 132  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 181

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 182  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 216



 Score = 38.9 bits (89), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 21   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 80   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 127

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 128  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176



 Score = 38.1 bits (87), Expect = 0.032,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 17  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 75  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 120

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 180 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 233



 Score = 31.2 bits (69), Expect = 3.4,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)

Query: 337 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 384
           ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P            
Sbjct: 96  LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154

Query: 385 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429
                          ++WD   AS      L++D    V+   + P+G  +  A   + +
Sbjct: 155 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 212

Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 477
            L+ Y+    L+ +                H N++ CI            V+  +D ++ 
Sbjct: 213 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258

Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307



 Score = 29.6 bits (65), Expect = 9.1,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 11   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 62

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 63   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 115

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRC-RIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T   +C +  P+   P  AV  N    L+++
Sbjct: 116  NLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVS 162


>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
 pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
          Length = 313

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 62  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 117

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 175

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 176 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 233

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 175 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 291

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 292 ENIIASAALENDKTIKLWKSD 312



 Score = 42.0 bits (97), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 77   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 137  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 186

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 187  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 221



 Score = 38.9 bits (89), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 26   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 85   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 132

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 133  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181



 Score = 38.1 bits (87), Expect = 0.031,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 22  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 80  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 125

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 185 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 238



 Score = 31.2 bits (69), Expect = 3.6,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)

Query: 337 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 384
           ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P            
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159

Query: 385 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429
                          ++WD   AS      L++D    V+   + P+G  +  A   + +
Sbjct: 160 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 217

Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 477
            L+ Y+    L+ +                H N++ CI            V+  +D ++ 
Sbjct: 218 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263

Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312



 Score = 29.6 bits (65), Expect = 9.8,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 16   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 67

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 68   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 120

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRC-RIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T   +C +  P+   P  AV  N    L+++
Sbjct: 121  NLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVS 167


>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
 pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
 pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
           Assembly And Regulation
          Length = 317

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 66  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 121

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 179

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 180 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 237

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 179 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 295

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 296 ENIIASAALENDKTIKLWKSD 316



 Score = 42.0 bits (97), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 81   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 141  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 190

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 191  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 225



 Score = 38.9 bits (89), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 30   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 89   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 136

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 137  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185



 Score = 38.1 bits (87), Expect = 0.031,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 26  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 84  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 129

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 189 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 242



 Score = 31.2 bits (69), Expect = 3.7,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)

Query: 337 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 384
           ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P            
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163

Query: 385 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429
                          ++WD   AS      L++D    V+   + P+G  +  A   + +
Sbjct: 164 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 221

Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 477
            L+ Y+    L+ +                H N++ CI            V+  +D ++ 
Sbjct: 222 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267

Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316



 Score = 29.6 bits (65), Expect = 9.8,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 20   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 71

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 72   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 124

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRC-RIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T   +C +  P+   P  AV  N    L+++
Sbjct: 125  NLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVS 171


>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
 pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
           Complex
 pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
           Complex
          Length = 312

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 61  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 116

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 174 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 291 ENIIASAALENDKTIKLWKSD 311



 Score = 42.0 bits (97), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 136  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 185

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 186  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 220



 Score = 38.9 bits (89), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 25   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 84   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 132  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180



 Score = 38.1 bits (87), Expect = 0.031,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 21  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 79  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 124

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 184 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237



 Score = 31.2 bits (69), Expect = 3.7,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)

Query: 337 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 384
           ++TL   SN V   +F+PQ   +++ G+    + +W+V + + L   P            
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158

Query: 385 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 429
                          ++WD   AS      L++D    V+   + P+G  +  A   + +
Sbjct: 159 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216

Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 477
            L+ Y+    L+ +                H N++ CI            V+  +D ++ 
Sbjct: 217 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262

Query: 478 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           +W++         +GH   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311



 Score = 29.6 bits (65), Expect = 9.8,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 913  VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 972
            +K  L GH   ++ + FSP    L SS AD  + +W          +F +  +G +   +
Sbjct: 15   LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----AYDGKFEKTISGHK---L 66

Query: 973  GETKVQFHNDQTHLLVVHESQ-ISVYD-SKLECSRSWSPKDALPAPISSAIYSCD----G 1026
            G + V + +D   L+   + + + ++D S  +C ++           S+ ++ C+     
Sbjct: 67   GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------SNYVFCCNFNPQS 119

Query: 1027 LLVYAGFCDGAIGVFDAETLRFRC-RIGPSAYIPTYAVSSNTAHPLVIA 1074
             L+ +G  D ++ ++D +T   +C +  P+   P  AV  N    L+++
Sbjct: 120  NLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVS 166


>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
           Histone Mark That Supports Euchromatin Maintenance
          Length = 318

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 67  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283



 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317



 Score = 41.6 bits (96), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 142  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 192  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226



 Score = 38.9 bits (89), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 31   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 90   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 138  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186



 Score = 37.7 bits (86), Expect = 0.036,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 27  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 85  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243



 Score = 30.8 bits (68), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 32/156 (20%)

Query: 385 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 444
           ++WD   AS      L++D    V+   + P+G  +  A   + + L+ Y+    L+ + 
Sbjct: 180 RIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237

Query: 445 EIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIKVWDVVAGRKQYTFEG 492
                          H N++ CI            V+  +D ++ +W++         +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283

Query: 493 HEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           H   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317


>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
          Length = 318

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           I  H  G++D+A++  +  L  V+  DDK +K+WDV +G+   T +GH    Y  C +  
Sbjct: 67  ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 565
                I S + D  ++ W            A  +  + + ++ DG+ + S  +S +G   
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180

Query: 566 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
           +  W+ + G   +T        +  V+F       LAA  +  +K WD      L T   
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238

Query: 626 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 670
                      F+  G    V+ S++ +  + N     +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283



 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 874
           ++W   SG  +   I++  P     + +  S N  Y+++A+    + L++    K +  +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236

Query: 875 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
                     F  F       I  G ED+ V I+N++  E+  KL+GH + +   A  PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296

Query: 933 LNALVSSGA--DAQLCMWSID 951
            N + S+    D  + +W  D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317



 Score = 41.6 bits (96), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N++    +D +++I++V   +    LKGH N +    F+P  N +VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1005
            +   + LK+     PA    P+   + V F+ D +  L+V  S      ++D+   +C +
Sbjct: 142  VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1042
            +    D    P+S   +S +G  + A   D  + ++D
Sbjct: 192  TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226



 Score = 38.9 bits (89), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 880  AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 939
            A + + F P +   +A    D  ++I+     + +  + GH+  I+ +A+S   N LVS+
Sbjct: 31   AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89

Query: 940  GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 994
              D  L +W +   + LK+            L G +   F    N Q++L+V    +  +
Sbjct: 90   SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137

Query: 995  SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
             ++D K  +C ++      LPA   P+S+  ++ DG L+ +   DG   ++D  +
Sbjct: 138  RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186



 Score = 37.7 bits (86), Expect = 0.036,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 507
            H   V+ + F+ PN +  + +   DK+IK+W    G+ + T  GH+  +  V      +
Sbjct: 27  GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84

Query: 508 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 559
           +  + S + D  +K W           D     C +         +F C          S
Sbjct: 85  L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130

Query: 560 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 619
              +  +  W+   G   +T        +  V F+   +  +++  +   + WD  +   
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189

Query: 620 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 675
           L T+  D   P S  ++F+  G  +   T DN +K+   S G + L+   G   +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243



 Score = 30.8 bits (68), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 32/156 (20%)

Query: 385 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 444
           ++WD   AS      L++D    V+   + P+G  +  A   + + L+ Y+    L+ + 
Sbjct: 180 RIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237

Query: 445 EIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIKVWDVVAGRKQYTFEG 492
                          H N++ CI            V+  +D ++ +W++         +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283

Query: 493 HEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 526
           H   V S   H  E+I  I S A+  D  IK W  D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 832 ESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 890
           E K  E+   C A S +D ++ + S   KV ++N MT +++  +           F    
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717

Query: 891 NNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
           ++++ A G  D  ++++++   E +  + GH N +    FSP    L S  AD  L +W
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776



 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 830 INESKPTEES---AACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFMSPPPAATFLA 885
           +N   P E+      C + S + + +M A+  K+ LF++ T  ++  +         +  
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCD 853

Query: 886 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 945
           F PQ N++  + +    V+++N          +GH + + G+ FSP  ++ ++S  D  +
Sbjct: 854 FSPQ-NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTI 912

Query: 946 CMWSIDK 952
            +W   K
Sbjct: 913 RLWETKK 919



 Score = 39.7 bits (91), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 437 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 496
           TGE  + LEI AH   V   AF+  ++   I TC  DK +K+W+ + G   +T++ H   
Sbjct: 652 TGE--KLLEIKAHEDEVLCCAFSTDDR--FIATCSVDKKVKIWNSMTGELVHTYDEHSEQ 707

Query: 497 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 555
           V + C     S   + +T + D  +K W  +    R       N      +S D   L S
Sbjct: 708 V-NCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLAS 766

Query: 556 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 593
           C  S +G   L  W+ +        S   ++S+ V QF
Sbjct: 767 C--SADGTLKL--WDAT--------SANERKSINVKQF 792



 Score = 38.5 bits (88), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 473  DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 532
            D  +KVW+++ G K+  F  H+  V S C    ++ +F  ST+ D   K W +D L    
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127

Query: 533  DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 576
            +           A+S D T L + G    GE  +  WN S G +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST-LLATG-DDNGEIRI--WNVSNGEL 1167



 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
           L +  H   V    F+   ++  I +CG DK ++V+    G K    + HE  V  +C  
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670

Query: 504 HKESIQFIFSTAIDGKIKAW 523
                +FI + ++D K+K W
Sbjct: 671 FSTDDRFIATCSVDKKVKIW 690



 Score = 33.9 bits (76), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/77 (20%), Positives = 35/77 (45%)

Query: 873 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 932
           + + P   A + A   +D   IA    D ++Q++     E   ++K H++ +   AFS  
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674

Query: 933 LNALVSSGADAQLCMWS 949
              + +   D ++ +W+
Sbjct: 675 DRFIATCSVDKKVKIWN 691



 Score = 32.0 bits (71), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 19/133 (14%)

Query: 380 AHKPFKVWDISAA----SMPLQNALLN------DAAISVNRCVWGPDGLMLGVAFSKHIV 429
           A    K+WD ++A    S+ ++   LN      D  + V  C W  DG  + VA +K+ +
Sbjct: 769 ADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA-AKNKI 827

Query: 430 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQ 487
            L+  + +G L +      H G  + I +    P   L +V       +++W+  +  K 
Sbjct: 828 FLFDIHTSGLLGE-----IHTGHHSTIQYCDFSPQNHLAVVALS-QYCVELWNTDSRSKV 881

Query: 488 YTFEGHEAPVYSV 500
               GH + V+ V
Sbjct: 882 ADCRGHLSWVHGV 894


>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
            Trypanosoma Brucei Ribosome
          Length = 318

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 23/210 (10%)

Query: 843  IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAAT----FLAFHPQ-DNNIIAIG 897
            +A S ++  ++S  GG+ +   +   K   M      A T     + F P  D  +I  G
Sbjct: 115  VAFSPDNRQIVS--GGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172

Query: 898  MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957
              D+ V+++++    + T LKGH N +T +  SP  +   SS  D    +W + K E L 
Sbjct: 173  GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232

Query: 958  SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-----LECS-RSWSPKD 1011
                 AP           ++ F  ++  +    E  I ++D +     +E +      K 
Sbjct: 233  EMAAGAPI---------NQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKK 283

Query: 1012 ALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041
             +P  +S A +S DG  +Y+G+ D  I V+
Sbjct: 284  IVPECVSIA-WSADGSTLYSGYTDNVIRVW 312



 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 419 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 469
           +L VAFS   + IV       L  +N  GE    L   AH   V+ + F+       IV+
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171

Query: 470 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500
            G D ++KVWD+  GR     +GH   V SV
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202



 Score = 37.4 bits (85), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 900 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
           D S++++N++  + + K  GH   +  +AFSP    +VS G D  L +W++
Sbjct: 88  DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138



 Score = 37.0 bits (84), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 61/266 (22%)

Query: 445 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV---- 500
            ++ H   V+D+A +  N     V+   D  +++W++  G+ QY F GH   V SV    
Sbjct: 62  RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119

Query: 501 ----------------------CPH------HKESIQFI-FSTAIDGKI---KAW----- 523
                                 C H      H + +  + FS ++D  +     W     
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179

Query: 524 LYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 580
           ++D    R+  D  G  N+ T +  S DG+   S  + K+G + L  W+ ++G A+    
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS--SDKDGVARL--WDLTKGEALSEMA 235

Query: 581 SGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV--DADGG---LPASPR 634
           +G       + Q   + NR+ + A  E  I+ +D++N +++  +  +  G    +P    
Sbjct: 236 AGAP-----INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVS 290

Query: 635 LRFNKEGSLLAVTTSDNGIKILANSD 660
           + ++ +GS L    +DN I++   S+
Sbjct: 291 IAWSADGSTLYSGYTDNVIRVWGVSE 316


>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
          Length = 402

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 819 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM-----TFKVMTM 873
           QP        D+  S+ T +S  C    K  + +  ASGG   L   +       K + +
Sbjct: 17  QPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL 76

Query: 874 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTKLKGHQNRITG 926
                     +A+ P ++N+IA G ED +V ++ +        + E    L+GH  R+  
Sbjct: 77  VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136

Query: 927 LAFSPTL-NALVSSGADAQLCMWSI 950
           +A+ PT  N L+S+G D  + +W +
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDV 161



 Score = 32.0 bits (71), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 500
           + ++ H   V  +A+ HP  Q  +++ G D +I VWDV  G    T   + H   +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182



 Score = 30.8 bits (68), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 37/83 (44%)

Query: 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638
           T  G  KR   V    T +N  L+AG +  I  WD+     + T+  D        + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185

Query: 639 KEGSLLAVTTSDNGIKILANSDG 661
           ++G+L+  +  D  ++++    G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208


>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
           Copii Vesicular Coat
          Length = 416

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 97/240 (40%), Gaps = 25/240 (10%)

Query: 330 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 389
           ++   ++ R  N  S+V ++ F+ +Q  +L  G N G+I +W++    +    P     +
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN---KCTESPSNYTPL 156

Query: 390 S-AASMPLQNALLNDAAISVNRCVWGPDG-----LMLGVAFSKHIVHLYTYNPTGELRQH 443
           +   SM   + +++ A       V+   G      +  +   K ++HL   +P   ++Q 
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTC---GDDKMIKVWDVVAGRK--QYTFEGHEAPVY 498
           L           +   HP     + T     +D  I +WD+       Q   +GH+  + 
Sbjct: 217 LS----------VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266

Query: 499 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 558
           S+   H++    + S+  D  +  W  +       + A GNWC    ++ +   LF+C +
Sbjct: 267 SLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325


>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
          Length = 402

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 819 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM-----TFKVMTM 873
           QP        D+  S+ T +S  C    K  + +  ASGG   L   +       K + +
Sbjct: 17  QPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPL 76

Query: 874 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTKLKGHQNRITG 926
                     +A+ P ++N+IA G ED +V ++ +        + E    L+GH  R+  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136

Query: 927 LAFSPTL-NALVSSGADAQLCMWSI 950
           +A+ PT  N L+S+G D  + +W +
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDV 161



 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 500
           + ++ H   V  +A+ HP  Q  +++ G D +I VWDV  G    T   + H   +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182



 Score = 30.8 bits (68), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 37/83 (44%)

Query: 579 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 638
           T  G  KR   V    T +N  L+AG +  I  WD+     + T+  D        + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185

Query: 639 KEGSLLAVTTSDNGIKILANSDG 661
           ++G+L+  +  D  ++++    G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208


>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
           Eed-Ezh2 Polycomb Complex
 pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
 pdb|3JZH|A Chain A, Eed-H3k79me3
          Length = 402

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 853 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912
           ++ S G + + N +T + +  ++    A   L FHP+D N++    +D +++++N++ D 
Sbjct: 126 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 185

Query: 913 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 966
           +      ++GH++ +    +      ++S G D  L +W I+       +K  +   P  
Sbjct: 186 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 245

Query: 967 RQSPLVGETKVQF 979
              P + + K+ F
Sbjct: 246 TNRPFISQ-KIHF 257


>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H1k26 Peptide
 pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H3k9 Peptide
 pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H4k20 Peptide
 pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
          Length = 365

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 853 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912
           ++ S G + + N +T + +  ++    A   L FHP+D N++    +D +++++N++ D 
Sbjct: 89  VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148

Query: 913 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 966
           +      ++GH++ +    +      ++S G D  L +W I+       +K  +   P  
Sbjct: 149 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208

Query: 967 RQSPLVGETKVQF 979
              P + + K+ F
Sbjct: 209 TNRPFISQ-KIHF 220


>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H3k27 Peptide
          Length = 365

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 853 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912
           ++ S G + + N +T + +  ++    A   L FHP+D N++    +D +++++N++ D 
Sbjct: 89  VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148

Query: 913 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 966
           +      ++GH++ +    +      ++S G D  L +W I+       +K  +   P  
Sbjct: 149 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208

Query: 967 RQSPLVGETKVQF 979
              P + + K+ F
Sbjct: 209 TNRPFISQ-KIHF 220


>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
 pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
 pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
          Length = 366

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 853 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912
           ++ S G + + N +T + +  ++    A   L FHP+D N++    +D +++++N++ D 
Sbjct: 90  VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149

Query: 913 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 966
           +      ++GH++ +    +      ++S G D  L +W I+       +K  +   P  
Sbjct: 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209

Query: 967 RQSPLVGETKVQF 979
              P + + K+ F
Sbjct: 210 TNRPFISQ-KIHF 221


>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
          Length = 361

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 853 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 912
           ++ S G + + N +T + +  ++    A   L FHP+D N++    +D +++++N++ D 
Sbjct: 85  VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 144

Query: 913 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 966
           +      ++GH++ +    +      ++S G D  L +W I+       +K  +   P  
Sbjct: 145 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 204

Query: 967 RQSPLVGETKVQF 979
              P + + K+ F
Sbjct: 205 TNRPFISQ-KIHF 216


>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 1
 pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 2
          Length = 343

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 45/262 (17%)

Query: 443 HLEIDAHVGGVNDIAFAHPNKQLCI-VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
           H  +  H   V+D+A +  N   C  ++   DK +++WD+  G     F GH++ VYSV 
Sbjct: 69  HKALTGHNHFVSDLALSQEN---CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125

Query: 502 --PHHKESIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAY-----SADG 550
             P +++    I S   + +IK W  + LG    S  + +   +W + + Y     SA+ 
Sbjct: 126 FSPDNRQ----ILSAGAEREIKLW--NILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179

Query: 551 TRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLA-AGDEF 607
            + F+   +  G +  L  WN +   I+ T   F+     V     + N +++A  G + 
Sbjct: 180 VQPFAPYFASVGWDGRLKVWN-TNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDK 235

Query: 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 667
           ++  WD+ N+      + D G   + ++ FN +   +AV T D G+KI            
Sbjct: 236 KLLIWDILNLTY-PQREFDAGSTIN-QIAFNPKLQWVAVGT-DQGVKIF----------- 281

Query: 668 LEGRAMDKNRCPSEPISSKPLT 689
                M +++ P   I ++P+T
Sbjct: 282 ---NLMTQSKAPVCTIEAEPIT 300



 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 36/62 (58%)

Query: 889 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
           Q+N        D +++++++R      +  GHQ+ +  +AFSP    ++S+GA+ ++ +W
Sbjct: 86  QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145

Query: 949 SI 950
           +I
Sbjct: 146 NI 147



 Score = 33.5 bits (75), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 900  DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 959
            D  ++++N    +++   K H++ +  L+ SP    + + G D +L +W I      +  
Sbjct: 193  DGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251

Query: 960  FIQAPAGRQ---SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPA 1015
            F       Q   +P +    V          ++ +S+  V   + E  +++   K   P 
Sbjct: 252  FDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311

Query: 1016 PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
              S A ++  G  ++AGF DG I  F  ET
Sbjct: 312  CTSLA-WNALGKKLFAGFTDGVIRTFSFET 340



 Score = 32.0 bits (71), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)

Query: 881  ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-------TKLKGHQNRITGLAFSPTL 933
            A F     +D+ ++  G  D +V I+ +  +E           L GH + ++ LA S   
Sbjct: 29   AGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88

Query: 934  NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HES 992
               +SS  D  L +W +      K RF+    G QS +     V F  D   +L    E 
Sbjct: 89   CFAISSSWDKTLRLWDLRTGTTYK-RFV----GHQSEVYS---VAFSPDNRQILSAGAER 140

Query: 993  QISVYDSKLECSRSWSPKDALPAPISSAIYS 1023
            +I +++   EC  S + K+     +S   YS
Sbjct: 141  EIKLWNILGECKFSSAEKENHSDWVSCVRYS 171


>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
          Length = 410

 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 106/288 (36%), Gaps = 29/288 (10%)

Query: 384 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 443
            KVWD            L     SV    +   G +L    +   + L+ +     +R  
Sbjct: 132 IKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188

Query: 444 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
              D +V  V+ +    PN    IV+   DK IK+W+V  G    TF GH   V  V P+
Sbjct: 189 HGHDHNVSSVSIM----PNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243

Query: 504 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCTMMAYS----ADGTRL 553
              ++  I S + D  ++ W+      + +     +      W    +YS    A G+  
Sbjct: 244 QDGTL--IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301

Query: 554 FSCGT------SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 607
              G       S   +  +  W+ S G    T  G      GV+ F +     L+  D+ 
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDK 360

Query: 608 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 655
            ++ WD  N   + T++A      S  L F+K    +   + D  +K+
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTS--LDFHKTAPYVVTGSVDQTVKV 406



 Score = 38.5 bits (88), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           I++C DDK ++VWD    R   T   HE  V S+  H  ++  ++ + ++D  +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407



 Score = 38.5 bits (88), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 940
            T + FHP   +++    ED+++++++    + +  LKGH + +  ++F  +   L S  
Sbjct: 111 VTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169

Query: 941 ADAQLCMWSIDKWEKLKS 958
           AD  + +W    +E +++
Sbjct: 170 ADMTIKLWDFQGFECIRT 187



 Score = 33.5 bits (75), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 446 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 505
           +  H   V  + F HP   + +V+  +D  IKVWD   G  + T +GH   V  +   H 
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160

Query: 506 ESIQFIFSTAIDGKIKAWLYDYLG 529
            S + + S + D  IK W  D+ G
Sbjct: 161 -SGKLLASCSADMTIKLW--DFQG 181



 Score = 30.8 bits (68), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 914 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 951
           K  L GH++ +T + F P  + +VS+  DA + +W  +
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 138


>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
          Length = 321

 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 889  QDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 946
            +++  +  G  D  V+++  R +  +++  L+GHQ  +  +  S TL    SS  DA + 
Sbjct: 46   ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105

Query: 947  MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR 1005
            +W ++  +++KS      AG   P+   T + F  D  +L    H  +++++   +E  +
Sbjct: 106  LWDLENGKQIKS----IDAG---PVDAWT-LAFSPDSQYLATGTHVGKVNIF--GVESGK 155

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
                 D     I S  YS DG  + +G  DG I +FD  T
Sbjct: 156  KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195



 Score = 39.3 bits (90), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 843 IALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 901
           IA S +  Y+ S A  G +++F++ T K++            L F P D+ ++    +D 
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 228

Query: 902 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931
            ++IY+V+   +   L GH + +  +AF P
Sbjct: 229 YIKIYDVQHANLAGTLSGHASWVLNVAFCP 258


>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
 pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
          Length = 399

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 460 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDG 518
           HPN+Q  + T G D M+ +WDV  G    +  + HEA ++ V   H  + + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303

Query: 519 KIKAW 523
            +  W
Sbjct: 304 SLWHW 308


>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
            Complex Obtained By Docking Homology Models Of The Rna
            And Proteins Into An 8.7 A Cryo-Em Map
          Length = 317

 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 33/241 (13%)

Query: 816  QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMM-TFKVMTM 873
            +LW   +GT     +  +K        +A S ++  ++S S  K + L+N +   K    
Sbjct: 88   RLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 143

Query: 874  FMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931
              S     + + F P  +N  I++ G  D  V+++N+   ++KT   GH   +  +  SP
Sbjct: 144  DESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202

Query: 932  TLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLL 987
              +   S G D Q  +W +++ + L +      I A             + F  ++  L 
Sbjct: 203  DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-------------LCFSPNRYWLC 249

Query: 988  VVHESQISVYD-------SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040
                  I ++D        +L+     +   A P   +S  +S DG  ++AG+ D  + V
Sbjct: 250  AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309

Query: 1041 F 1041
            +
Sbjct: 310  W 310



 Score = 36.6 bits (83), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 419 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 469
           +L VAFS   + IV       +  +N  G  +  ++ ++H   V+ + F+  +    IV+
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167

Query: 470 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500
           CG DK++KVW++   + +    GH   + +V
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198



 Score = 35.8 bits (81), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 529
           D  +++WD+  G     F GH   V SV        + I S + D  IK W  + LG   
Sbjct: 84  DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 139

Query: 530 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 586
             V  ++   W + + +S + +   + SCG  K     LV+ WN +   +K  + G    
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 194

Query: 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
            L  V      +   + G + Q   WD++    L T+D 
Sbjct: 195 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232



 Score = 35.8 bits (81), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 19/119 (15%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--------PVYS 499
            H G +N +  + P+  LC  + G D    +WD+  G+  YT +G +           Y 
Sbjct: 190 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 247

Query: 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 555
           +C     SI+      ++GKI   + D L   V      A    CT +A+SADG  LF+
Sbjct: 248 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 300


>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
            Of 2.45 Angstrom
 pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
            Of 2.45 Angstrom
 pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
            Of 2.45 Angstrom
          Length = 340

 Score = 40.8 bits (94), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 33/241 (13%)

Query: 816  QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMM-TFKVMTM 873
            +LW   +GT     +  +K        +A S ++  ++S S  K + L+N +   K    
Sbjct: 111  RLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166

Query: 874  FMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931
              S     + + F P  +N  I++ G  D  V+++N+   ++KT   GH   +  +  SP
Sbjct: 167  DESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225

Query: 932  TLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLL 987
              +   S G D Q  +W +++ + L +      I A             + F  ++  L 
Sbjct: 226  DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-------------LCFSPNRYWLC 272

Query: 988  VVHESQISVYD-------SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1040
                  I ++D        +L+     +   A P   +S  +S DG  ++AG+ D  + V
Sbjct: 273  AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332

Query: 1041 F 1041
            +
Sbjct: 333  W 333



 Score = 36.6 bits (83), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 419 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 469
           +L VAFS   + IV       +  +N  G  +  ++ ++H   V+ + F+  +    IV+
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190

Query: 470 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500
           CG DK++KVW++   + +    GH   + +V
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221



 Score = 35.8 bits (81), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 529
           D  +++WD+  G     F GH   V SV        + I S + D  IK W  + LG   
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 162

Query: 530 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 586
             V  ++   W + + +S + +   + SCG  K     LV+ WN +   +K  + G    
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 217

Query: 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
            L  V      +   + G + Q   WD++    L T+D 
Sbjct: 218 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255



 Score = 35.8 bits (81), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 19/119 (15%)

Query: 448 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--------PVYS 499
            H G +N +  + P+  LC  + G D    +WD+  G+  YT +G +           Y 
Sbjct: 213 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270

Query: 500 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 555
           +C     SI+      ++GKI   + D L   V      A    CT +A+SADG  LF+
Sbjct: 271 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323


>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
          Length = 753

 Score = 40.8 bits (94), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 504
           +AH   ++D    +  K+L   TC  DK IK+++V     +   T  GHE PV+ V   H
Sbjct: 6   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63

Query: 505 KESIQFIFSTAIDGKIKAW 523
            +    + S + DGK+  W
Sbjct: 64  PKFGTILASCSYDGKVLIW 82


>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
          Length = 694

 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 12/152 (7%)

Query: 900  DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 959
            D +V+++N+   ++++ L GH   ++ +A SP  +   S G D  + +W + + +KL S 
Sbjct: 540  DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598

Query: 960  FIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKD-ALPAP 1016
             ++A +   +      +        H + +   ES+  V D K++        D + PA 
Sbjct: 599  -LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657

Query: 1017 ISSAIYSC-------DGLLVYAGFCDGAIGVF 1041
                +  C       DG  +++G+ DG I V+
Sbjct: 658  TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689



 Score = 40.0 bits (92), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 31/138 (22%)

Query: 439 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 498
           +LR  L    H G V+ +A + P+  LC  + G D ++ +WD+  G+K Y+ E +   ++
Sbjct: 552 KLRSTLA--GHTGYVSTVAVS-PDGSLC-ASGGKDGVVLLWDLAEGKKLYSLEANSV-IH 606

Query: 499 SVC--PHHKESIQFIFSTAIDGKIKAW------LYDYL-------GSRVDYDAPGN---- 539
           ++C  P+     ++    A +  IK W      + + L         + D   P      
Sbjct: 607 ALCFSPN-----RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661

Query: 540 --WCTMMAYSADGTRLFS 555
             +CT + +SADG+ LFS
Sbjct: 662 VIYCTSLNWSADGSTLFS 679



 Score = 33.1 bits (74), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 89/234 (38%), Gaps = 63/234 (26%)

Query: 404 AAISVNRCVWGPDGLMLGVAFS---KHIVH------LYTYNPTGELRQHLEI--DAHVGG 452
           A +S  R V G    +L VAFS   + IV       +  +N  GE +  +    + H   
Sbjct: 461 AGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519

Query: 453 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 512
           V+ + F+    Q  IV+   DK +KVW++   + + T  GH   V +V            
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV------------ 567

Query: 513 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 572
                                           A S DG+   S G  K+G   L  W+ +
Sbjct: 568 --------------------------------AVSPDGSLCASGG--KDGVVLL--WDLA 591

Query: 573 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 626
           EG  K+ YS      +  + F   R  +L A  E  IK WD+++ +++  +  D
Sbjct: 592 EG--KKLYSLEANSVIHALCFSPNR-YWLCAATEHGIKIWDLESKSIVEDLKVD 642


>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
 pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
          Length = 310

 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)

Query: 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400
           N+   V  +DFHP +  +L    + G + LW   ++        +V  I     P++   
Sbjct: 11  NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59

Query: 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460
              A   + R  W      + V      + ++ YN TGE  + ++ +AH   +  IA  H
Sbjct: 60  ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106

Query: 461 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 519
           P K   +++  DD  +K+W+       + TFEGHE  V  V  + K+   F  S  +D  
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164

Query: 520 IKAW 523
           +K W
Sbjct: 165 VKVW 168



 Score = 37.4 bits (85), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 858 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914
           G+V L+N  T    + + +  +P  A  F+A      N I +G +D  ++++N    E  
Sbjct: 35  GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90

Query: 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 954
              + H + I  +A  PT   ++S   D  + +W+   WE
Sbjct: 91  VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127



 Score = 35.4 bits (80), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 880 AATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 938
              ++ ++P  D   +    +D +++I++ +       L+GH + ++   F PTL  ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245

Query: 939 SGADAQLCMWS 949
              D  L +W+
Sbjct: 246 GSEDGTLKIWN 256



 Score = 35.0 bits (79), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511
           GVN + +     +  ++T  DD  IK+WD        T EGH + V     H   ++  I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243

Query: 512 FSTAIDGKIKAW 523
            S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255



 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488
           V L+ Y    E+R     +  V     IA     ++  I+   DD  I+V++   G K  
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91

Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 547
            FE H   + S+  H  +   ++ S + D  +K W ++        ++   ++   +A++
Sbjct: 92  DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149

Query: 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 605
                 F+ G     +  +  W+  +     T +  ++R +  V +    ++   + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206

Query: 606 EFQIKFWDMDNMNMLTTVDA 625
           +  IK WD    + + T++ 
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226


>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
          Length = 304

 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)

Query: 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400
           N+   V  +DFHP +  +L    + G + LW   ++        +V  I     P++   
Sbjct: 11  NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59

Query: 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460
              A   + R  W      + V      + ++ YN TGE  + ++ +AH   +  IA  H
Sbjct: 60  ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106

Query: 461 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 519
           P K   +++  DD  +K+W+       + TFEGHE  V  V  + K+   F  S  +D  
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164

Query: 520 IKAW 523
           +K W
Sbjct: 165 VKVW 168



 Score = 37.4 bits (85), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 858 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914
           G+V L+N  T    + + +  +P  A  F+A      N I +G +D  ++++N    E  
Sbjct: 35  GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90

Query: 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 954
              + H + I  +A  PT   ++S   D  + +W+   WE
Sbjct: 91  VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127



 Score = 35.4 bits (80), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 880 AATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 938
              ++ ++P  D   +    +D +++I++ +       L+GH + ++   F PTL  ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245

Query: 939 SGADAQLCMWS 949
              D  L +W+
Sbjct: 246 GSEDGTLKIWN 256



 Score = 35.0 bits (79), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511
           GVN + +     +  ++T  DD  IK+WD        T EGH + V     H   ++  I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243

Query: 512 FSTAIDGKIKAW 523
            S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255



 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488
           V L+ Y    E+R     +  V     IA     ++  I+   DD  I+V++   G K  
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91

Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 547
            FE H   + S+  H  +   ++ S + D  +K W ++        ++   ++   +A++
Sbjct: 92  DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149

Query: 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 605
                 F+ G     +  +  W+  +     T +  ++R +  V +    ++   + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206

Query: 606 EFQIKFWDMDNMNMLTTVDA 625
           +  IK WD    + + T++ 
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226


>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
          Length = 393

 Score = 40.0 bits (92), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 943
           + F P D   +A G ED  ++I+++   ++   L+GH+  I  L + P+ + LVS   D 
Sbjct: 129 VCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187

Query: 944 QLCMWSI 950
            + +W +
Sbjct: 188 TVRIWDL 194



 Score = 31.6 bits (70), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500
           + T  +D++I++WD+   +     +GHE  +YS+
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171


>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
          Length = 379

 Score = 39.7 bits (91), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 504
           +AH   ++D    +  K+L   TC  DK IK+++V     +   T  GHE PV+ V   H
Sbjct: 8   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65

Query: 505 KESIQFIFSTAIDGKIKAW 523
            +    + S + DGK+  W
Sbjct: 66  PKFGTILASCSYDGKVLIW 84


>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
          Length = 345

 Score = 39.7 bits (91), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 877 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTL 933
           P     FLA++P    + + G  D  ++I+    D    K    +GHQ  +  +A+SP  
Sbjct: 15  PDSRCWFLAWNPAGTLLASCGG-DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG 73

Query: 934 NALVSSGADAQLCMW 948
           N L S+  DA  C+W
Sbjct: 74  NYLASASFDATTCIW 88



 Score = 38.5 bits (88), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 892 NIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
           N +A    D++  I+    D  E  T L+GH+N +  +A++P+ N L +   D  + +W 
Sbjct: 74  NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133

Query: 950 IDK 952
           +D+
Sbjct: 134 VDE 136



 Score = 34.7 bits (78), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 868 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQNRIT 925
           ++ +++  S       + +HP    ++A    D +V++Y    D+      L+GH++ + 
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198

Query: 926 GLAFSPTLNALVSSGADAQLCMW 948
            LAF P+   L S   D  + +W
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIW 221



 Score = 32.3 bits (72), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 352 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 411
           HP  +   L     G + L   G   R+     ++W     S   ++ L      +V + 
Sbjct: 14  HPDSRCWFLAWNPAGTL-LASCGGDRRI-----RIWGTEGDSWICKSVLSEGHQRTVRKV 67

Query: 412 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 471
            W P G  L  A       ++  N   +      ++ H   V  +A+A P+  L + TC 
Sbjct: 68  AWSPCGNYLASASFDATTCIWKKN-QDDFECVTTLEGHENEVKSVAWA-PSGNL-LATCS 124

Query: 472 DDKMIKVWDV 481
            DK + VW+V
Sbjct: 125 RDKSVWVWEV 134



 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 382 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 441
           K   VW++         ++LN     V   VW P   +L  A     V LY      +  
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR-EEEDDWV 185

Query: 442 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 479
               ++ H   V  +AF    ++L   +C DD+ +++W
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRL--ASCSDDRTVRIW 221


>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
          Length = 430

 Score = 39.7 bits (91), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)

Query: 886  FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 935
            + PQ+  +IA     S V +++      K           +L+GHQ    GL+++P LN 
Sbjct: 136  YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195

Query: 936  -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 987
             L+S+  D  +C+W I+   K + R I A    ++   G T V   +   HLL       
Sbjct: 196  YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 249

Query: 988  VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1045
            V  + ++ ++D++    S+     DA  A ++   ++     + A G  D  + ++D   
Sbjct: 250  VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309

Query: 1046 LRFR 1049
            L+ +
Sbjct: 310  LKLK 313



 Score = 38.1 bits (87), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 941
           L+F+P    I+A G  D +V ++++R  ++K    + H++ I  + +SP     L SSG 
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342

Query: 942 DAQLCMWSIDK 952
           D +L +W + K
Sbjct: 343 DRRLHVWDLSK 353



 Score = 32.0 bits (71), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 488
           P+GE +  L +  H      +++ +PN    +++  DD  I +WD+ A  K++       
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225

Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
            F GH A V  V  H      F  S A D K+  W
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 259


>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
 pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
          Length = 615

 Score = 39.7 bits (91), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 13/128 (10%)

Query: 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----------FMSPPPAATF 883
           P     + I++S +++Y+ +    GK+ L+++ + +V T            +S  PA   
Sbjct: 486 PLRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942
                 + +++A G  D+++ IY+V R  ++   L  H++ +  L +  T + LVSSGAD
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE-TPSTLVSSGAD 604

Query: 943 AQLCMWSI 950
           A +  W++
Sbjct: 605 ACIKRWNV 612



 Score = 32.0 bits (71), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
           II++ + D ++  Y +  DEV   + GH   IT L    T+N L+S   D ++  W
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362



 Score = 30.0 bits (66), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 826 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAA-TFL 884
            T DI +S       + ++LS+N   V    G  + +F +   +V     +P  A  +++
Sbjct: 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494

Query: 885 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNA-------- 935
           +  P +   IA G     + +Y+++  EVKT +     ++I  +++ P            
Sbjct: 495 SISPSET-YIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553

Query: 936 -LVSSGA-DAQLCMWSIDKWEKL 956
            LV++G+ D  + ++S+ +  K+
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKI 576


>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
 pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
          Length = 432

 Score = 39.7 bits (91), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)

Query: 886  FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 935
            + PQ+  +IA     S V +++      K           +L+GHQ    GL+++P LN 
Sbjct: 138  YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 197

Query: 936  -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 987
             L+S+  D  +C+W I+   K + R I A    ++   G T V   +   HLL       
Sbjct: 198  YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 251

Query: 988  VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1045
            V  + ++ ++D++    S+     DA  A ++   ++     + A G  D  + ++D   
Sbjct: 252  VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311

Query: 1046 LRFR 1049
            L+ +
Sbjct: 312  LKLK 315



 Score = 37.7 bits (86), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 941
           L+F+P    I+A G  D +V ++++R  ++K    + H++ I  + +SP     L SSG 
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344

Query: 942 DAQLCMWSIDK 952
           D +L +W + K
Sbjct: 345 DRRLHVWDLSK 355



 Score = 32.0 bits (71), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 488
           P+GE +  L +  H      +++ +PN    +++  DD  I +WD+ A  K++       
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227

Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
            F GH A V  V  H      F  S A D K+  W
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 261


>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
 pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
 pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
          Length = 422

 Score = 39.3 bits (90), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)

Query: 886  FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 935
            + PQ+  +IA     S V +++      K           +L+GHQ    GL+++P LN 
Sbjct: 140  YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 199

Query: 936  -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 987
             L+S+  D  +C+W I+   K + R I A    ++   G T V   +   HLL       
Sbjct: 200  YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 253

Query: 988  VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1045
            V  + ++ ++D++    S+     DA  A ++   ++     + A G  D  + ++D   
Sbjct: 254  VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313

Query: 1046 LRFR 1049
            L+ +
Sbjct: 314  LKLK 317



 Score = 37.7 bits (86), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 941
           L+F+P    I+A G  D +V ++++R  ++K    + H++ I  + +SP     L SSG 
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346

Query: 942 DAQLCMWSIDK 952
           D +L +W + K
Sbjct: 347 DRRLHVWDLSK 357



 Score = 32.0 bits (71), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 436 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 488
           P+GE +  L +  H      +++ +PN    +++  DD  I +WD+ A  K++       
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229

Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
            F GH A V  V  H      F  S A D K+  W
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 263


>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
 pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
 pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
          Length = 445

 Score = 39.3 bits (90), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 38/201 (18%)

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF----IFSTAIDGKIKA 522
           +V+   D M+KVWD       +T +GH   VY        S+QF    + S ++D  I+ 
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--------SLQFDGIHVVSGSLDTSIRV 303

Query: 523 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TSKEGESHLVEWNESEG 574
           W  +           GN      ++  G +  + G         S   +S +  W+   G
Sbjct: 304 WDVE----------TGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349

Query: 575 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---MNMLTTVDADGGLPA 631
              +T  G  K    V      +N  + + D+  +K WD+     +  L T+++ G    
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409

Query: 632 SPRLRFNKEGSLLAVTTSDNG 652
             R+R +    L+    S NG
Sbjct: 410 VWRIRASNT-KLVCAVGSRNG 429



 Score = 38.5 bits (88), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 894 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 953
           +  G  D+S+++++V        L GHQ+  +G+      N LVS  AD+ + +W I   
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTG 349

Query: 954 EKLKSRFIQAPAGRQSPLVGETKVQFHND 982
           + L++  +Q P   QS +   T +QF+ +
Sbjct: 350 QCLQT--LQGPNKHQSAV---TCLQFNKN 373



 Score = 36.6 bits (83), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 16/165 (9%)

Query: 464 QLC---IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 520
           Q C   IV+  DD  +KVW  V G+   T  GH   V+S     +++I  I S + D  +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181

Query: 521 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 580
           K W  +       +   G+  T+        R+     S   ++ L  W+   G      
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVV----SGSRDATLRVWDIETGQCLHVL 235

Query: 581 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 625
            G    ++  VQ+D    R ++   +F +K WD +    L T+  
Sbjct: 236 MGHVA-AVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQG 277



 Score = 35.8 bits (81), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 891 NNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCM 947
           +NI+  G  DS+V+I++++  +    L+G   HQ+ +T L F+   N +++S  D  + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386

Query: 948 WSIDKWEKLKSRFIQAPAG 966
           W +   E +++       G
Sbjct: 387 WDLKTGEFIRNLVTLESGG 405



 Score = 34.7 bits (78), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 891  NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
            +NII  G  D +++++N    E    L GH + +  +        +VS   DA L +W I
Sbjct: 169  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 226

Query: 951  DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE-CSRSWSP 1009
            +  + L        A R     G   V            ++  + V+D + E C  +   
Sbjct: 227  ETGQCLHVLMGHVAAVRCVQYDGRRVVSG---------AYDFMVKVWDPETETCLHTLQG 277

Query: 1010 KDALPAPISSAIYSC--DGLLVYAGFCDGAIGVFDAET 1045
                    ++ +YS   DG+ V +G  D +I V+D ET
Sbjct: 278  H-------TNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308



 Score = 30.4 bits (67), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 13/136 (9%)

Query: 839 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 897
           +  C+ L  ++  V+S S    + ++++ T + + + M    A   + +   D   +  G
Sbjct: 201 TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSG 255

Query: 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957
             D  V++++   +     L+GH NR+  L F      +VS   D  + +W ++      
Sbjct: 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVE-----T 308

Query: 958 SRFIQAPAGRQSPLVG 973
              I    G QS   G
Sbjct: 309 GNCIHTLTGHQSLTSG 324


>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Native Version
 pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Native Version
 pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
           Sec13-Nup145c-Nup84 Nucleoporin Complex
 pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
           Sec13-Nup145c-Nup84 Nucleoporin Complex
 pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
           Sec13-Nup145c-Nup84 Nucleoporin Complex
 pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
 pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
 pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
 pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
 pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
 pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
          Length = 297

 Score = 39.3 bits (90), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 504
           +AH   ++D    +  K+L   TC  DK IK+++V     +   T  GHE PV+ V   H
Sbjct: 6   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63

Query: 505 KESIQFIFSTAIDGKIKAW 523
            +    + S + DGK+  W
Sbjct: 64  PKFGTILASCSYDGKVLIW 82


>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
          Length = 604

 Score = 39.3 bits (90), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)

Query: 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400
           N+   V  +DFHP +  +L    + G + LW   ++        +V  I     P++   
Sbjct: 11  NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59

Query: 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460
              A   + R  W      + V      + ++ YN TGE  + ++ +AH   +  IA  H
Sbjct: 60  ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106

Query: 461 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 519
           P K   +++  DD  +K+W+       + TFEGHE  V  V  + K+   F  S  +D  
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164

Query: 520 IKAW 523
           +K W
Sbjct: 165 VKVW 168



 Score = 37.0 bits (84), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 858 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914
           G+V L+N  T    + + +  +P  A  F+A      N I +G +D  ++++N    E  
Sbjct: 35  GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90

Query: 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 954
              + H + I  +A  PT   ++S   D  + +W+   WE
Sbjct: 91  VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127



 Score = 35.0 bits (79), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 871 MTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 929
            T+         ++ ++P  D   +    +D +++I++ +       L+GH + ++   F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236

Query: 930 SPTLNALVSSGADAQLCMWS 949
            PTL  ++S   D  L +W+
Sbjct: 237 HPTLPIIISGSEDGTLKIWN 256



 Score = 34.7 bits (78), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511
           GVN + +     +  ++T  DD  IK+WD        T EGH + V     H   ++  I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243

Query: 512 FSTAIDGKIKAW 523
            S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255



 Score = 30.4 bits (67), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)

Query: 429 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 488
           V L+ Y    E+R     +  V     IA     ++  I+   DD  I+V++   G K  
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91

Query: 489 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 547
            FE H   + S+  H  +   ++ S + D  +K W ++        ++   ++   +A++
Sbjct: 92  DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149

Query: 548 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 605
                 F+ G     +  +  W+  +     T +  ++R +  V +    ++   + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206

Query: 606 EFQIKFWDMDNMNMLTTVDA 625
           +  IK WD    + + T++ 
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226


>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
          Length = 344

 Score = 39.3 bits (90), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 842 CIALS--KNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIG 897
           C+A S  K+  ++  +   ++ L++    K  +      P    T LA+HPQ + +   G
Sbjct: 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233

Query: 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931
            E+ +V + + +          H   +TGL FSP
Sbjct: 234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP 267



 Score = 31.2 bits (69), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 27/159 (16%)

Query: 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPD 416
           +LV ++ G + LWE+   E L    F  ++         + +++  ++  S  + V G  
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYE--------HDDIVSTVSVLSSGTQAVSGSK 147

Query: 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476
            + + V      V L +Y             AH   V  +A A P+K    ++C +D  I
Sbjct: 148 DICIKVWDLAQQVVLSSYR------------AHAAQVTCVA-ASPHKDSVFLSCSEDNRI 194

Query: 477 KVWDVVAGRKQYTFEGHEAPVY---SVCPHHKESIQFIF 512
            +WD    +      G  AP Y   S+  H ++S  F+F
Sbjct: 195 LLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQSEVFVF 232



 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 468 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH-HKESIQFIFSTAIDGKIKAW--L 524
           V+   D  IKVWD+       ++  H A V  V    HK+S+    S + D +I  W   
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV--FLSCSEDNRILLWDTR 200

Query: 525 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557
                S++   APG   T +A+    + +F  G
Sbjct: 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233


>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
            Ck0944636
 pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
            Ck0993548
 pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
            Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
            COMPLEX
 pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
            Inhibitor Ck-666
 pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
 pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound Inhibitor
            Ck-869 And Atp
          Length = 372

 Score = 38.9 bits (89), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 34/180 (18%)

Query: 889  QDNNIIAIGMEDSSVQIYN------VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942
            +D   IAI   +  V IY       V+V E    LK H  ++TG+ ++P  N +V+ G D
Sbjct: 18   KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73

Query: 943  AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002
                +W++ K    K   +     R +       V++  ++    V   S++ +     E
Sbjct: 74   RNAYVWTL-KGRTWKPTLVILRINRAARC-----VRWAPNEKKFAVGSGSRV-ISICYFE 126

Query: 1003 CSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058
                W     +  PI S + S D     +L+ AG CD            F+CRI  SAYI
Sbjct: 127  QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------------FKCRI-FSAYI 173



 Score = 35.4 bits (80), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472
           W  D   + +  + H VH+Y  +    ++ H E+  H G V  I +A  + +  IVTCG 
Sbjct: 16  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72

Query: 473 DKMIKVWDV 481
           D+   VW +
Sbjct: 73  DRNAYVWTL 81


>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
 pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
            Calcium
 pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
            Calcium
 pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
            With Adp And Crosslinked With Gluteraldehyde
 pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
            With Atp And Crosslinked With Glutaraldehyde
 pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
 pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
            With Adp
 pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
            With Adp
 pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
            AtpMG2+
 pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
            With Amp-Pnp And Calcium
          Length = 372

 Score = 38.9 bits (89), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 34/180 (18%)

Query: 889  QDNNIIAIGMEDSSVQIYN------VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942
            +D   IAI   +  V IY       V+V E    LK H  ++TG+ ++P  N +V+ G D
Sbjct: 18   KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73

Query: 943  AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1002
                +W++ K    K   +     R +       V++  ++    V   S++ +     E
Sbjct: 74   RNAYVWTL-KGRTWKPTLVILRINRAARC-----VRWAPNEKKFAVGSGSRV-ISICYFE 126

Query: 1003 CSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1058
                W     +  PI S + S D     +L+ AG CD            F+CRI  SAYI
Sbjct: 127  QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------------FKCRI-FSAYI 173



 Score = 35.0 bits (79), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 413 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 472
           W  D   + +  + H VH+Y  +    ++ H E+  H G V  + +A  + +  IVTCG 
Sbjct: 16  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72

Query: 473 DKMIKVWDV 481
           D+   VW +
Sbjct: 73  DRNAYVWTL 81


>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
           Copii Vesicular Coat
          Length = 297

 Score = 38.9 bits (89), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 504
           +AH   ++D    +  K++   TC  DK IK+++V     +   T  GHE PV+ V   H
Sbjct: 6   NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63

Query: 505 KESIQFIFSTAIDGKIKAW 523
            +    + S + DGK+  W
Sbjct: 64  PKFGTILASCSYDGKVMIW 82


>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
          Length = 814

 Score = 38.9 bits (89), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)

Query: 341 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 400
           N+   V  +DFHP +  +L    + G + +W   ++        +V  I     P++   
Sbjct: 11  NRSDRVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQ-------VEVRSIQVTETPVR--- 59

Query: 401 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460
              A   + R  W      + V      + ++ YN TGE  + ++ +AH   +  IA  H
Sbjct: 60  ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106

Query: 461 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 519
           P K   +++  DD  +K+W+       + TFEGHE  V  V  + K+   F  S  +D  
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164

Query: 520 IKAW 523
           +K W
Sbjct: 165 VKVW 168



 Score = 35.8 bits (81), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 858 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 914
           G+V ++N  T    + + +  +P  A  F+A      N I +G +D  ++++N    E  
Sbjct: 35  GRVEIWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90

Query: 915 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 954
              + H + I  +A  PT   ++S   D  + +W+   WE
Sbjct: 91  VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127



 Score = 35.0 bits (79), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 871 MTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 929
            T+         ++ ++P  D   +    +D +++I++ +       L+GH + ++   F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236

Query: 930 SPTLNALVSSGADAQLCMWS 949
            PTL  ++S   D  L +W+
Sbjct: 237 HPTLPIIISGSEDGTLKIWN 256



 Score = 35.0 bits (79), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 452 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 511
           GVN + +     +  ++T  DD  IK+WD        T EGH + V     H   ++  I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243

Query: 512 FSTAIDGKIKAW 523
            S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255



 Score = 30.4 bits (67), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           I+   DD  I+V++   G K   FE H   + S+  H  +   ++ S + D  +K W ++
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWE 127

Query: 527 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 585
                   ++   ++   +A++      F+ G     +  +  W+  +     T +  ++
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQE 184

Query: 586 RSLGVVQFDTTRNR--FLAAGDEFQIKFWDMDNMNMLTTVDA 625
           R +  V +    ++   + A D+  IK WD    + + T++ 
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226


>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
           Degron Recognition By ApcC.
 pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
           Degron Recognition By ApcC
          Length = 431

 Score = 38.5 bits (88), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 817 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 876
           LW   SG ++   +   +P E  ++   + + +   +  S  +V L+++   K +    S
Sbjct: 140 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 198

Query: 877 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 935
                  L++   ++ I++ G     +  ++VRV E     L GH   + GL ++P    
Sbjct: 199 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 255

Query: 936 LVSSGADAQLCMW 948
           L S G D  + +W
Sbjct: 256 LASGGNDNLVNVW 268



 Score = 32.3 bits (72), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 843 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 897
           +A     S V++  GG     + ++N+ +   ++   +     + L + P    +I+  G
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 351

Query: 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957
              + + I+         +LKGH +R+  L  SP    + S+ AD  L +W   + +  +
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411

Query: 958 SRFIQAPAGRQSPLV 972
            R  +  +  +S L+
Sbjct: 412 RREREKASAAKSSLI 426


>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
           Degron Recognition By ApcC
          Length = 420

 Score = 38.5 bits (88), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 817 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 876
           LW   SG ++   +   +P E  ++   + + +   +  S  +V L+++   K +    S
Sbjct: 129 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 187

Query: 877 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 935
                  L++   ++ I++ G     +  ++VRV E     L GH   + GL ++P    
Sbjct: 188 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 244

Query: 936 LVSSGADAQLCMW 948
           L S G D  + +W
Sbjct: 245 LASGGNDNLVNVW 257



 Score = 32.3 bits (72), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 843 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 897
           +A     S V++  GG     + ++N+ +   ++   +     + L + P    +I+  G
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 340

Query: 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 957
              + + I+         +LKGH +R+  L  SP    + S+ AD  L +W   + +  +
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400

Query: 958 SRFIQAPAGRQSPLV 972
            R  +  +  +S L+
Sbjct: 401 RREREKASAAKSSLI 415


>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
           Destruction Motif Binding And Lysine Specificity On The
           Scfbeta-Trcp1 Ubiquitin Ligase
          Length = 435

 Score = 38.1 bits (87), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           +V+   D  I++WD+  G      EGHE  V  +   +K     I S A DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW 361



 Score = 33.1 bits (74), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 27/172 (15%)

Query: 456 IAFAHPNKQLC-------IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 508
           I   H    LC       I+T   D  ++VWDV  G    T   H   V     H + + 
Sbjct: 168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLRFNN 223

Query: 509 QFIFSTAIDGKIKAWLY----DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 564
             + + + D  I  W      D    RV     G+   +     D   +     S  G+ 
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRV---LVGHRAAVNVVDFDDKYI----VSASGDR 276

Query: 565 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD 615
            +  WN S     RT +G  KR +  +Q+   R+R + +G  +  I+ WD++
Sbjct: 277 TIKVWNTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNTIRLWDIE 324



 Score = 31.6 bits (70), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 467 IVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           +VTC  D+ I VWD+ +      +    GH A V  V    K    +I S + D  IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVW 281

Query: 524 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 583
                      +        + Y     RL   G+S   ++ +  W+   GA  R   G 
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNTIRLWDIECGACLRVLEG- 334

Query: 584 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 614
            +  +  ++FD    R ++   + +IK WD+
Sbjct: 335 HEELVRCIRFDN--KRIVSGAYDGKIKVWDL 363



 Score = 31.6 bits (70), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 15/140 (10%)

Query: 816 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTM- 873
           ++W   +G ++   I+  +      A + L  N+  +++ S  + +++++M +   +T+ 
Sbjct: 196 RVWDVNTGEMLNTLIHHCE------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 249

Query: 874 --FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 931
              +    A   + F   D+  I     D +++++N    E    L GH+  I  L +  
Sbjct: 250 RVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 306

Query: 932 TLNALVSSGADAQLCMWSID 951
            L  +VS  +D  + +W I+
Sbjct: 307 RL--VVSGSSDNTIRLWDIE 324


>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
 pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
 pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
          Length = 425

 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 941
           L+F+P    I+A G  D +V ++++R  ++K    + H++ I  + +SP     L SSG 
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338

Query: 942 DAQLCMWSIDK 952
           D +L +W + K
Sbjct: 339 DRRLNVWDLSK 349



 Score = 36.2 bits (82), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 26/186 (13%)

Query: 886  FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 935
            + PQ+  IIA     S V +++      K           +L+GHQ    GL+++P L+ 
Sbjct: 132  YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191

Query: 936  -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 987
             L+S+  D  +C+W I    K + + + A    ++   G T V   +   HLL       
Sbjct: 192  HLLSASDDHTICLWDISAVPK-EGKVVDA----KTIFTGHTAV-VEDVSWHLLHESLFGS 245

Query: 988  VVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1045
            V  + ++ ++D++    S+     DA  A ++   ++     + A G  D  + ++D   
Sbjct: 246  VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305

Query: 1046 LRFRCR 1051
            L+ +  
Sbjct: 306  LKLKLH 311



 Score = 29.6 bits (65), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 435 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ------- 487
           +P+GE    L +  H      +++ +PN    +++  DD  I +WD+ A  K+       
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSW-NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAK 220

Query: 488 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
             F GH A V  V  H      F  S A D K+  W
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLF-GSVADDQKLMIW 255


>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
           Degron Recognition By ApcC
          Length = 318

 Score = 38.1 bits (87), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 817 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 876
           LW   SG ++   +   +P E  ++   + + +   +  S  +V L+++   K +    S
Sbjct: 49  LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107

Query: 877 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 935
                  L++   ++ I++ G     +  ++VRV E     L GH   + GL ++P    
Sbjct: 108 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164

Query: 936 LVSSGADAQLCMW 948
           L S G D  + +W
Sbjct: 165 LASGGNDNLVNVW 177



 Score = 31.6 bits (70), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 843 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 897
           +A     S V++  GG     + ++N+ +   ++   +     + L + P    +I+  G
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 260

Query: 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
              + + I+         +LKGH +R+  L  SP    + S+ AD  L +W
Sbjct: 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311


>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
 pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
          Length = 414

 Score = 38.1 bits (87), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 941
           L+F+P    I+A G  D +V ++++R  ++K    + H++ I  + +SP     L SSG 
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340

Query: 942 DAQLCMWSIDK 952
           D +L +W + K
Sbjct: 341 DRRLNVWDLSK 351



 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 886  FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 935
            + PQ+ +IIA     S V +++      K           +L+GHQ    GL+++  L+ 
Sbjct: 134  YXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193

Query: 936  -LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--GRQSPLVGETKVQFHNDQTHLLVVHES 992
             L+S+  D  +C+W I+   K + + + A A     S +V +      ++     V  + 
Sbjct: 194  HLLSASDDHTVCLWDINAGPK-EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252

Query: 993  QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAETLRFR 1049
            ++ ++D++    S+     DA  A ++   ++     + A G  D  + ++D   L+ +
Sbjct: 253  KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311


>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
          Length = 414

 Score = 37.7 bits (86), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 941
           L+F+P    I+A G  D +V ++++R  ++K    + H++ I  + +SP     L SSG 
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340

Query: 942 DAQLCMWSIDK 952
           D +L +W + K
Sbjct: 341 DRRLNVWDLSK 351



 Score = 35.4 bits (80), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 886  FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 935
            + PQ+ +IIA     S V +++      K           +L+GHQ    GL+++  L+ 
Sbjct: 134  YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193

Query: 936  -LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--GRQSPLVGETKVQFHNDQTHLLVVHES 992
             L+S+  D  +C+W I+   K + + + A A     S +V +      ++     V  + 
Sbjct: 194  HLLSASDDHTVCLWDINAGPK-EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252

Query: 993  QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAETLRFR 1049
            ++ ++D++    S+     DA  A ++   ++     + A G  D  + ++D   L+ +
Sbjct: 253  KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311


>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
           Crystal Form
          Length = 615

 Score = 37.7 bits (86), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 13/128 (10%)

Query: 835 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----------FMSPPPAATF 883
           P     + I++S +++Y+ +    GK+ L+++ + +V T            +S  PA   
Sbjct: 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545

Query: 884 LAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 942
                 + +++A G  D+++ IY+V R  ++   L  H++ +  L +  T + LVSSGAD
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGAD 604

Query: 943 AQLCMWSI 950
           A +  W++
Sbjct: 605 ACIKRWNV 612



 Score = 33.1 bits (74), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
           II++ + D ++  Y +  DEV   + GH   IT L    T+N L+S   D ++  WS
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWS 363


>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Selenomethionine Version
 pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Selenomethionine Version
          Length = 297

 Score = 37.4 bits (85), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 447 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 504
           +AH   ++D    +  K+    TC  DK IK+++V     +   T  GHE PV+ V   H
Sbjct: 6   NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63

Query: 505 KESIQFIFSTAIDGKIKAW 523
            +    + S + DGK+  W
Sbjct: 64  PKFGTILASCSYDGKVXIW 82


>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
           Cryo-em Map Of Yeast 80s Ribosome
          Length = 314

 Score = 36.6 bits (83), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           DK +++WDV  G     F GH++ V SV    K S+  I S + D  IK W
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134



 Score = 34.7 bits (78), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 18/156 (11%)

Query: 893  IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
            II+ G  D  V+ +N+   +++    GH + I  L  SP    + S+G D ++ +W+   
Sbjct: 169  IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224

Query: 953  WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1005
               L ++        Q  +     + F  ++  L     + I V+          L    
Sbjct: 225  ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1041
            +   K A P  +S A +S DG  ++AG+ D  I V+
Sbjct: 279  AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVW 313



 Score = 33.1 bits (74), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 521
           +  + I++ G+DKM+K W++   + +  F GH + + ++      ++  I S   DG+I 
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221

Query: 522 AW 523
            W
Sbjct: 222 LW 223


>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
           Of The First 80s In The Asymmetric Unit.
 pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
           Of The Second 80s In The Asymmetric Unit.
 pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome A
 pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome B
          Length = 319

 Score = 36.6 bits (83), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           DK +++WDV  G     F GH++ V SV    K S+  I S + D  IK W
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134



 Score = 35.4 bits (80), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 893  IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
            II+ G  D  V+ +N+   +++    GH + I  L  SP    + S+G D ++ +W+   
Sbjct: 169  IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224

Query: 953  WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1005
               L ++        Q  +     + F  ++  L     + I V+          L    
Sbjct: 225  ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
            +   K A P  +S A +S DG  ++AG+ D  I V+   T
Sbjct: 279  AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317



 Score = 33.1 bits (74), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 521
           +  + I++ G+DKM+K W++   + +  F GH + + ++      ++  I S   DG+I 
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221

Query: 522 AW 523
            W
Sbjct: 222 LW 223


>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
          Length = 319

 Score = 36.6 bits (83), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           DK +++WDV  G     F GH++ V SV    K S+  I S + D  IK W
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134



 Score = 33.9 bits (76), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 22/162 (13%)

Query: 893  IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
            II+ G  D  V+ +N+   +++    GH + I  L  SP    + S+G D ++ +W++  
Sbjct: 169  IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227

Query: 953  WEKLKSRFIQ--------APAGRQSPLVGETKVQ-FHNDQTHLLVVHESQISVYDSKLEC 1003
             + + +   Q        +P          T ++ F  D  +L+     + + Y +  E 
Sbjct: 228  KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAE- 286

Query: 1004 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
                      P  +S A +S DG  ++AG+ D  I V+   T
Sbjct: 287  ----------PHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317



 Score = 33.1 bits (74), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 521
           +  + I++ G+DKM+K W++   + +  F GH + + ++      ++  I S   DG+I 
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221

Query: 522 AW 523
            W
Sbjct: 222 LW 223


>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
           EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
           Lanuginosus Ribosome At 8.9a Resolution
          Length = 313

 Score = 36.6 bits (83), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           DK +++WDV  G     F GH++ V SV    K S+  I S + D  IK W
Sbjct: 80  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 128



 Score = 35.4 bits (80), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 893  IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
            II+ G  D  V+ +N+   +++    GH + I  L  SP    + S+G D ++ +W+   
Sbjct: 163  IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 218

Query: 953  WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1005
               L ++        Q  +     + F  ++  L     + I V+          L    
Sbjct: 219  ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
            +   K A P  +S A +S DG  ++AG+ D  I V+   T
Sbjct: 273  AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 311



 Score = 33.1 bits (74), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 521
           +  + I++ G+DKM+K W++   + +  F GH + + ++      ++  I S   DG+I 
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 215

Query: 522 AW 523
            W
Sbjct: 216 LW 217


>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P63
 pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P63
          Length = 319

 Score = 36.6 bits (83), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           DK +++WDV  G     F GH++ V SV    K S+  I S + D  IK W
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134



 Score = 35.4 bits (80), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 893  IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
            II+ G  D  V+ +N+   +++    GH + I  L  SP    + S+G D ++ +W+   
Sbjct: 169  IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224

Query: 953  WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1005
               L ++        Q  +     + F  ++  L     + I V+          L    
Sbjct: 225  ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
            +   K A P  +S A +S DG  ++AG+ D  I V+   T
Sbjct: 279  AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317



 Score = 33.1 bits (74), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 521
           +  + I++ G+DKM+K W++   + +  F GH + + ++      ++  I S   DG+I 
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221

Query: 522 AW 523
            W
Sbjct: 222 LW 223


>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
          Length = 425

 Score = 36.6 bits (83), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 44/228 (19%)

Query: 343 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 402
           G++++SMD   +  TIL           W V S   + H  F++ +   +S+  +N    
Sbjct: 161 GTHIISMDV--ENVTIL-----------WNVISGTVMQH--FELKETGGSSINAENHS-G 204

Query: 403 DAAISVNRCVWGPDGLML--GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 460
           D ++ V+   W  D   +  G   +  +  +    PTG+L        H G ++ + F  
Sbjct: 205 DGSLGVD-VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI------GHHGPISVLEFND 257

Query: 461 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 520
            NK L  ++  DD  +++W    G  Q  F GH   + S      +    + S ++DG +
Sbjct: 258 TNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK---VISCSMDGSV 312

Query: 521 KAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLV 567
           + W                  T++A S  DG  +F+   S++G+ + V
Sbjct: 313 RLWSLKQ-------------NTLLALSIVDGVPIFAGRISQDGQKYAV 347



 Score = 33.9 bits (76), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 902  SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 961
            ++ +Y +       KL GH   I+ L F+ T   L+S+  D  L +W           + 
Sbjct: 228  AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287

Query: 962  QAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAI 1021
             + +   +  VG+ KV        +    +  + ++  K     + S  D +  PI +  
Sbjct: 288  HSQSIVSASWVGDDKV--------ISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGR 337

Query: 1022 YSCDGLLVYAGFCDGAIGVFDAETLRFRCR 1051
             S DG      F DG + V+D + L  + R
Sbjct: 338  ISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367


>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
 pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
          Length = 357

 Score = 36.2 bits (82), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 842 CIAL--SKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIG 897
           C+A    K+  ++     G++ L++    K  T   F +     T + +HP+ ++  A G
Sbjct: 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245

Query: 898 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 930
            E  +V + N++  +       H   ITGLA+S
Sbjct: 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278



 Score = 33.1 bits (74), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 19/122 (15%)

Query: 359 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 418
           +LV ++ G + LWE+  +E L    F  ++       L  ++ +D          G   +
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL--SVFSD----------GTQAV 155

Query: 419 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 478
             G  FS   V ++  +    L+ +   +AH   VN +A A P K    ++CG+D  I +
Sbjct: 156 SGGKDFS---VKVWDLSQKAVLKSY---NAHSSEVNCVA-ACPGKDTIFLSCGEDGRILL 208

Query: 479 WD 480
           WD
Sbjct: 209 WD 210



 Score = 30.8 bits (68), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 468 VTCGDDKMIKVWDVV--AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW-- 523
           V+ G D  +KVWD+   A  K Y     E    + CP  K++I    S   DG+I  W  
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211

Query: 524 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 557
                 +R+D+ A     T + +  +    F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245


>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89r
 pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89r
 pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
           59 And 89: N59d And E89r
 pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
 pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
 pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
 pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
          Length = 132

 Score = 36.2 bits (82), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 650
           N+  A G  F I  WDM NM+   +L T+ ADG + A P L    R  KE  + A     
Sbjct: 47  NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106

Query: 651 NG 652
           +G
Sbjct: 107 SG 108


>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
           Protein Complex
          Length = 351

 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
           H G V  ++ A P+ +L  V+   D   K+WDV  G  + TF GHE+ + ++C
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244



 Score = 34.7 bits (78), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)

Query: 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
           V  C + P G  +      +I  +Y      G +R   E+  H G ++   F   N+   
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 167

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           IVT   D    +WD+  G++  TF GH   V S+            S A D         
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 206

Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 586
                                   TRLF  G   +  + L  W+  EG  ++T++G  + 
Sbjct: 207 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 238

Query: 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644
            +  + F    N F    D+   + +D+     L T   D  +     + F+K G LL
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296



 Score = 31.6 bits (70), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N I     D++  ++++   +  T   GH   +  L+ +P     VS   DA     S
Sbjct: 164  DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 218

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1009
               W+  +    Q   G +S +       F N         ++   ++D + +       
Sbjct: 219  AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 276

Query: 1010 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043
             D +   I+S  +S  G L+ AG+ D    V+DA
Sbjct: 277  HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310


>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
           The Gt-Beta-Gamma Subunits
 pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
 pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin
 pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin Beta-Gamma
          Length = 340

 Score = 35.8 bits (81), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
           H G V  ++ A P+ +L  V+   D   K+WDV  G  + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233



 Score = 34.7 bits (78), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)

Query: 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
           V  C + P G  +      +I  +Y      G +R   E+  H G ++   F   N+   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           IVT   D    +WD+  G++  TF GH   V S+            S A D         
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195

Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 586
                                   TRLF  G   +  + L  W+  EG  ++T++G  + 
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227

Query: 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644
            +  + F    N F    D+   + +D+     L T   D  +     + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285



 Score = 31.6 bits (70), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N I     D++  ++++   +  T   GH   +  L+ +P     VS   DA     S
Sbjct: 153  DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1009
               W+  +    Q   G +S +       F N         ++   ++D + +       
Sbjct: 208  AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 1010 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043
             D +   I+S  +S  G L+ AG+ D    V+DA
Sbjct: 266  HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299


>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
          Length = 340

 Score = 35.8 bits (81), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
           H G V  ++ A P+ +L  V+   D   K+WDV  G  + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233



 Score = 34.7 bits (78), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)

Query: 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
           V  C + P G  +      +I  +Y      G +R   E+  H G ++   F   N+   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           IVT   D    +WD+  G++  TF GH   V S+            S A D         
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195

Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 586
                                   TRLF  G   +  + L  W+  EG  ++T++G  + 
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227

Query: 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644
            +  + F    N F    D+   + +D+     L T   D  +     + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285



 Score = 31.6 bits (70), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N I     D++  ++++   +  T   GH   +  L+ +P     VS   DA     S
Sbjct: 153  DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1009
               W+  +    Q   G +S +       F N         ++   ++D + +       
Sbjct: 208  AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 1010 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043
             D +   I+S  +S  G L+ AG+ D    V+DA
Sbjct: 266  HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299


>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
           Gamma_2 With Gdp Bound
 pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
           Bound
 pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
           Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
           And Gamma 2 Subunits
 pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
           (Sigk) Bound To A G Protein Beta:gamma Heterodimer
 pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
 pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Soak)
 pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Co-Crystal)
 pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
           In Complex With An Inhibitor Ym-254890
 pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
 pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd101)
 pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd103a)
 pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
           Protein-Coupled Receptor Kinase 2-Heterotrimeric G
           Protein Beta 1 And Gamma 2 Subunit Complex
 pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
           Soluble Gbetagamma Subunits And Paroxetine
          Length = 340

 Score = 35.8 bits (81), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
           H G V  ++ A P+ +L  V+   D   K+WDV  G  + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233



 Score = 34.7 bits (78), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)

Query: 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
           V  C + P G  +      +I  +Y      G +R   E+  H G ++   F   N+   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           IVT   D    +WD+  G++  TF GH   V S+            S A D         
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195

Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 586
                                   TRLF  G   +  + L  W+  EG  ++T++G  + 
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227

Query: 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644
            +  + F    N F    D+   + +D+     L T   D  +     + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285



 Score = 31.6 bits (70), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N I     D++  ++++   +  T   GH   +  L+ +P     VS   DA     S
Sbjct: 153  DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1009
               W+  +    Q   G +S +       F N         ++   ++D + +       
Sbjct: 208  AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 1010 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043
             D +   I+S  +S  G L+ AG+ D    V+DA
Sbjct: 266  HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299


>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
           In Complex With Galpha-q And Gbetagamma Subunits
          Length = 340

 Score = 35.8 bits (81), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 449 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 501
           H G V  ++ A P+ +L  V+   D   K+WDV  G  + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233



 Score = 34.7 bits (78), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)

Query: 408 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 466
           V  C + P G  +      +I  +Y      G +R   E+  H G ++   F   N+   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 526
           IVT   D    +WD+  G++  TF GH   V S+            S A D         
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195

Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 586
                                   TRLF  G   +  + L  W+  EG  ++T++G  + 
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227

Query: 587 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 644
            +  + F    N F    D+   + +D+     L T   D  +     + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285



 Score = 31.6 bits (70), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 890  DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
            D+N I     D++  ++++   +  T   GH   +  L+ +P     VS   DA     S
Sbjct: 153  DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207

Query: 950  IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1009
               W+  +    Q   G +S +       F N         ++   ++D + +       
Sbjct: 208  AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 1010 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1043
             D +   I+S  +S  G L+ AG+ D    V+DA
Sbjct: 266  HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299


>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
          Length = 319

 Score = 35.8 bits (81), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 893  IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 952
            II+ G  D  V+ +N+   +++    GH + I  L  SP    + S+G D ++ +W+   
Sbjct: 169  IISAG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN--- 224

Query: 953  WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1005
               L ++        Q  +     + F  ++  L     + I V+          L    
Sbjct: 225  ---LAAKKAXYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278

Query: 1006 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1045
            +   K A P  +S A +S DG  ++AG+ D  I V+   T
Sbjct: 279  AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVXT 317



 Score = 35.4 bits (80), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 473 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           DK +++WDV  G     F GH++ V SV    K S   I S + D  IK W
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW 134



 Score = 30.8 bits (68), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 462 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 521
           +  + I++ G+DK +K W++   + +  F GH + + ++      ++  I S   DG+I 
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIX 221

Query: 522 AW 523
            W
Sbjct: 222 LW 223


>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
 pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
 pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
          Length = 436

 Score = 35.8 bits (81), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 931
           AT LA+HP   + +A+G +   + ++N  + +  T +K  G    ITGL F+P
Sbjct: 123 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 175



 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)

Query: 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 392
           S+ +HP   + + VG+  GDI LW  G +++               L   P       A+
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 184

Query: 393 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 440
           SM      L D   ++ R     D +      L V+ S  +V       ++   N  G+ 
Sbjct: 185 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 243

Query: 441 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 497
             +L +  H   V  +A  +P     + T   D+ +K+WD+  V G+  + +   H  PV
Sbjct: 244 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300

Query: 498 YSVC 501
            + C
Sbjct: 301 NAAC 304


>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
 pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
          Length = 316

 Score = 35.4 bits (80), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 417 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 476
           G  L    S   V ++     G++    ++  H G V  +A+AHP     + +C  D+ +
Sbjct: 25  GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83

Query: 477 KVWDVVAG--RKQYTFEGHEAPVYSVC--PH 503
            +W    G   K +   GH++ V SVC  PH
Sbjct: 84  IIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114



 Score = 33.1 bits (74), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 22/142 (15%)

Query: 407 SVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA----- 459
           SVN   W P   GL+L    S   + L TY   G+       +AH  G N +++A     
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164

Query: 460 -----HPNKQ-----LCIVTCGDDKMIKVW---DVVAGRKQYTFEGHEAPVYSV--CPHH 504
                HP+ Q         + G D +IK+W   +    +++   E H   V  V   P  
Sbjct: 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224

Query: 505 KESIQFIFSTAIDGKIKAWLYD 526
                 I S + DG++  W  D
Sbjct: 225 GLPTSTIASCSQDGRVFIWTCD 246



 Score = 32.7 bits (73), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 467 IVTCGDDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 523
           + TC  D+ +K++DV  G +       GHE PV+ V   H      + S + D K+  W
Sbjct: 28  LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86


>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
           (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
           Repair
          Length = 435

 Score = 35.4 bits (80), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 931
           AT LA+HP   + +A+G +   + ++N  + +  T +K  G    ITGL F+P
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174



 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)

Query: 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 392
           S+ +HP   + + VG+  GDI LW  G +++               L   P       A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183

Query: 393 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 440
           SM      L D   ++ R     D +      L V+ S  +V       ++   N  G+ 
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242

Query: 441 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 497
             +L +  H   V  +A  +P     + T   D+ +K+WD+  V G+  + +   H  PV
Sbjct: 243 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299

Query: 498 YSVC 501
            + C
Sbjct: 300 NAAC 303


>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
           (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
           Repair
          Length = 436

 Score = 35.4 bits (80), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 931
           AT LA+HP   + +A+G +   + ++N  + +  T +K  G    ITGL F+P
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174



 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)

Query: 348 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 392
           S+ +HP   + + VG+  GDI LW  G +++               L   P       A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183

Query: 393 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 440
           SM      L D   ++ R     D +      L V+ S  +V       ++   N  G+ 
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242

Query: 441 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 497
             +L +  H   V  +A  +P     + T   D+ +K+WD+  V G+  + +   H  PV
Sbjct: 243 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299

Query: 498 YSVC 501
            + C
Sbjct: 300 NAAC 303


>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
          Length = 408

 Score = 35.0 bits (79), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 21/159 (13%)

Query: 809 ATANVAPQLW--QPPSGTLMTNDINESKPTE--ESAACIALSKNDSYVMSASGGKVSLFN 864
           A+A+   +LW  +  SG L+T D +  K ++  ESA      K +    ++ G  + L  
Sbjct: 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLT 262

Query: 865 MMTFKVMTMFMSPPPAATFLAFHPQDNN-------IIAIGMED--------SSVQIYNVR 909
           + T   M ++ S     T + +    NN        ++ G           S++ +Y V 
Sbjct: 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY 322

Query: 910 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 948
             E  T LKGH   +    F      L S   D  +  W
Sbjct: 323 SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361



 Score = 34.3 bits (77), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMW--- 948
           ++A+G     VQ+ +++       L+GH+  I  +++SP  +  L ++ AD+++ +W   
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217

Query: 949 -------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 989
                  ++D+    KS+ +++     +  V    + F +D  HLL V
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKV--NGLCFTSDGLHLLTV 263



 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 822 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG-KVSLFNMMTFKVMTMFMSPPPA 880
           + TL T D+   + T  S     +S     V   + G KV L ++ +     +       
Sbjct: 129 TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE 188

Query: 881 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR--------VDE--------VKTKLKGHQNRI 924
              +++ P+ + I+A    DS V++++VR        +D+        V++    H  ++
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248

Query: 925 TGLAFSPTLNALVSSGADAQLCMWS 949
            GL F+     L++ G D ++ +W+
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWN 273


>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89y
 pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89y
 pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
           And 89: N59d E89y
          Length = 132

 Score = 34.7 bits (78), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  WDM NM+   +L T+ ADG + A P L
Sbjct: 47  NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87


>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89k
 pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89k
 pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
           59 And 89: N59d E89k
          Length = 132

 Score = 34.7 bits (78), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  WDM NM+   +L T+ ADG + A P L
Sbjct: 47  NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87


>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89q
 pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
           59 And 89: N59d And E89q
 pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
           59 And 89: N59d E89q
          Length = 132

 Score = 34.7 bits (78), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  WDM NM+   +L T+ ADG + A P L
Sbjct: 47  NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87


>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
 pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
          Length = 129

 Score = 34.7 bits (78), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90


>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
          Length = 128

 Score = 34.7 bits (78), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
           Chey
          Length = 128

 Score = 34.3 bits (77), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
           Reg Particle Of The Proteasome
          Length = 417

 Score = 34.3 bits (77), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 896 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
           +G  +  +++ +   +  +   + H + IT L F P+  AL+SS  D QL +WS+
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165



 Score = 34.3 bits (77), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 445 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
           EID AHV  +  + F    + L  ++   D  +K+W V  G    T  GH A V  +   
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187

Query: 504 HKESIQFIFSTAIDGKIKAW 523
            +   + + S ++DG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205


>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
 pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
          Length = 420

 Score = 34.3 bits (77), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 896 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
           +G  +  +++ +   +  +   + H + IT L F P+  AL+SS  D QL +WS+
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168



 Score = 33.9 bits (76), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 445 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 503
           EID AHV  +  + F    + L  ++   D  +K+W V  G    T  GH A V  +   
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190

Query: 504 HKESIQFIFSTAIDGKIKAW 523
            +   + + S ++DG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208


>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
           Complexed With Bef3- And Mn2+
 pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
           Complexed With Bef3- And Mn2+
          Length = 128

 Score = 34.3 bits (77), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 650
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    R  KE  + A     
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102

Query: 651 NG 652
           +G
Sbjct: 103 SG 104


>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
           CRYSTAL Structure
 pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
           CRYSTAL Structure
          Length = 354

 Score = 34.3 bits (77), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 26/190 (13%)

Query: 338 RTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 396
           RTL   G+ V+ MD+   ++ I+    + G + +W+           F      A +MP 
Sbjct: 58  RTLKGHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWD----------SFTTNKEHAVTMP- 105

Query: 397 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY--TYNPTGELR-QHLEIDAHVGGV 453
                      V  C + P G  +      +   +Y  T++    +  +   +  H   +
Sbjct: 106 --------CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL 157

Query: 454 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS 513
           +  +F + + Q  I+T   D    +WDV +G+   +F GH A V  +     E+     S
Sbjct: 158 SACSFTNSDMQ--ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215

Query: 514 TAIDGKIKAW 523
              D K   W
Sbjct: 216 GGCDKKAMVW 225



 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 900  DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP--TLNALVSSGADAQLCMWSIDKWEKLK 957
            D +  +++V   ++     GH   +  L  +P  T N  VS G D +  +W +       
Sbjct: 175  DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----- 229

Query: 958  SRFIQAPAGRQSPLVGETKVQFH-NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1016
             + +QA    +S +     V+++ +         ++   +YD + +   +   K+++   
Sbjct: 230  GQCVQAFETHESDV---NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286

Query: 1017 ISSAIYSCDGLLVYAGFCDGAIGVFD 1042
             SS  +S  G L++AG+ D  I V+D
Sbjct: 287  ASSVDFSLSGRLLFAGYNDYTINVWD 312



 Score = 32.3 bits (72), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 893 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 949
           ++  G  D ++ +++V      + L GH+NR++ L  SP   A  S   D  L +W+
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354



 Score = 30.0 bits (66), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 467 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500
            V+ G DK   VWD+ +G+    FE HE+ V SV
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246


>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
 pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
          Length = 129

 Score = 33.9 bits (76), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEA 90


>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
 pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
          Length = 129

 Score = 33.9 bits (76), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEA 90


>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
           Chey
          Length = 130

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 45  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91


>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
          Length = 128

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
           Dynamics Of Chemotaxis Y Protein Using Three-And
           Four-Dimensional Heteronuclear (13c,15n) Nmr
           Spectroscopy
          Length = 128

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
           Escherichia Coli
 pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
           Escherichia Coli
 pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
 pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
 pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
 pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
 pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
 pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
           N-Terminus Of Flim
 pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
           N-Terminus Of Flim
 pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
           N-Terminus Of Flim
 pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
           Resolution
 pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
           Resolution
 pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
           Crystals Soaked In Acetyl Phosphate
 pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
           Crystals Soaked In Acetyl Phosphate
 pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
           Bound Imido Diphosphate
 pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
           Bound Imido Diphosphate
 pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
 pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
 pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
           Terminus Of Flim
 pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
           Terminus Of Flim
 pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
           Results In Large Conformational Changes Involving Its
           Functional Surface
 pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
           Angstrom Resolution
 pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
           CHEMOTAXIS
          Length = 128

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
           Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
           Replaced By Gly
          Length = 129

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90


>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
          Length = 128

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
           By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
           Leu (Stabilizing Mutations In Helix 4)
 pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
           By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
           Leu (Stabilizing Mutations In Helix 4)
 pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
           By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
           Leu (Stabilizing Mutations In Helix 4)
 pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
           By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
           Leu (Stabilizing Mutations In Helix 4)
          Length = 129

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90


>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
           Chey
          Length = 127

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 42  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 88


>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
           Coli
 pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
          Length = 129

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90


>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
 pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
          Length = 128

 Score = 33.9 bits (76), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L
Sbjct: 43  NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83


>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
          Length = 128

 Score = 33.9 bits (76), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L
Sbjct: 43  NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83


>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
           Between The Nucleoporin Nup98 And The Mrna Export Factor
           Rae1
 pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
           Between The Nucleoporin Nup98 And The Mrna Export Factor
           Rae1
 pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
           Between The Nucleoporin Nup98 And The Mrna Export Factor
           Rae1
 pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
           Between The Nucleoporin Nup98 And The Mrna Export Factor
           Rae1
          Length = 368

 Score = 33.9 bits (76), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 415 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH------------VGGVNDIAFAHPN 462
           P G  LG    +  +H    NP    + +     H            +  VN IAF HP 
Sbjct: 228 PTGFALGSIEGRVAIHYI--NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF-HPV 284

Query: 463 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 517
               + T G D     WD  A  K  T E  + P+ + C +H  +I F ++++ D
Sbjct: 285 HGT-LATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI-FAYASSYD 337


>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
           Replaced By Gly (M17g)
 pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
           Replaced By Gly (M17g)
          Length = 130

 Score = 33.9 bits (76), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 45  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91


>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
           In Aqueous Solution By Nuclear Magnetic Resonance
           Methods
          Length = 129

 Score = 33.9 bits (76), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90


>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
           Triphosphate And Mg2+ Binding Site
          Length = 128

 Score = 33.9 bits (76), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
 pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
          Length = 125

 Score = 33.9 bits (76), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 40  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 86


>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
          Length = 128

 Score = 33.5 bits (75), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
 pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
 pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
           Sulfate
 pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
           Sulfate
          Length = 129

 Score = 33.5 bits (75), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90


>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
           Fluoride
 pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
           Fluoride
          Length = 128

 Score = 33.5 bits (75), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89


>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
 pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
          Length = 129

 Score = 33.5 bits (75), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEA 90


>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
 pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
          Length = 125

 Score = 33.1 bits (74), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 40  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEA 86


>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
           Structure Of A C. Elegans Homologue Of Yeast Actin
           Interacting Protein 1 (Aip1).
 pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
           Caenorhabditis Elegans
          Length = 611

 Score = 33.1 bits (74), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 42/249 (16%)

Query: 342 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 401
           Q   + S+DF P +   ++ G++   ++++E          PFK             +  
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKF-----------KSTF 186

Query: 402 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY---NPTGELRQ-HLEIDAHVGGVNDIA 457
            +    V+   + PDG +         + LY       TG      L+  AH G V  + 
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246

Query: 458 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI----QFIFS 513
           ++    +  I +   DK IK+W+V   + + T      PV +     +  I    Q + S
Sbjct: 247 WSPDGTK--IASASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTKQALVS 299

Query: 514 TAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 571
            + +G I  ++   LGS  +V Y       T ++ SADG  LFS     + E H+  W+ 
Sbjct: 300 ISANGFIN-FVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSA----DAEGHINSWDI 353

Query: 572 SEGAIKRTY 580
           S G   R +
Sbjct: 354 STGISNRVF 362



 Score = 32.0 bits (71), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 889 QDNNIIAIGMEDSSVQIYNV---RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 945
            D   +A+G +DS V +Y +    V EVKT +  H   IT +AFS     LV++    ++
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKV 515

Query: 946 CMWSI 950
             +S+
Sbjct: 516 IPYSV 520



 Score = 31.6 bits (70), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 860 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT---- 915
           V++F    FK  + F         + ++P D ++ A    D ++ +YN  VD  KT    
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN-GVDGTKTGVFE 229

Query: 916 ----KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 950
               K   H   + GL +SP    + S+ AD  + +W++
Sbjct: 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268


>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
 pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
           Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
          Length = 129

 Score = 33.1 bits (74), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEA 90


>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
           Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
           Isoleucine Mutant At Position 87 Of Chey
 pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
           Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
           Isoleucine Mutant At Position 87 Of Chey
          Length = 128

 Score = 32.7 bits (73), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83


>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
 pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
          Length = 128

 Score = 32.7 bits (73), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  W+M NM+   +L T+ ADG + A P L
Sbjct: 43  NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83


>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
 pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
          Length = 313

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 443 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 500
           H ++  H+  V+D  F         ++C +D +IK+ D   G    T+EGHE+ VY +
Sbjct: 183 HNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231


>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
           Complexed With Bef3- And Mn2+
 pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
           Complexed With Bef3- And Mn2+
          Length = 128

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 598 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 650
           N+  A G  F I  W   +MD + +L T+ ADG + A P L    R  KE  + A     
Sbjct: 43  NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102

Query: 651 NG 652
           +G
Sbjct: 103 SG 104


>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
           Of The E. Coli Chemotaxis Response Regulator Chey
 pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
           Of The E. Coli Chemotaxis Response Regulator Chey
          Length = 129

 Score = 32.7 bits (73), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 641
           N+  A G  F I  W M NM+   +L T+ ADG + A P L    E 
Sbjct: 44  NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90


>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
          Length = 401

 Score = 32.3 bits (72), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 100/268 (37%), Gaps = 49/268 (18%)

Query: 386 VWDISAASMPLQNALL-NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 444
           VW+  + S+   +AL   D +  V    W  DG  L V     +V +Y      +LR   
Sbjct: 117 VWNADSGSV---SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173

Query: 445 EIDAHVGGV------------------NDIAFAHP--------NKQLC----------IV 468
              A VG +                  +D+  A+         + ++C          + 
Sbjct: 174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233

Query: 469 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV--CPHHKESIQFIFSTAIDGKIKAWLYD 526
           + G+D ++++WD  +   ++T   H A V +V  CP     +     T +D +I  W   
Sbjct: 234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT-MDKQIHFW-NA 291

Query: 527 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS--GFR 584
             G+RV+    G+  T + +S     + S  T    +++L  W+ S   + +        
Sbjct: 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMS--THGFPDNNLSIWSYSSSGLTKQVDIPAHD 349

Query: 585 KRSLGVVQFDTTRNRFLAAGDEFQIKFW 612
            R L        R    AA DE  +KFW
Sbjct: 350 TRVLYSALSPDGRILSTAASDE-NLKFW 376


>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
           Complexed With Bef3- And Mn2+
 pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
           Complexed With Bef3- And Mn2+
          Length = 128

 Score = 32.0 bits (71), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  W M NM+   +L T+ ADG + A P L
Sbjct: 43  NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVL 83


>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
           Complexed With Bef3- And Mn2+
 pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
           Complexed With Bef3- And Mn2+
          Length = 128

 Score = 31.6 bits (70), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 635
           N+  A G  F I  W M NM+   +L T+ ADG + A P L
Sbjct: 43  NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVL 83


>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
           Complexed With Bef3- And Mn2+
 pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
           Complexed With Bef3- And Mn2+
          Length = 128

 Score = 31.2 bits (69), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 598 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL 635
           N+  A G  F I  W   +MD + +L T+ ADG + A P L
Sbjct: 43  NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVL 83


>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
           Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
 pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
           (Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
 pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
 pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
 pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
 pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
          Length = 382

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWE 372
           V S+++HP   T + VG+  GDI LW+
Sbjct: 75  VTSLEWHPTHPTTVAVGSKGGDIILWD 101


>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
 pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
 pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
 pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
           Structure Of Arabidopsis Thaliana Protein Arginine
           Methyltransferase 10
          Length = 376

 Score = 30.4 bits (67), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 326 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW--EVGSRERLAHKP 383
           +Y Q D+    VR     + V     H + +T+L VGT  G +++W  + G+R+  A + 
Sbjct: 35  LYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEA 94

Query: 384 FKVWDISAASMPLQN 398
            K+ D + A +   N
Sbjct: 95  TKMADHARALVKANN 109


>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
           Photoproduct Containing Dna-Duplex
 pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
           Containing Dna-Duplex
 pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
          Length = 383

 Score = 30.0 bits (66), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 346 VMSMDFHPQQQTILLVGTNVGDISLWE 372
           V S+++HP   T + VG+  GDI LW+
Sbjct: 76  VTSLEWHPTHPTTVAVGSKGGDIILWD 102


>pdb|3GBS|A Chain A, Crystal Structure Of Aspergillus Oryzae Cutinase
          Length = 197

 Score = 30.0 bits (66), Expect = 8.7,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 528 LGSRVDYDAPGNWC---TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKR 578
           +G R   D P N     T  A  A+   LF    SK  ++ +V    S+G      AIKR
Sbjct: 63  VGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKR 122

Query: 579 TYSGFRKRSLGVVQFDTTRN 598
             +  + +  GVV F  TRN
Sbjct: 123 LSADVQDKIKGVVLFGYTRN 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,748,959
Number of Sequences: 62578
Number of extensions: 1401451
Number of successful extensions: 4372
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 3619
Number of HSP's gapped (non-prelim): 595
length of query: 1132
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1023
effective length of database: 8,152,335
effective search space: 8339838705
effective search space used: 8339838705
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)